Citrus Sinensis ID: 011781

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------
Protein Sequence
MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYLEL
Secondary Structure (PSIPRED)
ccccccccccEEEcccccccccccccccccccccccccccccccccccEEccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccEEEccccccccEEEEEcccccccccEEEEcccccEEEEEEccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccHHHHEHEHHHHHHHHEEEcccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccHHcccccccccccccHHHHHccccHHHHHEHHHcccHHHHHHHHHcHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHEEEEEEEEEHHccHHHHccccEccccccHHHHHHHHHccc
Coil and Loop (DISEMBL)
MAKLTLGAEKFFVFAhntssgrlvfakrnsskrqkfhlypsegcsrlrvscsikekenvkeetdkfdevltglrvdepgsvsgfdsesgqvrgteevgrasywppwknipqrykligTTSLAFVICNMDKVNLSVAIIpmshrfgwnssvaglvqssffwgyalsqlpggwlakifggrkvLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGigegvspsaaTDLIarsipleersRAVSFVFGGLsfgsvaglllappiienlgweSVFYIFGLLGIawfsgfkilqegetsngatlaprsnyINMKKSLSASLEEMGEslkdvpwkaIFRSKAVWAMIYAHFcgswghytclswlptyfseelslnlTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLssidlglphwEIVGILTAGLALSSFALsglycthqdispEYASILLYLEL
Flexible Loop (DISEMBL)
MAKLTLGAEKFFvfahntssgrlvfakrnsskrqkfhlypsegcsrlrvscsikekenvkeetdkfdevltglrvdepgsvsgfdsesgqvrgteevgrasywppwkniPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETsngatlaprsnYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYLEL
Low Complexity Region (SEG)
MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGIltaglalssfalsglYCTHQDISPEYASILLYLEL
Disordered region (IsUnstruct)
*****LGAEKFFVFAHNTSSGRLVFA*********FHLYP**GCSRLRVS**********************************************VGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQE********************************LKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYL**
Disordered Region (DISOPRED)
********************************************************************************************************PWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEG***********************************PWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYLEL
Disordered Region (DISEMBL)
MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYLEL
Disordered Region (DISPRO)
*AKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKE******************************************ASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSA*******SLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYLEL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYLEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	477	2.2.26 [Sep-21-2011]
Q3E9A0	517	Probable anion transporte	yes	no	0.935	0.862	0.665	1e-176
Q0IZQ3	471	Probable anion transporte	yes	no	0.616	0.624	0.713	1e-119
Q652N5	591	Probable anion transporte	yes	no	0.865	0.698	0.377	1e-78
Q9SDI4	529	Probable anion transporte	no	no	0.754	0.680	0.412	1e-77
O82390	512	Sodium-dependent phosphat	no	no	0.798	0.744	0.388	2e-76
Q8GX78	541	Probable anion transporte	no	no	0.878	0.774	0.365	2e-74
Q8W0H5	519	Probable anion transporte	no	no	0.744	0.684	0.387	5e-56
Q7XJR2	512	Probable anion transporte	no	no	0.855	0.796	0.332	2e-55
Q66GI9	533	Probable anion transporte	no	no	0.740	0.662	0.353	6e-52
Q53WP9	535	Probable anion transporte	no	no	0.742	0.661	0.346	2e-51

>sp|Q3E9A0|ANTR6_ARATH Probable anion transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ANTR6 PE=2 SV=1

 Score =  619 bits (1595), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 320/481 (66%), Positives = 363/481 (75%), Gaps = 35/481 (7%)

Query: 1   MAKLTLGAEKFFVFAHNTSSGRLVFAKRNS--SKRQKFHLYPSEGCSRLRVSCSIKEKEN 58
           MA+LTL         HN      ++A +    S    F  +      + RV CS    E 
Sbjct: 1   MARLTLRP-------HNHFFSSPIYAHKQPFLSVYTIFPHHHQNPLIKSRVKCSASGTER 53

Query: 59  VKEET-----DKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRY 113
           V+E       D  ++    L + E  S               E G    WPPWKNIPQRY
Sbjct: 54  VRESKKLPPKDPIEDPKPQLPIPEVLST--------------ETGFEQNWPPWKNIPQRY 99

Query: 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLA 173
           KLIG TSLAFVICNMDKVNLS+AIIPMSH+FGW+SSVAGLVQSSFFWGYALSQLPGGWL+
Sbjct: 100 KLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQSSFFWGYALSQLPGGWLS 159

Query: 174 KIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIP 233
           KIFGGRKVL+ GV  WS ATAL+PLLAGFMPGL+ SR+LVGIGEGVSPSAATDLIAR+IP
Sbjct: 160 KIFGGRKVLEIGVFTWSFATALVPLLAGFMPGLIFSRILVGIGEGVSPSAATDLIARTIP 219

Query: 234 LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGE 293
           ++ERSRAV FVFGGLS GSV GLLLAPPIIE   WESVFY+FGLLG+ WF GF+ L E E
Sbjct: 220 VKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLFGLLGVGWFVGFQFLNEEE 279

Query: 294 TSNGATLAPRSNYINM-KKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH 352
            S       + N I+   KS +A+ EE+G SLK++PWK+ F+S AVWAMIY HFCGSWGH
Sbjct: 280 VSY------KGNEISTSHKSENATKEELGSSLKEIPWKSFFQSPAVWAMIYTHFCGSWGH 333

Query: 353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKI 412
           YTCLSWLPTYFSE LSLNLTEAAWVSILPPLAS++VTS+A+QFAD LI  GV+TT VRKI
Sbjct: 334 YTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQFADYLITNGVDTTTVRKI 393

Query: 413 CQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASIL 472
           CQTIAF++PA+CMTLSS+D+GLP WEIVGILTAGLALSSFALSGLYCTHQDISPEYASIL
Sbjct: 394 CQTIAFVAPAICMTLSSVDIGLPPWEIVGILTAGLALSSFALSGLYCTHQDISPEYASIL 453

Query: 473 L 473
           L
Sbjct: 454 L 454

Inorganic phosphate and probable anion transporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0IZQ3|PHT45_ORYSJ Probable anion transporter 5, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;5 PE=2 SV=2

 Score =  428 bits (1101), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/307 (71%), Positives = 249/307 (81%), Gaps = 13/307 (4%)

Query: 180 KVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSR 239
           +VL+ GV+ WSLATA++P +AGFMPGLVLSR+LVGIGEGVSPSAATDLIARSIP++ERSR
Sbjct: 99  RVLEIGVVAWSLATAIIPAVAGFMPGLVLSRILVGIGEGVSPSAATDLIARSIPVQERSR 158

Query: 240 AVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGAT 299
           AV+ VFGGLSFGSV GLL APPII+NLGWESVFYIFGLLGI W  GF+ L+E +      
Sbjct: 159 AVAVVFGGLSFGSVLGLLFAPPIIQNLGWESVFYIFGLLGIIWCLGFQSLKEQQLRGNED 218

Query: 300 LAPRSNY-------------INMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF 346
           +    +                  KS  +SL E+  SLKDVPW+  F+SKAVWAMIYAHF
Sbjct: 219 IQVIQDLGQSPSGSSDLISSSVSPKSSESSLGELMNSLKDVPWREFFKSKAVWAMIYAHF 278

Query: 347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET 406
           CGSWGHYTCLSWLPT+FSEEL LNLTEAAWVS+LPPL S+++TSIAA FADNLI+ GV+T
Sbjct: 279 CGSWGHYTCLSWLPTFFSEELDLNLTEAAWVSVLPPLGSMIITSIAAPFADNLISNGVDT 338

Query: 407 TMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISP 466
           T VRKICQTIAFLSPA  M LSS+DLG+P WEIV  LT+GLALSSFALSGLYCTHQDIS 
Sbjct: 339 TKVRKICQTIAFLSPATFMMLSSVDLGVPPWEIVAFLTSGLALSSFALSGLYCTHQDISR 398

Query: 467 EYASILL 473
           EYASILL
Sbjct: 399 EYASILL 405

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q652N5|PHT44_ORYSJ Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1

 Score =  294 bits (752), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 164/435 (37%), Positives = 249/435 (57%), Gaps = 22/435 (5%)

Query: 43  GCSRLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASY 102
            C +      ++ + + K E  +    +TG     P S S   +E+  +  T E+     
Sbjct: 125 ACVQPDYKIPVRTRADCKAEQYE----ITG----SPLSPSDVPAEAVLIGDTNEIS---- 172

Query: 103 WPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGY 162
            P W+  P+R+ ++     +F++CNMD+VN+S+AI+PMS  FGW+ +  GL+QSSFFWGY
Sbjct: 173 -PWWQQFPKRWTVVLLCFFSFLLCNMDRVNMSIAILPMSSEFGWSPATVGLIQSSFFWGY 231

Query: 163 ALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLSRVLVGIGEGVSP 221
            L+Q+ GG  A  FGG+ VL  GV+ WS+AT L PL A   +P L++ R  +GIGEGV+ 
Sbjct: 232 LLTQILGGIWADRFGGKVVLGFGVVWWSIATVLTPLAAKIGLPFLLVMRAFMGIGEGVAM 291

Query: 222 SAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIA 281
            A  +++++ +P+ ERSR+++ V+ G+  GSV GL  +P +I   GW SVFY FG LG  
Sbjct: 292 PAMNNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLISRFGWPSVFYAFGSLGSV 351

Query: 282 WFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAM 341
           WF+    L + +  +  +  P  +    +  L  S   + E +  +PWK I     VWA+
Sbjct: 352 WFA----LWQRKAHSSPSEDPELSKAEKRYILGGS--TLKEPVTSIPWKLILSKPPVWAL 405

Query: 342 IYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIA 401
           I +HFC +WG +  L+W+PTY+++ L  NLTE+  + +LP L   +  +I    AD L+ 
Sbjct: 406 IVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAIFANIGGWIADTLVG 465

Query: 402 TGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTH 461
            GV  T VRKI Q+I FL PA+ +TL S  +  P   ++  +       +F+ SGLY  H
Sbjct: 466 RGVSITNVRKIMQSIGFLGPALFLTLLS-KVRTPAMAVL-CMACSQGSDAFSQSGLYSNH 523

Query: 462 QDISPEYASILLYLE 476
           QDI P YA +LL L 
Sbjct: 524 QDIGPRYAGVLLGLS 538

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SDI4|PHT41_ORYSJ Probable anion transporter 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;1 PE=2 SV=1

 Score =  291 bits (744), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 153/371 (41%), Positives = 222/371 (59%), Gaps = 11/371 (2%)

Query: 108 NIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQL 167
             P+R+ ++     AF++CNMD+VN+S+AI+PMS  FGWN    GL+QSSFFWGY L+Q+
Sbjct: 115 QFPKRWAIVFLCFSAFLLCNMDRVNMSIAILPMSAEFGWNPQTVGLIQSSFFWGYLLTQI 174

Query: 168 PGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLSRVLVGIGEGVSPSAATD 226
            GG  A   GG+ VL  GV+ WS+ATAL P  A   +P L+++R  +G+GEGV+  A  +
Sbjct: 175 AGGIWADTVGGKTVLGFGVIWWSIATALTPFAAKLGLPFLLVTRAFMGVGEGVAMPAMNN 234

Query: 227 LIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGF 286
           ++++ +P+ ERSR+++ V+ G+  GSV GL  +P +I N GW SVFY FG LG+ WFS +
Sbjct: 235 ILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLIHNFGWPSVFYSFGSLGVFWFSTW 294

Query: 287 KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF 346
                        ++        +K L  S    GE +K++PW  I     VWA+I +HF
Sbjct: 295 ASKAYSSPLEDPGISAE------EKKLITSQTTGGEPVKEIPWGLILSKPPVWALIVSHF 348

Query: 347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET 406
           C +WG +  L+W+PTY+++ L  NLTE+    +LP L   +  +     AD L++ G+  
Sbjct: 349 CHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVSANFGGWIADTLVSRGLSV 408

Query: 407 TMVRKICQTIAFLSPAVCMT-LSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDIS 465
           T VRKI Q+I FL PA  +T LS ID   P   ++  +       +F+ SGLY  HQDI 
Sbjct: 409 TTVRKIMQSIGFLGPAFFLTQLSHID--SPAMAVL-CMACSQGTDAFSQSGLYSNHQDIG 465

Query: 466 PEYASILLYLE 476
           P YA +LL L 
Sbjct: 466 PRYAGVLLGLS 476

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O82390|ANTR1_ARATH Sodium-dependent phosphate transport protein 1, chloroplastic OS=Arabidopsis thaliana GN=ANTR1 PE=1 SV=1

 Score =  286 bits (733), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 154/396 (38%), Positives = 229/396 (57%), Gaps = 15/396 (3%)

Query: 87  ESGQVRGTEEVGRAS----YWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSH 142
           E  +V G  +V   S      P W+  P+R+ ++     AF++CNMD+VN+S+AI+PMS 
Sbjct: 73  EGDKVSGNNDVVSDSPSSIVLPWWEEFPKRWVIVLLCFSAFLLCNMDRVNMSIAILPMSA 132

Query: 143 RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF 202
            +GWN +  GL+QSSFFWGY L+Q+ GG  A   GG++VL  GV+ WS+AT L P+ A  
Sbjct: 133 EYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSIATILTPVAAKL 192

Query: 203 -MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP 261
            +P L++ R  +G+GEGV+  A  +++++ +P++ERSR+++ V+ G+  GSV GL  +P 
Sbjct: 193 GLPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQERSRSLALVYSGMYLGSVTGLAFSPF 252

Query: 262 IIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG 321
           +I   GW SVFY FG LG  W + +    E       TL P       ++ L A      
Sbjct: 253 LIHQFGWPSVFYSFGSLGTVWLTLWLTKAESSPLEDPTLLPE------ERKLIADNCASK 306

Query: 322 ESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILP 381
           E +K +PW+ I     VWA+I  HFC +WG +  L+W+PTY+ + L  NL E+  +S+ P
Sbjct: 307 EPVKSIPWRLILSKPPVWALISCHFCHNWGTFILLTWMPTYYHQVLKFNLMESGLLSVFP 366

Query: 382 PLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMT-LSSIDLGLPHWEIV 440
            +   +  +     AD L++ G   T VRKI QTI FL PA  +T L  ID   P   ++
Sbjct: 367 WMTMAISANAGGWIADTLVSRGFSVTNVRKIMQTIGFLGPAFFLTQLKHID--SPTMAVL 424

Query: 441 GILTAGLALSSFALSGLYCTHQDISPEYASILLYLE 476
             +       +F+ SGLY  HQDI+P Y+ +LL L 
Sbjct: 425 -CMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLS 459

Specific for inorganic phosphate transport across the thylakoid membrane in a sodium dependent manner. Binds glutamate but cannot transport it.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GX78|ANTR2_ARATH Probable anion transporter 2, chloroplastic OS=Arabidopsis thaliana GN=ANTR2 PE=2 SV=1

 Score =  280 bits (715), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 165/452 (36%), Positives = 249/452 (55%), Gaps = 33/452 (7%)

Query: 37  HLYPSEGC-------SRLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFDSESG 89
           H+  S GC       S +R   SIK   +      +  ++  G+     GS     +E+ 
Sbjct: 58  HMRRSFGCFLQPRMDSVIRFRNSIKINRSRAYYKSEESDITEGVVPSADGS-----AEAI 112

Query: 90  QVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSS 149
            V G  +   AS W  W+  P+R+ ++     +F++CNMD+VN+S+AI+PMS  + W+S+
Sbjct: 113 LVEGNLQ--NASPW--WQQFPRRWVIVLLCFSSFLLCNMDRVNMSIAILPMSQEYNWSSA 168

Query: 150 VAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVL 208
             GL+QSSFFWGY L+Q+ GG  A  FGG+ VL  GV+ WS AT + P+ A   +P L++
Sbjct: 169 TVGLIQSSFFWGYLLTQILGGIWADKFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLV 228

Query: 209 SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW 268
            R  +GIGEGV+  A  +++++ IP+ ERSR+++ V+ G+  GSV GL  +P +I   GW
Sbjct: 229 VRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGW 288

Query: 269 ESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVP 328
            SVFY FG LG  WF  +         +   L+     + +  S      +  E +  +P
Sbjct: 289 PSVFYSFGSLGSIWFLLWLKFAYSSPKDDPDLSEEEKKVILGGS------KPREPVTVIP 342

Query: 329 WKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLV 388
           WK I     VWA+I +HFC +WG +  L+W+PTY+++ L  NLTE+  + +LP L   + 
Sbjct: 343 WKLILSKPPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVF 402

Query: 389 TSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLA 448
            +I    AD L++ G+  T VRKI Q+I FL PA  ++       L H +   +    +A
Sbjct: 403 ANIGGWIADTLVSRGLSITNVRKIMQSIGFLGPAFFLS------QLSHVKTPAMAVLCMA 456

Query: 449 LS----SFALSGLYCTHQDISPEYASILLYLE 476
            S    +F+ SGLY  HQDI P YA +LL L 
Sbjct: 457 CSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLS 488

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W0H5|PHT43_ORYSJ Probable anion transporter 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;3 PE=2 SV=1

 Score =  218 bits (556), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 143/369 (38%), Positives = 198/369 (53%), Gaps = 14/369 (3%)

Query: 111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGG 170
           +R K+     LA  +CN D+V +SVAI+P+S  +GW  S AG+VQSSF WGY +S + GG
Sbjct: 96  ERVKVAAMLGLALALCNADRVVMSVAIVPLSQAYGWTPSFAGVVQSSFLWGYLVSPIIGG 155

Query: 171 WLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLS-RVLVGIGEGVSPSAATDLIA 229
            L   +GG++V+  GV +WSLAT L P  A     L LS RVL+G+ EGV+  +  +++ 
Sbjct: 156 ALVDYYGGKRVMAYGVALWSLATFLSPWAAARSLWLFLSTRVLLGMAEGVALPSMNNMVL 215

Query: 230 RSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL 289
           R  P  ERS AV     G   G+  GLLL+P I+   G    F IFGL G  W   +   
Sbjct: 216 RWFPRTERSSAVGIAMAGFQLGNTIGLLLSPIIMSRAGIFGPFVIFGLFGFLWVLVWISA 275

Query: 290 QEGETSNGATLAPRS-NYINMKKSLSASLEEMGESLKDVPWKAIFRSK-AVWAMIYAHFC 347
             G     A ++    +YI   + L  + +  GE L+ VP  +   SK   WA+I A+  
Sbjct: 276 ISGTPGENAQISAHELDYITRGQKLVKT-QSGGERLRKVPPFSKLLSKWPTWALISANAM 334

Query: 348 GSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT 407
            SWG++  LSW+P YF     +NL EAAW S LP +   ++  +A   +D LI  G   T
Sbjct: 335 HSWGYFVILSWMPVYFKTIYHVNLREAAWFSALPWVMMAVLGYVAGVVSDRLIQNGTSIT 394

Query: 408 MVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGI----LTAGLALSSFALSGLYCTHQD 463
           + RKI QTI F+ P V +      LGL   +   I    LT  + L SF  SG     Q+
Sbjct: 395 LTRKIMQTIGFVGPGVAL------LGLNAAKSPVIASAWLTIAVGLKSFGHSGFLVNLQE 448

Query: 464 ISPEYASIL 472
           I+P+YA +L
Sbjct: 449 IAPQYAGVL 457

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XJR2|ANTR3_ARATH Probable anion transporter 3, chloroplastic OS=Arabidopsis thaliana GN=ANTR3 PE=2 SV=2

 Score =  217 bits (552), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 152/457 (33%), Positives = 231/457 (50%), Gaps = 49/457 (10%)

Query: 26  AKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFD 85
           A++N  + +    Y SE   + R + +  +K N   E    + VLTG          G  
Sbjct: 38  ARKNQIRCENLR-YSSESDGKRRNAAA--KKRNQSPERCAAEGVLTG----------GGG 84

Query: 86  SES-GQVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRF 144
           SE+  +VR                +P+R K++  T+    +CN D+V +SVA++P++ + 
Sbjct: 85  SEAIAEVR--------------TMMPERIKVVILTACMMCLCNADRVVMSVAVVPLADKL 130

Query: 145 GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMP 204
           GW+SS  G+VQSSF WGY  S + GG L   +GG++VL  GV +WSLAT L P  A    
Sbjct: 131 GWSSSFLGVVQSSFLWGYIFSSVIGGALVDRYGGKRVLAWGVALWSLATLLTPWAAAHST 190

Query: 205 -GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII 263
             L+  R   G+ EGV+  + T L++R  P++ER+ AV     G   G+V GLLL P ++
Sbjct: 191 LALLCVRAFFGLAEGVAMPSMTTLLSRWFPMDERASAVGISMAGFHMGNVVGLLLTPLML 250

Query: 264 ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGE- 322
            ++G    F +F  LG+ W S +        S+G T  P+ +    +  L   L + G+ 
Sbjct: 251 SSIGISGPFILFASLGLLWVSTW--------SSGVTNNPQDSPFITRSEL--RLIQAGKP 300

Query: 323 ------SLKDVPWKAIFRSK-AVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAA 375
                 S K  P   +  SK   WA+I+A+   +WG++  LSW+P YF    ++NL +AA
Sbjct: 301 VQPSTISPKPNPSLRLLLSKLPTWAIIFANVTNNWGYFVLLSWMPVYFQTVFNVNLKQAA 360

Query: 376 WVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLP 435
           W S LP     +    A   +D LI TG   T VRKI Q+I F+ P   ++L  ++    
Sbjct: 361 WFSALPWATMAISGYYAGAASDFLIRTGHSVTSVRKIMQSIGFMGPG--LSLLCLNFAKS 418

Query: 436 HWEIVGILTAGLALSSFALSGLYCTHQDISPEYASIL 472
                  +T  L+LSSF+ +G     QDI+P+YA  L
Sbjct: 419 PSCAAVFMTIALSLSSFSQAGFLLNMQDIAPQYAGFL 455

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q66GI9|ANTR4_ARATH Probable anion transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ANTR4 PE=2 SV=1

 Score =  205 bits (522), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 195/371 (52%), Gaps = 18/371 (4%)

Query: 111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGG 170
           +R K++   +LA  +CN D+V +SVAI+P+S   GW+ S +G+VQSSF WGY +S + GG
Sbjct: 110 ERVKVVAMLALALALCNADRVVMSVAIVPLSLSRGWSKSFSGIVQSSFLWGYLISPIAGG 169

Query: 171 WLAKIFGGRKVLQTGVLIWSLATALLPLLA-GFMPGLVLSRVLVGIGEGVSPSAATDLIA 229
            L   +GG+ V+  GV +WSLAT L P  A   +  L+ +R +VG+ EGV+     +++A
Sbjct: 170 TLVDRYGGKVVMAWGVALWSLATFLTPWAADSSLWALLAARAMVGVAEGVALPCMNNMVA 229

Query: 230 RSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL 289
           R  P  ERSRAV     G   G+V GL+L+P ++   G    F IFGL G  W     ++
Sbjct: 230 RWFPPTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVIFGLSGFLWL----LV 285

Query: 290 QEGETSNGATLAPRSN-----YINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYA 344
               TS+     P+       YI  KK +S    +   +    P+  +      WA+I A
Sbjct: 286 WLSATSSAPDRHPQITKSELEYIKQKKQISTMENKRISTSGIPPFGRLLSKMPTWAVIVA 345

Query: 345 HFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV 404
           +   SWG +  LSW+P YF+    +NL +AAW S +P         IA  ++D LI  G 
Sbjct: 346 NSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSMMAFTGYIAGFWSDLLIRRGT 405

Query: 405 ETTMVRKICQTIAFLSPAVC---MTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTH 461
             T+ RKI Q+I F+ P +    +T +   L    W     L+  + L SF+  G     
Sbjct: 406 SITLTRKIMQSIGFIGPGIALIGLTTAKQPLVASAW-----LSLAVGLKSFSHLGFLINL 460

Query: 462 QDISPEYASIL 472
           Q+I+PEY+ +L
Sbjct: 461 QEIAPEYSGVL 471

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q53WP9|PHT42_ORYSJ Probable anion transporter 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;2 PE=2 SV=1

 Score =  203 bits (517), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 196/369 (53%), Gaps = 15/369 (4%)

Query: 109 IPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLP 168
           +P+R K++   +   ++CN D+V +SVA++P + ++GW+SS  G+VQSSF WGY  S + 
Sbjct: 119 LPERAKVVALVAAVMLLCNADRVVMSVAVVPFAAQYGWSSSFLGIVQSSFLWGYVFSSMV 178

Query: 169 GGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLS-RVLVGIGEGVSPSAATDL 227
           GG LA  +GG+KV+     +WSLAT L P  A     ++L+ R L G+ EGV+    +  
Sbjct: 179 GGALADRYGGKKVMAGAAALWSLATFLTPWAASQSTIMLLAIRALFGLAEGVAFPTMSTF 238

Query: 228 IARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFK 287
           + +  P  ER+ AV    GG   G+V   L  P I+ ++G    F  F  LG  W S + 
Sbjct: 239 LPKWFPTHERATAVGISMGGFHLGNVISFLATPIIMSHIGLAGTFAFFASLGYLWLSVWL 298

Query: 288 ILQEGETSNGATLAPRS-NYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF 346
              E +  +  T++      I   +S S        SL++     I     +WA+I A+ 
Sbjct: 299 FNVESDPLDSRTISKSELQLILAGRSASKIQGSKFPSLRE-----ILSKIEMWAIIVANV 353

Query: 347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET 406
             +WG++  LSW+P YF    ++NL +AAW S +P     L   +A   AD LI +G   
Sbjct: 354 VNNWGYFVLLSWMPVYFKTVYNVNLKQAAWFSAIPWAVMALSGYVAGASADFLIKSGFSV 413

Query: 407 TMVRKICQTIAFLSPAV---CMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQD 463
            +VRKI Q+I F+ P V   C+  +      P    V ++T  L+LSSF+ +G +C  QD
Sbjct: 414 ALVRKIMQSIGFIGPGVSLLCLRFAQT----PSVAAV-LMTIALSLSSFSQAGYFCNVQD 468

Query: 464 ISPEYASIL 472
           I+P+YA  L
Sbjct: 469 IAPKYAGSL 477

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	477
255586001	533	Inner membrane transport protein yjjL, p	0.972	0.870	0.741	0.0
224120476	543	predicted protein [Populus trichocarpa]	0.989	0.869	0.734	0.0
359484723	526	PREDICTED: probable anion transporter 6,	0.972	0.882	0.725	0.0
224144091	535	predicted protein [Populus trichocarpa]	0.979	0.872	0.724	0.0
356546138	525	PREDICTED: probable anion transporter 6,	0.955	0.868	0.689	0.0
356562936	524	PREDICTED: probable anion transporter 6,	0.955	0.870	0.688	0.0
449443273	538	PREDICTED: probable anion transporter 6,	0.880	0.780	0.722	0.0
357478369	541	hypothetical protein MTR_4g116030 [Medic	0.903	0.796	0.695	1e-178
297812223	517	hypothetical protein ARALYDRAFT_910078 [	0.924	0.852	0.664	1e-175
42567984	517	putative anion transporter 6 [Arabidopsi	0.935	0.862	0.665	1e-174

>gi|255586001|ref|XP_002533670.1| Inner membrane transport protein yjjL, putative [Ricinus communis] gi|223526438|gb|EEF28716.1| Inner membrane transport protein yjjL, putative [Ricinus communis]

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/480 (74%), Positives = 399/480 (83%), Gaps = 16/480 (3%)

Query: 1   MAKLTLGAEKF--FVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKEN 58
           MAK TL   K   F F  N ++    F   +  K +  HL PS+   + RV CS+KEKEN
Sbjct: 1   MAKFTLINNKADNFCFLSNNTNTHASFFNNSCLKFKNSHLIPSKRILKFRVLCSVKEKEN 60

Query: 59  VKEETDKFDEVLTGLRVD---EPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKL 115
           VKE +++ +EV++GLRV+   + G   G DS      G +EVG    WPPWKNIPQRYKL
Sbjct: 61  VKE-SERVNEVVSGLRVEGLKQTGLQLGNDS------GLQEVGFDWNWPPWKNIPQRYKL 113

Query: 116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI 175
           IGTTSLAFVICNMDKVNLSVAIIPMSH+FGWN+S+AGLVQSSFFWGYALSQLPGGWL+KI
Sbjct: 114 IGTTSLAFVICNMDKVNLSVAIIPMSHQFGWNASMAGLVQSSFFWGYALSQLPGGWLSKI 173

Query: 176 FGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE 235
           FGGRKVL+ GVL+WSLATA +PLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIAR IPLE
Sbjct: 174 FGGRKVLKIGVLVWSLATAFVPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARLIPLE 233

Query: 236 ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETS 295
           ERSRAV+FVFGGLS GSVAGLLLAPP+I+  GWESVFYIFG LGIAWF  F+ L+E ++S
Sbjct: 234 ERSRAVAFVFGGLSVGSVAGLLLAPPLIQIFGWESVFYIFGFLGIAWFLTFQFLEEEQSS 293

Query: 296 N--GATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHY 353
              G T +P+S Y  ++KS + SL E+  SLKDVPWKA F ++AVWAMIYAHFCGSWGHY
Sbjct: 294 FAIGPTASPQSTY--LEKSWNTSLPELSSSLKDVPWKAFFETRAVWAMIYAHFCGSWGHY 351

Query: 354 TCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKIC 413
           TCLSWLP+YFSEEL+LNLTEAAWVSILPPLASV VTSIAAQFADNLIA GVETT VRKIC
Sbjct: 352 TCLSWLPSYFSEELNLNLTEAAWVSILPPLASVFVTSIAAQFADNLIANGVETTTVRKIC 411

Query: 414 QTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILL 473
           QT+AFLSPAVCMTLSS+DLGLP WEIVGIL+ GLALSSFALSGLYCTHQDISPEYASILL
Sbjct: 412 QTVAFLSPAVCMTLSSVDLGLPPWEIVGILSGGLALSSFALSGLYCTHQDISPEYASILL 471

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120476|ref|XP_002331057.1| predicted protein [Populus trichocarpa] gi|222872987|gb|EEF10118.1| predicted protein [Populus trichocarpa]

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/482 (73%), Positives = 388/482 (80%), Gaps = 10/482 (2%)

Query: 1   MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVK 60
           MA  T  AE F   +H+T++   +     S K     L  S+     RV C IKEKENV 
Sbjct: 1   MANFTFKAENFSSLSHHTNTQTSLLNTTTSFKTNSLRLLHSKNSLTFRVWCGIKEKENVT 60

Query: 61  EETDKFDEVLTG-LRVDE----PGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKL 115
             +++  +VLTG  RVDE     GS   F+ + G   G+ EVG    WPPWKNIPQRYKL
Sbjct: 61  G-SERVPDVLTGPKRVDELDPKRGSSLDFEQKLGNDSGSSEVGFDWNWPPWKNIPQRYKL 119

Query: 116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI 175
           IGTTSLAFVICNMDKVNLSVAIIPMSH+FGWN+S AGLVQSSFFWGYALSQLPGGWLAKI
Sbjct: 120 IGTTSLAFVICNMDKVNLSVAIIPMSHQFGWNASTAGLVQSSFFWGYALSQLPGGWLAKI 179

Query: 176 FGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIAR----S 231
           FGGRKVL+ GVL WS+ATALLP LAG+MPGLVLSRVLVGIGEGVSPSAATDLIAR    S
Sbjct: 180 FGGRKVLKFGVLTWSVATALLPFLAGYMPGLVLSRVLVGIGEGVSPSAATDLIARHTLMS 239

Query: 232 IPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQE 291
           IPLEERSRAV+FVFGGLS GSV GLLLAPP+I+N GW SVFYIFG LG+AWF GF+ L+E
Sbjct: 240 IPLEERSRAVAFVFGGLSVGSVIGLLLAPPLIQNFGWASVFYIFGFLGLAWFLGFQYLEE 299

Query: 292 GETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWG 351
           G+ S+ A  A R   I+M+KS S SL  +G SLKDVPWKA FR+ AVWAMIYAHFCGSWG
Sbjct: 300 GQASHSAKPASRPQSIHMEKSFSNSLAALGGSLKDVPWKAFFRTPAVWAMIYAHFCGSWG 359

Query: 352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRK 411
           HY CLSWLP+YFSEELSLNLTEAAWVSILPPLASV VTS AAQ ADNLIA GVETT VRK
Sbjct: 360 HYNCLSWLPSYFSEELSLNLTEAAWVSILPPLASVFVTSFAAQLADNLIANGVETTTVRK 419

Query: 412 ICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASI 471
           ICQTIAFLSPA+CMTLSS+DLGLP WEIVGILT GLALSSFALSGLYCTHQD+SPEYASI
Sbjct: 420 ICQTIAFLSPALCMTLSSVDLGLPPWEIVGILTCGLALSSFALSGLYCTHQDMSPEYASI 479

Query: 472 LL 473
           LL
Sbjct: 480 LL 481

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484723|ref|XP_002263200.2| PREDICTED: probable anion transporter 6, chloroplastic-like [Vitis vinifera]

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/473 (72%), Positives = 390/473 (82%), Gaps = 9/473 (1%)

Query: 1   MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVK 60
           MAK     E    F  +T+S         S K ++  ++ S+  S+LRV  +I+ KE+V 
Sbjct: 1   MAKFAFTTENICCFPRHTNS----LFNNTSLKHRQLLIFSSKQRSQLRVFSAIRGKESVT 56

Query: 61  EETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKLIGTTS 120
           E     + V+TGLRVDE  + S   S++       EVG    WPPWKN+PQRYKLIGTTS
Sbjct: 57  ET----ESVITGLRVDELDN-SASASDAEGQEEGGEVGFDWNWPPWKNLPQRYKLIGTTS 111

Query: 121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK 180
           LAFV+CNMDKVNLSVAIIPMSH+FGWNSS AGLVQSSFFWGYALSQLPGGWLAKIFGGRK
Sbjct: 112 LAFVVCNMDKVNLSVAIIPMSHQFGWNSSTAGLVQSSFFWGYALSQLPGGWLAKIFGGRK 171

Query: 181 VLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRA 240
           VL+ GVL WSLATAL+P+LAGFMPGLVLSR+LVGIGEGVSPSAATDLIARSIPLEERSRA
Sbjct: 172 VLEIGVLTWSLATALVPVLAGFMPGLVLSRILVGIGEGVSPSAATDLIARSIPLEERSRA 231

Query: 241 VSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATL 300
           V+FVFGGLS GSV GLLLAPP+I+N GWE+VFYIFG+LGIAWF GF+ ++E + S  A L
Sbjct: 232 VAFVFGGLSVGSVTGLLLAPPLIQNFGWEAVFYIFGILGIAWFLGFQFVKEEQPSFVADL 291

Query: 301 APRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLP 360
            P S  I+ KKSL+ SL+++  SLKDVPWKA F+++AVWAMIY HFCGSWGHYTCLSWLP
Sbjct: 292 IPWSRTISSKKSLNTSLKDLDASLKDVPWKAFFQTRAVWAMIYTHFCGSWGHYTCLSWLP 351

Query: 361 TYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLS 420
           TYFSEEL+LNLTEAAWVS+LPPLAS+ VT+IA+Q ADNLIA GVETT VRKICQTIAFLS
Sbjct: 352 TYFSEELNLNLTEAAWVSVLPPLASIFVTTIASQLADNLIANGVETTTVRKICQTIAFLS 411

Query: 421 PAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILL 473
           PAVCMTLSS+DLG+P WEIVGILT GLALSSFALSGLYCTHQDISPEYASILL
Sbjct: 412 PAVCMTLSSLDLGIPPWEIVGILTGGLALSSFALSGLYCTHQDISPEYASILL 464

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144091|ref|XP_002325183.1| predicted protein [Populus trichocarpa] gi|222866617|gb|EEF03748.1| predicted protein [Populus trichocarpa]

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/479 (72%), Positives = 381/479 (79%), Gaps = 12/479 (2%)

Query: 1   MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVK 60
           MA LTL A+ F   +HNT++   VF    S K    +   S    + RV C +KEKENVK
Sbjct: 1   MANLTLKAKSFCSLSHNTNTQTSVFKTTTSFKNNSLNFLHSGNSLKFRVWCGVKEKENVK 60

Query: 61  EETDKFDEVLTGLR-VDE----PGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKL 115
           E  ++  +VL GL+  DE     GS   F+   G   G+ EVG    WPPWKNIP RYKL
Sbjct: 61  EG-ERVPDVLAGLKKADELDPKRGSSLDFEQRLGDDSGSSEVGFDWKWPPWKNIPLRYKL 119

Query: 116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI 175
           IGTTSLAFVICNMDKVNLSVAIIPMSH+FGWN+S AGLVQSSFFWGYALSQLPGGWLAKI
Sbjct: 120 IGTTSLAFVICNMDKVNLSVAIIPMSHQFGWNASTAGLVQSSFFWGYALSQLPGGWLAKI 179

Query: 176 FGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE 235
           FGGRKVLQ GVL WS+ATALLP LAG+MPG VLSRVLVGIGEGVSPSAATDLIAR     
Sbjct: 180 FGGRKVLQIGVLTWSVATALLPFLAGYMPGFVLSRVLVGIGEGVSPSAATDLIAR----- 234

Query: 236 ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETS 295
            RSRAV+FVFGGLS GSV GLLLAPP+I+N GW SVFYIFG LG+AWF GF+ L+EG+ S
Sbjct: 235 HRSRAVAFVFGGLSVGSVTGLLLAPPLIQNFGWASVFYIFGFLGVAWFLGFQYLEEGQAS 294

Query: 296 NGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC 355
             A    RS  I  +KS S +L E+G SLKDVPWKA F++ AVWAMIYAHFCGSWGHYTC
Sbjct: 295 FAAKPTSRSQTIYSEKSSSNALAELGGSLKDVPWKAFFQTPAVWAMIYAHFCGSWGHYTC 354

Query: 356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQT 415
           LSWLP+YFSEELSLNLTEAAWVSILPPLASV VTSIAAQ AD LI+ GVE T VRKICQT
Sbjct: 355 LSWLPSYFSEELSLNLTEAAWVSILPPLASVFVTSIAAQLADKLISNGVEITTVRKICQT 414

Query: 416 IAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSG-LYCTHQDISPEYASILL 473
           IAFLSPA+CMTLSS+DLGLP WEIVGILTAGLALSSFALSG LYCTHQD+SPEYASILL
Sbjct: 415 IAFLSPALCMTLSSVDLGLPPWEIVGILTAGLALSSFALSGRLYCTHQDMSPEYASILL 473

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546138|ref|XP_003541488.1| PREDICTED: probable anion transporter 6, chloroplastic-like [Glycine max]

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/480 (68%), Positives = 381/480 (79%), Gaps = 24/480 (5%)

Query: 1   MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVK 60
           MA+LTL  +    F+H   +       R +S  Q+FH + S     LR+S  +   +   
Sbjct: 1   MARLTLRPDNSCFFSHTQRANSHTPFTRTTS-FQRFHFHLSSSNHTLRLSRIVSSAQQNA 59

Query: 61  EETDKFD------EVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYK 114
           +ET +        +VLT L+V+E             V    E   +  WPPWKN+PQRYK
Sbjct: 60  KETQRVSMAKAKAKVLTDLQVEE-------------VEKQHET-LSWNWPPWKNLPQRYK 105

Query: 115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK 174
           LIGTTSLAF+ICNMDKVNLS+AIIPMSH+FGWNSS AGLVQSSFFWGYALSQLPGGWLAK
Sbjct: 106 LIGTTSLAFIICNMDKVNLSIAIIPMSHQFGWNSSTAGLVQSSFFWGYALSQLPGGWLAK 165

Query: 175 IFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPL 234
           IFGG  VL+ GVLIWS+ATAL+P LAG+MPGL+LSRVLVGIGEGVSPSAATDLIARSIPL
Sbjct: 166 IFGGGAVLEVGVLIWSVATALVPFLAGYMPGLLLSRVLVGIGEGVSPSAATDLIARSIPL 225

Query: 235 EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGET 294
           EERSRAV+ VFGGLS GSV GLLLAPP+I+NLGWESVFYIFGLLGIAWF GF++L+ GET
Sbjct: 226 EERSRAVALVFGGLSVGSVMGLLLAPPLIQNLGWESVFYIFGLLGIAWFLGFQVLEGGET 285

Query: 295 S-NGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHY 353
             N  +L+   +   M +S   SL E+  SLKDVPWKA F+++AVWAMIYAHFCGSWGHY
Sbjct: 286 QLNAESLSSAQDI--MTQSWKTSLRELNGSLKDVPWKAFFQNRAVWAMIYAHFCGSWGHY 343

Query: 354 TCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKIC 413
            CLSWLPT+FSEEL+LNLTEAAWVSILPPLAS+ VTS+AAQ ADNLI+ GVETT+VRKIC
Sbjct: 344 NCLSWLPTFFSEELNLNLTEAAWVSILPPLASIFVTSLAAQLADNLISRGVETTVVRKIC 403

Query: 414 QTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILL 473
           Q+IAFLSPA+CMTLSS+DLGLP WEIVGILT+GLALSSFALSGLYCTHQD+SPEYASILL
Sbjct: 404 QSIAFLSPAICMTLSSLDLGLPPWEIVGILTSGLALSSFALSGLYCTHQDMSPEYASILL 463

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562936|ref|XP_003549724.1| PREDICTED: probable anion transporter 6, chloroplastic-like [Glycine max]

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/479 (68%), Positives = 380/479 (79%), Gaps = 23/479 (4%)

Query: 1   MAKLTLGAEKFFVFAH-NTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCS----IKE 55
           MA+LTL  +    F+H   +     F +  S +R  FHL PS    RLR+  S     KE
Sbjct: 1   MARLTLRPDNSCFFSHIQRAYSHTPFTRTTSFQRFHFHLSPSNHTLRLRIVSSSQQNAKE 60

Query: 56  KENVKEETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKL 115
            + V     K  +VLT L+V+E                 +    +  WPPWKN+PQRYKL
Sbjct: 61  TQRVSMAKAK-AKVLTDLQVEE--------------MEKQHETLSWNWPPWKNLPQRYKL 105

Query: 116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI 175
           IGTTSLAFVICNMDKVNLS+AIIPMSH+FGWNS+ AGLVQSSFFWGYALSQLPGGWLAKI
Sbjct: 106 IGTTSLAFVICNMDKVNLSIAIIPMSHQFGWNSTTAGLVQSSFFWGYALSQLPGGWLAKI 165

Query: 176 FGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE 235
           FGG  VL+ GVLIWS+ATA +P ++G+MPGL+LSRVLVGIGEGVSPSAATDLIARSIPLE
Sbjct: 166 FGGGTVLEVGVLIWSVATAFVPFISGYMPGLLLSRVLVGIGEGVSPSAATDLIARSIPLE 225

Query: 236 ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETS 295
           ERSRAV+FVFGGLS GSV GLLLAPP+I+NLGWESVFYIFGLLGIAWF GF++L+ GET 
Sbjct: 226 ERSRAVAFVFGGLSVGSVMGLLLAPPLIQNLGWESVFYIFGLLGIAWFLGFQVLEGGETQ 285

Query: 296 -NGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYT 354
            N  +L+  S+   M +S   SL E+  SLK+VPWKA F+++AVWAMIYAHFCGSWGHY 
Sbjct: 286 LNAESLS--SDQDTMTQSWKTSLRELNGSLKEVPWKAFFQNRAVWAMIYAHFCGSWGHYN 343

Query: 355 CLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQ 414
           CLSWLPT+FSEEL+LNLTEAAWVSILPPLAS+ VT +AAQ ADNLI+ GVE T+VRKICQ
Sbjct: 344 CLSWLPTFFSEELNLNLTEAAWVSILPPLASIFVTGLAAQLADNLISRGVEATVVRKICQ 403

Query: 415 TIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILL 473
           +IAFLSPA+CMTLSS+DLGLP WEIVGILT+GLALSSFALSGLYCTHQD+SPEYASILL
Sbjct: 404 SIAFLSPAICMTLSSLDLGLPPWEIVGILTSGLALSSFALSGLYCTHQDMSPEYASILL 462

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443273|ref|XP_004139404.1| PREDICTED: probable anion transporter 6, chloroplastic-like [Cucumis sativus]

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/443 (72%), Positives = 364/443 (82%), Gaps = 23/443 (5%)

Query: 47  LRVSCSIKEKENVKEETDKFDEVLTGLRVD---EPGSVSGFDSESGQVRGTEEVGRASYW 103
           LRV CSIKEKENVK   D    VL+GLRVD     GSVS  +++     G +EVG    W
Sbjct: 41  LRVCCSIKEKENVKGNED-ISPVLSGLRVDASERSGSVSKSENDLSSGHGIDEVGSNLNW 99

Query: 104 PPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYA 163
           PPW+N+P RYKLIGTT+LAFVICNMDKVNLSVAIIPMSH+FGWNSSVAGLVQSSFFWGYA
Sbjct: 100 PPWRNVPDRYKLIGTTALAFVICNMDKVNLSVAIIPMSHQFGWNSSVAGLVQSSFFWGYA 159

Query: 164 LSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSA 223
           +SQLPGGWLAKIFGGRKVL+ GVL WSLATAL+P LAG+MPGL+ SRVLVGIGEGVSPSA
Sbjct: 160 MSQLPGGWLAKIFGGRKVLEIGVLTWSLATALVPFLAGYMPGLIFSRVLVGIGEGVSPSA 219

Query: 224 ATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWF 283
           ATDLIARSIPL+ERSRAV+FVFGGLS GSV+GLLL+P +I+N GWESVFYIFG LGIAWF
Sbjct: 220 ATDLIARSIPLQERSRAVAFVFGGLSVGSVSGLLLSPSLIQNFGWESVFYIFGFLGIAWF 279

Query: 284 SGFKILQ-------------EGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWK 330
           +GF+ L              E E+ + + L  + +    K      L+++  +LK+VPW+
Sbjct: 280 AGFQFLDGQSSGPLKSISVVESESDSDSVLPKKKSTTPFK------LQQLPAALKEVPWR 333

Query: 331 AIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTS 390
           A      VWAMIYAHFCGSWGHYTCLSWLPTYFSEEL+LNLTEAAWVSILPPLAS+ VTS
Sbjct: 334 AFLEYPPVWAMIYAHFCGSWGHYTCLSWLPTYFSEELNLNLTEAAWVSILPPLASIFVTS 393

Query: 391 IAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALS 450
           IA+Q ADNLI+ GV+TT VRKICQT+AF+SPAVCMTLSS+DLGLP WE+VGILT+GLALS
Sbjct: 394 IASQLADNLISNGVDTTKVRKICQTVAFVSPAVCMTLSSVDLGLPPWEVVGILTSGLALS 453

Query: 451 SFALSGLYCTHQDISPEYASILL 473
           SFALSGLYCTHQDISPEYAS+LL
Sbjct: 454 SFALSGLYCTHQDISPEYASVLL 476

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478369|ref|XP_003609470.1| hypothetical protein MTR_4g116030 [Medicago truncatula] gi|355510525|gb|AES91667.1| hypothetical protein MTR_4g116030 [Medicago truncatula]

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 320/460 (69%), Positives = 364/460 (79%), Gaps = 29/460 (6%)

Query: 28  RNSSKRQKFHLYPSEGCSRLR----VSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSG 83
           + + +R  FH  PS+   R +    VSCS   ++++KE  +K  +       D    V  
Sbjct: 35  KTTFQRFHFHFTPSKLIHRTKQRTVVSCS-NTQQDIKETHNKLSKTKINALSDLDDDVEL 93

Query: 84  FDSESGQVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHR 143
               SG             WP WKN+P RYKLIGTTSLAFVICNMDKVNLS+AIIPMSH+
Sbjct: 94  EQHLSGN------------WPSWKNLPLRYKLIGTTSLAFVICNMDKVNLSIAIIPMSHQ 141

Query: 144 FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFM 203
           FGWNSS AGLVQSSFFWGYALSQLPGGWLAKIFGGR VL  GVLIWS+ATAL+P LAG+M
Sbjct: 142 FGWNSSTAGLVQSSFFWGYALSQLPGGWLAKIFGGRNVLVVGVLIWSVATALVPFLAGYM 201

Query: 204 PGLVLSRVLVGIGEGVSPSAATDLIAR---------SIPLEERSRAVSFVFGGLSFGSVA 254
           PGL+L+R+LVGIGEGVSPSAATDLIAR         SIPLEERSRAV+FVFGGLS GSV 
Sbjct: 202 PGLILTRILVGIGEGVSPSAATDLIARHVNIQIHFWSIPLEERSRAVAFVFGGLSVGSVL 261

Query: 255 GLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGA-TLAPRSNYINMKKSL 313
           GLL APP+I+++GWESVFYIFGLLGIAWF GF+ L+EGET   A + +P     NM +S 
Sbjct: 262 GLLFAPPLIQSIGWESVFYIFGLLGIAWFIGFQFLEEGETRLAAESFSPAQG--NMTQSW 319

Query: 314 SASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTE 373
             SL+EM  SLKDVPWKA F+S+AVWAMIYAHFCGSWGHYTCLSWLPTYFS+EL LNLTE
Sbjct: 320 QTSLKEMNSSLKDVPWKAFFQSRAVWAMIYAHFCGSWGHYTCLSWLPTYFSQELDLNLTE 379

Query: 374 AAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLG 433
           AAWVSILPPLAS+ VTSIA+Q AD+LI+ GVETT VRKICQ+IAFLSPA+CMTL+S+DLG
Sbjct: 380 AAWVSILPPLASIFVTSIASQLADSLISKGVETTTVRKICQSIAFLSPALCMTLASLDLG 439

Query: 434 LPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILL 473
           LP WE+VG+LT GLALSSFALSGLYCTHQDISPEYASILL
Sbjct: 440 LPPWEMVGLLTGGLALSSFALSGLYCTHQDISPEYASILL 479

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812223|ref|XP_002873995.1| hypothetical protein ARALYDRAFT_910078 [Arabidopsis lyrata subsp. lyrata] gi|297319832|gb|EFH50254.1| hypothetical protein ARALYDRAFT_910078 [Arabidopsis lyrata subsp. lyrata]

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 323/486 (66%), Positives = 365/486 (75%), Gaps = 45/486 (9%)

Query: 1   MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKF----HLYPSEGCSRL---RVSCSI 53
           MA+LTL     F            F+    + +Q F     ++P    + L   RV CS 
Sbjct: 1   MARLTLRPHNHF------------FSSPIHAHKQPFLSVYTIFPHHHHNPLIKSRVKCSA 48

Query: 54  KEKENVKEET-----DKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKN 108
              E V+E       D  ++    L + E  S               E G    WPPWKN
Sbjct: 49  SGTERVRESKKLPPKDPIEDPKPLLPIPEVLST--------------ETGFEQNWPPWKN 94

Query: 109 IPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLP 168
           IPQRYKLIG TSLAFVICNMDKVNLS+AIIPMSH+FGW+SSVAGLVQSSFFWGYALSQLP
Sbjct: 95  IPQRYKLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQSSFFWGYALSQLP 154

Query: 169 GGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLI 228
           GGWL+KIFGGRKVL+ GV  WS ATAL+PLLAGFMPGL+ SR+LVGIGEGVSPSAATDLI
Sbjct: 155 GGWLSKIFGGRKVLEIGVFTWSFATALVPLLAGFMPGLIFSRILVGIGEGVSPSAATDLI 214

Query: 229 ARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKI 288
           AR+IP++ERSRAV FVFGGLS GSV GLLLAPPIIE   WESVFY+FGLLG+ WF GF+ 
Sbjct: 215 ARTIPVKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLFGLLGVGWFVGFQF 274

Query: 289 LQEGETSNGATLAPRSNYI-NMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFC 347
           L E E S       + N I N  KS +A+ EE+G SLK++PWK+ F+S AVWAMIY HFC
Sbjct: 275 LNEEEVSY------KGNEISNSHKSENATKEELGSSLKEIPWKSFFQSSAVWAMIYTHFC 328

Query: 348 GSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT 407
           GSWGHYTCLSWLPTYFSE L+LNLTEAAWVSILPPLAS++VTS+A+QFAD LI  GVETT
Sbjct: 329 GSWGHYTCLSWLPTYFSEALNLNLTEAAWVSILPPLASIVVTSLASQFADYLITNGVETT 388

Query: 408 MVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPE 467
            VRKICQTIAF+SPA+CMTLSS+D+GLP WEIVGILTAGLALSSFALSGLYCTHQDISPE
Sbjct: 389 TVRKICQTIAFVSPAICMTLSSVDIGLPPWEIVGILTAGLALSSFALSGLYCTHQDISPE 448

Query: 468 YASILL 473
           YASILL
Sbjct: 449 YASILL 454

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567984|ref|NP_197538.2| putative anion transporter 6 [Arabidopsis thaliana] gi|122214318|sp|Q3E9A0.1|ANTR6_ARATH RecName: Full=Probable anion transporter 6, chloroplastic; AltName: Full=Phosphate transporter PHT4;5; Flags: Precursor gi|332005454|gb|AED92837.1| putative anion transporter 6 [Arabidopsis thaliana]

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 320/481 (66%), Positives = 363/481 (75%), Gaps = 35/481 (7%)

Query: 1   MAKLTLGAEKFFVFAHNTSSGRLVFAKRNS--SKRQKFHLYPSEGCSRLRVSCSIKEKEN 58
           MA+LTL         HN      ++A +    S    F  +      + RV CS    E 
Sbjct: 1   MARLTLRP-------HNHFFSSPIYAHKQPFLSVYTIFPHHHQNPLIKSRVKCSASGTER 53

Query: 59  VKEET-----DKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRY 113
           V+E       D  ++    L + E  S               E G    WPPWKNIPQRY
Sbjct: 54  VRESKKLPPKDPIEDPKPQLPIPEVLST--------------ETGFEQNWPPWKNIPQRY 99

Query: 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLA 173
           KLIG TSLAFVICNMDKVNLS+AIIPMSH+FGW+SSVAGLVQSSFFWGYALSQLPGGWL+
Sbjct: 100 KLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQSSFFWGYALSQLPGGWLS 159

Query: 174 KIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIP 233
           KIFGGRKVL+ GV  WS ATAL+PLLAGFMPGL+ SR+LVGIGEGVSPSAATDLIAR+IP
Sbjct: 160 KIFGGRKVLEIGVFTWSFATALVPLLAGFMPGLIFSRILVGIGEGVSPSAATDLIARTIP 219

Query: 234 LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGE 293
           ++ERSRAV FVFGGLS GSV GLLLAPPIIE   WESVFY+FGLLG+ WF GF+ L E E
Sbjct: 220 VKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLFGLLGVGWFVGFQFLNEEE 279

Query: 294 TSNGATLAPRSNYINM-KKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH 352
            S       + N I+   KS +A+ EE+G SLK++PWK+ F+S AVWAMIY HFCGSWGH
Sbjct: 280 VSY------KGNEISTSHKSENATKEELGSSLKEIPWKSFFQSPAVWAMIYTHFCGSWGH 333

Query: 353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKI 412
           YTCLSWLPTYFSE LSLNLTEAAWVSILPPLAS++VTS+A+QFAD LI  GV+TT VRKI
Sbjct: 334 YTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQFADYLITNGVDTTTVRKI 393

Query: 413 CQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASIL 472
           CQTIAF++PA+CMTLSS+D+GLP WEIVGILTAGLALSSFALSGLYCTHQDISPEYASIL
Sbjct: 394 CQTIAFVAPAICMTLSSVDIGLPPWEIVGILTAGLALSSFALSGLYCTHQDISPEYASIL 453

Query: 473 L 473
           L
Sbjct: 454 L 454

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	477
TAIR|locus:2149199	517	PHT4;5 "phosphate transporter	0.779	0.719	0.749	5.6e-155
TAIR|locus:2060694	512	PHT4;1 "AT2G29650" [Arabidopsi	0.819	0.763	0.374	8.5e-75
TAIR|locus:2126066	541	ANTR2 "AT4G00370" [Arabidopsis	0.897	0.791	0.356	9.9e-71
TAIR|locus:2065615	512	PHT4;2 "AT2G38060" [Arabidopsi	0.748	0.697	0.342	4.9e-53
UNIPROTKB|E1B7R3	495	SLC17A5 "Uncharacterized prote	0.681	0.656	0.336	8.6e-47
UNIPROTKB|F1RQG9	497	SLC17A5 "Uncharacterized prote	0.681	0.653	0.337	1.8e-46
UNIPROTKB|Q9NRA2	495	SLC17A5 "Sialin" [Homo sapiens	0.681	0.656	0.336	7.6e-46
ZFIN|ZDB-GENE-060929-1158	489	slc17a5 "solute carrier family	0.744	0.725	0.326	9.7e-46
UNIPROTKB|E2R8R4	495	SLC17A5 "Uncharacterized prote	0.681	0.656	0.327	1.6e-45
RGD|1311388	495	Slc17a5 "solute carrier family	0.681	0.656	0.324	5.3e-45

TAIR|locus:2149199 PHT4;5 "phosphate transporter 4;5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1511 (537.0 bits), Expect = 5.6e-155, P = 5.6e-155
 Identities = 284/379 (74%), Positives = 317/379 (83%)

Query:    96 EVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQ 155
             E G    WPPWKNIPQRYKLIG TSLAFVICNMDKVNLS+AIIPMSH+FGW+SSVAGLVQ
Sbjct:    82 ETGFEQNWPPWKNIPQRYKLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQ 141

Query:   156 SSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGI 215
             SSFFWGYALSQLPGGWL+KIFGGRKVL+ GV  WS ATAL+PLLAGFMPGL+ SR+LVGI
Sbjct:   142 SSFFWGYALSQLPGGWLSKIFGGRKVLEIGVFTWSFATALVPLLAGFMPGLIFSRILVGI 201

Query:   216 GEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIF 275
             GEGVSPSAATDLIAR+IP++ERSRAV FVFGGLS GSV GLLLAPPIIE   WESVFY+F
Sbjct:   202 GEGVSPSAATDLIARTIPVKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLF 261

Query:   276 GLLGIAWFSGFKILQEGETSNGATLAPRSNYINMK-KSLSASLEEMGESLKDVPWKAIFR 334
             GLLG+ WF GF+ L E E S       + N I+   KS +A+ EE+G SLK++PWK+ F+
Sbjct:   262 GLLGVGWFVGFQFLNEEEVSY------KGNEISTSHKSENATKEELGSSLKEIPWKSFFQ 315

Query:   335 SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQ 394
             S AVWAMIY HFCGSWGHYTCLSWLPTYFSE LSLNLTEAAWVSILPPLAS++VTS+A+Q
Sbjct:   316 SPAVWAMIYTHFCGSWGHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQ 375

Query:   395 FADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGIXXXXXXXXXXXX 454
             FAD LI  GV+TT VRKICQTIAF++PA+CMTLSS+D+GLP WEIVGI            
Sbjct:   376 FADYLITNGVDTTTVRKICQTIAFVAPAICMTLSSVDIGLPPWEIVGILTAGLALSSFAL 435

Query:   455 XXXYCTHQDISPEYASILL 473
                YCTHQDISPEYASILL
Sbjct:   436 SGLYCTHQDISPEYASILL 454

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2060694 PHT4;1 "AT2G29650" [Arabidopsis thaliana (taxid:3702)]

 Score = 735 (263.8 bits), Expect = 8.5e-75, Sum P(2) = 8.5e-75
 Identities = 152/406 (37%), Positives = 228/406 (56%)

Query:    76 DEPGSVSGFDSESGQVRGTEEVGRAS----YWPPWKNIPQRYKLIGTTSLAFVICNMDKV 131
             D+  S + +  E  +V G  +V   S      P W+  P+R+ ++     AF++CNMD+V
Sbjct:    62 DKSESSNSYYVEGDKVSGNNDVVSDSPSSIVLPWWEEFPKRWVIVLLCFSAFLLCNMDRV 121

Query:   132 NLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191
             N+S+AI+PMS  +GWN +  GL+QSSFFWGY L+Q+ GG  A   GG++VL  GV+ WS+
Sbjct:   122 NMSIAILPMSAEYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSI 181

Query:   192 ATALLPLLAGF-MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF 250
             AT L P+ A   +P L++ R  +G+GEGV+  A  +++++ +P++ERSR+++ V+ G+  
Sbjct:   182 ATILTPVAAKLGLPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQERSRSLALVYSGMYL 241

Query:   251 GSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMK 310
             GSV GL  +P +I   GW SVFY FG LG  W + +    E       TL P       +
Sbjct:   242 GSVTGLAFSPFLIHQFGWPSVFYSFGSLGTVWLTLWLTKAESSPLEDPTLLPE------E 295

Query:   311 KSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLN 370
             + L A      E +K +PW+ I     VWA+I  HFC +WG +  L+W+PTY+ + L  N
Sbjct:   296 RKLIADNCASKEPVKSIPWRLILSKPPVWALISCHFCHNWGTFILLTWMPTYYHQVLKFN 355

Query:   371 LTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMT-LSS 429
             L E+  +S+ P +   +  +     AD L++ G   T VRKI QTI FL PA  +T L  
Sbjct:   356 LMESGLLSVFPWMTMAISANAGGWIADTLVSRGFSVTNVRKIMQTIGFLGPAFFLTQLKH 415

Query:   430 IDLGLPHWEIVGIXXXXXXXXXXXXXXXYCTHQDISPEYASILLYL 475
             ID   P   ++ +               Y  HQDI+P Y+ +LL L
Sbjct:   416 IDS--PTMAVLCMACSQGTDAFSQSGL-YSNHQDIAPRYSGVLLGL 458

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0030504 "inorganic diphosphate transmembrane transporter activity" evidence=IGI

GO:0009416 "response to light stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2126066 ANTR2 "AT4G00370" [Arabidopsis thaliana (taxid:3702)]

 Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
 Identities = 157/441 (35%), Positives = 239/441 (54%)

Query:    37 HLYPSEGCS-RLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTE 95
             H+  S GC  + R+   I+ + ++K    +         + E G V   D  +  +    
Sbjct:    58 HMRRSFGCFLQPRMDSVIRFRNSIKINRSRAYYKSEESDITE-GVVPSADGSAEAILVEG 116

Query:    96 EVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQ 155
              +  AS W  W+  P+R+ ++     +F++CNMD+VN+S+AI+PMS  + W+S+  GL+Q
Sbjct:   117 NLQNASPW--WQQFPRRWVIVLLCFSSFLLCNMDRVNMSIAILPMSQEYNWSSATVGLIQ 174

Query:   156 SSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLSRVLVG 214
             SSFFWGY L+Q+ GG  A  FGG+ VL  GV+ WS AT + P+ A   +P L++ R  +G
Sbjct:   175 SSFFWGYLLTQILGGIWADKFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLVVRAFMG 234

Query:   215 IGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYI 274
             IGEGV+  A  +++++ IP+ ERSR+++ V+ G+  GSV GL  +P +I   GW SVFY 
Sbjct:   235 IGEGVAMPAMNNMLSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWPSVFYS 294

Query:   275 FGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFR 334
             FG LG  WF  +         +   L+        K  L  S     E +  +PWK I  
Sbjct:   295 FGSLGSIWFLLWLKFAYSSPKDDPDLSEEEK----KVILGGSKPR--EPVTVIPWKLILS 348

Query:   335 SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQ 394
                VWA+I +HFC +WG +  L+W+PTY+++ L  NLTE+  + +LP L   +  +I   
Sbjct:   349 KPPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGW 408

Query:   395 FADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGIXXXXXXXXXXXX 454
              AD L++ G+  T VRKI Q+I FL PA  ++  S  +  P   ++ +            
Sbjct:   409 IADTLVSRGLSITNVRKIMQSIGFLGPAFFLSQLS-HVKTPAMAVLCMACSQGSDAFSQS 467

Query:   455 XXXYCTHQDISPEYASILLYL 475
                Y  HQDI P YA +LL L
Sbjct:   468 GL-YSNHQDIGPRYAGVLLGL 487

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

TAIR|locus:2065615 PHT4;2 "AT2G38060" [Arabidopsis thaliana (taxid:3702)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 126/368 (34%), Positives = 191/368 (51%)

Query:   109 IPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLP 168
             +P+R K++  T+    +CN D+V +SVA++P++ + GW+SS  G+VQSSF WGY  S + 
Sbjct:    95 MPERIKVVILTACMMCLCNADRVVMSVAVVPLADKLGWSSSFLGVVQSSFLWGYIFSSVI 154

Query:   169 GGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMP-GLVLSRVLVGIGEGVSPSAATDL 227
             GG L   +GG++VL  GV +WSLAT L P  A      L+  R   G+ EGV+  + T L
Sbjct:   155 GGALVDRYGGKRVLAWGVALWSLATLLTPWAAAHSTLALLCVRAFFGLAEGVAMPSMTTL 214

Query:   228 IARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFK 287
             ++R  P++ER+ AV     G   G+V GLLL P ++ ++G    F +F  LG+ W S + 
Sbjct:   215 LSRWFPMDERASAVGISMAGFHMGNVVGLLLTPLMLSSIGISGPFILFASLGLLWVSTWS 274

Query:   288 ILQEGETSN--GATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKA-VWAMIYA 344
                 G T+N   +    RS  + + ++    ++    S K  P   +  SK   WA+I+A
Sbjct:   275 ---SGVTNNPQDSPFITRSE-LRLIQA-GKPVQPSTISPKPNPSLRLLLSKLPTWAIIFA 329

Query:   345 HFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV 404
             +   +WG++  LSW+P YF    ++NL +AAW S LP     +    A   +D LI TG 
Sbjct:   330 NVTNNWGYFVLLSWMPVYFQTVFNVNLKQAAWFSALPWATMAISGYYAGAASDFLIRTGH 389

Query:   405 ETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGIXXXXXXXXXXXXXXXYCTHQDI 464
               T VRKI Q+I F+ P + +   +     P    V                     QDI
Sbjct:   390 SVTSVRKIMQSIGFMGPGLSLLCLNFAKS-PSCAAV-FMTIALSLSSFSQAGFLLNMQDI 447

Query:   465 SPEYASIL 472
             +P+YA  L
Sbjct:   448 APQYAGFL 455

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

UNIPROTKB|E1B7R3 SLC17A5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 460 (167.0 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
 Identities = 112/333 (33%), Positives = 166/333 (49%)

Query:   143 RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF 202
             ++ W++   G +  SFF+GY ++Q+PGG++A   GG+ +L  GVL  ++ T   PL A F
Sbjct:   100 KYQWDAETQGWILGSFFYGYIITQIPGGYVASRSGGKLLLGFGVLGTAVFTLFTPLAADF 159

Query:   203 MPG-LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP 261
               G LV  R L G+GEGV+  A   + +   P  ERS+ +S  + G   G+V  L L+  
Sbjct:   160 GFGALVALRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGV 219

Query:   262 IIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG 321
             I   + W  VFY FGL+GI WF  +  L         T+ P       K+ + +SL+   
Sbjct:   220 ICYYMNWTYVFYFFGLVGIIWFILWICLVSDTPETHKTITPYE-----KEYILSSLKNQL 274

Query:   322 ESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILP 381
              S K VPW  + +S  +WA++ AHF  +W  YT L+ LPTY  E L  N+ E  ++S +P
Sbjct:   275 SSQKSVPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSAVP 334

Query:   382 PLASVLVTSIAAQFADNLIAT-GVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIV 440
              L   L   ++ Q ADNL A     T  VR++   I  + PA+ +  +   +G  +   V
Sbjct:   335 YLGCWLCMILSGQAADNLRARWNFSTLWVRRVFSLIGMIGPAIFLVAAGF-IGCDYSLAV 393

Query:   441 GIXXXXXXXXXXXXXXXYCTHQDISPEYASILL 473
                                 H DI+P YA ILL
Sbjct:   394 AFLTISTTLGGFCSSGFSINHLDIAPSYAGILL 426

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1RQG9 SLC17A5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 458 (166.3 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
 Identities = 113/335 (33%), Positives = 168/335 (50%)

Query:   143 RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF 202
             ++ WN+   G +  SFF+GY ++Q+PGG++A   GG+ +L  G+L  S+ T L PL A F
Sbjct:   100 KYQWNAETQGWILGSFFYGYIITQIPGGYIASRSGGKLLLGFGILGTSVFTLLTPLAADF 159

Query:   203 MPG-LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSR--AVSFVFGGLSFGSVAGLLLA 259
               G L+  R L G+GEGV+  A   + +   P  ERS+  ++S+   G   G+V  L L+
Sbjct:   160 GVGALIALRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAVLGAQLGTVVSLPLS 219

Query:   260 PPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEE 319
               I   L W  VFY+FGL+GI WF  +  L         T++P       K+ + +SL  
Sbjct:   220 GIICFYLNWTYVFYLFGLVGIIWFILWTWLVSDTPDTHRTISPYE-----KEYILSSLRN 274

Query:   320 MGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSI 379
                S K VPW  + +S  +WA++ AHF  +W  YT L+ LPTY  E L  N+ E  ++S 
Sbjct:   275 QLSSQKSVPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSA 334

Query:   380 LPPLASVLVTSIAAQFADNLIAT-GVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWE 438
             +P     +   ++ Q ADNL A     T  VR++   I    PAV +  +   +G  +  
Sbjct:   335 VPYFGCWVCMILSGQAADNLRAKWNFSTLCVRRVFSLIGMFGPAVFLVAAGF-IGCDYSL 393

Query:   439 IVGIXXXXXXXXXXXXXXXYCTHQDISPEYASILL 473
              V                   +H DI+P YA ILL
Sbjct:   394 AVAFLTISTTLGGFCSSGFSISHLDIAPSYAGILL 428

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9NRA2 SLC17A5 "Sialin" [Homo sapiens (taxid:9606)]

 Score = 452 (164.2 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
 Identities = 112/333 (33%), Positives = 167/333 (50%)

Query:   143 RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF 202
             ++ W++   G +  SFF+GY ++Q+PGG++A   GG+ +L  G+L  ++ T   P+ A  
Sbjct:   100 KYQWDAETQGWILGSFFYGYIITQIPGGYVASKIGGKMLLGFGILGTAVLTLFTPIAADL 159

Query:   203 MPG-LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP 261
               G L++ R L G+GEGV+  A   + +   P  ERS+ +S  + G   G+V  L L+  
Sbjct:   160 GVGPLIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGI 219

Query:   262 IIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG 321
             I   + W  VFY FG +GI WF    +L     S+      R ++   K+ + +SL    
Sbjct:   220 ICYYMNWTYVFYFFGTIGIFWF----LLWIWLVSDTPQKHKRISHYE-KEYILSSLRNQL 274

Query:   322 ESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILP 381
              S K VPW  I +S  +WA++ AHF  +W  YT L+ LPTY  E L  N+ E  ++S LP
Sbjct:   275 SSQKSVPWVPILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGFLSSLP 334

Query:   382 PLASVLVTSIAAQFADNLIAT-GVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIV 440
              L S L   ++ Q ADNL A     T  VR+I   I  + PAV +  +   +G  +   V
Sbjct:   335 YLGSWLCMILSGQAADNLRAKWNFSTLCVRRIFSLIGMIGPAVFLVAAGF-IGCDYSLAV 393

Query:   441 GIXXXXXXXXXXXXXXXYCTHQDISPEYASILL 473
                                 H DI+P YA ILL
Sbjct:   394 AFLTISTTLGGFCSSGFSINHLDIAPSYAGILL 426

GO:0006865 "amino acid transport" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0016020 "membrane" evidence=TAS

GO:0005351 "sugar:hydrogen symporter activity" evidence=TAS

GO:0005765 "lysosomal membrane" evidence=IDA;TAS

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IDA

GO:0015739 "sialic acid transport" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0006820 "anion transport" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

ZFIN|ZDB-GENE-060929-1158 slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Danio rerio (taxid:7955)]

 Score = 452 (164.2 bits), Expect = 9.7e-46, Sum P(2) = 9.7e-46
 Identities = 123/377 (32%), Positives = 180/377 (47%)

Query:   113 YKLIGTTSLAFV--ICNMDKVNLSVAI-----IPM-SHR-----FGWNSSVAGLVQSSFF 159
             Y L    S+A V  + N  K N S +I     IP+  H      + WNS   G +  SFF
Sbjct:    52 YALRVNLSVAMVDMLKNSSKANTSSSICPPHNIPVPKHNHTAMVYDWNSETQGWILGSFF 111

Query:   160 WGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPG-LVLSRVLVGIGEG 218
             +GY ++Q+PGG+LA+ +G + +L  G+L   + T L PL A    G L+  RVL GIGEG
Sbjct:   112 YGYIITQIPGGYLARKYGAKWLLGLGILCTVIFTLLTPLAADLGAGYLIAVRVLEGIGEG 171

Query:   219 VSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLL 278
             V+  A   + A   P  ERSR ++  + G   G+V  L L+  I   L W  VFYIFG +
Sbjct:   172 VTYPAMHAMWASWAPPLERSRLLTISYTGAQLGTVVALPLSGQICFYLDWTYVFYIFGAV 231

Query:   279 GIAWFS-GFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKA 337
             G+ WF      +    +S+         YI     +S+   E+  +   +PW +IF+S  
Sbjct:   232 GLLWFFLWICFVSNSPSSHKRITEAEKTYI-----MSSLKNELSPTQDYIPWTSIFKSMP 286

Query:   338 VWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFAD 397
             +WA++ AHF  +W  YT L+ LPTY ++ L  ++ +   +S LP L   L+  +  Q AD
Sbjct:   287 LWAIVVAHFSYNWTFYTLLTLLPTYMNDVLGFSIQQNGMLSALPYLGCWLLALLGGQLAD 346

Query:   398 NLIATGV-ETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGIXXXXXXXXXXXXXX 456
              L    +  T +VRK    +    PAV +  +    G  +   V                
Sbjct:   347 LLRERFLFRTVIVRKAFTVVGMAGPAVFLVAAGYT-GCNYILAVAFLTISSSLGGISASG 405

Query:   457 XYCTHQDISPEYASILL 473
                 H DI+P YA ILL
Sbjct:   406 FNINHLDIAPSYAGILL 422

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|E2R8R4 SLC17A5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 449 (163.1 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
 Identities = 109/333 (32%), Positives = 167/333 (50%)

Query:   143 RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF 202
             R+ W++   G +  SFF+GY ++Q+PGG++A   GG+ +L  G+L  ++ T   P+ A F
Sbjct:   100 RYQWDAETQGWILGSFFYGYIITQIPGGYIASKVGGKLLLGFGILGTAVFTLFTPIAADF 159

Query:   203 MPG-LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP 261
               G L++ R L G+GEGV+  A   + +   P  ERS+ +S  + G   G+V  L L+  
Sbjct:   160 GVGALIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGI 219

Query:   262 IIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG 321
             I   + W  VFY+FG++GI WF  +  L         T++ +      K+ + +SL+   
Sbjct:   220 ICFYMNWTYVFYLFGIVGIIWFILWIFLVSETPETHKTISRQE-----KEYILSSLKNQL 274

Query:   322 ESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILP 381
              S K VPW  + +S  +WA++ AHF  +W  YT L+ LPTY  E L  N+ E   +S LP
Sbjct:   275 SSQKSVPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGLLSALP 334

Query:   382 PLASVLVTSIAAQFADNLIAT-GVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIV 440
                  L   ++ Q ADNL A     T  VR++   I  + PAV +  +   +G  +   V
Sbjct:   335 YFGCWLCMILSGQAADNLRAKWNFSTICVRRVFSLIGMIGPAVFLVAAGF-IGCDYSLAV 393

Query:   441 GIXXXXXXXXXXXXXXXYCTHQDISPEYASILL 473
                                 H DI+P YA ILL
Sbjct:   394 VFLTISTTLGGFCSSGFSINHLDIAPSYAGILL 426

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1311388 Slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Rattus norvegicus (taxid:10116)]

 Score = 446 (162.1 bits), Expect = 5.3e-45, Sum P(2) = 5.3e-45
 Identities = 108/333 (32%), Positives = 167/333 (50%)

Query:   143 RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF 202
             ++ W++   G +  SFF+GY ++Q+PGG++A   GG+ +L  G+L  ++ T   PL A  
Sbjct:   100 KYQWDAETQGWILGSFFYGYIVTQIPGGYMASRIGGKLLLGLGILGTAVFTLFTPLAADL 159

Query:   203 -MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP 261
              +  L++ R L G+GEGV+  A   + +   P  ERS+ ++  + G   G+V  L L+  
Sbjct:   160 GVVALIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLTISYAGAQLGTVISLPLSGI 219

Query:   262 IIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG 321
             I   + W  VFY+FGL+GI WF  +  +         T+   S+Y   K+ + +SL+   
Sbjct:   220 ICYYMNWTYVFYLFGLVGIVWFILWMWIVSDTPETHKTI---SHY--EKEYIVSSLKNQL 274

Query:   322 ESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILP 381
              S K VPW +I +S  +WA++ AHF  +W  YT L+ LPTY  E L  N+ E  ++S LP
Sbjct:   275 SSQKVVPWVSILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGFLSALP 334

Query:   382 PLASVLVTSIAAQFADNL-IATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIV 440
                  L   +  Q AD L +     T  VR+I   I  + PAV +  +   +G  +   V
Sbjct:   335 YFGCWLCMIVCGQAADYLRVKWNFSTISVRRIFSLIGMVGPAVFLVAAGF-IGCDYSLAV 393

Query:   441 GIXXXXXXXXXXXXXXXYCTHQDISPEYASILL 473
                                 H DI+P YA ILL
Sbjct:   394 AFLTISTTLGGFASSGFSINHLDIAPSYAGILL 426

GO:0005764 "lysosome" evidence=IDA

GO:0005765 "lysosomal membrane" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=ISO;IDA

GO:0015739 "sialic acid transport" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3E9A0	ANTR6_ARATH	No assigned EC number	0.6652	0.9350	0.8626	yes	no
Q0IZQ3	PHT45_ORYSJ	No assigned EC number	0.7133	0.6163	0.6242	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	477
TIGR00894	465	TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph	7e-47
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	5e-35
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-32
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	9e-31
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	8e-19
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	6e-17
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	4e-14
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-12
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	1e-11
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	5e-11
COG2271	448	COG2271, UhpC, Sugar phosphate permease [Carbohydr	2e-10
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	4e-10
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-06
TIGR00710	385	TIGR00710, efflux_Bcr_CflA, drug resistance transp	1e-06
PRK03699	394	PRK03699, PRK03699, putative transporter; Provisio	1e-06
TIGR00886	366	TIGR00886, 2A0108, nitrite extrusion protein (nitr	2e-06
COG0738	422	COG0738, FucP, Fucose permease [Carbohydrate trans	5e-06
TIGR02332	412	TIGR02332, HpaX, 4-hydroxyphenylacetate permease	5e-06
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	6e-06
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	3e-05
COG0477	338	COG0477, ProP, Permeases of the major facilitator	3e-05
COG2223	417	COG2223, NarK, Nitrate/nitrite transporter [Inorga	3e-05
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	6e-05
TIGR00890	377	TIGR00890, 2A0111, oxalate/formate antiporter fami	7e-05
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	1e-04
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	1e-04
TIGR00900	365	TIGR00900, 2A0121, H+ Antiporter protein	1e-04
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	1e-04
PRK03893	496	PRK03893, PRK03893, putative sialic acid transport	3e-04
PRK11102	377	PRK11102, PRK11102, bicyclomycin/multidrug efflux	9e-04
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	0.001
TIGR04259	405	TIGR04259, oxa_formateAnti, oxalate/formate antipo	0.001
PRK03633	381	PRK03633, PRK03633, putative MFS family transporte	0.002
TIGR00712	438	TIGR00712, glpT, glycerol-3-phosphate transporter	0.002
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	0.003

>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter

 Score =  168 bits (427), Expect = 7e-47
 Identities = 94/333 (28%), Positives = 163/333 (48%), Gaps = 10/333 (3%)

Query: 144 FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFM 203
           F W+ ++ GL+ SS F+G  + Q+P G+LA  +  +  +  G+ + S+ + ++P  AG  
Sbjct: 71  FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG 130

Query: 204 PGLVL-SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI 262
             LV+  RV+ G+ +G    A   +I +  P +ERSR +     G   G+   L ++  +
Sbjct: 131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWL 190

Query: 263 IE-NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASL-EEM 320
            E   GW  +FY+FG++G AW   + +    + S    ++        KK +++SL  + 
Sbjct: 191 CESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCIS-----KFEKKYINSSLQGQK 245

Query: 321 GESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSIL 380
           G + + +P KAI +S  VWA+ +A F   W +    ++LPT+ S  L ++  E   +S L
Sbjct: 246 GSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSL 305

Query: 381 PPLASVLVTSIAAQFADNLIATGV-ETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEI 439
           P L + L +  A   AD L ++     T  RKI   I  L P +        L    +  
Sbjct: 306 PYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPY-LSAAFYLT 364

Query: 440 VGILTAGLALSSFALSGLYCTHQDISPEYASIL 472
           + ILT   A+SS  L+G+     D++P +   +
Sbjct: 365 IIILTLANAVSSGPLAGVLINSLDLAPRFLGFI 397

[Transport and binding proteins, Anions]. Length = 465

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score =  134 bits (339), Expect = 5e-35
 Identities = 78/268 (29%), Positives = 120/268 (44%), Gaps = 3/268 (1%)

Query: 121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK 180
           L  VI  +D+ NLS A   +    G +++  G V S+F WGY + Q PGGWL   FG RK
Sbjct: 1   LVTVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARK 60

Query: 181 VLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRA 240
            L   ++IW + T L      +   L + RVL+G  E         ++A   P  ER+ A
Sbjct: 61  TLAVFIVIWGVFTGLQAFAGAY-VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATA 119

Query: 241 VSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW-FSGFKILQEGETSNGAT 299
           VS        G + G  L   I+ +  W+  F I G+LGI W     K + +        
Sbjct: 120 VSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAK-W 178

Query: 300 LAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWL 359
           L     YI +   L+    +   + K    K + + + VW +    F  + G    L+W 
Sbjct: 179 LTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWF 238

Query: 360 PTYFSEELSLNLTEAAWVSILPPLASVL 387
           PTY  +E  L++ EA +++ LP +   +
Sbjct: 239 PTYLVQERGLSILEAGFMASLPGIVGFI 266

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score =  127 bits (320), Expect = 1e-32
 Identities = 92/356 (25%), Positives = 147/356 (41%), Gaps = 60/356 (16%)

Query: 116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI 175
           +    L F +  +D+  LS A+  ++   G ++S AGL+ S+F  GYAL  L  G+L+  
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 176 FGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE 235
           FG R+VL  G+L+++L + LL   +     L++ R L+G+G G    AA  LIA   P +
Sbjct: 61  FGRRRVLLLGLLLFALGSLLLAFASSL-WLLLVGRFLLGLGGGALYPAAAALIAEWFPPK 119

Query: 236 ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETS 295
           ER RA+     G   G++ G LL   + E+LGW  +F I  +LG+               
Sbjct: 120 ERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLA------------ 167

Query: 296 NGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC 355
                                          +    + R   +  +  A F  S+G+Y  
Sbjct: 168 -------------------------------LLLLFLLR--LLLLLALAFFLLSFGYYGL 194

Query: 356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQT 415
           L++LP Y  E L L+  EA  +  L  L  +L   +    +D L          R++   
Sbjct: 195 LTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGR--------RRLLLL 246

Query: 416 IAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASI 471
           I  L  A+ +      L L     + +L   L L  F L   +     ++ E A  
Sbjct: 247 IGLLLAALGL------LLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPP 296

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score =  121 bits (305), Expect = 9e-31
 Identities = 76/349 (21%), Positives = 124/349 (35%), Gaps = 25/349 (7%)

Query: 121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK 180
            AF+      +      + ++   G + +  GL+ ++F  GYAL+Q   G L+  FG R+
Sbjct: 4   AAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRR 63

Query: 181 VLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRA 240
           VL  G+L+++L   LL   +     L++ RVL G+G G    AA  LIA   P EER RA
Sbjct: 64  VLLIGLLLFALGLLLLLFASSL-WLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRA 122

Query: 241 VSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATL 300
           +  +  G   G+  G LL   +    GW + F I  +L +       +L           
Sbjct: 123 LGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALL----------- 171

Query: 301 APRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLP 360
                                     VP   +     V  ++ A     +  +  L++LP
Sbjct: 172 -----LPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLP 226

Query: 361 TYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLS 420
            Y  E L L+   A  +  L  L   +   +  + +D L   G    ++      +  L 
Sbjct: 227 LY-QEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRL---GRRRRLLL----ALLLLI 278

Query: 421 PAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYA 469
            A              W +V +L  G        +           E  
Sbjct: 279 LAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEER 327

Length = 346

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 87.8 bits (218), Expect = 8e-19
 Identities = 90/370 (24%), Positives = 137/370 (37%), Gaps = 29/370 (7%)

Query: 107 KNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSH---RFGWNSSVAGLVQSSFFWGYA 163
           K    RY+      L+F+I  MD  +L+            +G +    G + S+   G A
Sbjct: 8   KQPLSRYQWR-AIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMA 66

Query: 164 LSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSA 223
              L  G LA   G R+VL   +L++S+ T L   LA  +  L++ R L G+G G     
Sbjct: 67  FGALFFGPLADRIGRRRVLLWSILLFSVFTLLC-ALATNVTQLLILRFLAGLGLGGLMPN 125

Query: 224 ATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGI--A 281
              L++   P   R  AV  +F G   G+  G  LA  +I   GW S+FY+ G+  +   
Sbjct: 126 LNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLL 185

Query: 282 WFSGF------KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIF-- 333
                        L         T+    N I  +    A      +       +++F  
Sbjct: 186 LLLMRFLPESIDFLVS---KRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKA 242

Query: 334 -----RSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLV 388
                 ++    +   +F    G Y   +WLP     EL  +L+ AA    L     V+ 
Sbjct: 243 LFQGKTARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIG 301

Query: 389 TSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLA 448
           + I    AD L   G   T +  +    A  +  V  TL S  L L    I G    G  
Sbjct: 302 SIIFGWLADRL---GPRVTAL--LLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQ 356

Query: 449 LSSFALSGLY 458
              +AL  L+
Sbjct: 357 SGLYALMALF 366

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 82.0 bits (203), Expect = 6e-17
 Identities = 62/288 (21%), Positives = 114/288 (39%), Gaps = 19/288 (6%)

Query: 121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK 180
           + +    + + N ++A+  +    G + +  GL+ SSF   Y +S+   G ++     R 
Sbjct: 2   IGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRV 61

Query: 181 VLQTGVLIWSLATALLPLLAGFMPGL---VLSRVLVGIGEGVSPSAATDLIARSIPLEER 237
            L  G+++ ++      L  GF   L        L GI +G+        + +     ER
Sbjct: 62  FLPIGLILCAIVN----LFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSER 117

Query: 238 SRAVSFVFGGLSFGSVAGLLLAPPII-----ENLGWESVFYIFGLLGIAW-FSGFKILQE 291
              VSF     +     G  L PP++     E   W  VF + G++ I      F +L++
Sbjct: 118 GTWVSF----WNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRD 173

Query: 292 GETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWG 351
              S G  L P     N +    A  +E   + K +  + +  +K +W +   +      
Sbjct: 174 SPQSCG--LPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVV 231

Query: 352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL 399
               L W P Y ++E   +  +A+W   L  L  ++ T +A   +D L
Sbjct: 232 RTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKL 279

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 69.2 bits (170), Expect = 4e-14
 Identities = 45/139 (32%), Positives = 67/139 (48%), Gaps = 6/139 (4%)

Query: 158 FFWGYALSQL----PGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLV 213
              GYAL QL      G L   FG + VL  G+ I+ L+TA+   L+  +  L+++R L 
Sbjct: 3   LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMF-ALSSNITVLIIARFLQ 61

Query: 214 GIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY 273
           G G   +  A   LIA   P EER  A+  +  G++ G + G  L   + + LGW + F 
Sbjct: 62  GFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFL 121

Query: 274 IFGLLGIAWF-SGFKILQE 291
              +L +A F     +L E
Sbjct: 122 FLAILALAAFILLAFLLPE 140

Length = 141

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 42/144 (29%), Positives = 65/144 (45%)

Query: 140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL 199
           +    G +++ AGL+ S F  G  L  L GG L+   G R++L    L+ +    LL  L
Sbjct: 202 LQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLAL 261

Query: 200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA 259
           A  +  L+++ +L+G G G +  A   L +   P E R  A        S G   G LLA
Sbjct: 262 APSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLA 321

Query: 260 PPIIENLGWESVFYIFGLLGIAWF 283
             +++  G+  VF I   L +   
Sbjct: 322 GLLLDTGGYGGVFLILAALALLAA 345

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 65.7 bits (161), Expect = 1e-11
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 1/143 (0%)

Query: 139 PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL 198
           P++   G +   AG + +++  G AL       L      R++L   + ++ ++  L  L
Sbjct: 38  PIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSAL 97

Query: 199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLL 258
              F   L+L+R L G+  GV  S A  L AR +P  +R RA++ VF GL+  +V G+ L
Sbjct: 98  APSFAV-LLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPL 156

Query: 259 APPIIENLGWESVFYIFGLLGIA 281
              + +  GW + F    +L + 
Sbjct: 157 GTFLGQLFGWRATFLAIAVLALL 179

Length = 394

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 63.8 bits (156), Expect = 5e-11
 Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 24/173 (13%)

Query: 118 TTSLAFVICNMDKVNLS---VAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK 174
           T  L F++  ++ ++L    VA   M+  FG + +  G   S+   G     L GG LA 
Sbjct: 16  TIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLAD 75

Query: 175 IFGGRKVLQTGVL---IWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIA-- 229
             G +++L   V    ++SLATA     A   P L+++R+L G+G G    A  +LIA  
Sbjct: 76  RIGRKRILIVSVALFGLFSLATAQ----AWDFPSLLVARLLTGVGLG---GALPNLIALT 128

Query: 230 -RSIPLEERSRAVSFVFGGLSFG----SVAGLLLAPPIIENLGWESVFYIFGL 277
             ++    R  AVS ++ G+ FG    SV G+L A     +  W  +FY+ G+
Sbjct: 129 SEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA----GDAAWRHIFYVGGV 177

Length = 406

>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 68/280 (24%), Positives = 112/280 (40%), Gaps = 23/280 (8%)

Query: 132 NLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191
           N ++A+  +    G + +  G++ S+F   Y +S+   G L+     R  +  G+++   
Sbjct: 47  NFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLIL--- 103

Query: 192 ATALLPLLAGFMPGLVLSRVLVGI-----GEGVSPSAATDLIARSIPLEERSRAVSFV-- 244
            +A++ +L GF P L L  VL  +     G G  P A T  I      +ER    S    
Sbjct: 104 -SAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCART--ITHWFSRKERGTWWSIWNT 160

Query: 245 ---FGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW-FSGFKILQEGETSNGATL 300
               GG     VA L        + GW + FY  G++ I        +L++   S G  L
Sbjct: 161 SHNIGGALAPLVALLAF---FAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEG--L 215

Query: 301 APRSNYIN-MKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWL 359
            P   Y     +      E  G +   +  K + ++K +W +  A+       Y    W 
Sbjct: 216 PPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWG 275

Query: 360 PTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL 399
           P Y SE    +L +A W   L  +A +  T +A   +D L
Sbjct: 276 PLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKL 315

Length = 448

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 8/181 (4%)

Query: 115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK 174
           L     L   +  +D   ++VAI  ++   G + S    V +S+    A+S    GWLAK
Sbjct: 3   LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAK 62

Query: 175 IFGGRKVLQTGVLIWSLATALLPLLAGFMPG---LVLSRVLVGIGEGVSPSAATDLIARS 231
            FG R++       ++L +    LL G  P    +++ RV+ G G G     +   +   
Sbjct: 63  RFGTRRLFLISTFAFTLGS----LLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNI 118

Query: 232 IPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWF-SGFKILQ 290
            P E+R RA++     +      G  L   IIEN  W  +F I   +GI      F IL 
Sbjct: 119 YPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILP 178

Query: 291 E 291
            
Sbjct: 179 R 179

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 2/125 (1%)

Query: 133 LSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA 192
           L   +       G ++ +AGL+        A+ +L  G L+   G R+ L   +L+  LA
Sbjct: 221 LLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILA 280

Query: 193 TALLPLLAGF--MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF 250
              L LL+       L+++ +L+G G G+   A   L++   P EER  A        S 
Sbjct: 281 ALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSL 340

Query: 251 GSVAG 255
           G   G
Sbjct: 341 GGALG 345

Length = 346

>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 51/210 (24%), Positives = 83/210 (39%), Gaps = 38/210 (18%)

Query: 151 AGLVQ---SSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV 207
           A +VQ   + +  G+A  QL  G L+  +G R VL  G+ I++L+ +L   L+  +  L+
Sbjct: 39  ASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALS-SLGLALSNNIETLL 97

Query: 208 LSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL 266
           + R +   G   + S  +  + R I P EE SR  S +   L+       LL   I+  L
Sbjct: 98  VLRFVQAFG-ASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL 156

Query: 267 GWESVFYIFGLLGIA-----WFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG 321
            W ++F    L GI      +F                + P +     +  +S   E   
Sbjct: 157 SWHAIFAFLSLAGILLSALIFF----------------ILPETLPYEARIQISTYFETFL 200

Query: 322 ESLKDVPWKAIFRSKAVW--AMIYAHFCGS 349
                     + +SK  W  A+IY    G 
Sbjct: 201 ---------LLLKSKMFWGYALIYGASFGG 221

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385

>gnl|CDD|235151 PRK03699, PRK03699, putative transporter; Provisional

 Score = 49.9 bits (120), Expect = 1e-06
 Identities = 44/221 (19%), Positives = 78/221 (35%), Gaps = 52/221 (23%)

Query: 169 GGWLAKIFGGRKVLQTG---VLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAAT 225
             WL +I   ++ L  G   +++          LA F     ++  ++G+  G++ S  T
Sbjct: 62  NAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFS----IAMFVLGVVSGITMSIGT 117

Query: 226 DLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII------ENLGWESVFYIFGLLG 279
            LI      E + R    +F   SF S+AG++   PII       ++ W  V+   GL+ 
Sbjct: 118 FLITHV--YEGKQRGSRLLFTD-SFFSMAGMIF--PIIAAYLLARSIEWYWVYACIGLVY 172

Query: 280 -----IAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFR 334
                +  FS F  L +                        + E+ G             
Sbjct: 173 VAIFILTLFSEFPALGKHAPKADK---------------PVAKEKWGIG----------- 206

Query: 335 SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAA 375
              V  +  A         T +SW+P Y  ++  ++L +A 
Sbjct: 207 ---VLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAG 244

Length = 394

>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator)

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 52/279 (18%), Positives = 88/279 (31%), Gaps = 25/279 (8%)

Query: 163 ALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPS 222
           A+ ++  G+L   FG R      +L+ ++      L       L+L R+ +GI  G S +
Sbjct: 51  AVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIA-GGSFA 109

Query: 223 AATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL------------GWES 270
           +    I+   P + +  A+    G  + G      + PPII +L            GW  
Sbjct: 110 SCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAF 169

Query: 271 VFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWK 330
           V       GI       I        GA   P            A       +L D    
Sbjct: 170 V---IVPAGILLLPALLIF-----FVGADTPPGKPATGKLSFKGARWSVGTGALGDQ--L 219

Query: 331 AIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEA-AWVSILPPLASVLVT 389
            +FR +  W +   +           S    +F ++  L+   A A+ S+   L   L  
Sbjct: 220 KVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLG-GLLGSLAR 278

Query: 390 SIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLS 428
            +    +D L            +      +   +   LS
Sbjct: 279 PLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLS 317

[Transport and binding proteins, Anions]. Length = 366

>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism]

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 50/235 (21%), Positives = 89/235 (37%), Gaps = 19/235 (8%)

Query: 151 AGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL---PLLAGFMPGLV 207
           A L+Q +FF GY +  LP G L K  G +  +  G+L++++  AL         +   LV
Sbjct: 50  ASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLV 109

Query: 208 LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFV-----FGGLSFGSVAGLLLAPPI 262
              +L   G G+  +AA   +      E  +  ++        G +    +   L+   +
Sbjct: 110 ALFIL-ASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGV 168

Query: 263 IENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKK--SLSASLEEM 320
              +    +  I G    +    + IL          L   +  I + K   L  +   +
Sbjct: 169 ALTMSAAQILAIKGADASSVQFPYLIL-------AGLLVLLAVLILLSKLPDLQVAAPSL 221

Query: 321 GESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAA 375
           G S       ++F++K +   + A F          S+L +Y  E L LN  +AA
Sbjct: 222 GASGSAGL-SSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAA 275

Length = 422

>gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease

 Score = 48.1 bits (114), Expect = 5e-06
 Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 12/181 (6%)

Query: 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLA 173
           +LI    + F+   +D++N+  A + M    G ++++ GL  + F+  Y +  +P   + 
Sbjct: 8   RLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIML 67

Query: 174 KIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIP 233
            I G R+ +   +++W +A+    + A     L L R+LVGI E          +    P
Sbjct: 68  AIIGARRWIAGIMVLWGIAST-ATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFP 126

Query: 234 LEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-----NL-GWESVFYIFG----LLGI-AW 282
              R+RA +     +      GL+L+  I+       L GW+ +F + G    +LG+  W
Sbjct: 127 AYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTW 186

Query: 283 F 283
           F
Sbjct: 187 F 187

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PMID:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. Length = 412

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 48.0 bits (114), Expect = 6e-06
 Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 2/109 (1%)

Query: 170 GWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIA 229
           G LA  FG + ++   ++ +S+ T L  L +G +  L LSR +VG+G     + A+    
Sbjct: 74  GLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIM-LTLSRFIVGMGMAGEYACASTYAV 132

Query: 230 RSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLL 278
            S P   +S+A +F+  G   G++      P   E  GW + F++ GLL
Sbjct: 133 ESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV-GLL 180

Length = 426

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 5/113 (4%)

Query: 148 SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV 207
           + ++GL+ S F  G  +  L  G L   FG +K L  G +++ +   L     G    ++
Sbjct: 45  TVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYML 104

Query: 208 -LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA 259
            + RV+VG+G G         I+   P + R    S        G   G+L+A
Sbjct: 105 IVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSL----YQLGITFGILVA 153

Length = 449

>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 59/322 (18%), Positives = 114/322 (35%), Gaps = 11/322 (3%)

Query: 115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK 174
           L    +   +  ++  ++ ++ ++  +        + GL+ S+FF GYA+  L  G L  
Sbjct: 5   LALALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGD 64

Query: 175 IFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLSRVLVGIGEGVSPSAATDLIARSIP 233
            +G RKVL  G+L++ L T LL L     +  L++ R+L G+G G     A+ L++   P
Sbjct: 65  RYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFP 124

Query: 234 LE-ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEG 292
              ER  AV  V  G     +A   L   ++           F L  +       ++   
Sbjct: 125 EATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLLLILVLLL 184

Query: 293 ETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRS---------KAVWAMIY 343
           +    A   P +  + + +     L  +   L  +    +              +  +  
Sbjct: 185 DLLLAAPRLPLAVGLALIELGKLLLLLLILLLGGLVLLLLGLYLSAAGFGLRALLLGLGL 244

Query: 344 AHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG 403
           A      G    L  LP        L+    A   +L  +   L   +      +L+   
Sbjct: 245 ALLALFVGALILLVLLPILLGAAGGLSALVGAAGGLLALILLGLAGLLGTLVGGSLLVDR 304

Query: 404 VETTMVRKICQTIAFLSPAVCM 425
           +  ++  +       L  A+ +
Sbjct: 305 LGRSLGLRAILLAGALLLAILL 326

Length = 338

>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 70/343 (20%), Positives = 126/343 (36%), Gaps = 35/343 (10%)

Query: 119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGG 178
           ++LAF +  M     S   + +   FG +    GL+ +      AL +LP G+L   FGG
Sbjct: 19  STLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGG 78

Query: 179 RKVLQTGVLIWSLATALLPLLAGFMPG---LVLSRVLVGIGEGVSPSAATDLIARSIPLE 235
           RK     +L+  +    L   A   P    L++  +L+G+  G S +      +   P +
Sbjct: 79  RKWTILSMLLLLIPCLGL-AFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFP-K 135

Query: 236 ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETS 295
           E+      + G  + G     L+AP +    G+ +   + G+  +A      +   G   
Sbjct: 136 EKQGLALGIAGAGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND 195

Query: 296 NGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC 355
                A                            KA+F +K  W +   +F  ++G +  
Sbjct: 196 VPEHRASVK------------------PQLPAQLKAVFSNKDTWLLSLLYF-ATFGGFVG 236

Query: 356 LS-WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQ 414
            S +LP Y   +  L+   A  ++ L PL   L   +    +D +   G   T+      
Sbjct: 237 FSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI--GGRRVTLAV---- 290

Query: 415 TIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGL 457
              F+  A+   L S+ L         ++   + L+ F  +GL
Sbjct: 291 ---FVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGL 330

Length = 417

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 31/150 (20%), Positives = 64/150 (42%), Gaps = 10/150 (6%)

Query: 152 GLVQSSFFWGYALSQLPGGWLA-KIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLS 209
           GL  +     Y L+ + GGWLA ++ G R+ +  G ++ ++   +L + +     GL + 
Sbjct: 65  GLFSAYGSLVY-LTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIG 123

Query: 210 RVLVGIGEGVSPSAATDLIARSIPLEE--RSRAVSFVFGGLSFGSVAGLLLAPPIIENLG 267
             L+ +G G+     + L+    P ++  R    +  + G++ GS+   ++   +  N G
Sbjct: 124 LALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYG 183

Query: 268 WESVFYIFGL-----LGIAWFSGFKILQEG 292
           W   F +  +     L I       +   G
Sbjct: 184 WHVGFGLAAVGMIIGLVIFLLGRRHVKGIG 213

Length = 498

>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 2/140 (1%)

Query: 139 PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL 198
           P+   FG   +   +  +    G A+S   GG LA  FG R V   G +++ L      +
Sbjct: 28  PLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAI 87

Query: 199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLL 258
               +  L L+  L   G G++   A +   +  P ++R  A   + GG   GS     L
Sbjct: 88  ADS-LAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPL 145

Query: 259 APPIIENLGWESVFYIFGLL 278
              +I   G  + F   G++
Sbjct: 146 ITSVINLEGVPAAFIYMGII 165

This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 62/312 (19%), Positives = 104/312 (33%), Gaps = 42/312 (13%)

Query: 170 GWLAKIFGGRKVLQTGVLIWSLATALLPLLAG------FMPG-LVLSRVLVGIGEGVSPS 222
           G      G +K L   +L+  + T L+ LL        + P  L+L+R++ G   G    
Sbjct: 56  GHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWG 115

Query: 223 AATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFG---LLG 279
            A   +A   P  +R    SF       G+  GLLLA      L    + Y+ G   LL 
Sbjct: 116 GAALYLAEYAPPGKRGFYGSFQQ----VGAPVGLLLA-----ALTVLLLSYLLGDDALLE 166

Query: 280 IAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLK--DVPWKAIFRS-- 335
             W   F +         A L     Y+      +   E+  E  K    P         
Sbjct: 167 WGWRIPFLV--------SAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGPIAETLTKHR 218

Query: 336 KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQF 395
           K     +      +   Y   ++LPTY ++ L L+   A  V +L  +   +   ++   
Sbjct: 219 KPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGAL 278

Query: 396 ADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALS 455
           +D +   G    +   I  T+     AV + ++ +D G        +    +   +    
Sbjct: 279 SDRI---GRRPVL---IIFTVLAALLAVPLLMALLDSG-----SFTLFFFLVLGMALIGG 327

Query: 456 GLYCTHQDISPE 467
                     PE
Sbjct: 328 MYTGPMGSFLPE 339

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 25/143 (17%), Positives = 55/143 (38%), Gaps = 14/143 (9%)

Query: 145 GWNSSVAGLVQSSFFWGYALSQLPGGWLA-KIFGGRKVLQTG---VLIWSLATALLPLLA 200
           G++   A ++  ++     L    G W   +++G +K +  G   +++     A+     
Sbjct: 44  GFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPD 103

Query: 201 GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSR---AVSFVFGGLSFGSVAGLL 257
               GL      + +G G+  +  + ++ +     +  R     +  +  ++ GS    L
Sbjct: 104 LIFYGLGT----IAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPL 159

Query: 258 LAPPIIENLGWESVFYIFGLLGI 280
           LA  I EN G+      F L  +
Sbjct: 160 LAGVIAENYGYH---VGFNLAAV 179

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 32/128 (25%), Positives = 52/128 (40%)

Query: 140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL 199
            S   G  S+  G V ++F  G  L  L  G L + F    ++   + +  LA  ++ L 
Sbjct: 238 QSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT 297

Query: 200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA 259
               P  ++    +G+G G        L+ R +P E   R     F         GL+LA
Sbjct: 298 PPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILA 357

Query: 260 PPIIENLG 267
            P+ ++LG
Sbjct: 358 GPLADHLG 365

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 365

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 6/124 (4%)

Query: 138 IPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP 197
              ++   ++SS+ GLV S F  G  +  L  GWL+  FG +K L    L++ +   L+ 
Sbjct: 60  FTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMG 119

Query: 198 LLAGFMPGLVL--SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAG 255
           L A  +   +L   RVL+GIG G++ +     ++   P   R    S            G
Sbjct: 120 LAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLY----QLAITFG 175

Query: 256 LLLA 259
           +L+A
Sbjct: 176 ILVA 179

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 10/110 (9%)

Query: 176 FGGRKVLQTGVLIWSLATALLPLLAGFMPG---LVLSRVLVGIG-EGVSPSAATDLIARS 231
           +G R  +   ++++S+ T    L  GF PG   L ++R+++G+G  G   S+AT +I  S
Sbjct: 82  YGRRLAMVISIVLFSVGT----LACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVI-ES 136

Query: 232 IPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIA 281
            P   R++A  F+  G S G+V    +   ++   GW ++F+I G+L I 
Sbjct: 137 WPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFI-GILPII 185

Length = 496

>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system; Provisional

 Score = 41.1 bits (97), Expect = 9e-04
 Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 16/139 (11%)

Query: 151 AGLVQ---SSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV 207
           AG VQ   S++  G+A+ QL  G +A  FG + V+  G L+++LA     L    +  L+
Sbjct: 25  AGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQT-IDQLI 83

Query: 208 LSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN- 265
             R L G+    + S   + + R + P EE SR +SFV   L   ++A LL   PII   
Sbjct: 84  YMRFLHGLA-AAAASVVINALMRDMFPKEEFSRMMSFVT--LVM-TIAPLL--APIIGGW 137

Query: 266 ----LGWESVFYIFGLLGI 280
                 W ++F++  L  I
Sbjct: 138 LLVWFSWHAIFWVLALAAI 156

Length = 377

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 9/117 (7%)

Query: 147 NSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGL 206
           ++    L QS FF G  L     G+L+  FG +KVL    L+ +L TA+  +L  F P  
Sbjct: 125 DAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVL----LLSTLVTAVSGVLTAFSPNY 180

Query: 207 ---VLSRVLVGIGE-GVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA 259
              ++ R+LVG+G  G+   A   L    +P ++R+   + +    S G V   L+A
Sbjct: 181 TVFLVFRLLVGMGIGGIWVQAVV-LNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVA 236

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 2/140 (1%)

Query: 139 PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL 198
           P+    GW  +   +  + F           GW    +G R V+  G ++  L   L   
Sbjct: 28  PIDATHGWGRAAIQVAFTLFVVTETWLVPIEGWFVDKYGPRIVVMFGGIMCGLGWVLNAY 87

Query: 199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLL 258
            A  +P L  + V+ GIG G           +  P ++R  A      G   G+   ++ 
Sbjct: 88  -ADSLPALYAAAVVAGIGAGAVYGTCVGNALKWFP-DKRGLAAGLTAAGFGAGAALTVVP 145

Query: 259 APPIIENLGWESVFYIFGLL 278
              +I+  G+++ F  FGL 
Sbjct: 146 IAAMIKVSGYQAAFMYFGLG 165

This model represents a subgroup of the more broadly defined model TIGR00890, which in turn belongs to the Major Facilitator transporter family. Seed members for this family include the known oxalate/formate antiporter of Oxalobacter formigenes, as well as transporter subunits co-clustered with the two genes of a system that decarboxylates oxalate into formate. In many of these cassettes, two subunits are found rather than one, suggesting the antiporter is sometimes homodimeric, sometimes heterodimeric. Length = 405

>gnl|CDD|179614 PRK03633, PRK03633, putative MFS family transporter protein; Provisional

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 151 AGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSR 210
            G+V SS+F G  +  L  G++ K  G  +      LI++   A L L+ GF    +  R
Sbjct: 43  VGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGF-WSWLAWR 101

Query: 211 VLVGIG 216
            + GIG
Sbjct: 102 FVAGIG 107

Length = 381

>gnl|CDD|129795 TIGR00712, glpT, glycerol-3-phosphate transporter

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 65/312 (20%), Positives = 114/312 (36%), Gaps = 29/312 (9%)

Query: 138 IPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP 197
           +P     G++    G   S+    Y  S+   G ++     R  L  G+++    +A + 
Sbjct: 50  MPYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL----SAAVM 105

Query: 198 LLAGFMP----GLVLSRVLVGI-----GEGVSPSAATDLIARSIPLEERSRAVSFVFGGL 248
           LL GF+P     + +  VL+ +     G G  P   T  +       ER   VS      
Sbjct: 106 LLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRT--MVHWWSQSERGTIVSIWNCAH 163

Query: 249 SFGS-VAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYI 307
           + G  +  LL+   +     W +  Y   +  I   + F      +T     L P   Y 
Sbjct: 164 NIGGGIPPLLVLLGMAWFNDWHAALYFPAICAII-VALFAFAMMRDTPQSCGLPPIEEYR 222

Query: 308 NMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEEL 367
           N          E   + K++  + +  +K +W +  A+       Y  L W PTY  E  
Sbjct: 223 NDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVK 282

Query: 368 SLNLTEAAWVSILPPLASVLVTSIAAQFADNLI-----ATGVETTMVRKICQTIAFLSPA 422
              L +++W   L   A +  T +    +D +      ATGV    +  I   + +++PA
Sbjct: 283 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPA 342

Query: 423 -------VCMTL 427
                  +CM +
Sbjct: 343 GNPLVDMICMIV 354

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar [Transport and binding proteins, Other]. Length = 438

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 35/163 (21%), Positives = 78/163 (47%), Gaps = 17/163 (10%)

Query: 121 LAFVICNMDKVNLSVAIIPMSHRFGWNSS-VAGLVQSSFFWGYALSQLPGGWLAKIFGGR 179
           L +++   D   +++ +  ++  FG  +   A L+ ++    +  + + G W  +   GR
Sbjct: 19  LGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY--GR 76

Query: 180 KV-LQTGVLIWSLATALLPLLAGFMPG---LVLSRVLVGIGEGVSPSAATDLIARSIPLE 235
           ++ + T ++++S  T    L  GF PG   + ++R+++GIG G    ++   +  S P  
Sbjct: 77  RLPMVTSIVLFSAGT----LACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKH 132

Query: 236 ERSRAVSFVFGGLSFG----SVAGLLLAPPIIENLGWESVFYI 274
            R++A   +  G + G    +    L+ P  +   GW ++F+I
Sbjct: 133 LRNKASGLLISGYAVGAVVAAQVYSLVVP--VWGDGWRALFFI 173

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	477
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
KOG2532	466	consensus Permease of the major facilitator superf	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.98
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.98
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.98
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.97
PLN00028	476	nitrate transmembrane transporter; Provisional	99.97
TIGR00900	365	2A0121 H+ Antiporter protein.	99.97
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.97
TIGR00891	405	2A0112 putative sialic acid transporter.	99.97
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.97
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.97
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.97
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.97
PRK12307	426	putative sialic acid transporter; Provisional	99.97
PRK03699	394	putative transporter; Provisional	99.97
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.97
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.97
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.97
PRK09705	393	cynX putative cyanate transporter; Provisional	99.97
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.97
PRK10642	490	proline/glycine betaine transporter; Provisional	99.97
PRK10504	471	putative transporter; Provisional	99.97
PRK10091	382	MFS transport protein AraJ; Provisional	99.97
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.97
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.97
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.97
PRK10133	438	L-fucose transporter; Provisional	99.97
PRK15075	434	citrate-proton symporter; Provisional	99.97
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.97
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.97
PRK11043	401	putative transporter; Provisional	99.96
TIGR00895	398	2A0115 benzoate transport.	99.96
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.96
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.96
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.96
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.96
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.96
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.96
PRK10489	417	enterobactin exporter EntS; Provisional	99.96
PRK03893	496	putative sialic acid transporter; Provisional	99.96
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.96
PRK05122	399	major facilitator superfamily transporter; Provisi	99.96
PRK09952	438	shikimate transporter; Provisional	99.96
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.96
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.96
PRK12382	392	putative transporter; Provisional	99.96
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.96
PRK03633	381	putative MFS family transporter protein; Provision	99.96
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.96
KOG2533	495	consensus Permease of the major facilitator superf	99.96
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.95
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.95
PRK09874	408	drug efflux system protein MdtG; Provisional	99.95
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.95
TIGR00901	356	2A0125 AmpG-related permease.	99.95
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.95
PRK10054	395	putative transporter; Provisional	99.95
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.95
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.95
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.94
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.94
TIGR00805	633	oat sodium-independent organic anion transporter.	99.94
PRK15011	393	sugar efflux transporter B; Provisional	99.94
TIGR00898	505	2A0119 cation transport protein.	99.94
PRK11010	491	ampG muropeptide transporter; Validated	99.94
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.94
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.93
PRK11902	402	ampG muropeptide transporter; Reviewed	99.93
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.92
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.92
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.92
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.92
PRK09528	420	lacY galactoside permease; Reviewed	99.92
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.92
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.92
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.91
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.91
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.9
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.9
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.89
KOG2615	451	consensus Permease of the major facilitator superf	99.89
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.88
KOG0569	485	consensus Permease of the major facilitator superf	99.88
KOG0254	513	consensus Predicted transporter (major facilitator	99.88
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.86
PTZ00207	591	hypothetical protein; Provisional	99.85
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.84
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.84
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.83
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.82
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.82
PRK09669	444	putative symporter YagG; Provisional	99.82
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.81
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.81
PF13347	428	MFS_2: MFS/sugar transport protein	99.81
PRK10429	473	melibiose:sodium symporter; Provisional	99.8
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.79
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.79
PRK09848	448	glucuronide transporter; Provisional	99.78
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.77
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.77
KOG2563	480	consensus Permease of the major facilitator superf	99.77
PRK11462	460	putative transporter; Provisional	99.75
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.74
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.73
KOG3626	735	consensus Organic anion transporter [Secondary met	99.73
COG2211	467	MelB Na+/melibiose symporter and related transport	99.7
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.68
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.68
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.63
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.63
PRK15011	393	sugar efflux transporter B; Provisional	99.58
PRK05122	399	major facilitator superfamily transporter; Provisi	99.57
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.56
PRK10642	490	proline/glycine betaine transporter; Provisional	99.56
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.56
PRK03545	390	putative arabinose transporter; Provisional	99.56
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.55
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.55
PRK09528	420	lacY galactoside permease; Reviewed	99.54
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.54
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.54
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.54
PRK09874	408	drug efflux system protein MdtG; Provisional	99.54
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.54
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.53
TIGR00893	399	2A0114 d-galactonate transporter.	99.52
PRK10489	417	enterobactin exporter EntS; Provisional	99.52
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.51
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.51
PRK12382	392	putative transporter; Provisional	99.51
PRK03633	381	putative MFS family transporter protein; Provision	99.5
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.5
PRK03699	394	putative transporter; Provisional	99.5
PRK09705	393	cynX putative cyanate transporter; Provisional	99.49
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.48
PRK11663	434	regulatory protein UhpC; Provisional	99.48
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.48
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.46
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.46
PRK03893	496	putative sialic acid transporter; Provisional	99.46
PRK11010	491	ampG muropeptide transporter; Validated	99.46
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.46
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.44
PRK09952	438	shikimate transporter; Provisional	99.43
TIGR00891	405	2A0112 putative sialic acid transporter.	99.43
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.43
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.43
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.41
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.41
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.4
KOG0569	485	consensus Permease of the major facilitator superf	99.39
TIGR00900	365	2A0121 H+ Antiporter protein.	99.38
PRK10504	471	putative transporter; Provisional	99.38
PRK15075	434	citrate-proton symporter; Provisional	99.36
PRK11902	402	ampG muropeptide transporter; Reviewed	99.36
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.35
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.35
PRK12307	426	putative sialic acid transporter; Provisional	99.34
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.34
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.34
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.34
PRK10091	382	MFS transport protein AraJ; Provisional	99.34
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.34
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.34
TIGR00895	398	2A0115 benzoate transport.	99.33
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.33
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	99.33
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.32
PLN00028	476	nitrate transmembrane transporter; Provisional	99.32
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.32
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.31
TIGR00898	505	2A0119 cation transport protein.	99.31
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.3
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.28
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.27
PRK10054	395	putative transporter; Provisional	99.27
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.26
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.25
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.25
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.2
PRK10133	438	L-fucose transporter; Provisional	99.2
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.19
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.19
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.17
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.17
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.16
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.16
PF13347	428	MFS_2: MFS/sugar transport protein	99.14
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.13
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.12
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.11
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.11
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.09
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	99.09
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.09
PRK09848	448	glucuronide transporter; Provisional	99.09
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.08
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.07
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.07
PRK10429	473	melibiose:sodium symporter; Provisional	99.07
TIGR00901	356	2A0125 AmpG-related permease.	99.07
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.07
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	99.05
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.05
PRK11043	401	putative transporter; Provisional	99.02
KOG3098	461	consensus Uncharacterized conserved protein [Funct	99.02
PRK09669	444	putative symporter YagG; Provisional	99.0
KOG3762	618	consensus Predicted transporter [General function	98.98
KOG0637	498	consensus Sucrose transporter and related proteins	98.95
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.93
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.91
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.9
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.9
KOG2532	466	consensus Permease of the major facilitator superf	98.88
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.87
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.85
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.83
PRK11462	460	putative transporter; Provisional	98.81
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.8
COG2211	467	MelB Na+/melibiose symporter and related transport	98.8
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.77
COG0477	338	ProP Permeases of the major facilitator superfamil	98.77
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.75
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.75
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.7
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.68
KOG3810	433	consensus Micronutrient transporters (folate trans	98.66
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.64
KOG0254	513	consensus Predicted transporter (major facilitator	98.61
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.6
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.53
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.51
KOG2533	495	consensus Permease of the major facilitator superf	98.48
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.36
PF12832	77	MFS_1_like: MFS_1 like family	98.33
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.32
KOG2615	451	consensus Permease of the major facilitator superf	98.28
PTZ00207	591	hypothetical protein; Provisional	98.28
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.27
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.23
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.22
KOG3762	618	consensus Predicted transporter [General function	98.17
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	98.16
COG3202	509	ATP/ADP translocase [Energy production and convers	98.14
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.08
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.02
PF12832	77	MFS_1_like: MFS_1 like family	97.99
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.88
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.81
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.79
PRK03612	521	spermidine synthase; Provisional	97.63
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.56
KOG2563	480	consensus Permease of the major facilitator superf	97.53
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	97.52
KOG3880	409	consensus Predicted small molecule transporter inv	97.45
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	97.44
KOG3097	390	consensus Predicted membrane protein [Function unk	97.42
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	97.38
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.2
TIGR00805	633	oat sodium-independent organic anion transporter.	97.17
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.13
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.09
KOG1330	493	consensus Sugar transporter/spinster transmembrane	96.96
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	96.86
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	96.83
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.76
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.73
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.62
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	96.57
KOG3626	735	consensus Organic anion transporter [Secondary met	96.53
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	95.96
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.78
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	95.72
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	94.32
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	93.97
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	93.45
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	93.02
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	92.47
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	92.44
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	92.23
KOG3880	409	consensus Predicted small molecule transporter inv	91.94
KOG0637	498	consensus Sucrose transporter and related proteins	91.77
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	91.35
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	90.87
COG4262	508	Predicted spermidine synthase with an N-terminal m	90.33
COG0477	338	ProP Permeases of the major facilitator superfamil	89.7
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	89.64
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	87.76
KOG3810	433	consensus Micronutrient transporters (folate trans	87.3
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	84.37
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	82.08
PRK03612	521	spermidine synthase; Provisional	81.74
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	81.34
PF06912	209	DUF1275: Protein of unknown function (DUF1275); In	80.2

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.3e-35  Score=268.79  Aligned_cols=356  Identities=16%  Similarity=0.175  Sum_probs=281.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHH
Q 011781          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (477)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (477)
                      +++++..+++++...++.+-.++...|.+.++.++|.+|+|++.+.+.+++.++..+.|.++||.++|..+..++++.++
T Consensus        27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai  106 (448)
T COG2271          27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAI  106 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHH
Confidence            46688888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhh--HHhhcccChh
Q 011781          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA--PPIIENLGWE  269 (477)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~--~~l~~~~g~~  269 (477)
                      ..++++ ++++.+.+.++.++.|+..|..+|++...+.+|+++++||+..++++++.++|+.+.|++.  +++..+.+||
T Consensus       107 ~nil~G-fs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~  185 (448)
T COG2271         107 VNILFG-FSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWR  185 (448)
T ss_pred             HHHHHh-hhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchh
Confidence            999997 5668899999999999999999999999999999999999999999999999999999999  8998889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhc--cCCCCCCHHHHhhcHHHHHHHHHHHH
Q 011781          270 SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG--ESLKDVPWKAIFRSKAVWAMIYAHFC  347 (477)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~  347 (477)
                      ..|++.++++++..++.++..+++++...-++.++-..+..+..  ..++.+  ....+.-++.+++||.+|.+++..++
T Consensus       186 ~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~--~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vf  263 (448)
T COG2271         186 AAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIY--EEEKENEGLTAWQIFVKYVLKNKLIWLLALANVF  263 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhh--hhhccCCCccHHHHHHHHHHcChHHHHHHHHHHH
Confidence            99999999998887777776665554433222111110000000  000000  01111235678899999999999999


Q ss_pred             hHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhh
Q 011781          348 GSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTL  427 (477)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l  427 (477)
                      .+.+-+++..|.|.|+.|..|++...+++..+.+-.++++|.+++||++||+.+.+      |....++..+...+++..
T Consensus       264 vYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgr------R~p~~~i~~~~i~~~~~~  337 (448)
T COG2271         264 VYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGR------RGPMALIFMLLITASLVL  337 (448)
T ss_pred             HHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc------cchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999997541      344444444444444444


Q ss_pred             hcccCCCc-hHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhhc
Q 011781          428 SSIDLGLP-HWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYLE  476 (477)
Q Consensus       428 ~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl~  476 (477)
                      ........ ....+.++++|+...+-.........+-.+++..|++.|+.
T Consensus       338 ~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~  387 (448)
T COG2271         338 YWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFV  387 (448)
T ss_pred             HHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchh
Confidence            44433332 34455666677776655533333333334445599998863

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=6e-32  Score=251.92  Aligned_cols=329  Identities=20%  Similarity=0.269  Sum_probs=263.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHH
Q 011781          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (477)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (477)
                      +..+..+.++.|............+|++.+++|+|..+.|++.++|.++..++.++...+.||+.||++++..+.++.++
T Consensus        12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~   91 (394)
T COG2814          12 WLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVS   91 (394)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence            45667778888888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHH
Q 011781          193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF  272 (477)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~  272 (477)
                      .+++ .++++++.+++.|++.|+..|.+++...++..++.|+++|++++++...+..++.++|.+++.++.+.+|||+.|
T Consensus        92 n~l~-alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F  170 (394)
T COG2814          92 NLLS-ALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATF  170 (394)
T ss_pred             HHHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHH
Confidence            9888 588899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHH
Q 011781          273 YIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH  352 (477)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  352 (477)
                      ++.++++++..+..+...+ +++..+.....                      ..+..+++|+|.++...+..++...+.
T Consensus       171 ~~ia~l~ll~~~~~~~~lP-~~~~~~~~~~~----------------------~~~~~~~l~~p~v~~~l~~t~l~~~g~  227 (394)
T COG2814         171 LAIAVLALLALLLLWKLLP-PSEISGSLPGP----------------------LRTLLRLLRRPGVLLGLLATFLFMTGH  227 (394)
T ss_pred             HHHHHHHHHHHHHHHHhCC-CccCCCCCCcc----------------------hhHHHHHhcCchHHHHHHHHHHHHcch
Confidence            9999998887665544433 11111111010                      001258899999999999999999999


Q ss_pred             HHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcccC
Q 011781          353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDL  432 (477)
Q Consensus       353 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~  432 (477)
                      +...+|+.+++++..|++....++++..++++.++|..++|++.|| +.+        +.+.....+.....+.+... .
T Consensus       228 F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~--------~~l~~~~~l~a~~~l~l~~~-~  297 (394)
T COG2814         228 FALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPR--------RALIAALLLLALALLALTFT-G  297 (394)
T ss_pred             hhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cch--------hHHHHHHHHHHHHHHHHHHh-c
Confidence            9999999999999999999999999999999999999999999999 544        44444433433333333333 2


Q ss_pred             CCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhhc
Q 011781          433 GLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYLE  476 (477)
Q Consensus       433 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl~  476 (477)
                      .+........++.|+... ...........+..||.++.+.+++
T Consensus       298 ~~~~~~~~~~~~wg~a~~-~~~~~~~~~~a~~~p~~~~~a~sl~  340 (394)
T COG2814         298 ASPALALALLFLWGFAFS-PALQGLQTRLARLAPDAADLAGSLN  340 (394)
T ss_pred             chHHHHHHHHHHHHHHhh-hhhhHHHHHhcccCCCchHHHHHHH
Confidence            333333333333333332 2223333333445578888877764

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=2.9e-31  Score=266.26  Aligned_cols=353  Identities=17%  Similarity=0.121  Sum_probs=267.4

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHH
Q 011781          111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS  190 (477)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  190 (477)
                      ++|..+..+++..++..++.++++..+|.+.+++|.+..+.+|+.+.+.+++.++.+++|+++||+|||+++..+.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~   82 (495)
T PRK14995          3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFG   82 (495)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            35677888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhc-CCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChh
Q 011781          191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWE  269 (477)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~  269 (477)
                      ++.++++ .+++++.++++|+++|++.+...+.....+.+.+ |+++|++++|++.....+|..+||.+++++.++.|||
T Consensus        83 ~~~~~~~-~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr  161 (495)
T PRK14995         83 LASLAAA-FSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWG  161 (495)
T ss_pred             HHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChH
Confidence            9988875 6788899999999999999998888888887776 6789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH-hccCCcCCCCCCCCcchhhh-----------hh---hhh-hh-----------------h
Q 011781          270 SVFYIFGLLGIAWFSGFKI-LQEGETSNGATLAPRSNYIN-----------MK---KSL-SA-----------------S  316 (477)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----------~~---~~~-~~-----------------~  316 (477)
                      |.|++...+.++.+++..+ +++++. ++.++.+......           ..   +.. ..                 .
T Consensus       162 ~~f~i~~~~~~~~~~l~~~~l~~~~~-~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~  240 (495)
T PRK14995        162 SVFLINVPIVLVVMGLTARYVPRQAG-RRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFI  240 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCC-CCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHH
Confidence            9999988777665554444 343322 1111111111000           00   000 00                 0


Q ss_pred             HHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhch
Q 011781          317 LEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFA  396 (477)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~  396 (477)
                      ..+.+.+....+ .+++|+|.++...+..++......+...++|.|+++.+|+++.++|.......++..++.++.|++.
T Consensus       241 ~~e~~~~~p~~~-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~  319 (495)
T PRK14995        241 RTQLAASRPMID-MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILV  319 (495)
T ss_pred             HHHhcCCCCCcC-HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            011111111122 4678899988888888888888888888999999999999999999999999999999999999999


Q ss_pred             hHHHhcCcccceehhhhhHHhhhhhHHHHh-hhcccCCCch-HHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhh
Q 011781          397 DNLIATGVETTMVRKICQTIAFLSPAVCMT-LSSIDLGLPH-WEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLY  474 (477)
Q Consensus       397 dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~-l~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~g  474 (477)
                      ||+|+|        +.. ..+.+..++... +......... ......++.|.+.+....+.........+++++|.+.|
T Consensus       320 ~r~g~~--------~~~-~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~  390 (495)
T PRK14995        320 SRLGLR--------LVA-TGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGA  390 (495)
T ss_pred             HHcCch--------HHH-HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHH
Confidence            999866        332 233333332222 2122222223 34445666777777666666666777778888998877


Q ss_pred             h
Q 011781          475 L  475 (477)
Q Consensus       475 l  475 (477)
                      +
T Consensus       391 ~  391 (495)
T PRK14995        391 I  391 (495)
T ss_pred             H
Confidence            5

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=1.2e-32  Score=274.70  Aligned_cols=353  Identities=10%  Similarity=0.050  Sum_probs=251.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHH
Q 011781          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (477)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (477)
                      ++.+..+++.+++.+.+...++...|.+.+++|++..+.|++.+.+.+++.+++++.|+++||+|+|+++..+.++.+++
T Consensus        28 ~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~  107 (467)
T PRK09556         28 MQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAIC  107 (467)
T ss_pred             HHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHH
Confidence            45666777788888889999999999999999999999999999999999999999999999999999998888877776


Q ss_pred             HHHHHHh----hchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhccc--
Q 011781          193 TALLPLL----AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL--  266 (477)
Q Consensus       193 ~~~~~~~----~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~--  266 (477)
                      .++++..    +++++.+++.|++.|++.+...|...+++.+++|+++||+++|+...+..+|.++++.+..++.+..  
T Consensus       108 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~  187 (467)
T PRK09556        108 MLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFD  187 (467)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhcc
Confidence            6655432    5778899999999999999999999999999999999999999999999999999999988776653  


Q ss_pred             -ChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhh-ccCCCC-CC-HHHHhhcHHHHHHH
Q 011781          267 -GWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEM-GESLKD-VP-WKAIFRSKAVWAMI  342 (477)
Q Consensus       267 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~-~~~~~~~~~~~~~~  342 (477)
                       +|+..|.+.+++.++..++.+++.++++++....+.++ ...  +......+.. +++... .. .+..+++|.+|...
T Consensus       188 ~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  264 (467)
T PRK09556        188 GHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEE-IFG--EPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLC  264 (467)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhh-ccc--CccchhhhccccccCcHHHHHHHHHHcChHHHHHH
Confidence             69999988888777665555554333322211111100 000  0000000000 000000 00 12378999999999


Q ss_pred             HHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhH
Q 011781          343 YAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPA  422 (477)
Q Consensus       343 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~  422 (477)
                      +..++......+...|+|.|+++.+|++..++++......++.+++.+++|+++||+++|        +...........
T Consensus       265 ~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r--------~~~~~~~~~~~~  336 (467)
T PRK09556        265 FANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGR--------RALVACIALALI  336 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------chHHHHHHHHHH
Confidence            988888888888899999999988999999999999999999999999999999999877        222221111111


Q ss_pred             HHHhhhcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhhc
Q 011781          423 VCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYLE  476 (477)
Q Consensus       423 ~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl~  476 (477)
                      ...++......+.....+..+++|.+..+.............+++++|++.|+.
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~  390 (467)
T PRK09556        337 IFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIK  390 (467)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHH
Confidence            111111111222223334455555443333222223334556667799999864

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.3e-31  Score=260.55  Aligned_cols=331  Identities=36%  Similarity=0.628  Sum_probs=284.0

Q ss_pred             hhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhch-HHHHHHHHHHHHhhccch
Q 011781          142 HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLSRVLVGIGEGVS  220 (477)
Q Consensus       142 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~~~~~~  220 (477)
                      .+++++..+-+++.+.+..|+++++++.|+++||+|.|+++..+.++.+++.++.+...+. ++.+++.|+++|++.+..
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~  145 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL  145 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence            4688899999999999999999999999999999999999999999999999888765532 357799999999999999


Q ss_pred             hhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcc-cChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCC
Q 011781          221 PSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-LGWESVFYIFGLLGIAWFSGFKILQEGETSNGAT  299 (477)
Q Consensus       221 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (477)
                      +|+...+.++|.|++||++..++..++..+|.+++-+++|++.+. +||+++|++.++++++..++++++..+.+.+.+.
T Consensus       146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~  225 (466)
T KOG2532|consen  146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPN  225 (466)
T ss_pred             HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Confidence            999999999999999999999999999999999999999999998 9999999999999999988888877666555433


Q ss_pred             CCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHH
Q 011781          300 LAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSI  379 (477)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~  379 (477)
                      ..++|... .+++.   .++..++..+.||+++++++.+|...+..+...++...+..|+|.|+.+.+|++..+.|++.+
T Consensus       226 is~~El~~-I~~~k---~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~sa  301 (466)
T KOG2532|consen  226 ISEKELKY-IEKGK---SEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSA  301 (466)
T ss_pred             CCHHHHHH-HHhcc---cccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHH
Confidence            32222111 11110   011111115779999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcccCCCchHHHHHHHHHHHHhhhhhhhhhhH
Q 011781          380 LPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYC  459 (477)
Q Consensus       380 ~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  459 (477)
                      +..+.+.+..+++|.++||+-.|..+.+..||....+++...+++++.+.+......+..+.++.++.++.++..+....
T Consensus       302 lP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~  381 (466)
T KOG2532|consen  302 LPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYK  381 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHh
Confidence            99999999999999999999887777888899999999999988888777655445566677777888888888888888


Q ss_pred             hhhccCccchhhhhhhc
Q 011781          460 THQDISPEYASILLYLE  476 (477)
Q Consensus       460 ~~~~~~p~~~g~~~gl~  476 (477)
                      ..++..|++.+.++|++
T Consensus       382 ~~~~~apq~a~~l~g~~  398 (466)
T KOG2532|consen  382 NHQDIAPQHAGFVMGII  398 (466)
T ss_pred             hhhhccchHHHHHHHHH
Confidence            88888999999999864

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=3.4e-31  Score=264.55  Aligned_cols=362  Identities=27%  Similarity=0.410  Sum_probs=267.1

Q ss_pred             CchhHHHHHHHHHHHHHHHhhhhHHHHhHHhhhh----------------------hhCCCcchhhHHHHHHHHHHHHhh
Q 011781          109 IPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSH----------------------RFGWNSSVAGLVQSSFFWGYALSQ  166 (477)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~g~s~~~~g~~~~~~~~~~~~~~  166 (477)
                      .+.++.+..+++++..+.+.+....+...+.+.+                      +++++..+.|++.+.+.+++.+++
T Consensus        14 ~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~   93 (465)
T TIGR00894        14 CSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQ   93 (465)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHH
Confidence            4446677778888888889999999988887766                      789999999999999999999999


Q ss_pred             hhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHH
Q 011781          167 LPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL-AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVF  245 (477)
Q Consensus       167 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~  245 (477)
                      ++.|+++||+|+|+++..+.++.+++.+++... ..+++.+++.|+++|++.+...+....++.+++|+++|++++++..
T Consensus        94 ~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  173 (465)
T TIGR00894        94 IPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMST  173 (465)
T ss_pred             cchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHH
Confidence            999999999999999999988888877665422 3446778999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHhhhHHhhcc-cChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHh-hccC
Q 011781          246 GGLSFGSVAGLLLAPPIIEN-LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEE-MGES  323 (477)
Q Consensus       246 ~~~~~g~~ig~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  323 (477)
                      .+..+|.+++|++++.+.+. .|||+.|++.+++.++..++++.+++++++..+...++++     +...+..++ .++.
T Consensus       174 ~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-----~~i~~~~~~~~~~~  248 (465)
T TIGR00894       174 SGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEK-----KYINSSLQGQKGST  248 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHH-----HHHHhhcccccCCC
Confidence            99999999999999999988 4999999999998877776666655443322211111110     000000010 1111


Q ss_pred             CCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcC
Q 011781          324 LKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG  403 (477)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~  403 (477)
                      ..+.+++++++++.+|...+..++.....+.+.+|+|.|+.+.+|++..+.++..+...++.+++.++.|+++||+++|+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~  328 (465)
T TIGR00894       249 RQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSK  328 (465)
T ss_pred             CCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            22346889999999999999999999999999999999999989999999999999999999999999999999998764


Q ss_pred             ccccee-hhhhhHHhhhhhHHHHhhhcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhhc
Q 011781          404 VETTMV-RKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYLE  476 (477)
Q Consensus       404 ~~~~~~-r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl~  476 (477)
                      ...+.. ++....++....++..+...... ...+..+.++.++.+..+...+.......+..|+..|.++|+.
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  401 (465)
T TIGR00894       329 TLSLTAARKIFNGIGGLGPGIFAYALPYLS-AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGIT  401 (465)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChhHHHHHHHHH
Confidence            322111 11222222111111121111111 2233333333444443444444555566677788888888763

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=7.1e-31  Score=257.38  Aligned_cols=287  Identities=19%  Similarity=0.270  Sum_probs=227.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHH
Q 011781          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (477)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (477)
                      +|+.+..+++.+++.+.+....+...|.+.+++|++..++|++.+++.+++.+++++.|++.||+|||+++..+.+++++
T Consensus         6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~   85 (412)
T TIGR02332         6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGI   85 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHH
Confidence            56788888888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhc------c
Q 011781          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE------N  265 (477)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~------~  265 (477)
                      +.++.+ ++++++.+++.|++.|++.+...+....++.+++|+++|++++++++....+|.++++++++++.+      .
T Consensus        86 ~~~~~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~  164 (412)
T TIGR02332        86 ASTATM-FATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMAL  164 (412)
T ss_pred             HHHHHH-HhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence            888875 677789999999999999999999999999999999999999999999999999999999998864      3


Q ss_pred             cChhHHHHHHHHHHHHHHHHHH-HhccCCcCCCCCCCCcchhhhhhhhhh-h--hHHhhcc--CCCC----CCHHHHhhc
Q 011781          266 LGWESVFYIFGLLGIAWFSGFK-ILQEGETSNGATLAPRSNYINMKKSLS-A--SLEEMGE--SLKD----VPWKAIFRS  335 (477)
Q Consensus       266 ~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~--~~~~----~~~~~~~~~  335 (477)
                      .|||+.|++.++..++..++.+ +++|++.+.+ ...++++. ...+... +  ..++.++  +...    ..++.+ ++
T Consensus       165 ~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~-~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  241 (412)
T TIGR02332       165 KGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAK-WLDEEDKK-ALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREI-FT  241 (412)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhhccCCCcccCC-CCCHHHHH-HHHHHHHhccccccccccccccccccHHHHHHHh-cC
Confidence            6999999998888776554443 4444433211 11111110 0000000 0  0000000  0000    123333 35


Q ss_pred             HHHHHHHHHHHHhHHHHHHHhhhhhHHHHHh-hCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhc
Q 011781          336 KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEE-LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       336 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~  402 (477)
                      |.+|...+..++.....+.+.+|+|.|+++. .|++..+++.+.....++.+++.++.|+++||+++|
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r  309 (412)
T TIGR02332       242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKER  309 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCcc
Confidence            7888888888888888889999999999772 367888889999999999999999999999999866

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=1.3e-30  Score=254.39  Aligned_cols=326  Identities=18%  Similarity=0.194  Sum_probs=243.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHH
Q 011781          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (477)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (477)
                      |..+..+.++.+..........+..|.+.+++|.|..++|++.+.+.+++.+++++.|++.||+|||+++..+.++.+++
T Consensus         8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   87 (390)
T PRK03545          8 WLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIAS   87 (390)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            33344444444444444445556689999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHH
Q 011781          193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF  272 (477)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~  272 (477)
                      .+.+. ..++++.+++.|++.|++.+...+...+++.+++|+++|++++|+...+..+|.+++|++++.+.+..|||+.|
T Consensus        88 ~~~~~-~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f  166 (390)
T PRK03545         88 HVLSA-LAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTF  166 (390)
T ss_pred             HHHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHH
Confidence            87774 67788999999999999999888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHH
Q 011781          273 YIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH  352 (477)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  352 (477)
                      ++.+++.++..+..+...+++++++   +..                      ..++++.+|+|.++...+..++.....
T Consensus       167 ~~~~~~~~l~~~~~~~~~~~~~~~~---~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (390)
T PRK03545        167 LAIGGGALITLLLLIKLLPLLPSEH---SGS----------------------LKSLPLLFRRPALVSLYLLTVVVVTAH  221 (390)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCC---cch----------------------HHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            9998887766554443322211110   000                      011357788888887766666666666


Q ss_pred             HHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcccC
Q 011781          353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDL  432 (477)
Q Consensus       353 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~  432 (477)
                      .....+++.|+.+..|.+...++.+.....++.++++++.+++.||++++        .. .....+.......+... .
T Consensus       222 ~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~--------~~-~~~~~~~~~~~~~l~~~-~  291 (390)
T PRK03545        222 FTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSG--------FL-LIAIALLLVCLLLLLPA-A  291 (390)
T ss_pred             HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchh--------HH-HHHHHHHHHHHHHHHHH-h
Confidence            66677888888887899999999999999999999999999999998754        22 22222222222222222 2


Q ss_pred             CCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          433 GLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       433 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                      ++.....+..++.|.+..... +.......+..|+++|+++|+
T Consensus       292 ~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~g~  333 (390)
T PRK03545        292 NSEWHLSVLSIFWGIAIMCIG-LAMQVKVLKLAPDATDVAMAL  333 (390)
T ss_pred             chHHHHHHHHHHHHHHHhcch-HHHHHHHHHhCCCcHHHHHHH
Confidence            233334445555666544433 334455556677888988875

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=6.6e-31  Score=257.01  Aligned_cols=347  Identities=24%  Similarity=0.396  Sum_probs=253.0

Q ss_pred             HHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchH
Q 011781          124 VICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFM  203 (477)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~  203 (477)
                      +....+...++...|.+.+++|.+..+.+++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++. ..+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~-~~~~~   82 (399)
T TIGR00893         4 VINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQA-FAGAY   82 (399)
T ss_pred             hHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHH-HHcCH
Confidence            45567778888899999999999999999999999999999999999999999999999999988888887775 56678


Q ss_pred             HHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHH
Q 011781          204 PGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWF  283 (477)
Q Consensus       204 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~  283 (477)
                      +.+++.|++.|++.+...+....++.|++|+++|++++++.+....+|.+++|.+++.+.+..+||+.|++.+++.++..
T Consensus        83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  162 (399)
T TIGR00893        83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWG  162 (399)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888877766


Q ss_pred             HHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHH
Q 011781          284 SGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYF  363 (477)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  363 (477)
                      +...+..++++++++...++++....+....+..++.+++.....+++.+++|.++...+..++.......+..+.|.|+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (399)
T TIGR00893       163 VLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYL  242 (399)
T ss_pred             HHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            55544433322221111111111000000000001111222334567889999999999999998889999999999999


Q ss_pred             HHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhh--HHHHhhhcccCCCchHHHHH
Q 011781          364 SEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSP--AVCMTLSSIDLGLPHWEIVG  441 (477)
Q Consensus       364 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~  441 (477)
                      ++.+|.+..+.+++.+...++.+++.++.+++.||+++|+..     ...........  ...+...........+..+.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (399)
T TIGR00893       243 VQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKS-----LVFARKTAIIAGLVLSLLMFATNYVNIPYAALA  317 (399)
T ss_pred             HHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-----hhHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence            988999999999999999999999999999999999988311     11100111111  11111111111223344444


Q ss_pred             HHHHHHHhhhhhhhhhhHhhhccCccchhhhhhhc
Q 011781          442 ILTAGLALSSFALSGLYCTHQDISPEYASILLYLE  476 (477)
Q Consensus       442 ~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl~  476 (477)
                      ...++.+..+..........+..+++++|+++|+.
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  352 (399)
T TIGR00893       318 LVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLI  352 (399)
T ss_pred             HHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHH
Confidence            44445444443433333444445667799998863

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=1.5e-30  Score=257.18  Aligned_cols=286  Identities=17%  Similarity=0.191  Sum_probs=224.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHH
Q 011781          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (477)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (477)
                      ++..+...++..+...++...++..+|.+.+++|+|..+.|++.+.+.+++.+++++.|++.||+|||+++.++.++.++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~  100 (434)
T PRK11663         21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGI  100 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHH
Confidence            34566666777777778888889999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHH
Q 011781          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (477)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~  271 (477)
                      +.++++ ..++++.+++.|++.|++.+...+...+++.+++|+++|++++++.+.+..+|.+++|.+++++.+.+|||+.
T Consensus       101 ~~~~~~-~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~  179 (434)
T PRK11663        101 INILFG-FSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYG  179 (434)
T ss_pred             HHHHHH-HHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence            887774 5677788999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH-HHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCC-H-HHHhhcHHHHHHHHHHHHh
Q 011781          272 FYIFGLLGIAWFS-GFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVP-W-KAIFRSKAVWAMIYAHFCG  348 (477)
Q Consensus       272 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~  348 (477)
                      |++.+++.++..+ ..+++++++.........+.+... .+.   ..+..+....... + ...++++.+|.+.+..++.
T Consensus       180 f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (434)
T PRK11663        180 MMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDA-LEL---AQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLV  255 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccc-ccc---chhccccCCChhhhHHHHHhcChHHHHHHHHHHHH
Confidence            9998887665443 333445433221101000000000 000   0000000000011 1 2356789999888887777


Q ss_pred             HHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhc
Q 011781          349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~  402 (477)
                      ...+..+.+|+|.|+.+.+|++..+++...+...++.++++++.|++.||+.++
T Consensus       256 ~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~  309 (434)
T PRK11663        256 YVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNG  309 (434)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccC
Confidence            777888889999999877899999999999999999999999999999999543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.98  E-value=6.7e-31  Score=252.94  Aligned_cols=334  Identities=27%  Similarity=0.421  Sum_probs=248.4

Q ss_pred             HHHHHHHHhhhhHHHHhHH-hhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHH
Q 011781          120 SLAFVICNMDKVNLSVAII-PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL  198 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  198 (477)
                      +++.++.......+.+..| .+.+++|.+..+++++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.. 
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~-   80 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA-   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh-
Confidence            4566777788888999999 89999999999999999999999999999999999999999999999999888855553 


Q ss_pred             hhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHH
Q 011781          199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLL  278 (477)
Q Consensus       199 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~  278 (477)
                      ++++.+.+++.|++.|++.+...+...+++.+++|+++|++++++.+....+|.+++|.+++.+.+..+||+.|++.+++
T Consensus        81 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~  160 (352)
T PF07690_consen   81 FASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAIL  160 (352)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHH
T ss_pred             hhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccch
Confidence            44556799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhh
Q 011781          279 GIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLS  357 (477)
Q Consensus       279 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  357 (477)
                      .++..++. .+++++++++..+.+.+++. ..           +++. ...++.++++|.+|...+..++..+.......
T Consensus       161 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~-~~-----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (352)
T PF07690_consen  161 SLIAAILFILFLPEPPPPRERESPKESES-KK-----------PKPL-KPGFKSLFKNPVLWILLIAFFLFFFVFSGFSF  227 (352)
T ss_dssp             HHHHHHHHHCCC---STTTT--SSTTTT---H-----------HHCC-CH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHhhhhhhccccccccccccccc-cc-----------cccc-ccccccccccchhhhhhhhhhHHHHHHHHhhc
Confidence            88876643 33333333322222111100 00           0000 00246777788777566666666667788999


Q ss_pred             hhhHHHHHhhCCc-hhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhccc-CCCc
Q 011781          358 WLPTYFSEELSLN-LTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSID-LGLP  435 (477)
Q Consensus       358 ~~~~~~~~~~g~~-~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~-~~~~  435 (477)
                      ++|.|+.+.+|.+ ..+.+.+.+...+...++.++.+++.||++++       +...... .......+.+.... ..+.
T Consensus       228 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~  299 (352)
T PF07690_consen  228 FLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRR-------RRLLIAI-LLLILGALGLLLLPFSSSP  299 (352)
T ss_dssp             HHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-------HHHHHHH-HHHHHHHHHHCCSHHHCHH
T ss_pred             ccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-------HHHHHHH-HHHHHHHHHHHHHHHhhhH
Confidence            9999988889999 88999999999999999999999999998865       1222222 22222222222221 1234


Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhHhhhc-cCccchhhhhhhc
Q 011781          436 HWEIVGILTAGLALSSFALSGLYCTHQD-ISPEYASILLYLE  476 (477)
Q Consensus       436 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~p~~~g~~~gl~  476 (477)
                      .+.....++.|.+.+... +......++ .+++++|+++|+.
T Consensus       300 ~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~  340 (352)
T PF07690_consen  300 VWLIIALFLIGFGFGIVF-PILFSLIQELVPPEYRGTAFGLF  340 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHC-HHHHHHHHCCCHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHH
Confidence            455566677777655554 445555555 5567899999863

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.98  E-value=6.3e-30  Score=257.25  Aligned_cols=351  Identities=20%  Similarity=0.214  Sum_probs=265.7

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHH
Q 011781          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (477)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (477)
                      +.+..++++.++..++.....+..|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+++.++.++.+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   81 (485)
T TIGR00711         2 LLTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGS   81 (485)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            34566777888888999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHH
Q 011781          194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY  273 (477)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~  273 (477)
                      +++. .+++++.+++.|++.|++.+...+...+++.+++|+++|+++++++.....+|..+||.+++++.++.+||+.|+
T Consensus        82 ~~~~-~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~  160 (485)
T TIGR00711        82 LLCG-VAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFL  160 (485)
T ss_pred             HHHh-CcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhh
Confidence            8775 677889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh-ccCCcCCCCCCCCcchhh---------------hhhhhhhhh------------------HHh
Q 011781          274 IFGLLGIAWFSGFKIL-QEGETSNGATLAPRSNYI---------------NMKKSLSAS------------------LEE  319 (477)
Q Consensus       274 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~------------------~~~  319 (477)
                      +.+.+.++..+...+. +++++++. +..+.....               ..+..+.+.                  .++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (485)
T TIGR00711       161 INVPIGIIVVVVAFFILPRDKPAAS-ENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWE  239 (485)
T ss_pred             hhhHHHHHHHHHHHHHcCCcccccc-CCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            9887776655544443 33322111 111100000               000000000                  011


Q ss_pred             hccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHH
Q 011781          320 MGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL  399 (477)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~  399 (477)
                      .+++.... ..+++++|.++...+..++..+..+....++|.|+++.+|+++.++++......++.+++.++.|++.||+
T Consensus       240 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~  318 (485)
T TIGR00711       240 LTDDNPLV-DLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI  318 (485)
T ss_pred             HcCCCCcc-CHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            11111111 24678899998888888888888888899999999998999999999999999999999999999999999


Q ss_pred             HhcCcccceehhhhhHHhhhhhHHHHhhhc--ccCCCch-HHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhhc
Q 011781          400 IATGVETTMVRKICQTIAFLSPAVCMTLSS--IDLGLPH-WEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYLE  476 (477)
Q Consensus       400 g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~--~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl~  476 (477)
                      ++|        +... .+....++...+..  ....... ......++.|.+.+....+......+..+++++|+++|+.
T Consensus       319 ~~~--------~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~  389 (485)
T TIGR00711       319 DPR--------KLVT-IGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLS  389 (485)
T ss_pred             CcH--------HHHH-HHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHH
Confidence            876        3333 33333333333222  2222233 3344456667776666666666667778888899998863

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.98  E-value=1.1e-29  Score=259.57  Aligned_cols=184  Identities=14%  Similarity=0.179  Sum_probs=160.8

Q ss_pred             chhHHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHH
Q 011781          110 PQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIW  189 (477)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  189 (477)
                      +..|.++.++.++.+...+....++..+|.+.+++|++..+.+++.+++.++.+++++++|+++||+|||++++++.++.
T Consensus       163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~  242 (742)
T TIGR01299       163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVN  242 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            34556666667777777778888899999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcc----
Q 011781          190 SLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN----  265 (477)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~----  265 (477)
                      +++.++.+ ++++++.++++|++.|++.++..+...+++.+++|+++|++.+++..++..+|.++++.++..+...    
T Consensus       243 ~i~~ll~a-fa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~  321 (742)
T TIGR01299       243 GFFAFFSS-FVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWS  321 (742)
T ss_pred             HHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            88887774 6677899999999999999999999999999999999999999999999999999999888766543    


Q ss_pred             ---------cChhHHHHHHHHHHHHHHHHHHHhccCCc
Q 011781          266 ---------LGWESVFYIFGLLGIAWFSGFKILQEGET  294 (477)
Q Consensus       266 ---------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (477)
                               .+||+.+++.++..++.++..+++||.++
T Consensus       322 ~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPr  359 (742)
T TIGR01299       322 FQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPR  359 (742)
T ss_pred             hccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence                     36899998888877777777777887754

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.97  E-value=3.2e-29  Score=247.60  Aligned_cols=331  Identities=15%  Similarity=0.155  Sum_probs=228.3

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhC---CCcchhhHHHH---HHHHHHHHhhhhhhhhhhhhcChhHHHHHHH
Q 011781          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFG---WNSSVAGLVQS---SFFWGYALSQLPGGWLAKIFGGRKVLQTGVL  187 (477)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~s~~~~g~~~~---~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~  187 (477)
                      ..+...+++.++..++...++...|.+.++++   .+..+.+...+   ...++..++++++|+++||+|||+++..+.+
T Consensus        22 ~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~  101 (432)
T PRK10406         22 WAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVC  101 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            44555667788889999999999999999985   45554444444   4444555999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhchH--------HHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhh
Q 011781          188 IWSLATALLPLLAGFM--------PGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA  259 (477)
Q Consensus       188 ~~~~~~~~~~~~~~~~--------~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~  259 (477)
                      +++++.++++ +.+++        ..++++|+++|++.+..++...+++.|++|+++|+++.++...+...|.++++.+.
T Consensus       102 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~  180 (432)
T PRK10406        102 MMCFGSLVIA-CLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVV  180 (432)
T ss_pred             HHHHHHHHHh-hcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999888875 44433        35889999999999999999999999999999999999999888888888888776


Q ss_pred             HHhh--------cccChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHH
Q 011781          260 PPII--------ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKA  331 (477)
Q Consensus       260 ~~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (477)
                      ..+.        +.+|||+.|++.++..++........+|+++.        ++.            .   ..+..++++
T Consensus       181 ~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~--------~~~------------~---~~~~~~~~~  237 (432)
T PRK10406        181 VVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQ--------ETR------------A---LKEAGSLKG  237 (432)
T ss_pred             HHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchH--------HHh------------h---hcccccHHH
Confidence            5543        25799999998777666554332222222110        000            0   001224678


Q ss_pred             HhhcHHHHHHHHHHHHh-HHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceeh
Q 011781          332 IFRSKAVWAMIYAHFCG-SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVR  410 (477)
Q Consensus       332 ~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r  410 (477)
                      ++++++.+...+..++. ...++.+.+|+|.|+++.+|++..+.+.......++..++..+.|+++||+++|        
T Consensus       238 l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr--------  309 (432)
T PRK10406        238 LWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRR--------  309 (432)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch--------
Confidence            88898888766655443 566778889999999888899998888888888888889999999999999877        


Q ss_pred             hhhhHHhhhhhHHHH-hhhcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhc-cCccchhhhhhhc
Q 011781          411 KICQTIAFLSPAVCM-TLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQD-ISPEYASILLYLE  476 (477)
Q Consensus       411 ~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~p~~~g~~~gl~  476 (477)
                      +.......+...... .+.........+..+.+..++.+..+...+.......+ .+++.||+++|+.
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~  377 (432)
T PRK10406        310 TSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLS  377 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHH
Confidence            333322222211111 11111111122222222233323232333334455444 5566799999874

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.97  E-value=5.1e-29  Score=248.46  Aligned_cols=345  Identities=13%  Similarity=0.079  Sum_probs=241.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHH
Q 011781          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (477)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (477)
                      ++.+.......+........+.+..|.+.+++|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~  114 (476)
T PLN00028         35 MRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPA  114 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            44555555566666667777888899999999999999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhc--------
Q 011781          193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE--------  264 (477)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~--------  264 (477)
                      .++.+ .+++++.++++|++.|++.+... ....++.+++|+++|++++|+.....++|..+++.+.+.+..        
T Consensus       115 ~~~~~-~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~  192 (476)
T PLN00028        115 VFCMS-LVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAP  192 (476)
T ss_pred             HHHHH-HhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            77764 56677888899999999887654 456688999999999999999988888888777766655432        


Q ss_pred             -ccChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHH
Q 011781          265 -NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIY  343 (477)
Q Consensus       265 -~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  343 (477)
                       ..|||+.|++.+++.++..+..++++++.++...+  +.++    +.       +.++......+++.++++++|.+.+
T Consensus       193 ~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~--~~~~----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  259 (476)
T PLN00028        193 SFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYR--ELKK----SG-------TMPKDSFSKVLRYGVTNYRTWILAL  259 (476)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchh--hHHh----cC-------ccccccHHHHHHHHHcCchhHHHHH
Confidence             25899999999998887766666665443221100  0000    00       0000000112456678888888877


Q ss_pred             HHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHH
Q 011781          344 AHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAV  423 (477)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~  423 (477)
                      ..++.......+..++|.|+.+.+|++...++.+.+...++.+++++++|+++||+++|...  +.|+.......++.++
T Consensus       260 ~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~--~~r~~~~~~~~~l~~i  337 (476)
T PLN00028        260 TYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGM--RGRLWALWIVQTLGGV  337 (476)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCc--chhHHHHHHHHHHHHH
Confidence            76666666667788899999888899999999999999999999999999999999986321  1123333333333333


Q ss_pred             HHhhhcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhhc
Q 011781          424 CMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYLE  476 (477)
Q Consensus       424 ~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl~  476 (477)
                      ..++.... .+....++.+++++.+.... ......+..++.|+++|++.|+.
T Consensus       338 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~  388 (476)
T PLN00028        338 FCIWLGRA-NSLGAAIVVMILFSIFVQAA-CGATFGIVPFVSRRSLGVISGLT  388 (476)
T ss_pred             HHHHhccc-chHHHHHHHHHHHHHHHHHh-hhhhcccCcccChhhchhhhhhh
Confidence            22222221 22222233333444433322 23344455567788899988874

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.97  E-value=1.4e-29  Score=244.87  Aligned_cols=334  Identities=13%  Similarity=0.070  Sum_probs=250.6

Q ss_pred             HHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHH
Q 011781          119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL  198 (477)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  198 (477)
                      ++...++..++.....+.+|.+..+++.+..++|++.+++.++..++++++|+++||+|||+++..+.++.+++.++...
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~   83 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF   83 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence            44566777788888888999999999999999999999999999999999999999999999999998887777766643


Q ss_pred             hh----chHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHH
Q 011781          199 LA----GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYI  274 (477)
Q Consensus       199 ~~----~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~  274 (477)
                      ..    .+++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|.++||.+++.+.+..|||+.|++
T Consensus        84 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~  163 (365)
T TIGR00900        84 VALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWV  163 (365)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            33    16788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHH
Q 011781          275 FGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYT  354 (477)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  354 (477)
                      .++..++..+..+.++.++++++++.+.+++.          .++.     ...++.++++|.++...+..++.......
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (365)
T TIGR00900       164 DAVGFAISALLIVSVRIPELAASEIQALSNAV----------LRDT-----REGIKFVLKNPLLRTLLLLALLFNLVFAP  228 (365)
T ss_pred             HHHHHHHHHHHHHhcccccCCCccccccchhH----------HHHH-----HhHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence            88776665555444433322211111000000          0000     11346778899998888877777777766


Q ss_pred             Hh-hhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcccCC
Q 011781          355 CL-SWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLG  433 (477)
Q Consensus       355 ~~-~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~  433 (477)
                      .. .+.|.|.++.+|.+..+.+.+.....++.+++.++.+++.||++++        +... .+....++...+.....+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~  299 (365)
T TIGR00900       229 AIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRM--------ALMT-GAIFVIGLAILVVGLTPP  299 (365)
T ss_pred             HHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh--------HHHH-HHHHHHHHHHHHHHhhch
Confidence            66 7889999877899999999999999999999999999999998765        3332 223333333333222221


Q ss_pred             CchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhhc
Q 011781          434 LPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYLE  476 (477)
Q Consensus       434 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl~  476 (477)
                      +.....+..++.|.+.+...........+..+++++|+++|+.
T Consensus       300 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (365)
T TIGR00900       300 NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQ  342 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            2233345556666665555544444455556778899998863

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.97  E-value=3e-29  Score=244.68  Aligned_cols=268  Identities=18%  Similarity=0.221  Sum_probs=223.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHH
Q 011781          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (477)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (477)
                      ++.+..+.+..+....+...+.+..|.+.+++|.++.+.+++.+++.++..+++++.|+++||+|||+.+..+.++.+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~   83 (385)
T TIGR00710         4 KAFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALS   83 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHH
Confidence            34455555555666778888888999999999999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHH
Q 011781          193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF  272 (477)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~  272 (477)
                      .+++. ..++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..+||+.|
T Consensus        84 ~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~  162 (385)
T TIGR00710        84 SLGLA-LSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIF  162 (385)
T ss_pred             HHHHH-HHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            87774 56777889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh-ccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHH
Q 011781          273 YIFGLLGIAWFSGFKIL-QEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWG  351 (477)
Q Consensus       273 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  351 (477)
                      ++.+++.++..+...+. +++++++++   ++.+     +.             ...+++.+++|.++...+...+....
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (385)
T TIGR00710       163 AFLSLAGILLSALIFFILPETLPYEAR---IQIS-----TY-------------FETFLLLLKSKMFWGYALIYGASFGG  221 (385)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCccc---CCHH-----HH-------------HHHHHHHHcCchhHHHHHHHHHHHHH
Confidence            99888777665554443 332221110   0000     00             01245778889888887777777777


Q ss_pred             HHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhc
Q 011781          352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       352 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~  402 (477)
                      ......+.|.++++.+|.++.+.+.+.....++.+++.++.+++.||+++|
T Consensus       222 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~  272 (385)
T TIGR00710       222 FFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAK  272 (385)
T ss_pred             HHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            777888899999888999999999999999999999999999999999877

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.97  E-value=4.5e-29  Score=245.05  Aligned_cols=356  Identities=13%  Similarity=0.138  Sum_probs=244.4

Q ss_pred             chhHHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHH
Q 011781          110 PQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIW  189 (477)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  189 (477)
                      +++|+.+..+++..+...++....++..|.+.+++|.+..+.+++.+++.++..+++++.|+++||+|||+++..+.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~   87 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLF   87 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            34667888888999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccC--
Q 011781          190 SLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG--  267 (477)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g--  267 (477)
                      +++.+++. +.++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+.+..+  
T Consensus        88 ~~~~~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~  166 (405)
T TIGR00891        88 SAGTLACG-FAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDG  166 (405)
T ss_pred             HHHHHHHH-HhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            88887774 567788999999999999999999999999999999999999999999999999999999999988766  


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCC--CCCHHHHh-hc-HHHHHHHH
Q 011781          268 WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLK--DVPWKAIF-RS-KAVWAMIY  343 (477)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~-~~~~~~~l  343 (477)
                      ||+.|++.++..++..+.....+++++..++...++......++.... ....+...+  ....+... +. +.+....+
T Consensus       167 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (405)
T TIGR00891       167 WRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGG-EHRIANIVMTLAAAMVQSAGKRWPTFVYLVV  245 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhcc-chhhhhhhhhhhHHhhhhhhhhhHHHHHHHH
Confidence            999998876665555544444554332111110000000000000000 000000000  00001111 11 11222333


Q ss_pred             HHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHH
Q 011781          344 AHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAV  423 (477)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~  423 (477)
                      ...+..........++|.|+.+.+|++..+.+.+.+...++.+++.++.+++.||+++|        +............
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~--------~~~~~~~~~~~~~  317 (405)
T TIGR00891       246 LVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRR--------KAYVCSLLAGQLL  317 (405)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch--------hhhHHHHHHHHHH
Confidence            33344444556677899999888899999999999999999999999999999999876        3332222222122


Q ss_pred             HHhhhcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhhc
Q 011781          424 CMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYLE  476 (477)
Q Consensus       424 ~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl~  476 (477)
                      .+.+... ..+.....+..++.+.+..+........+.+..+++++|+++|+.
T Consensus       318 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  369 (405)
T TIGR00891       318 IIPVFAI-GANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFT  369 (405)
T ss_pred             HHHHHHh-CCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHH
Confidence            2222222 122222333334444444444333333444456677799998863

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.97  E-value=3.5e-29  Score=240.44  Aligned_cols=317  Identities=16%  Similarity=0.050  Sum_probs=220.9

Q ss_pred             HHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHH
Q 011781          126 CNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPG  205 (477)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (477)
                      +......+++.+|.+.+++|+|..+.|++.+.+.+++.+++++.|+++||+|||+++..+......+. +.....++++.
T Consensus         3 ~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~-~~~~~~~~~~~   81 (368)
T TIGR00903         3 SQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAA-GRLLDPFNYEW   81 (368)
T ss_pred             hhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH-HHHHHhccHHH
Confidence            44567788899999999999999999999999999999999999999999999987765544443333 33233367889


Q ss_pred             HHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHH
Q 011781          206 LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSG  285 (477)
Q Consensus       206 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~  285 (477)
                      +++.|++.|++.+. .+.....+++++|+++|++++++...+..+|.++++.+++++.+++|||+.|++.+++.++..++
T Consensus        82 l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~  160 (368)
T TIGR00903        82 LLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIIL  160 (368)
T ss_pred             HHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence            99999999999885 55666677999999999999999999999999999999999999999999999988887665544


Q ss_pred             HH-HhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHHH
Q 011781          286 FK-ILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFS  364 (477)
Q Consensus       286 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  364 (477)
                      .+ +++|+++.+.+    ..+.   .       +.      ..++++++++|.+|.+.+..++....++++.+|+|.|++
T Consensus       161 ~~~~lp~~p~~~~~----~~~~---~-------~~------~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~  220 (368)
T TIGR00903       161 VLAALPALPFQAAE----GFGF---K-------DA------VKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALR  220 (368)
T ss_pred             HHHHcCCCCCCCCC----Ccch---H-------HH------HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44 44544322110    0000   0       00      012578899999999999999999999999999999997


Q ss_pred             HhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcccCCCchHHHHHHHH
Q 011781          365 EELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILT  444 (477)
Q Consensus       365 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  444 (477)
                      + .|++.. .+.......+.+.++   .++++||..|++.     |+.......+..++.+.+.... .+....+..+.+
T Consensus       221 ~-~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~-----r~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l  289 (368)
T TIGR00903       221 P-AGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGL-----RSIYIRAAALLIAAFFLALAFE-LNRLALFAFIGI  289 (368)
T ss_pred             H-CCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhh-----HHHHHHHHHHHHHHHHHHHHHc-cccHHHHHHHHH
Confidence            6 678765 565655656655555   4778888765421     1222221222222222222221 122222222322


Q ss_pred             HHHHhhhhhhhhhhHhhhc-cCccchhhhhhhc
Q 011781          445 AGLALSSFALSGLYCTHQD-ISPEYASILLYLE  476 (477)
Q Consensus       445 ~g~~~~~~~~~~~~~~~~~-~~p~~~g~~~gl~  476 (477)
                      .+++ .....+..+.+..+ .+++.||+++|+.
T Consensus       290 ~~~~-~~~~~~~~~~~~~~~~p~~~rgt~~G~~  321 (368)
T TIGR00903       290 AGLL-MLPAYAIIMDWIGKFCDKELHGKAAGAI  321 (368)
T ss_pred             HHHh-hhhhHHHHHHHHHHhcchhhcCcccchh
Confidence            3332 33333445555555 4555799999874

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.97  E-value=6.2e-30  Score=248.68  Aligned_cols=346  Identities=17%  Similarity=0.189  Sum_probs=247.5

Q ss_pred             HHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhc
Q 011781          122 AFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG  201 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~  201 (477)
                      +++........++...|.+.+++|.+..+.|++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++. ..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~   81 (379)
T TIGR00881         3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFG-FST   81 (379)
T ss_pred             hhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHH-Hhh
Confidence            4556777888899999999999999999999999999999999999999999999999999999999888888775 566


Q ss_pred             hHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHH-hhhHHhhcccChhHHHHHHHHHHH
Q 011781          202 FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGL-LLAPPIIENLGWESVFYIFGLLGI  280 (477)
Q Consensus       202 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~-~~~~~l~~~~g~~~~~~~~~~~~~  280 (477)
                      +++.+++.|++.|++.+...+...+++.+++|+++|++++++.+.+..+|.+++| .+++.+.+..+||+.|++.+++.+
T Consensus        82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (379)
T TIGR00881        82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAI  161 (379)
T ss_pred             hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            7889999999999999999999999999999999999999999999999999999 577777778899999999888776


Q ss_pred             HHHHHHHHh-ccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhhhh
Q 011781          281 AWFSGFKIL-QEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWL  359 (477)
Q Consensus       281 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  359 (477)
                      +..+...+. +++++.+.....++......++.  ...++.+....+..++.++++|.+|...+..++.......+..+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (379)
T TIGR00881       162 IVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGD--AEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWS  239 (379)
T ss_pred             HHHHHHheeeCCCccccccCccccCcccccccc--cccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            655444443 33322211111110000000000  000000011112235677889999998888888888888899999


Q ss_pred             hHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhccc-CCCchHH
Q 011781          360 PTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSID-LGLPHWE  438 (477)
Q Consensus       360 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~-~~~~~~~  438 (477)
                      |.|+.+.+|++..+.+...+...++.++++++.+++.||..+++      +..............+...... ..+..+.
T Consensus       240 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (379)
T TIGR00881       240 PLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGR------RGPLAVFFMALIIVSLLVYWLNPAANPLMD  313 (379)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCc------chHHHHHHHHHHHHHHHHHhcCcchhHHHH
Confidence            99999888999999999999999999999999999999975441      1222111111112222221111 1122333


Q ss_pred             HHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhhc
Q 011781          439 IVGILTAGLALSSFALSGLYCTHQDISPEYASILLYLE  476 (477)
Q Consensus       439 ~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl~  476 (477)
                      .+..++.|....+..........+..+++++|+++|+.
T Consensus       314 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  351 (379)
T TIGR00881       314 LICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFV  351 (379)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHH
Confidence            34444455443333333333344556677799998864

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.97  E-value=1.2e-28  Score=242.11  Aligned_cols=334  Identities=19%  Similarity=0.229  Sum_probs=244.3

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHH
Q 011781          111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS  190 (477)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  190 (477)
                      ++|..+...+...+...++....+...|.+.+++|.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   91 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFG   91 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence            45667777777888888999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhH
Q 011781          191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES  270 (477)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~  270 (477)
                      ++.+++. ..++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+|++
T Consensus        92 ~~~~~~~-~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  170 (406)
T PRK11551         92 LFSLATA-QAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRH  170 (406)
T ss_pred             HHHHHHH-HhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHH
Confidence            8776664 567788999999999999999999999999999999999999999999999999999999999988899999


Q ss_pred             HHHHHHHHHHHHHHHHH-HhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhh---cHHHHHHHHHHH
Q 011781          271 VFYIFGLLGIAWFSGFK-ILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFR---SKAVWAMIYAHF  346 (477)
Q Consensus       271 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~  346 (477)
                      .|++.+++.++..+... +++++++...++..++.+     +               ...+..++   .+..+...+..+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~---------------~~~~~~~~~~~~~~~~~~~~~~~  230 (406)
T PRK11551        171 IFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR-----A---------------PVLRALFGEGRATATLLLWISYF  230 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh-----h---------------hhHHHHhhhhhhhHHHHHHHHHH
Confidence            99998876655544333 345443221111000000     0               00011111   223333444444


Q ss_pred             HhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHh
Q 011781          347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMT  426 (477)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~  426 (477)
                      +.....+....++|.|+++ .|++..+.+.+.+...++.++++++.|++.||++++        +.... ..+...+.+.
T Consensus       231 ~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~--------~~~~~-~~~~~~~~~~  300 (406)
T PRK11551        231 FTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPR--------RVVLL-IYAGILASLA  300 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH--------HHHHH-HHHHHHHHHH
Confidence            4455566777889999976 699999999999999999999999999999999876        33322 2222222222


Q ss_pred             hhcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhhc
Q 011781          427 LSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYLE  476 (477)
Q Consensus       427 l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl~  476 (477)
                      .... ..+.....+..++.|.+..+..........+..+++++|+++|+.
T Consensus       301 ~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~  349 (406)
T PRK11551        301 ALAA-APSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAA  349 (406)
T ss_pred             HHHh-cCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHH
Confidence            2222 122333344445555555444444444444556777799998864

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.97  E-value=2.7e-28  Score=237.70  Aligned_cols=324  Identities=15%  Similarity=0.153  Sum_probs=233.6

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHH
Q 011781          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (477)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (477)
                      .|+.+..+..+.+............+|.+.+++|.++.+.|+..+++.++..+++++.|++.||+|||+++..+.++.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~   97 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTL   97 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence            34444444444444444444555678889999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHH
Q 011781          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (477)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~  271 (477)
                      +.+++. ..++++.+++.|++.|++.+...+...+++.|++|+++|++++++.....++|.++||.+++.+.+.+|||+.
T Consensus        98 ~~~~~~-~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~  176 (394)
T PRK10213         98 SCLLVS-FANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNV  176 (394)
T ss_pred             HHHHHH-HHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHH
Confidence            887775 5788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-hccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHH
Q 011781          272 FYIFGLLGIAWFSGFKI-LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSW  350 (477)
Q Consensus       272 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  350 (477)
                      |++.+++.++..+.... .++.+.   ++ .+.                      ..+.++.+++|.+|...+..++...
T Consensus       177 f~~~~~l~~~~~l~~~~~~p~~~~---~~-~~~----------------------~~~~~~~l~~~~~~~~~~~~~~~~~  230 (394)
T PRK10213        177 FNAAAVMGVLCIFWIIKSLPSLPG---EP-SHQ----------------------KQNTFRLLQRPGVMAGMIAIFMSFA  230 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCc---cc-ccc----------------------hhHHHHHhcCHHHHHHHHHHHHHHH
Confidence            99988766654433322 232211   00 000                      0123567889999887776666666


Q ss_pred             HHHHHhhhh-hHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhc
Q 011781          351 GHYTCLSWL-PTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSS  429 (477)
Q Consensus       351 ~~~~~~~~~-~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~  429 (477)
                      .......++ |.|. +++|+++...+.+....+++.+++.++.+++.||.++         +.......+..+..+.+..
T Consensus       231 ~~~~~~~~~~p~~~-~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~---------~~l~~~~~~~~~~~~~l~~  300 (394)
T PRK10213        231 GQFAFFTYIRPVYM-NLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK---------LALAGAPLVLAVSALVLTL  300 (394)
T ss_pred             HHHHHHHHHHHHHH-HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch---------hHHHHHHHHHHHHHHHHHH
Confidence            666666676 5555 5679999999999999999999999999999998532         2222222222222222222


Q ss_pred             ccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhh
Q 011781          430 IDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLY  474 (477)
Q Consensus       430 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~g  474 (477)
                      . .++.....+..++.|.+.+... +......++..|++.+++.+
T Consensus       301 ~-~~~~~~~~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~  343 (394)
T PRK10213        301 W-GSDKIVATGVAIIWGLTFALVP-VGWSTWITRSLADQAEKAGS  343 (394)
T ss_pred             H-hhhHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHCcccHHHHHH
Confidence            2 1223333444555565554444 44444444444566555544

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.97  E-value=7e-29  Score=245.38  Aligned_cols=278  Identities=19%  Similarity=0.248  Sum_probs=212.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHH
Q 011781          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (477)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (477)
                      +++.+....+..+...++.....+..|.+.+++|+++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~   95 (426)
T PRK12307         16 QKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSV   95 (426)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            44566677778888888888899999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHH
Q 011781          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (477)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~  271 (477)
                      +.++.+ ..++++.++++|++.|++.+...+....++.|++|+++|++++++...+..+|.++++.+.+.+.+..+||+.
T Consensus        96 ~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~  174 (426)
T PRK12307         96 GTGLSG-LASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAA  174 (426)
T ss_pred             HHHHHH-HHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHH
Confidence            887775 5677899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHH---Hh
Q 011781          272 FYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF---CG  348 (477)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~  348 (477)
                      |++..+..++........+++++..+++.+++.      +     .++.........++.+++++.++...+...   ..
T Consensus       175 f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (426)
T PRK12307        175 FFVGLLPVLLVIYIRARAPESKEWEEAKLSGKG------K-----HSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSI  243 (426)
T ss_pred             HHHHHHHHHHHHHHHHHCCCChHHHHhhhhccc------c-----ccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHH
Confidence            988544333222211111221110000000000      0     000000001124567788887765443222   22


Q ss_pred             HHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhc
Q 011781          349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~  402 (477)
                      ......+..++|.|+++ .|.++...+.+.+...++.++++++.|++.||+++|
T Consensus       244 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~  296 (426)
T PRK12307        244 FGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLK  296 (426)
T ss_pred             HHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            23334467789999976 699999999999999999999999999999999876

>PRK03699 putative transporter; Provisional

Probab=99.97  E-value=2e-28  Score=239.20  Aligned_cols=329  Identities=17%  Similarity=0.167  Sum_probs=243.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHH
Q 011781          111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS  190 (477)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  190 (477)
                      ++++.....++..++........+...|.+.+++|+|..+.+++.+.+.+++.+++++.|++.||+|||+++..+.++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~   83 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI   83 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            35567777777888888888889999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhc-ccChh
Q 011781          191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-NLGWE  269 (477)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~-~~g~~  269 (477)
                      ++.++.. ..++++.+++.|++.|++.+...+....++.+++|+++|+++++..+....+|..++|.+.+.+.. ..|||
T Consensus        84 i~~~l~~-~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~  162 (394)
T PRK03699         84 LAVAGLM-FSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWY  162 (394)
T ss_pred             HHHHHHH-HcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence            8887774 567778899999999999998888999999999998899999999999999999999999888764 57999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhH
Q 011781          270 SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGS  349 (477)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  349 (477)
                      +.|++.+++.++..+..++...++.+++ + .++.+                 ...    +. ..++.++...+..++..
T Consensus       163 ~~f~~~~~~~~~~~~~~~~~~~p~~~~~-~-~~~~~-----------------~~~----~~-~~~~~~~~~~~~~~~~~  218 (394)
T PRK03699        163 WVYACIGLVYVAIFILTLFSEFPALGKH-A-PKADK-----------------PVA----KE-KWGIGVLFLAIAALLYI  218 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcccccc-C-ccccC-----------------ccc----cc-cCChHHHHHHHHHHHHH
Confidence            9999988877665554443221111110 0 00000                 000    01 12456677777777777


Q ss_pred             HHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhc
Q 011781          350 WGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSS  429 (477)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~  429 (477)
                      ..+..+..|+|.|+++.+|+++.+.+.+.+...++..+++++.++++||+++|        +....... +..+.+.+..
T Consensus       219 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~--------~~l~~~~~-~~~~~~~~~~  289 (394)
T PRK03699        219 LAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQ--------RILTVLAG-LALVLMYLFV  289 (394)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchh--------hHHHHHHH-HHHHHHHHHH
Confidence            77788899999999888999999999999999999999999999999999876        33332222 2222222222


Q ss_pred             ccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          430 IDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       430 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                      . .++..+..+..++.|++.+... +.......+..|+++++..|.
T Consensus       290 ~-~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~g~  333 (394)
T PRK03699        290 N-TDDPSHLLYAILGLGFFSSAIY-TTIITLGSQQTKVASPKLVNF  333 (394)
T ss_pred             H-cCCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHccCCCHHHHHH
Confidence            2 2233444455556666544443 333334444445555555543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.97  E-value=5.7e-29  Score=241.75  Aligned_cols=319  Identities=16%  Similarity=0.156  Sum_probs=232.5

Q ss_pred             hhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHH
Q 011781          128 MDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV  207 (477)
Q Consensus       128 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (477)
                      .....+++..|.+.+++|++..+.|++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+++. ..++++.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~   95 (377)
T TIGR00890        17 GYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYA-IADSLAALY   95 (377)
T ss_pred             hHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHH-HHHHHHHHH
Confidence            3456678889999999999999999999999999999999999999999999999999999888887774 677889999


Q ss_pred             HHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHHHH
Q 011781          208 LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFK  287 (477)
Q Consensus       208 ~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  287 (477)
                      +.|++.|++.+..++.....+.+++| ++|+++.++...+..+|..+++.+.+.+.+..|||+.|++.+++.++..+..+
T Consensus        96 ~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  174 (377)
T TIGR00890        96 LTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGA  174 (377)
T ss_pred             HHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888888888889887 68999999999999999988877777777888999999999988877665555


Q ss_pred             HhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHhh
Q 011781          288 ILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEEL  367 (477)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  367 (477)
                      ++.++++++..+++++.+                  .++...++.++++.++...+..++..........+.+.|.++ +
T Consensus       175 ~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  235 (377)
T TIGR00890       175 FLIGYPPGQLIKTNIEVS------------------VKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQS-L  235 (377)
T ss_pred             HheecCchhccccCcccc------------------hhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHH-c
Confidence            443322211111000000                  001134577888888887777666666666666777777754 7


Q ss_pred             CCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcccCCCch-HHHHHHHHHH
Q 011781          368 SLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPH-WEIVGILTAG  446 (477)
Q Consensus       368 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~g  446 (477)
                      |.+..+.+.+.+...++.++++++.|++.||+++|        +.... +.....+...+......... .......+.+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  306 (377)
T TIGR00890       236 GLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQ--------KTMSI-VFGISAVGMAAMLFIPMLNDVLFLATVALVF  306 (377)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------hhhhH-HHHHHHHHHHHHHHcccchhHHHHHHHHHHH
Confidence            88888899999999999999999999999999876        33322 22222222222222221112 2223334445


Q ss_pred             HHhhhhhhhhhhHhhhccCccchhhhhhhc
Q 011781          447 LALSSFALSGLYCTHQDISPEYASILLYLE  476 (477)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~p~~~g~~~gl~  476 (477)
                      .+.+...........+..+++++|+++|+.
T Consensus       307 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~  336 (377)
T TIGR00890       307 FTWGGTISLFPSLVSDIFGPANSAANYGFL  336 (377)
T ss_pred             HHhccchhccHHHHHHHhhhhhhhhHhHHH
Confidence            444443333333344456677799988863

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.97  E-value=1.1e-28  Score=239.04  Aligned_cols=340  Identities=16%  Similarity=0.141  Sum_probs=239.5

Q ss_pred             HHHHHHHHHHhhhhHHHHhHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHH
Q 011781          118 TTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL  196 (477)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  196 (477)
                      ..+++.+........+.+..|. +.+++|+++.+.+++.+++.+++.++++++|+++||+|||+.+.++.++..++.+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~   84 (366)
T TIGR00886         5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWA   84 (366)
T ss_pred             HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            4566666777888889999995 889999999999999999999999999999999999999999999999998888877


Q ss_pred             HHhhc-hHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhc----------c
Q 011781          197 PLLAG-FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE----------N  265 (477)
Q Consensus       197 ~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~----------~  265 (477)
                      + ..+ +++.+++.|++.|++.+ ..+....++.+++|+++|++++++.....++|..+++.+++.+..          .
T Consensus        85 ~-~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~  162 (366)
T TIGR00886        85 G-LAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH  162 (366)
T ss_pred             H-HHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            5 455 77889999999999865 456678899999999999999999998888888888888776654          3


Q ss_pred             cChhHHH-HHHHHHHHHHHHHHH-HhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHH
Q 011781          266 LGWESVF-YIFGLLGIAWFSGFK-ILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIY  343 (477)
Q Consensus       266 ~g~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  343 (477)
                      .+||+.| +..+++.++..++.+ ..++.+++++++.+.+.+.  ...  .      .++.......+.+++|.+|...+
T Consensus       163 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~------~~~~~~~~~~~~~~~~~~~~~~~  232 (366)
T TIGR00886       163 LAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKG--ARW--S------VGTGALGDQLKVFRDRHTWILAL  232 (366)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhccccc--ccc--c------ccchhHHHHHHHHhccchhhHHH
Confidence            4899999 444555444433333 3333322111110000000  000  0      00000013457788888888888


Q ss_pred             HHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHH
Q 011781          344 AHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAV  423 (477)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~  423 (477)
                      ..++..........+.|.|+++.+|+++.+++.+.....+..+++++++|++.||+|+|       +.............
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~-------~~~~~~~~~~~~~~  305 (366)
T TIGR00886       233 LYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGA-------RKLLMSFLGVAMGA  305 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccc-------hhHHHHHHHHHHHH
Confidence            77777777788889999999988999999999999999999999999999999999886       22222222222222


Q ss_pred             HHhhhcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhhc
Q 011781          424 CMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYLE  476 (477)
Q Consensus       424 ~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl~  476 (477)
                      .++..........+..+..........+...........++.|+++|+++|+.
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~g~~  358 (366)
T TIGR00886       306 FLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRRATGAVSGLV  358 (366)
T ss_pred             HHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhchhhcccHHHHH
Confidence            22222221111233333333333333344445566666777788999999863

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.97  E-value=1.2e-28  Score=241.91  Aligned_cols=332  Identities=16%  Similarity=0.138  Sum_probs=246.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHH
Q 011781          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (477)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (477)
                      +.....+.+..+...+....+.+.+|.+.+++|.+..+.++..+.+.+++.+++++.|+++||+|||+++..+..+.+++
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~   91 (406)
T PRK15402         12 LLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILT   91 (406)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            34445555666666778888888899999999999999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHH
Q 011781          193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF  272 (477)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~  272 (477)
                      .+++. ..++++.+++.|++.|++.+...+...+.+.|.+|+++|.+++++......+|..+||.+++.+.+..+||+.|
T Consensus        92 ~~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~  170 (406)
T PRK15402         92 CLAIL-LAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMF  170 (406)
T ss_pred             HHHHH-HHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHH
Confidence            77764 56777889999999999999888999999999999999999999999888999999999999999989999999


Q ss_pred             HHHHHHHHHHHHHHHH-hccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHH
Q 011781          273 YIFGLLGIAWFSGFKI-LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWG  351 (477)
Q Consensus       273 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  351 (477)
                      ++.+++.++..+..++ .++++++..+    +.+.    +   +         ...+++.++++|.++...+..++....
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----~---~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (406)
T PRK15402        171 VLFAALAALSFFGLWRAMPETAGRVGE----KLSL----K---E---------LGRDYKLVLKNRRFVAGALALGLVSLP  230 (406)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCccccc----cccH----H---H---------HHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            9988887766554433 3333211110    0000    0   0         011246788999998888777776666


Q ss_pred             HHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhc--
Q 011781          352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSS--  429 (477)
Q Consensus       352 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~--  429 (477)
                      ......+.|.|+.+.+|+++.+.++......++.+++.++.+++.||+++|        +.... +.+..++.+.+..  
T Consensus       231 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~--------~~~~~-~~~~~~~g~~~~~~~  301 (406)
T PRK15402        231 LLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLR--------SLIRM-GLWPMVAGLLLAALA  301 (406)
T ss_pred             HHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--------HHHHH-HHHHHHHHHHHHHHH
Confidence            667777889998888899999999888888888999999999999999876        33222 2222222211111  


Q ss_pred             --ccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          430 --IDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       430 --~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                        ....+..+..+..++.+.+.+.... ..........++++|++.|+
T Consensus       302 ~~~~~~~~~~~~~~~~~~g~g~~~~~~-~~~~~~~~~~~~~~g~~~~~  348 (406)
T PRK15402        302 TVISSHAYLWLTAGLSLYAFGIGLANA-GLYRLTLFSSDVSKGTVSAA  348 (406)
T ss_pred             HHcccccHHHHHHHHHHHHHHHHHHhh-hHHHHHhhhccccccHHHHH
Confidence              1112333444555666666544433 33334445566789998875

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.97  E-value=1.8e-28  Score=239.04  Aligned_cols=324  Identities=14%  Similarity=0.139  Sum_probs=236.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHH
Q 011781          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (477)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (477)
                      +|.....+++..+... .....++.+|.+.+++|+|..+.|++.+.+.+++.+++++.|+++||+|||+++..+.+++++
T Consensus         8 ~~~~~~~~~~~~~~~~-~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~   86 (393)
T PRK09705          8 NFMLLVLVLIGLNMRP-LLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAV   86 (393)
T ss_pred             HHHHHHHHHHHHHcch-hhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHH
Confidence            3444444444433332 236677889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhccc-ChhH
Q 011781          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-GWES  270 (477)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~-g~~~  270 (477)
                      +.++++ ++++++.+++.|++.|++.+...+....++.+++| ++|+++++++..+..+|..+|+.+++++.++. +||+
T Consensus        87 ~~~~~~-~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~  164 (393)
T PRK09705         87 GALMRE-LYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQ  164 (393)
T ss_pred             HHHHHH-HCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            998885 67778899999999999999999999999999997 88999999999999999999999999988875 8999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHH
Q 011781          271 VFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSW  350 (477)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  350 (477)
                      .+.+.++..++..+..+...+++++++++  ++                       ...++.+++++.|...+..++...
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----------------------~~~~~~l~~~~~~~l~~~~~~~~~  219 (393)
T PRK09705        165 TLAWWALPAVVALFAWWWQSAREVASSHK--TT-----------------------TTPVRVVFTPRAWTLGVYFGLING  219 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCccccC--CC-----------------------cCCcccccCHhHHHHHHHHHHHHH
Confidence            88876666554443333332222111000  00                       001244567888877777777777


Q ss_pred             HHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcc
Q 011781          351 GHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSI  430 (477)
Q Consensus       351 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~  430 (477)
                      .+.....++|.|+++ +|.+..+++...+..+++.++++++.+++.||+++|        +..... ..+.++.......
T Consensus       220 ~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~--------~~~~~~-~~l~~~~~~~~~~  289 (393)
T PRK09705        220 GYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRR--------KLLMLA-LVLQLVGFCGFIW  289 (393)
T ss_pred             HHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccch--------HHHHHH-HHHHHHHHHHHHH
Confidence            888899999999987 799999999999999999999999999999999876        333322 2222222222211


Q ss_pred             cCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccC-ccchhhhhhh
Q 011781          431 DLGLPHWEIVGILTAGLALSSFALSGLYCTHQDIS-PEYASILLYL  475 (477)
Q Consensus       431 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-p~~~g~~~gl  475 (477)
                      ...+....  ..++.|.+.+...+.......+..+ ++++|+++|+
T Consensus       290 ~~~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~  333 (393)
T PRK09705        290 LPLQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAF  333 (393)
T ss_pred             ccchHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHH
Confidence            11222222  2233455544444444334455554 4568888875

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.97  E-value=1.9e-28  Score=243.52  Aligned_cols=285  Identities=16%  Similarity=0.238  Sum_probs=209.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHH
Q 011781          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (477)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (477)
                      |..+...++...........+....|.+.++ |++..+.|++.+.+.+++.+++++.|+++||+|||++++.+.++.+++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~  106 (452)
T PRK11273         28 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAV  106 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHH
Confidence            3444444455555555556677788888887 999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHhh---chHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHH-HHHhhhHHhhcccCh
Q 011781          193 TALLPLLA---GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSV-AGLLLAPPIIENLGW  268 (477)
Q Consensus       193 ~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-ig~~~~~~l~~~~g~  268 (477)
                      .+++....   .+++.+++.|++.|++.+...+.....+.+++|+++|++++++++.+..+|.. ++|+++..+....+|
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw  186 (452)
T PRK11273        107 MLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDW  186 (452)
T ss_pred             HHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccH
Confidence            77665332   35677889999999999988888888999999999999999999999998864 555554444344599


Q ss_pred             hHHHHHHHHHHHHHHH-HHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCC-CCC-HHHHhhcHHHHHHHHHH
Q 011781          269 ESVFYIFGLLGIAWFS-GFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLK-DVP-WKAIFRSKAVWAMIYAH  345 (477)
Q Consensus       269 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~  345 (477)
                      |+.|++.+++.++..+ ..++++++++.......++.+. ...+..   .+..+++.. +.. .+.+++++.+|...+..
T Consensus       187 ~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (452)
T PRK11273        187 HAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKN-DYPDDY---NEKHEQELTAKQIFMQYVLPNKLLWYIAIAN  262 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhh-cccccc---ccccCCCccHHHHHHHHHHcChHHHHHHHHH
Confidence            9999998887766544 4444554433211110000000 000000   000000000 011 13467899999988888


Q ss_pred             HHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhc
Q 011781          346 FCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~  402 (477)
                      ++.....+....++|.|+++..|++..+++.+.....++.+++.++.|+++||++++
T Consensus       263 ~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~  319 (452)
T PRK11273        263 VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG  319 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            888888888899999999988899999999988899999999999999999999643

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.97  E-value=3e-28  Score=244.30  Aligned_cols=343  Identities=18%  Similarity=0.141  Sum_probs=229.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcch-hhH-----HHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHH
Q 011781          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSV-AGL-----VQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGV  186 (477)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-~g~-----~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~  186 (477)
                      ++.+....++.++..++...++...|.+.++++.+... .++     +.++..++..++++++|+++||+|||+++.++.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            35666777888899999999999999999998644322 122     246777899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhchHH--------HHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhh
Q 011781          187 LIWSLATALLPLLAGFMP--------GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLL  258 (477)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~  258 (477)
                      ++++++.++++ +++++.        .++++|+++|++.+..++...+++.|++|+++||++.++...+..+|..+|+.+
T Consensus        95 ~l~~i~~~~~a-~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~  173 (490)
T PRK10642         95 VIMSISTFCIG-LIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGV  173 (490)
T ss_pred             HHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            99999998886 555554        378999999999999999999999999999999999999998888888888866


Q ss_pred             hHHhh--------cccChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHH
Q 011781          259 APPII--------ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWK  330 (477)
Q Consensus       259 ~~~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (477)
                      ...+.        ..+|||+.|++.+++.++..++...++|++......     +..  ++.   ..+. ..+.++.+++
T Consensus       174 ~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~-----~~~--~~~---~~~~-~~~~~~~~~~  242 (490)
T PRK10642        174 VVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHV-----DKL--EQG---DREG-LQDGPKVSFK  242 (490)
T ss_pred             HHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHH-----Hhh--hhh---cccc-ccccccCCHH
Confidence            65443        257999999997765555444433444432211000     000  000   0000 0011223466


Q ss_pred             HHhhc-HHHHHH-HHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccce
Q 011781          331 AIFRS-KAVWAM-IYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTM  408 (477)
Q Consensus       331 ~~~~~-~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~  408 (477)
                      +++++ ++.+.. ....++....++.+..++|.|+++.+|++....++......++.+++.++.|+++||+|+|      
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr------  316 (490)
T PRK10642        243 EIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRR------  316 (490)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH------
Confidence            66653 233322 2333445567778888999999877899988888888888889999999999999999987      


Q ss_pred             ehhhhhHHhhhhhHHHHh-hhcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          409 VRKICQTIAFLSPAVCMT-LSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       409 ~r~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                        +.+...........+. +......+.....+..++.+++.+..............+++.||+++|+
T Consensus       317 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~  382 (490)
T PRK10642        317 --PFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAA  382 (490)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHH
Confidence              3333222211211111 1111122222333334444444333332233333445667779988875

>PRK10504 putative transporter; Provisional

Probab=99.97  E-value=7.2e-28  Score=241.17  Aligned_cols=351  Identities=20%  Similarity=0.219  Sum_probs=254.8

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHH
Q 011781          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (477)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (477)
                      +.+..++++.++...+...+.+..|.+.+++|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~   89 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGS   89 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence            34556677778888888889999999999999999999999999999999999999999999999999999988888887


Q ss_pred             HHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHH
Q 011781          194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY  273 (477)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~  273 (477)
                      +++. ..++++.+++.|+++|++.+...+....++.+++|+++|++++++......+|..+||.+++.+.++.|||+.|+
T Consensus        90 ~~~~-~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~  168 (471)
T PRK10504         90 LFCA-LSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFL  168 (471)
T ss_pred             HHHH-HhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHH
Confidence            7764 567778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhh-------------hhhh--hhh-----------------hhHHhhc
Q 011781          274 IFGLLGIAWFSGFKILQEGETSNGATLAPRSNYI-------------NMKK--SLS-----------------ASLEEMG  321 (477)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~--~~~-----------------~~~~~~~  321 (477)
                      +...+..+..+......++.+....+. +.....             ...+  ...                 ...++.+
T Consensus       169 ~~~~~~~l~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (471)
T PRK10504        169 INIPVGIIGAIATLMLMPNYTMQTRRF-DLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARN  247 (471)
T ss_pred             HHHHHHHHHHHHHHHhCCCccccCCCC-ChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            988776665554444433222111111 100000             0000  000                 0001111


Q ss_pred             cCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHh
Q 011781          322 ESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIA  401 (477)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~  401 (477)
                      ......+. ++++||.++...+..++..........+.|.|++..+|.++...++......++.+++.++.+++.||+|+
T Consensus       248 ~~~~~~~~-~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~  326 (471)
T PRK10504        248 NNRALFSL-KLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGY  326 (471)
T ss_pred             CCCCccCH-HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            11122233 57899999988888888887777777888999987789999999999988888899999999999999987


Q ss_pred             cCcccceehhhhhHHhhhhhHHHHhhhcccCCCchH-HHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          402 TGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHW-EIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       402 ~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                      |        +.......+.......+.........+ ..+..++.|.+.+...........+.++++.+|+++|+
T Consensus       327 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  393 (471)
T PRK10504        327 R--------RVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSL  393 (471)
T ss_pred             h--------HHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHH
Confidence            6        444333333333333332222222222 23334445555454444444445556677778888775

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.97  E-value=2.4e-28  Score=237.61  Aligned_cols=262  Identities=16%  Similarity=0.261  Sum_probs=216.0

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHH
Q 011781          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (477)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (477)
                      +.+..+....+..........+.+|.+.+++|.+..+.|++.+.+.+++.++++++|++.||+|||+++..+.++.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   82 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGN   82 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHH
Confidence            34456666777788888889999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHH
Q 011781          194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY  273 (477)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~  273 (477)
                      ++++ .+++++.+++.|++.|++.+...+....++.+++++++|++++++...+..+|..++|.+++++.+..+||+.|+
T Consensus        83 ~l~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~  161 (382)
T PRK10091         83 AMFT-LSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFL  161 (382)
T ss_pred             HHHH-HhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHH
Confidence            8774 677889999999999999998888888999999998899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH-HhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHH
Q 011781          274 IFGLLGIAWFSGFK-ILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH  352 (477)
Q Consensus       274 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  352 (477)
                      +.+++.++..+..+ .+|+.+++  .+  .+.     ++                 ..+.++++..|...+..++.....
T Consensus       162 ~~~~~~~~~~~~~~~~lp~~~~~--~~--~~~-----~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~  215 (382)
T PRK10091        162 LIAVFNIAVLASIYFWVPDIRDE--AK--GGL-----RE-----------------QFHFLRSPAPWLIFAATMFGNAGV  215 (382)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcc--cc--cCH-----HH-----------------HHHHhcChHHHHHHHHHHHHHHHH
Confidence            99887766554433 34432211  00  000     00                 024466777777666555555555


Q ss_pred             HHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhc
Q 011781          353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       353 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~  402 (477)
                      .....+++.|+.+.+|+++.+.+++....+++.++++++.+++.||++++
T Consensus       216 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~  265 (382)
T PRK10091        216 FAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPL  265 (382)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCch
Confidence            55667778888777899999999999999999999999999999999876

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.97  E-value=1.5e-27  Score=233.20  Aligned_cols=331  Identities=17%  Similarity=0.148  Sum_probs=243.3

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHH
Q 011781          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (477)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (477)
                      .++.+.......++..+....+.+.+|.+.+++|.++.+.+++.+++.++..++++++|+++||+|||+.+..+.++..+
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~   85 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFIL   85 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHH
Confidence            45666666666666677778888889999999999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHH
Q 011781          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (477)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~  271 (477)
                      +.++.. ..++++.+++.|++.|++.+...+....+..+.++++++++++++.+.+..++..++|.+++.+.+..|||+.
T Consensus        86 ~~~~~~-~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~  164 (394)
T PRK11652         86 GTLVAL-FAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRAC  164 (394)
T ss_pred             HHHHHH-HHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHH
Confidence            877764 5677889999999999998888888888999999989999999999999999999999999999998999999


Q ss_pred             HHHHHHHHHHHHHHH-HHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHH
Q 011781          272 FYIFGLLGIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSW  350 (477)
Q Consensus       272 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  350 (477)
                      |++.+++.++..+.. ++.+|+++.+++    +.+   .                ...++..+++|.++...+..+....
T Consensus       165 f~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~----------------~~~~~~~~~~~~~~~~~~~~~~~~~  221 (394)
T PRK11652        165 YLFLLLLGAGVTFSMARWMPETRPADAR----RTR---V----------------LASYRTLLSNRRFNCYLLMLIGTLA  221 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhCCccCccccc----hhH---H----------------HHHHHHHHcChHHHHHHHHHHHHHH
Confidence            999887766554433 344443221110    000   0                1124577888888876666666565


Q ss_pred             HHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcc
Q 011781          351 GHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSI  430 (477)
Q Consensus       351 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~  430 (477)
                      ....+..+.+.++++.+|.++.+.+++.....++.+++..+.+++.||++++        ............+.+.....
T Consensus       222 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~  293 (394)
T PRK11652        222 GIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--------MWQSVICCLLAGLLMWIPGW  293 (394)
T ss_pred             HHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence            6666677788899888899999999988888888888999999999998733        22222222222222222211


Q ss_pred             c-CCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          431 D-LGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       431 ~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                      . ..+.........+.+.+.+. ..+.......+..|+++|++.++
T Consensus       294 ~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~  338 (394)
T PRK11652        294 FGVMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFPYLAGTAGAL  338 (394)
T ss_pred             hccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccccchHHHHH
Confidence            1 11222333344455555443 34555555556667788888765

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.97  E-value=7.1e-28  Score=232.92  Aligned_cols=261  Identities=13%  Similarity=0.119  Sum_probs=207.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHhhhh-hhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHH
Q 011781          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSH-RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (477)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (477)
                      ++.+....++.++.+.....+++..+.+.+ ++|+|.+|.+++.+++.+++.++.++.|++.||+|.|+++.++.++.++
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i  112 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILII  112 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            456777778888888999999999888766 8999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHh----hchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhh----
Q 011781          192 ATALLPLL----AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII----  263 (477)
Q Consensus       192 ~~~~~~~~----~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~----  263 (477)
                      ..+..++.    .++++.+++.|++.|++ +..++.....+++++|+++||+++|+.....++|..++++++..+.    
T Consensus       113 ~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l  191 (462)
T PRK15034        113 PCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPV  191 (462)
T ss_pred             HHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            88777542    16789999999999998 7788999999999999999999999997777777766655554432    


Q ss_pred             -c-------------ccChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCH
Q 011781          264 -E-------------NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPW  329 (477)
Q Consensus       264 -~-------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (477)
                       +             ..+|+.++++.+++.++..+..++..++.+..+.   ..                       ...
T Consensus       192 ~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~~---~~-----------------------~~~  245 (462)
T PRK15034        192 FAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSRA---SI-----------------------ADQ  245 (462)
T ss_pred             HHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccc---CH-----------------------HHH
Confidence             2             2347888888877777666665555443321110   00                       113


Q ss_pred             HHHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhc
Q 011781          330 KAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       330 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~  402 (477)
                      ...+|+|+.|.+.+..++.+..+.++..++|.|+++.+  +............+...++++++|+++||+|++
T Consensus       246 ~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~  316 (462)
T PRK15034        246 LPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGV  316 (462)
T ss_pred             HHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCch
Confidence            57899999999999999988888889899999998754  333333334445677888999999999999987

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.97  E-value=2.8e-28  Score=224.59  Aligned_cols=333  Identities=19%  Similarity=0.224  Sum_probs=258.9

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHH
Q 011781          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (477)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (477)
                      +++.+....++....+..+..+++..+.+.+++|+|+.|.+++.++..+...+..++.|.+.||+|.|++..++.++..+
T Consensus        12 ~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~I   91 (417)
T COG2223          12 ARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLI   91 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHH
Confidence            45667777777788888899999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHhhc--hHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccC--
Q 011781          192 ATALLPLLAG--FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG--  267 (477)
Q Consensus       192 ~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g--  267 (477)
                      ..+...+...  +++.+++++++.|++ |..+......++.++||+++|.++|++. ..++|..+..+++..+....|  
T Consensus        92 P~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~  169 (417)
T COG2223          92 PCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFL  169 (417)
T ss_pred             HHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhH
Confidence            8777654332  235899999999998 5566888999999999999999999999 999999999999999998888  


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHH
Q 011781          268 -WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF  346 (477)
Q Consensus       268 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  346 (477)
                       |+.+..+..+..++..+..++..++.++.+...++..                     ...++.+.++++.|.+++..+
T Consensus       170 ~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~---------------------~~~~~~v~~~~~~W~lsllY~  228 (417)
T COG2223         170 AWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQL---------------------PAQLKAVFSNKDTWLLSLLYF  228 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccc---------------------hhHHHHHhcCcchHHHHHHHH
Confidence             9999999888888766666655554433211111110                     012467888999999999999


Q ss_pred             HhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHh
Q 011781          347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMT  426 (477)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~  426 (477)
                      ....++.++..++|.|+++++|.++..+|.......+.+.+.+.++|+++||+|.+        +.+......+......
T Consensus       229 ~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~--------rv~~~~f~~~~~~~~~  300 (417)
T COG2223         229 ATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGR--------RVTLAVFVGMALAAAL  300 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccch--------hHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999987        3333322222222222


Q ss_pred             hhcccC----CCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          427 LSSIDL----GLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       427 l~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                      +.....    ..+.+..++.++.-..+.+.......-....+.|++.|.+.|+
T Consensus       301 l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~G~v~G~  353 (417)
T COG2223         301 LSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKETGAVTGI  353 (417)
T ss_pred             HHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhhhhHHHHH
Confidence            222211    1223333333333333355555556666666677788888876

>PRK10133 L-fucose transporter; Provisional

Probab=99.97  E-value=2.5e-27  Score=233.39  Aligned_cols=332  Identities=14%  Similarity=0.147  Sum_probs=238.4

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHH
Q 011781          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (477)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (477)
                      ..+..+.+.++...+.........|.+.+++|+++.+.|+..+.+.+++.+++++.|+++||+|||+++..+.++++++.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~  105 (438)
T PRK10133         26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGA  105 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            44556667777888888889999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHH--HhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhc-c-----
Q 011781          194 ALLP--LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-N-----  265 (477)
Q Consensus       194 ~~~~--~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~-~-----  265 (477)
                      +++.  ..+++++.++++|+++|++.+...+..+.++.+..++++|.+.+++.+....+|..+||.+++.+.. .     
T Consensus       106 ~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~  185 (438)
T PRK10133        106 ALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQS  185 (438)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence            7652  3467788999999999999999999999999998776767778999999999999999999876541 0     


Q ss_pred             --------------------cChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCC
Q 011781          266 --------------------LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLK  325 (477)
Q Consensus       266 --------------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (477)
                                          .+||++|+....+..+..++..+.+.++.+.++. .+. +                ....
T Consensus       186 ~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~-~~~-~----------------~~~~  247 (438)
T PRK10133        186 QDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH-SDA-K----------------QGSF  247 (438)
T ss_pred             hhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc-ccc-c----------------ccch
Confidence                                2466666544433332222222222221111000 000 0                0000


Q ss_pred             CCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHH-HHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCc
Q 011781          326 DVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYF-SEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (477)
Q Consensus       326 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~  404 (477)
                      ...+++++++|.++...+..++....+.+...|.+.|+ ++.+|+++..++..+....++.++++++.+++.||+++|  
T Consensus       248 ~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~--  325 (438)
T PRK10133        248 SASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH--  325 (438)
T ss_pred             hhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH--
Confidence            11246788999988877777777788887888999885 556899999999999999999999999999999999887  


Q ss_pred             ccceehhhhhHHhhhhhHHHHhhhcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          405 ETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       405 ~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                            +.......+. +..+++..... . .+....+.+.|++.+...+. ......+..|++.+++.|+
T Consensus       326 ------~~l~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~l~glg~~~i~P~-~~s~a~~~~~~~~~~as~l  386 (438)
T PRK10133        326 ------KVLAAYALIA-MALCLISAFAG-G-HVGLIALTLCSAFMSIQYPT-IFSLGIKNLGQDTKYGSSF  386 (438)
T ss_pred             ------HHHHHHHHHH-HHHHHHHHHcC-C-hHHHHHHHHHHHHHHHHHHH-HHHHHHcccchhhccchhH
Confidence                  3333333222 22222222211 2 23344566677776666544 4444455455666666654

>PRK15075 citrate-proton symporter; Provisional

Probab=99.97  E-value=2.2e-27  Score=234.74  Aligned_cols=334  Identities=13%  Similarity=0.086  Sum_probs=223.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHH-HHH-----HHHHHHhhhhhhhhhhhhcChhHHHHH
Q 011781          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQ-SSF-----FWGYALSQLPGGWLAKIFGGRKVLQTG  185 (477)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~-~~~-----~~~~~~~~~~~g~l~dr~g~r~~~~~~  185 (477)
                      |++....++++.++..++...++...|.+.++++.++.+.+.+. +..     .++..+++++.|+++||+|||+.++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~   92 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT   92 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence            44677788889999999999999999999999999887765443 222     222246889999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhchHH--------HHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHh
Q 011781          186 VLIWSLATALLPLLAGFMP--------GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLL  257 (477)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~  257 (477)
                      .++++++.++++ ++++++        .+++.|++.|++.+...+....++.|++|+++|++++++.....++|..+++.
T Consensus        93 ~~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~  171 (434)
T PRK15075         93 LSIMASGTLLIA-FVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAAL  171 (434)
T ss_pred             HHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHH
Confidence            999999888886 455544        46889999999999999999999999999999999999999998888888888


Q ss_pred             hhHHhh--------cccChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCH
Q 011781          258 LAPPII--------ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPW  329 (477)
Q Consensus       258 ~~~~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (477)
                      +++.+.        +.+|||++|++..+...+.    ++.++..++..       +....+          ++...+..+
T Consensus       172 ~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~----~~~~~~~~e~~-------~~~~~~----------~~~~~~~~~  230 (434)
T PRK15075        172 LGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFI----FLIRRSLEETE-------EFLARK----------HRPSMREIF  230 (434)
T ss_pred             HHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH----HHHHHhcCCCH-------HHHHhh----------hccccccHH
Confidence            877663        4679999998754432221    12221111100       000000          000001113


Q ss_pred             HHHhhcHHHHHHH-HHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccce
Q 011781          330 KAIFRSKAVWAMI-YAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTM  408 (477)
Q Consensus       330 ~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~  408 (477)
                      +...+++..+... +..++....+.....|.|.|+++.+|++..+.++......++.+++.++.|+++||+|+|      
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r------  304 (434)
T PRK15075        231 RSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRR------  304 (434)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------
Confidence            3445555555443 333444556677888999999988899999999888888999999999999999999876      


Q ss_pred             ehhhhhHHhhhhhHHHH-hh-hcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          409 VRKICQTIAFLSPAVCM-TL-SSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       409 ~r~~~~~~~~~~~~~~~-~l-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                        +.............+ .+ ...............++.+.+.+...........+..+++.||+.+|+
T Consensus       305 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~  371 (434)
T PRK15075        305 --PVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSL  371 (434)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeH
Confidence              333322222111111 11 111112211222223334444433332233334455667779998876

>TIGR00897 2A0118 polyol permease family

Probab=99.97  E-value=1.4e-27  Score=233.78  Aligned_cols=334  Identities=13%  Similarity=0.100  Sum_probs=235.2

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHH
Q 011781          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (477)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (477)
                      +.+....++.++..........+++.+.+++|.++.+.|++.+.+.++..+++++.|++.||+|||+++..+.++.+++.
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~   92 (402)
T TIGR00897        13 LNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGH   92 (402)
T ss_pred             chhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            34445555555666666666667777778999999999999999999999999999999999999999999988888776


Q ss_pred             HHHHH--h-hchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHH-HHHHhhhHHhhcccChh
Q 011781          194 ALLPL--L-AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGS-VAGLLLAPPIIENLGWE  269 (477)
Q Consensus       194 ~~~~~--~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~ig~~~~~~l~~~~g~~  269 (477)
                      +++..  . .++++.+++.|++.|++.+...+.....+.+.+|+++|++++|+.+...++|. +++|.+++.+.+.+||+
T Consensus        93 ~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~  172 (402)
T TIGR00897        93 AAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEM  172 (402)
T ss_pred             HHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchH
Confidence            54421  2 34677888999999999888888888889999999999999999999999996 68999999999888977


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhH
Q 011781          270 SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGS  349 (477)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  349 (477)
                      ..++......++..++.+++.+++++++.. +++++.       .+         ....++.++++|.+|...+..++..
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~  235 (402)
T TIGR00897       173 NTLWSALAFVLTGGVIALFSNKDIFTPQHM-QTREKF-------SE---------LGKAATILFTNPNVLLGGMVRIINT  235 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCcccc-cCCcch-------hh---------HHHHHHHHHcChhHHHHHHHHHHHH
Confidence            666654443333333333332222111110 000000       00         0012457889999998888888877


Q ss_pred             HHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhh-hhH--HHHh
Q 011781          350 WGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFL-SPA--VCMT  426 (477)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~-~~~--~~~~  426 (477)
                      ...+++.++.|.|+++ +|++..+.+.+.+...++..++.++.|+++||+++|        +.......+ ...  .++.
T Consensus       236 ~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~--------~~~~~~~~l~~~~~~~~l~  306 (402)
T TIGR00897       236 IGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWM--------NTVRWFGGVGCGIFTLALY  306 (402)
T ss_pred             HHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcch--------hHHHHHHHHHHHHHHHHHH
Confidence            8888889999999865 899999999998999999999999999999999876        222111111 111  1111


Q ss_pred             hhcc-cCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          427 LSSI-DLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       427 l~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                      .... ..++.....+..++.|.+.+... +. .....+..|+++|+++|+
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~-~~~~~~~~~~~~g~~~g~  354 (402)
T TIGR00897       307 YIPQHFGHSFAVALIIAIALGIFLAGYV-PL-AAVFPTLAPKHKGAAMSV  354 (402)
T ss_pred             HHHHccCCcHHHHHHHHHHHHHHHHHHH-HH-HHHHHhhCcchhHHHHHH
Confidence            1111 11222333445556666655442 33 345566788899999986

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.97  E-value=1.5e-27  Score=232.01  Aligned_cols=255  Identities=20%  Similarity=0.272  Sum_probs=212.0

Q ss_pred             hhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHH
Q 011781          128 MDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV  207 (477)
Q Consensus       128 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (477)
                      +...++.+.+|.+.+++|+++.+.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++. ..++++.++
T Consensus         5 ~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~   83 (377)
T PRK11102          5 LAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACA-LAQTIDQLI   83 (377)
T ss_pred             hHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHH-HHccHHHHH
Confidence            4566777889999999999999999999999999999999999999999999999999998888887775 567778899


Q ss_pred             HHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHHHH
Q 011781          208 LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFK  287 (477)
Q Consensus       208 ~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  287 (477)
                      +.|++.|++.+...+...+++.+++|+++|++++++.+....+|..++|.+++.+.+..+||+.|++.+++.++..+...
T Consensus        84 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  163 (377)
T PRK11102         84 YMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVF  163 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999989999999998887776654443


Q ss_pred             -HhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHh
Q 011781          288 -ILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEE  366 (477)
Q Consensus       288 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  366 (477)
                       +.+++++++++++ .+  .   ++    .         ..++++.+++|.++...+..++.......+..+.|.++.+.
T Consensus       164 ~~~~~~~~~~~~~~-~~--~---~~----~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (377)
T PRK11102        164 FFIPETLPKERRQP-FH--L---RT----T---------IRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIEL  224 (377)
T ss_pred             HhCCccCcccccCC-CC--h---HH----H---------HHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence             4444322111100 00  0   00    0         01245678888888777777776666777778888888888


Q ss_pred             hCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhc
Q 011781          367 LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       367 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~  402 (477)
                      +|+++.+.+.+.....++.+++.++.+++.||+|+|
T Consensus       225 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~  260 (377)
T PRK11102        225 NGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGAL  260 (377)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence            899999999999999999999999999999999887

>PRK11043 putative transporter; Provisional

Probab=99.96  E-value=3.4e-27  Score=231.37  Aligned_cols=325  Identities=12%  Similarity=0.131  Sum_probs=238.2

Q ss_pred             HHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHH
Q 011781          116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATAL  195 (477)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  195 (477)
                      +..+.+...+..+....+.+.+|.+.+++|.++.+.+++.+++.++..++++++|+++||+|||+.+..+.++..++.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~   87 (401)
T PRK11043          8 LVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLG   87 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHH
Confidence            33444445556667788888888899999999999999999999999999999999999999999999998888887777


Q ss_pred             HHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHH
Q 011781          196 LPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIF  275 (477)
Q Consensus       196 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~  275 (477)
                      .. ..++++.+++.|++.|++.+...+...+++.++++++++++..+.......+|..++|.+++++.+..|||+.|++.
T Consensus        88 ~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~  166 (401)
T PRK11043         88 ML-WVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATL  166 (401)
T ss_pred             HH-HhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            64 56777889999999999988888888899999999988999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHH
Q 011781          276 GLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC  355 (477)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  355 (477)
                      +++.++..+..+++++++++++    +++                    ++.++++++++|.++...+...+.......+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~----~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (401)
T PRK11043        167 FAITLLLILPTLRLKPSKKARK----QSQ--------------------DALTFKQLLKSKTYLGNVLIFAACSAAFFAW  222 (401)
T ss_pred             HHHHHHHHHHHHHcCCCCCccc----cch--------------------HHHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Confidence            8887776666555544332111    000                    0112467788888877666555555666677


Q ss_pred             hhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhH--HhhhhhHHHHhhh-cccC
Q 011781          356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQT--IAFLSPAVCMTLS-SIDL  432 (477)
Q Consensus       356 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~--~~~~~~~~~~~l~-~~~~  432 (477)
                      ..+.|.++++ +|++..+.++......++.+++.++.+++.||++++        +....  ....+....+.+. ....
T Consensus       223 ~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  293 (401)
T PRK11043        223 LTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGE--------QLLPWLLVLFAVSVIAIWLASLLSH  293 (401)
T ss_pred             HHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH--------HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            7888998865 799999999888888889999999999999999876        22111  1111111111111 1111


Q ss_pred             CCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          433 GLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       433 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                      .......+...+.+.+.+... +.......+..|+++|+++|+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~  335 (401)
T PRK11043        294 PSLVPLLIPFCVMAAANGAIY-PIVVAQALRPFPQATGKAAAL  335 (401)
T ss_pred             CcHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhCcccChHHHHH
Confidence            222223333444555544444 333334444457789998876

>TIGR00895 2A0115 benzoate transport

Probab=99.96  E-value=9.3e-28  Score=235.03  Aligned_cols=353  Identities=22%  Similarity=0.251  Sum_probs=243.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHH
Q 011781          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (477)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (477)
                      +++.+...++..+..........+..|.+.+++|.+..+.+++.++..++..++.++.|+++||+|||+.+..+.++.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~   94 (398)
T TIGR00895        15 QWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSV   94 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHH
Confidence            45556666666777777778888889999999999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHH
Q 011781          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (477)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~  271 (477)
                      +.++.. ..++++.+++.+++.|++.+...+...+++.|++|+++|++++++......+|..+++.+++.+.+..||++.
T Consensus        95 ~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~  173 (398)
T TIGR00895        95 FTLLCA-LATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSL  173 (398)
T ss_pred             HHHHHH-HccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceee
Confidence            877764 5677788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH-HHHHhccCCcCCCCCCCCcchhh-hh-hhhhhhh-H-HhhccCC----CCCCHHHHhhc---HHHH
Q 011781          272 FYIFGLLGIAWFS-GFKILQEGETSNGATLAPRSNYI-NM-KKSLSAS-L-EEMGESL----KDVPWKAIFRS---KAVW  339 (477)
Q Consensus       272 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~-~-~~~~~~~----~~~~~~~~~~~---~~~~  339 (477)
                      |++.+++.++..+ ...++++++....++..++.... +. ....... . +..+++.    .+..++.++++   +..+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (398)
T TIGR00895       174 FYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITV  253 (398)
T ss_pred             hhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHH
Confidence            9998765555443 34444443321111100000000 00 0000000 0 0000000    01112222222   3334


Q ss_pred             HHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhh
Q 011781          340 AMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFL  419 (477)
Q Consensus       340 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~  419 (477)
                      .+.+..++..........++|.+. +.+|.+..+.+.......++.+++.++.+++.||+++|        +.. ....+
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~-~~~~~  323 (398)
T TIGR00895       254 LLWLLYFMLLVGVYFLTNWLPKLM-VELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPR--------VTA-LLLLL  323 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH--------HHH-HHHHH
Confidence            444455555666667778888555 55899999999999999999999999999999999765        222 22222


Q ss_pred             hhHHHHhhhcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhhc
Q 011781          420 SPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYLE  476 (477)
Q Consensus       420 ~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl~  476 (477)
                      .......+.. ...+.....+..++.|.+.+...........+..+++++|+++|+.
T Consensus       324 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  379 (398)
T TIGR00895       324 GAVFAVLVGS-TLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWA  379 (398)
T ss_pred             HHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence            2222222222 1223334455566667666655544444444455667799998863

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.96  E-value=1e-27  Score=237.42  Aligned_cols=287  Identities=16%  Similarity=0.227  Sum_probs=213.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHH
Q 011781          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (477)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (477)
                      ++.+..+.+...........+....|.+.+ +|+++.+.+++.+++.++..+++++.|+++||+|||+.+..+.++.+++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~  104 (438)
T TIGR00712        26 WQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAV  104 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHH
Confidence            444555555666666666667777787775 5999999999999999999999999999999999999999998888887


Q ss_pred             HHHHHHh---hchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhc-ccCh
Q 011781          193 TALLPLL---AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-NLGW  268 (477)
Q Consensus       193 ~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~-~~g~  268 (477)
                      .+++...   .++++.+.+.|++.|++.+..++.....+.+++|+++|++++++.+....+|..+++.+.+...+ ..+|
T Consensus       105 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w  184 (438)
T TIGR00712       105 MLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDW  184 (438)
T ss_pred             HHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhh
Confidence            7665432   24556778899999999999999999999999999999999999999999999999888776444 5799


Q ss_pred             hHHHHHHHHHHHHHHHH-HHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHH
Q 011781          269 ESVFYIFGLLGIAWFSG-FKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFC  347 (477)
Q Consensus       269 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  347 (477)
                      |+.|++.+++.++..+. .++++++++....+..++.+. +..+...+. ++.+.+.++...+.+++++.+|...+..++
T Consensus       185 ~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (438)
T TIGR00712       185 HAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRN-DYPDDYNEK-AEQELTAKEIFMQYVLPNKLLWYIAIANVF  262 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhccc-ccccccccc-cccccchHHHHHHHHccCchHHHHHHHHHH
Confidence            99999988887775544 444444332211000000000 000000000 000000000111346789999998888777


Q ss_pred             hHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhc
Q 011781          348 GSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~  402 (477)
                      .....+++.+++|.|+++..|+++.++++......++.+++.+++|++.||++++
T Consensus       263 ~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~  317 (438)
T TIGR00712       263 VYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKG  317 (438)
T ss_pred             HHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            7777788889999999988899999999999999999999999999999999765

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.96  E-value=1.9e-27  Score=235.87  Aligned_cols=356  Identities=15%  Similarity=0.130  Sum_probs=244.1

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHH
Q 011781          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (477)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (477)
                      +|.++...++...........++.+.+.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++.++
T Consensus        17 ~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~   96 (455)
T TIGR00892        17 GWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASL   96 (455)
T ss_pred             chHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHH
Confidence            35555555555554455556677889999999999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHhhchHHHHHH-HHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhH
Q 011781          192 ATALLPLLAGFMPGLVL-SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES  270 (477)
Q Consensus       192 ~~~~~~~~~~~~~~~~~-~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~  270 (477)
                      +.++++ .+++++.+++ .|++.|++.+...+....++.++++ ++|++++++.+.+..+|..++|.+++.+.+.+|||+
T Consensus        97 ~~~~~~-~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~  174 (455)
T TIGR00892        97 GMILAS-FSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRG  174 (455)
T ss_pred             HHHHHH-HhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHH
Confidence            877764 5566666654 5689999988777777888889986 789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhh-hHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhH
Q 011781          271 VFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSA-SLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGS  349 (477)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  349 (477)
                      .|++.+++.++..+..+++.+.+..+.....+.++.........+ ..+...++..+....+++++|.++...+..++..
T Consensus       175 ~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  254 (455)
T TIGR00892       175 SFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMF  254 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHHHH
Confidence            999999887766555444433222110000000000000000000 0000000001111125788999998888877777


Q ss_pred             HHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhc
Q 011781          350 WGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSS  429 (477)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~  429 (477)
                      .+......++|.|+++ .|++..+++++.++.+++.++++++.+++.||...+.     .+........+..++..++..
T Consensus       255 ~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~-----~~~~~~~~~~~~~~l~~ll~~  328 (455)
T TIGR00892       255 LGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRP-----HVQYLFSFALLFNGLTHLLCA  328 (455)
T ss_pred             HHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCH-----HHHHHHHHHHHHHHHHHHHHH
Confidence            7777888899999976 7999999999999999999999999999999742210     012222222222222222222


Q ss_pred             ccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhhc
Q 011781          430 IDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYLE  476 (477)
Q Consensus       430 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl~  476 (477)
                      . ..+...+++..++.|++.+...........+.++++++|+++|+.
T Consensus       329 ~-~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~  374 (455)
T TIGR00892       329 L-AGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLV  374 (455)
T ss_pred             H-hchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHH
Confidence            2 223334445566667765555554455555556777889988763

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.96  E-value=9.6e-27  Score=228.11  Aligned_cols=262  Identities=17%  Similarity=0.209  Sum_probs=214.2

Q ss_pred             HHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHH
Q 011781          117 GTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL  196 (477)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  196 (477)
                      ..+.+..+...+....+.+.+|.+.+++|.+..+.++..+++.+++.++++++|+++||+|||+++..+.++++++.+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~   98 (413)
T PRK15403         19 MALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAAT   98 (413)
T ss_pred             HHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence            33445555666788888999999999999999999999999999999999999999999999999999999988888777


Q ss_pred             HHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHH
Q 011781          197 PLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFG  276 (477)
Q Consensus       197 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~  276 (477)
                      . .+++++.++++|+++|++.+...+....++.|+++++++++++++......+|..+||.+++.+.+..|||+.|++.+
T Consensus        99 ~-~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~  177 (413)
T PRK15403         99 L-FTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIA  177 (413)
T ss_pred             H-HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            4 677888999999999999887777778889999999999999999999999999999999999998899999999998


Q ss_pred             HHHHHHHHHH-HHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHH
Q 011781          277 LLGIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC  355 (477)
Q Consensus       277 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  355 (477)
                      ++.++..+.. +.+++++++++++ .+.      ..    .         ..+++.+++||.+|...+..++.......+
T Consensus       178 ~~~~i~~~~~~~~lp~~~~~~~~~-~~~------~~----~---------~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~  237 (413)
T PRK15403        178 VMGLIAFVGLLLAMPETVKRGAVP-FSA------KS----V---------LRDFRNVFRNRLFLTGAATLSLSYIPMMSW  237 (413)
T ss_pred             HHHHHHHHHHHHhCCCCccccCCC-CCh------HH----H---------HHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence            8877765543 3345433211100 000      00    0         012568899999999888888877777888


Q ss_pred             hhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHH
Q 011781          356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL  399 (477)
Q Consensus       356 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~  399 (477)
                      ..+.|.++++.+|+++.+.++.......+.+++..+.+++.+|.
T Consensus       238 ~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~  281 (413)
T PRK15403        238 VAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP  281 (413)
T ss_pred             HHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            88899999988899999999988888888888877777765443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.96  E-value=6.2e-27  Score=228.07  Aligned_cols=326  Identities=14%  Similarity=0.074  Sum_probs=232.0

Q ss_pred             HHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHH
Q 011781          118 TTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP  197 (477)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  197 (477)
                      .++++.++..++...+....+.+.++++.++.+.+++.+.+.+++.++.+++|+++||+|||++++.+.++.+++.+++.
T Consensus         7 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~   86 (393)
T PRK11195          7 AIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLML   86 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHH
Confidence            45666777777666677777777899999999999999999999999999999999999999999999998888776653


Q ss_pred             HhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHH
Q 011781          198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGL  277 (477)
Q Consensus       198 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~  277 (477)
                       ...+   .++.|+++|++.+...|+..+++.|++|+++|++++|+.+....+|.++||.++|++.+. .|+..+.+.+.
T Consensus        87 -~~~~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~  161 (393)
T PRK11195         87 -FGIH---PLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCAL  161 (393)
T ss_pred             -HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence             3333   277899999999999999999999999999999999999999999999999999999875 47777777666


Q ss_pred             HHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhh
Q 011781          278 LGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLS  357 (477)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  357 (477)
                      +.++..+..+.+++++.++++.+.+...      ...+..         ..++.++++|.+....+..++..........
T Consensus       162 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~---------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  226 (393)
T PRK11195        162 IYLLAALFNLFIPRLGARRPGQSWNPIA------LLRDFF---------HACRVLWRDKLGRFSLAGTTLFWGAGATLRF  226 (393)
T ss_pred             HHHHHHHHHhcCCCCcccccccCCCHHH------HHHHHH---------HHHHHHHhCchhHHHHHHHHHHHHHHHHHHH
Confidence            5555544455555543221111110000      000000         0135677888777665555555555566667


Q ss_pred             hhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcccCCCchH
Q 011781          358 WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHW  437 (477)
Q Consensus       358 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~  437 (477)
                      .+|.|+++.+|.++.+.|++.+...++.+++.++.+++.||.+++        +... .+...+...+ .... .++.++
T Consensus       227 ~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~--------~~~~-~g~~~~~~~~-~~~~-~~~~~~  295 (393)
T PRK11195        227 LVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVL--------RVLP-AGILMGLVVL-LMAL-QHSLLP  295 (393)
T ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--------chHH-HHHHHHHHHH-HHHH-HhHHHH
Confidence            778888888999999999999999999999999999999887654        2222 2222222222 2222 122223


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhHhhhccCccc--hhhhhhh
Q 011781          438 EIVGILTAGLALSSFALSGLYCTHQDISPEY--ASILLYL  475 (477)
Q Consensus       438 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~--~g~~~gl  475 (477)
                      ..+.+++.|.+.+....+ .....++.+|++  +|+++|+
T Consensus       296 ~~~~~~~~G~~~g~~~~~-~~~~~q~~~~~~~~~g~~~a~  334 (393)
T PRK11195        296 AYPLLILIGALGGFFVVP-MNALLQHRGHVLVGAGHSIAV  334 (393)
T ss_pred             HHHHHHHHHHhhhhhhhh-HHHHHHhhCcccccchhHHHH
Confidence            344455666665555544 445556667664  5877765

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.96  E-value=1.9e-26  Score=225.18  Aligned_cols=321  Identities=15%  Similarity=0.160  Sum_probs=239.9

Q ss_pred             HHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHH
Q 011781          116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATAL  195 (477)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  195 (477)
                      +..++...+..++......+..|.+++++|.+..+.|++.+.+.+++.+++++.|++.||+|||+++..+.++++++.++
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l   84 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL   84 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            44566677777788888899999999999999999999999999999999999999999999999999999998888876


Q ss_pred             HHHh--hchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcc--------
Q 011781          196 LPLL--AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN--------  265 (477)
Q Consensus       196 ~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~--------  265 (477)
                      +...  .++++.+++.|++.|+|.+...+..+.++.+..|+++|++.+++.+...++|..+||.+++.+...        
T Consensus        85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~  164 (410)
T TIGR00885        85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD  164 (410)
T ss_pred             HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence            5322  356788999999999999999999999999999999999999999999999999999999877522        


Q ss_pred             ------------------cChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCC
Q 011781          266 ------------------LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDV  327 (477)
Q Consensus       266 ------------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (477)
                                        .+||++|++.+++.++..+...+.+.++.++. + +++.                   ....
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~~-~-~~~~-------------------~~~~  223 (410)
T TIGR00885       165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNHS-D-AKQI-------------------SFSA  223 (410)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-c-cccc-------------------cchh
Confidence                              36999999988877766554443332221110 0 0000                   0011


Q ss_pred             CHHHHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHhh-CCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCccc
Q 011781          328 PWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEEL-SLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET  406 (477)
Q Consensus       328 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~  406 (477)
                      +.++++|+|.++...+..+++...+.+..++++.|.++.. +.+....+...+....+..+|+++++++.||+++|    
T Consensus       224 ~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~----  299 (410)
T TIGR00885       224 SLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAH----  299 (410)
T ss_pred             hHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH----
Confidence            2357789999999888888888888888999999997532 34444455566667788899999999999999776    


Q ss_pred             ceehhhhhHHhhhhhHHHHhhhcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccc
Q 011781          407 TMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEY  468 (477)
Q Consensus       407 ~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~  468 (477)
                          +.+..........+++.....   .......+.+.|++.+.+++.......+...++.
T Consensus       300 ----~~l~i~~~~~~~~~ll~~~~~---~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~  354 (410)
T TIGR00885       300 ----KVLMAYAIIGMALCLGSIFAG---GHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT  354 (410)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence                444444433333333333221   2334566777777777777544444444555444

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.96  E-value=4.6e-29  Score=231.36  Aligned_cols=352  Identities=16%  Similarity=0.159  Sum_probs=263.1

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHH
Q 011781          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (477)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (477)
                      .++.+.++++...++..+...+....+.+.+.+|++++..|++.+.+.+.+.+++|++|+++||++||+++.+|..++.+
T Consensus        31 ~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~  110 (493)
T KOG1330|consen   31 PTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTL  110 (493)
T ss_pred             chHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHH
Confidence            45678888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccC-hhH
Q 011781          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WES  270 (477)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g-~~~  270 (477)
                      +.+..+ +++.+|+++++|.+.|+|.+.+.|..+++++|.+|.++|++++++++.+..+|..+|.+.+..+.+..+ |||
T Consensus       111 Av~~~~-fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~  189 (493)
T KOG1330|consen  111 AVFASG-FSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRW  189 (493)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEE
Confidence            999886 568889999999999999999999999999999999999999999999999999999999999988766 999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHH
Q 011781          271 VFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSW  350 (477)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  350 (477)
                      .|+..+++.++..++.+++.+++++...++.+.+.....           +......+.+.+.+++.+....+......+
T Consensus       190 af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~-----------~~ts~~kDl~~l~~~~v~v~~sl~~~a~~f  258 (493)
T KOG1330|consen  190 AFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVK-----------PFTSVWKDLKVLAKIKVFVLSSLGIIAAQF  258 (493)
T ss_pred             EEEeehHHHHHHHHHHHhhccCcccccccccccCCcCCC-----------CccchHHHHHHHHccCceeeehHHHHHHHH
Confidence            999999999988777666655444332221111110000           000111234555666776666666666666


Q ss_pred             HHHHHhhhhhHHHHH---hhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehh--hhhHHhhhhhHHHH
Q 011781          351 GHYTCLSWLPTYFSE---ELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRK--ICQTIAFLSPAVCM  425 (477)
Q Consensus       351 ~~~~~~~~~~~~~~~---~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~--~~~~~~~~~~~~~~  425 (477)
                      ...++..|.|.++..   ..|++.....++.++...++.+|.+++|.++||+.+...+....+-  .....+....+.++
T Consensus       259 v~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L  338 (493)
T KOG1330|consen  259 VIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFL  338 (493)
T ss_pred             hccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHH
Confidence            666666676766543   3345555666677788888999999999999998765433222222  22223333333333


Q ss_pred             hhhcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhc-cCccchhhhhhh
Q 011781          426 TLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQD-ISPEYASILLYL  475 (477)
Q Consensus       426 ~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~p~~~g~~~gl  475 (477)
                      .+.........+..+.++++|............-+..+ ++|++|.+++++
T Consensus       339 ~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~  389 (493)
T KOG1330|consen  339 FLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYAL  389 (493)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHH
Confidence            33333334455666677777777776666555544444 678889888764

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.96  E-value=1.1e-27  Score=235.96  Aligned_cols=327  Identities=13%  Similarity=0.020  Sum_probs=235.3

Q ss_pred             HHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHH
Q 011781          119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL  198 (477)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  198 (477)
                      +.+..++..+........+|.+.++++.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+.+..
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~  101 (417)
T PRK10489         22 VFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLAL  101 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHH
Confidence            34445566677788888899999999999999999999999999999999999999999999998887776666554321


Q ss_pred             ----hhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHH
Q 011781          199 ----LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYI  274 (477)
Q Consensus       199 ----~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~  274 (477)
                          ..++++.+++.|++.|++.+...+...+++.++.|+++|+++.++.....++|.++||.+++.+.+..+|++.|++
T Consensus       102 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~  181 (417)
T PRK10489        102 NAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGL  181 (417)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHH
Confidence                1456678889999999998888899999999999999999999999999999999999999999988899999998


Q ss_pred             HHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHH
Q 011781          275 FGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYT  354 (477)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  354 (477)
                      .++..++..+..+.+++.+++++++    ++..   +.   .         ...++..+++|.++...+..++... ...
T Consensus       182 ~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~---~~---~---------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  241 (417)
T PRK10489        182 AAAGTFITLLPLLRLPALPPPPQPR----EHPL---RS---L---------LAGFRFLLASPVVGGIALLGGLLTM-ASA  241 (417)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCccc----ccch---HH---H---------HHHHHHHHcChHHHHHHHHHHHHHH-HHh
Confidence            8877776666665555433221100    0000   00   0         0124567788887766655544333 356


Q ss_pred             HhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcccCCC
Q 011781          355 CLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGL  434 (477)
Q Consensus       355 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~  434 (477)
                      ...++|.|+++.+|.++...|++.+...++.+++.++.+++.||.+++        +.+. .+.++.++.+.+.... ++
T Consensus       242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~--------~~l~-~~~~~~~~~~~~~~~~-~~  311 (417)
T PRK10489        242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPG--------LLML-LSTLGSFLAVGLFGLM-PM  311 (417)
T ss_pred             HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcc--------hHHH-HHHHHHHHHHHHHHcc-ch
Confidence            678899999887899999999999999999999999999999875332        2222 2223333333333222 22


Q ss_pred             chHHHHHHHHHHHHhhhhhhhhhhHhhhc-cCccchhhhhhhc
Q 011781          435 PHWEIVGILTAGLALSSFALSGLYCTHQD-ISPEYASILLYLE  476 (477)
Q Consensus       435 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~p~~~g~~~gl~  476 (477)
                      .....+..++.|.+.+ ...+......++ .++++||+++|+.
T Consensus       312 ~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~  353 (417)
T PRK10489        312 WILAVLCLALFGYLSA-ISSLLQYTLLQTQTPDEMLGRINGLW  353 (417)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence            2233344455555433 333444455555 4556699998863

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.96  E-value=8.1e-27  Score=235.27  Aligned_cols=290  Identities=18%  Similarity=0.203  Sum_probs=207.4

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHH
Q 011781          111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS  190 (477)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  190 (477)
                      ++++.+..+++..++..++.....+..|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   96 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFS   96 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            35567778888888888999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhH
Q 011781          191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES  270 (477)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~  270 (477)
                      ++.++.. ..++++.+++.|++.|++.+...+....++.+.+|+++|++++++......+|..++|.+++.+.+..+||+
T Consensus        97 ~~~~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~  175 (496)
T PRK03893         97 VGTLACG-FAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRA  175 (496)
T ss_pred             HHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Confidence            8887775 567788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhh----------------ccCCCCCCHHH---
Q 011781          271 VFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEM----------------GESLKDVPWKA---  331 (477)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~---  331 (477)
                      .|++.++..++..+.....+++++.+.+..... ......+......+..                -.......+..   
T Consensus       176 ~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (496)
T PRK03893        176 LFFIGILPIIFALWLRKNLPEAEDWKEKHAGKA-PVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVL  254 (496)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCchhhhhhccccc-cchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHH
Confidence            998754444333333333333221111100000 0000000000000000                00000000000   


Q ss_pred             ----------------HhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhc
Q 011781          332 ----------------IFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQF  395 (477)
Q Consensus       332 ----------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l  395 (477)
                                      ..+.+......+..+...........++|.|+++.+|++..+.+.+.+...++.+++.++.|++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l  334 (496)
T PRK03893        255 GLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFL  334 (496)
T ss_pred             HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            0000001111111111111112355789999987789999999999999999999999999999


Q ss_pred             hhHHHhc
Q 011781          396 ADNLIAT  402 (477)
Q Consensus       396 ~dr~g~~  402 (477)
                      .||+++|
T Consensus       335 ~dr~g~~  341 (496)
T PRK03893        335 GDWLGTR  341 (496)
T ss_pred             HHHhcch
Confidence            9999876

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.96  E-value=1.8e-26  Score=224.23  Aligned_cols=319  Identities=14%  Similarity=0.000  Sum_probs=225.1

Q ss_pred             HHHHHHHhhhhHHHHhHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHH-HHHHHHHHHHHHHH
Q 011781          121 LAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQT-GVLIWSLATALLPL  198 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~-~~~~~~~~~~~~~~  198 (477)
                      +..++..+......+.+|. +.+++|.|..++|++.+++.+...+.+++.|+++||+|||+.++. +.++..++.+++ .
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~-~   82 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLF-A   82 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHH-H
Confidence            4466777788888888887 567899999999999999999999999999999999999887655 444444455555 4


Q ss_pred             hhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhH--HHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHH
Q 011781          199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRA--VSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFG  276 (477)
Q Consensus       199 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~  276 (477)
                      .+++++.+++.|++.|.+.+...|...+++.++.++++|++.  .+......++|.++||.+++.+.+..|||+.|++.+
T Consensus        83 ~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~  162 (375)
T TIGR00899        83 WNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAA  162 (375)
T ss_pred             hcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHH
Confidence            567778888889999888888888888888898877766654  678888889999999999999999999999999998


Q ss_pred             HHHHHHHHHHHH-hccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHH
Q 011781          277 LLGIAWFSGFKI-LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC  355 (477)
Q Consensus       277 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  355 (477)
                      ++.++..+..++ +++.++.+.++   . +                    ..+.+..++++.++...+..++........
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~---~-~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (375)
T TIGR00899       163 LAFVLCGVLVWLFLPSYPRGAPGA---L-T--------------------RLEVRGLLASRDTRLLFVACTLMWGCNILY  218 (375)
T ss_pred             HHHHHHHHHHHHhCCCcccCcccc---c-C--------------------cchhhhhhcCcchHHHHHHHHHHHHHHHHH
Confidence            877766555444 44433211100   0 0                    011234566777776666555555555566


Q ss_pred             hhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcccCCCc
Q 011781          356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLP  435 (477)
Q Consensus       356 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~  435 (477)
                      ..++|.|+++.+|.++.+.+.+.....+..+++.++.|++.||+++|        +.... ..+...+........ ++.
T Consensus       219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~--------~~~~~-~~~~~~~~~~~~~~~-~~~  288 (375)
T TIGR00899       219 IINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKR--------RLMLL-AALAGVAFYTGLAAD-NSL  288 (375)
T ss_pred             HhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch--------hHHHH-HHHHHHHHHHHHHHH-HHH
Confidence            77889999888899999999888887778888899999999999876        33222 222222222222221 122


Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          436 HWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       436 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                      ....+...+.+.+.+. ..+......++..|+++++++|+
T Consensus       289 ~~~~~~~~~~g~~~g~-~~~~~~~~~~~~~~~~~~~~~~~  327 (375)
T TIGR00899       289 WALLMLQLLNAIFIGI-LAGIGMLYFQDLMPGRAGAATTL  327 (375)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcchhhHHHHH
Confidence            2233333344444443 33455566677778888888775

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.96  E-value=1.2e-26  Score=227.38  Aligned_cols=320  Identities=17%  Similarity=0.144  Sum_probs=224.6

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHH
Q 011781          114 KLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (477)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (477)
                      +.+..+.+..++..++..+..+.+|. +.+++|.|+.++|++.+++.+++.+++++.|+++||+|||+++..+.++.+++
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~   94 (399)
T PRK05122         15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALS   94 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHH
Confidence            55666777888888888889989887 57889999999999999999999999999999999999999999998887776


Q ss_pred             HHHHHHh--h-----chHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcc
Q 011781          193 TALLPLL--A-----GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN  265 (477)
Q Consensus       193 ~~~~~~~--~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~  265 (477)
                      .+++...  .     .+++.+++.|++.|++.+...+....++.+++|+++|++++++......+|.++|+.+++.+.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~  174 (399)
T PRK05122         95 GLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW  174 (399)
T ss_pred             HHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc
Confidence            5544221  1     14567899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHH
Q 011781          266 LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAH  345 (477)
Q Consensus       266 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  345 (477)
                      .||++.+++.+++.++..+...   +.++.+.+ ..++                       .++++.++  ..+......
T Consensus       175 ~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~-----------------------~~~~~~~~--~~~~~~~~~  225 (399)
T PRK05122        175 GGLAGLGLLIMLLALLGLLLAR---PRPAVPPV-KGER-----------------------LPFRRVLG--RVWPYGMGL  225 (399)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHh---cCCCCCCC-Cccc-----------------------hhHHHHHH--HHHHHHHHH
Confidence            9999988876665544333221   11111110 0000                       01122222  122222233


Q ss_pred             HHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHH
Q 011781          346 FCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCM  425 (477)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~  425 (477)
                      .+..+.+.....+++.|+.+ .|.  ...+.......++.++++++.+++.||+++|        +..... ....++..
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~--------~~~~~~-~~~~~~~~  293 (399)
T PRK05122        226 ALASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRLGGL--------RVAIVS-LLVEILGL  293 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccH--------HHHHHH-HHHHHHHH
Confidence            33444556667788888865 465  3456667788888999999999999999866        333322 22222222


Q ss_pred             hhhcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          426 TLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       426 ~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                      .+... .++....++..++.|++.+...........+..+++++|+++|+
T Consensus       294 ~~~~~-~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  342 (399)
T PRK05122        294 LLLWL-APSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGA  342 (399)
T ss_pred             HHHHH-hccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            22222 22333444455666666655554444445556777889999886

>PRK09952 shikimate transporter; Provisional

Probab=99.96  E-value=3.4e-26  Score=226.15  Aligned_cols=273  Identities=18%  Similarity=0.142  Sum_probs=197.8

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhHHHHhHHh-hhhhh--CCCcchhhHHH-----HHHHHHHHHhhhhhhhhhhhhcChhHH
Q 011781          111 QRYKLIGTTSLAFVICNMDKVNLSVAIIP-MSHRF--GWNSSVAGLVQ-----SSFFWGYALSQLPGGWLAKIFGGRKVL  182 (477)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--g~s~~~~g~~~-----~~~~~~~~~~~~~~g~l~dr~g~r~~~  182 (477)
                      ++++.+....+..++..++...++...|. +.+++  +.++. .+++.     ++..++..+++++.|+++||+|||+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l   97 (438)
T PRK09952         19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence            34567777778888899999998888775 45555  66666 45543     244556678899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhchHH--------HHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHH
Q 011781          183 QTGVLIWSLATALLPLLAGFMP--------GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVA  254 (477)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i  254 (477)
                      ..+.++++++.++++ +++++.        .++++|+++|++.+..++....++.|++|+++|++..+....+..+|.++
T Consensus        98 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l  176 (438)
T PRK09952         98 MLTVWMMGIATALIG-LLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLL  176 (438)
T ss_pred             HHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence            999999999988875 555544        58889999999999999999999999999999999999999999999999


Q ss_pred             HHhhhHHhh--------cccChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCC
Q 011781          255 GLLLAPPII--------ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKD  326 (477)
Q Consensus       255 g~~~~~~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (477)
                      ++.+...+.        +.+|||+.|++.+++.++........+|+++..+.    +.+           .+  +.+.+.
T Consensus       177 ~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~----~~~-----------~~--~~~~~~  239 (438)
T PRK09952        177 STGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQ----QHE-----------QA--AAKKRI  239 (438)
T ss_pred             HHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHH----Hhh-----------cc--cccccC
Confidence            887777654        25799999998877654433222222222110000    000           00  000011


Q ss_pred             CCHHHHhhcHHHHHHHH-HHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhc
Q 011781          327 VPWKAIFRSKAVWAMIY-AHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       327 ~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~  402 (477)
                      ...+.++++|+.|...+ ..++.....+....+.|.|+++.+|++......+....++..+++.++.|+++||+|+|
T Consensus       240 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr  316 (438)
T PRK09952        240 PVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRR  316 (438)
T ss_pred             CHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence            11234667777766544 34455566777888999999888898887665566666777888899999999999877

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.96  E-value=6.4e-26  Score=221.60  Aligned_cols=266  Identities=17%  Similarity=0.168  Sum_probs=215.4

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHH
Q 011781          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (477)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (477)
                      |.+.......+....+...+.+.+|.+.+++|.+..+.++..+++.++..+++++.|+++||+|||+.+..+.++.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~   82 (392)
T PRK10473          3 RFLLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIAS   82 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHH
Confidence            44455556666677777788889999999999999999999999999999999999999999999999999998888888


Q ss_pred             HHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHH
Q 011781          194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY  273 (477)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~  273 (477)
                      +++. ..++++.+++.|++.|++.+...+...+++.+.+|+++|++++++.+....+|..++|.+++.+.+..+|++.|+
T Consensus        83 ~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~  161 (392)
T PRK10473         83 LLCS-LAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFY  161 (392)
T ss_pred             HHHH-HhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHH
Confidence            7774 567778889999999999999999999999999999999999999999999999999999999888899999999


Q ss_pred             HHHHHHHHHHHHH-HHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHH
Q 011781          274 IFGLLGIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH  352 (477)
Q Consensus       274 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  352 (477)
                      +.+++.++..+.. ..++++++++++   ++...                   ....++.++++.++...+...+.....
T Consensus       162 ~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (392)
T PRK10473        162 TMAAMGILVLLLSLFILKETRPARAP---AASSK-------------------PRENSESLLNRFFLSRLVITTLSVTVI  219 (392)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCcccC---Cccch-------------------HHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            9888777665544 334443222110   00000                   001245677887776665555555555


Q ss_pred             HHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhc
Q 011781          353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       353 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~  402 (477)
                      ..+..+.|.++++.+|++..+.+.+.+..+++.+++.++.+++.||+|+|
T Consensus       220 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~  269 (392)
T PRK10473        220 LTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPR  269 (392)
T ss_pred             HHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            56667778888888899999999999999999999999999999999876

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.96  E-value=9.9e-27  Score=233.47  Aligned_cols=351  Identities=19%  Similarity=0.200  Sum_probs=229.7

Q ss_pred             HHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCC--------cchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHH
Q 011781          116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWN--------SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVL  187 (477)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s--------~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~  187 (477)
                      ...+.++.+...++...+....+.+..+++.+        ..+.+++.+++.++..++++++|+++||+|||+++.++.+
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~  109 (481)
T TIGR00879        30 SLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIAL  109 (481)
T ss_pred             HHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHH
Confidence            33444455566677788888888888888777        8999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhc--hHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhh---HHh
Q 011781          188 IWSLATALLPLLAG--FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA---PPI  262 (477)
Q Consensus       188 ~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~---~~l  262 (477)
                      +..++.++......  +++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|.++++.++   +..
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~  189 (481)
T TIGR00879       110 LFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSL  189 (481)
T ss_pred             HHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence            88888777643332  3457899999999999999999999999999999999999999999999999999999   766


Q ss_pred             hcccChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcc--hhhhh-----------hh--hhhhhHHhhccCCCCC
Q 011781          263 IENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRS--NYINM-----------KK--SLSASLEEMGESLKDV  327 (477)
Q Consensus       263 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----------~~--~~~~~~~~~~~~~~~~  327 (477)
                      .+..+||+.|++.++..++..+..+++++++.....+...++  +....           .+  ......+..+......
T Consensus       190 ~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (481)
T TIGR00879       190 NNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQP  269 (481)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccc
Confidence            677899999999777666666666666654321100000000  00000           00  0000000000001111


Q ss_pred             CHHHHhh------cHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHh
Q 011781          328 PWKAIFR------SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIA  401 (477)
Q Consensus       328 ~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~  401 (477)
                      .+...++      .+.++...+..+...........+.|.+++ ..|++....+.......++.+++.++.+++.||+++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~  348 (481)
T TIGR00879       270 SWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFE-NAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGR  348 (481)
T ss_pred             cHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            1333333      223333333334333344455666777775 479999888889899999999999999999999987


Q ss_pred             cCcccceehhhhhHHhhhhhHHHHhhhc---ccCCC------chHHHHHHHHHHHHhhhhhhhhhhHhhhcc-Cccchhh
Q 011781          402 TGVETTMVRKICQTIAFLSPAVCMTLSS---IDLGL------PHWEIVGILTAGLALSSFALSGLYCTHQDI-SPEYASI  471 (477)
Q Consensus       402 ~~~~~~~~r~~~~~~~~~~~~~~~~l~~---~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~p~~~g~  471 (477)
                      |        +..... ++..++++.+..   .....      ....+....+++.+++....+.......+. +++++|+
T Consensus       349 ~--------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  419 (481)
T TIGR00879       349 R--------PLLLIG-AAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPK  419 (481)
T ss_pred             h--------HHHHHH-HHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHH
Confidence            6        333222 222222222221   11111      222233333334444434445555554554 5567999


Q ss_pred             hhhhc
Q 011781          472 LLYLE  476 (477)
Q Consensus       472 ~~gl~  476 (477)
                      ++|+.
T Consensus       420 ~~~~~  424 (481)
T TIGR00879       420 GISIA  424 (481)
T ss_pred             HHHHH
Confidence            88864

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK12382 putative transporter; Provisional

Probab=99.96  E-value=3.1e-26  Score=223.86  Aligned_cols=320  Identities=14%  Similarity=0.105  Sum_probs=214.8

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHhHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHH
Q 011781          115 LIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (477)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (477)
                      .+..+.++.++......+..+.+|. +.+++|.|..++|++.+++.+++.++++++|+++||+|||+++..+.++..++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~   95 (392)
T PRK12382         16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAG   95 (392)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHH
Confidence            3444555666677777788888886 578999999999999999999999999999999999999999998877665544


Q ss_pred             HHHH---H----hhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhccc
Q 011781          194 ALLP---L----LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL  266 (477)
Q Consensus       194 ~~~~---~----~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~  266 (477)
                      +...   .    ..++++.+++.|++.|++.+...+...+++.+++|+++|++++++.+.+..+|..+||.+++++.+..
T Consensus        96 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~  175 (392)
T PRK12382         96 LAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHF  175 (392)
T ss_pred             HHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3221   1    12466789999999999999888999999999999999999999999999999999999999999989


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHH
Q 011781          267 GWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF  346 (477)
Q Consensus       267 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  346 (477)
                      ||++.+.+..++.++........++.+   .++  +++.                      ++++..+  .+|...+..+
T Consensus       176 g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~----------------------~~~~~~~--~~~~~~~~~~  226 (392)
T PRK12382        176 GFAALALTTMVLPLLAWAFNGTVRKVP---AHA--GERP----------------------SLWSVVG--LIWKPGLGLA  226 (392)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhccCCC---CCc--ccCc----------------------hHHHHHH--HHHHhHHHHH
Confidence            999877765544333322221111111   000  0000                      0111111  1222222222


Q ss_pred             HhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHh
Q 011781          347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMT  426 (477)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~  426 (477)
                      +..........+.|.|+++ .|++.  .+.......++.++++++.|++.||+|+|        +...... ....+...
T Consensus       227 l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~--------~~~~~~~-~~~~~~~~  294 (392)
T PRK12382        227 LQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGV--------KVAIVSL-LVETVGLL  294 (392)
T ss_pred             HHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------eehHHHH-HHHHHHHH
Confidence            3334455667788888865 46543  45666677888889999999999999876        2332222 22222222


Q ss_pred             hhcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhhc
Q 011781          427 LSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYLE  476 (477)
Q Consensus       427 l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl~  476 (477)
                      +.... ++..+..+..++.|.+.+...........+..+++++|+++|+.
T Consensus       295 ~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  343 (392)
T PRK12382        295 LLWLA-PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGY  343 (392)
T ss_pred             HHHHc-ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            22222 23333444455556555444443344455667788899998863

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.96  E-value=5.8e-26  Score=221.76  Aligned_cols=322  Identities=14%  Similarity=0.082  Sum_probs=223.4

Q ss_pred             HHHHHHHHHhhhhHHHHhHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHH
Q 011781          119 TSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP  197 (477)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  197 (477)
                      +....++.........++++. +.+++|.|..++|++.+...++..+.+++.|+++||+|||+++..+.++.+++.+++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~   94 (400)
T PRK11646         15 LLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMA   94 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            334555566666666666655 6788999999999999999999999999999999999999999999999988888774


Q ss_pred             HhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHH
Q 011781          198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGL  277 (477)
Q Consensus       198 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~  277 (477)
                       ..++++.+++.|++.|++.+...+...+++.+++|+++|++++|+......+|..+||.+++++. .+||++.|++.++
T Consensus        95 -~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~  172 (400)
T PRK11646         95 -IAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAV  172 (400)
T ss_pred             -HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHH
Confidence             56777889999999999998888999999999999999999999999999999999999999998 7799999999887


Q ss_pred             HHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhh
Q 011781          278 LGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLS  357 (477)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  357 (477)
                      +.++..++..+..++++. .+   .+++                   ...++++++++|.++...+..+...........
T Consensus       173 ~~~~~~i~~~~~~~~~~~-~~---~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (400)
T PRK11646        173 LFVLAAAFNAWLLPAYKL-ST---VRTP-------------------VREGMTRVLRDKRFVTYVLTLTGYYMLAVQVML  229 (400)
T ss_pred             HHHHHHHHHHHhCCcccc-cc---cchh-------------------hHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHH
Confidence            766654443333221110 00   0000                   011246778888887666555554444444567


Q ss_pred             hhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhH-HHhcCcccceehhhhhHHhhhhhHHHHhhhcccCCCch
Q 011781          358 WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADN-LIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPH  436 (477)
Q Consensus       358 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~  436 (477)
                      ++|.|+++.. .++.+.+++.+..+++...+....+++.|| ++.+        +... .+....++...+.... ++..
T Consensus       230 ~~p~~~~~~~-~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~--------~~~~-~~~~~~~~~~~~l~~~-~~~~  298 (400)
T PRK11646        230 MLPIMVNDIA-GSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLE--------HRLM-AGLLIMSLSMFPIGMV-SNLQ  298 (400)
T ss_pred             hhhhhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh--------HHHH-HHHHHHHHHHHHHHHh-hhHH
Confidence            8899998754 477788888888777776666555666654 3322        2222 2222222222222222 2223


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhhc
Q 011781          437 WEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYLE  476 (477)
Q Consensus       437 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl~  476 (477)
                      +..+...+.+.+.+...+.......+..+++++|+++|+.
T Consensus       299 ~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~  338 (400)
T PRK11646        299 QLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFS  338 (400)
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHH
Confidence            3333334445544433333333344456677899998863

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.96  E-value=3.9e-26  Score=222.10  Aligned_cols=260  Identities=15%  Similarity=0.104  Sum_probs=204.6

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHH
Q 011781          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (477)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (477)
                      +.+..++++.++.........+.+|.+.+++|.|..++|++.+.+.++..+++++.|+++||+|||+.+..+.++.+++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~   85 (381)
T PRK03633          6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGC   85 (381)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44666777788888999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHH
Q 011781          194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY  273 (477)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~  273 (477)
                      ++++ .+++++.+++.|++.|++.+...+.....+.+..++++|+++++++..+..+|..+||.+++.+.+...+...+ 
T Consensus        86 ~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~-  163 (381)
T PRK03633         86 AGLG-LMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPW-  163 (381)
T ss_pred             HHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH-
Confidence            7774 56788999999999999999988888888888898899999999999999999999999999987654333332 


Q ss_pred             HHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHH
Q 011781          274 IFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHY  353 (477)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  353 (477)
                      ..+.+....... .+.+.+++..+ +   +                     +..++++.+++|.++......+.....+.
T Consensus       164 ~~~~~~~~~~~~-~~~~~~~~~~~-~---~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (381)
T PRK03633        164 VTGLVLAAILPL-LFTRILNQQAE-N---H---------------------DSTSIWPMLKLRQARLGVNGCIISGIVLG  217 (381)
T ss_pred             HHHHHHHHHHHH-HHhcccCCCCC-C---C---------------------CCCCHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            222222221111 12121111100 0   0                     01124567788877765555555555566


Q ss_pred             HHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhc
Q 011781          354 TCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       354 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~  402 (477)
                      ....++|.|+++ .|.+....+.+.+...++.++++++.|++.||+++|
T Consensus       218 ~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~  265 (381)
T PRK03633        218 SLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRL  265 (381)
T ss_pred             HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcH
Confidence            677889999976 699999999999999999999999999999999876

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.96  E-value=2.3e-26  Score=231.02  Aligned_cols=353  Identities=16%  Similarity=0.176  Sum_probs=226.3

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhh--------CCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHH
Q 011781          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRF--------GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQ  183 (477)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~  183 (477)
                      ..+..+...++.+..+++...+++..+.+.+++        +.+..+.+++.+++.++..++++++|+++||+|||+++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~   89 (479)
T PRK10077         10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK   89 (479)
T ss_pred             HHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            445666667778888888888888888888777        889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh-----------hchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHH
Q 011781          184 TGVLIWSLATALLPLL-----------AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGS  252 (477)
Q Consensus       184 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~  252 (477)
                      ++.+++.++.+..+..           .+.++.+++.|++.|++.+...+...++++|++|+++|++++++.+.+..+|.
T Consensus        90 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~  169 (479)
T PRK10077         90 IAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQ  169 (479)
T ss_pred             HHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHH
Confidence            9988888777665421           12245678999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhHHhh--------cccChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchh--hhhh-------hhhhh
Q 011781          253 VAGLLLAPPII--------ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNY--INMK-------KSLSA  315 (477)
Q Consensus       253 ~ig~~~~~~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~  315 (477)
                      ++++.+++.+.        +..|||+.|++.++..++..+..++++|+++....+.+.++..  .+..       +...+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (479)
T PRK10077        170 LVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQE  249 (479)
T ss_pred             HHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHH
Confidence            99988776553        3569999999988877777666666666543211110000000  0000       00000


Q ss_pred             hHHhhccCCCCCCHHHHhhcHHHHH---HHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhh
Q 011781          316 SLEEMGESLKDVPWKAIFRSKAVWA---MIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIA  392 (477)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~  392 (477)
                      ..+..+++..  ..+..+.-.....   .....+..........++.|.+..+ .|.+....++.....++..+++.++.
T Consensus       250 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-~g~~~~~~~~~~~~~~~~~~i~~~~~  326 (479)
T PRK10077        250 IKHSLDHGRK--TGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT-LGASTDIALLQTIIVGVINLTFTVLA  326 (479)
T ss_pred             HHHHHHHhhh--hhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            0000000000  0000110000000   0111111122233344566777654 78887777777778888999999999


Q ss_pred             hhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhh-cc--cCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhcc-Cccc
Q 011781          393 AQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLS-SI--DLGLPHWEIVGILTAGLALSSFALSGLYCTHQDI-SPEY  468 (477)
Q Consensus       393 g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~-~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~p~~  468 (477)
                      ++++||+|+|        +.... +.++.+++.... ..  ......+....+++.+.+++....+.......+. ++++
T Consensus       327 g~l~dr~g~r--------~~~i~-~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  397 (479)
T PRK10077        327 IMTVDKFGRK--------PLQII-GALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI  397 (479)
T ss_pred             HHHHHHhcCh--------HHHHH-hHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH
Confidence            9999999876        33332 222323222221 11  1111223333344444444433334555555554 5567


Q ss_pred             hhhhhhhc
Q 011781          469 ASILLYLE  476 (477)
Q Consensus       469 ~g~~~gl~  476 (477)
                      ||+++|+.
T Consensus       398 r~~~~g~~  405 (479)
T PRK10077        398 RGKALAIA  405 (479)
T ss_pred             HHHHHHHH
Confidence            99999863

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.96  E-value=2.6e-27  Score=230.95  Aligned_cols=284  Identities=19%  Similarity=0.295  Sum_probs=229.0

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHh-HHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHH
Q 011781          115 LIGTTSLAFVICNMDKVNLSVA-IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (477)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (477)
                      ++..++..++........++.. +..+.++.+....+.+.+.+++.++++++.++++.+.||++..+.+....+++++..
T Consensus        46 i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~  125 (495)
T KOG2533|consen   46 ILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFG  125 (495)
T ss_pred             HHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHH
Confidence            3444455555666665555444 444778999999999999999999999999999999999998888888888877776


Q ss_pred             HHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhh------cccC
Q 011781          194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII------ENLG  267 (477)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~------~~~g  267 (477)
                      ++.. ..++++.+++.|++.|+..+..+|....+++.++.+++|+..+|++.+..++|.++|++++..+.      ...|
T Consensus       126 ~~~~-~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~g  204 (495)
T KOG2533|consen  126 FLTA-AVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAG  204 (495)
T ss_pred             HHHH-HHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCC
Confidence            6654 47788999999999999999999999999999999999999999999999999999999999864      3468


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHH
Q 011781          268 WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFC  347 (477)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  347 (477)
                      |||.|++.|++.++..++.++..++.+.+..-.+++++....++..++..+..+++.+...+++.+++|.+|.+++..++
T Consensus       205 W~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~  284 (495)
T KOG2533|consen  205 WRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFF  284 (495)
T ss_pred             ceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHH
Confidence            99999999999988776666554444443333333332222111111122222222556678899999999999999999


Q ss_pred             hHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHH
Q 011781          348 GSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL  399 (477)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~  399 (477)
                      .....+++.+|+|.|+.+..|++..+++.+.....++++++.+++|.++||+
T Consensus       285 ~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~  336 (495)
T KOG2533|consen  285 LKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRL  336 (495)
T ss_pred             HhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHH
Confidence            9999999999999999885679999999999999999999999999999995

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.95  E-value=1.1e-25  Score=216.27  Aligned_cols=303  Identities=30%  Similarity=0.442  Sum_probs=247.8

Q ss_pred             HHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHH
Q 011781          118 TTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP  197 (477)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  197 (477)
                      .+....+....+.....+..|.+.+++|.+..+.+++.+...++..+++++.|+++||+|||+.+..+..+..++.++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~   82 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA   82 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence            34556667778888889999999999999999999999999999999999999999999999999999999888887774


Q ss_pred             HhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHH
Q 011781          198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGL  277 (477)
Q Consensus       198 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~  277 (477)
                       ..++++.+++.|++.|++.+...+...+++.|++|+++|++.+++.+....+|..++|.+++.+.+..+|++.+++.++
T Consensus        83 -~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (352)
T cd06174          83 -FASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAI  161 (352)
T ss_pred             -HhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence             5577889999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhh
Q 011781          278 LGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLS  357 (477)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  357 (477)
                      +.++..+...+++                                             |.++...+..++..........
T Consensus       162 ~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~  196 (352)
T cd06174         162 LGLLLALLLLFLL---------------------------------------------RLLLLLALAFFLLSFGYYGLLT  196 (352)
T ss_pred             HHHHHHHHHHHHH---------------------------------------------HHHHHHHHHHHHHHhHHHHHHH
Confidence            8777766655543                                             4566677777888888889999


Q ss_pred             hhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehh-hhhHHhhhhhHHHHhhhcccCCCch
Q 011781          358 WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRK-ICQTIAFLSPAVCMTLSSIDLGLPH  436 (477)
Q Consensus       358 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~-~~~~~~~~~~~~~~~l~~~~~~~~~  436 (477)
                      +.|.+..+.+|.+..+.+...+...++..++.++.+++.||+++|        + ... .+.....++..+.... ++..
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~i~~~~~~~~-~~~~  266 (352)
T cd06174         197 YLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRR--------RLLLL-IGLLLAALGLLLLALA-PSLA  266 (352)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hHHHH-HHHHHHHHHHHHHHHh-ccHH
Confidence            999999887799999999999999999999999999999999887        3 332 3333333333333222 2234


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhhc
Q 011781          437 WEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYLE  476 (477)
Q Consensus       437 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl~  476 (477)
                      ...+..++.+.+.+...........+..+++++|+++|+.
T Consensus       267 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (352)
T cd06174         267 LLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLF  306 (352)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHH
Confidence            4455566666666655544444455555668899998863

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00896 CynX cyanate transporter

Probab=99.95  E-value=3.7e-26  Score=220.21  Aligned_cols=310  Identities=17%  Similarity=0.180  Sum_probs=224.1

Q ss_pred             hhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHH
Q 011781          128 MDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV  207 (477)
Q Consensus       128 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (477)
                      .....+++.+|.+.+++|++..+.|++.+++.+++.++.++.|+++||+|+|+++.++.++..++.+..  ..++.+.++
T Consensus        14 ~~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~--~~~~~~~l~   91 (355)
T TIGR00896        14 PALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR--SAPGTALLF   91 (355)
T ss_pred             CccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH--HhccHHHHH
Confidence            344567888999999999999999999999999999999999999999999999999988877766555  446668888


Q ss_pred             HHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhccc--ChhHHHHHHHHHHHHHHHH
Q 011781          208 LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL--GWESVFYIFGLLGIAWFSG  285 (477)
Q Consensus       208 ~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~--g~~~~~~~~~~~~~~~~~~  285 (477)
                      +.|++.|++.+...+.....+.++++ ++|++++++.+....+|..+++.+++.+.+..  +||+.|.+.+++.++..+ 
T Consensus        92 ~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~-  169 (355)
T TIGR00896        92 AGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL-  169 (355)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH-
Confidence            99999999998888888888888886 68999999999999999999999999888765  399998877665444322 


Q ss_pred             HHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHHHH
Q 011781          286 FKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSE  365 (477)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  365 (477)
                       .++++.+++++++..                      ......++++|+|.+|...+..++....+.....++|.|+++
T Consensus       170 -~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~  226 (355)
T TIGR00896       170 -AWIPQVRRRVAANQT----------------------TTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS  226 (355)
T ss_pred             -HHhhhhccccCCCCC----------------------CCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             223332211110000                      001123567888998887777777777788888999999976


Q ss_pred             hhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcccCCCchHHHHHHHHH
Q 011781          366 ELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTA  445 (477)
Q Consensus       366 ~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  445 (477)
                       .|++..+.+.+.+...++.++++++.|++.||+++|       |+. ...+....+++............+  ....+.
T Consensus       227 -~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~  295 (355)
T TIGR00896       227 -HGASAATAGSLLALMQLAQAASALLIPALARRVKDQ-------RGI-VAVLAVLQLVGLCGLLFAPMHGLW--AWALVL  295 (355)
T ss_pred             -cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccc-------hHH-HHHHHHHHHHHHHHHHHhhhhHHH--HHHHHH
Confidence             699999999999999999999999999999999655       222 222323323232222222112222  234455


Q ss_pred             HHHhhhhhhhhhhHhhhccC-ccchhhhhhh
Q 011781          446 GLALSSFALSGLYCTHQDIS-PEYASILLYL  475 (477)
Q Consensus       446 g~~~~~~~~~~~~~~~~~~~-p~~~g~~~gl  475 (477)
                      |++.+...+.......++.+ ++++|+++|+
T Consensus       296 g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~  326 (355)
T TIGR00896       296 GLGQGGAFPLALTLIGLRSRQAAQAAALSAM  326 (355)
T ss_pred             HHhhhhHhHHHHHHHHHhccCHHHHHHHHHH
Confidence            66655544433333444444 4557777765

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.95  E-value=2e-25  Score=219.41  Aligned_cols=329  Identities=16%  Similarity=0.110  Sum_probs=227.1

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcch-----hhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHH
Q 011781          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSV-----AGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLI  188 (477)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-----~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~  188 (477)
                      +....++++.++.......+.+++|.+.+++|.+..+     .|++.+++.++..++++++|+++||+|||+.+..+.++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   93 (408)
T PRK09874         14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALG   93 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHH
Confidence            3444556677777888888899999999999998655     48899999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccCh
Q 011781          189 WSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW  268 (477)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~  268 (477)
                      .+++.+++. ..++++.+++.|++.|++.+ ..+....++.+.+|+++|++++++......+|.+++|.+++.+.+..+|
T Consensus        94 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  171 (408)
T PRK09874         94 MGIVMVLMG-LAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGL  171 (408)
T ss_pred             HHHHHHHHH-HHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence            888777664 56778889999999999854 5677888899999999999999999999999999999999999998999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHH-HHHHHH
Q 011781          269 ESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAM-IYAHFC  347 (477)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~  347 (477)
                      ++.|++.+++.++..+...++.+++.++.++.  +  ....        +         ...+.+++++++.. .+..++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~--------~---------~~~~~~~~~~~~~~~~~~~~~  230 (408)
T PRK09874        172 RPVFFITASVLFLCFLVTLFCIRENFQPVSKK--E--MLHM--------R---------EVVTSLKNPKLVLSLFVTTLI  230 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCcccccch--h--hhHH--------H---------HHHHhCcCCchHHHHHHHHHH
Confidence            99999998877766555444333221111100  0  0000        0         01234556665443 333344


Q ss_pred             hHHHHHHHhhhhhHHHHHhhCCchh---hhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHH
Q 011781          348 GSWGHYTCLSWLPTYFSEELSLNLT---EAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVC  424 (477)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~g~~~~---~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~  424 (477)
                      ..........+++.|..+..+....   ..+.+....+++.+++.+..|++.||+++|        +.... +.....+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~--------~~~~~-~~~~~~~~  301 (408)
T PRK09874        231 IQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPE--------KILIT-ALIFSVLL  301 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------hhHHH-HHHHHHHH
Confidence            4445556667788888764332221   245566677788889999999999999876        33322 22222222


Q ss_pred             HhhhcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          425 MTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       425 ~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                      ....... ++.....+..++.|.+.+...+..........+++++|+++|+
T Consensus       302 ~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  351 (408)
T PRK09874        302 LIPMSFV-QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSY  351 (408)
T ss_pred             HHHHHHh-ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehH
Confidence            2222221 2333334445556666555544444444445566778988775

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.95  E-value=2.5e-25  Score=216.35  Aligned_cols=323  Identities=11%  Similarity=-0.042  Sum_probs=233.8

Q ss_pred             HHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHH-HHHHHHHHHH
Q 011781          119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVL-IWSLATALLP  197 (477)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~-~~~~~~~~~~  197 (477)
                      +.+.++........+.+++|.+.+++|.|..++|++.+++.+...++++++|+++||+||+........ ...+..+...
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~   88 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFS   88 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            445666777778889999999999999999999999999999999999999999999998543322111 1112222222


Q ss_pred             HhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHH
Q 011781          198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGL  277 (477)
Q Consensus       198 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~  277 (477)
                      ..+++++.+++.|+++|.+.+...|...++..+.  +++|++.+|......++|.+++|++++.+.+.+|||..|++.++
T Consensus        89 ~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~  166 (382)
T TIGR00902        89 AGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTA  166 (382)
T ss_pred             HhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence            3567788899999999999888889888887654  47889999999999999999999999999999999999988765


Q ss_pred             HHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhh
Q 011781          278 LGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLS  357 (477)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  357 (477)
                      +.++.. ..+.++++.++++++. ++ +                 .....++++++|+|++|...+..++...+...+..
T Consensus       167 ~~~~~~-~~~~~~~~~~~~~~~~-~~-~-----------------~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~  226 (382)
T TIGR00902       167 GLAFML-IGFLIKPTIPPKDAIP-ED-E-----------------SQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYG  226 (382)
T ss_pred             HHHHHH-HHHHcCCCCCCCcccc-cc-c-----------------cccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHH
Confidence            533333 2333333211111100 00 0                 00112356889999999999888888888889999


Q ss_pred             hhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcccCCCchH
Q 011781          358 WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHW  437 (477)
Q Consensus       358 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~  437 (477)
                      +.|.|+++ .|.+..+.|.+.+...++.+++..+.+++.||+|.|        +.+. .+.+...+...+... .++.+.
T Consensus       227 ~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~--------~~l~-~~~~~~~~~~~~~~~-~~~~~~  295 (382)
T TIGR00902       227 FSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSAR--------DLLL-ISAIACVGRWAIIGA-IEAFPL  295 (382)
T ss_pred             HHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHH--------HHHH-HHHHHHHHHHHHHHh-HhhHHH
Confidence            99999976 899999999999999999999999999999999876        3333 444444444333333 233344


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          438 EIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       438 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                      .+....+.|..++.........+ ++.+++++++.+|+
T Consensus       296 ~~~~q~l~g~~~~~~~~~~~~~i-~~~~~~~~~~~q~~  332 (382)
T TIGR00902       296 IFLLQILHCGTFAVCHLAAMRYI-AAQPGSEIAKLQAL  332 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HhCCHhhHHHHHHH
Confidence            45556677777666665544444 45576677776664

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.95  E-value=2.8e-25  Score=214.22  Aligned_cols=318  Identities=12%  Similarity=0.066  Sum_probs=221.3

Q ss_pred             hhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhh-----cChhHH-HHHHHHHHHHHHHHHHhh--c
Q 011781          130 KVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-----GGRKVL-QTGVLIWSLATALLPLLA--G  201 (477)
Q Consensus       130 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~-~~~~~~~~~~~~~~~~~~--~  201 (477)
                      ...+++..|.+.+++|+|.+++|+.... .+...+ .+++|+++||+     ||||.+ +.+.++.++....+.+..  .
T Consensus         4 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~   81 (356)
T TIGR00901         4 LGLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPST   81 (356)
T ss_pred             chhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcch
Confidence            3456778899999999999999999765 555554 89999999998     888875 556666666655554332  3


Q ss_pred             hHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccC--------hhHHHH
Q 011781          202 FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG--------WESVFY  273 (477)
Q Consensus       202 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g--------~~~~~~  273 (477)
                      +.+.+....++.+++.+...++..+++.|++|+++|+++.++...+..+|.++++.+++.+.+..|        ||..|+
T Consensus        82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~  161 (356)
T TIGR00901        82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFF  161 (356)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHH
Confidence            445567777788888888899999999999999999999999999999999999999999988888        999999


Q ss_pred             HHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHH---HHHHHHHHHHhHH
Q 011781          274 IFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKA---VWAMIYAHFCGSW  350 (477)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~  350 (477)
                      +.+++.++..+..++..+++.+.++.  +++..    +.            ...+++.++++|.   ++...+..++...
T Consensus       162 i~ai~~l~~~~~~~~~~~e~~~~~~~--~~~~~----~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (356)
T TIGR00901       162 WTALLILPGLLVTLFLAKEPQEDASV--PKPLT----QA------------VLKPIREFFQRKNMIQALLLLLLIVLYKL  223 (356)
T ss_pred             HHHHHHHHHHHHHHHhccCCCccccc--chhHH----HH------------HHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence            99887777655544433222111100  00000    00            0112456677664   6666666777777


Q ss_pred             HHHHHhhhhhHHHHHhhCCchhhhHHHHHHHH-HHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhc
Q 011781          351 GHYTCLSWLPTYFSEELSLNLTEAAWVSILPP-LASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSS  429 (477)
Q Consensus       351 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~  429 (477)
                      .......++|.|+++ +|++..+.+.+....+ ++.+++.+++|++.||+|+|        +.+.....+..........
T Consensus       224 ~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~--------~~l~~~~~~~~~~~~~~~~  294 (356)
T TIGR00901       224 GDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNIL--------YALLLFGIVQALTNAGFVW  294 (356)
T ss_pred             HHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHHHHHHHHHH
Confidence            888888999999987 8999999998887766 57789999999999999976        3333333322222222211


Q ss_pred             cc-CC-------CchHHH-HHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhhc
Q 011781          430 ID-LG-------LPHWEI-VGILTAGLALSSFALSGLYCTHQDISPEYASILLYLE  476 (477)
Q Consensus       430 ~~-~~-------~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl~  476 (477)
                      .. ..       ...+.+ ...++.+++.+.........+.+..+++++|+.+|+.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~  350 (356)
T TIGR00901       295 LASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALL  350 (356)
T ss_pred             HHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence            11 11       123333 3344445555555555555555567788899999863

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.95  E-value=2.1e-25  Score=221.07  Aligned_cols=335  Identities=16%  Similarity=0.130  Sum_probs=250.7

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHH
Q 011781          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (477)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (477)
                      +.+..++++.++..++..+.....+.+..++.-|+..++++..+..+..++.++++|.++||++||++++.+.++.++..
T Consensus        10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~   89 (524)
T PF05977_consen   10 RNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVA   89 (524)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence            45556777888888999999999999888888899999999999999999999999999999999999999988776655


Q ss_pred             HHHHHhh----chHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChh
Q 011781          194 ALLPLLA----GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWE  269 (477)
Q Consensus       194 ~~~~~~~----~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~  269 (477)
                      ++++...    .+.+.+++..++.|++.+...|+..+++.+..|+++...++++.+...+++.++||.++|.+...+|-.
T Consensus        90 ~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~  169 (524)
T PF05977_consen   90 LLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAA  169 (524)
T ss_pred             HHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence            4443321    346788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhH
Q 011781          270 SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGS  349 (477)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  349 (477)
                      ++|++.++..++.++.....+++.++++.   .+++.   .+.            -+..++.+.++|.+...++..++..
T Consensus       170 ~~f~inalsfl~~i~~l~~~~~~~~~~~~---~~e~~---~~~------------l~~G~ryv~~~~~l~~~l~~~~~~~  231 (524)
T PF05977_consen  170 AAFLINALSFLISILALLRWKPPPPPSSL---PRERF---FSA------------LREGLRYVRSSPPLRSVLLRSFLFN  231 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccccccccc---chhhh---hhh------------HHHHHHHHhcchHHHHHHHHHHHHH
Confidence            99999888777665555544432221111   11100   000            0123456777888777766666666


Q ss_pred             HHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhc
Q 011781          350 WGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSS  429 (477)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~  429 (477)
                      +....+...+|.+.++.+|.++...|++.+..++++++|.++.+++.+|++++        +.+... .+..+++++.+.
T Consensus       232 l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~--------~lv~~~-~~~~a~~~~~la  302 (524)
T PF05977_consen  232 LFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSR--------RLVLLA-SLLFALALLLLA  302 (524)
T ss_pred             HhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc--------hhhHHH-HHHHHHHHHHHh
Confidence            66667778899999999999999999999999999999999999998887654        333333 333333333333


Q ss_pred             ccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhhc
Q 011781          430 IDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYLE  476 (477)
Q Consensus       430 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl~  476 (477)
                      +. ++.+...+.+++.|.+............+...|++.+|+++|+.
T Consensus       303 l~-~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~  348 (524)
T PF05977_consen  303 LS-PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIY  348 (524)
T ss_pred             cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHH
Confidence            32 23333444555666665555544444444456666699999864

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10054 putative transporter; Provisional

Probab=99.95  E-value=1.8e-25  Score=217.96  Aligned_cols=324  Identities=11%  Similarity=0.058  Sum_probs=227.1

Q ss_pred             HHHHHHHHHHHHhhhhHHHHhHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHH
Q 011781          116 IGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA  194 (477)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  194 (477)
                      +..+.+..++...+.....+++|. +.+++|++..++|++.+++.++..+++++.|+++||+|||+++.++.++.+++.+
T Consensus         9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~   88 (395)
T PRK10054          9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFI   88 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHH
Confidence            334555666677777777777665 6678999999999999999999999999999999999999999999888888777


Q ss_pred             HHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHH
Q 011781          195 LLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYI  274 (477)
Q Consensus       195 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~  274 (477)
                      ++. +.++++.+++++++.|.+.+...+...++..|..++++|++++++.....++|.++||.+++++.+ .+|+..|++
T Consensus        89 ~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~  166 (395)
T PRK10054         89 AIP-LVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWL  166 (395)
T ss_pred             HHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHH
Confidence            764 566777788888888888777888899999999999999999999999999999999999999875 699999999


Q ss_pred             HHHHHHHHHHHHH-HhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHH
Q 011781          275 FGLLGIAWFSGFK-ILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHY  353 (477)
Q Consensus       275 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  353 (477)
                      .+++.++..+... ++++++++++++   +++                    ....++.+++|.++...+..++..+...
T Consensus       167 ~~~~~~i~~i~~~~~~~~~~~~~~~~---~~~--------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~  223 (395)
T PRK10054        167 AAICSAFPLVFIQIWVQRSEKAIATE---TGS--------------------VWSPSVLLQDKALLWFTCSGFLASFVSG  223 (395)
T ss_pred             HHHHHHHHHHHHHHHHhccccccccc---hhh--------------------hhhhhhhccCceehHHHHHHHHHHHHHH
Confidence            8887776654443 344433221100   000                    0012467888998888877777777766


Q ss_pred             HHhhhhhHHHHHh--hCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhccc
Q 011781          354 TCLSWLPTYFSEE--LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSID  431 (477)
Q Consensus       354 ~~~~~~~~~~~~~--~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~  431 (477)
                      .+..+.+.|....  .+.+....+.+.....+..+......+++.||.++|        +.. ..++....+.+......
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~--------~~l-~~~~~~~~~~~~~~~~~  294 (395)
T PRK10054        224 AFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIR--------PLM-TAGTLCFVIGLVGFIFS  294 (395)
T ss_pred             HhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCch--------hHH-HHHHHHHHHHHHHHHHc
Confidence            6666777777543  345566677777777777777778888999988765        222 22332223322222221


Q ss_pred             CCCchHHHHHHHHHHHHhhhhhhhhhhHhhhc-cCccchhhhhh
Q 011781          432 LGLPHWEIVGILTAGLALSSFALSGLYCTHQD-ISPEYASILLY  474 (477)
Q Consensus       432 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~p~~~g~~~g  474 (477)
                      .++.+.+.+...+.+.+.... .+.......+ .+++.+|+++|
T Consensus       295 ~~~~~~~~~~~~~~~~g~~~~-~p~~~~~~~~~~p~~~~~~~~~  337 (395)
T PRK10054        295 GNSLLLWGMSAAVFTVGEIIY-APGEYMLIDHIAPPGMKASYFS  337 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHhCCcccceehHh
Confidence            122222334445555554333 3344444544 45556888765

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.95  E-value=3.9e-25  Score=216.12  Aligned_cols=322  Identities=18%  Similarity=0.156  Sum_probs=221.5

Q ss_pred             HHHhhhhHHHHhHHhhhhhhC--CCcchhhHHHHH-----HHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHH
Q 011781          125 ICNMDKVNLSVAIIPMSHRFG--WNSSVAGLVQSS-----FFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP  197 (477)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~g--~s~~~~g~~~~~-----~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  197 (477)
                      ...++...++...+.+.++..  .++.+.+.+.+.     ..++..+++++.|+++||+|||+++..+.++..++.+++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~   83 (394)
T TIGR00883         4 VEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIG   83 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence            456677777777777766654  445556665543     2333346889999999999999999999999888887775


Q ss_pred             HhhchHH--------HHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhh------
Q 011781          198 LLAGFMP--------GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII------  263 (477)
Q Consensus       198 ~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~------  263 (477)
                       ..+++.        .+++.|+++|++.+...+....++.|++++++|++..++...+..+|.++++.+++.+.      
T Consensus        84 -~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~  162 (394)
T TIGR00883        84 -LLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD  162 (394)
T ss_pred             -hCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence             444433        47889999999999999999999999999999999999999999999999998877654      


Q ss_pred             --cccChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHH--HH
Q 011781          264 --ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKA--VW  339 (477)
Q Consensus       264 --~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  339 (477)
                        +..+||+.|++.+++.++........+++++.+.++.                    +++....++++.++++.  ++
T Consensus       163 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~  222 (394)
T TIGR00883       163 ALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQE--------------------KHKKKRGPIRETLTKHRKPFL  222 (394)
T ss_pred             HhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHh--------------------ccccccCCHHHHHHhchHHHH
Confidence              3578999999877766655444434443321111000                    00111234556666655  66


Q ss_pred             HHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhh
Q 011781          340 AMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFL  419 (477)
Q Consensus       340 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~  419 (477)
                      ...+..++..........++|.|+++.+|.+..+.+.......++..++.++.|++.||+|+|        +.......+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~--------~~~~~~~~~  294 (394)
T TIGR00883       223 LGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRR--------PVLIIFTVL  294 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchH--------HHHHHHHHH
Confidence            666666777777778889999999888899999999999999999999999999999999877        333322222


Q ss_pred             hhHHH-Hhhhcc-cCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          420 SPAVC-MTLSSI-DLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       420 ~~~~~-~~l~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                      ..... ..+... ...+........++.+.+.+....+......+..++++|++++|+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  352 (394)
T TIGR00883       295 AALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASL  352 (394)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeee
Confidence            22222 111111 112222333344455555545554444444444566678888775

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.95  E-value=4.8e-25  Score=221.97  Aligned_cols=289  Identities=17%  Similarity=0.166  Sum_probs=201.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhh-----CCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHH
Q 011781          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRF-----GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGV  186 (477)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~  186 (477)
                      +++.+.++.++.+..+++...++...|.+..++     +.+..+.+++.+.+.++.+++++++|+++||+|||+++.++.
T Consensus        14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~   93 (502)
T TIGR00887        14 HFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMEL   93 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            455666777788888899988898888876642     345567789999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHhhch------HHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhH
Q 011781          187 LIWSLATALLPLLAGF------MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAP  260 (477)
Q Consensus       187 ~~~~~~~~~~~~~~~~------~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~  260 (477)
                      +++.++.++.+ .+.+      ++.+++.|++.|++.+...+....++.|++|+++|++++++.+....+|.++++.++.
T Consensus        94 ~~~~v~~~~~~-~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~  172 (502)
T TIGR00887        94 IIMIIATVASG-LSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVAL  172 (502)
T ss_pred             HHHHHHHHHHH-HccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888877765 3332      5789999999999999999999999999999999999999999999999999998887


Q ss_pred             Hhhc-----------------------ccChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCC---cchhhh-hhh-h
Q 011781          261 PIIE-----------------------NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAP---RSNYIN-MKK-S  312 (477)
Q Consensus       261 ~l~~-----------------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~-~  312 (477)
                      .+..                       ..+||+.+.+.++..++..+..+++||+++.-..+.++   ..+... ..+ .
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~  252 (502)
T TIGR00887       173 IVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVK  252 (502)
T ss_pred             HHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccc
Confidence            6532                       23799999888887777777777888876532111111   110000 000 0


Q ss_pred             hhhhHHh---hc--cCCCCCCHHHHhhc---HHHHH----HHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHH----
Q 011781          313 LSASLEE---MG--ESLKDVPWKAIFRS---KAVWA----MIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAW----  376 (477)
Q Consensus       313 ~~~~~~~---~~--~~~~~~~~~~~~~~---~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~----  376 (477)
                      ..+..++   .+  ++..+.++++++++   ++.+.    ..+..+.....+++...+.|.++++ .|++....+.    
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~~~~~~  331 (502)
T TIGR00887       253 IEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAATNNAYE  331 (502)
T ss_pred             cccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCccchhHHH
Confidence            0000000   00  01111246666653   22211    1222333344555667778898865 6886543221    


Q ss_pred             --------HHHHHHHHHHHHHHhhhhchhHHHhc
Q 011781          377 --------VSILPPLASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       377 --------~~~~~~~~~~~~~~~~g~l~dr~g~~  402 (477)
                              ......++.+++.++.+++.||+|||
T Consensus       332 ~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR  365 (502)
T TIGR00887       332 ELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRK  365 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcch
Confidence                    22334456677888999999999987

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.94  E-value=4.3e-25  Score=243.80  Aligned_cols=304  Identities=13%  Similarity=0.076  Sum_probs=219.0

Q ss_pred             chhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHH--HHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHH
Q 011781          149 SVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQT--GVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATD  226 (477)
Q Consensus       149 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  226 (477)
                      ...++..+++.++++++++++|+++||+|||+++..  ...+......+.++..++++.++++|+++|++.+...|+..+
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a  131 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS  131 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence            457888899999999999999999999999997643  222222222223234477899999999999999999999999


Q ss_pred             HhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchh
Q 011781          227 LIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNY  306 (477)
Q Consensus       227 ~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (477)
                      ++.+++++++|++++|+.+++.++|.++||.++|++.+..+|++.|+..+++.++.+++.++++++++......... ..
T Consensus       132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  210 (1140)
T PRK06814        132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNAAPDLKIDR-NI  210 (1140)
T ss_pred             hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCeecc-ch
Confidence            99999999999999999999999999999999999999999999996655555555555556655433221111100 00


Q ss_pred             hhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHH
Q 011781          307 INMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASV  386 (477)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~  386 (477)
                      .   +.   .         ...++.+.+++.+|...+..++..+....+..++|.|+++.+|.++...|++.+..+++.+
T Consensus       211 ~---~~---~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~  275 (1140)
T PRK06814        211 I---RS---T---------ITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVA  275 (1140)
T ss_pred             H---HH---H---------HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence            0   00   0         0135678889999999888888888888888999999999899999999999999999999


Q ss_pred             HHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcc------------------cCCCchHHHHHHHHHHHH
Q 011781          387 LVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSI------------------DLGLPHWEIVGILTAGLA  448 (477)
Q Consensus       387 ~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~------------------~~~~~~~~~~~~~~~g~~  448 (477)
                      ++.++.|++.++.+++        +.+....++.+...+.+...                  ...+.+.+.+..+++|++
T Consensus       276 ig~~~~g~l~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  347 (1140)
T PRK06814        276 VGSFLASKLSEGRITL--------LYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAA  347 (1140)
T ss_pred             HHHHHHHHHhCCceee--------eeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHH
Confidence            9999999999876554        22221222221111111110                  012334445556667777


Q ss_pred             hhhhhhhhhhHhhhccCccchhhhhhhc
Q 011781          449 LSSFALSGLYCTHQDISPEYASILLYLE  476 (477)
Q Consensus       449 ~~~~~~~~~~~~~~~~~p~~~g~~~gl~  476 (477)
                      .+....+....+....+++++|+++|+.
T Consensus       348 ~~~~~~~~~~~~~~~~p~~~~G~v~g~~  375 (1140)
T PRK06814        348 GGLYIVPLFAALQAWANPAHRARVIAAN  375 (1140)
T ss_pred             HHHhHHHHHHHHHhhCCcccceeeeHHH
Confidence            6666655555555566777899998863

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.94  E-value=1.1e-24  Score=211.79  Aligned_cols=316  Identities=13%  Similarity=0.033  Sum_probs=225.6

Q ss_pred             HHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcCh----hHHHHHHHHHHHHHHHHHH
Q 011781          123 FVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGR----KVLQTGVLIWSLATALLPL  198 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r----~~~~~~~~~~~~~~~~~~~  198 (477)
                      ++....+...+.+++|.+.+++|.|..++|++.+++.++..++++++|+++||+||+    +.+.++..+.   .+....
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~---~~~~~~   89 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF---AVAFWF   89 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH---HHHHHH
Confidence            445556678889999999999999999999999999999999999999999999984    3333222221   122223


Q ss_pred             hhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHH
Q 011781          199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLL  278 (477)
Q Consensus       199 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~  278 (477)
                      ..++++.+++.|++.|++.+...|...+++.++  +++|+++++.......+|.++||.+++++.+++|||..|++.++.
T Consensus        90 ~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~  167 (382)
T PRK11128         90 GAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAG  167 (382)
T ss_pred             hcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence            457788888999999999888889888887776  356888899999999999999999999999999999999887765


Q ss_pred             HHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhhh
Q 011781          279 GIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSW  358 (477)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  358 (477)
                      .++..+...+.++++++.+    ++++                .+....++++++|+|.+|...+..++..........+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~----~~~~----------------~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~  227 (382)
T PRK11128        168 VASMLLGQLLRPTIMPQGE----SRQQ----------------ESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGF  227 (382)
T ss_pred             HHHHHHHHHccCCCCCccc----cccc----------------cccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHH
Confidence            5544433333222211100    0000                0001234678999999998888777777777778888


Q ss_pred             hhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcccCCCchHH
Q 011781          359 LPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWE  438 (477)
Q Consensus       359 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~  438 (477)
                      .|.|+.+ .|.+....|.+.+...++.++..++.+++.||++++        +.+. .+.+..++...+... .++.++.
T Consensus       228 ~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~--------~~l~-~~~~~~~~~~~~~~~-~~~~~~~  296 (382)
T PRK11128        228 SAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSAR--------DLLL-LSAICGVVRWGLMGS-TTALPWL  296 (382)
T ss_pred             HHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH--------HHHH-HHHHHHHHHHHHHHh-hhhHHHH
Confidence            9999965 799999999999988899999999999999999876        3333 333333333333322 2333444


Q ss_pred             HHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          439 IVGILTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       439 ~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                      ++..++.|.+.+... +......++.+++++++++|+
T Consensus       297 ~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  332 (382)
T PRK11128        297 IVIQILHCGTFTVCH-LAAMRYIAARPGSEVIRLQAL  332 (382)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHCCHhhhHHHHHH
Confidence            455566666655444 344444555677777777664

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.94  E-value=3.7e-26  Score=233.25  Aligned_cols=285  Identities=17%  Similarity=0.174  Sum_probs=223.0

Q ss_pred             HHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHH
Q 011781          117 GTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL  196 (477)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  196 (477)
                      +.+++..+...+.....+..++.+.++++++..+.|++.+.+.+++.++.++.+++.||+|||+++.++.++++++.+++
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~  115 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL  115 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence            44444666666777888888999999999999999999999999999999999999999999999999999999999887


Q ss_pred             HHhhc---------------------------------------------------hHHHHHHHHHHHHhhccchhhhHH
Q 011781          197 PLLAG---------------------------------------------------FMPGLVLSRVLVGIGEGVSPSAAT  225 (477)
Q Consensus       197 ~~~~~---------------------------------------------------~~~~~~~~~~l~g~~~~~~~~~~~  225 (477)
                      +. ++                                                   .+..++++|+++|+|.+..++...
T Consensus       116 al-phf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~  194 (633)
T TIGR00805       116 SL-PHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGI  194 (633)
T ss_pred             hC-hHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCc
Confidence            53 31                                                   244677899999999999999999


Q ss_pred             HHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhccc----------------------ChhHHHHHHHHHHHHHH
Q 011781          226 DLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL----------------------GWESVFYIFGLLGIAWF  283 (477)
Q Consensus       226 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~----------------------g~~~~~~~~~~~~~~~~  283 (477)
                      +++.|++|+++|+++++++..+..+|.++|+++++++.+.+                      +|+..|++.+++.++..
T Consensus       195 ~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~  274 (633)
T TIGR00805       195 SYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTS  274 (633)
T ss_pred             hhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999987543                      27778888888887776


Q ss_pred             HHHHHhccCCcCCCCCCC-CcchhhhhhhhhhhhHHhhccC--CCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhhhhh
Q 011781          284 SGFKILQEGETSNGATLA-PRSNYINMKKSLSASLEEMGES--LKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLP  360 (477)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  360 (477)
                      +.+++++++.++.....+ +..+.....+............  .....++.+++||.++...+..++......++.+++|
T Consensus       275 v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP  354 (633)
T TIGR00805       275 IPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLP  354 (633)
T ss_pred             HHHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666665432211100 0000000000000000000000  0012356789999999999999999999999999999


Q ss_pred             HHHHHhhCCchhhhHHHHHHHHH-HHHHHHHhhhhchhHHHhc
Q 011781          361 TYFSEELSLNLTEAAWVSILPPL-ASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       361 ~~~~~~~g~~~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g~~  402 (477)
                      .|+++.+|+++.+++++.+...+ +.+++.+++|+++||++.+
T Consensus       355 ~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~  397 (633)
T TIGR00805       355 KYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN  397 (633)
T ss_pred             HHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence            99999999999999999888776 5688999999999999755

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.94  E-value=4.4e-24  Score=208.43  Aligned_cols=319  Identities=15%  Similarity=0.039  Sum_probs=203.2

Q ss_pred             HHHHHHHHHHhhhhHHHHhHHh-hhhhhCCCcchhhHHHHHHHH-HHHHhhhhhhhhhhhhcChhHHH-HHHHHHHHHHH
Q 011781          118 TTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFW-GYALSQLPGGWLAKIFGGRKVLQ-TGVLIWSLATA  194 (477)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~~-~~~~~~~~~~~  194 (477)
                      .+.+..++.........+.++. +.+++|.+.+++|++.+...+ +..++++++++ .||+|+|+.++ .+.++.+++..
T Consensus        19 ~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~   97 (393)
T PRK15011         19 AFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACT   97 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHH
Confidence            3344466777777777777776 678899999999999876655 55566655555 99999998754 44455445555


Q ss_pred             HHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcch--hhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHH
Q 011781          195 LLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEER--SRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF  272 (477)
Q Consensus       195 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~  272 (477)
                      +.. ++++++.+++.+.+.+...+...|....++.++.++++|  +...++.+.+.++|.++||++++.+.+++|||+.|
T Consensus        98 ~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f  176 (393)
T PRK15011         98 LFA-WNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMY  176 (393)
T ss_pred             HHH-HhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHH
Confidence            553 566667666665555555567778888888887766555  34557888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH-hccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhc-HHHHHHHHHHHHhHH
Q 011781          273 YIFGLLGIAWFSGFKI-LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRS-KAVWAMIYAHFCGSW  350 (477)
Q Consensus       273 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~  350 (477)
                      ++.+++.++..+.... +++.+++++..  +. +.           +            ...++ +..+...+..++...
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~-----------~------------~~~~~~~~~~~~~~~~~~~~~  230 (393)
T PRK15011        177 LSAAVAFIVCGVMVWLFLPSMRKELPLA--TG-TL-----------E------------APRRNRRDTLLLFVICTLMWG  230 (393)
T ss_pred             HHHHHHHHHHHHHHHhhcCccCCCCccc--cc-cc-----------c------------ccccccccHHHHHHHHHHHHH
Confidence            9988877766555443 44432211110  00 00           0            00011 222333333344444


Q ss_pred             HHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcc
Q 011781          351 GHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSI  430 (477)
Q Consensus       351 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~  430 (477)
                      ....+..+.|.|+++.+|++..+.+.+.+...++.+++.++.|+++||+++|        +.... +.............
T Consensus       231 ~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~--------~~~~~-~~~~~~~~~~~~~~  301 (393)
T PRK15011        231 TNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKR--------FLMRV-AAVAGVCFYAGMLM  301 (393)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH--------HHHHH-HHHHHHHHHHHHHH
Confidence            5556667899999888999999999888887888888999999999999887        33222 22222222222111


Q ss_pred             cCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          431 DLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       431 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                       .++..+..+..++.+.+.+ ...+......++..|+++|+++|+
T Consensus       302 -~~~~~~~l~~~~l~~~~~g-~~~~~~~~~~~~~~p~~~g~~~~~  344 (393)
T PRK15011        302 -AHSPAILLGLQLLNAIYIG-ILGGIGMLYFQDLMPGQAGSATTL  344 (393)
T ss_pred             -HhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCcchHHHH
Confidence             1222222322232333322 222333455567777889988775

>TIGR00898 2A0119 cation transport protein

Probab=99.94  E-value=3.7e-25  Score=223.58  Aligned_cols=325  Identities=17%  Similarity=0.135  Sum_probs=217.2

Q ss_pred             HhHHhhhhhhCCC---cchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 011781          135 VAIIPMSHRFGWN---SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRV  211 (477)
Q Consensus       135 ~~~~~~~~~~g~s---~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (477)
                      ...+.+.++++++   ..+.++..+++.++..++++++|+++||+|||++++++.++.+++.++.+ ++++++.+++.|+
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~r~  188 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTA-FSPNYTVFLVFRL  188 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHH-HcccHHHHHHHHH
Confidence            4667889999999   89999999999999999999999999999999999999988888887774 6778899999999


Q ss_pred             HHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHHHHHhcc
Q 011781          212 LVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQE  291 (477)
Q Consensus       212 l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  291 (477)
                      +.|++.+...+....++.|++|+++|+++.++...+..+|.+++|.+++.+.+   ||+.|++.++..++..+..++++|
T Consensus       189 l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~~~~~e  265 (505)
T TIGR00898       189 LVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLSWFVPE  265 (505)
T ss_pred             HHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999877653   999999999888777777777776


Q ss_pred             CCcCCCCCCCCcchhhhhhh-----------h-hhhh-HHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhhh
Q 011781          292 GETSNGATLAPRSNYINMKK-----------S-LSAS-LEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSW  358 (477)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~-----------~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  358 (477)
                      +++....+.+.++.....++           . .... .++.+++.++.++++++++|.++...+...+..+........
T Consensus       266 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (505)
T TIGR00898       266 SPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYG  345 (505)
T ss_pred             ChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            54321111111100000000           0 0000 011111122346788999998887766655544443333333


Q ss_pred             hhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcccCCCchHH
Q 011781          359 LPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWE  438 (477)
Q Consensus       359 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~  438 (477)
                      ++.+.. .++.+..   ......++..+++.++.+++.||+|+|        +......++.+..++++.........+.
T Consensus       346 ~~~~~~-~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr--------~~~~~~~~~~~~~~l~~~~~~~~~~~~~  413 (505)
T TIGR00898       346 LVLDLG-NLGGNIY---LDLFISGLVELPAKLITLLLIDRLGRR--------YTMAASLLLAGVALLLLLFVPVDLYFLR  413 (505)
T ss_pred             Hhcccc-ccCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCH--------HHHHHHHHHHHHHHHHHHHcCCCchHHH
Confidence            333332 3455433   334455677888999999999999876        3333333332233232322221111222


Q ss_pred             HHHHHHHHHHhhhhhhhhhhHhhhc-cCccchhhhhhhc
Q 011781          439 IVGILTAGLALSSFALSGLYCTHQD-ISPEYASILLYLE  476 (477)
Q Consensus       439 ~~~~~~~g~~~~~~~~~~~~~~~~~-~~p~~~g~~~gl~  476 (477)
                      ....++.+++.. ...+....+..+ .+++.|++++|+.
T Consensus       414 ~~~~~~~~~~~~-~~~~~~~~~~~e~~p~~~r~~~~g~~  451 (505)
T TIGR00898       414 TALAVLGKFGIT-SAFQMVYLYTAELYPTVVRNLGVGVC  451 (505)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHhcccccHHHHhhhHhHH
Confidence            333333333333 333444455555 4555689888763

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.94  E-value=4.1e-24  Score=213.62  Aligned_cols=264  Identities=15%  Similarity=0.154  Sum_probs=202.3

Q ss_pred             HHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhh-----cChhH-HHHHHHHHHH
Q 011781          118 TTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-----GGRKV-LQTGVLIWSL  191 (477)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~-~~~~~~~~~~  191 (477)
                      .+++..+..+.........+|.+.++.|.+..++|.. +.....+ ++.+++|+++||+     |||+. +..+.++.++
T Consensus        16 ~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~   93 (491)
T PRK11010         16 ILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLV   93 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHH
Confidence            4555556777788888888999999999999999997 4444444 5889999999999     99885 5566666656


Q ss_pred             HHHHHHHhh--chHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhc-ccCh
Q 011781          192 ATALLPLLA--GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-NLGW  268 (477)
Q Consensus       192 ~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~-~~g~  268 (477)
                      +...+++..  ++++.+.+.+++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++++.+ ..||
T Consensus        94 ~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GW  173 (491)
T PRK11010         94 AIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGW  173 (491)
T ss_pred             HHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCH
Confidence            655554332  4567788899999999999999999999999999999999999999999999999999999998 5799


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHh
Q 011781          269 ESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCG  348 (477)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  348 (477)
                      |..|++.+++.++..+..++.+|+++..+ .   +++.   ++            ....++++.++++..|...+..++.
T Consensus       174 r~~f~i~a~l~ll~~l~~~~~~e~~~~~~-~---~~~~---~~------------~~~~~l~~~~~~~~~~~~ll~~~l~  234 (491)
T PRK11010        174 QGMYWLMAALLIPCIIATLLAPEPTDTIP-V---PKTL---EQ------------AVVAPLRDFFGRNNAWLILLLIVLY  234 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCccccc-c---ccch---hh------------hHHHHHHHHHcCcCHHHHHHHHHHH
Confidence            99999999887776665555554332110 0   0000   00            0011345677777777766666666


Q ss_pred             HHHHHHHhhhhhHHHHHhhCCchhhhHHHHH-HHHHHHHHHHHhhhhchhHHHhc
Q 011781          349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSI-LPPLASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~-~~~~~~~~~~~~~g~l~dr~g~~  402 (477)
                      .........+.+.|+.+.+|++..+.+.+.. ...++.+++.+++|+++||+|+|
T Consensus       235 ~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~  289 (491)
T PRK11010        235 KLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLF  289 (491)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            6666666778888887778999999999875 55678999999999999999976

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.94  E-value=1.3e-23  Score=192.47  Aligned_cols=326  Identities=17%  Similarity=0.159  Sum_probs=258.6

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHH
Q 011781          115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA  194 (477)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  194 (477)
                      .+..+...+++.++......+.+|.+.+.++++..+++++...+..++.+.+++.|++.+|+|+|+.+++++.++++++.
T Consensus        14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~   93 (422)
T COG0738          14 AFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAA   93 (422)
T ss_pred             HHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            34455566667778888889999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHH--hhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcc-------
Q 011781          195 LLPL--LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-------  265 (477)
Q Consensus       195 ~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~-------  265 (477)
                      ++.-  ...++..+++..++.|.|.+....+.+.++..+.++++..+.+.+.+.++.+|.++||++++.+..+       
T Consensus        94 lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~  173 (422)
T COG0738          94 LFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMS  173 (422)
T ss_pred             HHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccC
Confidence            8732  3456778889999999999999999999999999998899999999999999999999999988762       


Q ss_pred             ------------cChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHh
Q 011781          266 ------------LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIF  333 (477)
Q Consensus       266 ------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (477)
                                  -.|+++|...+...++..+.....+.++.+.......+.                    +.....+++
T Consensus       174 ~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~--------------------~~~~~~~l~  233 (422)
T COG0738         174 AAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGAS--------------------GSAGLSSLF  233 (422)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccccccccc--------------------ccchHHHHH
Confidence                        137888888877776666665555433322221111110                    011346899


Q ss_pred             hcHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhh
Q 011781          334 RSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKIC  413 (477)
Q Consensus       334 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~  413 (477)
                      ++|+++...+..|++...+.....|++.|+.+..|.+..+++...+..+.+.++|++++.++..|+..+        |.+
T Consensus       234 ~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~--------k~L  305 (422)
T COG0738         234 QNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE--------KYL  305 (422)
T ss_pred             hChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH--------HHH
Confidence            999999999999999999999999999999987899999999999999999999999999999998665        555


Q ss_pred             hHHhhhhhHHHHhhhcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhh
Q 011781          414 QTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASIL  472 (477)
Q Consensus       414 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~  472 (477)
                      ....+....+++......   ..+.+.+.+++|.+.+.+++.......+.++ ++....
T Consensus       306 af~a~~~ill~~~~~l~~---g~v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~  360 (422)
T COG0738         306 AFYALIAILLLLAVALIG---GVVALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVG  360 (422)
T ss_pred             HHHHHHHHHHHHHHHHhc---ChHHHHHHHHHHHHhHHHHHHHHHHHHhccC-cccccc
Confidence            555544444444444332   3566677778888877666555555555555 554443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.93  E-value=8.4e-24  Score=234.34  Aligned_cols=333  Identities=15%  Similarity=0.102  Sum_probs=225.7

Q ss_pred             HHHHHHHHHhhh-hHHHHhHHhhhhhhCCCc--chhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHH
Q 011781          119 TSLAFVICNMDK-VNLSVAIIPMSHRFGWNS--SVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATAL  195 (477)
Q Consensus       119 ~~~~~~~~~~~~-~~~~~~~~~~~~~~g~s~--~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  195 (477)
                      +++..++..+.. .......+.+..+++.+.  ...+++.+++.++++++++++|+++||+|||++++++.++..+..++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~   93 (1146)
T PRK08633         14 LLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLL   93 (1146)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHH
Confidence            334444444333 333444555656666554  44689999999999999999999999999999999887665554443


Q ss_pred             HH--HhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcc--------
Q 011781          196 LP--LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN--------  265 (477)
Q Consensus       196 ~~--~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~--------  265 (477)
                      ..  ...++++.++++|++.|++.+...++..+++.+++|+++|++++|+...+..+|.++|+++++++.+.        
T Consensus        94 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~  173 (1146)
T PRK08633         94 IVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSE  173 (1146)
T ss_pred             HHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence            32  23466789999999999999999999999999999999999999999999999999999999999875        


Q ss_pred             c-ChhHHHHHHHHHHH-HHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHH
Q 011781          266 L-GWESVFYIFGLLGI-AWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIY  343 (477)
Q Consensus       266 ~-g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  343 (477)
                      + +|.+.+.+.++... +.+++.+.+++.+....... ++..... .+   .         ....++.+++++.++...+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~---~---------~~~~~~~l~~~~~~~~~~~  239 (1146)
T PRK08633        174 ILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVF-DKKKYLF-PK---L---------LWRNLKLLRSDRVLWLAII  239 (1146)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccc-ccccccc-HH---H---------HHHHHHHHhcCcHHHHHHH
Confidence            2 34444444433332 23333344444332211110 0000000 00   0         0112466788888888877


Q ss_pred             HHHHhHHHHHHHhhhhhHHHHHhhCCchh-hhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhH
Q 011781          344 AHFCGSWGHYTCLSWLPTYFSEELSLNLT-EAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPA  422 (477)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~  422 (477)
                      ..++..+.......++|.|+.+.+|++.. ..+++.+...++.+++.++.+++.||++++        +...+ +.+..+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~--------~~~~~-~~~~~~  310 (1146)
T PRK08633        240 GLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIEL--------GLVPL-GALGLA  310 (1146)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEc--------cchhH-HHHHHH
Confidence            77777777777888999999988999998 999999999999999999999999998765        22222 222222


Q ss_pred             HHHhhhcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          423 VCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       423 ~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                      ++++++... .+..+.++.++++|++.+....+....+....+++++|+++|+
T Consensus       311 ~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~  362 (1146)
T PRK08633        311 LSLFLLPTA-PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAA  362 (1146)
T ss_pred             HHHHHHHHh-hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHH
Confidence            222222221 2333444556666666555554444444455667779998875

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.93  E-value=2.9e-23  Score=203.37  Aligned_cols=263  Identities=14%  Similarity=0.063  Sum_probs=200.7

Q ss_pred             HHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhh-----cChh-HHHHHHHHHHHH
Q 011781          119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-----GGRK-VLQTGVLIWSLA  192 (477)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~-~~~~~~~~~~~~  192 (477)
                      +...++.++.........+|.+.++.|+|.+++|++..+...  .+..+++|+++||+     |||| ++..+.++.+++
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~   81 (402)
T PRK11902          4 MLLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS   81 (402)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence            345567778888888999999999999999999999776665  58999999999999     7775 677777777666


Q ss_pred             HHHHHHhh--chHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcc-cChh
Q 011781          193 TALLPLLA--GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-LGWE  269 (477)
Q Consensus       193 ~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~-~g~~  269 (477)
                      ...+....  .+++.+++..++.+++.+...++..+++.+++|+++|+++.++...+..+|.++++.+++.+.+. .|||
T Consensus        82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~  161 (402)
T PRK11902         82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWG  161 (402)
T ss_pred             HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHH
Confidence            66654332  34566777778888888889999999999999999999999999999999999999999999885 5999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhH
Q 011781          270 SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGS  349 (477)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  349 (477)
                      ..|++.+++.++..+..++.+|++.+++++  +  +.   .+.            ...++++++++|.++.+++..++..
T Consensus       162 ~~f~i~a~~~l~~~l~~~~~~e~~~~~~~~--~--~~---~~~------------~~~~~~~l~~~~~~~~~l~~~~l~~  222 (402)
T PRK11902        162 NTYLLMAGLMLAGALTTLWAPEPEVPARPP--R--SL---GEA------------VVGPLRDFFSRRGAWALLLLIVLYK  222 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCccccccc--c--hh---HHH------------HHHHHHHHHhCcCHHHHHHHHHHHH
Confidence            999998887776655555555443221110  0  00   000            0113567889999888777666665


Q ss_pred             HHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHH-HHHHHHHHhhhhchhHHHhc
Q 011781          350 WGHYTCLSWLPTYFSEELSLNLTEAAWVSILPP-LASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~g~~  402 (477)
                      ........+.+.++.+.+|+++.+.+++....+ ++.+++.++++++.||+++|
T Consensus       223 ~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~  276 (402)
T PRK11902        223 LGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLY  276 (402)
T ss_pred             hHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            554444445566676778999999998876655 45889999999999999876

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.92  E-value=1.9e-22  Score=200.55  Aligned_cols=357  Identities=13%  Similarity=0.092  Sum_probs=234.3

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHhhh-hh--hCCCcchhhHHHHHHHHHHHHhhhhhhhhhhh-hcChhHHHHHHHHH
Q 011781          114 KLIGTTSLAFVICNMDKVNLSVAIIPMS-HR--FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIW  189 (477)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~  189 (477)
                      +.+..++...+...+......+.+|.+. ++  +|++..+.|++.+.+.++..++++++|+++|| +|||+++.++.++.
T Consensus        10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~   89 (475)
T TIGR00924        10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVL   89 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHH
Confidence            4455566666677777777777777654 44  89999999999999999999999999999999 89999999999999


Q ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcc---hhhHHHHHHhhhhhHHHHHHhhhHHhhccc
Q 011781          190 SLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEE---RSRAVSFVFGGLSFGSVAGLLLAPPIIENL  266 (477)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~  266 (477)
                      +++.++++ .+++.+.+++.+++.|++.+...+...+++++++|+++   |++++++.+.+.++|.++||.+++++.++.
T Consensus        90 ~~g~~~~~-~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~  168 (475)
T TIGR00924        90 MLGHFMLA-MSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY  168 (475)
T ss_pred             HHHHHHHH-hcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99888775 55566778889999999999999999999999998754   888999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCC---CCcchhhhhh-h------------hhh--hh------------
Q 011781          267 GWESVFYIFGLLGIAWFSGFKILQEGETSNGATL---APRSNYINMK-K------------SLS--AS------------  316 (477)
Q Consensus       267 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~------------~~~--~~------------  316 (477)
                      ||++.|++.++..++..+.+...++..++.+++.   .++++..... .            ...  +.            
T Consensus       169 g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (475)
T TIGR00924       169 GYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTL  248 (475)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            9999999988665555444444332211111000   0000000000 0            000  00            


Q ss_pred             ------HHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhh----hHHHHHHHHHHHH
Q 011781          317 ------LEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTE----AAWVSILPPLASV  386 (477)
Q Consensus       317 ------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~~~~~~~~  386 (477)
                            .+...+  +.....+-.|...+..+++..+++...+....+.++.+.++..+.+...    .+++.+...+..+
T Consensus       249 ~~~~~~~~~~~~--~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~ii  326 (475)
T TIGR00924       249 AVIIFFFRLAFK--PRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVV  326 (475)
T ss_pred             HHHHHHHHHHHh--ccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHH
Confidence                  000000  0111111122234455566666777777777888888887654444322    6678888888888


Q ss_pred             HHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcc--------cCCCchHHHHHHHHHHHHhhhhhhhhhh
Q 011781          387 LVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSI--------DLGLPHWEIVGILTAGLALSSFALSGLY  458 (477)
Q Consensus       387 ~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~~~~~g~~~~~~~~~~~~  458 (477)
                      +..++..++-.|..+|+.+.....|  ..+++++.+++.....+        ...+.+|.++..++.+.+-.... +...
T Consensus       327 l~~p~~~~~~~~l~~~~~~~~~~~k--~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~-p~~~  403 (475)
T TIGR00924       327 VGSPVLAMIWTRLGRKGKDPTTPLK--FTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMIS-PLGL  403 (475)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCcHHH--HHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHh-HHHH
Confidence            8877766666666665322221122  23334443333333221        12344566666777777755555 4555


Q ss_pred             Hhhhc-cCccchhhhhhhc
Q 011781          459 CTHQD-ISPEYASILLYLE  476 (477)
Q Consensus       459 ~~~~~-~~p~~~g~~~gl~  476 (477)
                      ....+ .|++.||+++|+.
T Consensus       404 ~~~~~~aP~~~~g~~~g~~  422 (475)
T TIGR00924       404 SWWTKIAPQRLMGQMLGMW  422 (475)
T ss_pred             HHHHHhCCHHHHHHHHHHH
Confidence            55555 4556699999864

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.92  E-value=4e-23  Score=203.85  Aligned_cols=353  Identities=17%  Similarity=0.168  Sum_probs=262.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHH
Q 011781          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (477)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (477)
                      |.++...+++..........++.+.+.+.++++.+..+++|+.++......+..++.+.+.||+|.|.+.++|.++.+++
T Consensus        45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g  124 (509)
T KOG2504|consen   45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALG  124 (509)
T ss_pred             eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHH
Confidence            45555555666666666667778889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhchHHH-HHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHH
Q 011781          193 TALLPLLAGFMPG-LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (477)
Q Consensus       193 ~~~~~~~~~~~~~-~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~  271 (477)
                      .++.. +++++|. ++..-++.|+|.+..+......+..+++ ++|+.++|+...+.++|.++-|.+...+.+.+|||+.
T Consensus       125 ~~lss-F~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~  202 (509)
T KOG2504|consen  125 LLLSS-FATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGA  202 (509)
T ss_pred             HHHHH-HHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHH
Confidence            98885 5555555 4556799999999999999999998887 8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCcCCCCC--------------------CCCcchhhhhhh---hhhhhHHhhccCC----
Q 011781          272 FYIFGLLGIAWFSGFKILQEGETSNGAT--------------------LAPRSNYINMKK---SLSASLEEMGESL----  324 (477)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~---~~~~~~~~~~~~~----  324 (477)
                      +++.+.+.+-..+....+++......+.                    .....+.....+   ......++.+.+.    
T Consensus       203 ~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (509)
T KOG2504|consen  203 LLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSP  282 (509)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccc
Confidence            9999988876666666655422221100                    000000000000   0000001111111    


Q ss_pred             -CCCCH---HHHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHH
Q 011781          325 -KDVPW---KAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLI  400 (477)
Q Consensus       325 -~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g  400 (477)
                       +....   .+++++|.++.+.+...+...++.....++|.|.. ..|++..+++.+.++.++..++++++.|+++|+..
T Consensus       283 ~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~  361 (509)
T KOG2504|consen  283 LQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPG  361 (509)
T ss_pred             hhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccc
Confidence             11111   57899999999999999999999999999999998 58999999999999999999999999999999986


Q ss_pred             hcCcccceehhhhhHHhhhhhHHHHhhhcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhhc
Q 011781          401 ATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYLE  476 (477)
Q Consensus       401 ~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl~  476 (477)
                      .+       ++.+..++++..++..+..... .+...+.....++|+..+.+.......+...+..++-..++|+.
T Consensus       362 ~~-------~~~~~~~~ll~~gl~~~~~p~~-~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~  429 (509)
T KOG2504|consen  362 IR-------ALVLFLLTLLIAGLARLFLPFA-TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLL  429 (509)
T ss_pred             cc-------hHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHH
Confidence            43       3455555555555554443332 22334555666777776666654445566667777777777764

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.92  E-value=1.1e-22  Score=198.90  Aligned_cols=270  Identities=12%  Similarity=0.036  Sum_probs=193.9

Q ss_pred             HHHHHHHHHHHHhhhhHHHHhHHhh-hhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHH
Q 011781          116 IGTTSLAFVICNMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA  194 (477)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  194 (477)
                      ++.+....++.......+.+++|.+ .+++|.++.+.|++.+++.++..++++++|+++||+|||+.++.+....+++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~   83 (396)
T TIGR00882         4 FWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFA   83 (396)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            3445556667777788888887774 567899999999999999999999999999999999999999877665544333


Q ss_pred             HHHH--hh-----chHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccC
Q 011781          195 LLPL--LA-----GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG  267 (477)
Q Consensus       195 ~~~~--~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g  267 (477)
                      ....  ..     +.+..+++.+++.|++.+...+....+..+..+  +++..+|......++|.++||.++|.+.+ .+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~  160 (396)
T TIGR00882        84 PFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFS-ID  160 (396)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhc-cC
Confidence            2211  11     223345667888899888888888888777543  34567788888899999999999998865 59


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHH
Q 011781          268 WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFC  347 (477)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  347 (477)
                      |++.|++.+++.++..+..+...++++++++. .+..+             ..+++.+..++++++|+|.++.+.+..++
T Consensus       161 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------------~~~~~~~~~~~~~~l~~~~~~~~~l~~~~  226 (396)
T TIGR00882       161 PQIVFWLGSGFALILMLLLMFAKPKAPSSATV-ANALG-------------ANASAFSLKLALELFRQRKFWMFVLYVVG  226 (396)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhCCCCchhhhh-hcccc-------------cccCCCCHHHHHHHHcCCcHHHHHHHHHH
Confidence            99999998888777665555443332211100 00000             00001111235678899998877777666


Q ss_pred             hHHHHHHHhhhhhHHHHHhh---CCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhc
Q 011781          348 GSWGHYTCLSWLPTYFSEEL---SLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~---g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~  402 (477)
                      ....+.....+.+.|+.+.+   +.+....|.+.+...+...++....+++.||+|+|
T Consensus       227 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~  284 (396)
T TIGR00882       227 VACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAK  284 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            66666666677888887654   45566778888888899999999999999999877

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.92  E-value=4.6e-22  Score=197.90  Aligned_cols=358  Identities=13%  Similarity=0.101  Sum_probs=228.7

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHh-HHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhh-hcChhHHHHHHHHHHH
Q 011781          114 KLIGTTSLAFVICNMDKVNLSVA-IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIWSL  191 (477)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~  191 (477)
                      +-+..++...+...+........ ..++.+++|.+..+.+++.+.+.....+..+++|+++|| +|||+++.++.+++++
T Consensus        14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~   93 (489)
T PRK10207         14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAI   93 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHH
Confidence            44445555555555555555544 445678899999999999999998888889999999999 9999999999999999


Q ss_pred             HHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCc--chhhHHHHHHhhhhhHHHHHHhhhHHhhcccChh
Q 011781          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE--ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWE  269 (477)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~  269 (477)
                      +.+++....+....+++.|+++|+|.+...|...+++.|.+|++  +|++++++++.+.++|.++||.+++++.++.|||
T Consensus        94 g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~  173 (489)
T PRK10207         94 GYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYS  173 (489)
T ss_pred             HHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChH
Confidence            98887543332334568899999999999999999999999876  4577999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCcCCC----CCCCCcchhhh-----------hhhhhh--hhHH-------------h
Q 011781          270 SVFYIFGLLGIAWFSGFKILQEGETSNG----ATLAPRSNYIN-----------MKKSLS--ASLE-------------E  319 (477)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-----------~~~~~~--~~~~-------------~  319 (477)
                      +.|++.++..++..+.+...++..++..    +.+.+..+...           ......  ....             -
T Consensus       174 ~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f  253 (489)
T PRK10207        174 VTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIF  253 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            9999976544444433333332211110    00001001000           000000  0000             0


Q ss_pred             hccCCCCCCHHHHhhcHHHHHHHH--HHHHhHHHHHHHhhhhhHHHHHhhCCch----hhhHHHHHHHHHHHHHHHHhhh
Q 011781          320 MGESLKDVPWKAIFRSKAVWAMIY--AHFCGSWGHYTCLSWLPTYFSEELSLNL----TEAAWVSILPPLASVLVTSIAA  393 (477)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~g~~~~~~~~~~~~~~~~~g  393 (477)
                      ..+..+ .  .+..|+|.+....+  ...+....+....+.++.|.++..+.+.    ...+.+.....+..++..++.+
T Consensus       254 ~~~~~~-~--~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~  330 (489)
T PRK10207        254 FREAFK-L--DKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILA  330 (489)
T ss_pred             HHHHhc-C--CHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHH
Confidence            000000 0  14556665544332  2444555566666778888865333211    1223444555666777788889


Q ss_pred             hchhHHHhcCcccceehhhhhHHhhhhhHHHHhh------hcc--cCC-CchHHHHHHHHHHHHhhhhhhhhhhHhhhcc
Q 011781          394 QFADNLIATGVETTMVRKICQTIAFLSPAVCMTL------SSI--DLG-LPHWEIVGILTAGLALSSFALSGLYCTHQDI  464 (477)
Q Consensus       394 ~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l------~~~--~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  464 (477)
                      ++.||+++|+.+.....+...  ++++.+++++.      ...  ... +.+|.+...++.+.+.....++.........
T Consensus       331 ~l~~rl~~r~~~~~~~~k~~~--G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~a  408 (489)
T PRK10207        331 GIYTHLGSKGKDLSMPMKFTL--GMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALV  408 (489)
T ss_pred             HHHHHHhhCCCCCCcHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence            999999988654443434333  22222222211      111  112 2345556677778887777777777777778


Q ss_pred             Cccchhhhhhhc
Q 011781          465 SPEYASILLYLE  476 (477)
Q Consensus       465 ~p~~~g~~~gl~  476 (477)
                      |++.+|.++|+.
T Consensus       409 P~~~~g~~~g~~  420 (489)
T PRK10207        409 PQHLMGFILGMW  420 (489)
T ss_pred             hHHHHHHHHHHH
Confidence            888899999863

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.92  E-value=4.4e-23  Score=203.36  Aligned_cols=330  Identities=11%  Similarity=0.017  Sum_probs=202.7

Q ss_pred             HHHHHHHHHHhhhhHHHHhHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHH
Q 011781          118 TTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL  196 (477)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  196 (477)
                      .+.+..++.......+.+++|. +.+++|+++.++|++.+++.++..++++++|+++||+|||+++.++..+.+++....
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~   93 (420)
T PRK09528         14 IFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPF   93 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            3344555555666666777666 455699999999999999999999999999999999999999987665554443221


Q ss_pred             HH--hhc-----hHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChh
Q 011781          197 PL--LAG-----FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWE  269 (477)
Q Consensus       197 ~~--~~~-----~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~  269 (477)
                      ..  ...     .+...++.+++.|.+.....+....+..+.  .++++..+|......++|.+++|.+++.+.+ .+|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~  170 (420)
T PRK09528         94 FIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQ  170 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCch
Confidence            11  111     111122334444444444444444443332  2456778899999999999999999999876 4899


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhH
Q 011781          270 SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGS  349 (477)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  349 (477)
                      +.|++.+++.++..+..++.+++++++....+++++.              +++......+..+|+|.+|.+.+..++..
T Consensus       171 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~l~l~~~~~~  236 (420)
T PRK09528        171 INFWLGSGSALILLVLLFFAKPDAPSTAKVANALGAN--------------ASAVSLKDALALLKLPKFWFLVLYVIGVA  236 (420)
T ss_pred             HhHHHHHHHHHHHHHHHhcccccccchhhhccchhcc--------------cccccHHHHHHHccCCCeEeehHHHHHHH
Confidence            9999988877776666555544332211100000000              00000112346778888877666555555


Q ss_pred             HHHHHHhhhhhHHHHHhh---CCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHh
Q 011781          350 WGHYTCLSWLPTYFSEEL---SLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMT  426 (477)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~---g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~  426 (477)
                      ..+.....+.|.|+.+.+   +.+....|.+.+...++..++.+++|++.||+|+|        +...... ++..+...
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~--------~~~~~~~-~l~~~~~~  307 (420)
T PRK09528        237 CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAK--------NALLLAG-TIMAVRII  307 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc--------hhhHHHH-HHHHHHHH
Confidence            555555666787776543   45667788899999999999999999999999987        3333222 22222322


Q ss_pred             hhcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhh
Q 011781          427 LSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLY  474 (477)
Q Consensus       427 l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~g  474 (477)
                      +..+ .++..+.+....+.+...............+..+++.+++..+
T Consensus       308 l~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~  354 (420)
T PRK09528        308 GSGF-ATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYL  354 (420)
T ss_pred             HHHh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeee
Confidence            2222 2233334444444454443333333333444566666776643

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.92  E-value=3.1e-22  Score=189.93  Aligned_cols=337  Identities=12%  Similarity=0.001  Sum_probs=233.7

Q ss_pred             hhhhHHHHhHHhhhhhhCCCcch-hhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHH
Q 011781          128 MDKVNLSVAIIPMSHRFGWNSSV-AGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGL  206 (477)
Q Consensus       128 ~~~~~~~~~~~~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (477)
                      -.....+...|.+.+++|++..+ .|.+.+++..+++++.++.|+++||+|.|+++.++.+.+++..++.+ +++++..+
T Consensus        40 e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~-fa~Sl~~L  118 (511)
T TIGR00806        40 QFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLL-LGTSVWHM  118 (511)
T ss_pred             HhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            34677888899999999999999 99999999999999999999999999999999999999999998886 56678999


Q ss_pred             HHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHH---HHHHHHHH
Q 011781          207 VLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIF---GLLGIAWF  283 (477)
Q Consensus       207 ~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~---~~~~~~~~  283 (477)
                      .+.|++.|++.|... +...++..++|+++|+++.|+..++..+|.+++++++++ ...+|||+.+.+.   .....+++
T Consensus       119 ~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~  196 (511)
T TIGR00806       119 QLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSV  196 (511)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHH
Confidence            999999999999999 999999999999999999999999999999999999999 5578998765543   23334456


Q ss_pred             HHHHHhccCCcCCCCCCCC--------cchhhhhhhhhhhhHHhhcc------CCCCCCHHHHhhcHHHHHHHHHHHHhH
Q 011781          284 SGFKILQEGETSNGATLAP--------RSNYINMKKSLSASLEEMGE------SLKDVPWKAIFRSKAVWAMIYAHFCGS  349 (477)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~  349 (477)
                      ++.+++|.+++.--..+.+        +.+....+.. ....+..+.      ..-...++...+||.+....+-..+..
T Consensus       197 ~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~  275 (511)
T TIGR00806       197 FLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPG-GKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNS  275 (511)
T ss_pred             HHHHhCCCCchhhhhccccccccccccccccCCCCCc-cccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHh
Confidence            6666776444311000000        0000000000 000000000      000122445567888877777777777


Q ss_pred             HHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhc
Q 011781          350 WGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSS  429 (477)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~  429 (477)
                      +++....+|......+.-+-....-|.+-++..+.+.++.+..|++-.++.+.       ....+.+..++-+.+++++.
T Consensus       276 ~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~-------~~l~l~v~s~~~~gll~~m~  348 (511)
T TIGR00806       276 AGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARW-------SKLLIAVVSAIQAGLVFWMS  348 (511)
T ss_pred             hHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhh-------HHHHHHHHHHHHHHHhhhhh
Confidence            78888777777776553231223567788888888888999999886655322       12222232233333333333


Q ss_pred             ccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhhc
Q 011781          430 IDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYLE  476 (477)
Q Consensus       430 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl~  476 (477)
                      . .++.+...+..++++..+.........-+...+..+.-|-++|++
T Consensus       349 ~-t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiN  394 (511)
T TIGR00806       349 Q-SHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGIN  394 (511)
T ss_pred             c-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecH
Confidence            2 234444456666677776666666666677777777788888874

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.92  E-value=3.8e-22  Score=180.07  Aligned_cols=317  Identities=20%  Similarity=0.200  Sum_probs=244.8

Q ss_pred             HHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhh
Q 011781          121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA  200 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~  200 (477)
                      +..+..--....+++.++.+.+++|+|.+.+|++.++..+...+.+++..++.+|+|.++.+..++++.+++.++-... 
T Consensus        19 lia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-   97 (395)
T COG2807          19 LIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-   97 (395)
T ss_pred             HHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-
Confidence            3333333567788899999999999999999999999999999999999999999999999999999999998887533 


Q ss_pred             chHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhccc-ChhHHHHHHHHHH
Q 011781          201 GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-GWESVFYIFGLLG  279 (477)
Q Consensus       201 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~-g~~~~~~~~~~~~  279 (477)
                       +.+.++....+.|.+.+.......+++-+.+| ++-+..+|+|++..++|+.+++.+.-.+.++. |||..+.+.++.+
T Consensus        98 -~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~a  175 (395)
T COG2807          98 -GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLA  175 (395)
T ss_pred             -cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHH
Confidence             45788999999999999999999999999998 78899999999999999999999999998887 7999999999999


Q ss_pred             HHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhhhh
Q 011781          280 IAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWL  359 (477)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  359 (477)
                      ++.++.++-...++.......                        +..+-..++|+|.-|.+.+.+.+....++....|+
T Consensus       176 llAl~~WlPq~~r~~~~~~~~------------------------~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WL  231 (395)
T COG2807         176 LLALLIWLPQALREQAASIAT------------------------KLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWL  231 (395)
T ss_pred             HHHHHHHhhhccccccccccc------------------------ccccccccccCchhHHHHHHHHhhHHHHHHHHHHH
Confidence            888877765432111111000                        01112468999999999999999999999999999


Q ss_pred             hHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcccCCCchHHH
Q 011781          360 PTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEI  439 (477)
Q Consensus       360 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  439 (477)
                      |.++.| .|+|..++|.+.+...+..+...+..+.+.+|..++       |...........+..+-+...+ ...++..
T Consensus       232 P~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~-------r~~~~~~~~~~l~G~~G~~~~P-~~~~~lw  302 (395)
T COG2807         232 PAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQ-------RPLVVLALLLMLVGLVGLLLAP-GQLPILW  302 (395)
T ss_pred             HHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccc-------chHHHHHHHHHHHHHHHHHHhh-hhHHHHH
Confidence            999987 699999999999999999999999999999996555       3333332222222222222232 2223322


Q ss_pred             HHHHHHHHHhhhhhhhhhhHhhhcc-Cccchhhhhhh
Q 011781          440 VGILTAGLALSSFALSGLYCTHQDI-SPEYASILLYL  475 (477)
Q Consensus       440 ~~~~~~g~~~~~~~~~~~~~~~~~~-~p~~~g~~~gl  475 (477)
                        .+++|.+.++.+......+..+. .|+..++..|+
T Consensus       303 --~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgm  337 (395)
T COG2807         303 --ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGM  337 (395)
T ss_pred             --HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHH
Confidence              46677776655555554444443 35555555544

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.91  E-value=1.2e-21  Score=193.48  Aligned_cols=341  Identities=15%  Similarity=0.138  Sum_probs=229.9

Q ss_pred             HHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHH
Q 011781          126 CNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPG  205 (477)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (477)
                      .++.....+..++.+..++|- .....|+.+...++..+..++.|+++|.+|||..++.+.++..++.++.+ .+++...
T Consensus        56 ~~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~a-tA~~~~~  133 (599)
T PF06609_consen   56 AYFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCA-TAQNMNT  133 (599)
T ss_pred             HHHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhh-cCCcHHH
Confidence            334445556667889999995 46778999999999999999999999999999999999999999998885 7888899


Q ss_pred             HHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHH
Q 011781          206 LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSG  285 (477)
Q Consensus       206 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~  285 (477)
                      ++++..+.|+|.|... .....++|..|.+.|+...++..........++|.++..+..+.+|||.|++.+++..+.++.
T Consensus       134 ~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl  212 (599)
T PF06609_consen  134 FIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVL  212 (599)
T ss_pred             HHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHH
Confidence            9999999999976665 456668999999999888877776666666678888877776779999999998887776555


Q ss_pred             HHHhccCCcCCCC--CCC-Ccchhhhhhh-------------------------hhhhhH-----------------Hhh
Q 011781          286 FKILQEGETSNGA--TLA-PRSNYINMKK-------------------------SLSASL-----------------EEM  320 (477)
Q Consensus       286 ~~~~~~~~~~~~~--~~~-~~~~~~~~~~-------------------------~~~~~~-----------------~~~  320 (477)
                      .+++..+++++..  ++. .++...+.+-                         .+.+..                 -|.
T Consensus       213 ~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~  292 (599)
T PF06609_consen  213 IFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEW  292 (599)
T ss_pred             HHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhh
Confidence            4444333332211  111 1111111000                         000000                 011


Q ss_pred             ccC-CCCCCHHHHhhc-HHHHHHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchh---hhHHHHHHHHHHHHHHHHhhhhc
Q 011781          321 GES-LKDVPWKAIFRS-KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLT---EAAWVSILPPLASVLVTSIAAQF  395 (477)
Q Consensus       321 ~~~-~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~g~~~~~~~~~~~~~~~~~g~l  395 (477)
                      ... ....--.+++|+ |.+...++..++....++....+.|......++-++.   ..++.....+++..++.++.|.+
T Consensus       293 ~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l  372 (599)
T PF06609_consen  293 FGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLL  372 (599)
T ss_pred             hccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHH
Confidence            111 111112467787 5566666777777878888888999988777776653   56777788888888999999999


Q ss_pred             hhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          396 ADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       396 ~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                      ..++++-       |..++....+..+.+-++.....++....+...++.|++.+....+......-..++++.|++.|+
T Consensus       373 ~~~ir~~-------Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL  445 (599)
T PF06609_consen  373 FSKIRHI-------KWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGL  445 (599)
T ss_pred             HHHccch-------hHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHH
Confidence            9887644       333333333333332333344444444444555566666666555554444445667779999887


Q ss_pred             c
Q 011781          476 E  476 (477)
Q Consensus       476 ~  476 (477)
                      +
T Consensus       446 ~  446 (599)
T PF06609_consen  446 T  446 (599)
T ss_pred             H
Confidence            5

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.91  E-value=2.5e-21  Score=189.00  Aligned_cols=264  Identities=11%  Similarity=0.035  Sum_probs=198.5

Q ss_pred             HHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHH--HHHHHHHHHHhhhhhhh-hhhhhcChhHHHHHHHHH-HH
Q 011781          116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLV--QSSFFWGYALSQLPGGW-LAKIFGGRKVLQTGVLIW-SL  191 (477)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~--~~~~~~~~~~~~~~~g~-l~dr~g~r~~~~~~~~~~-~~  191 (477)
                      +..+...++.++.......+.+|.+.++.|.+.+++|+.  .++..+...+.+++++. ..||+||||.+++...+. ++
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~   82 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA   82 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence            456667778888999999999999999999999999997  46678888788888854 789999999876554332 21


Q ss_pred             HHHHHHHh--h-chHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccCh
Q 011781          192 ATALLPLL--A-GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW  268 (477)
Q Consensus       192 ~~~~~~~~--~-~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~  268 (477)
                      ....+...  . .....++...++.++..+...+...++..+..++++++...+....+..+|.++|+.+.+++.+.+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw  162 (390)
T TIGR02718        83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQ  162 (390)
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence            12222111  1 21233445556666777778888888888888888888888888888899999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHh
Q 011781          269 ESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCG  348 (477)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  348 (477)
                      |..|++.+++.++..+..++++++++++++.  ++ +                   ...++++.+|+|.++...+..++.
T Consensus       163 ~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~--~~-~-------------------~~~~~~~~l~~~~~~~~~~~~~l~  220 (390)
T TIGR02718       163 RPAFLLVACVPLASLVCVLWLKDRAVASPEA--PL-A-------------------RRASLFRFFRRPLAWSLLALALLS  220 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcCcccc--ch-h-------------------hHHHHHHHHcCcCHHHHHHHHHHH
Confidence            9999999988877666655554433211100  00 0                   011246788899888888888888


Q ss_pred             HHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHH-HHHHHHHhhhhchhHHHhc
Q 011781          349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPL-ASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g~~  402 (477)
                      .........+.+.|+.| .|+++.+.|.+....++ ..+++.++.|++.||+|++
T Consensus       221 ~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~  274 (390)
T TIGR02718       221 AMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLW  274 (390)
T ss_pred             HHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            88788888899999987 69999999998888765 5667789999999999987

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=3.3e-23  Score=188.40  Aligned_cols=238  Identities=16%  Similarity=0.152  Sum_probs=209.1

Q ss_pred             hhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhccch
Q 011781          141 SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVS  220 (477)
Q Consensus       141 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  220 (477)
                      ..+.+-+.+++|++++...+...+.+++.|.+.||+|+|..+++|++++....++++ +.++++.+++.|.++|+|.+..
T Consensus        98 ~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFa-fg~sy~~l~vAR~LQgvgsA~~  176 (464)
T KOG3764|consen   98 AISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFA-FGNSYPMLFVARSLQGVGSAFA  176 (464)
T ss_pred             ccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHH-HcchhHHHHHHHHHhhhhHHHH
Confidence            344567889999999999999999999999999999999999999999999999885 7888899999999999999999


Q ss_pred             hhhHHHHhhhhcCCcc-hhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCC
Q 011781          221 PSAATDLIARSIPLEE-RSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGAT  299 (477)
Q Consensus       221 ~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (477)
                      +.+..++++|.+|+++ |++++|+...+.++|.++||++||++.+..|.+.+|++.++++++-..+.+++.++.+.++..
T Consensus       177 ~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~  256 (464)
T KOG3764|consen  177 DTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPDS  256 (464)
T ss_pred             HhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCccc
Confidence            9999999999998665 799999999999999999999999999999999999999999999887777776654433311


Q ss_pred             CCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHH
Q 011781          300 LAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSI  379 (477)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~  379 (477)
                      .                       .+..++++++++|.++.........+.........++.+..|.+..+..+.|+.+.
T Consensus       257 ~-----------------------~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fL  313 (464)
T KOG3764|consen  257 T-----------------------EQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFL  313 (464)
T ss_pred             c-----------------------ccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeec
Confidence            1                       11335689999999999888887778888888888999998888866668999999


Q ss_pred             HHHHHHHHHHHhhhhchhHHHhc
Q 011781          380 LPPLASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       380 ~~~~~~~~~~~~~g~l~dr~g~~  402 (477)
                      ...+...++..+.|.+.||+++.
T Consensus       314 p~~~~y~ig~~lfg~la~k~~~~  336 (464)
T KOG3764|consen  314 PASLSYAIGTNLFGKLADKYPHL  336 (464)
T ss_pred             ccccchhccCchHHHHHHhcCch
Confidence            99999999999999999999855

>TIGR00889 2A0110 nucleoside transporter

Probab=99.90  E-value=1.7e-21  Score=191.19  Aligned_cols=322  Identities=12%  Similarity=0.015  Sum_probs=207.0

Q ss_pred             HHHHHHHHHhhhhHHHHhHH-hhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcC-hhHHHHHHHHHHHHHHHH
Q 011781          119 TSLAFVICNMDKVNLSVAII-PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGG-RKVLQTGVLIWSLATALL  196 (477)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~~~~~~~~~~~  196 (477)
                      ++...++.+....++.+.++ .+.+++|++..++|++.+++.++..++++++|+++||+|+ |+++.++.++.++...+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~   86 (418)
T TIGR00889         7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFA   86 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            44555666666677755544 4667799999999999999999999999999999999965 777777777776666665


Q ss_pred             HHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhh--------cCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccCh
Q 011781          197 PLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARS--------IPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW  268 (477)
Q Consensus       197 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~--------~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~  268 (477)
                      . ..++++.+++.+++.|++.+...+...++....        .....|.+..|      .+|.++||.+++.+....+|
T Consensus        87 ~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~  159 (418)
T TIGR00889        87 A-QVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSN  159 (418)
T ss_pred             H-HhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchh
Confidence            4 556678888899999998877777666654322        22223444444      47889999999877433335


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHh
Q 011781          269 ESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCG  348 (477)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  348 (477)
                      . +|++.+++.++..+..+.++|+++.++++   +.+ .  .+           . .....+.++|+|.++.+.+..++.
T Consensus       160 ~-~f~~~~~~~~~~~~~~~~~~e~~~~~~~~---~~~-~--~~-----------~-~~~~~~~~~k~~~~~~~~~~~~~~  220 (418)
T TIGR00889       160 I-QLYITAGSSALLGVFALTLPDIPVAKSTA---KMS-I--KV-----------M-LGLDAFILFKNKRMAIFFFFSMLL  220 (418)
T ss_pred             H-HHHHHHHHHHHHHHHHhcCCCCCCCcccc---ccC-H--HH-----------H-hhhhHHHHhcCCCeeeHHHHHHHH
Confidence            4 45566665555555555555542211110   000 0  00           0 011235678889888887777777


Q ss_pred             HHHHHHHhhhhhHHHHHhhCCch--------hhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhh
Q 011781          349 SWGHYTCLSWLPTYFSEELSLNL--------TEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLS  420 (477)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~g~~~--------~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~  420 (477)
                      .........+++.|+.+ .|.++        ...+...+...+..+++.++.|++.||+|+|        +.+... .+.
T Consensus       221 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r--------~~l~~~-~~~  290 (418)
T TIGR00889       221 GAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK--------KVMLLS-LVA  290 (418)
T ss_pred             HhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH--------HHHHHH-HHH
Confidence            66666667788888865 56543        5668888999999999999999999999876        343333 333


Q ss_pred             hHHHHhhhcccCCCc--hH-HHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhhc
Q 011781          421 PAVCMTLSSIDLGLP--HW-EIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYLE  476 (477)
Q Consensus       421 ~~~~~~l~~~~~~~~--~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl~  476 (477)
                      .++...+........  .+ .++..++.|.+.+.........+.+..+++++|+++|+.
T Consensus       291 ~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~  349 (418)
T TIGR00889       291 WALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLF  349 (418)
T ss_pred             HHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            333322222211111  22 233445555554444433344445556677799998864

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.89  E-value=3.3e-21  Score=191.32  Aligned_cols=317  Identities=12%  Similarity=0.102  Sum_probs=208.5

Q ss_pred             hhhhHHHHh-HHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhh----hcChh-HHHHHHHHHHHHHHHHHHhhc
Q 011781          128 MDKVNLSVA-IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI----FGGRK-VLQTGVLIWSLATALLPLLAG  201 (477)
Q Consensus       128 ~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~g~r~-~~~~~~~~~~~~~~~~~~~~~  201 (477)
                      .....+..+ .+.+.+++|+++.++|++.++..+..++..++.|+++||    +|||| .++.+....+++.+++. ..+
T Consensus        13 ~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~-~~~   91 (437)
T TIGR00792        13 FIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF-TTP   91 (437)
T ss_pred             HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH-hCC
Confidence            334444444 555778899999999999999999999999999999998    67755 56667677666666553 332


Q ss_pred             h------HHHHHHHHHHHHhhccchhhhHHHHhhhhc-CCcchhhHHHHHHhhhhhHHHHHHhhhHHhhc-------ccC
Q 011781          202 F------MPGLVLSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-------NLG  267 (477)
Q Consensus       202 ~------~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~-------~~g  267 (477)
                      +      ...+++.+++.+++.+...+...++..+.. ++++|++..++.+.+..+|..+++.+.+.+..       ..+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g  171 (437)
T TIGR00792        92 DFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFG  171 (437)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence            2      345667778888888887788888888887 56889999999999888988887776665542       458


Q ss_pred             hhHHHHHHHHHHHHHHHHHHH-hccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHH
Q 011781          268 WESVFYIFGLLGIAWFSGFKI-LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF  346 (477)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  346 (477)
                      |++.+++.+++.++..+..++ .+|++++.+.+   +++...                ....++.++++|.++..++..+
T Consensus       172 ~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~---~~~~~~----------------~~~~~~~l~~~~~~~~~~~~~~  232 (437)
T TIGR00792       172 WFMFALVLALIGVVSLIICFFGTKERYSEIPKN---IEKKLS----------------LKQIFKALFKNDQLLILCLAYL  232 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcc---cccCCC----------------HHHHHHHHhCCHHHHHHHHHHH
Confidence            999999988887776555433 34332110000   000000                0112467888999998888887


Q ss_pred             HhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHh
Q 011781          347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMT  426 (477)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~  426 (477)
                      +..........+.+.|.+..++ +....+.+.....++.+++.+++++++||+|+|        +..... .+..++...
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~--------~~~~~~-~~~~~~~~~  302 (437)
T TIGR00792       233 FYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK--------ILFAGG-ILLMVLGYL  302 (437)
T ss_pred             HHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH--------HHHHHH-HHHHHHHHH
Confidence            7777777666666666655555 455667777788899999999999999999876        333332 222222222


Q ss_pred             hhcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccC--------ccchhhhhhh
Q 011781          427 LSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDIS--------PEYASILLYL  475 (477)
Q Consensus       427 l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------p~~~g~~~gl  475 (477)
                      +......+.....+..++.+++.+... +..+.+..+..        ++++|+++|+
T Consensus       303 ~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  358 (437)
T TIGR00792       303 IFFFAGSNLPLILVLIILAGFGQNFVT-GLVWALVADTVDYGEWKTGVRAEGLVYSV  358 (437)
T ss_pred             HHHHcchhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhhcCccchHHHHHH
Confidence            222222222233334444455544443 44555544442        3457887775

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.89  E-value=3.6e-21  Score=174.13  Aligned_cols=321  Identities=15%  Similarity=0.049  Sum_probs=199.9

Q ss_pred             hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhccc
Q 011781          140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGV  219 (477)
Q Consensus       140 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  219 (477)
                      ..+..+.+....|++.+.+.+...+.++.+|.++||+|||.++.++....++..++. ..+.++..+++.|++.|+.-+-
T Consensus        59 ~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~-~~S~~F~afv~aR~l~Gi~kgn  137 (451)
T KOG2615|consen   59 IGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLW-ALSRNFAAFVLARFLGGIFKGN  137 (451)
T ss_pred             hCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhccCc
Confidence            344445566778999999999999999999999999999999999999988877776 4788876677779999999765


Q ss_pred             hhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhc---ccChhHHHH---HHHHHHHH-HHHHHHHhccC
Q 011781          220 SPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE---NLGWESVFY---IFGLLGIA-WFSGFKILQEG  292 (477)
Q Consensus       220 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~---~~g~~~~~~---~~~~~~~~-~~~~~~~~~~~  292 (477)
                      . ....++++|.+++++|+++++......++|.++||.+||++.+   ..|-.+.++   +..+++.. .....++++|+
T Consensus       138 l-~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpET  216 (451)
T KOG2615|consen  138 L-SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPET  216 (451)
T ss_pred             h-HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            4 6788999999999999999999999999999999999999987   233222222   11122222 33445566666


Q ss_pred             CcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHH-------HHHHHHHHHhHHHHHHHhhhhhHHHHH
Q 011781          293 ETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAV-------WAMIYAHFCGSWGHYTCLSWLPTYFSE  365 (477)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~  365 (477)
                      -+.+++. ++... .  .+...+. ++..+ .....-..+++|+..       ..+.+-.+.+...+..+..+.+.+..+
T Consensus       217 L~~rk~~-~~~~~-~--~~~~~~~-~~~~~-~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~  290 (451)
T KOG2615|consen  217 LPLRKRN-DEHST-L--QEAADDR-LALLK-FARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHG  290 (451)
T ss_pred             ccchhhc-ccccc-h--hhhhhhh-hhhcc-hhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcC
Confidence            4443333 11000 0  0000001 00000 001011123333322       122333344444444455555555456


Q ss_pred             hhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcccCCCchHHHHHHHHH
Q 011781          366 ELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTA  445 (477)
Q Consensus       366 ~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  445 (477)
                      .+|+++.+.|.+++..++.+.+......+..+|....       .+......+....-.+++... ...+..+..+..+.
T Consensus       291 rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~-------~~a~l~~~l~~~vP~~llls~-~~~~~~l~~~s~l~  362 (451)
T KOG2615|consen  291 RFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGN-------IKAVLLFSLLLIVPAFLLLSL-ARTPVVLYLGSTLK  362 (451)
T ss_pred             ccCCChhhheeeeehhhHHHHHHHHhccccccccccc-------hhhHHHHHHHHHHHHHHHHhc-cccchhhhHHHHHH
Confidence            7899999999999999999999988888888886421       112222222222212222222 23444555555555


Q ss_pred             HHHhhhhhhhhhhHhhhccCccchhhhhhhc
Q 011781          446 GLALSSFALSGLYCTHQDISPEYASILLYLE  476 (477)
Q Consensus       446 g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl~  476 (477)
                      .+..+...+..........++++||+++|+.
T Consensus       363 sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~  393 (451)
T KOG2615|consen  363 SFSTASVVTCLTSLVHKYGPQSQRGTLNGIF  393 (451)
T ss_pred             HHHHHHhhHHHHHHHHhcCCcccchHHHHHH
Confidence            5554444433444444445667799999974

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.88  E-value=6.6e-20  Score=183.49  Aligned_cols=168  Identities=15%  Similarity=0.204  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHHHhhhhHHHHhHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhh-hcChhHHHHHHHHHHHHH
Q 011781          116 IGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIWSLAT  193 (477)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~  193 (477)
                      +..++...+...+........++. +.+++|++..+.+++.+.+........+++|+++|| +|||+.+..+.++.+++.
T Consensus        23 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~  102 (500)
T PRK09584         23 FYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGY  102 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            344555555565665556555555 568899999999888888776666667899999999 599999999999998888


Q ss_pred             HHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcc--hhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHH
Q 011781          194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEE--RSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (477)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~  271 (477)
                      .++....+..+.+++.+++.|++.+...+...+++.+++|+++  |+.++++++.+.++|.++||.++|++.+++|||+.
T Consensus       103 ~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~  182 (500)
T PRK09584        103 ALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVA  182 (500)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHH
Confidence            7775433445667788999999999999999999999997543  45678899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 011781          272 FYIFGLLGIAWF  283 (477)
Q Consensus       272 ~~~~~~~~~~~~  283 (477)
                      |++.++..++..
T Consensus       183 F~i~~i~~~i~~  194 (500)
T PRK09584        183 FALSVVGMLITV  194 (500)
T ss_pred             HHHHHHHHHHHH
Confidence            999876554443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.88  E-value=3.8e-20  Score=178.40  Aligned_cols=317  Identities=15%  Similarity=0.141  Sum_probs=217.0

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHH--HhhchHHHHHHHHHHHHhhccchhhhHHHHh
Q 011781          151 AGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP--LLAGFMPGLVLSRVLVGIGEGVSPSAATDLI  228 (477)
Q Consensus       151 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i  228 (477)
                      .+.+.+++.+|.++|++..++++||+|||..+.++.++..++.++..  ...+.+..++++|++.|+..+........++
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl  141 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL  141 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            46677899999999999999999999999999888776666554442  3457788999999999999999999999999


Q ss_pred             hhhcCCcchhhHHHHHHhhhhhHHHHHHhhhH-Hhh-cccChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcc--
Q 011781          229 ARSIPLEERSRAVSFVFGGLSFGSVAGLLLAP-PII-ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRS--  304 (477)
Q Consensus       229 ~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~-~l~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  304 (477)
                      .|..|++.||....+...+..+|..++..++. .+. +.-.|++.+.+..+.+++..+...++||+++.--.++.+++  
T Consensus       142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A  221 (485)
T KOG0569|consen  142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEA  221 (485)
T ss_pred             hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHH
Confidence            99999999999999999999999999966654 333 34569999999999999999999999998875433111111  


Q ss_pred             -hhhhhhhhhh-------h---h-HHhhccCCCCCCHHHHhhcHHHHHHHHH-----HHHhHHHHHHHhhhhhHHHHHhh
Q 011781          305 -NYINMKKSLS-------A---S-LEEMGESLKDVPWKAIFRSKAVWAMIYA-----HFCGSWGHYTCLSWLPTYFSEEL  367 (477)
Q Consensus       305 -~~~~~~~~~~-------~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~  367 (477)
                       +..+.-++..       .   . .++..++.+..+++++++++....-...     ..-...+......|...++.+ .
T Consensus       222 ~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~-a  300 (485)
T KOG0569|consen  222 RKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKT-A  300 (485)
T ss_pred             HHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHH-c
Confidence             1111111111       0   1 1111222255678899988665443222     222233344555666666654 7


Q ss_pred             CCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcc--cCCCc-h----HHHH
Q 011781          368 SLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSI--DLGLP-H----WEIV  440 (477)
Q Consensus       368 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~--~~~~~-~----~~~~  440 (477)
                      |++...+.+.....++..++..+++.++.||+|||        ..++..........+++...  ..... .    ..+.
T Consensus       301 G~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRR--------pLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~  372 (485)
T KOG0569|consen  301 GFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRR--------PLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIA  372 (485)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            99999999999999999999999999999999987        33333222222222221111  01111 1    1234


Q ss_pred             HHHHHHHHhhhhhhhhhhHhhhccC-ccchhhhhhhc
Q 011781          441 GILTAGLALSSFALSGLYCTHQDIS-PEYASILLYLE  476 (477)
Q Consensus       441 ~~~~~g~~~~~~~~~~~~~~~~~~~-p~~~g~~~gl~  476 (477)
                      +.++...+++....|..+.+..++. ++.|..++++.
T Consensus       373 ~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~  409 (485)
T KOG0569|consen  373 AIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVA  409 (485)
T ss_pred             HHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHH
Confidence            4455555555555667777777755 55588887653

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.88  E-value=4.1e-20  Score=186.32  Aligned_cols=316  Identities=18%  Similarity=0.161  Sum_probs=208.5

Q ss_pred             hhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhh
Q 011781          150 VAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIA  229 (477)
Q Consensus       150 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~  229 (477)
                      +.+++.+...++..+++++.|+++|++|||+.++++.+++.++.++.+ .+++++.++++|++.|+|.|........+++
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~-~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s  168 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIA-LAPSWYQLIVGRILTGLGVGGASVLAPVYIS  168 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence            458999999999999999999999999999999999999999999885 7778899999999999999999999999999


Q ss_pred             hhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcc-cChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcc--hh
Q 011781          230 RSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRS--NY  306 (477)
Q Consensus       230 ~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  306 (477)
                      |..|++.||...+..+....+|..++..++....+. .+||..+.+..+.+++..+..+++||.++.-.+.....+  +.
T Consensus       169 Eiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~  248 (513)
T KOG0254|consen  169 EIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRS  248 (513)
T ss_pred             hcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHH
Confidence            999999999999999999999999985544444322 489999999888888887777777766543322111111  10


Q ss_pred             hhhhhh-----hhhhH--------HhhccCCCCCCHHHHhh----cHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHhhCC
Q 011781          307 INMKKS-----LSASL--------EEMGESLKDVPWKAIFR----SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSL  369 (477)
Q Consensus       307 ~~~~~~-----~~~~~--------~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~  369 (477)
                      ......     .....        .+......+..+..+++    ++.++...+..+....+......|.+.+++. .|.
T Consensus       249 l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~-~g~  327 (513)
T KOG0254|consen  249 LKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKS-AGL  327 (513)
T ss_pred             HHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHh-cCC
Confidence            000000     00000        00001111112333332    3344455566666666677788888888865 576


Q ss_pred             chhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcc--c--------CCCchHHH
Q 011781          370 NLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSI--D--------LGLPHWEI  439 (477)
Q Consensus       370 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~--~--------~~~~~~~~  439 (477)
                      +... .......++..+++..++..+.||+|||        +.++..........+++...  .        .....+.+
T Consensus       328 ~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr--------~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (513)
T KOG0254|consen  328 KSDT-FLASIILGVVNFLGTLVATYLVDRFGRR--------KLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAI  398 (513)
T ss_pred             CCch-HHHHHHHHHHHHHHHHHHHHHHHHhccH--------HHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHH
Confidence            6443 4556667777888888889999999877        33332222222222211111  0        01122333


Q ss_pred             HHHHHHHHHhhhhhhhhhhHhhhccCccc-hhhhhhhc
Q 011781          440 VGILTAGLALSSFALSGLYCTHQDISPEY-ASILLYLE  476 (477)
Q Consensus       440 ~~~~~~g~~~~~~~~~~~~~~~~~~~p~~-~g~~~gl~  476 (477)
                      +...+.-..+.....+..+.+..+..|.+ |+++.++.
T Consensus       399 ~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~  436 (513)
T KOG0254|consen  399 VFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLA  436 (513)
T ss_pred             HHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHH
Confidence            33444444445555566666666665544 77776653

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.86  E-value=1.9e-18  Score=169.49  Aligned_cols=356  Identities=14%  Similarity=0.113  Sum_probs=209.5

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhh-cChhHHHHHHHHHHH
Q 011781          114 KLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-GGRKVLQTGVLIWSL  191 (477)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~  191 (477)
                      +-+..++...+...+.......++|. +.+++|+++.+.+.+.+.+.....++++++|+++||+ |||+.+.++.++.++
T Consensus         9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~l   88 (493)
T PRK15462          9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAI   88 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Confidence            44444455555555566666666665 4667899999999999999999999999999999999 999999999999888


Q ss_pred             HHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCc--chhhHHHHHHhhhhhHHHHHHhhhHHhhcccChh
Q 011781          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE--ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWE  269 (477)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~  269 (477)
                      +.+++.....+...+++...+.+++.+...+...++++|.+|++  +|..++++.+.+.++|+.++|.+.+++.+..||+
T Consensus        89 g~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~  168 (493)
T PRK15462         89 GHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWA  168 (493)
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChH
Confidence            87665422222233444444555666777788889999999875  6999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCcCC---CCCCCCcchhhhh---------------hhh-hhhhH-H-----------
Q 011781          270 SVFYIFGLLGIAWFSGFKILQEGETSN---GATLAPRSNYINM---------------KKS-LSASL-E-----------  318 (477)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---------------~~~-~~~~~-~-----------  318 (477)
                      +.|.+.++..++.++.+....+...+.   ++++.++++....               ... ..+.. .           
T Consensus       169 ~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (493)
T PRK15462        169 MGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGL  248 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999987765544444433322211111   0111100000000               000 00000 0           


Q ss_pred             ----hhccCCCCCCHHHHhhcH--HHHHHHHHHHHhHHHHHHHhhhhhHHHHHhh-----CCchhhhHHHHHHHHHHHHH
Q 011781          319 ----EMGESLKDVPWKAIFRSK--AVWAMIYAHFCGSWGHYTCLSWLPTYFSEEL-----SLNLTEAAWVSILPPLASVL  387 (477)
Q Consensus       319 ----~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~~~~g~~~~~~~~~~~~  387 (477)
                          .....  +.+  +.=|+|  .+..+++...++...+....+-+..|..+..     |++ ...++..+...+..++
T Consensus       249 ~~~~~~~~~--~~~--~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~  323 (493)
T PRK15462        249 GVLAKIYRK--AEN--QKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVML  323 (493)
T ss_pred             HHHHHHHHh--cCC--HHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHH
Confidence                00000  000  000111  1223334444444555555566666665532     222 2255677888888787


Q ss_pred             HHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhh-c--ccC---CCchHHHHHHHHHHHHhhhhhhhhhhHhh
Q 011781          388 VTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLS-S--IDL---GLPHWEIVGILTAGLALSSFALSGLYCTH  461 (477)
Q Consensus       388 ~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~-~--~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  461 (477)
                      ..++.+++=.|..+|++....+.|......+...+...+.. .  ...   .+..|+++..++...+ ..+..|...+..
T Consensus       324 l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~g-El~~sPvgls~~  402 (493)
T PRK15462        324 CGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFA-ELFIDPVAMSQI  402 (493)
T ss_pred             HHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHH-HHHHChHHHHHH
Confidence            77777777666654433333334443333222222212211 1  111   2345555555556555 445556666666


Q ss_pred             hccCccc-hhhhhhh
Q 011781          462 QDISPEY-ASILLYL  475 (477)
Q Consensus       462 ~~~~p~~-~g~~~gl  475 (477)
                      .++.|++ +|+.+|+
T Consensus       403 ~~laP~~~~g~~mg~  417 (493)
T PRK15462        403 TRIEIPGVTGVLTGI  417 (493)
T ss_pred             HHhChHHHHHHHHHH
Confidence            6666655 9999986

>PTZ00207 hypothetical protein; Provisional

Probab=99.85  E-value=1.6e-18  Score=172.72  Aligned_cols=338  Identities=12%  Similarity=0.098  Sum_probs=227.0

Q ss_pred             hhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhh-----ch
Q 011781          128 MDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA-----GF  202 (477)
Q Consensus       128 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----~~  202 (477)
                      .....++.+.+.+.+++|++..+++++.++. ....+++++.|++.||+|+|+++.++.++++++.+++++..     .+
T Consensus        41 g~~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s  119 (591)
T PTZ00207         41 SFMYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGS  119 (591)
T ss_pred             HHHHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCc
Confidence            3345666778889999999999999998874 44556788899999999999999999999999998886431     46


Q ss_pred             HHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHH-HHhhhHHhhcccChhHHHHHHHHHHHH
Q 011781          203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVA-GLLLAPPIIENLGWESVFYIFGLLGIA  281 (477)
Q Consensus       203 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i-g~~~~~~l~~~~g~~~~~~~~~~~~~~  281 (477)
                      ++.+++.|++.|+|.+...+.....+.+++| ++||++.|+...+.++|.++ +++..+++.  .+|++.|++.+++.++
T Consensus       120 ~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~v  196 (591)
T PTZ00207        120 VVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALV  196 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999997 78999999999999999976 454454443  3688889988888877


Q ss_pred             HHHHHHHhccCCcCCCC---C--CCCcchh------------------h------------------------hhhh---
Q 011781          282 WFSGFKILQEGETSNGA---T--LAPRSNY------------------I------------------------NMKK---  311 (477)
Q Consensus       282 ~~~~~~~~~~~~~~~~~---~--~~~~~~~------------------~------------------------~~~~---  311 (477)
                      ..++...+.++++....   +  .+++++.                  .                        ...+   
T Consensus       197 v~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~  276 (591)
T PTZ00207        197 VGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFK  276 (591)
T ss_pred             HHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence            66655554443332111   0  0111110                  0                        0000   


Q ss_pred             ------hh---------------------h-h-h--H------------Hh-------hc-c-CCCCCCHHHHhhcHHHH
Q 011781          312 ------SL---------------------S-A-S--L------------EE-------MG-E-SLKDVPWKAIFRSKAVW  339 (477)
Q Consensus       312 ------~~---------------------~-~-~--~------------~~-------~~-~-~~~~~~~~~~~~~~~~~  339 (477)
                            ..                     + + +  .            ++       .+ . .....++.+.+++..+|
T Consensus       277 ~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~W  356 (591)
T PTZ00207        277 VGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLW  356 (591)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHH
Confidence                  00                     0 0 0  0            00       00 0 00112677888899999


Q ss_pred             HHHHHHHHhHHHHHHHhhhhhHHHHHhh-CCchhh--hHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHH
Q 011781          340 AMIYAHFCGSWGHYTCLSWLPTYFSEEL-SLNLTE--AAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTI  416 (477)
Q Consensus       340 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~  416 (477)
                      .+++..++...........+....+. + |.+...  ...+.++.++.+.+|++..|.+.....+|+...+.+|...+.+
T Consensus       357 ll~~~~~cg~g~gl~~~~N~~qI~~s-l~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~  435 (591)
T PTZ00207        357 CLLWSIFCCVGAHFVIIFNARFIYTA-LAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFI  435 (591)
T ss_pred             HHHHHHHHhhCchheeeecHHHHHHH-hcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHH
Confidence            99999999988888888888888865 5 663322  2227789999999999999999844444432223345555555


Q ss_pred             hhhhhHHHHhhhcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhh
Q 011781          417 AFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILL  473 (477)
Q Consensus       417 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~  473 (477)
                      ..+ ..+..+++....+. ..+.+..+++|++.+... +....+..++..++-|+..
T Consensus       436 ~~~-~~~~~lll~~~~p~-~~L~~~~~lvg~~~G~~~-~~~~~i~selFgk~~g~~y  489 (591)
T PTZ00207        436 PSV-CIITMLTLFLTLPK-AALPLPYFIAAFANGFMA-ATIALVTRTIFAKDPAKHY  489 (591)
T ss_pred             HHH-HHHHHHHHHHHCCc-cHhHHHHHHHHHHhhHhH-HHHHHHHHHHhccchHHHh
Confidence            555 33333333332221 355667777777766555 4444444554437766643

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.84  E-value=2.6e-19  Score=181.40  Aligned_cols=318  Identities=15%  Similarity=0.065  Sum_probs=205.4

Q ss_pred             hhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhccch
Q 011781          141 SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVS  220 (477)
Q Consensus       141 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  220 (477)
                      .+.++.+.....+..+++.+|..+|++++|.++||+|||++++++.++..++.+.. .++++++.+++.|++.|++.++.
T Consensus       110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~-a~a~~~~~~~~~Rfl~G~~~~~~  188 (521)
T KOG0255|consen  110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILT-AFAPNYWMFLIFRFLSGFFGSGP  188 (521)
T ss_pred             hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHH-HHhCcHHHHHHHHHHHHhhccch
Confidence            35567788889999999999999999999999999999999999999998888776 58899999999999999999999


Q ss_pred             hhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCC
Q 011781          221 PSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATL  300 (477)
Q Consensus       221 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (477)
                      ......++.|++++++|+.+..+ ......++.+++..++++..  +||+.+++..+..++.++..++.+|.++....+.
T Consensus       189 ~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g  265 (521)
T KOG0255|consen  189 LTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKG  265 (521)
T ss_pred             hHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcC
Confidence            99999999999999999999999 88888888999999998887  8999999999988887777555556654332222


Q ss_pred             CCcchhhhhhh---------hh----hh--hHHh--hccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHH
Q 011781          301 APRSNYINMKK---------SL----SA--SLEE--MGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYF  363 (477)
Q Consensus       301 ~~~~~~~~~~~---------~~----~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  363 (477)
                      +.++.....++         ..    ..  ..+.  .....+...+..+++.|.+....+...+..+.......-++...
T Consensus       266 ~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~  345 (521)
T KOG0255|consen  266 RIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNV  345 (521)
T ss_pred             chHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhh
Confidence            11111110000         00    00  0000  11111224567888887655544444444433332222233333


Q ss_pred             HHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcccCCCch-HHHHHH
Q 011781          364 SEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPH-WEIVGI  442 (477)
Q Consensus       364 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~  442 (477)
                       ..+|.+..   ......+.....+....+...|++|||         .....+.....+++++......... ++...+
T Consensus       346 -~~lg~~~~---~~~~~~~~~~~p~~~~~~~~~~~~gR~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (521)
T KOG0255|consen  346 -SGLGGNIY---LNFTLSGLVELPAYFRNGLLLPEFGRR---------PPLFLSLFLAGIGLLLFGWLPDDLGGWLHWIL  412 (521)
T ss_pred             -hhcCchHH---HHHHHHHHHHhhHHHHHHHHHHHhCcH---------HHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence             23444433   333444447777777778899999765         3334444444444433333222222 233333


Q ss_pred             HHHHHHhhhhhhhhhhHhhhcc-Cccchhhhhhh
Q 011781          443 LTAGLALSSFALSGLYCTHQDI-SPEYASILLYL  475 (477)
Q Consensus       443 ~~~g~~~~~~~~~~~~~~~~~~-~p~~~g~~~gl  475 (477)
                      .+++.+..............+. +...|+.+.|.
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~  446 (521)
T KOG0255|consen  413 PLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGA  446 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            3334333333333334445554 44447766654

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.84  E-value=3.5e-18  Score=164.87  Aligned_cols=326  Identities=15%  Similarity=0.094  Sum_probs=225.8

Q ss_pred             HHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhc-ChhHHHHHHHHHHHHHHHHH
Q 011781          119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFG-GRKVLQTGVLIWSLATALLP  197 (477)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g-~r~~~~~~~~~~~~~~~~~~  197 (477)
                      +...+++.+.....+.++.+.+.++.|+|..|+|.+.++..+..+++++++|.++||.+ +|+.+.+..++.++..... 
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~-   85 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL-   85 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH-
Confidence            34455666677778888899999999999999999999999999999999999999986 4666666666655555444 


Q ss_pred             HhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhh-HHhhcccC---hhHHHH
Q 011781          198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA-PPIIENLG---WESVFY  273 (477)
Q Consensus       198 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~-~~l~~~~g---~~~~~~  273 (477)
                      ...++++.+++..++..+......|...++..+...  +++.-.|-....+++|.+++.... +.+....+   ..+.++
T Consensus        86 ~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~  163 (400)
T PF03825_consen   86 AFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFY  163 (400)
T ss_pred             HHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHH
Confidence            355667778888888888888888999998888875  455667778888888888775542 33333322   334566


Q ss_pred             HHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHH
Q 011781          274 IFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHY  353 (477)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  353 (477)
                      +.+++.++.....+.+|+.++++..+...++.                   ...+..+++|+|+++.+.+..++......
T Consensus       164 i~~~~~~ll~~~~l~lp~~~~~~~~~~~~~~~-------------------~~~~~~~llk~~~~~~Fll~~~l~~~~~~  224 (400)
T PF03825_consen  164 IAAILSLLLAGFALFLPKTPPKRSAKESVKKL-------------------LGLDALKLLKNPRFLVFLLAAFLIGISHA  224 (400)
T ss_pred             HHHHHHHHHHHHHHhCCCCccccccCCCcccc-------------------cchHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            66655555555555566554222111111100                   01122478999999999999999999999


Q ss_pred             HHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcccCC
Q 011781          354 TCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLG  433 (477)
Q Consensus       354 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~  433 (477)
                      ....+.+.|+++.-|.+....+.+.++..++.++.....+++.+|+|.+        +.+. ++.+..++=..+.....+
T Consensus       225 ~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~--------~ll~-~a~~~~~vR~~l~a~~~~  295 (400)
T PF03825_consen  225 AYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIK--------WLLL-LALVAYAVRWLLYAYFSD  295 (400)
T ss_pred             HHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--------HHHH-HHHHHHHHHHHHHHHhcC
Confidence            9999999999875337778888888888899999999999999999876        3433 333333333333322212


Q ss_pred             CchHHHHHH----HHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          434 LPHWEIVGI----LTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       434 ~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                      +.++.....    .+-|..++.+.......+....|++.++++.|+
T Consensus       296 ~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l  341 (400)
T PF03825_consen  296 PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGL  341 (400)
T ss_pred             CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHH
Confidence            222222222    346777777776666666666777778988876

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.83  E-value=5.6e-18  Score=165.47  Aligned_cols=337  Identities=11%  Similarity=0.083  Sum_probs=215.1

Q ss_pred             HHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhh----hhcChhHHHHH-HHHHHHH
Q 011781          118 TTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK----IFGGRKVLQTG-VLIWSLA  192 (477)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~~-~~~~~~~  192 (477)
                      .++...+-..+.........+.+.+++|.+....+++..+..+...+.+++.|+++|    |+|||+.++++ .....++
T Consensus         8 ~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~   87 (477)
T TIGR01301         8 RVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFA   87 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHH
Confidence            334444455566777777788888999999999999999999999999999999999    59999998875 4444444


Q ss_pred             HHHHHHhhchH-----------------HHHHHHHHHHHhhccchhhhHHHHhhhhcCCcch--hhHHHHHHhhhhhHHH
Q 011781          193 TALLPLLAGFM-----------------PGLVLSRVLVGIGEGVSPSAATDLIARSIPLEER--SRAVSFVFGGLSFGSV  253 (477)
Q Consensus       193 ~~~~~~~~~~~-----------------~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~  253 (477)
                      .++++ .+.+.                 +..++...+..++.....+...++++|..|+++|  +.++++.+...++|.+
T Consensus        88 l~ll~-~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~i  166 (477)
T TIGR01301        88 VILIG-FAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNV  166 (477)
T ss_pred             HHHHH-hCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHH
Confidence            44443 33322                 2233334455567777888899999999998765  6799999999999999


Q ss_pred             HHHhhhHHh--hccc-------------ChhHHHHHHHHHHHHHHHHHHH-hccCCcCCCCCCCCcchhhhhhhhhhhhH
Q 011781          254 AGLLLAPPI--IENL-------------GWESVFYIFGLLGIAWFSGFKI-LQEGETSNGATLAPRSNYINMKKSLSASL  317 (477)
Q Consensus       254 ig~~~~~~l--~~~~-------------g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (477)
                      +|+.++++.  .+.+             +.++.|++.+++.++..++..+ .+|.+....++..++ +. +         
T Consensus       167 lg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~-~~-~---------  235 (477)
T TIGR01301       167 LGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS-EA-A---------  235 (477)
T ss_pred             HHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh-hc-c---------
Confidence            999999875  2211             5788999888777766555444 455433211110000 00 0         


Q ss_pred             HhhccCCCCCCHHHHhh-----cHHHHHHHHHHHHhHHHHHHHhhhhhHHHHH-hhCCchh------h----hHHHHHHH
Q 011781          318 EEMGESLKDVPWKAIFR-----SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSE-ELSLNLT------E----AAWVSILP  381 (477)
Q Consensus       318 ~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~------~----~g~~~~~~  381 (477)
                       +.++......++++++     .|.++.+++..++..++++.+..|.+.|+.+ .++.++.      +    ..+.....
T Consensus       236 -~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~  314 (477)
T TIGR01301       236 -PPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLN  314 (477)
T ss_pred             -cccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHH
Confidence             0000000112233333     3778999999999999999999999998864 4554321      1    12334445


Q ss_pred             HHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcc-cC-----------------CC--chHHHHH
Q 011781          382 PLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSI-DL-----------------GL--PHWEIVG  441 (477)
Q Consensus       382 ~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~-~~-----------------~~--~~~~~~~  441 (477)
                      .+...+..++..++.+|+|+|        +..-.++.++.++++....+ ..                 ..  ....++.
T Consensus       315 s~~~~i~s~~l~~l~~~~g~~--------k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  386 (477)
T TIGR01301       315 SVVLGITSIGMEKLCRGWGAG--------KRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIV  386 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhccc--------hhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHH
Confidence            555567777778888888754        23323333333333332221 10                 00  1445566


Q ss_pred             HHHHHHHhhhhhhhhhhHhhhccCc--cchhhhhhh
Q 011781          442 ILTAGLALSSFALSGLYCTHQDISP--EYASILLYL  475 (477)
Q Consensus       442 ~~~~g~~~~~~~~~~~~~~~~~~~p--~~~g~~~gl  475 (477)
                      +.++|+..+......+..+.+..++  ++.|..+|+
T Consensus       387 ~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgi  422 (477)
T TIGR01301       387 FAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGV  422 (477)
T ss_pred             HHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhH
Confidence            6777888777776666666666663  345777775

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.82  E-value=1.7e-20  Score=162.69  Aligned_cols=336  Identities=13%  Similarity=0.102  Sum_probs=224.2

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhh-hcChhHHHHHHHHHHHH
Q 011781          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIWSLA  192 (477)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~  192 (477)
                      ..+..+|+..|-.+++...-+....++..+.+++.++..++.+++....++.++++|++.|| +|.|..-++-.....++
T Consensus        44 m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~G  123 (459)
T KOG4686|consen   44 MALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLG  123 (459)
T ss_pred             HHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHH
Confidence            34444555555555666666666777888889999999999999999999999999999997 68776655555555566


Q ss_pred             HHHHH--HhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccCh--
Q 011781          193 TALLP--LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW--  268 (477)
Q Consensus       193 ~~~~~--~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~--  268 (477)
                      .++++  ...+.+|.+.+.||+.|+|.-....+.+.++..++..++.+.++|+..+...+|..+--.+.+++.+..+-  
T Consensus       124 qliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~  203 (459)
T KOG4686|consen  124 QLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMF  203 (459)
T ss_pred             HHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhc
Confidence            65543  34677899999999999998888899999999999999999999999999999999888888888775431  


Q ss_pred             ----hHHH---HHHHHH-HHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHH
Q 011781          269 ----ESVF---YIFGLL-GIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWA  340 (477)
Q Consensus       269 ----~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (477)
                          +...   ...+.. +...++....+--.+.+.+       +....+++...      +..+..+. . --.|.+|.
T Consensus       204 ~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAe-------rilh~e~g~~G------e~pkLtdv-~-~f~ppfw~  268 (459)
T KOG4686|consen  204 PGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAE-------RILHLEEGFLG------EEPKLTDV-N-TFYPPFWV  268 (459)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH-------HHHhhhcCccc------CCcccccc-c-ccCccHHH
Confidence                1111   111111 1111111111110000000       00000000000      00000000 0 11478999


Q ss_pred             HHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhh
Q 011781          341 MIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLS  420 (477)
Q Consensus       341 ~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~  420 (477)
                      +.+.+++++.+.+.+.+.-|.++++++|+++..++.+.+.....+.+...+.|.++||+|++        .+....+.+.
T Consensus       269 ~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n--------~~wv~~a~~~  340 (459)
T KOG4686|consen  269 LVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFN--------LWWVASACIL  340 (459)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcce--------ehhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999987        3333444443


Q ss_pred             hHHHHhhhcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCc-cchhhhhhhc
Q 011781          421 PAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISP-EYASILLYLE  476 (477)
Q Consensus       421 ~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p-~~~g~~~gl~  476 (477)
                      ..+.-....+.. ..+|  +.+.++|....... ...|.....+.| ++.|+++|.+
T Consensus       341 tl~~H~~l~Ft~-lsPy--~~m~~lGLsysllA-cslWP~va~~vpE~qLGTaygf~  393 (459)
T KOG4686|consen  341 TLLGHSGLFFTF-LSPY--TSMTFLGLSYSLLA-CSLWPCVASLVPEEQLGTAYGFI  393 (459)
T ss_pred             HHHHhhhHHhhh-ccHH--HHHHHHhhhHHHHH-HHHhhhhhhhCCHHHhcchHHHH
Confidence            333333333322 2233  34555566544443 334444555444 4599998863

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.82  E-value=1.5e-17  Score=149.90  Aligned_cols=182  Identities=18%  Similarity=0.192  Sum_probs=154.3

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHH
Q 011781          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (477)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (477)
                      ++..............+-........|.+....|.+..+..++......+..+++..+|.++|++|||+.+.+..+..++
T Consensus        76 q~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v  155 (528)
T KOG0253|consen   76 QWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGV  155 (528)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHH
Confidence            45666666666655555556666667778888899999999999999999999999999999999999999998887777


Q ss_pred             HHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHH
Q 011781          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (477)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~  271 (477)
                      ...+- ..++++..+++.|.+.|+|.|+ .|...++-.+..|..+|..-+-+. ..+.+|.++...++-....++||||.
T Consensus       156 ~~~is-~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~  232 (528)
T KOG0253|consen  156 FGVIS-GASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYL  232 (528)
T ss_pred             HHHhh-cCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            66665 4678889999999999999999 899999999999988888877666 88999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCcCC
Q 011781          272 FYIFGLLGIAWFSGFKILQEGETSN  296 (477)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~  296 (477)
                      +...+....+.+...++++|.++..
T Consensus       233 l~~~~~pl~~~a~f~~w~~ESpRf~  257 (528)
T KOG0253|consen  233 LFTSSTPLMFAARFLVWVYESPRFY  257 (528)
T ss_pred             HHHHHhHHHHHHHHHhhcccCcchh
Confidence            9998877777788888888877654

>PRK09669 putative symporter YagG; Provisional

Probab=99.82  E-value=7.9e-18  Score=167.07  Aligned_cols=305  Identities=11%  Similarity=0.015  Sum_probs=188.2

Q ss_pred             hhHHHHh-HHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhh----hcChhH-HHHHHHHHHHHHHHHHHhh---
Q 011781          130 KVNLSVA-IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI----FGGRKV-LQTGVLIWSLATALLPLLA---  200 (477)
Q Consensus       130 ~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~g~r~~-~~~~~~~~~~~~~~~~~~~---  200 (477)
                      ......+ ...+.+++|+++.++|.+.++..+...+..|+.|.++||    +||||. ++.+.+..+++..++...+   
T Consensus        25 ~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~  104 (444)
T PRK09669         25 WQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFG  104 (444)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCC
Confidence            3344444 555788899999999999999999999999999999998    677554 5456566666654442221   


Q ss_pred             --chHHHHHHHHHHHHhhccchhhhHHHHhhhhc-CCcchhhHHHHHHhhhhhHHHHHHhhhHHhhc-------ccChhH
Q 011781          201 --GFMPGLVLSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-------NLGWES  270 (477)
Q Consensus       201 --~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~-------~~g~~~  270 (477)
                        .....+++..++.+.+......+..++.+++. ++++|.+..++...+..+|..+++.+...+..       ..+|+.
T Consensus       105 ~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~  184 (444)
T PRK09669        105 ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFY  184 (444)
T ss_pred             cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHH
Confidence              11344555666667777777777888999988 56889999898888888888887765544432       246888


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHH
Q 011781          271 VFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSW  350 (477)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  350 (477)
                      .+.+.+++.++..+..++..+++..++++  ++ .  .                ....++.+++||.++.+++..++...
T Consensus       185 ~~~i~~ii~~v~~~~~~~~~~e~~~~~~~--~~-~--~----------------~~~~~~~~~~n~~~~~l~~~~~~~~~  243 (444)
T PRK09669        185 AMMVMGLLGVVLFFCCFFMTKERYTPEVD--NS-S--S----------------VWKDLKLLLGNSQWRIMFIFNVVLLT  243 (444)
T ss_pred             HHHHHHHHHHHHHHHHhCCeEEecCCCCc--CC-C--C----------------HHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            88887777766554444332221111100  00 0  0                01124678899998888777766655


Q ss_pred             HHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcc
Q 011781          351 GHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSI  430 (477)
Q Consensus       351 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~  430 (477)
                      .........+.|.+..++ +....+.+.....+..+++.++++++.||+|+|        +.............+.+...
T Consensus       244 ~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~--------~~~~~~~~~~~~~~~~~~~~  314 (444)
T PRK09669        244 AVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRV--------RAFKWTIVAFVILSALIFFI  314 (444)
T ss_pred             HHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH--------HHHHHHHHHHHHHHHHHHHh
Confidence            555444444444443333 233444555566677888889999999999876        33332222222222222222


Q ss_pred             cCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccC
Q 011781          431 DLGLPHWEIVGILTAGLALSSFALSGLYCTHQDIS  465 (477)
Q Consensus       431 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  465 (477)
                      ..++.....+..++.|.+.+.. .+..+.+..++.
T Consensus       315 ~~~~~~~~~~~~~i~g~~~~~~-~~~~~am~ad~~  348 (444)
T PRK09669        315 PPSNVWLIFALNILFNFIQNLT-TPLQWSMFSDVV  348 (444)
T ss_pred             CcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhh
Confidence            2223323444445556665544 455666666554

>TIGR00788 fbt folate/biopterin transporter

Probab=99.81  E-value=2.8e-18  Score=170.38  Aligned_cols=347  Identities=12%  Similarity=0.037  Sum_probs=214.6

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhc-----ChhHHHHHHHH
Q 011781          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFG-----GRKVLQTGVLI  188 (477)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g-----~r~~~~~~~~~  188 (477)
                      ..+.++...++..++.........+.+.+++|++.++++...++..+...+-.+ +|+++||++     ||+.++++.++
T Consensus        26 ~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l  104 (468)
T TIGR00788        26 VVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLL  104 (468)
T ss_pred             hHHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHH
Confidence            344455556777777733344445557778999999999999999999988666 999999997     66666766655


Q ss_pred             HH-HHHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHH---HHHhhhhhHHHHHHhhhHHhhc
Q 011781          189 WS-LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVS---FVFGGLSFGSVAGLLLAPPIIE  264 (477)
Q Consensus       189 ~~-~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~---~~~~~~~~g~~ig~~~~~~l~~  264 (477)
                      .+ ++...++...+......+..++.+++.+...++..+++.|..+ +++....+   +......+|.++|+.++|.+.+
T Consensus       105 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~  183 (468)
T TIGR00788       105 GSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLD  183 (468)
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            42 3322222112333344457899999999999999999999998 55544333   3334445899999999999999


Q ss_pred             ccChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcch-h-hhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHH
Q 011781          265 NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSN-Y-INMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMI  342 (477)
Q Consensus       265 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (477)
                      .++|+..|++.+++.++..+...+++|++.....+..++.. . ...........++     ......+.+++|.++...
T Consensus       184 ~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~l~~~~i~~~l  258 (468)
T TIGR00788       184 KTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKV-----QILGLRGAIQLLEIAKPL  258 (468)
T ss_pred             hcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhhhhhhHHHHHHH-----HHHHHHHHHhcHHHHHHH
Confidence            99999999999888877766666666653111111000000 0 0000000000000     001234567888888766


Q ss_pred             HHHHH-hHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhh
Q 011781          343 YAHFC-GSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSP  421 (477)
Q Consensus       343 l~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~  421 (477)
                      +..++ +.........+. .+..+.+|+++...|.+....+++.+++..+.+++.+|++.|        +.+.....+..
T Consensus       259 ~fifl~~~~~~~~~~~~f-~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r--------~~l~~~~~l~~  329 (468)
T TIGR00788       259 IFIFLSYANLPGASGSVF-CATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYR--------LLFGVTTLLYT  329 (468)
T ss_pred             HHHHHHHhhcCCCCceeE-EEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHH--------HHHHHHHHHHH
Confidence            65555 322222221111 122345899999999999999999999999999988888755        44333333332


Q ss_pred             HHHHhhhcc----c----CCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhhc
Q 011781          422 AVCMTLSSI----D----LGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYLE  476 (477)
Q Consensus       422 ~~~~~l~~~----~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl~  476 (477)
                      ...+.....    .    .+...++....++.+.+.+....+....+.+..+++++|+.+|+.
T Consensus       330 ~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~  392 (468)
T TIGR00788       330 LSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALL  392 (468)
T ss_pred             HHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHH
Confidence            222111100    0    011223333445556665666666666666667777799988763

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.81  E-value=2.1e-17  Score=156.46  Aligned_cols=335  Identities=12%  Similarity=0.056  Sum_probs=210.5

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHhhhh-hhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHH--
Q 011781          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSH-RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS--  190 (477)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~--  190 (477)
                      +....+....++.++..+...++.+...+ +.|+|.+++|.+.++..+...+.+++.|.++||+|.||-++....+..  
T Consensus         7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l   86 (412)
T PF01306_consen    7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLL   86 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHH
Confidence            44445556666677778888888887665 589999999999999999999999999999999997776544332221  


Q ss_pred             HHH-HHH---HHhhchH-HHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcc
Q 011781          191 LAT-ALL---PLLAGFM-PGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN  265 (477)
Q Consensus       191 ~~~-~~~---~~~~~~~-~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~  265 (477)
                      .+. ++.   +....+. ...+++.+..|++.....|...+++.+..  ++.+.-.|-..+.+++|.+++..++|.+.+ 
T Consensus        87 ~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~-  163 (412)
T PF01306_consen   87 FGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN-  163 (412)
T ss_dssp             CHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee-
Confidence            111 111   1112222 23334444456666666677777776665  455667888999999999999999999986 


Q ss_pred             cChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHH
Q 011781          266 LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAH  345 (477)
Q Consensus       266 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  345 (477)
                      .+-+..||+..+.+++..++....+.+.+++.+..+......              ++.+.....+++|+|++|.+.+..
T Consensus       164 i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~l~k~~~fw~~~l~v  229 (412)
T PF01306_consen  164 INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKK--------------DKVSLKDVLSLFKMRNFWFFVLFV  229 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS--------------------HHHHHHHTTSHHHHHHHHHH
T ss_pred             eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCC--------------CCCcHHHHHHHhcchhHHHHHHHH
Confidence            456778887766665555544444332222211111110000              000011235889999999998888


Q ss_pred             HHhHHHHHHHhhhhhHHHHHhh---CCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhH
Q 011781          346 FCGSWGHYTCLSWLPTYFSEEL---SLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPA  422 (477)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~  422 (477)
                      ......+..+....+.|....+   +.+....|.+.+...+..++...+.+++.+|+|.|        +.+++.+.+...
T Consensus       230 ~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k--------~~Lllag~i~~i  301 (412)
T PF01306_consen  230 IGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAK--------NLLLLAGVIMAI  301 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChH--------hHHHHHHHHHHH
Confidence            7777777887777888876532   33456688899999999999999999999999987        444444444333


Q ss_pred             HHHhhhcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          423 VCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       423 ~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                       =.....+ .++++++.+.=.+-+.-+..+.....-.+....+++..+++..+
T Consensus       302 -Ri~~~~~-~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v  352 (412)
T PF01306_consen  302 -RIIGSGF-ATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLV  352 (412)
T ss_dssp             -HHHHHHT---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHH
T ss_pred             -HHHHHhh-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHH
Confidence             3333333 22344444555566666666666666666666776666666543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.81  E-value=2.6e-18  Score=169.65  Aligned_cols=302  Identities=17%  Similarity=0.203  Sum_probs=213.1

Q ss_pred             HhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhh----hhcChhHHH-HHHHHHHHHHHHHHHhhc-------h
Q 011781          135 VAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK----IFGGRKVLQ-TGVLIWSLATALLPLLAG-------F  202 (477)
Q Consensus       135 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~-~~~~~~~~~~~~~~~~~~-------~  202 (477)
                      ...+.+.+.+|+++..+|++..+..+..++..|+.|.++|    |+|||+.++ ++....+++..++....+       .
T Consensus        23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~  102 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK  102 (428)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence            3455677888999999999999999999999999999999    789876655 566777776666532212       1


Q ss_pred             HHHHHHHHHHHHhhccchhhhHHHHhhhhcC-CcchhhHHHHHHhhhhhHHHHHHhhhHHhhccc-------ChhHHHHH
Q 011781          203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIP-LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-------GWESVFYI  274 (477)
Q Consensus       203 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~-------g~~~~~~~  274 (477)
                      ...+.+..++..++......+..++..|+.+ +++|.+..+....+..+|..+...+.+.+.+..       +|++..++
T Consensus       103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v  182 (428)
T PF13347_consen  103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV  182 (428)
T ss_pred             HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence            2235667777789999999999999999996 578999999999999998877777777665432       58888888


Q ss_pred             HHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHH
Q 011781          275 FGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYT  354 (477)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  354 (477)
                      .+++.++..++..+..++++++.++.++                   +..-...++.+++||.++.+.+..++.......
T Consensus       183 ~~iv~~v~~~i~~~~~ke~~~~~~~~~~-------------------~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~  243 (428)
T PF13347_consen  183 LAIVGLVFFLITFFFVKERSVEVTEQEK-------------------KISLRDSLRSLFRNRPFRILLLAFFLQWLAFAL  243 (428)
T ss_pred             HHHHHHHHhhhhhheeeecccccccccc-------------------ccccccchhhhcccchHHHHHHHHHHHHhhhhh
Confidence            8888777655555443331111111000                   011123467889999999999999988888888


Q ss_pred             HhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcccCCC
Q 011781          355 CLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGL  434 (477)
Q Consensus       355 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~  434 (477)
                      .....+.|.+..+|.+ ...+.+.....++.+++.+++++++||+|+|        +.......+.....+.+......+
T Consensus       244 ~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~--------~~~~~~~~~~~~~~~~~~~~~~~~  314 (428)
T PF13347_consen  244 MNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKK--------KVYIIGLLLAALGFLLLFFLGPGS  314 (428)
T ss_pred             hhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccce--------eehhhhHHHHHHHHHHHHHHHhhh
Confidence            8888899998887777 5667778888999999999999999999987        333333333333333333332234


Q ss_pred             chHHHHHHHHHHHHhhhhhhhhhhHhhhccC
Q 011781          435 PHWEIVGILTAGLALSSFALSGLYCTHQDIS  465 (477)
Q Consensus       435 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  465 (477)
                      ..+..+...+.|.+.+... ...+.+..++.
T Consensus       315 ~~~~~i~~~l~gi~~~~~~-~~~~a~~ad~i  344 (428)
T PF13347_consen  315 PWLVLILFILAGIGYGAFF-VIPWAMLADVI  344 (428)
T ss_pred             HHHHHHHHHHhHhhhcccc-cccccccccch
Confidence            5555666666677765555 45555555544

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.80  E-value=3.6e-17  Score=163.45  Aligned_cols=264  Identities=12%  Similarity=0.067  Sum_probs=175.4

Q ss_pred             HHHHHHHHhhhhHHHHhHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhh----hhcCh-hHHHHHHHHHHHHH
Q 011781          120 SLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK----IFGGR-KVLQTGVLIWSLAT  193 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r-~~~~~~~~~~~~~~  193 (477)
                      .++.+...+....+..+++. +.+.+|+++..+|.+..+.-+.-++..++.|.++|    |+||| +.++.+....+++.
T Consensus        12 g~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~   91 (473)
T PRK10429         12 GFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVL   91 (473)
T ss_pred             ccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHH
Confidence            34444445555555555444 66778999999999999999999999999999999    56985 55556666666665


Q ss_pred             HHHHHhhc----h--HHHHHHHHHHHHhhccchhhhHHHHhhhhc-CCcchhhHHHHHHhhhhhHHHHHHhhhHHhhc--
Q 011781          194 ALLPLLAG----F--MPGLVLSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE--  264 (477)
Q Consensus       194 ~~~~~~~~----~--~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~--  264 (477)
                      .++ +..+    .  +..+++..++.+++.........++..++. ++++|.+..++...+.++|..+++.+...+.+  
T Consensus        92 ~ll-f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~  170 (473)
T PRK10429         92 FLL-FSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYV  170 (473)
T ss_pred             HHH-HcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            544 3322    1  234555566777888888888999999998 68999999998777778776666655543322  


Q ss_pred             -----ccChhHHHHHHHHHHHHHHHHHHH-hccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHH
Q 011781          265 -----NLGWESVFYIFGLLGIAWFSGFKI-LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAV  338 (477)
Q Consensus       265 -----~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (477)
                           ..+|+....+.+++.++..+..++ .+|+...+..+..++++ ..                .+..++.+++||.+
T Consensus       171 g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-~~----------------~~~~~~~~~~n~~~  233 (473)
T PRK10429        171 GGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGSH-LT----------------LKDIVALIYKNDQL  233 (473)
T ss_pred             CCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccccC-CC----------------HHHHHHHHhcCHHH
Confidence                 124666666666665554444333 33332111100000000 00                01123556789988


Q ss_pred             HHHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhc
Q 011781          339 WAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       339 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~  402 (477)
                      +.+++..++..........+.+.|.+...+ +....+.+.+...++.+++.++++++.||+|+|
T Consensus       234 ~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk  296 (473)
T PRK10429        234 SCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSLSRR  296 (473)
T ss_pred             HHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence            888888877777777766777766654333 555666777777788999999999999999987

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.79  E-value=9.9e-19  Score=162.25  Aligned_cols=354  Identities=18%  Similarity=0.211  Sum_probs=225.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhh-C-------CCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHH
Q 011781          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRF-G-------WNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQ  183 (477)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g-------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~  183 (477)
                      +.+.+.+..++.+....+...++...+.+...+ |       +++...+.+..+..+|.++|++++|++.||+|||+++.
T Consensus        39 ~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG  118 (538)
T KOG0252|consen   39 HFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYG  118 (538)
T ss_pred             HHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhh
Confidence            445566666778888888888888877765543 1       45567788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhc-------hHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHH
Q 011781          184 TGVLIWSLATALLPLLAG-------FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGL  256 (477)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~  256 (477)
                      ..++++.++.++++ ++.       -.+++...|++.|+|.|+-+|...+..+|...++.||...+...+..++|...|.
T Consensus       119 ~~liImIi~t~~~~-~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~  197 (538)
T KOG0252|consen  119 KELIIMIICSALSG-LSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGG  197 (538)
T ss_pred             HHHHHHHHHHHHhc-cCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhcc
Confidence            99999988887554 331       2457889999999999999999999999999999999999998888888888777


Q ss_pred             hhhHHhhcc----c-----------ChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCC-cchhhhhhhh----hhhh
Q 011781          257 LLAPPIIEN----L-----------GWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAP-RSNYINMKKS----LSAS  316 (477)
Q Consensus       257 ~~~~~l~~~----~-----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~  316 (477)
                      +++-.+...    +           =||..+.+..+.+++.+..-+.++|+++...-...+ +....+.++.    ..++
T Consensus       198 ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~  277 (538)
T KOG0252|consen  198 IVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAE  277 (538)
T ss_pred             HHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchh
Confidence            776555421    1           299888888777777777777777776544111100 0000000000    0000


Q ss_pred             HH-hhccCCCCC---CHHHHhhc---HHHHHHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHH--------HHHHH
Q 011781          317 LE-EMGESLKDV---PWKAIFRS---KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAW--------VSILP  381 (477)
Q Consensus       317 ~~-~~~~~~~~~---~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~--------~~~~~  381 (477)
                      .. +...+..+.   .+...+..   +.+...+...|+...+++....+....+.+ .|+.+.....        ...+.
T Consensus       278 ~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~-ig~~~~~~~~~~~~~vA~~~~ii  356 (538)
T KOG0252|consen  278 STAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA-IGVIPSANTYHELFKVAEGNLII  356 (538)
T ss_pred             hccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHh-hccCCCcchHHHHHHHHHHHHHH
Confidence            00 000011111   12233322   455566777888888888888888888864 5665544332        22222


Q ss_pred             HH-HHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcccCCCch--HHHHHHHHHHHHhhhhhh-hhh
Q 011781          382 PL-ASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPH--WEIVGILTAGLALSSFAL-SGL  457 (477)
Q Consensus       382 ~~-~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~g~~~~~~~~-~~~  457 (477)
                      .. +.+.|.++...++|++||+         .+...++.+..+..+.+....+...  .-..++..+..+++.+.+ ...
T Consensus       357 a~~~~vPGyw~tv~~id~iGRk---------~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~tt  427 (538)
T KOG0252|consen  357 AVCSTVPGYWFTVYFIDIIGRK---------YIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATT  427 (538)
T ss_pred             HHHccCCceeEEEEEeehhhhH---------HHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCcee
Confidence            22 2334667778899999976         4455566665555555544333111  111222233333333332 234


Q ss_pred             hHhhhccCccc-hhhhhhhc
Q 011781          458 YCTHQDISPEY-ASILLYLE  476 (477)
Q Consensus       458 ~~~~~~~~p~~-~g~~~gl~  476 (477)
                      ..+..+..|.+ ||+..|++
T Consensus       428 fivpaE~FParvR~t~hGIs  447 (538)
T KOG0252|consen  428 FIVPAEIFPARVRSTCHGIS  447 (538)
T ss_pred             EEeehhhchHHHhhhhhhHH
Confidence            44556666655 99988874

>TIGR01272 gluP glucose/galactose transporter

Probab=99.79  E-value=3.8e-17  Score=153.29  Aligned_cols=246  Identities=12%  Similarity=0.037  Sum_probs=174.0

Q ss_pred             hhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcc-------------
Q 011781          199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-------------  265 (477)
Q Consensus       199 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~-------------  265 (477)
                      ..++++.+++..++.|.|.+...+..+.++++..+++++++.+++.+.++++|.+++|.+++.+...             
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~   85 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN   85 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence            4466788999999999999999999999999999999999999999999999999999999987732             


Q ss_pred             ---cChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHH
Q 011781          266 ---LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMI  342 (477)
Q Consensus       266 ---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (477)
                         ..|+++|++.+++.++..+.+.+.+.++.++++.  ++...              ++   ....++.+++|.++...
T Consensus        86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~--~~~~~--------------~~---~~~~~~~~~~~~~~l~~  146 (310)
T TIGR01272        86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADV--ARVSS--------------GD---TTQKTSAFQFTHLVLGA  146 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccc--ccccc--------------cc---ccchhhHHhhHHHHHHH
Confidence               3699999987777666555555553332211110  00000              00   00113567888999888


Q ss_pred             HHHHHhHHHHHHHhhhhhHHHHHh--hCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhh
Q 011781          343 YAHFCGSWGHYTCLSWLPTYFSEE--LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLS  420 (477)
Q Consensus       343 l~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~  420 (477)
                      +..+++...+.+...|++.|+.+.  +|+++.+++...+.+..+.++|+++.+++.||++++        +.+.... ..
T Consensus       147 ~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~--------~~l~~~~-~l  217 (310)
T TIGR01272       147 LGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQG--------RYLAFNA-FL  217 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH--------HHHHHHH-HH
Confidence            888888889999999999999754  689999999999999999999999999999999876        3333332 22


Q ss_pred             hHHHHhhhcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          421 PAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       421 ~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                      .+++..+.... + ..+....++++|++.+...+.......+.. |++.+++.++
T Consensus       218 ~~~~~~l~~~~-~-~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~-~~~~~~asai  269 (310)
T TIGR01272       218 AVLLSIGAALT-H-GYVAMWFVLALGLFNSIMFPTIFSLALNAL-GRHTSQGSGI  269 (310)
T ss_pred             HHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhhhHHH
Confidence            22222222222 1 233344555677776666654444444444 4555555543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK09848 glucuronide transporter; Provisional

Probab=99.78  E-value=9.3e-17  Score=159.68  Aligned_cols=259  Identities=10%  Similarity=0.027  Sum_probs=159.3

Q ss_pred             HHHHHHHhhhhHHHHh-HHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhh----cChhHH-HHHHHHHHHHHH
Q 011781          121 LAFVICNMDKVNLSVA-IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF----GGRKVL-QTGVLIWSLATA  194 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~----g~r~~~-~~~~~~~~~~~~  194 (477)
                      ++.+..........++ .+++.+.+|+++.++|.+.++..+..++..+++|+++||.    |||+.+ ..+.+...+...
T Consensus        15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~   94 (448)
T PRK09848         15 LGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSV   94 (448)
T ss_pred             cchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHH
Confidence            3444444444444444 4457777899999999999999999999999999999996    666654 445444443333


Q ss_pred             HHHHhh----c--hHHHHHHHHHHHHhhccchhhhHHHHhhhhc-CCcchhhHHHHHHhhhh-----hHHHHHHhhhHHh
Q 011781          195 LLPLLA----G--FMPGLVLSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLS-----FGSVAGLLLAPPI  262 (477)
Q Consensus       195 ~~~~~~----~--~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~-----~g~~ig~~~~~~l  262 (477)
                      ++....    .  .....++..++.+++.+...++..++..+.. ++++|.+..+....+.+     ++..++|.+++..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~  174 (448)
T PRK09848         95 LVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSS  174 (448)
T ss_pred             HHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            321111    1  1222344556778888888877777777666 44678887776654333     4555566665543


Q ss_pred             hccc--ChhHHHHHHHHHHHHHHHHHH-HhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHH
Q 011781          263 IENL--GWESVFYIFGLLGIAWFSGFK-ILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVW  339 (477)
Q Consensus       263 ~~~~--g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (477)
                      ....  +|.....+.+++.++..++.. ..+|+.+++.    ++.                   .....++.+++||.++
T Consensus       175 g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~----~~~-------------------~~~~~~~~l~~n~~f~  231 (448)
T PRK09848        175 PEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIV----AQP-------------------SLKISLQTLKRNRPLF  231 (448)
T ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCc----cCC-------------------CHHHHHHHHhCCchHH
Confidence            2111  121111222222222222221 1222211100    000                   0011256789999999


Q ss_pred             HHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhc
Q 011781          340 AMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       340 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~  402 (477)
                      ...+..++............|.|+++.+|.+....++......++.+++.++.+++.||+|+|
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~  294 (448)
T PRK09848        232 MLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK  294 (448)
T ss_pred             HHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence            988888888888888888888888888887776665555555677888899999999999876

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.77  E-value=1.4e-15  Score=149.63  Aligned_cols=308  Identities=16%  Similarity=0.089  Sum_probs=216.6

Q ss_pred             hhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHH-HHHHHHHh-hchHHHHHHHHHHHHhhccchhhhHHHH
Q 011781          150 VAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL-ATALLPLL-AGFMPGLVLSRVLVGIGEGVSPSAATDL  227 (477)
Q Consensus       150 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~  227 (477)
                      ..++..++..+...+..++.|.++|+-++||.++....+.++ +...+.+. .++++...++.++.-++.+......+++
T Consensus        71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~  150 (477)
T PF11700_consen   71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY  150 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346778888889999999999999999988877665554443 33444333 3444555556666667888888999999


Q ss_pred             hhhhcCCcch--------------------------hhHHHHHHhhhhhHHHHHHhhhHHhhcc--------cChhHHHH
Q 011781          228 IARSIPLEER--------------------------SRAVSFVFGGLSFGSVAGLLLAPPIIEN--------LGWESVFY  273 (477)
Q Consensus       228 i~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~ig~~~~~~l~~~--------~g~~~~~~  273 (477)
                      +.++.+++++                          ++..+.-....++|+++.-.+.-.+...        .+.|..+.
T Consensus       151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~  230 (477)
T PF11700_consen  151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFL  230 (477)
T ss_pred             hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHH
Confidence            9999998888                          8999999999999988877765554322        23588888


Q ss_pred             HHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHH
Q 011781          274 IFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHY  353 (477)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  353 (477)
                      +.++..++..+..++..++++.++..+... +.  .....++-         ...++++.|.|.+..+++..+++.-+..
T Consensus       231 ~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~-~~--~~~g~~~l---------~~t~k~~~~~~~~~~fLia~~l~~dg~~  298 (477)
T PF11700_consen  231 IVALWWLVFSIPLFLWLPDRPGPRPLPSGS-SY--LRFGFKRL---------WRTFKEIRKLRQLFLFLIAYFLYSDGVN  298 (477)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCCCcch-hH--HHHHHHHH---------HHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            888887776665555444333211111111 00  01111111         1124677788999999999999999999


Q ss_pred             HHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhc----
Q 011781          354 TCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSS----  429 (477)
Q Consensus       354 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~----  429 (477)
                      ++......|..+.+|++..+...+.....+.+++|.+++|++.||+|.|      .++.+.........+++....    
T Consensus       299 ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k------~~~~l~~~l~~~~~i~~~g~~G~~~  372 (477)
T PF11700_consen  299 TIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPK------TKRTLLISLILWIIIPLYGLFGFWP  372 (477)
T ss_pred             HHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc------hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999999999999986      112332222222222222211    


Q ss_pred             --ccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          430 --IDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       430 --~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                        ....+.....+..+++|.+.++........+.+.+||++.+..+|+
T Consensus       373 ~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgl  420 (477)
T PF11700_consen  373 SFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGL  420 (477)
T ss_pred             cccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHH
Confidence              1133444455666778888888888888888888899889988886

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.77  E-value=3.7e-22  Score=198.91  Aligned_cols=278  Identities=19%  Similarity=0.241  Sum_probs=186.2

Q ss_pred             HHHHHHHhhhhHHHHhHHhhh--hhhCCCc---------chhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHH
Q 011781          121 LAFVICNMDKVNLSVAIIPMS--HRFGWNS---------SVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIW  189 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~--~~~g~s~---------~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  189 (477)
                      ++.+..+++...++...+...  ..++.+.         .+.++..+...++..+|++++|.++||+|||+.+.++.++.
T Consensus         7 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~   86 (451)
T PF00083_consen    7 LGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLM   86 (451)
T ss_pred             HHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccccc
Confidence            344566666666655554433  2222222         34688999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhc---hHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhccc
Q 011781          190 SLATALLPLLAG---FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL  266 (477)
Q Consensus       190 ~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~  266 (477)
                      .++.++.. +++   +++.+.++|++.|++.|...+....++.|..|+++|++..++.+....+|..++..++..+....
T Consensus        87 ~i~~~~~~-~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~  165 (451)
T PF00083_consen   87 IIGSILIA-FAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS  165 (451)
T ss_pred             cccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            89888875 566   78999999999999999999999999999999999999999999999999999888876554433


Q ss_pred             ---ChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcch--hhhhhh---hhhhhHHh----hccC-CCCCCHHHHh
Q 011781          267 ---GWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSN--YINMKK---SLSASLEE----MGES-LKDVPWKAIF  333 (477)
Q Consensus       267 ---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~----~~~~-~~~~~~~~~~  333 (477)
                         +||+.+++.++..++..+...++||.++.-..+.+.++.  ..+..+   ..+++.++    .++. ..+..+++++
T Consensus       166 ~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  245 (451)
T PF00083_consen  166 DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLF  245 (451)
T ss_pred             ccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccccccceeeeecc
Confidence               499999999888887777778888876543322211111  111100   00011111    1111 0113355666


Q ss_pred             hcHH----HHHHHHHHHHh-HHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhc
Q 011781          334 RSKA----VWAMIYAHFCG-SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       334 ~~~~----~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~  402 (477)
                      +++.    +...+...++. ..+......+.+.+++ ..+.+..  -.......+...++.++..++.||+|||
T Consensus       246 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr  316 (451)
T PF00083_consen  246 RNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFE-NAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRR  316 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccc-ccccccc--cccccccccccccccccccccccccccc
Confidence            6643    22222222222 2222344455555554 4566665  2233445566677777788999999987

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.77  E-value=2.5e-16  Score=146.60  Aligned_cols=345  Identities=13%  Similarity=0.101  Sum_probs=233.9

Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHH
Q 011781          105 PWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQT  184 (477)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~  184 (477)
                      ..|..++||.+++.+.+..+.+.+.+..+++...+....+| +...+-|...+|.+.++...+++-|+.||+|-|..+.+
T Consensus        36 ~~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~ll  114 (480)
T KOG2563|consen   36 GHRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLL  114 (480)
T ss_pred             ccccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHH
Confidence            44566677777777777777777778778887777777788 77888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh-----chHH--HHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHh
Q 011781          185 GVLIWSLATALLPLLA-----GFMP--GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLL  257 (477)
Q Consensus       185 ~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~  257 (477)
                      +..+.+++..+-...+     +.++  ....+..+.+.+..........+..-|+++++|..+..+-.++..+|.++|.+
T Consensus       115 gt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l  194 (480)
T KOG2563|consen  115 GTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL  194 (480)
T ss_pred             HHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh
Confidence            9999999887654322     2334  56677788888777776666677888999999999999999999999999999


Q ss_pred             hhHHhhccc------ChhH--HHHHHHHHHHHHHHHHHHhccC-CcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCC
Q 011781          258 LAPPIIENL------GWES--VFYIFGLLGIAWFSGFKILQEG-ETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVP  328 (477)
Q Consensus       258 ~~~~l~~~~------g~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (477)
                      +...+..+-      .|..  .|+..++++.+.++...+...+ ++.+.........                +..-..+
T Consensus       195 lppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~----------------~~~f~~s  258 (480)
T KOG2563|consen  195 LPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ----------------DASFPKS  258 (480)
T ss_pred             ccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh----------------cCcHHHH
Confidence            888887543      3543  2443444443333333333222 2222111111100                0001223


Q ss_pred             HHHHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccce
Q 011781          329 WKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTM  408 (477)
Q Consensus       329 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~  408 (477)
                      .++.++|+.+..+.+...+....+++..+.+..-+.. -|++...+|.+.....+++++++.+.|.+.||..+-      
T Consensus       259 i~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~-sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~f------  331 (480)
T KOG2563|consen  259 IKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCP-SGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKF------  331 (480)
T ss_pred             HHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhcccc-ccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhH------
Confidence            5788999999888887777776767666666645543 577778899999999999999999999999998654      


Q ss_pred             ehhhhhHHhhhhhHHH-H--hhhcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          409 VRKICQTIAFLSPAVC-M--TLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       409 ~r~~~~~~~~~~~~~~-~--~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                       ++...+.... ..+. +  ..........+++.....++|.+..+..+...-.-.+...|..-|+-.|+
T Consensus       332 -k~~~~v~~~~-~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGl  399 (480)
T KOG2563|consen  332 -KLTTLVLYLF-ALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGL  399 (480)
T ss_pred             -HHHHHHHHHH-HHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCccccee
Confidence             2333332222 2222 2  22222233444555666677777666655444444444556555554443

>PRK11462 putative transporter; Provisional

Probab=99.75  E-value=2e-15  Score=149.91  Aligned_cols=257  Identities=12%  Similarity=0.039  Sum_probs=171.7

Q ss_pred             HHHHHHHhhhhHHHHh-HHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhh----hcChhHHH-HHHHHHHHHHH
Q 011781          121 LAFVICNMDKVNLSVA-IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI----FGGRKVLQ-TGVLIWSLATA  194 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~g~r~~~~-~~~~~~~~~~~  194 (477)
                      ++.+.........+.+ ...+.+.+|+++..+|.+..+.-+.-++..|+.|.++||    +||||.++ ++....+++..
T Consensus        16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~   95 (460)
T PRK11462         16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV   95 (460)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence            3333344444445544 444778899999999999999999999999999999996    68876554 55566666665


Q ss_pred             HHHHhhch------HHHHHHHHHHHHhhccchhhhHHHHhhhhcC-CcchhhHHHHHHhhhhhHHHHHHhhhHHhhccc-
Q 011781          195 LLPLLAGF------MPGLVLSRVLVGIGEGVSPSAATDLIARSIP-LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-  266 (477)
Q Consensus       195 ~~~~~~~~------~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~-  266 (477)
                      ++ +..+.      ...+.+..++..++.........++.+++.+ +++|.+..++...+..+|..+++.+...+.+.. 
T Consensus        96 ll-f~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g  174 (460)
T PRK11462         96 LA-YSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIG  174 (460)
T ss_pred             HH-HhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            54 33321      2345556667788888888888899999885 789999999999999999888877766554432 


Q ss_pred             ------ChhHHHHHHHHHHHHHHHHHHHh-ccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHH
Q 011781          267 ------GWESVFYIFGLLGIAWFSGFKIL-QEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVW  339 (477)
Q Consensus       267 ------g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (477)
                            +|+....+.+++.++..++.+.. +|+.+. ++   ++..   .                +..++.+++||.++
T Consensus       175 ~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~-~~---~~~~---~----------------~~~l~~~~~Nk~~~  231 (460)
T PRK11462        175 GDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEA-PP---TTTS---M----------------REDLRDIWQNDQWR  231 (460)
T ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCC-Cc---cCCC---H----------------HHHHHHHhCChHHH
Confidence                  57776667666665554444332 222111 10   0000   0                01245778888887


Q ss_pred             HHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhc
Q 011781          340 AMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       340 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~  402 (477)
                      .+....++..............|.+..+|. ....+.+.....++.+++.++++++.||+++|
T Consensus       232 ~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk  293 (460)
T PRK11462        232 IVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKV  293 (460)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence            776665555555444444444444443443 33445567777888899999999999999876

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.74  E-value=4e-15  Score=138.50  Aligned_cols=311  Identities=19%  Similarity=0.175  Sum_probs=215.0

Q ss_pred             hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhc-----ChhHHHH-HHHHHHHHHHHHHH----hhc--------
Q 011781          140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFG-----GRKVLQT-GVLIWSLATALLPL----LAG--------  201 (477)
Q Consensus       140 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g-----~r~~~~~-~~~~~~~~~~~~~~----~~~--------  201 (477)
                      +..|++++....+.+.++..+.. ...+.+|..+|+.+     ||..++. +.++.+.+..+.+.    ...        
T Consensus         6 MIvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~   84 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP   84 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence            56789999999999999888776 46899999999998     7776655 44444443333221    122        


Q ss_pred             hHH---HHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHH---H
Q 011781          202 FMP---GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYI---F  275 (477)
Q Consensus       202 ~~~---~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~---~  275 (477)
                      .+.   ...+...+.|+|.+....+..+++.|..|+++|+++.++...+.-+|.+++..+.|.+.+.++..-..-+   .
T Consensus        85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~  164 (403)
T PF03209_consen   85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGV  164 (403)
T ss_pred             cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHH
Confidence            211   2445667889999999999999999999999999999999999999999999999999988764333333   2


Q ss_pred             HHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHH
Q 011781          276 GLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC  355 (477)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  355 (477)
                      +++.++..++..+-.|++..+.....++++. .                ....+++++.+|....+++..++...+++.-
T Consensus       165 a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~~-~----------------f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~Q  227 (403)
T PF03209_consen  165 ALIALLLNLIALWGQEPRRSRRAAAAERPRP-P----------------FREAWRQVWASPQARRFFVFLFLGTLAFFMQ  227 (403)
T ss_pred             HHHHHHHHHHHHHhcccCCcccccCCCCCCc-c----------------HHHHHHHHHhCCChhHHHHHHHHHHHHHHhh
Confidence            2233333333333333333222211111110 0                0123567778888888888888888888888


Q ss_pred             hhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhH-HHhcCcccceehhhhhHHhhhhhHHHHhhhcccCCC
Q 011781          356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADN-LIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGL  434 (477)
Q Consensus       356 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~  434 (477)
                      ...+-+|--+.+|++..+...+.+..+.+.+++....|++..| .+++       |.....+.....+..+++..-...+
T Consensus       228 D~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~-------~~a~~G~~~~~~~f~lii~a~~~~~  300 (403)
T PF03209_consen  228 DVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKK-------RTAALGCLLGALAFALIILAGPLGS  300 (403)
T ss_pred             HHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch-------HHHHHHHHHHHHHHHHHHHHHhccc
Confidence            8899999999999999999999999999999999999987664 3322       2222222222222222222222344


Q ss_pred             chHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          435 PHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       435 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                      ...+....+++|++.+.+.............+++.|..+|.
T Consensus       301 ~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~  341 (403)
T PF03209_consen  301 PWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGA  341 (403)
T ss_pred             chHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHH
Confidence            55667788899999888887777777777888889988874

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.73  E-value=5.4e-15  Score=140.24  Aligned_cols=362  Identities=15%  Similarity=0.195  Sum_probs=218.9

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHh-HHhhhhhhC----CCcchhhHHHHHHHHHHHHhhhhhhhhhhhh-cChhHHHHHHH
Q 011781          114 KLIGTTSLAFVICNMDKVNLSVA-IIPMSHRFG----WNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-GGRKVLQTGVL  187 (477)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g----~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~  187 (477)
                      +-+..++..-+-.-++.+..... .-++..+++    ++.+++.-+.+.|....-+..+++|+++||+ |+|+.+..+.+
T Consensus        21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGai  100 (498)
T COG3104          21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAI  100 (498)
T ss_pred             chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            33444444544444444333332 333444555    9999998888888888888999999999995 99999999999


Q ss_pred             HHHHHHHHHHHhh-chHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcc--hhhHHHHHHhhhhhHHHHHHhhhHHhhc
Q 011781          188 IWSLATALLPLLA-GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEE--RSRAVSFVFGGLSFGSVAGLLLAPPIIE  264 (477)
Q Consensus       188 ~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~ig~~~~~~l~~  264 (477)
                      ++.++.++++..+ .....+++..++.++|.|..-+...+++.|.+|+++  |...++++.++.++|+.++|++.+++.+
T Consensus       101 l~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~  180 (498)
T COG3104         101 LMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAI  180 (498)
T ss_pred             HHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHH
Confidence            9999999886432 345788999999999999999999999999997543  7788999999999999999999999999


Q ss_pred             ccChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcc----hhh-hhh-------hh---hhhhHHhh---------
Q 011781          265 NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRS----NYI-NMK-------KS---LSASLEEM---------  320 (477)
Q Consensus       265 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~-------~~---~~~~~~~~---------  320 (477)
                      .+||...|.+.++-..+.++.+...++.-.......+...    ... ...       ..   .....+..         
T Consensus       181 ~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i  260 (498)
T COG3104         181 NYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISI  260 (498)
T ss_pred             hhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988888777776666543222111111000    000 000       00   00000000         


Q ss_pred             -------ccCCCCCC-HHHHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHhhCCc----hhhhHHHHHHHHHHHHHH
Q 011781          321 -------GESLKDVP-WKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLN----LTEAAWVSILPPLASVLV  388 (477)
Q Consensus       321 -------~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~g~~~~~~~~~~~~~  388 (477)
                             .+.....+ ..+--|-.....+++...++...+....+.+..|..+..+.+    ....++..+...+.-++.
T Consensus       261 ~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~  340 (498)
T COG3104         261 LIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILF  340 (498)
T ss_pred             HHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHH
Confidence                   00000000 001001111222333333444444444555555654432222    123457778888888888


Q ss_pred             HHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhc---c---cC-CCchHHHHHHHHHHHHhhhhhhhhhhHhh
Q 011781          389 TSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSS---I---DL-GLPHWEIVGILTAGLALSSFALSGLYCTH  461 (477)
Q Consensus       389 ~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~---~---~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  461 (477)
                      .++..++-.|.++++.......|..+...+.....+++...   .   .. .+..|.+...++..++--...+.......
T Consensus       341 ~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t  420 (498)
T COG3104         341 SPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVT  420 (498)
T ss_pred             HHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            88888888887777654444455444333333333322222   1   11 22344455555555554444444444444


Q ss_pred             hccCccchhhhhhh
Q 011781          462 QDISPEYASILLYL  475 (477)
Q Consensus       462 ~~~~p~~~g~~~gl  475 (477)
                      ...|+.-.+.++|+
T Consensus       421 ~laP~~~~s~~ma~  434 (498)
T COG3104         421 KLAPPALKSFIMAM  434 (498)
T ss_pred             HhChHHHHHHHHHH
Confidence            44455447777764

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.73  E-value=1e-16  Score=159.57  Aligned_cols=289  Identities=16%  Similarity=0.187  Sum_probs=225.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHH
Q 011781          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (477)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (477)
                      +.++.++.+..+...+....+...+..+.+.++++..+.|++.+.+-++..+...+..++.-|..|-+++-++.++++++
T Consensus        96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lg  175 (735)
T KOG3626|consen   96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLG  175 (735)
T ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHH
Confidence            34566667777777777777888899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhc----------------------------------------------------hHHHHHHHHHHHHhhccch
Q 011781          193 TALLPLLAG----------------------------------------------------FMPGLVLSRVLVGIGEGVS  220 (477)
Q Consensus       193 ~~~~~~~~~----------------------------------------------------~~~~~~~~~~l~g~~~~~~  220 (477)
                      .++.. +++                                                    .+..++++.++.|+|....
T Consensus       176 sll~a-lPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi  254 (735)
T KOG3626|consen  176 SLLFA-LPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI  254 (735)
T ss_pred             HHHHh-ChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence            88874 220                                                    0124677889999999999


Q ss_pred             hhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhccc------------------C-hhHHHHHHHHHHHH
Q 011781          221 PSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL------------------G-WESVFYIFGLLGIA  281 (477)
Q Consensus       221 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~------------------g-~~~~~~~~~~~~~~  281 (477)
                      ++...+++-|...+++-+..+|+..+...+|.++|-++++++...+                  | |...|++.+.+.++
T Consensus       255 ~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~  334 (735)
T KOG3626|consen  255 FTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLF  334 (735)
T ss_pred             ccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999886421                  1 67788888888888


Q ss_pred             HHHHHHHhccCCcCCCCCCCCcchhhhhhhhh-hhhHHhhccCCC--CCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhhh
Q 011781          282 WFSGFKILQEGETSNGATLAPRSNYINMKKSL-SASLEEMGESLK--DVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSW  358 (477)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  358 (477)
                      ..+.++++|+..++..++...++......+.. ........++.+  ....+++++||.+....+...+....+.++.+|
T Consensus       335 ~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tF  414 (735)
T KOG3626|consen  335 SAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITF  414 (735)
T ss_pred             HHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHh
Confidence            88888888877665443211111100000000 000000000000  123578899999999999999999999999999


Q ss_pred             hhHHHHHhhCCchhhhHHHHHHHHHH-HHHHHHhhhhchhHHHhc
Q 011781          359 LPTYFSEELSLNLTEAAWVSILPPLA-SVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       359 ~~~~~~~~~g~~~~~~g~~~~~~~~~-~~~~~~~~g~l~dr~g~~  402 (477)
                      +|.|++.++|.+...+..+.+..++. ..+|.+++|++.+|+.-+
T Consensus       415 lPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~  459 (735)
T KOG3626|consen  415 LPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLS  459 (735)
T ss_pred             hHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeeccc
Confidence            99999999999999999988776665 566778899999998443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.70  E-value=1.1e-14  Score=139.35  Aligned_cols=319  Identities=14%  Similarity=0.106  Sum_probs=222.9

Q ss_pred             HHHHHHHHHHhhhhHHHHhHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhh----hcChhH-HHHHHHHHHH
Q 011781          118 TTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI----FGGRKV-LQTGVLIWSL  191 (477)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~g~r~~-~~~~~~~~~~  191 (477)
                      .....-+...........++.. +.+.+|+++..+|.++.+.-+--++.-|+.|.++||    +||+|. ++.+.+-.++
T Consensus        16 ~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i   95 (467)
T COG2211          16 GYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAI   95 (467)
T ss_pred             hhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHH
Confidence            3344444554555555555554 778899999999999999999999999999999996    676655 4455566666


Q ss_pred             HHHHHHHhhc------hHHHHHHHHHHHHhhccchhhhHHHHhhhhc-CCcchhhHHHHHHhhhhhHHHHHHhhhHHhhc
Q 011781          192 ATALLPLLAG------FMPGLVLSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE  264 (477)
Q Consensus       192 ~~~~~~~~~~------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~  264 (477)
                      .+.++ +.++      .....++...+.+++......+..++.+++. +++||.+..+....+..+|..+...+.+.+..
T Consensus        96 ~~~l~-F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~  174 (467)
T COG2211          96 VAVLL-FITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVK  174 (467)
T ss_pred             HHHHH-HcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66555 3444      2345677788899999999999999999988 56899999999999999997777666655553


Q ss_pred             -------ccChhHHHHHHHHHHHHHHHHHHHh-ccCCcCCCCCCC-CcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhc
Q 011781          265 -------NLGWESVFYIFGLLGIAWFSGFKIL-QEGETSNGATLA-PRSNYINMKKSLSASLEEMGESLKDVPWKAIFRS  335 (477)
Q Consensus       265 -------~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (477)
                             ..||+....+.+++.++..+.+++- +|+..+....+. .+.+                   .+..+..+++|
T Consensus       175 ~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~-------------------~~~~~~~~~~N  235 (467)
T COG2211         175 LFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLK-------------------LKDSFLLIFKN  235 (467)
T ss_pred             HhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCccccccc-------------------HHHHHHHHHcc
Confidence                   3478888888888777766555544 343332221111 0000                   01123467899


Q ss_pred             HHHHHHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhH
Q 011781          336 KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQT  415 (477)
Q Consensus       336 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~  415 (477)
                      |.+...++..++...+.....+....|.+..+|.+.............+.+++.+++.++.+|+|+|        +....
T Consensus       236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk--------~~~~~  307 (467)
T COG2211         236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKK--------KLFLI  307 (467)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH--------HHHHH
Confidence            9999998888888888888888888888888888888888888888888888899999999999987        44444


Q ss_pred             HhhhhhHHHHhhhcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccC
Q 011781          416 IAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDIS  465 (477)
Q Consensus       416 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  465 (477)
                      ...+.....+.+.... .+..++++...++.....+...+..+++..+..
T Consensus       308 ~~~~~~i~~~~~~f~~-~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~v  356 (467)
T COG2211         308 GLLLLAVGYLLLYFTP-AGSVVLIVVALIIAGVGTGIANPLPWAMVADTV  356 (467)
T ss_pred             HHHHHHHHHHHHHhhc-CcchHHHHHHHHHHHHHhhccccccHHHhcchh
Confidence            4333333333333333 444555555545555556666677888777765

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.68  E-value=3.5e-18  Score=170.35  Aligned_cols=286  Identities=16%  Similarity=0.228  Sum_probs=3.0

Q ss_pred             HHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHH
Q 011781          116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATAL  195 (477)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  195 (477)
                      +..+++..+.+......+...++.+.++|+++.++.|++.+.+-++..+..++..++.+|..|-+++-.+.++++++.++
T Consensus         5 l~~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l   84 (539)
T PF03137_consen    5 LVFLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLL   84 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHH
Confidence            34455555566666677777788999999999999999999999999999999999999988888888999999988877


Q ss_pred             HHHhhc--------------------------------------------------hHHHHHHHHHHHHhhccchhhhHH
Q 011781          196 LPLLAG--------------------------------------------------FMPGLVLSRVLVGIGEGVSPSAAT  225 (477)
Q Consensus       196 ~~~~~~--------------------------------------------------~~~~~~~~~~l~g~~~~~~~~~~~  225 (477)
                      ++ +++                                                  .+..++++.++.|+|....++...
T Consensus        85 ~~-lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~  163 (539)
T PF03137_consen   85 FA-LPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGI  163 (539)
T ss_dssp             --------------------------------------------------------------------SSS---------
T ss_pred             Hh-ccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcccee
Confidence            63 211                                                  023477889999999999999999


Q ss_pred             HHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhccc---------------------C-hhHHHHHHHHHHHHHH
Q 011781          226 DLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL---------------------G-WESVFYIFGLLGIAWF  283 (477)
Q Consensus       226 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~---------------------g-~~~~~~~~~~~~~~~~  283 (477)
                      +++-|..++++-+.++|+..+...+|.++|-++++.+...+                     | |-..|++.+++.++..
T Consensus       164 tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~a  243 (539)
T PF03137_consen  164 TYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSA  243 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999876421                     2 6667777888888888


Q ss_pred             HHHHHhccCCcCCCCCCCCcch-hhhhhhhhhhhHHhh------cc--CCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHH
Q 011781          284 SGFKILQEGETSNGATLAPRSN-YINMKKSLSASLEEM------GE--SLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYT  354 (477)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  354 (477)
                      +..+.+|+.-+...+....++. ..+.++...+..++.      .+  +.-....+++++||.+....+..........+
T Consensus       244 ipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G  323 (539)
T PF03137_consen  244 IPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSG  323 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence            8888887765554211111100 000000000000000      01  11124467889999999999999999999999


Q ss_pred             HhhhhhHHHHHhhCCchhhhHHHHHHHHH-HHHHHHHhhhhchhHHHhc
Q 011781          355 CLSWLPTYFSEELSLNLTEAAWVSILPPL-ASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       355 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g~~  402 (477)
                      +.+++|.|++.+++.++..++++.+...+ ++++|.+++|++.+|+.-+
T Consensus       324 ~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~  372 (539)
T PF03137_consen  324 FATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLS  372 (539)
T ss_dssp             -------------------------------------------------
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCc
Confidence            99999999999999999999988877666 5778889999999998654

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.68  E-value=1.5e-14  Score=134.18  Aligned_cols=304  Identities=15%  Similarity=0.068  Sum_probs=222.3

Q ss_pred             cchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHH-HHHHhhc--hHHHHHHHHHHHHhhccchhhhH
Q 011781          148 SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA-LLPLLAG--FMPGLVLSRVLVGIGEGVSPSAA  224 (477)
Q Consensus       148 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~  224 (477)
                      .+..|...++..+...+..++.|.++|+.|+||.........++... ++.+.++  +++..++...+..++........
T Consensus        57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy  136 (438)
T COG2270          57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY  136 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence            34568888899999999999999999999988877665555554443 3333344  45566777788889989999999


Q ss_pred             HHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhh--HHhh----------------cccChhHHHHHHHHHHHHHHHHH
Q 011781          225 TDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA--PPII----------------ENLGWESVFYIFGLLGIAWFSGF  286 (477)
Q Consensus       225 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~--~~l~----------------~~~g~~~~~~~~~~~~~~~~~~~  286 (477)
                      .+++.+..++++-++..++-.....+|+.+.-++.  +.+.                +...-|.++.+.++..++..+..
T Consensus       137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm  216 (438)
T COG2270         137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPM  216 (438)
T ss_pred             hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHH
Confidence            99999999999989988888777777777654442  1111                22346788888888877776666


Q ss_pred             HHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHh
Q 011781          287 KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEE  366 (477)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  366 (477)
                      +...++.++.. .  ...+  ...+..++-         ..+++++.+++.+..+.++.+++.-+..+...+-..|....
T Consensus       217 ~~~v~~~~~~~-~--~~~~--~l~~g~k~L---------~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~  282 (438)
T COG2270         217 ILNVHDAEKIS-S--PPPT--ALRNGFKEL---------KSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAAD  282 (438)
T ss_pred             Hhccccccccc-c--cchH--HHHHHHHHH---------HHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            65544443221 0  0000  001111111         11356778888899999999999999999999999999988


Q ss_pred             hCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcccCCCchHHHHHHHHHH
Q 011781          367 LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAG  446 (477)
Q Consensus       367 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g  446 (477)
                      +|++..+..++.....+.+++|++++|++.||+|.|        +.+....++....++......  ...-..+..+++|
T Consensus       283 ~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k--------~vl~~~lvi~~~~~~~~~~~~--~~~~f~i~gll~g  352 (438)
T COG2270         283 LGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSK--------PVLMIGLVILSIAALYLIFLE--GELDFWILGLLVG  352 (438)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc--------eeehHHHHHHHHHHHHHHHcc--ccHHHHHHHHHHH
Confidence            999999999999999999999999999999999887        444444444445555444443  2344455567888


Q ss_pred             HHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          447 LALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                      ...++........+.+.+||++.|+.+|+
T Consensus       353 ~s~G~~qA~SRSy~~~lvp~~k~~~fFgl  381 (438)
T COG2270         353 TSLGGAQASSRSYLARLVPKGKEGRFFGL  381 (438)
T ss_pred             HhcchHHHHHHHHHHHhCCCccccceeeh
Confidence            89899998899999999999999998886

>TIGR00889 2A0110 nucleoside transporter

Probab=99.63  E-value=6.4e-15  Score=144.67  Aligned_cols=159  Identities=19%  Similarity=0.254  Sum_probs=128.6

Q ss_pred             HHHHhHHhhhhhhCCCc--------chhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhc--
Q 011781          132 NLSVAIIPMSHRFGWNS--------SVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG--  201 (477)
Q Consensus       132 ~~~~~~~~~~~~~g~s~--------~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--  201 (477)
                      ....+.+.+.++.|.++        ...+...++..++.+++.++.|+++||+|+|+++.++.++.+++..++.....  
T Consensus       226 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~  305 (418)
T TIGR00889       226 ITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEY  305 (418)
T ss_pred             HHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcch
Confidence            34455566666666553        56799999999999999999999999999999999998888777655543222  


Q ss_pred             -hHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHH-hhhhhHHHHHHhhhHHhhcc------cChhHHHH
Q 011781          202 -FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVF-GGLSFGSVAGLLLAPPIIEN------LGWESVFY  273 (477)
Q Consensus       202 -~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~ig~~~~~~l~~~------~g~~~~~~  273 (477)
                       +++.+++.+++.|++.+...+....++.+.+|+++|++++|+.+ ....+|.++||.++|.+.++      +||+..|.
T Consensus       306 ~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~  385 (418)
T TIGR00889       306 FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWL  385 (418)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHH
Confidence             23456778999999998888999999999999999999999997 67889999999999999987      46999999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 011781          274 IFGLLGIAWFSGFKILQ  290 (477)
Q Consensus       274 ~~~~~~~~~~~~~~~~~  290 (477)
                      +.+++.++..++..++.
T Consensus       386 ~~~~~~~i~~~l~~~~~  402 (418)
T TIGR00889       386 FFAGYIAILAVLFMIFF  402 (418)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            88888777655554443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.63  E-value=2.6e-13  Score=124.49  Aligned_cols=253  Identities=15%  Similarity=0.108  Sum_probs=178.5

Q ss_pred             HHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhch
Q 011781          123 FVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF  202 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~  202 (477)
                      +.+.......-+++.-.+.+++|++..+++.+.........+...+.|.++||+|||+.-++..++++++++.-  ..++
T Consensus        43 Y~La~~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k--~~~~  120 (354)
T PF05631_consen   43 YLLAMAADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK--HSSN  120 (354)
T ss_pred             HHHHHHHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH--hccc
Confidence            33444556666676666667899999999999999999999999999999999999999998888888887654  4577


Q ss_pred             HHHHHHHHHHHHhhccchhhhHHHHhhhhc-----CCcchhhHHHHHH-hhhhhHHHHHHhhhHHhhcccCh--hHHHHH
Q 011781          203 MPGLVLSRVLVGIGEGVSPSAATDLIARSI-----PLEERSRAVSFVF-GGLSFGSVAGLLLAPPIIENLGW--ESVFYI  274 (477)
Q Consensus       203 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~-----~~~~r~~~~~~~~-~~~~~g~~ig~~~~~~l~~~~g~--~~~~~~  274 (477)
                      ++.+++.|++.|++.+..+.+..++...-.     |++..+.-++... ..+++-.+++.+++.++.+..+.  ..+|..
T Consensus       121 ~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~  200 (354)
T PF05631_consen  121 YPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDA  200 (354)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHH
Confidence            899999999999999999988888765433     3333344444444 33455566777777777776554  778888


Q ss_pred             HHHHHHHHHHHHHHh-ccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHH
Q 011781          275 FGLLGIAWFSGFKIL-QEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHY  353 (477)
Q Consensus       275 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  353 (477)
                      ..++.++..++.... +|+.....+. .+..+      ..            ...++.+.+||+++.+.+...++-...+
T Consensus       201 a~~~l~~~~~~I~~~W~ENyg~~~~~-~~~~~------~~------------~~a~~~i~~d~ril~LG~~qslFE~smy  261 (354)
T PF05631_consen  201 AIVLLAVAAVLILKTWPENYGDTSSS-SSLSG------SF------------REAWRAILSDPRILLLGLIQSLFEGSMY  261 (354)
T ss_pred             HHHHHHHHHHHHHhcccccCCCcccc-cchHH------HH------------HHHHHHHHcCchhHHHHHHHHHHHHHHH
Confidence            777776665554433 3332221111 10000      00            0124577889999999999988888888


Q ss_pred             HHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhH
Q 011781          354 TCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADN  398 (477)
Q Consensus       354 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr  398 (477)
                      .+.....+-++.  +-...-.|++++.++++.++|..+..++..+
T Consensus       262 ~FVflWtPaL~~--~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~  304 (354)
T PF05631_consen  262 LFVFLWTPALDP--DDEELPLGLIFSSFMVAMMLGSSLFSRLLSK  304 (354)
T ss_pred             HheeeeeceecC--CCCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            777665555541  2223457899999999999999888765543

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.58  E-value=1.7e-13  Score=133.92  Aligned_cols=160  Identities=16%  Similarity=0.112  Sum_probs=127.3

Q ss_pred             hhHHHHhHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHH
Q 011781          130 KVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVL  208 (477)
Q Consensus       130 ~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (477)
                      ...+....|. +.+++|.++.+.+++.+...+..+++.++.|+++||+|+|+.+..+.....+..... ...++.+.+++
T Consensus       232 ~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~  310 (393)
T PRK15011        232 NSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGM-LMAHSPAILLG  310 (393)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH-HHHhhHHHHHH
Confidence            3334445665 456789999999999888888888899999999999999998877655544443333 34556666777


Q ss_pred             HHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHHHHH
Q 011781          209 SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKI  288 (477)
Q Consensus       209 ~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  288 (477)
                      .+++.+++.+...+....+..+..| +++++++++++...++|..++|.++|.+.+.+||+..|++.+++.++.++..++
T Consensus       311 ~~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK15011        311 LQLLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR  389 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            8888888777777777788888887 569999999999999999999999999999999999999888888777777766


Q ss_pred             hcc
Q 011781          289 LQE  291 (477)
Q Consensus       289 ~~~  291 (477)
                      .++
T Consensus       390 ~~~  392 (393)
T PRK15011        390 IKD  392 (393)
T ss_pred             hcC
Confidence            643

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.57  E-value=2.7e-13  Score=132.84  Aligned_cols=162  Identities=20%  Similarity=0.134  Sum_probs=132.0

Q ss_pred             hhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q 011781          130 KVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLS  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (477)
                      ......+.+.+..+.|.  .+.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++.. ..++.+.+++.
T Consensus       232 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  308 (399)
T PRK05122        232 FGTIATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLW-LAPSPWMALIG  308 (399)
T ss_pred             HHHHHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-HhccHHHHHHH
Confidence            33344455555555665  3456777888899999999999999999999999888887777776664 45566677788


Q ss_pred             HHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHHHHHh
Q 011781          210 RVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL  289 (477)
Q Consensus       210 ~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  289 (477)
                      .++.|++.+...+.....+.+..|+++|++++|+++....+|..+++.+.|.+.+..||++.|++.+++.++..+...++
T Consensus       309 ~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (399)
T PRK05122        309 AALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLL  388 (399)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            89999999988888888888999999999999999999999999999999999999999999999888888777666666


Q ss_pred             ccCCc
Q 011781          290 QEGET  294 (477)
Q Consensus       290 ~~~~~  294 (477)
                      +++++
T Consensus       389 ~~~~~  393 (399)
T PRK05122        389 YRRAP  393 (399)
T ss_pred             ccccc
Confidence            55443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.56  E-value=1.8e-13  Score=133.13  Aligned_cols=163  Identities=16%  Similarity=0.019  Sum_probs=138.4

Q ss_pred             HHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhh
Q 011781          121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA  200 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~  200 (477)
                      +..++.......+..+.|.+.+++|.++.++|++.++..++.+++.++.+++.||+|+|+.+.++.++..+...+++ ..
T Consensus       212 ~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~-~~  290 (382)
T TIGR00902       212 AAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIG-AI  290 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHH-hH
Confidence            33444455555566677777778999999999999999999999999999999999999999999999888887775 57


Q ss_pred             chHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHH-hhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHH
Q 011781          201 GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVF-GGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLG  279 (477)
Q Consensus       201 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~  279 (477)
                      ++.+.+++.+++.|++.+...+....++.+. |+++++++.++++ ...++|.++||.++|++.+++|+ ..|++.+++.
T Consensus       291 ~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~  368 (382)
T TIGR00902       291 EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIA  368 (382)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHH
Confidence            7778889999999999999999999999998 8889999999986 56789999999999999999997 5777777777


Q ss_pred             HHHHHHH
Q 011781          280 IAWFSGF  286 (477)
Q Consensus       280 ~~~~~~~  286 (477)
                      ++.+++.
T Consensus       369 ~~~~~~~  375 (382)
T TIGR00902       369 AAAFFLI  375 (382)
T ss_pred             HHHHHHH
Confidence            6654443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.56  E-value=4e-13  Score=135.10  Aligned_cols=170  Identities=12%  Similarity=0.093  Sum_probs=126.5

Q ss_pred             HHhhhhHHHHhHHhhh-hhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHH-HH-Hhhch
Q 011781          126 CNMDKVNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATAL-LP-LLAGF  202 (477)
Q Consensus       126 ~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~-~~-~~~~~  202 (477)
                      ..........+.|.+. +++|.+..+.++......++..++.++.|+++||+|||+.+..+.++..++... +. ..+++
T Consensus       262 ~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~  341 (490)
T PRK10642        262 TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNV  341 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3344445555677654 668998888888888888999999999999999999999988776543333222 21 12344


Q ss_pred             HHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhccc-ChhHHHHHHHHHHHH
Q 011781          203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-GWESVFYIFGLLGIA  281 (477)
Q Consensus       203 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~-g~~~~~~~~~~~~~~  281 (477)
                      ...+++.+++.|++.+........++.+.+|++.|++++|+......+++.++|.+.+++.+.. +|+.++++..+.+++
T Consensus       342 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i  421 (490)
T PRK10642        342 IGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVI  421 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            5667778888888777777777888899999999999999865556677789999999988765 477777776666666


Q ss_pred             HHHHHHHhccCCcC
Q 011781          282 WFSGFKILQEGETS  295 (477)
Q Consensus       282 ~~~~~~~~~~~~~~  295 (477)
                      .++..++++|+++.
T Consensus       422 ~~~~~~~~pes~~~  435 (490)
T PRK10642        422 GLITGVTMKETANR  435 (490)
T ss_pred             HHHHHHHhccccCC
Confidence            66666677776654

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.56  E-value=2.5e-13  Score=127.61  Aligned_cols=182  Identities=17%  Similarity=0.140  Sum_probs=154.2

Q ss_pred             CchhHHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHH
Q 011781          109 IPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLI  188 (477)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~  188 (477)
                      ..++++++..+....+........+.+.-|.+.+..|++...++++..++.++..+|+++.|++.|| +.|+.+.....+
T Consensus       207 ~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l  285 (394)
T COG2814         207 LLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLL  285 (394)
T ss_pred             HhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHH
Confidence            3345566666666766677777788888888999999999999999999999999999999999999 999999988888


Q ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccCh
Q 011781          189 WSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW  268 (477)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~  268 (477)
                      .++..+.+.+..++.+..++..++.|+............+++ ..|+.++.+.+++....++|..+|..++|.+.+++|+
T Consensus       286 ~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~  364 (394)
T COG2814         286 LALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGY  364 (394)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence            888887777777777777778888888877777777777777 3358999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhccC
Q 011781          269 ESVFYIFGLLGIAWFSGFKILQEG  292 (477)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~  292 (477)
                      ....++.+++.++.+++.+...+.
T Consensus       365 ~~~~~~~a~l~~~a~~~~~~~~~~  388 (394)
T COG2814         365 AATGWVGAALLLLALLLALLSARK  388 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999888877776655443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.56  E-value=2.5e-13  Score=132.62  Aligned_cols=154  Identities=18%  Similarity=0.092  Sum_probs=124.4

Q ss_pred             hHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 011781          136 AIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGI  215 (477)
Q Consensus       136 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  215 (477)
                      ..+.+.++.|.+..+.+++.+...++.+++.++.|++.||+++|+.. .+..+..++........++.+.++++.++.|+
T Consensus       228 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~  306 (390)
T PRK03545        228 IEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAANSEWHLSVLSIFWGI  306 (390)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence            34445666899999999999999999999999999999999988654 44444444443333345666777888899999


Q ss_pred             hccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHHHHHhcc
Q 011781          216 GEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQE  291 (477)
Q Consensus       216 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  291 (477)
                      +.+...+.....+.+..| ++|++++|+++....+|..+||+++|.+.+++|++..|++.+++.++..+......+
T Consensus       307 ~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        307 AIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            887777778888888876 689999999999999999999999999999999999999998888776666555443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.55  E-value=7.5e-14  Score=135.46  Aligned_cols=153  Identities=16%  Similarity=0.124  Sum_probs=126.3

Q ss_pred             hHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhc-hHHHHHHH
Q 011781          131 VNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG-FMPGLVLS  209 (477)
Q Consensus       131 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  209 (477)
                      .......+.+.+++|.+..+.+++.++..++..++.++.|++.||+|||+.+.++.++.+++.++...... ....+++.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (377)
T TIGR00890       222 LLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLAT  301 (377)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHH
Confidence            33344455566788999989999999999999999999999999999999998888877777665543222 22234456


Q ss_pred             HHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHH
Q 011781          210 RVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWF  283 (477)
Q Consensus       210 ~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~  283 (477)
                      .++.|++.+...+....++.|.+|+++|++++|+.+....+|..++|.+.|.+.+..||++.|++.+++.++.+
T Consensus       302 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       302 VALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            77888888888888888999999999999999999999999999999999999999999999999887766643

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.55  E-value=1e-12  Score=126.35  Aligned_cols=250  Identities=17%  Similarity=0.150  Sum_probs=167.9

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHhhhhh--hCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcC-hhHHHHHHHH
Q 011781          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHR--FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGG-RKVLQTGVLI  188 (477)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~~~  188 (477)
                      +||.+.+..+..++.....+++.+..-.+.++  .+.+.+..|++.++..++..++++.+|+...|.+. |+.++.+.++
T Consensus        32 ~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii  111 (488)
T KOG2325|consen   32 NWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLI  111 (488)
T ss_pred             chHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHH
Confidence            46788888888888888888887775555555  77888899999999999999999999999999986 8888889888


Q ss_pred             HHHHHHHHHHh---hc-hHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhc
Q 011781          189 WSLATALLPLL---AG-FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE  264 (477)
Q Consensus       189 ~~~~~~~~~~~---~~-~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~  264 (477)
                      ..++.++....   ++ ..+.++++|++.|+|.+.. ...-+++++....++|.++++....+..+|.++||.+...+..
T Consensus       112 ~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~  190 (488)
T KOG2325|consen  112 AIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTP  190 (488)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhh
Confidence            88888777333   33 5678899999999996654 6778889988878899999999999888888888887766542


Q ss_pred             c----c---------ChhHHHHHHHHHHHHHHHHHHH-hccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHH
Q 011781          265 N----L---------GWESVFYIFGLLGIAWFSGFKI-LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWK  330 (477)
Q Consensus       265 ~----~---------g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (477)
                      .    +         -+..+-|+.+++.++.++...+ ++|..+....+..+.++.   ++     .+..+.+..+.+  
T Consensus       191 Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~d--  260 (488)
T KOG2325|consen  191 LGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVEE---EK-----SDIEKVKKPKLD--  260 (488)
T ss_pred             hcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccchh---hc-----cchhhhccCChh--
Confidence            1    1         1345667777777766555444 444433332221111100   00     000001111111  


Q ss_pred             HHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHH
Q 011781          331 AIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAW  376 (477)
Q Consensus       331 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~  376 (477)
                          .+..+.+++..+...+.+....+..+.+....++.+..++-.
T Consensus       261 ----~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~  302 (488)
T KOG2325|consen  261 ----WVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVL  302 (488)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHH
Confidence                123344445555555555555666666666667776555433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.54  E-value=6.6e-14  Score=138.14  Aligned_cols=148  Identities=12%  Similarity=0.047  Sum_probs=125.0

Q ss_pred             hhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhccchhh
Q 011781          143 RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPS  222 (477)
Q Consensus       143 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  222 (477)
                      +.+.+..+.|++.++..++..++.+++|++.||+|+|+.+..+.++.+++.++.+ +.++.+.+++.+++.|++.+...+
T Consensus       256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~-~~~~~~~~~~~~~l~g~~~~~~~~  334 (420)
T PRK09528        256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSG-FATGPLEVSILKLLHAFEVPFLLV  334 (420)
T ss_pred             ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHH
Confidence            3466777889999999999999999999999999999999988888888777664 456667788889999998888888


Q ss_pred             hHHHHhhhhcCCcchhhHHHH-HHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHHHHHhcc
Q 011781          223 AATDLIARSIPLEERSRAVSF-VFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQE  291 (477)
Q Consensus       223 ~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  291 (477)
                      ....++.+.+|++.++...+. ++....+|.+++|.+.|++.+..||+..|.+.+++.++..++.++..+
T Consensus       335 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~  404 (420)
T PRK09528        335 GVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLS  404 (420)
T ss_pred             HHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhc
Confidence            888999999998888887665 677788999999999999999999999999988887766655554443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.54  E-value=2.5e-13  Score=133.43  Aligned_cols=161  Identities=23%  Similarity=0.077  Sum_probs=129.1

Q ss_pred             hhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHH
Q 011781          129 DKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVL  208 (477)
Q Consensus       129 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (477)
                      .......+.|.+.++.|.+..+.+++.+...++..++.++.|++.||+|+|+.+..+.+...++.+++. ..++.+.+.+
T Consensus       235 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  313 (406)
T PRK11551        235 VLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALA-AAPSFAGMLL  313 (406)
T ss_pred             HHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hcCcHHHHHH
Confidence            334445567787788999999999999999999999999999999999999998887666666555543 3445566677


Q ss_pred             HHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhccc-ChhHHHHHHHHHHHHHHHHHH
Q 011781          209 SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-GWESVFYIFGLLGIAWFSGFK  287 (477)
Q Consensus       209 ~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~  287 (477)
                      ..++.|++.+...+...+++.+.+|+++|++++|+.+....+|..+||.++|.+.++. +|...+++.+.+.++..+..+
T Consensus       314 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (406)
T PRK11551        314 AGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL  393 (406)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence            7788888888888889999999999999999999999999999999999999998875 456666666555555555544


Q ss_pred             Hhc
Q 011781          288 ILQ  290 (477)
Q Consensus       288 ~~~  290 (477)
                      .+.
T Consensus       394 ~~~  396 (406)
T PRK11551        394 LLV  396 (406)
T ss_pred             HHh
Confidence            443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.54  E-value=6.1e-14  Score=115.47  Aligned_cols=134  Identities=29%  Similarity=0.508  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCC
Q 011781          155 QSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPL  234 (477)
Q Consensus       155 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~  234 (477)
                      .+.+.++..++.++.|++.||+|||+.+..+..+..++.+... ..++.+.+.+.+++.|++.+...+....++.|.+|+
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   82 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFA-LSSNITVLIIARFLQGFGAAFALVAGAALIADIYPP   82 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCh
Confidence            3456778889999999999999999999998888777776664 456678888999999999999999999999999999


Q ss_pred             cchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHHHHHh
Q 011781          235 EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL  289 (477)
Q Consensus       235 ~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  289 (477)
                      ++|++++++.+....+|..++|.+++.+.+..+|++.+++.+++.++..+...++
T Consensus        83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (141)
T TIGR00880        83 EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFL  137 (141)
T ss_pred             hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999888777666555544

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.54  E-value=4.5e-13  Score=130.10  Aligned_cols=154  Identities=16%  Similarity=0.151  Sum_probs=125.6

Q ss_pred             HHhHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 011781          134 SVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVL  212 (477)
Q Consensus       134 ~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  212 (477)
                      ....|. +.+++|.++.+.+++.+...+...++.++.|++.||+|+|+.+..+.++..+..... ...++.+.+++.+++
T Consensus       219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  297 (375)
T TIGR00899       219 IINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGL-AADNSLWALLMLQLL  297 (375)
T ss_pred             HhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            334444 457789999999999888887788889999999999999999888766655544443 244556777778889


Q ss_pred             HHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHHHHHh
Q 011781          213 VGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL  289 (477)
Q Consensus       213 ~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  289 (477)
                      .|++.+...+....++.+..| +++++++++++....+|..++|.++|.+.+..||+..|++.+++.++..+...++
T Consensus       298 ~g~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  373 (375)
T TIGR00899       298 NAIFIGILAGIGMLYFQDLMP-GRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLI  373 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhee
Confidence            999888888888888999887 5677999999999999999999999999999999999999888887776666554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.54  E-value=1.4e-13  Score=135.42  Aligned_cols=161  Identities=19%  Similarity=0.157  Sum_probs=128.3

Q ss_pred             hhhHHHHhHHhhhhhhCCCcc----hhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHH
Q 011781          129 DKVNLSVAIIPMSHRFGWNSS----VAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMP  204 (477)
Q Consensus       129 ~~~~~~~~~~~~~~~~g~s~~----~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  204 (477)
                      ......+..+.+..+.+.+..    ..+.+.++..++..++.+..|++.||+|||+.+..+..+..++.+... ..++.+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~-~~~~~~  312 (408)
T PRK09874        234 ATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMS-FVQTPL  312 (408)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH-HhccHH
Confidence            334444555555555433333    245666677788889999999999999999999888777666665553 445567


Q ss_pred             HHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHH
Q 011781          205 GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFS  284 (477)
Q Consensus       205 ~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~  284 (477)
                      .+++.+++.|++.+...+...+.+.+..+++++|+.+++++....+|..+||.++|.+.+..||++.|++.+++.++..+
T Consensus       313 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~  392 (408)
T PRK09874        313 QLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAV  392 (408)
T ss_pred             HHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence            77888999999999999999999999999899999999999999999999999999999999999999999988887766


Q ss_pred             HHHHhc
Q 011781          285 GFKILQ  290 (477)
Q Consensus       285 ~~~~~~  290 (477)
                      ..++..
T Consensus       393 ~~~~~~  398 (408)
T PRK09874        393 YSWNSL  398 (408)
T ss_pred             HHHHHH
Confidence            655443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.54  E-value=5.5e-14  Score=130.34  Aligned_cols=186  Identities=18%  Similarity=0.099  Sum_probs=147.8

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHhhhhHHHHhHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhh--cChhHH
Q 011781          106 WKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF--GGRKVL  182 (477)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~  182 (477)
                      ..+..-+++.+..++++.++.+..+..+.-..|. +.+..|+|...+++..+++-++.+.|.+++|+++||+  |||...
T Consensus       244 ~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~  323 (448)
T COG2271         244 FVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPM  323 (448)
T ss_pred             HHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchH
Confidence            3344445577788888888999999888888877 6677899999999999999999999999999999995  677665


Q ss_pred             HHHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhh-HHHHHHhhh
Q 011781          183 QTGVLIWSLATALLPLLAG--FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF-GSVAGLLLA  259 (477)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~ig~~~~  259 (477)
                      .+...+....+++....++  +++...++.++.|+..-+..........|..|++..|.+.|+...+..+ |.+.+....
T Consensus       324 ~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~  403 (448)
T COG2271         324 ALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPL  403 (448)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcc
Confidence            5443333333333323443  3477788889999887777777778888999999999999999999998 999999999


Q ss_pred             HHhhcccChhHHHHHHHHHHHHHHHHHHHhcc
Q 011781          260 PPIIENLGWESVFYIFGLLGIAWFSGFKILQE  291 (477)
Q Consensus       260 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  291 (477)
                      |++.|.+||...|++..+.++++.++...+..
T Consensus       404 g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~  435 (448)
T COG2271         404 GYIADTWGWDGGFIVLSIAALLAILLLLPVWN  435 (448)
T ss_pred             eeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999988887776665554433

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.53  E-value=5.8e-13  Score=137.26  Aligned_cols=139  Identities=12%  Similarity=0.034  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhc
Q 011781          153 LVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSI  232 (477)
Q Consensus       153 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~  232 (477)
                      +...+..++.+++.++.|+++||+|||++++++.++.+++.++++ +.++...+++.+++.|++.+..++...++++|++
T Consensus       599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~-~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~  677 (742)
T TIGR01299       599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLS-FGNSESAMIALLCLFGGLSIAAWNALDVLTVELY  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            345567788899999999999999999999999999888887775 4444466777788888888888999999999999


Q ss_pred             CCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHHHHHhccCC
Q 011781          233 PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGE  293 (477)
Q Consensus       233 ~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (477)
                      |.+.|++++|+.++...+|.++||++++.+.+. +...+|++.+++.++.+++.+++||+.
T Consensus       678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~LPET~  737 (742)
T TIGR01299       678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALKLPDTR  737 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            999999999999999999999999999988764 466788888887777777777776543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.52  E-value=6.5e-13  Score=129.69  Aligned_cols=168  Identities=14%  Similarity=0.072  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHhhhhHHHHhHHhh-hhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChh--HHHH------HHHH
Q 011781          118 TTSLAFVICNMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK--VLQT------GVLI  188 (477)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~--~~~~------~~~~  188 (477)
                      ..++..+........+..+.|.+ .+++|.+..+.+++.+...++..++.++.|+++||+++|+  ....      +.++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (399)
T TIGR00893       219 GLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLV  298 (399)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH
Confidence            34444455555556666666664 5668999999999999999999999999999999999996  1111      1111


Q ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccC-
Q 011781          189 WSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-  267 (477)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g-  267 (477)
                      ..+...... ..++.+..+...++.+++ ....+...+++.|.+|+++|++++|+.+....+|..++|.+.|.+.+..| 
T Consensus       299 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~  376 (399)
T TIGR00893       299 LSLLMFATN-YVNIPYAALALVALGFFG-LGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGS  376 (399)
T ss_pred             HHHHHHHhc-cchhHHHHHHHHHHHHhc-hhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCc
Confidence            111111110 112323333333444444 34789999999999999999999999999999999999999999999988 


Q ss_pred             hhHHHHHHHHHHHHHHHHHH
Q 011781          268 WESVFYIFGLLGIAWFSGFK  287 (477)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~  287 (477)
                      |++.|++.+++.++..+..+
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       377 FAGALMVVAALALIGALSYL  396 (399)
T ss_pred             hhHHHHHHHHHHHHHHHHHH
Confidence            99999998887777655544

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.52  E-value=3.2e-13  Score=133.18  Aligned_cols=161  Identities=19%  Similarity=0.111  Sum_probs=131.6

Q ss_pred             HHHHhHHhhhhh-hCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 011781          132 NLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSR  210 (477)
Q Consensus       132 ~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (477)
                      .+....|.+.++ +|.+..+.|++.+...++..++.++.+++.||.++++.+..+.++.+++.+++. ..++.+...++.
T Consensus       241 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~  319 (417)
T PRK10489        241 AVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFG-LMPMWILAVLCL  319 (417)
T ss_pred             hHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHH-ccchHHHHHHHH
Confidence            344556666666 899999999999999999999999999999998888888887777777666553 556666677888


Q ss_pred             HHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHH-HHHHh
Q 011781          211 VLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFS-GFKIL  289 (477)
Q Consensus       211 ~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~  289 (477)
                      ++.|++.+...+...+++.+..|++.||+++|+++....+|..+||.+.|.+.+..|++..+++.+++.++..+ ....+
T Consensus       320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  399 (417)
T PRK10489        320 ALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVL  399 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhc
Confidence            88999888777888889999999899999999999999999999999999999999999888887776655444 44444


Q ss_pred             ccCC
Q 011781          290 QEGE  293 (477)
Q Consensus       290 ~~~~  293 (477)
                      ++.+
T Consensus       400 ~~~~  403 (417)
T PRK10489        400 GELR  403 (417)
T ss_pred             cccc
Confidence            4443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.51  E-value=7.3e-13  Score=127.13  Aligned_cols=165  Identities=28%  Similarity=0.356  Sum_probs=143.6

Q ss_pred             HHHHHhhhhHHHHhHHhhhhhh-CCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChh-HHHHHHHHHHHHHHHHHHhh
Q 011781          123 FVICNMDKVNLSVAIIPMSHRF-GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK-VLQTGVLIWSLATALLPLLA  200 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-~~~~~~~~~~~~~~~~~~~~  200 (477)
                      .+.............|.+.++. |.+..+.++..+...++..++.++.+++.||+|+|+ .+..+..+..++.+... ..
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  262 (352)
T cd06174         184 FFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLA-LA  262 (352)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-Hh
Confidence            3444455566666677766554 999999999999999999999999999999999999 99888888888877774 45


Q ss_pred             chHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHH
Q 011781          201 GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGI  280 (477)
Q Consensus       201 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~  280 (477)
                      ++.+.+++..++.|++.+...+....++.+..|+++|++.+|+.+....+|..++|.+.+.+.+..+|++.+++.+++.+
T Consensus       263 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~  342 (352)
T cd06174         263 PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALAL  342 (352)
T ss_pred             ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHH
Confidence            55678889999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHH
Q 011781          281 AWFSGFKI  288 (477)
Q Consensus       281 ~~~~~~~~  288 (477)
                      +..+..++
T Consensus       343 i~~i~~~~  350 (352)
T cd06174         343 LAALLLLL  350 (352)
T ss_pred             HHHHHhee
Confidence            87666543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.51  E-value=3.6e-12  Score=124.25  Aligned_cols=339  Identities=17%  Similarity=0.105  Sum_probs=211.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcc-hhhHHHHHH----HHHHHHhhhhhhhhhhhhcChhHHHHHHH
Q 011781          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSS-VAGLVQSSF----FWGYALSQLPGGWLAKIFGGRKVLQTGVL  187 (477)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~-~~g~~~~~~----~~~~~~~~~~~g~l~dr~g~r~~~~~~~~  187 (477)
                      +......++-.+...+.........+.....++.... ..+......    .+...+.++..|.++||+|||..+....+
T Consensus        21 ~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~  100 (463)
T KOG2816|consen   21 RHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLF  100 (463)
T ss_pred             hHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHH
Confidence            3445555555555556555555555555554443322 223333333    67788899999999999999999998877


Q ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHHhh--ccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcc
Q 011781          188 IWSLATALLPLLAGFMPGLVLSRVLVGIG--EGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN  265 (477)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~  265 (477)
                      ...+..++.. +.. +|.++    +.++.  .+.......++++|....++|...+|+.+.....+..++|.+++.+.+.
T Consensus       101 ~~~l~~~~~~-~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~  174 (463)
T KOG2816|consen  101 GTILPALCLL-FQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKF  174 (463)
T ss_pred             HHHHhHHHHH-HHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            7666665553 333 33333    44433  3456778889999999999999999999999999999999999999999


Q ss_pred             cChhHHHHHHHHHHHHHHHHHH-HhccCCcCCCCCC-CCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHH
Q 011781          266 LGWESVFYIFGLLGIAWFSGFK-ILQEGETSNGATL-APRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIY  343 (477)
Q Consensus       266 ~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  343 (477)
                      .|...+|.+..+..++..+... +++|+..++++.. ...+.... ........+    .  .......-.+|..+.+++
T Consensus       175 ~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~-~~~~~~~~~----~--~~~~~~~~~~r~~l~l~l  247 (463)
T KOG2816|consen  175 LGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPG-SLDSSHVAD----A--FQSLTKVGPDRLLLLLLL  247 (463)
T ss_pred             cCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCC-cccchhhhh----h--hhhhcccCCCccchHHHH
Confidence            9999999998888777655444 4455443333221 00000000 000000000    0  000111223455555555


Q ss_pred             HHHHhHHHHHHHhh-hhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhh-hchhHHHhcCcccceehhhhhHHhhhhh
Q 011781          344 AHFCGSWGHYTCLS-WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAA-QFADNLIATGVETTMVRKICQTIAFLSP  421 (477)
Q Consensus       344 ~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g-~l~dr~g~~~~~~~~~r~~~~~~~~~~~  421 (477)
                      ..++.......-.. .++.|+...++++..+.+.+.+..+....++.++.. .+...+|.+        + ....++..-
T Consensus       248 ~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~--------~-~i~lGl~~~  318 (463)
T KOG2816|consen  248 VAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEK--------R-LISLGLLSE  318 (463)
T ss_pred             HHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------h-HhhHHHHHH
Confidence            55554444433222 557788888999999999999999999999888776 667777665        3 555566655


Q ss_pred             HHHHhhhcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          422 AVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       422 ~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                      .+...+..+.  +..|.......+........+.........+.++++|.++++
T Consensus       319 ~~~~~~~af~--~~~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~  370 (463)
T KOG2816|consen  319 FLQLLLFAFA--TETWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGI  370 (463)
T ss_pred             HHHHHHHHHh--ccchhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhH
Confidence            6666555554  233443333334444344444444445555778889999876

>PRK12382 putative transporter; Provisional

Probab=99.51  E-value=1.4e-12  Score=127.56  Aligned_cols=158  Identities=20%  Similarity=0.190  Sum_probs=129.9

Q ss_pred             hhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHH
Q 011781          129 DKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVL  208 (477)
Q Consensus       129 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (477)
                      .......+.+.+.++.|.+  ..++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++.. ..++.+.+++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  307 (392)
T PRK12382        231 GFAVIGTFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLW-LAPTAWVALA  307 (392)
T ss_pred             HHhHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHH-HcccHHHHHH
Confidence            3334445555555666655  356667778888889999999999999999999988888777776654 4556677778


Q ss_pred             HHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHHHHH
Q 011781          209 SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKI  288 (477)
Q Consensus       209 ~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  288 (477)
                      ..++.|++.+...+.....+.+.+|+++|++++|+++....+|..+||.+.|++.++.||++.|.+.+++.++..+....
T Consensus       308 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        308 GAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence            88999999888888888899999999999999999999999999999999999999999999999998888776665554


Q ss_pred             h
Q 011781          289 L  289 (477)
Q Consensus       289 ~  289 (477)
                      .
T Consensus       388 ~  388 (392)
T PRK12382        388 S  388 (392)
T ss_pred             h
Confidence            4

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.50  E-value=1.4e-12  Score=127.00  Aligned_cols=155  Identities=15%  Similarity=0.147  Sum_probs=126.6

Q ss_pred             hHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 011781          131 VNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSR  210 (477)
Q Consensus       131 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (477)
                      .....++|.+.++.|.+..+.++..++..++.++++++.|++.||+|+|+++..+..+..++.+..  .. . .......
T Consensus       217 ~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~--~~-~-~~~~~~~  292 (381)
T PRK03633        217 GSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAM--LS-Q-AAMAPAL  292 (381)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHH--hh-h-HHHHHHH
Confidence            334455777777889999999999999999999999999999999999999988877766655443  22 2 3344566


Q ss_pred             HHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHHHHHh
Q 011781          211 VLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL  289 (477)
Q Consensus       211 ~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  289 (477)
                      ++.|++.....|...+.+.+..|+++++...+......++|.++||.++|++.++.||++.|++.+.+.++..+..++.
T Consensus       293 ~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  371 (381)
T PRK03633        293 FILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRK  371 (381)
T ss_pred             HHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence            7788877778899999999999888888888888889999999999999999999999999999888877665555444

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.50  E-value=8.8e-13  Score=131.86  Aligned_cols=173  Identities=14%  Similarity=0.061  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHhhhhHHHHhHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHH
Q 011781          117 GTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATAL  195 (477)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  195 (477)
                      ..+++..++..........+.|. +.+++|++..+.++..+...++..++.+++|+++||+|+|+.+.....+..++..+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~  340 (467)
T PRK09556        261 WLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTL  340 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHH
Confidence            33444444555555556667776 45679999999999999999999999999999999999998776654443333222


Q ss_pred             HH-HhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhh-HHHHHHhhhHHhhc---------
Q 011781          196 LP-LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF-GSVAGLLLAPPIIE---------  264 (477)
Q Consensus       196 ~~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~ig~~~~~~l~~---------  264 (477)
                      .. ...++...+.+.+++.|++.............|.+|++.+|.+.|+.+...++ |.+++|.+.|.+.+         
T Consensus       341 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~  420 (467)
T PRK09556        341 GVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIF  420 (467)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccc
Confidence            21 12344455667778888654444334446677999999999999999999886 77999999999999         


Q ss_pred             ---ccChhHHHHHHHHHHHHHHHHHHHh
Q 011781          265 ---NLGWESVFYIFGLLGIAWFSGFKIL  289 (477)
Q Consensus       265 ---~~g~~~~~~~~~~~~~~~~~~~~~~  289 (477)
                         ..||+..|++.+++.++..+...++
T Consensus       421 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        421 GYTLTGWAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             cccccChHHHHHHHHHHHHHHHHHHHHH
Confidence               5789999999877777765555544

>PRK03699 putative transporter; Provisional

Probab=99.50  E-value=1.4e-12  Score=127.56  Aligned_cols=169  Identities=14%  Similarity=0.183  Sum_probs=132.6

Q ss_pred             HHHHHHHhhhhHHHHhHHhhh-hhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHh
Q 011781          121 LAFVICNMDKVNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL  199 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~  199 (477)
                      +..++.......+..+.|.+. +++|++..+.+++.+.+.++..++.++.|+++||+++|+.+.....+..+...+.. .
T Consensus       212 ~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~  290 (394)
T PRK03699        212 IAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFV-N  290 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH-H
Confidence            333444444445556677655 67899999999999999999999999999999999999998877766555554443 4


Q ss_pred             hchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHH
Q 011781          200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLG  279 (477)
Q Consensus       200 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~  279 (477)
                      .++.+.+.+..++.|++.+..++...++..+..+ +++++..+.......+|..++|.+.|.+.+..|++..+++.+++.
T Consensus       291 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~  369 (394)
T PRK03699        291 TDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLY  369 (394)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHH
Confidence            4555566667788898888888888888887776 556788899999999999999999999999999999999888887


Q ss_pred             HHHHHHHHHhcc
Q 011781          280 IAWFSGFKILQE  291 (477)
Q Consensus       280 ~~~~~~~~~~~~  291 (477)
                      ++..+......+
T Consensus       370 ~~~~~~~~~~~~  381 (394)
T PRK03699        370 AVVFVMCILLGF  381 (394)
T ss_pred             HHHHHHHHHHHH
Confidence            776655555544

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.49  E-value=3.8e-12  Score=124.33  Aligned_cols=164  Identities=14%  Similarity=0.031  Sum_probs=126.0

Q ss_pred             HHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchH
Q 011781          124 VICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFM  203 (477)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~  203 (477)
                      ++..........+.|.+.+++|.+..+.|...+++.++.+++.++.|++.||+|+|+.+..+..+..++.+++....++.
T Consensus       215 ~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~  294 (393)
T PRK09705        215 GLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQL  294 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchH
Confidence            33444555566667776677899999999999999999999999999999999999998888777666665543333332


Q ss_pred             HHHHHHHHHHHhhccchhhhHHHHhhhhcC-CcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccC-hhHHHHHHHHHHHH
Q 011781          204 PGLVLSRVLVGIGEGVSPSAATDLIARSIP-LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVFYIFGLLGIA  281 (477)
Q Consensus       204 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g-~~~~~~~~~~~~~~  281 (477)
                      ..+  ..++.|++.+...+.......+..+ ++++++.+|+.+....++..++|.+.|++.+..| |...|++.+++.++
T Consensus       295 ~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~  372 (393)
T PRK09705        295 PVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVG  372 (393)
T ss_pred             HHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            222  2356688888888877777777774 5789999999999999999999999999999876 77778777766666


Q ss_pred             HHHHHHHh
Q 011781          282 WFSGFKIL  289 (477)
Q Consensus       282 ~~~~~~~~  289 (477)
                      ..+....+
T Consensus       373 ~~~~~~~~  380 (393)
T PRK09705        373 LMIITLRF  380 (393)
T ss_pred             HHHHHHHh
Confidence            55544443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.48  E-value=6.9e-13  Score=132.06  Aligned_cols=176  Identities=13%  Similarity=0.037  Sum_probs=118.9

Q ss_pred             HHHHHHHHHhhhhHHHHhHHhhhh-hhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhh--cChhHHH-HHHHHHHHHHH
Q 011781          119 TSLAFVICNMDKVNLSVAIIPMSH-RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF--GGRKVLQ-TGVLIWSLATA  194 (477)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~~-~~~~~~~~~~~  194 (477)
                      ..+..++..........++|.+.+ +.|.+..+.+++..++.++..++.++.|+++||+  +||+... ....+..++.+
T Consensus       258 ~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~  337 (452)
T PRK11273        258 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI  337 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHH
Confidence            333333444444455567777554 5789999999999999999999999999999999  5554322 22222233322


Q ss_pred             HHHHh-hchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHH-HHhhhHHhhcccChhHHH
Q 011781          195 LLPLL-AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVA-GLLLAPPIIENLGWESVF  272 (477)
Q Consensus       195 ~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i-g~~~~~~l~~~~g~~~~~  272 (477)
                      ++... ..+.+..+++.++.|.+..........+..+.+|+++||+++|+.+....+|+.+ +|.++|.+.++.||+..|
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f  417 (452)
T PRK11273        338 VYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGF  417 (452)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHH
Confidence            22111 2233334445555555433333344456779999999999999999988888654 799999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccCCc
Q 011781          273 YIFGLLGIAWFSGFKILQEGET  294 (477)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~  294 (477)
                      ++.++++++.++....+...++
T Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~  439 (452)
T PRK11273        418 MVMIGGSILAVILLIVVMIGEK  439 (452)
T ss_pred             HHHHHHHHHHHHHHHHHhcccc
Confidence            9988887777666665554443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.48  E-value=1.7e-12  Score=128.60  Aligned_cols=171  Identities=14%  Similarity=0.021  Sum_probs=116.4

Q ss_pred             HHHHHHHHhhhhHHHHhHHhhh-hhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhh--cChhHH-HHHHHHHHHHHHH
Q 011781          120 SLAFVICNMDKVNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF--GGRKVL-QTGVLIWSLATAL  195 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~-~~~~~~~~~~~~~  195 (477)
                      .+..+...........+.|.+. +++|++..+.+...+.+.++..++.++.|+++||+  ++|+.. ....+...+....
T Consensus       249 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~  328 (434)
T PRK11663        249 SFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGS  328 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHH
Confidence            3334444444555556666655 67899999999999999999999999999999998  333332 2211111111111


Q ss_pred             HH-HhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHH
Q 011781          196 LP-LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYI  274 (477)
Q Consensus       196 ~~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~  274 (477)
                      .. ....+.....+..+..|++...........+.+.+|+++|++++|+.+....+|.+++|.+.|++.++.||+..|++
T Consensus       329 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~  408 (434)
T PRK11663        329 LWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVV  408 (434)
T ss_pred             HHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHH
Confidence            11 11222233333444455443333333445678889989999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhc
Q 011781          275 FGLLGIAWFSGFKILQ  290 (477)
Q Consensus       275 ~~~~~~~~~~~~~~~~  290 (477)
                      .+++.++..+......
T Consensus       409 ~~~~~~~~~~~~~~~~  424 (434)
T PRK11663        409 ISIAAGISALLLLPFL  424 (434)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9888877666555443

>TIGR00897 2A0118 polyol permease family

Probab=99.48  E-value=1.7e-12  Score=127.33  Aligned_cols=167  Identities=13%  Similarity=0.102  Sum_probs=126.7

Q ss_pred             HHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHH-HHHHHHHHHHHHHHHh
Q 011781          121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQ-TGVLIWSLATALLPLL  199 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-~~~~~~~~~~~~~~~~  199 (477)
                      +..++..........+.|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+.+...
T Consensus       229 ~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~  308 (402)
T TIGR00897       229 MVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYI  308 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555666788888889999999999999999999999999999999999988764 3333333332222111


Q ss_pred             ----hchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHH
Q 011781          200 ----AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIF  275 (477)
Q Consensus       200 ----~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~  275 (477)
                          .++.+..++..++.|++.+...+ ....+.+.. +++|++++|+.+....+|..++|.++|.+.+..||+..+++.
T Consensus       309 ~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~  386 (402)
T TIGR00897       309 PQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIF  386 (402)
T ss_pred             HHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence                23445666778888888776544 445666654 478999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 011781          276 GLLGIAWFSGFKIL  289 (477)
Q Consensus       276 ~~~~~~~~~~~~~~  289 (477)
                      +++.++..+...++
T Consensus       387 a~~~~i~~~~~~~~  400 (402)
T TIGR00897       387 AALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHHHHHHh
Confidence            98887776666554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.46  E-value=5.8e-13  Score=130.08  Aligned_cols=163  Identities=15%  Similarity=0.135  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHhhhhHHHHhHHhhh-hhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHH-HH
Q 011781          118 TTSLAFVICNMDKVNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT-AL  195 (477)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~-~~  195 (477)
                      ......+...........+.|.+. +++|.+..+.+...+...++..++.++.|+++||+|||+.+..+..+..+.. .+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~  302 (394)
T TIGR00883       223 LGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPL  302 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence            333444444455555666667655 7789999999999999999999999999999999999998775544433322 12


Q ss_pred             HHHh--hchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHH-HhhhhhHHHHHHhhhHHhhcccC-hhHH
Q 011781          196 LPLL--AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFV-FGGLSFGSVAGLLLAPPIIENLG-WESV  271 (477)
Q Consensus       196 ~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~ig~~~~~~l~~~~g-~~~~  271 (477)
                      ....  .++.+.+++..++.|++.+...+...+++.|.+|+++|++++++. +....+|..++|.++|.+.++.| |++.
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~  382 (394)
T TIGR00883       303 LMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAI  382 (394)
T ss_pred             HHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhH
Confidence            2112  234556667778888888888899999999999999999999984 55667899999999999999988 8887


Q ss_pred             HHHHHHHHH
Q 011781          272 FYIFGLLGI  280 (477)
Q Consensus       272 ~~~~~~~~~  280 (477)
                      ++...++.+
T Consensus       383 ~~~~~~~~l  391 (394)
T TIGR00883       383 GYYLAALAL  391 (394)
T ss_pred             HHHHHHHHH
Confidence            777665444

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.46  E-value=9.7e-11  Score=110.77  Aligned_cols=333  Identities=13%  Similarity=0.067  Sum_probs=216.3

Q ss_pred             HHhHHhhhhh-hCCCcchhh-HHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 011781          134 SVAIIPMSHR-FGWNSSVAG-LVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRV  211 (477)
Q Consensus       134 ~~~~~~~~~~-~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (477)
                      ....|++.+. .|++..++. -+.-+..=.+....++...+.|.++.|++++++.+...+...++ .+.++...+-+..+
T Consensus        24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~ll-l~~~sv~~mq~~q~  102 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLL-LFGTSVLAMQLMQF  102 (412)
T ss_pred             ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-HHHCcHHHHHHHHH
Confidence            3345555554 788887764 34445555667778888999999999999999988776666665 57788899999999


Q ss_pred             HHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhc--ccChhHHHHHHHHHHHHHHHHHHHh
Q 011781          212 LVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE--NLGWESVFYIFGLLGIAWFSGFKIL  289 (477)
Q Consensus       212 l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~  289 (477)
                      +.|++.+. ..+..+++-...|+++-.++.+...++..+|..++.++|-.+..  ..+++...++......++++..+++
T Consensus       103 ~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fL  181 (412)
T PF01770_consen  103 FYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFL  181 (412)
T ss_pred             HHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence            99998654 67888888888899999999999999999999999999988775  3456666666666666667777777


Q ss_pred             ccCCcCCCCCCCCc-------chhhhhhhhhhhhHHhhcc-CCC-----------CCCHHHHhhcHHHHHHHHHHHHhHH
Q 011781          290 QEGETSNGATLAPR-------SNYINMKKSLSASLEEMGE-SLK-----------DVPWKAIFRSKAVWAMIYAHFCGSW  350 (477)
Q Consensus       290 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~  350 (477)
                      |.+++..--.+...       .+.....+......+..++ ...           ...+++..++|.++...+-..+..+
T Consensus       182 P~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atc  261 (412)
T PF01770_consen  182 PMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATC  261 (412)
T ss_pred             CCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence            76554221111000       0000000000000000000 000           1224455678888888888888888


Q ss_pred             HHHHHhhhhhHHHHHh--hCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhh
Q 011781          351 GHYTCLSWLPTYFSEE--LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLS  428 (477)
Q Consensus       351 ~~~~~~~~~~~~~~~~--~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~  428 (477)
                      ++....+|......+.  -+-+...-|.+-++..+.+.++.+..|++..++.+.       ....+....++.+.+++++
T Consensus       262 gy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~-------~~l~l~~~S~l~a~~L~lm  334 (412)
T PF01770_consen  262 GYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRW-------GELALGVFSLLQAGLLFLM  334 (412)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHH-------HHHHHHHHHHHHHHHHHHH
Confidence            8888888887777653  133444567888888888999999999986666543       1222222223323333333


Q ss_pred             cccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhhc
Q 011781          429 SIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYLE  476 (477)
Q Consensus       429 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl~  476 (477)
                      .. ..+.+...++.++++............-+...+..|.-|-++|++
T Consensus       335 ~~-t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiN  381 (412)
T PF01770_consen  335 SF-TGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGIN  381 (412)
T ss_pred             HH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeH
Confidence            32 233344455556666666666666666677777778888888764

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.46  E-value=2.1e-12  Score=130.47  Aligned_cols=149  Identities=16%  Similarity=0.148  Sum_probs=115.9

Q ss_pred             HHHhHHhhh-hhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHh-hchHHHHHHHH
Q 011781          133 LSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL-AGFMPGLVLSR  210 (477)
Q Consensus       133 ~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  210 (477)
                      ....+|.+. +++|.+..+.+++.+...++..++.++.|+++||+|+|+++..+.++..+..++.... ..+.+.+.+..
T Consensus       294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLL  373 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            445667765 5899999999999999999999999999999999999999888776655554433222 23333344444


Q ss_pred             HHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHH
Q 011781          211 VLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIA  281 (477)
Q Consensus       211 ~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~  281 (477)
                      ++.++......+....++.+.+|+++|++++|+.+....+|..+||.++|.+.+.+||+..+.+.+....+
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~  444 (496)
T PRK03893        374 FFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF  444 (496)
T ss_pred             HHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence            55444444455677788999999999999999999999999999999999999999999888766554433

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.46  E-value=1.1e-11  Score=124.30  Aligned_cols=157  Identities=12%  Similarity=0.100  Sum_probs=121.3

Q ss_pred             hHHhhhhhhCCCcchhhHHHH-HHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHH---HHhhchHHHHHHHHH
Q 011781          136 AIIPMSHRFGWNSSVAGLVQS-SFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL---PLLAGFMPGLVLSRV  211 (477)
Q Consensus       136 ~~~~~~~~~g~s~~~~g~~~~-~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  211 (477)
                      ..|.+.+++|++..+++++.. ...++.+++.+++|+++||+|+|+.+.++.++.++..+++   ....++.+.+.+..+
T Consensus       245 ~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~  324 (491)
T PRK11010        245 TTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVF  324 (491)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            344556779999999999974 6668999999999999999999988776655544433322   111234344455566


Q ss_pred             HHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHHHHHhcc
Q 011781          212 LVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQE  291 (477)
Q Consensus       212 l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  291 (477)
                      +..++.+...+...++..+..+++.+++.+++.+....+|..+++.+.|.+.+..||+..|.+.++++++..+....+++
T Consensus       325 l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~  404 (491)
T PRK11010        325 FENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ  404 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            65555566667778888899998899999999999999999999999999999999999999998888887777766654


Q ss_pred             C
Q 011781          292 G  292 (477)
Q Consensus       292 ~  292 (477)
                      +
T Consensus       405 ~  405 (491)
T PRK11010        405 T  405 (491)
T ss_pred             c
Confidence            3

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.46  E-value=4.3e-13  Score=133.35  Aligned_cols=163  Identities=18%  Similarity=0.166  Sum_probs=127.6

Q ss_pred             HHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhh--cChhHHHHH--HHHHHHHHHHH
Q 011781          121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF--GGRKVLQTG--VLIWSLATALL  196 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~~~~--~~~~~~~~~~~  196 (477)
                      ...++..........+++.+.+++|.+..+.+++.++..++.++++++.|++.||.  ++|+...++  .++.+++.+++
T Consensus       248 ~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~  327 (455)
T TIGR00892       248 SGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLC  327 (455)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444555566777778899999999999999999999999999999973  334333333  23333333333


Q ss_pred             HHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhccc-ChhHHHHHH
Q 011781          197 PLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-GWESVFYIF  275 (477)
Q Consensus       197 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~-g~~~~~~~~  275 (477)
                       ...++++.+++.+++.|++.+...+...+++.+.+|++++++.+|+++....+|.++||.++|.+.+.. +|++.|++.
T Consensus       328 -~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~  406 (455)
T TIGR00892       328 -ALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYAS  406 (455)
T ss_pred             -HHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHh
Confidence             345666778889999999999999999999999999999999999999999999999999999999887 599999998


Q ss_pred             HHHHHHHHH
Q 011781          276 GLLGIAWFS  284 (477)
Q Consensus       276 ~~~~~~~~~  284 (477)
                      +++.++..+
T Consensus       407 ~~~~li~~~  415 (455)
T TIGR00892       407 GSIVVSAGL  415 (455)
T ss_pred             hHHHHHHHH
Confidence            877665443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.44  E-value=2.8e-12  Score=128.66  Aligned_cols=177  Identities=16%  Similarity=0.102  Sum_probs=133.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHH
Q 011781          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (477)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (477)
                      ++.+...++..+...........+.|.+.+++|.+..+.++......++.+++.++.|+++||+|||+.+.++.++.+++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  362 (481)
T TIGR00879       283 RRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAIC  362 (481)
T ss_pred             HHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            34444455555555555556667788888899999988899999999999999999999999999999999887777666


Q ss_pred             HHHHHHh----hc------hHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHh
Q 011781          193 TALLPLL----AG------FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI  262 (477)
Q Consensus       193 ~~~~~~~----~~------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l  262 (477)
                      .+++...    .+      ....+....++.+.......+....++.|.+|+++|++++++.+...++|.+++|.+.+.+
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~  442 (481)
T TIGR00879       363 LFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTM  442 (481)
T ss_pred             HHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6555311    11      2222222333333332334466677789999999999999999999999999999999999


Q ss_pred             hcccChhHHHHHHHHHHHHHHHHHHHh
Q 011781          263 IENLGWESVFYIFGLLGIAWFSGFKIL  289 (477)
Q Consensus       263 ~~~~g~~~~~~~~~~~~~~~~~~~~~~  289 (477)
                      .++.+|++.|++.++++++..+..+++
T Consensus       443 ~~~~~~~~~f~~~~~~~~~~~i~~~~~  469 (481)
T TIGR00879       443 LESIGVGGVFIFFGGLNVLGLIFVYFF  469 (481)
T ss_pred             HHhcCccceehhHHHHHHHHHHHHhee
Confidence            999999999999888877766665543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09952 shikimate transporter; Provisional

Probab=99.43  E-value=5.8e-12  Score=124.79  Aligned_cols=165  Identities=15%  Similarity=0.122  Sum_probs=118.1

Q ss_pred             HhhhhHHHHhHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHH-h-h-ch
Q 011781          127 NMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL-L-A-GF  202 (477)
Q Consensus       127 ~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-~-~-~~  202 (477)
                      .........+.|. +.+++|.+......+..+..+...++.+++|+++||+|||+.+..+.++..++.+.+.. . . +.
T Consensus       263 ~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (438)
T PRK09952        263 LLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSI  342 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCCh
Confidence            3333444445554 45678888876666666667777888899999999999999988776655444332211 1 1 23


Q ss_pred             HHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhh-hhhHHHHHHhhhHHhhccc--ChhHHHHHHHHHH
Q 011781          203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGG-LSFGSVAGLLLAPPIIENL--GWESVFYIFGLLG  279 (477)
Q Consensus       203 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~ig~~~~~~l~~~~--g~~~~~~~~~~~~  279 (477)
                      .+.+++..++.+++.+...+...+++.|.+|++.|+.+.++.... ..+|+.++|.+.+++.+..  +|+..+.+.+++.
T Consensus       343 ~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~  422 (438)
T PRK09952        343 FWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGC  422 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence            344445566677887777888899999999999999899885544 5589999999999998754  4888888887777


Q ss_pred             HHHHHHHHHhcc
Q 011781          280 IAWFSGFKILQE  291 (477)
Q Consensus       280 ~~~~~~~~~~~~  291 (477)
                      ++..+..+.+++
T Consensus       423 ~i~~v~~~~~~~  434 (438)
T PRK09952        423 LISAMTALLMKD  434 (438)
T ss_pred             HHHHHHHHHccc
Confidence            777666665544

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.43  E-value=1.4e-12  Score=128.07  Aligned_cols=142  Identities=11%  Similarity=0.116  Sum_probs=115.0

Q ss_pred             HHHhHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 011781          133 LSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRV  211 (477)
Q Consensus       133 ~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (477)
                      .....|. +.+++|.+..+.+++.+...++..++.++.|++.||+|+|+.+.++.++.++..+......++.+.+.+..+
T Consensus       257 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (405)
T TIGR00891       257 IQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLF  336 (405)
T ss_pred             hhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence            3344444 556789999999999999999999999999999999999999888766553333322223445455666667


Q ss_pred             HHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccC-hhHHHHH
Q 011781          212 LVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVFYI  274 (477)
Q Consensus       212 l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g-~~~~~~~  274 (477)
                      +.|++.+...+....++.+.+|+++|++++|+.+....+|..++|+++|.+.++.| |+..+..
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       337 FQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            77777777778888999999999999999999999999999999999999999988 8766655

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.43  E-value=1.7e-12  Score=131.03  Aligned_cols=166  Identities=13%  Similarity=0.038  Sum_probs=110.9

Q ss_pred             hhhHHHHhHHhhhhhhCCCcchhhH------------HHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHH
Q 011781          129 DKVNLSVAIIPMSHRFGWNSSVAGL------------VQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL  196 (477)
Q Consensus       129 ~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  196 (477)
                      .........|.+.++.|.+....+.            ...+..++.+++.++.++++||+|||++++++.++.+++..+.
T Consensus       303 ~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l  382 (502)
T TIGR00887       303 AFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVL  382 (502)
T ss_pred             HHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Confidence            3333444577777888887543221            2234445666788899999999999999988877766665554


Q ss_pred             HHhhc---hHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcc--------
Q 011781          197 PLLAG---FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN--------  265 (477)
Q Consensus       197 ~~~~~---~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~--------  265 (477)
                      +...+   ....+....+...++.....+....+.+|.+|.+.|+++.|+.+....+|.+++|.+.+.+.+.        
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  462 (502)
T TIGR00887       383 GFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYP  462 (502)
T ss_pred             HHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccccc
Confidence            33221   1111121112222222334456677789999999999999999999999999999999998873        


Q ss_pred             --cChhHHHHHHHHHHHHHHHHHHHhccCCc
Q 011781          266 --LGWESVFYIFGLLGIAWFSGFKILQEGET  294 (477)
Q Consensus       266 --~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (477)
                        .++...|++.+++.++..+..+++||++.
T Consensus       463 ~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~  493 (502)
T TIGR00887       463 TGIWMGHVLEIFALFMFLGILFTLLIPETKG  493 (502)
T ss_pred             ccccchHHHHHHHHHHHHHHHHheEeccCCC
Confidence              34566778887777766665555565443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.43  E-value=8.9e-12  Score=121.33  Aligned_cols=155  Identities=17%  Similarity=0.081  Sum_probs=125.1

Q ss_pred             hhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHH
Q 011781          128 MDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV  207 (477)
Q Consensus       128 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (477)
                      .....+....|.+.++.|.+..++|.+.++..++..+..++.|++.||+|+|+.+..+.++.+++.++.. ..++.+.++
T Consensus       219 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~  297 (382)
T PRK11128        219 GSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMG-STTALPWLI  297 (382)
T ss_pred             HHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-hhhhHHHHH
Confidence            3344444555666677999999999999999999999999999999999999999998888887776664 566778888


Q ss_pred             HHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHH-hhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHH
Q 011781          208 LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVF-GGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSG  285 (477)
Q Consensus       208 ~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~  285 (477)
                      +..++.|++.+...+....++.+. +++++++..+..+ ....+|..+||.++|.+.+.+|+ ..|+..+++.++.+++
T Consensus       298 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T PRK11128        298 VIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALFI  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            899999999998889888888886 5567788899886 55678889999999999999987 4677666666554433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.41  E-value=7.9e-12  Score=124.63  Aligned_cols=162  Identities=20%  Similarity=0.138  Sum_probs=138.7

Q ss_pred             HhhhhHHHHhHHhhh-hhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHH
Q 011781          127 NMDKVNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPG  205 (477)
Q Consensus       127 ~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (477)
                      .+....+...+|.+. +++|.++..+|++.+.+.+|.+++.++.+++.+|+++++++..+.++++++.+.++ +.++.+.
T Consensus       231 ~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~la-l~~~~~~  309 (524)
T PF05977_consen  231 NLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLA-LSPSFWL  309 (524)
T ss_pred             HHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHh-cchHHHH
Confidence            333344445577755 56899999999999999999999999999999999999999888888888877774 6667788


Q ss_pred             HHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHH
Q 011781          206 LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSG  285 (477)
Q Consensus       206 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~  285 (477)
                      .++..++.|++.........+.+....|++.|||+++++.+....+..+|.++.|.+.+.+|.+..+.+.++..++..++
T Consensus       310 ~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~  389 (524)
T PF05977_consen  310 ALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALI  389 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            88889999999999999999999999999999999999999999999999999999999999999998887766665555


Q ss_pred             HHHh
Q 011781          286 FKIL  289 (477)
Q Consensus       286 ~~~~  289 (477)
                      ....
T Consensus       390 ~~~~  393 (524)
T PF05977_consen  390 ALRF  393 (524)
T ss_pred             HHHh
Confidence            4443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.41  E-value=1.6e-11  Score=121.20  Aligned_cols=179  Identities=18%  Similarity=0.147  Sum_probs=145.0

Q ss_pred             HHHHHHHHHHHHHHhhhhHH-HHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcCh--hHHHHHHHHHH
Q 011781          114 KLIGTTSLAFVICNMDKVNL-SVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGR--KVLQTGVLIWS  190 (477)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r--~~~~~~~~~~~  190 (477)
                      +.+...+++.++..-+.+.+ .....+..+++|++..+...+..+..+..++|++++|++.||+|.|  +++.++.+++.
T Consensus       281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~  360 (477)
T PF11700_consen  281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWI  360 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence            34444555555544444444 4445556668999999999999999999999999999999999999  88888777764


Q ss_pred             HHHHHHHHh--------hchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHh
Q 011781          191 LATALLPLL--------AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI  262 (477)
Q Consensus       191 ~~~~~~~~~--------~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l  262 (477)
                      +..+.. .+        .++.+.+++..++.|++.|..++..-++.+++.|+++.+..+|++....-....+||++.|.+
T Consensus       361 ~i~~~g-~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i  439 (477)
T PF11700_consen  361 IIPLYG-LFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLI  439 (477)
T ss_pred             HHHHHH-HHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444333 23        445578999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccC-hhHHHHHHHHHHHHHHHHHHHhccCC
Q 011781          263 IENLG-WESVFYIFGLLGIAWFSGFKILQEGE  293 (477)
Q Consensus       263 ~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (477)
                      .+..| .|+.+....++.++.+++...++.++
T Consensus       440 ~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~  471 (477)
T PF11700_consen  440 TDATGSQRYGFLFLLVLFLIGLILLFFVDVEK  471 (477)
T ss_pred             HHHhCCchhHHHHHHHHHHHHHHHHhhccchh
Confidence            99886 89999988888888777776665443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.40  E-value=1.6e-11  Score=118.76  Aligned_cols=172  Identities=19%  Similarity=0.245  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHhhhhHHHHhHHhhhhhhC-CCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHH
Q 011781          118 TTSLAFVICNMDKVNLSVAIIPMSHRFG-WNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL  196 (477)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  196 (477)
                      ...+..++.......+..+.+.+.++.| .+....+.+.++..++-++.-...+++..|+|.|+++.++.+.+++=..++
T Consensus       211 ~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~  290 (400)
T PF03825_consen  211 VFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLY  290 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            3444445666667777777788788888 777888988899999999999999999999999999999999999988887


Q ss_pred             HHhhchHHHHHHH----HHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhh-hhhHHHHHHhhhHHhhcccChhH-
Q 011781          197 PLLAGFMPGLVLS----RVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGG-LSFGSVAGLLLAPPIIENLGWES-  270 (477)
Q Consensus       197 ~~~~~~~~~~~~~----~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~ig~~~~~~l~~~~g~~~-  270 (477)
                      +..+++.+..++.    ..+.|+..+..+.+...++.+..|++.|+++.++++.. .++|.++|..++|++.+++|-+. 
T Consensus       291 a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~  370 (400)
T PF03825_consen  291 AYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGM  370 (400)
T ss_pred             HHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhh
Confidence            6554543443333    45699999999999999999999999999999998875 57999999999999999877543 


Q ss_pred             -----HHHHHHHHHHHHHHHHHHh
Q 011781          271 -----VFYIFGLLGIAWFSGFKIL  289 (477)
Q Consensus       271 -----~~~~~~~~~~~~~~~~~~~  289 (477)
                           .+.+.+++.++..+++.++
T Consensus       371 ~~~~~~~~v~a~~~~~~~~~f~~~  394 (400)
T PF03825_consen  371 FDWSAVFLVFAVMALVILVLFVIL  394 (400)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhh
Confidence                 4444454444444444433

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.39  E-value=3.9e-12  Score=123.33  Aligned_cols=191  Identities=17%  Similarity=0.073  Sum_probs=142.2

Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHH
Q 011781          105 PWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQT  184 (477)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~  184 (477)
                      .+++...|+.....+.+.......+......+...+.++.|++..++-+......+...+..+++..+.||+|||+.++.
T Consensus       261 ~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~  340 (485)
T KOG0569|consen  261 LLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLI  340 (485)
T ss_pred             HhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence            34444445555555555555666667777777888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh---chH--H---HHHHHHHHHHhhcc-chhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHH
Q 011781          185 GVLIWSLATALLPLLA---GFM--P---GLVLSRVLVGIGEG-VSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAG  255 (477)
Q Consensus       185 ~~~~~~~~~~~~~~~~---~~~--~---~~~~~~~l~g~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig  255 (477)
                      +..+..+..+++....   +..  |   ..+++.++..++.+ +..|..+-+.+|++|++.|+.++++......+..++-
T Consensus       341 ~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv  420 (485)
T KOG0569|consen  341 SLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIV  420 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHH
Confidence            9888777766553221   111  1   12344444444333 3468888999999999999999999999999999999


Q ss_pred             HhhhHHhhcccChhHHHHHHHHHHHH-HHHHHHHhccCCcCC
Q 011781          256 LLLAPPIIENLGWESVFYIFGLLGIA-WFSGFKILQEGETSN  296 (477)
Q Consensus       256 ~~~~~~l~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  296 (477)
                      ......+.+.+|- +.|++..+.+++ .+..+..+||++.+.
T Consensus       421 ~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~  461 (485)
T KOG0569|consen  421 GFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRT  461 (485)
T ss_pred             HHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCC
Confidence            9888888888886 566666655554 455666677776544

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.38  E-value=3.8e-12  Score=122.98  Aligned_cols=133  Identities=23%  Similarity=0.328  Sum_probs=115.3

Q ss_pred             HhHHhhhhh-hCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 011781          135 VAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLV  213 (477)
Q Consensus       135 ~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  213 (477)
                      ...|.+.++ +|.+..+.+++.+...++..++.++.+++.||++||+.+..+..+.+++..+.....++.+.+++..++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI  311 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence            566776654 8999999999999999999999999999999999999998887776666666543322367778889999


Q ss_pred             HhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccC
Q 011781          214 GIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG  267 (477)
Q Consensus       214 g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g  267 (477)
                      |++.+...+...+++.+..|+++|++++|+.+....+|..++|.++|.+.+.+|
T Consensus       312 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       312 GVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999999999988654

>PRK10504 putative transporter; Provisional

Probab=99.38  E-value=2e-11  Score=122.50  Aligned_cols=150  Identities=19%  Similarity=0.154  Sum_probs=119.5

Q ss_pred             HHHHHHHHHhhhhHHHHhHHhhhh-hhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHH
Q 011781          119 TSLAFVICNMDKVNLSVAIIPMSH-RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP  197 (477)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  197 (477)
                      .....++............|.+.+ .+|.++.+.++......++..++.++.|++.||+|+|+++..+.++.++..+++.
T Consensus       266 ~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~  345 (471)
T PRK10504        266 GLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFM  345 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence            344444444555556666777655 5899999999999999999989999999999999999999988887777665554


Q ss_pred             Hhh--chHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccCh
Q 011781          198 LLA--GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW  268 (477)
Q Consensus       198 ~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~  268 (477)
                      ...  ++.+.+.+..++.|++.+...+....++.+..|+++++.++++.+....+|..+|+.++|.+.+..|+
T Consensus       346 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        346 LVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             hccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            332  23333455667788888888889999999999999999999999999999999999999999877665

>PRK15075 citrate-proton symporter; Provisional

Probab=99.36  E-value=1.9e-11  Score=121.04  Aligned_cols=149  Identities=15%  Similarity=0.074  Sum_probs=105.6

Q ss_pred             HHHHHHHhhhhHHHHhHHhhhh-hhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHH-HHHH
Q 011781          121 LAFVICNMDKVNLSVAIIPMSH-RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA-LLPL  198 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~-~~~~  198 (477)
                      ...+...........+.|.+.+ .+|.+..+.++......++..++.+++|+++||+|||+.+..+.++..+... ....
T Consensus       245 ~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~  324 (434)
T PRK15075        245 LMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSW  324 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            3333344445556666777655 4799999999998899999999999999999999999988776544332221 1111


Q ss_pred             --hhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhh-hHHHHHHhhhHHhhcccChh
Q 011781          199 --LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLS-FGSVAGLLLAPPIIENLGWE  269 (477)
Q Consensus       199 --~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~g~~ig~~~~~~l~~~~g~~  269 (477)
                        ..++...+.+..++.+++.+...+....++.|.+|++.|+.++++...... +++.++|.+.|++.++.|++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        325 LVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence              122323333445556666666667777889999999999999998655444 56788999999999988864

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.36  E-value=1.9e-11  Score=119.83  Aligned_cols=152  Identities=14%  Similarity=0.147  Sum_probs=107.1

Q ss_pred             HHhhhhhhCCCcchhhHHHHHHH-HHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHH---HHhhchHHHHHHHHH-
Q 011781          137 IIPMSHRFGWNSSVAGLVQSSFF-WGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL---PLLAGFMPGLVLSRV-  211 (477)
Q Consensus       137 ~~~~~~~~g~s~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-  211 (477)
                      .+.+.+++|+++.+++++.+... ++.+++.+++|++.||+|+|+.+..+..+..+..+.+   ....++.+.+++..+ 
T Consensus       233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  312 (402)
T PRK11902        233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGI  312 (402)
T ss_pred             HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            44567779999999999986654 5688999999999999999998877666555443322   222244455554443 


Q ss_pred             ---HHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHHHHH
Q 011781          212 ---LVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKI  288 (477)
Q Consensus       212 ---l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  288 (477)
                         ..|++.+...+....++.+.+|.    +..++.+...++|.++++.++|.+.+.+||+..|.+.++++++..++...
T Consensus       313 ~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~  388 (402)
T PRK11902        313 ENLCGGMGTAAFVALLMALCNRSFSA----TQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL  388 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence               44455555566666666666654    34566666677888877889999999999999999998888777666555


Q ss_pred             hccC
Q 011781          289 LQEG  292 (477)
Q Consensus       289 ~~~~  292 (477)
                      .+.+
T Consensus       389 ~~~~  392 (402)
T PRK11902        389 MRGT  392 (402)
T ss_pred             Hhhh
Confidence            4433

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.35  E-value=3.8e-11  Score=117.88  Aligned_cols=325  Identities=17%  Similarity=0.130  Sum_probs=192.8

Q ss_pred             HHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhc-----ChhHHHHHHHHHHHHHHHHHHhhc---hHHH
Q 011781          134 SVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFG-----GRKVLQTGVLIWSLATALLPLLAG---FMPG  205 (477)
Q Consensus       134 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g-----~r~~~~~~~~~~~~~~~~~~~~~~---~~~~  205 (477)
                      ....+.+.+++|+++.+...+.++..+... ..++.|.++|-+.     ||+-++++.++..++.+.++..+.   +...
T Consensus        10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~   88 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI   88 (433)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence            445677889999999999988888887764 5678899999863     444455555554444444433333   4566


Q ss_pred             HHHHHHHHHhhccchhhhHHHHhhhhc--CCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHH
Q 011781          206 LVLSRVLVGIGEGVSPSAATDLIARSI--PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWF  283 (477)
Q Consensus       206 ~~~~~~l~g~~~~~~~~~~~~~i~~~~--~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~  283 (477)
                      ..++.++..+|.+.......+++.|..  .++.+|...+.......+|.+++..++|.+.+..++++.|.+.+++.++..
T Consensus        89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~  168 (433)
T PF03092_consen   89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML  168 (433)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence            677788889999999999999999988  334478888999999999999999999999999999999999888877776


Q ss_pred             HHHHHhccCCcCCCCCCCC-cchh-hhh-hhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHH-HHHHhHHHHHHHhhhh
Q 011781          284 SGFKILQEGETSNGATLAP-RSNY-INM-KKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIY-AHFCGSWGHYTCLSWL  359 (477)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~-~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~  359 (477)
                      +..+++.+++......+.. ..+. ... ....++.         ....++.++.|.+|...+ ..++............
T Consensus       169 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~  239 (433)
T PF03092_consen  169 IVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQ---------LSELWRALQQRAIWQPILFFIFFFNLPPSISSASS  239 (433)
T ss_pred             HHHHHhhhhccccccchhhcccccccchhhHHHHHH---------HHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccE
Confidence            6665555542211111000 0000 000 0000000         112457777888887666 3333322221111101


Q ss_pred             hHHHHHhhC---CchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcc--c---
Q 011781          360 PTYFSEELS---LNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSI--D---  431 (477)
Q Consensus       360 ~~~~~~~~g---~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~--~---  431 (477)
                      -.+..+..+   +++...+.+..+..++.++|..+..+...++.        .|+......++.....+.-..+  .   
T Consensus       240 fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~--------~R~~~~~t~~~~~~~~l~~~~lv~~~n~  311 (433)
T PF03092_consen  240 FYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWS--------WRRIFVVTTLVSVLASLFDLLLVTRWNL  311 (433)
T ss_pred             EEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHHhcccEEEEEEEee
Confidence            111123345   88888888877777777777776665444432        2344444443333322221111  0   


Q ss_pred             ---CCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhhc
Q 011781          432 ---LGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYLE  476 (477)
Q Consensus       432 ---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl~  476 (477)
                         .+..+..+.--++..........|......+..|+...|+.+|+.
T Consensus       312 ~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall  359 (433)
T PF03092_consen  312 DLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALL  359 (433)
T ss_pred             eeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence               111111222223333343334445555555556666689988864

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.35  E-value=2.1e-11  Score=119.05  Aligned_cols=156  Identities=15%  Similarity=0.037  Sum_probs=116.4

Q ss_pred             hhHHHHhHHhhhhhhCCCcchhhHHHHHHHH-HHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHh-----hchH
Q 011781          130 KVNLSVAIIPMSHRFGWNSSVAGLVQSSFFW-GYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL-----AGFM  203 (477)
Q Consensus       130 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~  203 (477)
                      ........+.+.+|.|++++++|++.....+ ...++.++.|++.||+|+|+.+..+.++.++..+.....     ..+.
T Consensus       224 ~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (390)
T TIGR02718       224 AVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGI  303 (390)
T ss_pred             HHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcH
Confidence            3333345566667789999999999888764 666778999999999999999888766553333222111     1222


Q ss_pred             HHHHHHHHHHHhhccchhhhHHHHhhhhcCC-cchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHH
Q 011781          204 PGLVLSRVLVGIGEGVSPSAATDLIARSIPL-EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW  282 (477)
Q Consensus       204 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~  282 (477)
                      ..++....+.+++.+...+...+.+.+..++ +++++.+++.+...++|..+||.++|.+.+..|++..|++.+++.++.
T Consensus       304 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a  383 (390)
T TIGR02718       304 AVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLA  383 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence            3334444556666777778888887787765 789999999999999999999999999999999999999887776665


Q ss_pred             HHH
Q 011781          283 FSG  285 (477)
Q Consensus       283 ~~~  285 (477)
                      .+.
T Consensus       384 ~~~  386 (390)
T TIGR02718       384 ILL  386 (390)
T ss_pred             HHH
Confidence            443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.34  E-value=6.6e-11  Score=117.10  Aligned_cols=145  Identities=13%  Similarity=0.058  Sum_probs=107.9

Q ss_pred             HHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhch-HHHHHHHHH
Q 011781          133 LSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLSRV  211 (477)
Q Consensus       133 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  211 (477)
                      +...+|.+.++.|.++.+.+.+.++..++..++.++.|++.||+|||+.+..+.++..+..+........ ...+.+..+
T Consensus       250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (426)
T PRK12307        250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLF  329 (426)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence            4456777777789999999999999999999999999999999999999888876665554443222222 122222222


Q ss_pred             HHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHH
Q 011781          212 LVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGL  277 (477)
Q Consensus       212 l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~  277 (477)
                      ..+++.....+....++.|.+|+++|++++|+......+|..++|.+.|++.+..|+....++..+
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~  395 (426)
T PRK12307        330 GLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVA  395 (426)
T ss_pred             HHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            222333334456667889999999999999999999999999999999999999887655444433

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.34  E-value=2.2e-11  Score=119.16  Aligned_cols=142  Identities=12%  Similarity=0.054  Sum_probs=116.9

Q ss_pred             CCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhccchhhhH
Q 011781          145 GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAA  224 (477)
Q Consensus       145 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  224 (477)
                      +.+....|++.++..+...++.++.|++.||+|+|+.+.++.++.++...+.. ..++.+.+++..++.|++........
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~  328 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSS-FATTALEVVILKMLHAFEVPFLLVGC  328 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHHHHHHH
Confidence            55666789999999999999999999999999999999998888877766654 45666777888999998876666666


Q ss_pred             HHHhhhhcCCcchhhHHHH-HHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHHHH
Q 011781          225 TDLIARSIPLEERSRAVSF-VFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFK  287 (477)
Q Consensus       225 ~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  287 (477)
                      ..+..+..+++.++...+. .+....+|.++++.++|++.+..||+..|.+.+++.++..+...
T Consensus       329 ~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~  392 (396)
T TIGR00882       329 FKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISV  392 (396)
T ss_pred             HHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            6677777787777777666 67889999999999999999999999999999888877655443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.34  E-value=8.6e-11  Score=114.73  Aligned_cols=146  Identities=16%  Similarity=0.137  Sum_probs=115.7

Q ss_pred             hHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 011781          136 AIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGI  215 (477)
Q Consensus       136 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  215 (477)
                      ..|.+.+++|++..+.+++.....++..++.++.+++.||.+ |+.+..+..+..+..+++....++.+.+.+..++.|+
T Consensus       239 ~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~  317 (394)
T PRK10213        239 IRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGL  317 (394)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            347777888999999999999999999999999999999964 4444444344333333332345556777788899999


Q ss_pred             hccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHH
Q 011781          216 GEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWF  283 (477)
Q Consensus       216 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~  283 (477)
                      +.+...+...+++.+..| +++++..+......++|..+||.++|.+.+..|++..++..+++.++..
T Consensus       318 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~  384 (394)
T PRK10213        318 TFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTA  384 (394)
T ss_pred             HHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHH
Confidence            999999999989998887 6677888888889999999999999999999999988888776655443

>TIGR01272 gluP glucose/galactose transporter

Probab=99.34  E-value=8e-11  Score=110.62  Aligned_cols=159  Identities=11%  Similarity=0.071  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHHhhhhHHHHhHHhhhh---hhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHH
Q 011781          116 IGTTSLAFVICNMDKVNLSVAIIPMSH---RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (477)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (477)
                      +....+..++..........+.+.+.+   .+|+++.+.++..+.+..+..++.++.+++.||+|+|+.+.++..+..++
T Consensus       142 ~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~  221 (310)
T TIGR01272       142 LVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLL  221 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            334445555555455555666666553   36999999999999999999999999999999999999988887776666


Q ss_pred             HHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHH
Q 011781          193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF  272 (477)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~  272 (477)
                      .++.. ..+. .......++.|++.+..+|...+...+..+ ++.+++.++. ....+|++++|.+.|.+.|..|.+..|
T Consensus       222 ~~l~~-~~~~-~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~-~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~  297 (310)
T TIGR01272       222 SIGAA-LTHG-YVAMWFVLALGLFNSIMFPTIFSLALNALG-RHTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAF  297 (310)
T ss_pred             HHHHH-HcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHH
Confidence            54443 3333 223346668899999999999999999887 4456777775 567799999999999999999999888


Q ss_pred             HHHHHH
Q 011781          273 YIFGLL  278 (477)
Q Consensus       273 ~~~~~~  278 (477)
                      ++..++
T Consensus       298 ~v~~~~  303 (310)
T TIGR01272       298 ALPVPC  303 (310)
T ss_pred             HHHHHH
Confidence            854443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.34  E-value=5.2e-11  Score=115.96  Aligned_cols=151  Identities=17%  Similarity=0.117  Sum_probs=110.4

Q ss_pred             HHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhh
Q 011781          137 IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIG  216 (477)
Q Consensus       137 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~  216 (477)
                      .|.+.+.+|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++.....++.+..++..++.+++
T Consensus       223 ~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g  302 (382)
T PRK10091        223 KPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAG  302 (382)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            45566678999999999999999999999999999999999999998888777777655543444445555666666666


Q ss_pred             ccchhhhHHHH-hhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcc-cChhHHHHHHHHHHHHHHHHHHHh
Q 011781          217 EGVSPSAATDL-IARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-LGWESVFYIFGLLGIAWFSGFKIL  289 (477)
Q Consensus       217 ~~~~~~~~~~~-i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~  289 (477)
                      .....+..... ..+..+++.++.+  ..+....+|.++||.++|++.+. .+|++.+.+.+++.++........
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (382)
T PRK10091        303 LFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLY  375 (382)
T ss_pred             HHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHH
Confidence            54444444433 3343344444443  34677889999999999999985 689999999887776654444433

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.34  E-value=1.6e-11  Score=119.26  Aligned_cols=155  Identities=15%  Similarity=0.108  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHhhhhHHHHhHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcC-hhHHH-HHH-HHHHHHH
Q 011781          118 TTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGG-RKVLQ-TGV-LIWSLAT  193 (477)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~-~~~-~~~~~~~  193 (477)
                      .+.+..+...........+.|. +.+++|.+..+.++..+...++..++.++.|++.||..+ |+... ... ....++.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~  299 (379)
T TIGR00881       220 YISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSL  299 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence            3334444444444555555665 456689999999999999999999999999999998643 33222 211 1111121


Q ss_pred             HHHHHh-hchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHH
Q 011781          194 ALLPLL-AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF  272 (477)
Q Consensus       194 ~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~  272 (477)
                      ...... ..+....++..++.|+......+....++.+.+|+++|+++.|+.+....+|..++|.+.|.+.++.||++.|
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       300 LVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            121111 2233455566677777666666667788999999999999999999999999999999999999999998754

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.34  E-value=8.8e-12  Score=123.77  Aligned_cols=148  Identities=16%  Similarity=0.193  Sum_probs=113.5

Q ss_pred             HHHHHHHHhhhhHHHHhHHhhhhh-hCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHH
Q 011781          120 SLAFVICNMDKVNLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL  198 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  198 (477)
                      ++..++............+.+.++ ++ +..+.+++.++..++.+++.+++++++||+|+|+.+..+.++..++.++...
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~  306 (437)
T TIGR00792       228 CLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFF  306 (437)
T ss_pred             HHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444333 34 5667788888889999999999999999999999999998887777666543


Q ss_pred             hhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcC-------CcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccCh
Q 011781          199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIP-------LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW  268 (477)
Q Consensus       199 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~  268 (477)
                      ..++.+.+++..++.|++.+...+...++++|..+       ++++|.++|+.+....+|..+++.+.|.+.+..||
T Consensus       307 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       307 AGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            33455666777888999999889999999998865       45679999999999999999999999999887766

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00895 2A0115 benzoate transport

Probab=99.33  E-value=7.7e-12  Score=122.33  Aligned_cols=141  Identities=21%  Similarity=0.205  Sum_probs=113.4

Q ss_pred             HHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhh
Q 011781          121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA  200 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~  200 (477)
                      +..++..........+.|.+.+++|.+..+.++..++..++..++.++.|++.||+|+|+.+... .+.++...++....
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~  335 (398)
T TIGR00895       257 LLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLL-LLGAVFAVLVGSTL  335 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH-HHHHHHHHHHHHHh
Confidence            33334444555566677888889999999999999999999999999999999999999554443 33333333332224


Q ss_pred             chHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHh
Q 011781          201 GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI  262 (477)
Q Consensus       201 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l  262 (477)
                      ++.+..++..++.|++.+...+...+++.+.+|+++|++++|+......+|..+||.++|.+
T Consensus       336 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       336 FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            45566778889999999999999999999999999999999999999999999999999876

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.33  E-value=4.8e-11  Score=119.99  Aligned_cols=163  Identities=11%  Similarity=-0.011  Sum_probs=121.1

Q ss_pred             HhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhh--chH-
Q 011781          127 NMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA--GFM-  203 (477)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~-  203 (477)
                      ..+......+.|.+.++.|.+....++......+..+++.++.++++||+|||++++.+.++.+++.+++....  +.. 
T Consensus       284 ~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~  363 (479)
T PRK10077        284 FVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPG  363 (479)
T ss_pred             HhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCccc
Confidence            33444555667888888999888777787788888999999999999999999999999888888776654321  111 


Q ss_pred             HHHHHHHHHHHhhccc-hhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHh------hcccChhHHHHHHH
Q 011781          204 PGLVLSRVLVGIGEGV-SPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI------IENLGWESVFYIFG  276 (477)
Q Consensus       204 ~~~~~~~~l~g~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l------~~~~g~~~~~~~~~  276 (477)
                      .....+.++.+++.+. ..+....+++|.+|+++|++++|+......+|.++++.+.+.+      .+..+|++.|++.+
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  443 (479)
T PRK10077        364 IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYG  443 (479)
T ss_pred             HHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHH
Confidence            1223334444444433 3467789999999999999999999999999999887666544      35788999999988


Q ss_pred             HHHHHHHHHHHHh
Q 011781          277 LLGIAWFSGFKIL  289 (477)
Q Consensus       277 ~~~~~~~~~~~~~  289 (477)
                      +++++.++..+++
T Consensus       444 ~~~~~~~~~~~~~  456 (479)
T PRK10077        444 CMGVLAALFMWKF  456 (479)
T ss_pred             HHHHHHHHHHHhc
Confidence            7776665555443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=99.33  E-value=4.4e-09  Score=101.46  Aligned_cols=351  Identities=13%  Similarity=0.011  Sum_probs=196.8

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHhHHhhhhhhC-CCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHH-
Q 011781          115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFG-WNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA-  192 (477)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~-  192 (477)
                      ....+....++...+.-++....+.+..+.. -+---.+...-.-.+..+++++..|.+.||..|.++...+.+..-++ 
T Consensus         3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv   82 (432)
T PF06963_consen    3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSV   82 (432)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHH
Confidence            3446677888888899999999888776663 24334455555566677788899999999999998876664432221 


Q ss_pred             ---HHHHHH-hh--c-----h--HHHHHHHHHHHHhhccchhhhH-HHHhhhh----c--CCcchhhHHHHHHhhhhhHH
Q 011781          193 ---TALLPL-LA--G-----F--MPGLVLSRVLVGIGEGVSPSAA-TDLIARS----I--PLEERSRAVSFVFGGLSFGS  252 (477)
Q Consensus       193 ---~~~~~~-~~--~-----~--~~~~~~~~~l~g~~~~~~~~~~-~~~i~~~----~--~~~~r~~~~~~~~~~~~~g~  252 (477)
                         +.++.. +.  .     .  ...+++...+.|.-.-....+. .+.=-||    .  +++.+.+.++...-.-.+.-
T Consensus        83 ~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ck  162 (432)
T PF06963_consen   83 AASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCK  162 (432)
T ss_pred             HHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHH
Confidence               111111 11  1     1  1112222222222211111111 1111122    2  45667788888888888999


Q ss_pred             HHHHhhhHHhhcccChhHHHHHHHHHHHHHHHHHHHhc----cCCc----CCCCCCCCcchhhh---hhhhhhhhHHhhc
Q 011781          253 VAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQ----EGET----SNGATLAPRSNYIN---MKKSLSASLEEMG  321 (477)
Q Consensus       253 ~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~  321 (477)
                      +++|++.|.+.+..+.+...++.++..++...+=+++.    +..+    ++..+..+..+...   ..+......+..+
T Consensus       163 llaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (432)
T PF06963_consen  163 LLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESSSDPSILKRLW  242 (432)
T ss_pred             HHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccccccccccccchhhHHHHHH
Confidence            99999999999988999888888877777655433321    1111    11100000000000   0000000000100


Q ss_pred             c--CCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHH
Q 011781          322 E--SLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL  399 (477)
Q Consensus       322 ~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~  399 (477)
                      +  ......|+..+++|.+...+...+++. ...++......|+..+ |+++...|..-+...+.++.+.++.+++.+|+
T Consensus       243 ~~~~~~~~~w~~Y~~q~vflas~alalLY~-TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri  320 (432)
T PF06963_consen  243 NPLRTIIRGWRTYFRQPVFLASFALALLYF-TVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI  320 (432)
T ss_pred             HHHHHHhccHHHHHhCHHHHHHHHHHHHHH-HHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1  111345777788886665544444443 3555677888999875 99999999999999999999999999999999


Q ss_pred             HhcCcccceehhhhhHHh--hhhhHHHHhhhcccCCCc-hHHHHHHHHHHH-----HhhhhhhhhhhHhhhccCccchhh
Q 011781          400 IATGVETTMVRKICQTIA--FLSPAVCMTLSSIDLGLP-HWEIVGILTAGL-----ALSSFALSGLYCTHQDISPEYASI  471 (477)
Q Consensus       400 g~~~~~~~~~r~~~~~~~--~~~~~~~~~l~~~~~~~~-~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~p~~~g~  471 (477)
                      |..       |.-...+.  ..+...+....... ..+ .......++.|.     +..++-......+++.+++++||+
T Consensus       321 Glv-------r~G~~~l~~q~~~L~~~v~~~~~~-~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~  392 (432)
T PF06963_consen  321 GLV-------RAGLWSLWWQWVCLALCVVSFWAP-GSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGA  392 (432)
T ss_pred             cch-------hhHHHHHHHHHHHHHHHHHHHhcC-CCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhH
Confidence            865       22111111  11112222222222 211 122222333333     333444444445555677888999


Q ss_pred             hhhh
Q 011781          472 LLYL  475 (477)
Q Consensus       472 ~~gl  475 (477)
                      +.|+
T Consensus       393 v~gv  396 (432)
T PF06963_consen  393 VSGV  396 (432)
T ss_pred             HHHH
Confidence            9885

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.32  E-value=3.3e-11  Score=112.26  Aligned_cols=176  Identities=22%  Similarity=0.200  Sum_probs=140.4

Q ss_pred             HHHHHHHHHHHHhhhhHHHHhHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHH
Q 011781          116 IGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA  194 (477)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  194 (477)
                      ...+++.++..+.+...++..+|. +.+++|.++.+.|.....+.+...+..+.+|+++||+|.+|++......++++..
T Consensus       220 ~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~  299 (417)
T COG2223         220 TWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAA  299 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHH
Confidence            345566666777777777777777 6788999999999999999999999999999999999999999988888888777


Q ss_pred             HHHHhh------chHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccC-
Q 011781          195 LLPLLA------GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-  267 (477)
Q Consensus       195 ~~~~~~------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g-  267 (477)
                      +.....      .+....++..+..+++.+.-......++..+++ ++-|.+.|+.....++|+..-|...+...+..| 
T Consensus       300 ~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~  378 (417)
T COG2223         300 LLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGS  378 (417)
T ss_pred             HHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhccc
Confidence            765443      333444444455555555555666788888887 588999999999999999999999999998887 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhccC
Q 011781          268 WESVFYIFGLLGIAWFSGFKILQEG  292 (477)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~  292 (477)
                      +...|++...+.+++.+.......+
T Consensus       379 ~~~~f~~~~~~~~~a~v~~~~~y~r  403 (417)
T COG2223         379 YTGAFMLLLAFYLVALVLTWALYAR  403 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999988888877766555443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.32  E-value=1.8e-11  Score=122.40  Aligned_cols=158  Identities=17%  Similarity=0.134  Sum_probs=108.6

Q ss_pred             HHHhHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChh-------HHHHHHHHHHHHHHHHHHhhchHH
Q 011781          133 LSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK-------VLQTGVLIWSLATALLPLLAGFMP  204 (477)
Q Consensus       133 ~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-------~~~~~~~~~~~~~~~~~~~~~~~~  204 (477)
                      +....|. +.+++|++..+.+.+.++..++..++.+++|+++||++||+       ...+..++.++..+++. ..++.+
T Consensus       271 ~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~-~~~~~~  349 (476)
T PLN00028        271 MDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLG-RANSLG  349 (476)
T ss_pred             HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhc-ccchHH
Confidence            3344554 45678999999999999999999999999999999998652       22233333333333332 334444


Q ss_pred             HHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHH
Q 011781          205 GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFS  284 (477)
Q Consensus       205 ~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~  284 (477)
                      ..++..++.+++.+...+...+++.+..| +++|.+.|+.+.+..+|++++|.+.+ ..+..+|+..|++.+++.++..+
T Consensus       350 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~  427 (476)
T PLN00028        350 AAIVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTL  427 (476)
T ss_pred             HHHHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHH
Confidence            45555566666655555556666666554 78999999998888888888877654 22344699999999988888777


Q ss_pred             HHHHhccCC
Q 011781          285 GFKILQEGE  293 (477)
Q Consensus       285 ~~~~~~~~~  293 (477)
                      +.++.+.+.
T Consensus       428 ~~~~~~~~~  436 (476)
T PLN00028        428 PVAFIHFPQ  436 (476)
T ss_pred             HHHheeccc
Confidence            777665443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.32  E-value=6e-11  Score=116.56  Aligned_cols=154  Identities=14%  Similarity=-0.009  Sum_probs=117.0

Q ss_pred             HHHHhHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHh----hchHHHH
Q 011781          132 NLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL----AGFMPGL  206 (477)
Q Consensus       132 ~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----~~~~~~~  206 (477)
                      .+....|. +.+++|.++.+.++......++..++.++.|++.||+++|+.+.++.++..++.++....    .++.+.+
T Consensus       233 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  312 (406)
T PRK15402        233 AWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWL  312 (406)
T ss_pred             HHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHH
Confidence            33344555 456789999999998888888899999999999999999999988877766666555332    2344556


Q ss_pred             HHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHHH
Q 011781          207 VLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGF  286 (477)
Q Consensus       207 ~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  286 (477)
                      ++..++.|++.+...+......... +++++|++.+..+....+|..+|+.+++.+.+..++....+..++..++..+..
T Consensus       313 ~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  391 (406)
T PRK15402        313 TAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLV  391 (406)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHH
Confidence            7788889998887777666655444 448999999999999999999999999999888887766555555554443333

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.31  E-value=4e-11  Score=118.96  Aligned_cols=162  Identities=13%  Similarity=0.026  Sum_probs=108.0

Q ss_pred             hhhhHHHHhHHhhhh-hhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHH---HHHHHHHHh-hch
Q 011781          128 MDKVNLSVAIIPMSH-RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS---LATALLPLL-AGF  202 (477)
Q Consensus       128 ~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~---~~~~~~~~~-~~~  202 (477)
                      ........+.|.+.+ ..|.++.+.++...+..++.+++.++.|+++||+++++....+..+..   ++.+.+... ..+
T Consensus       265 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (438)
T TIGR00712       265 LLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGN  344 (438)
T ss_pred             HHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            333444556666554 479999999999999999999999999999999965432222322211   111111111 122


Q ss_pred             HHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhH-HHHHHhhhHHhhcccChhHHHHHHHHHHHH
Q 011781          203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFG-SVAGLLLAPPIIENLGWESVFYIFGLLGIA  281 (477)
Q Consensus       203 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g-~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~  281 (477)
                      .+...+..++.|++.............+.+|+++|++++|+.+....+| .+++|.+.|.+.++.||.+.|++..++.++
T Consensus       345 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~  424 (438)
T TIGR00712       345 PLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSIL  424 (438)
T ss_pred             hHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHH
Confidence            2333344455555433333333456778899999999999999888876 578999999999999999999887776666


Q ss_pred             HHHHHHHh
Q 011781          282 WFSGFKIL  289 (477)
Q Consensus       282 ~~~~~~~~  289 (477)
                      ..+..+++
T Consensus       425 ~~~~~~~~  432 (438)
T TIGR00712       425 AVILLIVV  432 (438)
T ss_pred             HHHHHHHH
Confidence            55444433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00898 2A0119 cation transport protein

Probab=99.31  E-value=1.5e-11  Score=124.54  Aligned_cols=152  Identities=17%  Similarity=-0.026  Sum_probs=115.2

Q ss_pred             HhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhch-HHHHHHHHHHHHhh
Q 011781          138 IPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLSRVLVGIG  216 (477)
Q Consensus       138 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~~  216 (477)
                      +.....++.+.   .+...+..+..+++.++.+++.||+|||+.+.++.++.+++.+++....+. .+..++..++.+++
T Consensus       347 ~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  423 (505)
T TIGR00898       347 VLDLGNLGGNI---YLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFG  423 (505)
T ss_pred             hccccccCCCh---HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence            33444455443   233445566777888999999999999999999988877777666443332 23445556667777


Q ss_pred             ccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHHHHHhccCCc
Q 011781          217 EGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGET  294 (477)
Q Consensus       217 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (477)
                      .+..++....+..|.+|++.|+.++|+.+....+|.+++|.+.+ + ...++..++++.+++.++..+..++++|++.
T Consensus       424 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~lpet~~  499 (505)
T TIGR00898       424 ITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLFLPETKG  499 (505)
T ss_pred             HHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHcCcCCCC
Confidence            77778888999999999999999999999999999999999998 3 4456778888888888887777777776543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.30  E-value=1.4e-10  Score=114.83  Aligned_cols=162  Identities=15%  Similarity=0.078  Sum_probs=104.3

Q ss_pred             HhhhhHHHHhHHhh-hhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHH-h--hch
Q 011781          127 NMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL-L--AGF  202 (477)
Q Consensus       127 ~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-~--~~~  202 (477)
                      ......+..++|.+ .+++|.+..+.+...++..+...+++++.|+++||+|||+.+.++.++.++....... .  .++
T Consensus       256 ~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (432)
T PRK10406        256 SLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSS  335 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            33444455566664 4668999989999999888888899999999999999999887765543333221111 1  122


Q ss_pred             HHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhh-HHHHHHhhhHHhhcccC-hhHHHHHHHHHHH
Q 011781          203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF-GSVAGLLLAPPIIENLG-WESVFYIFGLLGI  280 (477)
Q Consensus       203 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~ig~~~~~~l~~~~g-~~~~~~~~~~~~~  280 (477)
                      ....+....+.+++.+...+....+++|++|++.|+.++|+.+...++ ++...|.+.+.+ +..| |...+++.++..+
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~  414 (432)
T PRK10406        336 PYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAV  414 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHH
Confidence            222222222222333334455677889999999999999998876554 344578877755 4445 5556666666666


Q ss_pred             HHHHHHHHh
Q 011781          281 AWFSGFKIL  289 (477)
Q Consensus       281 ~~~~~~~~~  289 (477)
                      +.++..+++
T Consensus       415 i~~~~~~~l  423 (432)
T PRK10406        415 VAFLVSLML  423 (432)
T ss_pred             HHHHHHHHh
Confidence            655555544

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.28  E-value=8.6e-11  Score=116.67  Aligned_cols=176  Identities=21%  Similarity=0.213  Sum_probs=152.8

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhc--ChhHHHHHHHHHHH
Q 011781          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFG--GRKVLQTGVLIWSL  191 (477)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g--~r~~~~~~~~~~~~  191 (477)
                      +.++.+.+...+..++..+...++|.+.++.|.+..+.+.+.++..+..+++.++.|+++|+..  ++.+..++.++.++
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl  377 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL  377 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH
Confidence            4555666677777788888888899999999999999999999999999999999999999987  44555666666666


Q ss_pred             HHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccC-hhH
Q 011781          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WES  270 (477)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g-~~~  270 (477)
                      +.+.++ ..++++.++....+.|++.|.........+.|+.+.++...+.|+...+.+++.++||+++|.+.+..| |..
T Consensus       378 ~~~~~p-~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~  456 (509)
T KOG2504|consen  378 ARLFLP-FATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDH  456 (509)
T ss_pred             HHHHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeee
Confidence            665554 667778999999999999999988888899999999999999999999999999999999999999887 999


Q ss_pred             HHHHHHHHHHHHHHHHHHhc
Q 011781          271 VFYIFGLLGIAWFSGFKILQ  290 (477)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~  290 (477)
                      .|+..++..++....++..+
T Consensus       457 ~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  457 AFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             ehhhcChHHHHHHHHHHHhH
Confidence            99999999888887777666

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.27  E-value=4.1e-11  Score=111.64  Aligned_cols=176  Identities=18%  Similarity=0.129  Sum_probs=139.1

Q ss_pred             HHHHHHHHHHHHhhh-hHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHH
Q 011781          116 IGTTSLAFVICNMDK-VNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA  194 (477)
Q Consensus       116 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  194 (477)
                      +....+..++..-+. ..+......-..++|++..++.++.....+..++|++++|++.||+|.|+++.++.+++.+.++
T Consensus       254 i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~  333 (438)
T COG2270         254 LVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAAL  333 (438)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHH
Confidence            334444444443333 3333334444559999999999999999999999999999999999999999999888877776


Q ss_pred             HHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccC-hhHHHH
Q 011781          195 LLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVFY  273 (477)
Q Consensus       195 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g-~~~~~~  273 (477)
                      ... +...-..+.++..+.|++.|..+...-++..+.+|+++-++.+|+++.....+..+||.+.+.+.+..| -|..+.
T Consensus       334 ~~~-~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~  412 (438)
T COG2270         334 YLI-FLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVL  412 (438)
T ss_pred             HHH-HccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHH
Confidence            553 444345677888999999999999999999999999999999999999999999999999999988765 677777


Q ss_pred             HHHHHHHHHHHHHHHhccC
Q 011781          274 IFGLLGIAWFSGFKILQEG  292 (477)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~  292 (477)
                      ...++.++.+++....+.+
T Consensus       413 ~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         413 SIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HHHHHHHhhHhhEEeecCC
Confidence            6666666666665555544

>PRK10054 putative transporter; Provisional

Probab=99.27  E-value=1.1e-10  Score=114.05  Aligned_cols=144  Identities=16%  Similarity=0.057  Sum_probs=116.5

Q ss_pred             hhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhccchh
Q 011781          142 HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSP  221 (477)
Q Consensus       142 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~  221 (477)
                      ++.+.+....+++.+.+.+.....+++.|++.||+++|+.+..+..+.+++...+....++.+.+++..++.|++.+...
T Consensus       237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  316 (395)
T PRK10054        237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYA  316 (395)
T ss_pred             cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence            45566777788888888888888888999999999999999888877777766554333566667778899999988888


Q ss_pred             hhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHHH
Q 011781          222 SAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGF  286 (477)
Q Consensus       222 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  286 (477)
                      |.....+.+..|++.++++++..+ ...+|..+||.++|.+.++.|....|++.++...+..+..
T Consensus       317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~  380 (395)
T PRK10054        317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLM  380 (395)
T ss_pred             hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHH
Confidence            888899999999999999998765 5668999999999999999999888888665555444333

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.26  E-value=1.1e-10  Score=111.19  Aligned_cols=160  Identities=14%  Similarity=0.109  Sum_probs=131.8

Q ss_pred             HHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 011781          133 LSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVL  212 (477)
Q Consensus       133 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  212 (477)
                      +..+...+.++-+.++..+|.+.++..+.-++.-.+..++.+|+|.|+.++++.+++++=..+++ ++++.+.+.+.+.+
T Consensus       243 f~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~-~~~~~~~i~~~klL  321 (412)
T PF01306_consen  243 FPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSG-FATNPWVISLIKLL  321 (412)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-T--SHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHh-hhcchHHHHHHHHH
Confidence            33344444444455667899999999999999999999999999999999999999888887775 66777889999999


Q ss_pred             HHhhccchhhhHHHHhhhhcCCcchhhHHHHH-HhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHHHHHhcc
Q 011781          213 VGIGEGVSPSAATDLIARSIPLEERSRAVSFV-FGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQE  291 (477)
Q Consensus       213 ~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  291 (477)
                      .|+-.+....+...++.+.+|++..++...+. +...++|.++.+.++|.+.|+.|.+.+|++.+.+.++..++..+..+
T Consensus       322 H~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~  401 (412)
T PF01306_consen  322 HALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK  401 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence            99999999999999999999988888888884 78889999999999999999999999999999888777666665544


Q ss_pred             CC
Q 011781          292 GE  293 (477)
Q Consensus       292 ~~  293 (477)
                      ++
T Consensus       402 ~~  403 (412)
T PF01306_consen  402 KD  403 (412)
T ss_dssp             -S
T ss_pred             CC
Confidence            43

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.25  E-value=1.9e-10  Score=100.76  Aligned_cols=151  Identities=19%  Similarity=0.176  Sum_probs=117.0

Q ss_pred             HhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhc
Q 011781          138 IPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGE  217 (477)
Q Consensus       138 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  217 (477)
                      ..+++.+|+|+...+.+.+.......+.+++.|.++||+|++.+++.+..+..+..-...+++  .+.-++...+.|+..
T Consensus       289 ~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsy  366 (459)
T KOG4686|consen  289 MFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLSY  366 (459)
T ss_pred             HHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhhH
Confidence            347889999999999999988888899999999999999999988877665554432221222  233457788899998


Q ss_pred             cchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccC---h-hHHHHHHHHHHHHHHHHHHHhc
Q 011781          218 GVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG---W-ESVFYIFGLLGIAWFSGFKILQ  290 (477)
Q Consensus       218 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g---~-~~~~~~~~~~~~~~~~~~~~~~  290 (477)
                      +......+..++...|+++.|++.|..+...++|-++.|+++|++.++-|   | +..|++.+.+++....+.+.+.
T Consensus       367 sllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~N  443 (459)
T KOG4686|consen  367 SLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYLN  443 (459)
T ss_pred             HHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhee
Confidence            88877788899999999999999999999999999999999999998755   3 3344445555555544444443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.25  E-value=1.5e-10  Score=115.94  Aligned_cols=175  Identities=16%  Similarity=0.053  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHhhhhHHHHhHHhh-hhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHH--------HHHH
Q 011781          116 IGTTSLAFVICNMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVL--------QTGV  186 (477)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~--------~~~~  186 (477)
                      +..+.+..+........+..++|.+ .+.+|.+..+.|+..++..++..++.++.|+++||+++|+..        ..+.
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  342 (465)
T TIGR00894       263 VWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGI  342 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            3444555556666666666677765 566899999999999999999999999999999998654221        1111


Q ss_pred             HHHHHH--HHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhc
Q 011781          187 LIWSLA--TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE  264 (477)
Q Consensus       187 ~~~~~~--~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~  264 (477)
                      .+...+  .+.......+....+++..+.+.+.+...+.......+..| +.+|.++++.+....+|++++|.+.|.+.+
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~  421 (465)
T TIGR00894       343 GGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILS  421 (465)
T ss_pred             HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeC
Confidence            111111  11111112233334444555555555555555556667666 589999999999999999999999998876


Q ss_pred             cc---ChhHHHHHHHHHHHHHHHHHHHhcc
Q 011781          265 NL---GWESVFYIFGLLGIAWFSGFKILQE  291 (477)
Q Consensus       265 ~~---g~~~~~~~~~~~~~~~~~~~~~~~~  291 (477)
                      ..   +|+..|++.+++.++..++...+.+
T Consensus       422 ~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~  451 (465)
T TIGR00894       422 QDSKNVWLIVFLIMAFVNILCVIFYLIFGS  451 (465)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHeeeeec
Confidence            53   3888999888877777666555443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.20  E-value=3.2e-10  Score=111.42  Aligned_cols=161  Identities=14%  Similarity=0.095  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHhhhhHHHHhHHhhhhhh--CCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhH-HHHHHHHHHHHHH
Q 011781          118 TTSLAFVICNMDKVNLSVAIIPMSHRF--GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKV-LQTGVLIWSLATA  194 (477)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~  194 (477)
                      ...+..++.......+..++|.+.+++  |.+..+.+...+...++..++.++.|+++||+++|+. .....++.+++.+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~  325 (412)
T TIGR02332       246 LYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWL  325 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHH
Confidence            334444455555666777888877764  6678888999999999999999999999999997775 3333333333332


Q ss_pred             HHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccC-hhHHHH
Q 011781          195 LLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVFY  273 (477)
Q Consensus       195 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g-~~~~~~  273 (477)
                      +. ....+....+++.++.+++.....+.......+.+|+++|++++|+.+....+|.+++|.+.|.+.+..| |++.++
T Consensus       326 ~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~  404 (412)
T TIGR02332       326 LA-SATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLW  404 (412)
T ss_pred             HH-HhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHH
Confidence            22 2222212222222333333333334444555677888999999999999999999999999999999875 999998


Q ss_pred             HHHHHH
Q 011781          274 IFGLLG  279 (477)
Q Consensus       274 ~~~~~~  279 (477)
                      +.+++.
T Consensus       405 ~~~~~~  410 (412)
T TIGR02332       405 FVAALL  410 (412)
T ss_pred             HHHHHH
Confidence            776644

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10133 L-fucose transporter; Provisional

Probab=99.20  E-value=6.7e-10  Score=109.84  Aligned_cols=141  Identities=16%  Similarity=0.096  Sum_probs=111.6

Q ss_pred             hhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhccch
Q 011781          141 SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVS  220 (477)
Q Consensus       141 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  220 (477)
                      .+.+|.++.+.++....+.++..++.++.|++.||+|+|+++..+.++..++.++.. ..++. ..++..++.|++.+..
T Consensus       287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~-~~~~~-~~~~~~~l~glg~~~i  364 (438)
T PRK10133        287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISA-FAGGH-VGLIALTLCSAFMSIQ  364 (438)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HcCCh-HHHHHHHHHHHHHHHH
Confidence            356899999999999999999999999999999999999998888766655554443 33332 2345677899999999


Q ss_pred             hhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccC-hhHHHHHHHHHHHHHHHH
Q 011781          221 PSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVFYIFGLLGIAWFSG  285 (477)
Q Consensus       221 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~  285 (477)
                      +|...+...+..+ ++.+.+.++... ..+|..++|.+.|.+.+..| .+..|++..+..+.....
T Consensus       365 ~P~~~s~a~~~~~-~~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~  428 (438)
T PRK10133        365 YPTIFSLGIKNLG-QDTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_pred             HHHHHHHHHcccc-hhhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            9999999999887 456778887764 45788899999999999887 788888765555444433

>TIGR00896 CynX cyanate transporter

Probab=99.19  E-value=8.4e-10  Score=106.36  Aligned_cols=141  Identities=14%  Similarity=0.023  Sum_probs=108.7

Q ss_pred             HHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhh-cChhHHHHHHHHHHHHHHHHHHhhchH
Q 011781          125 ICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-GGRKVLQTGVLIWSLATALLPLLAGFM  203 (477)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~  203 (477)
                      +..........+.|.+.++.|.+..+.+.+.++..++.+++.++.|++.||+ +||+.+..+.++.+++.+++....++ 
T Consensus       208 ~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  286 (355)
T TIGR00896       208 LQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMH-  286 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhh-
Confidence            3334444455667877778899999999999999999999999999999999 56666667766666666555433322 


Q ss_pred             HHHHHHHHHHHhhccchhhhHHHHhhhhcC-CcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccC
Q 011781          204 PGLVLSRVLVGIGEGVSPSAATDLIARSIP-LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG  267 (477)
Q Consensus       204 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g  267 (477)
                      ... ...++.|++.+...+...+.+.+..+ +++++...++.+....++..++|.+.|++.++.|
T Consensus       287 ~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       287 GLW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            222 24578899999988888787776554 4667899999999999999999999999998876

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.19  E-value=4.5e-10  Score=109.93  Aligned_cols=152  Identities=17%  Similarity=0.136  Sum_probs=114.8

Q ss_pred             HHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhh-hcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 011781          134 SVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVL  212 (477)
Q Consensus       134 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  212 (477)
                      ....|.+.++.+.++.+.+++.++..++...+..+.+++.|| ++.++.+..+.++.+++.+++. ..++.+.+++..++
T Consensus       228 ~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~l  306 (400)
T PRK11646        228 MLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIG-MVSNLQQLFTLICL  306 (400)
T ss_pred             HHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHH
Confidence            345677666666678888999888887777666666776654 6666667777777777766554 45555666677788


Q ss_pred             HHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhccc---C-hhHHHHHHHHHHHHHHHHH
Q 011781          213 VGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL---G-WESVFYIFGLLGIAWFSGF  286 (477)
Q Consensus       213 ~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~---g-~~~~~~~~~~~~~~~~~~~  286 (477)
                      .+++.+...|...+++.+..|+++||+++|+.+....+|..+||.++|++.++.   + ....+++.+++.++..+..
T Consensus       307 ~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (400)
T PRK11646        307 FYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLAL  384 (400)
T ss_pred             HHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHH
Confidence            888888888899999999999999999999999999999999999999999874   3 3455555555555554443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.17  E-value=1.2e-08  Score=91.09  Aligned_cols=165  Identities=16%  Similarity=0.152  Sum_probs=124.2

Q ss_pred             HHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhh----
Q 011781          125 ICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA----  200 (477)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----  200 (477)
                      ........++.+-|.+.+.+|+|.+|...+.+...+|..+ .++.|.+.|++|++.++.+|.+...++........    
T Consensus        13 ~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i   91 (250)
T PF06813_consen   13 LCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI   91 (250)
T ss_pred             HhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            3334667788889999999999999999999999999876 58899999999999999999988888877664321    


Q ss_pred             --chHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHH
Q 011781          201 --GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLL  278 (477)
Q Consensus       201 --~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~  278 (477)
                        ..+|.+.+..++.|.+.+....+......+.+| ++||.+.|+.-...++++.+-..+...+.+. +-...+.+.++.
T Consensus        92 ~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~-~~~~fll~la~~  169 (250)
T PF06813_consen   92 PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD-DPSSFLLFLAVL  169 (250)
T ss_pred             CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC-ChHHHHHHHHHH
Confidence              245677777777877766666777777778897 6899999999999999998887777766655 333333444443


Q ss_pred             H-HHHHHHHHHhccC
Q 011781          279 G-IAWFSGFKILQEG  292 (477)
Q Consensus       279 ~-~~~~~~~~~~~~~  292 (477)
                      . ++.++...+++..
T Consensus       170 ~~~v~l~~~~~vr~~  184 (250)
T PF06813_consen  170 PAVVCLVAMFFVRPV  184 (250)
T ss_pred             HHHHHHHHhhheecc
Confidence            3 3344444444433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.17  E-value=7.9e-10  Score=107.82  Aligned_cols=173  Identities=14%  Similarity=0.076  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHH
Q 011781          118 TTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP  197 (477)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  197 (477)
                      .+++.++..+.....++.++|.+.++ ..+.........+..+...+..+++|+++||+|+++++.++.++..++.....
T Consensus       256 llslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~  334 (462)
T PRK15034        256 LLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLF  334 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence            33444455555555566666665444 22333333334455677888999999999999999999988876666553321


Q ss_pred             -Hhh----chHHHHHHHHHHHHhhccchhhhHHHHhhhhcCC---------------------cchhhHHHHHHhhhhhH
Q 011781          198 -LLA----GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPL---------------------EERSRAVSFVFGGLSFG  251 (477)
Q Consensus       198 -~~~----~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~---------------------~~r~~~~~~~~~~~~~g  251 (477)
                       ...    .+++.+.+..+...++.|........++.+.+|+                     ++-|.+.|+......+|
T Consensus       335 l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~G  414 (462)
T PRK15034        335 LTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVG  414 (462)
T ss_pred             HHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcc
Confidence             222    2345555555555566666667777888888874                     15678899999999999


Q ss_pred             HHHHHhhhHHhhcccC-hhHHHHHHHHHHHHHHHHHHHhcc
Q 011781          252 SVAGLLLAPPIIENLG-WESVFYIFGLLGIAWFSGFKILQE  291 (477)
Q Consensus       252 ~~ig~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  291 (477)
                      +.+-|.+.|...+..| +...|+...+..+++.++.+....
T Consensus       415 gf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~  455 (462)
T PRK15034        415 GFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYG  455 (462)
T ss_pred             cchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999988888777654 888888888887777666555443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.16  E-value=2.5e-08  Score=101.99  Aligned_cols=156  Identities=19%  Similarity=0.226  Sum_probs=124.5

Q ss_pred             HHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhh-hcChhHHHHHHHHHHHHHHHHHHhhc-------hHHH
Q 011781          134 SVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIWSLATALLPLLAG-------FMPG  205 (477)
Q Consensus       134 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~-------~~~~  205 (477)
                      ..+..++.+.+|.+...+..+...+....-+.++++|.++|+ +|+++.+.++.++..++..++...+.       ....
T Consensus         8 aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~   87 (654)
T TIGR00926         8 TILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL   87 (654)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence            344455566789999998888888888888999999999996 69999999999988888877643211       1123


Q ss_pred             HHHHHHHHHhhccchhhhHHHHhhhhcCCc---chhhHHHHHHhhhhhHHHHHHhhhHHhhccc-------ChhHHHHHH
Q 011781          206 LVLSRVLVGIGEGVSPSAATDLIARSIPLE---ERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-------GWESVFYIF  275 (477)
Q Consensus       206 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~-------g~~~~~~~~  275 (477)
                      .+++..+..+|.+++-|...+...|.++++   ++...+.++..+.++|+.+++.+.+++.+..       +|...|.+.
T Consensus        88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~  167 (654)
T TIGR00926        88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVP  167 (654)
T ss_pred             HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHH
Confidence            567778888999999999999999999754   3677888899999999999999999887443       699999999


Q ss_pred             HHHHHHHHHHHHHh
Q 011781          276 GLLGIAWFSGFKIL  289 (477)
Q Consensus       276 ~~~~~~~~~~~~~~  289 (477)
                      +++.++.+++....
T Consensus       168 ~i~m~ia~lvf~~g  181 (654)
T TIGR00926       168 AILMILALIVFMAG  181 (654)
T ss_pred             HHHHHHHHHHHHHh
Confidence            88888776665543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.16  E-value=7.6e-10  Score=107.83  Aligned_cols=142  Identities=18%  Similarity=0.221  Sum_probs=102.8

Q ss_pred             hHHHHhHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhh----chHHH
Q 011781          131 VNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA----GFMPG  205 (477)
Q Consensus       131 ~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~~  205 (477)
                      .......|. +.+++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+..++.+++....    +....
T Consensus       223 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (385)
T TIGR00710       223 FAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAM  302 (385)
T ss_pred             HHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence            334444555 4557899999999999999999999999999999999999998888777666655543221    23344


Q ss_pred             HHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHH
Q 011781          206 LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY  273 (477)
Q Consensus       206 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~  273 (477)
                      +++..++.|++.+...+.......+..| ++++++.++.+.....++.+++.+.+.+.+..+|...+.
T Consensus       303 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~  369 (385)
T TIGR00710       303 IIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHGNTAWPMSLS  369 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccccChHHHHHH
Confidence            5556778889888888888888888876 689999999888776544444444455544444443333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.14  E-value=1.3e-09  Score=107.72  Aligned_cols=153  Identities=20%  Similarity=0.152  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHH
Q 011781          116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATAL  195 (477)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  195 (477)
                      +..+++..++............+++.++.--++...+.+..+..++..++.+++++++||+|+|+.+..+.++.+++.++
T Consensus       227 ~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~  306 (428)
T PF13347_consen  227 FRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLL  306 (428)
T ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHH
Confidence            33455555566666666666666655553334467788888999999999999999999999999999999999888887


Q ss_pred             HHHhh-chHHHHHHHHHHHHhhccchhhhHHHHhhhhcCC-------cchhhHHHHHHhhhhhHHHHHHhhhHHhhcccC
Q 011781          196 LPLLA-GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPL-------EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG  267 (477)
Q Consensus       196 ~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g  267 (477)
                      ..+.. ++.+.+++..++.|++.+..++...++++|..+.       ++.|..+|..+....+|..+++.+.+.+.+..|
T Consensus       307 ~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  307 LFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG  386 (428)
T ss_pred             HHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence            76554 5778899999999999999999999999998863       345889999999999999999999998876654


Q ss_pred             h
Q 011781          268 W  268 (477)
Q Consensus       268 ~  268 (477)
                      +
T Consensus       387 y  387 (428)
T PF13347_consen  387 Y  387 (428)
T ss_pred             c
Confidence            3

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.13  E-value=2e-09  Score=105.21  Aligned_cols=138  Identities=16%  Similarity=0.127  Sum_probs=93.3

Q ss_pred             hHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 011781          136 AIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVG  214 (477)
Q Consensus       136 ~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  214 (477)
                      ..|. +.+++|.++.+.+.+.+...++.+++.++.+++.||+|+|+.+.++..+..++.+++. .....+..++...+.+
T Consensus       225 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~  303 (392)
T PRK10473        225 TSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLA-LSPSHAVSLFGITLIC  303 (392)
T ss_pred             hCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            3443 5567899999999999999999999999999999999999999988887777766654 3333333334444444


Q ss_pred             hhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHH
Q 011781          215 IGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLG  279 (477)
Q Consensus       215 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~  279 (477)
                      .+.+...+..  ...+..|.++|+   +.......++..+|+.+++++.+..|+.....+.+++.
T Consensus       304 ~g~~~~~~~~--~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~~~  363 (392)
T PRK10473        304 AGFSVGFGVA--MSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGILI  363 (392)
T ss_pred             HHHHHHhHHH--HHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            4433333332  233344544443   44455566788888888888888888776555555443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.12  E-value=3.4e-09  Score=103.53  Aligned_cols=148  Identities=15%  Similarity=0.077  Sum_probs=115.2

Q ss_pred             hhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhcc
Q 011781          139 PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEG  218 (477)
Q Consensus       139 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~  218 (477)
                      .+.+.+|.++.+.|++.+...++.++++++.+++.||.++++.+..+. +.++..+++. ..++++...+..++.|++.+
T Consensus       231 ~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~g  308 (393)
T PRK11195        231 WAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMA-LQHSLLPAYPLLILIGALGG  308 (393)
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHH-HHhHHHHHHHHHHHHHHhhh
Confidence            355668999999999999999999999999999999999998887774 3344443443 34555666777888999988


Q ss_pred             chhhhHHHHhhhhcCCcc-hhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHHHHHh
Q 011781          219 VSPSAATDLIARSIPLEE-RSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL  289 (477)
Q Consensus       219 ~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  289 (477)
                      ...+...+.+.+..|++. +|++.++.+...++|..++..+.+.+ +..|-+..+++.++..++.+.+.+..
T Consensus       309 ~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (393)
T PRK11195        309 FFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALLW  379 (393)
T ss_pred             hhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888766544 79999999999999999999999865 56787777777666555554444433

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.11  E-value=2.3e-09  Score=119.63  Aligned_cols=148  Identities=18%  Similarity=0.181  Sum_probs=119.8

Q ss_pred             HHHHhHHh-hhhhhCCCcc-hhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q 011781          132 NLSVAIIP-MSHRFGWNSS-VAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLS  209 (477)
Q Consensus       132 ~~~~~~~~-~~~~~g~s~~-~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (477)
                      .....+|. +.+.+|.+.. +.|++.+...++.+++.+++|++.||+++++.+.++.++.+++.+++. ...+.+.++++
T Consensus       250 ~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  328 (1146)
T PRK08633        250 LAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLP-TAPSLASVLVL  328 (1146)
T ss_pred             HHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHH-HhhhHHHHHHH
Confidence            33344444 5677899998 999999999999999999999999999999988888777777766664 44566777788


Q ss_pred             HHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhc-ccChhHHHHHHHHHHH
Q 011781          210 RVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-NLGWESVFYIFGLLGI  280 (477)
Q Consensus       210 ~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~-~~g~~~~~~~~~~~~~  280 (477)
                      .++.|++.+...+...+++.+..|++.||+++|+.+....+|.++++.+++.+.. .+++...+++.+.+.+
T Consensus       329 ~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  400 (1146)
T PRK08633        329 FFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTL  400 (1146)
T ss_pred             HHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            8999999999889999999999999999999999999999999888888877654 2355556666555443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.11  E-value=4.3e-09  Score=101.45  Aligned_cols=167  Identities=15%  Similarity=-0.029  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcC---hhHHHH-HHHHHHHH
Q 011781          117 GTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGG---RKVLQT-GVLIWSLA  192 (477)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~---r~~~~~-~~~~~~~~  192 (477)
                      ..+.+..++.......+..++|.+.++.|.+.. .+...++..+...++   .++++||..|   |+.... ..++.++.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~  270 (368)
T TIGR00903       195 WIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAF  270 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence            344444555555566667788887788887754 566666655555555   4677777654   333332 33333333


Q ss_pred             HHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHH
Q 011781          193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF  272 (477)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~  272 (477)
                      ..... ...+....+++..+.+++.....+...++.+|.+|++.|+++.|+.+....+|++++|.+.+.+..  |.+..|
T Consensus       271 ~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f  347 (368)
T TIGR00903       271 FLALA-FELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYF  347 (368)
T ss_pred             HHHHH-HccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHH
Confidence            33332 233334445566667777777778888999999999999999999999999999999999988774  777888


Q ss_pred             HHHHHHHHHHHHHHHHhc
Q 011781          273 YIFGLLGIAWFSGFKILQ  290 (477)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~  290 (477)
                      .+.++..++..+....++
T Consensus       348 ~~~~~~~~i~~~~~~~~~  365 (368)
T TIGR00903       348 TFLAILITIAFAIALLLP  365 (368)
T ss_pred             HHHHHHHHHHHHHHHhCC
Confidence            888877777666654333

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.09  E-value=3.1e-09  Score=103.30  Aligned_cols=131  Identities=17%  Similarity=0.060  Sum_probs=89.5

Q ss_pred             hhHHHHhHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHH---HhhchHHH
Q 011781          130 KVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP---LLAGFMPG  205 (477)
Q Consensus       130 ~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~---~~~~~~~~  205 (477)
                      ...+....|. +.+++|.++.+.|++.+...++..++.++.|++.||+|+|+.+..+..+..+..+...   ....+.+.
T Consensus       210 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (377)
T PRK11102        210 MFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWA  289 (377)
T ss_pred             HHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            3333334444 5566899999999999999999999999999999999999998887765433322221   11223344


Q ss_pred             HHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhh-hhhHHHHHHhhhHH
Q 011781          206 LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGG-LSFGSVAGLLLAPP  261 (477)
Q Consensus       206 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~ig~~~~~~  261 (477)
                      ..+...+.+.+.+...+.....+.+..| +++++++++.+.. ..+|..+++++++.
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~  345 (377)
T PRK11102        290 LVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA  345 (377)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4444444555555555566667777766 7899999987664 45777777776553

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=99.09  E-value=6.3e-07  Score=87.74  Aligned_cols=274  Identities=11%  Similarity=-0.002  Sum_probs=163.0

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCC-----CcchhhHHHHHHHHHHHHh-hhhhhhhhhhhcChhHHHHHHH
Q 011781          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGW-----NSSVAGLVQSSFFWGYALS-QLPGGWLAKIFGGRKVLQTGVL  187 (477)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----s~~~~g~~~~~~~~~~~~~-~~~~g~l~dr~g~r~~~~~~~~  187 (477)
                      +.+..+.+..|+..+.++..    -.+.+.+.+     +...+.++-+...+...+. .++.+++++|++|++++.....
T Consensus         7 ~k~~~~~l~fF~il~~Y~iL----R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~   82 (472)
T TIGR00769         7 KKFLPLFLMFFCILFNYTIL----RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVIS   82 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHH
Confidence            33444444555444444433    334555544     4467888888887777766 8899999999999999887666


Q ss_pred             HHHHHHHHHHHh----hch--------------------------HHHHHHHHHHHHhhccchhh-hHHHHhhhhcCCcc
Q 011781          188 IWSLATALLPLL----AGF--------------------------MPGLVLSRVLVGIGEGVSPS-AATDLIARSIPLEE  236 (477)
Q Consensus       188 ~~~~~~~~~~~~----~~~--------------------------~~~~~~~~~l~g~~~~~~~~-~~~~~i~~~~~~~~  236 (477)
                      .+.+..+++++.    .+.                          .|...+..+...+-.....+ ..++++.|.++.+|
T Consensus        83 ~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~q  162 (472)
T TIGR00769        83 PFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDE  162 (472)
T ss_pred             HHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            655555444333    010                          12222333334444444444 77889999999999


Q ss_pred             hhhHHHHHHhhhhhHHHHHHhhhHHhhcc-------c-Chh----HHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcc
Q 011781          237 RSRAVSFVFGGLSFGSVAGLLLAPPIIEN-------L-GWE----SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRS  304 (477)
Q Consensus       237 r~~~~~~~~~~~~~g~~ig~~~~~~l~~~-------~-g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (477)
                      -.|..++...+.++|.++++.+..++.+.       . .|.    ..+.+.+++.++...+..++.+....++ ...+.+
T Consensus       163 akRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~  241 (472)
T TIGR00769       163 AKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTDP-RSYNPA  241 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc-cccchh
Confidence            99999999999999999999998887631       1 232    2333444444444444444433221111 000000


Q ss_pred             hhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhh----hHHHHHH
Q 011781          305 NYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTE----AAWVSIL  380 (477)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~~  380 (477)
                      +.         ..++.++..-..+++.++++|.++.+++...+++.+...+..-.-..+.+.+- ++.+    .|.+...
T Consensus       242 ~~---------~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p-~~~~~~~f~g~~~~~  311 (472)
T TIGR00769       242 LK---------EKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYP-SPNEYSAFMGDFSTW  311 (472)
T ss_pred             hc---------cccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Confidence            00         00000000112346788999999998888888877766666555555555432 3322    3445555


Q ss_pred             HHHHHHHHHHhhhhchhHHHhc
Q 011781          381 PPLASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       381 ~~~~~~~~~~~~g~l~dr~g~~  402 (477)
                      .++..++..++.+++.+|+|-+
T Consensus       312 ~gi~tl~~~l~~~~l~~~~Gw~  333 (472)
T TIGR00769       312 TGVVSVTMMLLSGNVIRKYGWL  333 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHH
Confidence            5666666677778999998765

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.09  E-value=5.4e-10  Score=107.37  Aligned_cols=136  Identities=26%  Similarity=0.304  Sum_probs=109.5

Q ss_pred             HHHHHHHhhhhHHHHhHHhh-hhhhCCC-cchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHH
Q 011781          121 LAFVICNMDKVNLSVAIIPM-SHRFGWN-SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL  198 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~-~~~~g~s-~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  198 (477)
                      ...+.............|.+ .+++|.+ ..+.+...++..+...++.++.|++.||+++|+..........+..+.+..
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (352)
T PF07690_consen  213 IAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLL  292 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence            33334444555577777775 8889999 789999999999999999999999999999987777766665555544432


Q ss_pred             h--hchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHH
Q 011781          199 L--AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGL  256 (477)
Q Consensus       199 ~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~  256 (477)
                      .  .++....++..++.|++.+...+....++.+..|++++|++.|+.+...++|..+||
T Consensus       293 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  293 LPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             SHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            2  223456667888899999999999999999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK09848 glucuronide transporter; Provisional

Probab=99.09  E-value=9.3e-10  Score=109.55  Aligned_cols=151  Identities=14%  Similarity=0.092  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHhhhhHHHHhHHhh-hhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHH
Q 011781          118 TTSLAFVICNMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL  196 (477)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  196 (477)
                      ...+..++............|.+ .+.+|.+....++......++.+++.++++++.||+|+|+.+.++.++..++.+++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~  311 (448)
T PRK09848        232 MLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLF  311 (448)
T ss_pred             HHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            33333444444444455555554 44567666554554555567788899999999999999999999988877776665


Q ss_pred             HHhh-chHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCc-------chhhHHHHHHhhhhhHHHHHHhhhHHhhcccCh
Q 011781          197 PLLA-GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE-------ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW  268 (477)
Q Consensus       197 ~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~  268 (477)
                      .... .+++.+++..++.|+|.+...+...++.+|..|.+       ++|..+|+.+....+|..+|+.+.+.+.+..|+
T Consensus       312 ~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        312 FWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            4322 34566667788899999999999999999988654       358999999999999999999999988766554

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.08  E-value=2.5e-09  Score=118.98  Aligned_cols=162  Identities=12%  Similarity=0.028  Sum_probs=123.4

Q ss_pred             HHHHHHHHhhhhHHHHhHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHH
Q 011781          120 SLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL  198 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  198 (477)
                      .+..+...+....+....|. +.+.+|.+..+.|++.+.+.++.+++.++.|++.|+.++++.+..+.++.+++.+.+++
T Consensus       231 ~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~  310 (1140)
T PRK06814        231 ILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAF  310 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHh
Confidence            33333333344444445555 45568999999999999999999999999999999888777666665555554443322


Q ss_pred             h-------------------hchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhh
Q 011781          199 L-------------------AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA  259 (477)
Q Consensus       199 ~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~  259 (477)
                      .                   ..+.+.+++..++.|++.+...+...+++.+.+|++.||+++|+.++...+|..++++++
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~  390 (1140)
T PRK06814        311 ASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIIL  390 (1140)
T ss_pred             cccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHH
Confidence            1                   145567778889999999999999999999999999999999999999999999999999


Q ss_pred             HHhhc-ccChhHHHHHHHHHHHH
Q 011781          260 PPIIE-NLGWESVFYIFGLLGIA  281 (477)
Q Consensus       260 ~~l~~-~~g~~~~~~~~~~~~~~  281 (477)
                      +.+.+ ..++...+++.+++.++
T Consensus       391 g~l~~~~~~~~~~~~~~~~~~~~  413 (1140)
T PRK06814        391 ALLQALGFSIPWIILFIALANLI  413 (1140)
T ss_pred             HHHHHhccCHHHHHHHHHHHHHH
Confidence            98874 45677777665554443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.07  E-value=4.2e-10  Score=102.40  Aligned_cols=134  Identities=12%  Similarity=0.047  Sum_probs=100.5

Q ss_pred             HHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcc
Q 011781          157 SFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEE  236 (477)
Q Consensus       157 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~  236 (477)
                      +..+.-.-|.++.+++.||+|||+.+..+.+++++..++.. ...+-....+..+..-++.++.+.+.+.+..|.+|...
T Consensus       389 itslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~-~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTav  467 (528)
T KOG0253|consen  389 ITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLT-TCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAV  467 (528)
T ss_pred             HHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHH-HhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhh
Confidence            34455567889999999999999999999999888877663 33332333334444444555666777899999999999


Q ss_pred             hhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHHHHHhccCC
Q 011781          237 RSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGE  293 (477)
Q Consensus       237 r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (477)
                      |+.+.|..+.+..+|+++.|+++  +....+-..+..+.+.++++..+...++|-..
T Consensus       468 RatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEt  522 (528)
T KOG0253|consen  468 RATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIET  522 (528)
T ss_pred             hhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeecc
Confidence            99999999999999999999999  33334455566777777777777777776543

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.07  E-value=1.2e-08  Score=93.29  Aligned_cols=164  Identities=16%  Similarity=0.083  Sum_probs=131.1

Q ss_pred             HHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhh-cChhHHHHHHHHHHHHHHHHHHhhch
Q 011781          124 VICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-GGRKVLQTGVLIWSLATALLPLLAGF  202 (477)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~  202 (477)
                      -++....+....++|.+..|.|+|..+.|++.++..+.....++....+++|. ++|+..+...+++.++.+.+.+.+.+
T Consensus       218 GlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~  297 (395)
T COG2807         218 GLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQ  297 (395)
T ss_pred             HhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhh
Confidence            34556667777789999999999999999999999999999999999999965 56666666667777777666544443


Q ss_pred             HHHHHHHHHHHHhhccchhhhHHHHhhhhc-CCcchhhHHHHHHhhhhhHHHHHHhhhHHhhccc-ChhHHHHHHHHHHH
Q 011781          203 MPGLVLSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-GWESVFYIFGLLGI  280 (477)
Q Consensus       203 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~-g~~~~~~~~~~~~~  280 (477)
                      .+  +...++.|+|.+..++.....+.+.. ++++.++..|+.+...++=..+||.+.|++.|.. +|+..++..+.+.+
T Consensus       298 ~~--~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i  375 (395)
T COG2807         298 LP--ILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATL  375 (395)
T ss_pred             HH--HHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHH
Confidence            22  22359999999999999999999887 4566788888899999999999999999999876 49988888777776


Q ss_pred             HHHHHHHHh
Q 011781          281 AWFSGFKIL  289 (477)
Q Consensus       281 ~~~~~~~~~  289 (477)
                      +..+.-+..
T Consensus       376 ~m~i~Gl~a  384 (395)
T COG2807         376 LMLIFGLRA  384 (395)
T ss_pred             HHHHHHhhc
Confidence            666555544

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.07  E-value=9.8e-10  Score=110.02  Aligned_cols=153  Identities=13%  Similarity=0.014  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHH
Q 011781          116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATAL  195 (477)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  195 (477)
                      +..++...++............+++.+....+....+++.++..++.+++.++++++.||+|+|+.+.++..+..++.+.
T Consensus       233 ~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~  312 (473)
T PRK10429        233 LSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGV  312 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            33444444444455555555656655554445666777878777889999999999999999999998887765555444


Q ss_pred             HHH----hhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcC-------CcchhhHHHHHHhhhhhHHHHHHhhhHHhhc
Q 011781          196 LPL----LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIP-------LEERSRAVSFVFGGLSFGSVAGLLLAPPIIE  264 (477)
Q Consensus       196 ~~~----~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~  264 (477)
                      ...    ..++.+.+++..++.|++.+...+...++++|..+       .+..|..+|......-+|..+++.+.|++.+
T Consensus       313 ~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~  392 (473)
T PRK10429        313 LLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG  392 (473)
T ss_pred             HHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322    13445666777788999999999999999999965       3334668999999999999999999999887


Q ss_pred             ccCh
Q 011781          265 NLGW  268 (477)
Q Consensus       265 ~~g~  268 (477)
                      ..|+
T Consensus       393 ~~Gy  396 (473)
T PRK10429        393 LIGY  396 (473)
T ss_pred             HcCC
Confidence            6654

>TIGR00901 2A0125 AmpG-related permease

Probab=99.07  E-value=6.2e-10  Score=107.32  Aligned_cols=127  Identities=16%  Similarity=0.120  Sum_probs=100.6

Q ss_pred             HHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHH-HHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhh-
Q 011781          123 FVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFF-WGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA-  200 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-  200 (477)
                      .++............|.+.+++|.+..+++.+.++.. ++..++.+++|++.||+|+|+.+..+.++.+++..+..... 
T Consensus       218 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~  297 (356)
T TIGR00901       218 IVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLAS  297 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3334444455556666666669999999998888766 57789999999999999999998888877776665543332 


Q ss_pred             ---------chHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhh
Q 011781          201 ---------GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLS  249 (477)
Q Consensus       201 ---------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~  249 (477)
                               ++.+.+..+.++.+++.+...+...+++.+.+|+++||+.+|+.++..+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       298 NGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             cCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence                     3346677788899999999999999999999999999999999887654

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.07  E-value=2.3e-09  Score=107.99  Aligned_cols=144  Identities=16%  Similarity=0.129  Sum_probs=116.0

Q ss_pred             HHHHHHhhhhHHHHhHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhh
Q 011781          122 AFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA  200 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~  200 (477)
                      ..+...........+.|. ++..+|.++.+.|+......++..++.++.|++.||+|+|+.+..+.++.+++.+++....
T Consensus       267 ~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~  346 (495)
T PRK14995        267 MAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTD  346 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhc
Confidence            333333334444455565 4556899999999999999999999999999999999999998888877776665543322


Q ss_pred             --chHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcc
Q 011781          201 --GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN  265 (477)
Q Consensus       201 --~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~  265 (477)
                        .+.+...+..++.|++.+...+.....+.+..|+++++.+.++.+....+|..+|+.+.|.+.++
T Consensus       347 ~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        347 FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              34455667889999999999888899999999999999999999999999999999999988653

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.05  E-value=1.7e-09  Score=94.07  Aligned_cols=320  Identities=16%  Similarity=0.115  Sum_probs=177.2

Q ss_pred             HHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhch
Q 011781          123 FVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF  202 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~  202 (477)
                      +++...+...-+++.-.+.+.+|....++|.+........+++..+.|.++||-|||+.-+.-.+.+.++++.  -.++.
T Consensus        46 yslmmAgDWLQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiT--KhSpq  123 (454)
T KOG4332|consen   46 YSLMMAGDWLQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCIT--KHSPQ  123 (454)
T ss_pred             HHHHHhhhhhcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHh--hcCCc
Confidence            3344455666677777788889999999999988888888889999999999999999765444444333322  23555


Q ss_pred             HHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhH-------HHHH-HhhhhhHHHHHHhhhHHhhcccC--hhHHH
Q 011781          203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRA-------VSFV-FGGLSFGSVAGLLLAPPIIENLG--WESVF  272 (477)
Q Consensus       203 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~-------~~~~-~~~~~~g~~ig~~~~~~l~~~~g--~~~~~  272 (477)
                      +..++++|++.|+..+..+.+..++...-.. ++|+.-       ++-. ..+..+-++++.+.+..+.+.++  .-.+|
T Consensus       124 YkVLmVGR~LGGiaTsLLFSaFEsWliaEHn-ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPF  202 (454)
T KOG4332|consen  124 YKVLMVGRVLGGIATSLLFSAFESWLIAEHN-EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPF  202 (454)
T ss_pred             eEEEeehhhhhhHHHHHHHHHHHHHHHHHhh-hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCch
Confidence            6789999999999999888887776543322 233322       1211 13444556667777777777654  44555


Q ss_pred             HHHHHHHHHHHHHHH-HhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHH
Q 011781          273 YIFGLLGIAWFSGFK-ILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWG  351 (477)
Q Consensus       273 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  351 (477)
                      -..+.+..+...+.+ -..|+-.++.+    .+...   +..            +...+.+..++++.++.-...++-..
T Consensus       203 dAAacfLaigmAvil~~W~ENygdps~----~kdll---tqf------------~gaa~aiaSD~ki~LLG~iqsLFE~s  263 (454)
T KOG4332|consen  203 DAAACFLAIGMAVILSSWSENYGDPSE----NKDLL---TQF------------KGAARAIASDEKIALLGAIQSLFEGS  263 (454)
T ss_pred             HHHHHHHHHHHHHHHhhhhhccCChhh----hHHHH---HHh------------hHhHHHHhcchHHHHHHHHHHHHhhh
Confidence            554443333322221 11222111111    00000   000            00123455566666655555554444


Q ss_pred             HHHHhh-hhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcc
Q 011781          352 HYTCLS-WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSI  430 (477)
Q Consensus       352 ~~~~~~-~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~  430 (477)
                      .+.+.. |.|..--+..+   .--|.+++.+.++.++|.-+..++..|-..+      ...... +.++...+.+.+...
T Consensus       264 mytFVFLWTPaLspn~e~---iPhGfiFatFMlASmLGSSla~Rl~s~s~~~------ve~ymq-ivf~vs~a~l~Lpil  333 (454)
T KOG4332|consen  264 MYTFVFLWTPALSPNDEE---IPHGFIFATFMLASMLGSSLASRLLSRSSPK------VESYMQ-IVFLVSIAALLLPIL  333 (454)
T ss_pred             hheeeeeecccCCCCccc---CCchhHHHHHHHHHHHhhHHHHHHHhcCCcc------cchHHH-HHHHHHHHHHHHHHH
Confidence            444433 33432211122   2347888999999999988887776664333      122222 222222222222111


Q ss_pred             c------CCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhh
Q 011781          431 D------LGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLY  474 (477)
Q Consensus       431 ~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~g  474 (477)
                      .      ..++...++++.++-.+.+.+++.....-.+.+|.+.|++++-
T Consensus       334 t~~vsP~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimN  383 (454)
T KOG4332|consen  334 TSSVSPSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMN  383 (454)
T ss_pred             HhccCCCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhh
Confidence            1      1123334555656666656555555555555566666887763

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.05  E-value=2.4e-09  Score=107.85  Aligned_cols=143  Identities=16%  Similarity=0.189  Sum_probs=115.5

Q ss_pred             HHHHhhhhHHHHhHHhhh-hhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHH-h--
Q 011781          124 VICNMDKVNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL-L--  199 (477)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-~--  199 (477)
                      +...........+.|.+. +.+|.++.+.|+......++..++.++.|++.||+|||+.+.++..+.+++..++.. .  
T Consensus       265 ~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~  344 (485)
T TIGR00711       265 SLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTP  344 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCC
Confidence            333344444455666644 558999999999999999999999999999999999999999888887777766531 1  


Q ss_pred             hchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhccc
Q 011781          200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL  266 (477)
Q Consensus       200 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~  266 (477)
                      ..+.+.++...++.|++.+...+.......+..|+++++.+.|+.+....+|..+|+.+.+.+.++.
T Consensus       345 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~  411 (485)
T TIGR00711       345 DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNR  411 (485)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1234556677889999998888888888888899999999999999999999999999999888653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11043 putative transporter; Provisional

Probab=99.02  E-value=2.1e-08  Score=98.40  Aligned_cols=140  Identities=11%  Similarity=0.086  Sum_probs=104.6

Q ss_pred             HHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHH---HH-hhchHHHHH
Q 011781          132 NLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL---PL-LAGFMPGLV  207 (477)
Q Consensus       132 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~  207 (477)
                      .+....|.+.+++|.+..+.|+......++..++.++.+++.||+++|+.+.....+.+++.+.+   .. ..++.+.++
T Consensus       221 ~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (401)
T PRK11043        221 AWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLL  300 (401)
T ss_pred             HHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHH
Confidence            34445677777889999999998888888999999999999999999987655544444433222   11 123444555


Q ss_pred             HHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHH
Q 011781          208 LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF  272 (477)
Q Consensus       208 ~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~  272 (477)
                      +...+.|++.+...+...+...+..| ++++++.|+.+.....+...++.+.|.+.+.......+
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~  364 (401)
T PRK11043        301 IPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPLLTTGS  364 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChhHHHH
Confidence            66677888888888888888777776 68999999999998889999999999887754444433

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.02  E-value=6.5e-08  Score=93.36  Aligned_cols=301  Identities=15%  Similarity=0.086  Sum_probs=177.5

Q ss_pred             hhHH-HHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhh
Q 011781          151 AGLV-QSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIA  229 (477)
Q Consensus       151 ~g~~-~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~  229 (477)
                      .|+. .++....+.+++++.+.+.|+.|+|+.++++...+..-.+.+ +..+ -+.+++...+.|+|.+..+.....+++
T Consensus        51 aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gf-l~~N-~y~~yfssallG~Gaallw~GqG~ylt  128 (461)
T KOG3098|consen   51 AGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGF-LFPN-SYYLYFSSALLGFGAALLWTGQGGYLT  128 (461)
T ss_pred             ccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHH-Hhcc-hHHHHHHHHHhhhhHHheecccceehh
Confidence            3444 677888888999999999999999999999999887766655 3444 478899999999999999999999999


Q ss_pred             hhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhccc--------Chh-H----------HHHHHHHHHHHHHHHHH-Hh
Q 011781          230 RSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL--------GWE-S----------VFYIFGLLGIAWFSGFK-IL  289 (477)
Q Consensus       230 ~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~--------g~~-~----------~~~~~~~~~~~~~~~~~-~~  289 (477)
                      +..+++.+.+..++.......+.++|..+...+....        +.+ +          ...+.+++..+..+... ..
T Consensus       129 ~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~  208 (461)
T KOG3098|consen  129 SNSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFD  208 (461)
T ss_pred             hcCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhhee
Confidence            9999999999999999999999988877665443221        111 1          11111111111111110 11


Q ss_pred             ccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHh--h
Q 011781          290 QEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEE--L  367 (477)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~  367 (477)
                      ..+.+......+..+      ....+..+         ..-++++++++..+....+..++.........|..+.-.  .
T Consensus       209 ~~p~~~~~~~~~~~~------~~~~~~l~---------~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~  273 (461)
T KOG3098|consen  209 FLPSKDVVNCKSSSE------TSFSELLK---------LTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKL  273 (461)
T ss_pred             ecCccchhhhhhhcc------ccHHHHHH---------HHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhc
Confidence            111100000000000      00000000         123667788888887777776666666666666655422  2


Q ss_pred             CCc-hhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcccCC--C----------
Q 011781          368 SLN-LTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLG--L----------  434 (477)
Q Consensus       368 g~~-~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~--~----------  434 (477)
                      +.+ ....+......+++.+++....+.+.+|..+.+      |+..+.++..+......+.....+  .          
T Consensus       274 ~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg------~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~  347 (461)
T KOG3098|consen  274 GSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFG------RKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPL  347 (461)
T ss_pred             cCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc------cCcchhHHHHHHHHHHHHHhccccccCCCCCCccccc
Confidence            222 233445556667777777778888887776553      333333333333333332222111  1          


Q ss_pred             -----chHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          435 -----PHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       435 -----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                           .....+..++.|.+=. ........+.+.+.|+++..++++
T Consensus       348 ~~~~~~~~~~ii~~l~G~~D~-~~~t~~~~ii~~~~~~~~~~~fsi  392 (461)
T KOG3098|consen  348 LFTPSYYLALIIGFLLGFGDA-CFNTQRYVIIALLYPDDRAQAFSL  392 (461)
T ss_pred             ccccchhHHHHHHHHHhhHHH-HHHHHHHHHHHHHhcCchHHHHHH
Confidence                 1123334455555544 444455555566668887777654

>PRK09669 putative symporter YagG; Provisional

Probab=99.00  E-value=3e-09  Score=105.77  Aligned_cols=141  Identities=10%  Similarity=0.054  Sum_probs=101.5

Q ss_pred             hhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHh-hchHHHH
Q 011781          128 MDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL-AGFMPGL  206 (477)
Q Consensus       128 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~  206 (477)
                      ......+...+++.++.--++...+.+.....+..+++.+++++++||+|+|+.+..+.++..+..+..... .++.+.+
T Consensus       243 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (444)
T PRK09669        243 TAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLI  322 (444)
T ss_pred             HHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHH
Confidence            333333334444433332233444556666777888888999999999999999988876655433322222 3556667


Q ss_pred             HHHHHHHHhhccchhhhHHHHhhhhcCC-------cchhhHHHHHHhhhhhHHHHHHhhhHHhhcccCh
Q 011781          207 VLSRVLVGIGEGVSPSAATDLIARSIPL-------EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW  268 (477)
Q Consensus       207 ~~~~~l~g~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~  268 (477)
                      ++..++.|++.+...+...++++|..+.       +..|..+|..+.+..+|..+|+.++|.+.+..|+
T Consensus       323 ~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        323 FALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            7888899999999999999999998852       2346678899999999999999999999887765

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.98  E-value=4.5e-09  Score=100.58  Aligned_cols=169  Identities=17%  Similarity=0.107  Sum_probs=144.7

Q ss_pred             HHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHh
Q 011781          120 SLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL  199 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~  199 (477)
                      ++..++.+.+...+..++-...++.+..+...|........+-++.-++.+++.+|+|+-+++.+++.+..+=++.+. .
T Consensus       377 f~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S-~  455 (618)
T KOG3762|consen  377 FFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYS-Y  455 (618)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHH-H
Confidence            334445555566666666667888998888889888889999999999999999999999999999998888777774 5


Q ss_pred             hchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhh-hhhHHHHHHhhhHHhhcccChhHHHHHHHHH
Q 011781          200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGG-LSFGSVAGLLLAPPIIENLGWESVFYIFGLL  278 (477)
Q Consensus       200 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~  278 (477)
                      .+|.|..+...+++|+..+..|.+..+++++..||+-+..+.++.... .++|--+|.+++|.+.+.+|-|..|.+.++.
T Consensus       456 L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giA  535 (618)
T KOG3762|consen  456 LQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIA  535 (618)
T ss_pred             hcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHH
Confidence            677799999999999999999999999999999999999999997665 5699999999999999999999999999988


Q ss_pred             HHHHHHHHHHh
Q 011781          279 GIAWFSGFKIL  289 (477)
Q Consensus       279 ~~~~~~~~~~~  289 (477)
                      +++.++....+
T Consensus       536 cl~~l~~~~~i  546 (618)
T KOG3762|consen  536 CLVTLALFISI  546 (618)
T ss_pred             HHHHHHHHHHh
Confidence            88776665554

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.95  E-value=6.1e-08  Score=91.32  Aligned_cols=278  Identities=11%  Similarity=0.061  Sum_probs=163.7

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhh----hcChhHHHHHH-HHH
Q 011781          115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI----FGGRKVLQTGV-LIW  189 (477)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~g~r~~~~~~~-~~~  189 (477)
                      .++.+....+-..+++..-..+.+++.+++|++....+.+....-+...+.+++.|..+||    +||||.++... +..
T Consensus        33 ~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i  112 (498)
T KOG0637|consen   33 KLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLI  112 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHH
Confidence            3444444445555677777778888899999999999999999999999999999999995    89988877654 344


Q ss_pred             HHHHHHHHHhhchH-----------------HHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhh-HHHHHHhhhhhH
Q 011781          190 SLATALLPLLAGFM-----------------PGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSR-AVSFVFGGLSFG  251 (477)
Q Consensus       190 ~~~~~~~~~~~~~~-----------------~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~g  251 (477)
                      +++.++++ .+.++                 ..+++...+.-++.-......-+++.|...++++.+ +++.+..+..+|
T Consensus       113 ~~~l~Lig-~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avG  191 (498)
T KOG0637|consen  113 AVSLFLIG-YAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVG  191 (498)
T ss_pred             HHHHhhhh-hHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhc
Confidence            44554443 22221                 123444455556666778888999999997766666 999999999999


Q ss_pred             HHHHHhhhHHhhccc--Ch---hHHHHHHHHHHHHHHHHHHHh-ccCCc-----CCCCCCCCcchhhhhhhhhhhhHHhh
Q 011781          252 SVAGLLLAPPIIENL--GW---ESVFYIFGLLGIAWFSGFKIL-QEGET-----SNGATLAPRSNYINMKKSLSASLEEM  320 (477)
Q Consensus       252 ~~ig~~~~~~l~~~~--g~---~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (477)
                      +.+|-.+++++--+.  .+   ...+..+..+-...+.-..+. .++..     .+++...+. ...+.+.......++.
T Consensus       192 nvLGY~~g~y~~~~~~~~Ft~~~~~~~~C~~~~~~~~~~v~L~~i~~~~~l~~~~~~~~s~~~-~~~~~~~~~~~~~~e~  270 (498)
T KOG0637|consen  192 NVLGYALGSYLGLYKIFPFTLTTACDLYCANLKLCFFLEVTLLLIETSESLWYPQEKPLSPKG-TTARSKSSKLPFLLEI  270 (498)
T ss_pred             ceeeeecccccCceEEeehHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccCCCCCc-ccccccccCcchHHHH
Confidence            999988887432111  01   111111111111111111111 11100     000000000 0000000000000010


Q ss_pred             ccCCCCCCHHHH-hhcHHHHHHHHHHHHhHHHHHHHhhhhhHHHHH-hhCCchhh----------------hHHHHHHHH
Q 011781          321 GESLKDVPWKAI-FRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSE-ELSLNLTE----------------AAWVSILPP  382 (477)
Q Consensus       321 ~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~----------------~g~~~~~~~  382 (477)
                              +..+ ...|.+|.+++...+...+...+..|...++-+ .++-++..                -.+-+.+..
T Consensus       271 --------fG~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins  342 (498)
T KOG0637|consen  271 --------FGALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNS  342 (498)
T ss_pred             --------hchHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHH
Confidence                    1112 234678888888888888888877777766643 34433321                124456666


Q ss_pred             HHHHHHHHhhhhchhHHHhc
Q 011781          383 LASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       383 ~~~~~~~~~~g~l~dr~g~~  402 (477)
                      +...+.+....++.+|+|.|
T Consensus       343 ~~lgi~S~~~~~l~~~~g~r  362 (498)
T KOG0637|consen  343 IVLGIYSLLVEKLSRKFGTR  362 (498)
T ss_pred             HHHHHHHHHHHHHHHhcCcc
Confidence            77777788888999999865

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.93  E-value=7.5e-07  Score=84.68  Aligned_cols=305  Identities=15%  Similarity=0.112  Sum_probs=167.5

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhh
Q 011781          152 GLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARS  231 (477)
Q Consensus       152 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~  231 (477)
                      +.+.-+..+...+..+.+.++.+|+..+.-..+..++..++.++. .++++.+.-+++.++.+++.|..-....++.. .
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~v-a~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~  139 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLV-AFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-F  139 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhhe-eeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-h
Confidence            446667777888888888999999876555555556767777776 46677788888899999998888877777644 5


Q ss_pred             cCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccC--hhHHHHHHHHHHHHHHHHHHHh-ccCCcCCCCCCCCcchhhh
Q 011781          232 IPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG--WESVFYIFGLLGIAWFSGFKIL-QEGETSNGATLAPRSNYIN  308 (477)
Q Consensus       232 ~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  308 (477)
                      +++    ...+-+.++.+.++++|+..--.+.+ .|  .|..+++...+.++..+.++++ +.++........+.+...+
T Consensus       140 y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~~~~  214 (402)
T PF02487_consen  140 YGK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESEDEAE  214 (402)
T ss_pred             cCc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCCCccc
Confidence            553    35677888889999999887766655 44  5777887777766655554444 3332221111111100000


Q ss_pred             hhhhhhhhHHhh-ccCCCCCCHHHHh-hcHHHHHHHHHHHHhHHHHHHHhh-hhhHHHHH-hhCCchhhhHHHHHHHHHH
Q 011781          309 MKKSLSASLEEM-GESLKDVPWKAIF-RSKAVWAMIYAHFCGSWGHYTCLS-WLPTYFSE-ELSLNLTEAAWVSILPPLA  384 (477)
Q Consensus       309 ~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~-~~g~~~~~~g~~~~~~~~~  384 (477)
                       +.....+.++. .+...+..+++-+ +-+.++..++-.++.++.++.++. ..+...-. ...-...+..+....+.++
T Consensus       215 -~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y~~~YQ~G  293 (402)
T PF02487_consen  215 -DDLLESETSESKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWYQLLYQLG  293 (402)
T ss_pred             -ccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHHHHHHHHH
Confidence             00000000000 0111122222222 223333344445555556555433 33333211 1122234455666667777


Q ss_pred             HHHHHHhhhhchhHHHhcCcccceehhhhhHHh-hhhhHHHHhhhccc-CCCchHHHHHHHHHHHHhhhhhhhhhhHhhh
Q 011781          385 SVLVTSIAAQFADNLIATGVETTMVRKICQTIA-FLSPAVCMTLSSID-LGLPHWEIVGILTAGLALSSFALSGLYCTHQ  462 (477)
Q Consensus       385 ~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~-~~~~~~~~~l~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  462 (477)
                      -.++|--...+  |+  |       +.++..+. .+-.++.++-.... .++.+...+.++..|...++.+......+..
T Consensus       294 VFISRSS~~~~--ri--r-------~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~  362 (402)
T PF02487_consen  294 VFISRSSLPFF--RI--R-------RLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISE  362 (402)
T ss_pred             Hhhhhcceeee--eh--h-------hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence            77776544332  22  1       11111111 11111111111111 1233334456677788888888888888888


Q ss_pred             ccCccchhhhhhh
Q 011781          463 DISPEYASILLYL  475 (477)
Q Consensus       463 ~~~p~~~g~~~gl  475 (477)
                      +.++++|..++|.
T Consensus       363 ~~~~~~REFslg~  375 (402)
T PF02487_consen  363 EVPPEDREFSLGA  375 (402)
T ss_pred             cCCHHHHHHHHHH
Confidence            8999999888775

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.91  E-value=4.8e-08  Score=95.76  Aligned_cols=155  Identities=15%  Similarity=0.061  Sum_probs=107.6

Q ss_pred             HHHHHhhhhHHHHhHHhhhhhh--CCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhh
Q 011781          123 FVICNMDKVNLSVAIIPMSHRF--GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA  200 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~--g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~  200 (477)
                      .++..........+++.+.++.  +.+....+...+.+..+..++.++.+++.||+++|+++.+..++..+..++.. ..
T Consensus       241 ~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~-~~  319 (410)
T TIGR00885       241 QFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSI-FA  319 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-Hc
Confidence            3333333333445555554444  34444445567777788899999999999999999998888777777666664 34


Q ss_pred             chHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhccc------ChhHHHHH
Q 011781          201 GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL------GWESVFYI  274 (477)
Q Consensus       201 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~------g~~~~~~~  274 (477)
                      +... .....++.|++.+..+|...++..+..+++.+....++...  .+|+.+.|++.|++.|..      +.+..|++
T Consensus       320 ~~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~  396 (410)
T TIGR00885       320 GGHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFIL  396 (410)
T ss_pred             CChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHHhcccccCccchHHHH
Confidence            4423 35677888899999999999999999985544333333333  399999999999999954      47778877


Q ss_pred             HHHHHHH
Q 011781          275 FGLLGIA  281 (477)
Q Consensus       275 ~~~~~~~  281 (477)
                      ..++.+.
T Consensus       397 ~~~~~~~  403 (410)
T TIGR00885       397 PLLCFAV  403 (410)
T ss_pred             HHHHHHH
Confidence            5544433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.90  E-value=8.8e-08  Score=95.75  Aligned_cols=174  Identities=14%  Similarity=0.026  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHHhhhhHHHHhHHhhhhh-hCCCc----chhhHHHHHHHHHHHHhhhhhhhhhhhhcC-----hhHH--H
Q 011781          116 IGTTSLAFVICNMDKVNLSVAIIPMSHR-FGWNS----SVAGLVQSSFFWGYALSQLPGGWLAKIFGG-----RKVL--Q  183 (477)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~----~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~-----r~~~--~  183 (477)
                      +..+++..++...........++...++ .+.+.    ...+++.+++.+..++.+++..++..|.+|     +...  .
T Consensus       274 ~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~  353 (475)
T TIGR00924       274 YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFT  353 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Confidence            3344444444445554555545544333 33322    226789999999999888886654444333     3333  6


Q ss_pred             HHHHHHHHHHHHHHHh--------hchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHH
Q 011781          184 TGVLIWSLATALLPLL--------AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAG  255 (477)
Q Consensus       184 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig  255 (477)
                      +|.++.+++.+..+..        ..+++++++..++.++|+....|...+++.+..|++.||+++|++.....+|..++
T Consensus       354 ~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~  433 (475)
T TIGR00924       354 LGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLG  433 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777777777665421        35778899999999999999999999999999999999999999999999999999


Q ss_pred             HhhhHHhhcccChhHHHHHHHHHHHHHHHHHHHh
Q 011781          256 LLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL  289 (477)
Q Consensus       256 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  289 (477)
                      +.+.....+..+|.+.|...+++.++..++.+++
T Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (475)
T TIGR00924       434 GYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALM  467 (475)
T ss_pred             HHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence            9999888777789988888887777665555443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.90  E-value=8.7e-12  Score=124.34  Aligned_cols=180  Identities=19%  Similarity=0.113  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHH
Q 011781          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (477)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (477)
                      +.+..+.+..+....+......+.+.+.+..+.+..  -.......+...++.++...+.||+|||++++.+..+.+++.
T Consensus       253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~  330 (451)
T PF00083_consen  253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICS  330 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccc
Confidence            344334344434344445555667778888887776  122223344555677777899999999999998887777666


Q ss_pred             HHHH---Hh-hch----HHHHHHHHHHHHhhcc-chhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhc
Q 011781          194 ALLP---LL-AGF----MPGLVLSRVLVGIGEG-VSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE  264 (477)
Q Consensus       194 ~~~~---~~-~~~----~~~~~~~~~l~g~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~  264 (477)
                      +.++   .. .++    -...++...+...+.+ +..+....+.+|.+|.+.|+++.++......++.++++.+...+.+
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~  410 (451)
T PF00083_consen  331 LILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFN  410 (451)
T ss_pred             cccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5553   11 111    0112222222222222 3446667888999999999999999999999999999999888887


Q ss_pred             ccChhHHHHHHHHHHHH-HHHHHHHhccCCcC
Q 011781          265 NLGWESVFYIFGLLGIA-WFSGFKILQEGETS  295 (477)
Q Consensus       265 ~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  295 (477)
                      ..+-...+++.+++.++ ..+..+++||++.+
T Consensus       411 ~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~  442 (451)
T PF00083_consen  411 NLGGWGVFLIFAGVCLIAIIFVYFFLPETKGK  442 (451)
T ss_pred             cccccccchhhHHHHHHHHhheeEEEeeCCCC
Confidence            77633455555544444 44455566776544

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.88  E-value=1.6e-08  Score=99.47  Aligned_cols=183  Identities=15%  Similarity=0.066  Sum_probs=126.6

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHhhhhHHHHhHHhh-hhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcCh-----
Q 011781          106 WKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGR-----  179 (477)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----  179 (477)
                      +++..++. .+..+.++.+........+..+.|.+ .+.+|++..+.|++.++..+...+..+++|.++||.-+|     
T Consensus       251 ~~~i~ts~-~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t  329 (466)
T KOG2532|consen  251 YKAILTSP-PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSET  329 (466)
T ss_pred             HHHHHcCH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchH
Confidence            44333333 45566677778888888888888884 556899999999999999999999999999999987552     


Q ss_pred             ---hH-HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhc-cchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHH
Q 011781          180 ---KV-LQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGE-GVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVA  254 (477)
Q Consensus       180 ---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i  254 (477)
                         |+ -.++....++..+++++.........+..+..+.+. |...+....-..+.. |++-+..+|+.+....+..++
T Consensus       330 ~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~  408 (466)
T KOG2532|consen  330 TVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFI  408 (466)
T ss_pred             hHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHH
Confidence               22 234444555555555444432221222222222222 333333333333434 488999999999999999999


Q ss_pred             HHhhhHHhhcc---cChhHHHHHHHHHHHHHHHHHHHhc
Q 011781          255 GLLLAPPIIEN---LGWESVFYIFGLLGIAWFSGFKILQ  290 (477)
Q Consensus       255 g~~~~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~  290 (477)
                      +|.+.|.+.+.   ..|+++|++.+++.++..+++.++-
T Consensus       409 ~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  409 APLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             HHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEee
Confidence            99999999842   3699999999999888776666553

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.87  E-value=7.1e-08  Score=94.38  Aligned_cols=135  Identities=15%  Similarity=0.016  Sum_probs=97.8

Q ss_pred             HHhHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHh--hchHHHHHHHH
Q 011781          134 SVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL--AGFMPGLVLSR  210 (477)
Q Consensus       134 ~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  210 (477)
                      ....+. +.+.+|.++.+.+++.....++..++.++.+++.||++++........+.+.........  ..+.+.+++..
T Consensus       227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (394)
T PRK11652        227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPA  306 (394)
T ss_pred             HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            333444 444589999999999999999999999999999999984333322222222111111111  22345667778


Q ss_pred             HHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChh
Q 011781          211 VLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWE  269 (477)
Q Consensus       211 ~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~  269 (477)
                      ++.|++.+...|...++..+..| ++++.+.++.+....+|..+++.+++.+.....+.
T Consensus       307 ~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~  364 (394)
T PRK11652        307 ALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTGQFS  364 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCchHH
Confidence            88999999999999999999887 68899999999999999999999999887653333

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.85  E-value=9.1e-08  Score=89.06  Aligned_cols=166  Identities=19%  Similarity=0.170  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHhhhhh-hCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHH
Q 011781          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (477)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (477)
                      +.+....++.|+..........+++.+..+ .|.+..+.+...+.+..+.++|.++..++..|+...|.+....++..+.
T Consensus       236 ~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill  315 (422)
T COG0738         236 KHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILL  315 (422)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            334445556666666677777777776666 8899999999999999999999999999999999999988876655444


Q ss_pred             HHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHH
Q 011781          193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF  272 (477)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~  272 (477)
                      ++.. .+.++ ...+...++.|+..+..+|...+...+..+  +.....|..-....+|+++-|.+.|++.|..|-...+
T Consensus       316 ~~~~-~l~~g-~v~~~~l~~ig~F~simfPTIfslal~~l~--~~ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~  391 (422)
T COG0738         316 LLAV-ALIGG-VVALYALFLIGLFNSIMFPTIFSLALKNLG--EHTSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTF  391 (422)
T ss_pred             HHHH-HHhcC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccC--ccccccceeeeeheecchHHHHHHHHHHHhhhhHHHH
Confidence            4444 35555 334556788999999999999999999998  3344455566677889999999999999999988887


Q ss_pred             HHHHHHHHHHH
Q 011781          273 YIFGLLGIAWF  283 (477)
Q Consensus       273 ~~~~~~~~~~~  283 (477)
                      .+...++.+..
T Consensus       392 ~~~pllc~lyV  402 (422)
T COG0738         392 LIVPLLCYLYV  402 (422)
T ss_pred             HHHHHHHHHHH
Confidence            75555555544

>TIGR00788 fbt folate/biopterin transporter

Probab=98.83  E-value=2.2e-08  Score=99.75  Aligned_cols=138  Identities=14%  Similarity=0.099  Sum_probs=114.2

Q ss_pred             hhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhh---------chHHHHHHHHH
Q 011781          141 SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA---------GFMPGLVLSRV  211 (477)
Q Consensus       141 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~  211 (477)
                      .+.+|.++.++|++.....++.+++....+++.+|++.|+++.++.++.+++.+......         ++.+.++...+
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~  359 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI  359 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence            357899999999999999999999999999999999999999999888877664432111         22234556678


Q ss_pred             HHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccC-----hhHHHHHHHHH
Q 011781          212 LVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-----WESVFYIFGLL  278 (477)
Q Consensus       212 l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g-----~~~~~~~~~~~  278 (477)
                      +.+++.+....+...++.+..|++.+|..+++..+..++|..+++.+++.+.+..|     ++..+....+.
T Consensus       360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~  431 (468)
T TIGR00788       360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGH  431 (468)
T ss_pred             HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHH
Confidence            88888888888999999999999999999999999999999999999999998877     55544443333

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK11462 putative transporter; Provisional

Probab=98.81  E-value=9.1e-08  Score=95.29  Aligned_cols=144  Identities=7%  Similarity=-0.041  Sum_probs=93.1

Q ss_pred             HHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhc-hH
Q 011781          125 ICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG-FM  203 (477)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-~~  203 (477)
                      +.............++.+...-++...+.+.+.+.++.+++.+++++++||+|+|+.+..+..+..+..++..+... +.
T Consensus       239 ~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~  318 (460)
T PRK11462        239 FNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQAS  318 (460)
T ss_pred             HHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHH
Confidence            33333333333344433333334445566777888888999999999999999998877554444333333322222 22


Q ss_pred             HHHHHHHHHHHhhccchhhhHHHHhhhhcC-------CcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccCh
Q 011781          204 PGLVLSRVLVGIGEGVSPSAATDLIARSIP-------LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW  268 (477)
Q Consensus       204 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~  268 (477)
                      ..+++..++.|++.+...+...++++|..+       .+..|..++.......+|..+|+.++|.+.+..|+
T Consensus       319 ~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        319 ITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            334555567788777777777788888765       33345556777788889999999999988765554

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.80  E-value=1.9e-08  Score=92.93  Aligned_cols=166  Identities=16%  Similarity=0.180  Sum_probs=126.8

Q ss_pred             HHHhhhhHHHHhHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhH--HHHHHHHHHHHHHHHHHhhc
Q 011781          125 ICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKV--LQTGVLIWSLATALLPLLAG  201 (477)
Q Consensus       125 ~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~--~~~~~~~~~~~~~~~~~~~~  201 (477)
                      .........-+.++. +.+.+..+..+.|+.+--..+.+.++..+.|.++||++.-++  ...+++..++...... +++
T Consensus       281 ~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP-~~~  359 (464)
T KOG3764|consen  281 FSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIP-FAT  359 (464)
T ss_pred             hccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhH-hhh
Confidence            344556666666666 667788666699999999999999999999999999994333  3344455554444443 567


Q ss_pred             hHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCc------chhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHH
Q 011781          202 FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE------ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIF  275 (477)
Q Consensus       202 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~  275 (477)
                      ++..+++-++..+++.+..............+.+      ..|...++...++.+|.++||.++|.+.+..|++|...+.
T Consensus       360 ~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~ii  439 (464)
T KOG3764|consen  360 SIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTII  439 (464)
T ss_pred             hHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHH
Confidence            7788888888888887777766666666555432      4578999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcc
Q 011781          276 GLLGIAWFSGFKILQE  291 (477)
Q Consensus       276 ~~~~~~~~~~~~~~~~  291 (477)
                      ++..++...+..+++.
T Consensus       440 g~~n~iyapvl~ll~~  455 (464)
T KOG3764|consen  440 GILNLIYAPVLLLLRI  455 (464)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9998887666655543

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.80  E-value=4.6e-08  Score=94.40  Aligned_cols=154  Identities=16%  Similarity=0.139  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHhhh-hhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHH
Q 011781          114 KLIGTTSLAFVICNMDKVNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (477)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (477)
                      +.+...++..++......+.+....++. ..+|.++....+.......+.+++.+++.++.+|+|+|+++.++.++..++
T Consensus       236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~  315 (467)
T COG2211         236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVG  315 (467)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHH
Confidence            3344444566666666677777666643 446777777778888888888888999999999999999999999999998


Q ss_pred             HHHHHHhh-chHHHHHHHHHHHHhhccchhhhHHHHhhhhcC-------CcchhhHHHHHHhhhhhHHHHHHhhhHHhhc
Q 011781          193 TALLPLLA-GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIP-------LEERSRAVSFVFGGLSFGSVAGLLLAPPIIE  264 (477)
Q Consensus       193 ~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~  264 (477)
                      .++..+.. ++.+.+++..++.+++.+...+...++++|..+       .+.-|...+......=+|.+++..+.|++.+
T Consensus       316 ~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~  395 (467)
T COG2211         316 YLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG  395 (467)
T ss_pred             HHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88775444 456778888899999999999999999998874       2334777888888888999999999998887


Q ss_pred             ccC
Q 011781          265 NLG  267 (477)
Q Consensus       265 ~~g  267 (477)
                      ..|
T Consensus       396 ~~G  398 (467)
T COG2211         396 AIG  398 (467)
T ss_pred             HcC
Confidence            655

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.77  E-value=3.9e-08  Score=95.09  Aligned_cols=121  Identities=17%  Similarity=0.113  Sum_probs=87.9

Q ss_pred             hhHHHHhHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhc---hHHH
Q 011781          130 KVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG---FMPG  205 (477)
Q Consensus       130 ~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~---~~~~  205 (477)
                      ........|. +.+.+|.++.+.+++.++..+...++.+++|++.||+|+|+.+..+..+...+..++.....   +.+.
T Consensus       241 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (366)
T TIGR00886       241 FLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAV  320 (366)
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHH
Confidence            3334444554 45668999999999999999999999999999999999998877776665555444432222   4444


Q ss_pred             HHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhH
Q 011781          206 LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFG  251 (477)
Q Consensus       206 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  251 (477)
                      .++..++.+++.+...+...+.+.+..| +++|.++|+.+...++|
T Consensus       321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       321 FIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            4555555555666666667777888876 79999999998887765

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.77  E-value=4e-07  Score=85.24  Aligned_cols=160  Identities=33%  Similarity=0.484  Sum_probs=124.4

Q ss_pred             HHHHHhhhhHHHHhHHhhhhhhCCCc--chhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhh
Q 011781          123 FVICNMDKVNLSVAIIPMSHRFGWNS--SVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA  200 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~g~s~--~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~  200 (477)
                      .+.............+.+..+++.+.  ...++..+.+.++..++.++.|.+.||+|||+.+..+.....++.++.....
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~   90 (338)
T COG0477          11 ALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP   90 (338)
T ss_pred             HHHHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc
Confidence            33444666666777788878777666  4789999999999999999999999999999888887765444444443333


Q ss_pred             c-hHHHHHHHHHHHHhhccchhhhHHHHhhhhcCC-cchhhHHHHHHh-hhhhHHHHHHhhhHHhhcc--cChhHHHHHH
Q 011781          201 G-FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPL-EERSRAVSFVFG-GLSFGSVAGLLLAPPIIEN--LGWESVFYIF  275 (477)
Q Consensus       201 ~-~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~g~~ig~~~~~~l~~~--~g~~~~~~~~  275 (477)
                      . ..+.+++.|++.|++.+...+...+++.+..++ ++|+...+.... ...+|..++|.+++.+...  .+|++.|.+.
T Consensus        91 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (338)
T COG0477          91 NVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLA  170 (338)
T ss_pred             cchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            3 468889999999999999999999999999987 678999998888 5888889999888777654  5799866666


Q ss_pred             HHHHHHH
Q 011781          276 GLLGIAW  282 (477)
Q Consensus       276 ~~~~~~~  282 (477)
                      .......
T Consensus       171 ~~~~~~~  177 (338)
T COG0477         171 ALLGLLL  177 (338)
T ss_pred             HHHHHHH
Confidence            5555433

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.75  E-value=3e-06  Score=77.99  Aligned_cols=263  Identities=13%  Similarity=0.079  Sum_probs=156.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhh-----hhcChhHHHHH-H
Q 011781          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK-----IFGGRKVLQTG-V  186 (477)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d-----r~g~r~~~~~~-~  186 (477)
                      ++-+..+...+.+++.-.+... .+|.+.+.-|.|-++.+....++. . ...-++|.++.|     |+||||..++- .
T Consensus        30 ~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~-P-~sLKllWaPiVDs~y~k~~GrrksWvvp~q  106 (510)
T KOG3574|consen   30 RSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW-P-FSLKLLWAPIVDSVYSKRFGRRKSWVVPCQ  106 (510)
T ss_pred             hhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh-H-HHHHHHHHhhhHHHHHHhhccccceeeehH
Confidence            3455566667778888777777 899988888888877665433322 1 134568889999     99999876542 2


Q ss_pred             HHHHHHHHHHHHhh----------chHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHH
Q 011781          187 LIWSLATALLPLLA----------GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGL  256 (477)
Q Consensus       187 ~~~~~~~~~~~~~~----------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~  256 (477)
                      .+.+..+..++...          ++...+....++.-+..+.-..+...+.-.+..+++.|.+......+...|.+++.
T Consensus       107 ~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~  186 (510)
T KOG3574|consen  107 YLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGN  186 (510)
T ss_pred             HHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhc
Confidence            33333333332221          12222333446666777778888888888888889988888777777777777765


Q ss_pred             hhhHHhhc-------ccCh---------hHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhh
Q 011781          257 LLAPPIIE-------NLGW---------ESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEM  320 (477)
Q Consensus       257 ~~~~~l~~-------~~g~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (477)
                      .+.-.+..       ..+|         ...+++.+.+.++.-.+..+..++++... .   ++......+.        
T Consensus       187 ~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~-~---~e~~~~i~~~--------  254 (510)
T KOG3574|consen  187 VVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESV-D---EELELGIHES--------  254 (510)
T ss_pred             ceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhh-h---hhhhcCHHHH--------
Confidence            54433322       0112         23445555555555555545444332221 1   1100000000        


Q ss_pred             ccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhch
Q 011781          321 GESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFA  396 (477)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~  396 (477)
                           ..-++++++-|.+..++......-.++.+-....+.-+.| .|++....+++.....-..++.....|+++
T Consensus       255 -----yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle-~Gv~ke~Lal~~v~~~plqI~l~~~~gk~t  324 (510)
T KOG3574|consen  255 -----YKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLE-HGVPKEELALIAVPLVPLQIALPLYIGKWT  324 (510)
T ss_pred             -----HHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHH-cCCChhHheeeeeehhhHHHhhhhhheeec
Confidence                 0013466677777777777777777888888888888877 699988877665333334444444444443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.75  E-value=4.7e-07  Score=85.11  Aligned_cols=174  Identities=19%  Similarity=0.138  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhh-hhcChhHHHHHHHHHHH
Q 011781          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK-IFGGRKVLQTGVLIWSL  191 (477)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d-r~g~r~~~~~~~~~~~~  191 (477)
                      ++++..+++..+...+...+.-   |+=.+.||++..+...+.+....+..++-...|++.. |.++++.-.+++.+..+
T Consensus       211 ~~f~~fl~l~t~a~~~QD~iLE---Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~  287 (403)
T PF03209_consen  211 RRFFVFLFLGTLAFFMQDVILE---PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGAL  287 (403)
T ss_pred             hHHHHHHHHHHHHHHhhHHHcC---CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence            3455455444443333333222   3345668999999999999999999999999998887 67777777777666655


Q ss_pred             HHHHHH--HhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcc----
Q 011781          192 ATALLP--LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN----  265 (477)
Q Consensus       192 ~~~~~~--~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~----  265 (477)
                      ++.++.  ....+.+.+....++.|++.|.+.....+.+.+...+++.|..+|.+.....++..+|..++|.+.|.    
T Consensus       288 ~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~  367 (403)
T PF03209_consen  288 AFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRAL  367 (403)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            554432  23345678889999999999999999999999999999999999999999999999999999988753    


Q ss_pred             ------cChhHHHHHHHHHHHHHHHHHHHh
Q 011781          266 ------LGWESVFYIFGLLGIAWFSGFKIL  289 (477)
Q Consensus       266 ------~g~~~~~~~~~~~~~~~~~~~~~~  289 (477)
                            .+|..+|.+.+++.++.+.+...+
T Consensus       368 ~~~~~~~aY~~VF~lEa~ll~~a~~ll~~l  397 (403)
T PF03209_consen  368 FGNSPALAYGVVFALEAVLLLAALVLLGRL  397 (403)
T ss_pred             ccCCcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence                  246677777777766666555443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.70  E-value=3.6e-07  Score=89.84  Aligned_cols=159  Identities=12%  Similarity=-0.012  Sum_probs=101.8

Q ss_pred             HHHHhhhhHHHHhHHhh-hhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHH----H
Q 011781          124 VICNMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP----L  198 (477)
Q Consensus       124 ~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~----~  198 (477)
                      ++.......+....|.+ .+.+|.++.+.++.......+..++..+.+++.++..+++.+.....+..++.++..    .
T Consensus       228 ~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~  307 (413)
T PRK15403        228 SLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLL  307 (413)
T ss_pred             HHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444555566764 455699999999998888888888888888877554444433222222222222221    1


Q ss_pred             hhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHH
Q 011781          199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLL  278 (477)
Q Consensus       199 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~  278 (477)
                      ..++++..++..++.++|.+...|......-. -....+|++.++.+.....+..+++.+++++.++ +-++.|...+++
T Consensus       308 ~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~-~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~  385 (413)
T PRK15403        308 WPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLF-SNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVV  385 (413)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhHHHHHHHhc-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHH
Confidence            23333345677888888888887777753321 1223579999999999999999999999988766 566677666655


Q ss_pred             HHHHHH
Q 011781          279 GIAWFS  284 (477)
Q Consensus       279 ~~~~~~  284 (477)
                      ..+...
T Consensus       386 ~~~~~~  391 (413)
T PRK15403        386 AGVIVV  391 (413)
T ss_pred             HHHHHH
Confidence            544433

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.68  E-value=1.8e-08  Score=94.89  Aligned_cols=184  Identities=13%  Similarity=0.039  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhH--------HHH-HHHHHHHHhhhhhhhhhhhhcChhHHHH
Q 011781          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGL--------VQS-SFFWGYALSQLPGGWLAKIFGGRKVLQT  184 (477)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~--------~~~-~~~~~~~~~~~~~g~l~dr~g~r~~~~~  184 (477)
                      +.++..+...|+.-......+.....+.+..|+.+.+...        ... +...+++.|-++...++|++|||++.+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            4555666677777677777777777888888876655444        111 1222233366677889999999999999


Q ss_pred             HHHHHHHHHHHHHHhhch----HHHHHHHHHHHHh-hccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhh
Q 011781          185 GVLIWSLATALLPLLAGF----MPGLVLSRVLVGI-GEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA  259 (477)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~g~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~  259 (477)
                      +.+++++..+.++ .+.+    ...++++..+..+ +.-+.......+-+|.+|.+-|+...|+..+..-+|+++|....
T Consensus       384 GF~~~~i~~~~~~-~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F  462 (538)
T KOG0252|consen  384 GFFIMTIFFFVIA-GPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGF  462 (538)
T ss_pred             hHHHHHHHHHHHc-CCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHh
Confidence            9999988887775 3332    1122222222222 22233445556778999999999999999999999999999999


Q ss_pred             HHhhc-----ccChhHHHHHHHHHHHHHHHHHHHhccCCcCCCC
Q 011781          260 PPIIE-----NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGA  298 (477)
Q Consensus       260 ~~l~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (477)
                      .++.+     ..|.++++++.+.+.++..+..++++|++.+..+
T Consensus       463 ~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~le  506 (538)
T KOG0252|consen  463 LYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKGKSLE  506 (538)
T ss_pred             hHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccccCHH
Confidence            99998     7799999999999999999998889876655443

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.66  E-value=2.2e-07  Score=84.25  Aligned_cols=296  Identities=12%  Similarity=0.037  Sum_probs=185.7

Q ss_pred             HhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHH
Q 011781          164 LSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSF  243 (477)
Q Consensus       164 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~  243 (477)
                      +.-++.=.+.|....|++++.-.+.......++ .+.++.+.+-+.-++.|... ....+.++++-...+|+++.++.|.
T Consensus        57 v~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~l-v~g~sV~~mQvlE~FyG~~t-AaEIAYysYIYs~Vd~~~Yqrvt~y  134 (433)
T KOG3810|consen   57 VGLVPVFLLTDYLRYKPVVVLQALSGVPVWIML-VFGPSVKAMQVLEFFYGPAT-AAEIAYYSYIYSKVDPEMYKRVTGY  134 (433)
T ss_pred             HHHHHHHHHhhhhhcceeeeeeccchhHHHHHH-HhcCCchheeeehhhcChHH-HHHHhhhheeeeecCHHHHHHHHHH
Confidence            333444467898888888776544443444444 46777788888888888874 3456778888888899999999999


Q ss_pred             HHhhhhhHHHHHHhhhHHhhcc--cChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhc
Q 011781          244 VFGGLSFGSVAGLLLAPPIIEN--LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG  321 (477)
Q Consensus       244 ~~~~~~~g~~ig~~~~~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (477)
                      ..+..-.|...|..++-.+...  .++...=++......+..+...++|+.++..-....+++...       .+.++..
T Consensus       135 ~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~v-------~~~e~~~  207 (433)
T KOG3810|consen  135 CRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKISV-------GDLEEMN  207 (433)
T ss_pred             hHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhccccccee-------ccchhcC
Confidence            9999999999999888887754  334444444444444555666667665532211111111000       0000000


Q ss_pred             cCCC------------CCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHhh-CCchhhhHHHHHHHHHHHHHH
Q 011781          322 ESLK------------DVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEEL-SLNLTEAAWVSILPPLASVLV  388 (477)
Q Consensus       322 ~~~~------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~~~~  388 (477)
                      .+.+            ...+....+||.+....+-..+..++++....+....-.+.- +-....-|..-++..+.+.++
T Consensus       208 ~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~  287 (433)
T KOG3810|consen  208 PQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIA  287 (433)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHH
Confidence            0000            112445567888877777777777888887777777765532 111223366677778888888


Q ss_pred             HHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccc
Q 011781          389 TSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEY  468 (477)
Q Consensus       389 ~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~  468 (477)
                      .++.|.+.-++.++       +..++.++.+.-+.+++++.. .+..++..+..+++..............+..++..|.
T Consensus       288 ~~~~g~l~i~w~r~-------g~~ll~~~s~~~agllf~m~~-t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~  359 (433)
T KOG3810|consen  288 ALAAGYLNINWNRW-------GDLLLAVGSAVQAGLLFIMAQ-TQHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSEL  359 (433)
T ss_pred             HHHHHheeeccchh-------hHHHHHHHHHHhhhhhhhhhc-ccceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhh
Confidence            89999887666544       345555554444444444433 3445556666777777777666667777778888888


Q ss_pred             hhhhhhhc
Q 011781          469 ASILLYLE  476 (477)
Q Consensus       469 ~g~~~gl~  476 (477)
                      -|-++|++
T Consensus       360 ~gLvFGiN  367 (433)
T KOG3810|consen  360 FGLVFGIN  367 (433)
T ss_pred             heeeeehH
Confidence            88888864

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.64  E-value=1.1e-06  Score=88.47  Aligned_cols=136  Identities=16%  Similarity=0.057  Sum_probs=101.6

Q ss_pred             hhHHHHHHHHHHHHhhhhh----hhhhhhhcChhHHHHHHHHHHHHHHHHHHhhch--------HHHHHHHHHHHHhhcc
Q 011781          151 AGLVQSSFFWGYALSQLPG----GWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF--------MPGLVLSRVLVGIGEG  218 (477)
Q Consensus       151 ~g~~~~~~~~~~~~~~~~~----g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~g~~~~  218 (477)
                      .+++.++..+..++..++.    +++.+|++..+.+.++.++.+++++++......        .+++++..++.|+|+.
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            5677777887777776666    555556666678888889988888776433221        3578889999999999


Q ss_pred             chhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhc----------ccChhHHHHHHHHHHHHHHHHH
Q 011781          219 VSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE----------NLGWESVFYIFGLLGIAWFSGF  286 (477)
Q Consensus       219 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~----------~~g~~~~~~~~~~~~~~~~~~~  286 (477)
                      ...|...+++.+..|++.||+++|.+.....+|..++..+.+....          ..++.+.|...++++++..++.
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~  475 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLM  475 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888888888777777653221          1136778887777665544333

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.61  E-value=1.7e-07  Score=94.83  Aligned_cols=183  Identities=19%  Similarity=0.109  Sum_probs=123.1

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHH
Q 011781          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (477)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (477)
                      +++....+.+..+.+..+......+.+.+.+..|.+... .+...+..+...++..+...+.||+|||+.++.+...+.+
T Consensus       293 ~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~  371 (513)
T KOG0254|consen  293 RKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSI  371 (513)
T ss_pred             HHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHH
Confidence            345555666777777777788888888888888877554 5555566666777778889999999999999999998888


Q ss_pred             HHHHHHHhhch------------HHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhh
Q 011781          192 ATALLPLLAGF------------MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA  259 (477)
Q Consensus       192 ~~~~~~~~~~~------------~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~  259 (477)
                      +.++++.....            +..+....+.......+..+....+.+|.+|.+-|+++.++......+...+-....
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~  451 (513)
T KOG0254|consen  372 CLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFF  451 (513)
T ss_pred             HHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            88766533111            112222222233333444566667889999999999999998888887776665555


Q ss_pred             HHhhcccChhHHHHHHHHHHHHHHH--HHHHhccCCcC
Q 011781          260 PPIIENLGWESVFYIFGLLGIAWFS--GFKILQEGETS  295 (477)
Q Consensus       260 ~~l~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  295 (477)
                      ..+.+..++...|...+.++.+...  ..+++||++..
T Consensus       452 ~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~  489 (513)
T KOG0254|consen  452 PFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGL  489 (513)
T ss_pred             HHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCC
Confidence            5555554445555555555544443  44555655443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.60  E-value=1.5e-06  Score=85.66  Aligned_cols=179  Identities=9%  Similarity=-0.022  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHhh-hh-hhCCCcc------h----hhHHHHHHHHHHHHhhhhhhhhhhhhcC-h
Q 011781          113 YKLIGTTSLAFVICNMDKVNLSVAIIPM-SH-RFGWNSS------V----AGLVQSSFFWGYALSQLPGGWLAKIFGG-R  179 (477)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~g~s~~------~----~g~~~~~~~~~~~~~~~~~g~l~dr~g~-r  179 (477)
                      .+.+..+++.+++..++...+..+...+ .+ .++.++.      +    -.+...++.+...+.+++..++.+|+|+ |
T Consensus       257 P~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k  336 (477)
T TIGR01301       257 PRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGK  336 (477)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            3556677777777777777766665553 32 2343221      1    2344455666666777788889999985 7


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhc---h-----------------HHHHHHHHHHHHhhccchhhhHHHHhhhhcCC--cch
Q 011781          180 KVLQTGVLIWSLATALLPLLAG---F-----------------MPGLVLSRVLVGIGEGVSPSAATDLIARSIPL--EER  237 (477)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~---~-----------------~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~--~~r  237 (477)
                      ++..++.++.+++.....+...   +                 .+..++...+.|+..+..+..-++++++..++  ++.
T Consensus       337 ~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~  416 (477)
T TIGR01301       337 RLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQ  416 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCC
Confidence            7778887877777766643332   1                 26677888999999999999999999999984  456


Q ss_pred             hhHHHHHHhhhhhHHHHHHhhhHHhhcccC--hhHHHHHHHHHHHHHHHHHHHhcc
Q 011781          238 SRAVSFVFGGLSFGSVAGLLLAPPIIENLG--WESVFYIFGLLGIAWFSGFKILQE  291 (477)
Q Consensus       238 ~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~  291 (477)
                      |..+|+.+.+..+.+++..+..|.+.+.+|  -.+.+.+.++..++..+..+++.+
T Consensus       417 G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~  472 (477)
T TIGR01301       417 GLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLP  472 (477)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999998888665554  566788888888777666655543

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.53  E-value=2.8e-06  Score=85.09  Aligned_cols=138  Identities=14%  Similarity=0.040  Sum_probs=103.9

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhcChhH-------HHHHHHHHHHHHHHHH-----Hh----hchHHHHHHHHHHHH
Q 011781          151 AGLVQSSFFWGYALSQLPGGWLAKIFGGRKV-------LQTGVLIWSLATALLP-----LL----AGFMPGLVLSRVLVG  214 (477)
Q Consensus       151 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-------~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~~~~l~g  214 (477)
                      .+++.+++.+..++..++.+++.||+++|+.       +.+|.++.+++.+...     ..    ..+.+.++...++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            3556667777788889999999999999873       6677676666654321     11    123566778899999


Q ss_pred             hhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhc----------ccChhHHHHHHHHHHHHHHH
Q 011781          215 IGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE----------NLGWESVFYIFGLLGIAWFS  284 (477)
Q Consensus       215 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~----------~~g~~~~~~~~~~~~~~~~~  284 (477)
                      +|++...+...+++.+..|++.++.++|++....++|..+|..++.....          .-.+.+.|...++..++..+
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v  470 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAV  470 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988875531          11245677777766665554


Q ss_pred             HHHH
Q 011781          285 GFKI  288 (477)
Q Consensus       285 ~~~~  288 (477)
                      +.+.
T Consensus       471 ~~~~  474 (489)
T PRK10207        471 VMAL  474 (489)
T ss_pred             HHHH
Confidence            4444

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.51  E-value=7.1e-06  Score=67.67  Aligned_cols=110  Identities=15%  Similarity=0.118  Sum_probs=92.2

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhh
Q 011781          152 GLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARS  231 (477)
Q Consensus       152 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~  231 (477)
                      -.-.++......+.+++.+.+.+++|.|+.++++.+.+.+-....  +-++.+.++...++.|++.+..+.+...++.+.
T Consensus        40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~--~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~  117 (156)
T PF05978_consen   40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF--FYPNSYTLYPASALLGFGAALLWTAQGTYLTSY  117 (156)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence            334556666777888889999999999999999988887554443  445568889999999999999999999999999


Q ss_pred             cCCcchhhHHHHHHhhhhhHHHHHHhhhHHhh
Q 011781          232 IPLEERSRAVSFVFGGLSFGSVAGLLLAPPII  263 (477)
Q Consensus       232 ~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~  263 (477)
                      .+++++++..++.......+.++|.++.-.+.
T Consensus       118 s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  118 STEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             CCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998888776554

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.48  E-value=3.8e-07  Score=90.04  Aligned_cols=162  Identities=17%  Similarity=0.242  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHhhhhHHHHhHHhhhhh-hCCCcchhhHHHHHHHHHHHHhhhhhhhhhhh----hcChhHHHHHHHHHH
Q 011781          116 IGTTSLAFVICNMDKVNLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI----FGGRKVLQTGVLIWS  190 (477)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~g~r~~~~~~~~~~~  190 (477)
                      ++..+++.++.....+.+..++|.+.++ .|+|..+.+.+...+.++.+++.+++|.++||    ..+|........++.
T Consensus       275 vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~  354 (495)
T KOG2533|consen  275 VWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYA  354 (495)
T ss_pred             HHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            3456667777778888889999998777 66999999999999999999999999999999    667777666666655


Q ss_pred             HHHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcch-hhHHHHHHhhhhhHHHH-HHhhhHHhhcccCh
Q 011781          191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEER-SRAVSFVFGGLSFGSVA-GLLLAPPIIENLGW  268 (477)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r-~~~~~~~~~~~~~g~~i-g~~~~~~l~~~~g~  268 (477)
                      +...+.....+.........+....+.....+.......+...++.| -...+....+.+.++++ ++...+.....++|
T Consensus       355 ~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~  434 (495)
T KOG2533|consen  355 IIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGW  434 (495)
T ss_pred             HHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhh
Confidence            54422222333334344444444455566667777777777755443 33334444444444444 44444445556788


Q ss_pred             hHHHHHHHH
Q 011781          269 ESVFYIFGL  277 (477)
Q Consensus       269 ~~~~~~~~~  277 (477)
                      .+.|.....
T Consensus       435 ~~~f~~~~~  443 (495)
T KOG2533|consen  435 GAVFYMLVA  443 (495)
T ss_pred             hhHHHHHHH
Confidence            888854443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.36  E-value=3.9e-06  Score=83.17  Aligned_cols=68  Identities=12%  Similarity=0.118  Sum_probs=60.8

Q ss_pred             cHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHH-Hhc
Q 011781          335 SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL-IAT  402 (477)
Q Consensus       335 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~  402 (477)
                      .+.++..+...+...+.++++..++|.|+++.+|++..+++.+.+...+...++.+++|+++||+ |+|
T Consensus         8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrr   76 (493)
T PRK15462          8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNR   76 (493)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcH
Confidence            35667777777788888999999999999988999999999999999999999999999999999 876

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.33  E-value=3.4e-06  Score=60.49  Aligned_cols=70  Identities=21%  Similarity=0.166  Sum_probs=61.0

Q ss_pred             HHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHH
Q 011781          119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLI  188 (477)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~  188 (477)
                      +-..+++.....+.+.++++.+.++.|+|+.++|.+.++..+...++++++|.++||+++++.......+
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            3445666777788888999999999999999999999999999999999999999999999888766544

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.32  E-value=0.001  Score=65.93  Aligned_cols=278  Identities=11%  Similarity=0.010  Sum_probs=155.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHh-hhhhhCCCcchhhHHHHHHHH-HHHHhhhhhhhhhhhhcChhHHHHHHHHHH
Q 011781          113 YKLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFW-GYALSQLPGGWLAKIFGGRKVLQTGVLIWS  190 (477)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  190 (477)
                      ++-++.+.+..|+..+..+..-..-.. +....  .++.+.++=....+ ..++...+..++++++++.+++-+....+.
T Consensus        23 ~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~~--gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~  100 (491)
T PF03219_consen   23 LKKFLPLALMFFFILFNYTILRDLKDTLVVTAQ--GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFL  100 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCeEEEecC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            344555555555555555544433222 12222  45566666555555 344567788999999999998876655554


Q ss_pred             HHHHHHHHh--h------ch----------------------HHHHHHHHHHHHhhccchhh-hHHHHhhhhcCCcchhh
Q 011781          191 LATALLPLL--A------GF----------------------MPGLVLSRVLVGIGEGVSPS-AATDLIARSIPLEERSR  239 (477)
Q Consensus       191 ~~~~~~~~~--~------~~----------------------~~~~~~~~~l~g~~~~~~~~-~~~~~i~~~~~~~~r~~  239 (477)
                      ..+.+++++  +      ++                      .|...+..+..-+-.+...+ .-+.+..+.++.+|..|
T Consensus       101 ~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKR  180 (491)
T PF03219_consen  101 GFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKR  180 (491)
T ss_pred             HHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            444444332  0      00                      01111222222222233333 45788899999999999


Q ss_pred             HHHHHHhhhhhHHHHHHhhhHHhhc---------ccChhHHHHHHH----HHHHHHHHHHHHhccCCcCCCCCCCCcchh
Q 011781          240 AVSFVFGGLSFGSVAGLLLAPPIIE---------NLGWESVFYIFG----LLGIAWFSGFKILQEGETSNGATLAPRSNY  306 (477)
Q Consensus       240 ~~~~~~~~~~~g~~ig~~~~~~l~~---------~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (477)
                      ..++...+.++|.++++.+..++.+         .-.|...+....    +.+++......++.+....++... +..+.
T Consensus       181 fYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~-~~~~~  259 (491)
T PF03219_consen  181 FYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFY-PSAKK  259 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccc-hhhhc
Confidence            9999999999999999999888877         123543332222    222222222333322111111100 00000


Q ss_pred             hhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhh---hHHHHHHHHH
Q 011781          307 INMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTE---AAWVSILPPL  383 (477)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~g~~~~~~~~  383 (477)
                      ...         ..++..-..+++.++++|.+..+++...+++.....+....-..+++.+.-+...   .|......++
T Consensus       260 ~kk---------~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGi  330 (491)
T PF03219_consen  260 KKK---------KKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGI  330 (491)
T ss_pred             ccc---------cCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHH
Confidence            000         0000011134578889999999998888888887777776666666544322221   2445566677


Q ss_pred             HHHHHHHhhhhchhHHHhc
Q 011781          384 ASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       384 ~~~~~~~~~g~l~dr~g~~  402 (477)
                      ..++..++.+.+.+|+|-+
T Consensus       331 vtii~~~l~~~iir~~GW~  349 (491)
T PF03219_consen  331 VTIIMMFLSSNIIRRFGWR  349 (491)
T ss_pred             HHHHHHHHHHHHHHHhhHH
Confidence            7777778888888888765

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.28  E-value=1.4e-05  Score=73.91  Aligned_cols=142  Identities=20%  Similarity=0.119  Sum_probs=110.6

Q ss_pred             HHHHHhhhhHHHHhHHhh-hhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhc--ChhHHHHHHHHHHHHHHHHHHh
Q 011781          123 FVICNMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFG--GRKVLQTGVLIWSLATALLPLL  199 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g--~r~~~~~~~~~~~~~~~~~~~~  199 (477)
                      .++.......+....+.+ ...+|+++.+.|-+.+...+...+.+....+..||..  .+-.+..+..++.-..++.. .
T Consensus       270 ~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls-~  348 (451)
T KOG2615|consen  270 YFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLS-L  348 (451)
T ss_pred             HHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHh-c
Confidence            333333344444444444 4679999999999999999999999999999999877  55566655555444444443 4


Q ss_pred             hchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcc
Q 011781          200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN  265 (477)
Q Consensus       200 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~  265 (477)
                      ......+++...+..+..+...+....++....|.++||.++|+..+...++-++||+++|.+..+
T Consensus       349 ~~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W  414 (451)
T KOG2615|consen  349 ARTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW  414 (451)
T ss_pred             cccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence            455567888889999998889999999999999999999999999999999999999999987654

>PTZ00207 hypothetical protein; Provisional

Probab=98.28  E-value=9.6e-06  Score=81.86  Aligned_cols=171  Identities=11%  Similarity=-0.001  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHhhhhHHHHhHHhhhhhh-CC-CcchhhH-HHHHHHHHHHHhhhhhhhhhhh---------hcChhHHHH
Q 011781          117 GTTSLAFVICNMDKVNLSVAIIPMSHRF-GW-NSSVAGL-VQSSFFWGYALSQLPGGWLAKI---------FGGRKVLQT  184 (477)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~-s~~~~g~-~~~~~~~~~~~~~~~~g~l~dr---------~g~r~~~~~  184 (477)
                      ++++..+++.......+..-+.++.+.+ |. ...+... +.++..++..+|.+..|.+...         +.|--.+.+
T Consensus       356 Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~  435 (591)
T PTZ00207        356 WCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFI  435 (591)
T ss_pred             HHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHH
Confidence            3444444444444444444566777888 66 3332233 7889999999999999987722         111122333


Q ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHH-HhhhHHhh
Q 011781          185 GVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAG-LLLAPPII  263 (477)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig-~~~~~~l~  263 (477)
                      ..+ +.++.+++....+. ..+++.-++.|++.|..++.....++|+|. ++-|+...+......+|..+- ..+.|.+.
T Consensus       436 ~~~-~~~~~lll~~~~p~-~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Y  512 (591)
T PTZ00207        436 PSV-CIITMLTLFLTLPK-AALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWY  512 (591)
T ss_pred             HHH-HHHHHHHHHHHCCc-cHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHH
Confidence            333 55555555333332 578999999999999999999999999999 888888888888888888776 56777776


Q ss_pred             ccc----------C---hhHHHHHHHHHHHHHHHHHHHhc
Q 011781          264 ENL----------G---WESVFYIFGLLGIAWFSGFKILQ  290 (477)
Q Consensus       264 ~~~----------g---~~~~~~~~~~~~~~~~~~~~~~~  290 (477)
                      |.-          |   ++.+|++.+.++++..+....+.
T Consensus       513 d~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~  552 (591)
T PTZ00207        513 TQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVH  552 (591)
T ss_pred             HHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhee
Confidence            531          2   78899999988888777665553

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.27  E-value=5.2e-06  Score=59.98  Aligned_cols=76  Identities=24%  Similarity=0.322  Sum_probs=67.5

Q ss_pred             HHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhch
Q 011781          126 CNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF  202 (477)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~  202 (477)
                      .+.+...+++.+|.+.++.++|..+.|++.+.+.+|+.+|.+...++.++.++++.+..+.+...+..+.++ ..++
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma-~~~~   79 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMA-LTHS   79 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence            456788999999999999999999999999999999999999999999998888999999888888777775 4444

Note that many members are hypothetical proteins.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.23  E-value=1.1e-05  Score=82.01  Aligned_cols=161  Identities=16%  Similarity=0.046  Sum_probs=108.5

Q ss_pred             HHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHH--HHHHHH
Q 011781          133 LSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMP--GLVLSR  210 (477)
Q Consensus       133 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  210 (477)
                      ....++.....+|.+...   ................+...|++|||.....+..+..++.++.++......  ...+..
T Consensus       337 ~y~gl~~~~~~lg~~~~~---~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (521)
T KOG0255|consen  337 VYYGLSLNVSGLGGNIYL---NFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILP  413 (521)
T ss_pred             HHHhhhhhhhhcCchHHH---HHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence            333344444555544433   333333344455555688999999999999999998888888866554433  355555


Q ss_pred             HHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHH-HHHHh
Q 011781          211 VLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFS-GFKIL  289 (477)
Q Consensus       211 ~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~  289 (477)
                      .+..++.+..+.....+..|++|...|..+.+..+....+|.+++|.+...... ......+.+.+.+..+..+ ...++
T Consensus       414 ~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~l  492 (521)
T KOG0255|consen  414 LLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLL  492 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcC
Confidence            666666666777779999999999999999999999999999999999866554 2222233333444444443 44777


Q ss_pred             ccCCcCCC
Q 011781          290 QEGETSNG  297 (477)
Q Consensus       290 ~~~~~~~~  297 (477)
                      |++.....
T Consensus       493 pet~~~~l  500 (521)
T KOG0255|consen  493 PETKGKPL  500 (521)
T ss_pred             cccCCCCC
Confidence            77765544

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.22  E-value=4.2e-05  Score=76.94  Aligned_cols=181  Identities=17%  Similarity=0.149  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHhh-hhhhCCCc---chhhHHHHHHHHHHHHhhhhhhhhhhhhcChhH-HHHHHH
Q 011781          113 YKLIGTTSLAFVICNMDKVNLSVAIIPM-SHRFGWNS---SVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKV-LQTGVL  187 (477)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~---~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~  187 (477)
                      +|.+...++..++.++.......+.|.. ..-++-+.   ...++......++..++.++.|.+..+++|-|. ++++.+
T Consensus       309 ~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~  388 (599)
T PF06609_consen  309 RRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSV  388 (599)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHH
Confidence            3455555556666665555555666664 33455444   357888888899999999999999998877554 456655


Q ss_pred             HHHHHHHHHHHh-hchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcc-
Q 011781          188 IWSLATALLPLL-AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-  265 (477)
Q Consensus       188 ~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~-  265 (477)
                      ++.+++.+++.. .++....+...++.|++.+..........+-..|+++.+.+.|+..+...+|+.+|..+...+..+ 
T Consensus       389 ~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~  468 (599)
T PF06609_consen  389 LMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNK  468 (599)
T ss_pred             HHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            555443333222 344455667788999998888888877777778989999999999998888888887665443210 


Q ss_pred             -------------------------------------------------------------cChhHHHHHHHHHHHHHHH
Q 011781          266 -------------------------------------------------------------LGWESVFYIFGLLGIAWFS  284 (477)
Q Consensus       266 -------------------------------------------------------------~g~~~~~~~~~~~~~~~~~  284 (477)
                                                                                   .++|++|+....+..++++
T Consensus       469 ~~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaii  548 (599)
T PF06609_consen  469 LPKELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAII  548 (599)
T ss_pred             hhHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                         1478888888888888888


Q ss_pred             HHHHhccCC
Q 011781          285 GFKILQEGE  293 (477)
Q Consensus       285 ~~~~~~~~~  293 (477)
                      ..+++++.+
T Consensus       549 aa~fl~d~~  557 (599)
T PF06609_consen  549 AALFLGDID  557 (599)
T ss_pred             HHHHcCChH
Confidence            888886654

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.17  E-value=1.3e-05  Score=77.46  Aligned_cols=133  Identities=12%  Similarity=0.071  Sum_probs=87.4

Q ss_pred             HHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceeh
Q 011781          331 AIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVR  410 (477)
Q Consensus       331 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r  410 (477)
                      +++.++....+++...+.+++.....+++=-++++ ++..+...|...+..-.+.++.-++.+++.+|+|+-        
T Consensus       366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled-~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv--------  436 (618)
T KOG3762|consen  366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLED-LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHV--------  436 (618)
T ss_pred             HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeeehhhhhccchHHHHHHHHHHHHHhccc--------
Confidence            45667777777777888888888888888888876 677777888888888888999999999999999875        


Q ss_pred             hhhhHHhhhhhHHHHhhhcccCCCchHHHHHH-HHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          411 KICQTIAFLSPAVCMTLSSIDLGLPHWEIVGI-LTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       411 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                      +.+.........=.+.+..+  .+ +|.++-+ ++-|...+.++......+....||+-+.++.|+
T Consensus       437 ~v~~lgLa~~~~Rf~~~S~L--~n-~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l  499 (618)
T KOG3762|consen  437 NVMYLGLACNVGRFLYYSYL--QN-PWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGL  499 (618)
T ss_pred             ceeeehhhHHHHHHHHHHHh--cC-chheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHH
Confidence            22222222222223333332  23 4444434 555666555555444444444566668888775

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=98.16  E-value=0.0005  Score=66.44  Aligned_cols=278  Identities=9%  Similarity=-0.025  Sum_probs=142.6

Q ss_pred             HHHHHHHHHHhhhhHHHHhHHhhhhh--hCCCcchhhHHHHHHHHHHHHhhhhhhhhhh-----hhcChhHHHHH-HHHH
Q 011781          118 TTSLAFVICNMDKVNLSVAIIPMSHR--FGWNSSVAGLVQSSFFWGYALSQLPGGWLAK-----IFGGRKVLQTG-VLIW  189 (477)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d-----r~g~r~~~~~~-~~~~  189 (477)
                      ++.+.+++++.-.+.....+|.+.++  -+.|.++.|...-.. ..+ -.-++|.++.|     |+||||..++- ..+.
T Consensus         4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~-~Pf-SlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~   81 (544)
T PF13000_consen    4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLAS-YPF-SLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLS   81 (544)
T ss_pred             HHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeee-chh-HHHHhhhhhhhhhcccccCCcchhhhHHHHHH
Confidence            45556677776666655678887777  677777766543211 111 12345566655     79999987653 2333


Q ss_pred             HHHHHHHHHhhc---------h--------------HHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHh
Q 011781          190 SLATALLPLLAG---------F--------------MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFG  246 (477)
Q Consensus       190 ~~~~~~~~~~~~---------~--------------~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~  246 (477)
                      ++.++.++...+         +              ...+....++.-+..+.-..+.-.+.-.+..+++++.+..-...
T Consensus        82 g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtv  161 (544)
T PF13000_consen   82 GILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTV  161 (544)
T ss_pred             HHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHh
Confidence            333333221110         0              01122333344444566666777777777777888777776666


Q ss_pred             hhhhHHHHHHhhhHHhhcc----------------cChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCc----chh
Q 011781          247 GLSFGSVAGLLLAPPIIEN----------------LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPR----SNY  306 (477)
Q Consensus       247 ~~~~g~~ig~~~~~~l~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  306 (477)
                      +.++|..++-.+.-.+-+.                ..-.....+.|.+.++..+...+++++++......+.+    .+.
T Consensus       162 G~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~~~~~  241 (544)
T PF13000_consen  162 GQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPINKSDG  241 (544)
T ss_pred             HhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCccccccccccc
Confidence            6667766665544333210                11223334455555555555555544333211110000    000


Q ss_pred             hhhhhhh-hhhHH---hhccCCCC---CCHHHHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHH
Q 011781          307 INMKKSL-SASLE---EMGESLKD---VPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSI  379 (477)
Q Consensus       307 ~~~~~~~-~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~  379 (477)
                      ...+... .++.+   ..+...-+   ..+.+++|-|.+..+++..+..-.++.+.......-+.| .|++.+..+.+..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE-kG~~KE~LAl~~l  320 (544)
T PF13000_consen  242 KSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE-KGLSKEDLALLVL  320 (544)
T ss_pred             cccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH-cCCCHHHhHHHHH
Confidence            0000000 00000   00000001   123455677888888888877777777777777777766 6999988776544


Q ss_pred             HHHHHHHHHHHhhhhchhHHHhc
Q 011781          380 LPPLASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       380 ~~~~~~~~~~~~~g~l~dr~g~~  402 (477)
                      +    .+...++.|+++.|+-+.
T Consensus       321 i----~~P~qii~~~~~~Kws~g  339 (544)
T PF13000_consen  321 I----DFPFQIILPYYIGKWSAG  339 (544)
T ss_pred             H----hhhHHHHHHHHhhhhhcC
Confidence            3    344444555555555443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=98.14  E-value=0.0067  Score=58.74  Aligned_cols=278  Identities=11%  Similarity=-0.025  Sum_probs=153.1

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhC---CCcchhhHHHHHHHH-HHHHhhhhhhhhhhhhcChhHHHHHHH
Q 011781          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFG---WNSSVAGLVQSSFFW-GYALSQLPGGWLAKIFGGRKVLQTGVL  187 (477)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~  187 (477)
                      .++.++.+.+..++..+..+..-    .+.+.+.   ..+..+.++=+...+ +.++..++.+++.+++.+.+++-+...
T Consensus        25 E~~kflpl~Ll~f~I~~ny~~lR----~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~  100 (509)
T COG3202          25 ELKKFLPLALLFFCILFNYNLLR----SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILG  100 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            34444444444444444444333    3444443   346677888888777 666888999999999999998877666


Q ss_pred             HHHHHHHHHHHhhc--------h-----------H------------HHHHHHHHHHHhhccchhh-hHHHHhhhhcCCc
Q 011781          188 IWSLATALLPLLAG--------F-----------M------------PGLVLSRVLVGIGEGVSPS-AATDLIARSIPLE  235 (477)
Q Consensus       188 ~~~~~~~~~~~~~~--------~-----------~------------~~~~~~~~l~g~~~~~~~~-~~~~~i~~~~~~~  235 (477)
                      .+...++++++.-.        +           .            |...+..++.=+-.+.... .-+....|....+
T Consensus       101 ~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~  180 (509)
T COG3202         101 FFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIE  180 (509)
T ss_pred             HHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            65555555543211        0           0            1111111111121122222 4566778888889


Q ss_pred             chhhHHHHHHhhhhhHHHHHHhhhHHhhcccC----------hhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcch
Q 011781          236 ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG----------WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSN  305 (477)
Q Consensus       236 ~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (477)
                      |..|..++++.+.+++..+++.+..++..+..          .+..+.+.++..+++..+..++.+.-.+++.-..+..+
T Consensus       181 eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~~  260 (509)
T COG3202         181 EAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKK  260 (509)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHhc
Confidence            99999999999999999999999888876321          23344444444444444444443221111110000000


Q ss_pred             hhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhh---hHHHHHHHH
Q 011781          306 YINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTE---AAWVSILPP  382 (477)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~g~~~~~~~  382 (477)
                      ..+.+         ..+..-..+++.+.++|.++.+.+...+++.+...+-...-.-.++.+-.+...   .|.+....+
T Consensus       261 kk~~~---------k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tg  331 (509)
T COG3202         261 KKKKK---------KLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTG  331 (509)
T ss_pred             ccccc---------cccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHH
Confidence            00000         000000123567888999999888888888777666554444443332222222   233444455


Q ss_pred             HH-HHHHHHhhhhchhHHHhc
Q 011781          383 LA-SVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       383 ~~-~~~~~~~~g~l~dr~g~~  402 (477)
                      +. .++...+++.+.+|.|--
T Consensus       332 vv~~v~~~~~~s~~ir~~GW~  352 (509)
T COG3202         332 VVSLVVFLFPGSNLIRRVGWF  352 (509)
T ss_pred             HHHHHHHHhhhHHHHHHhhHH
Confidence            55 455566777888887643

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.08  E-value=0.00012  Score=71.99  Aligned_cols=124  Identities=21%  Similarity=0.217  Sum_probs=105.8

Q ss_pred             hhhhhhCCCcchhhHHHHHHHHHHHHhhhhhh-hhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhc
Q 011781          139 PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGG-WLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGE  217 (477)
Q Consensus       139 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g-~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  217 (477)
                      ++...++++..+.+...+.......+++++.. .+...+|.|++...|++...+.....+ +....|..+...++.++. 
T Consensus       267 yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~a-f~~~~w~~~~~~v~~~~~-  344 (463)
T KOG2816|consen  267 YLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFA-FATETWMMFAAGVVVALA-  344 (463)
T ss_pred             EEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHH-HhccchhhhHHHHHHHhh-
Confidence            35667899999999999999988888888877 677788999988899888888888875 555557777777777665 


Q ss_pred             cchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhc
Q 011781          218 GVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE  264 (477)
Q Consensus       218 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~  264 (477)
                      ....|+..+.++.+.+++++|+++++......+..+++|.+-+.+..
T Consensus       345 ~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  345 GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            67789999999999999999999999999999999999999887754

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.02  E-value=4.3e-05  Score=74.05  Aligned_cols=113  Identities=10%  Similarity=-0.043  Sum_probs=82.7

Q ss_pred             HHHhhhhhHHHHHhhCCchhh-hHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhccc
Q 011781          353 YTCLSWLPTYFSEELSLNLTE-AAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSID  431 (477)
Q Consensus       353 ~~~~~~~~~~~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~  431 (477)
                      -....+...++.+.+|++..+ .|.+...+..+..+..+++|+++||+|.|        +.+....+...+..+++... 
T Consensus        42 R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K--------~vL~l~~l~Wsl~t~L~~fa-  112 (511)
T TIGR00806        42 RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYK--------PVLVLQALSFVCVWLLLLLG-  112 (511)
T ss_pred             hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCch--------HHHHHHHHHHHHHHHHHHHH-
Confidence            344555666777789999999 99999999999999999999999999987        44444444443433333332 


Q ss_pred             CCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhhc
Q 011781          432 LGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYLE  476 (477)
Q Consensus       432 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl~  476 (477)
                       .+...+.+.-+++|.+-+... .....+..-+++++|+++.|+.
T Consensus       113 -~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~  155 (511)
T TIGR00806       113 -TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYS  155 (511)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHH
Confidence             234445566677888877777 6677777778999999998863

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.99  E-value=3.4e-05  Score=55.32  Aligned_cols=61  Identities=20%  Similarity=0.224  Sum_probs=54.7

Q ss_pred             HHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhc
Q 011781          341 MIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       341 ~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~  402 (477)
                      +-...++...+..++..++|.|+++ .|+++.++|.+.++..+..+++.+++|+++||++++
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~   65 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKR   65 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence            4455667777888899999999986 799999999999999999999999999999999887

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.88  E-value=0.0057  Score=62.05  Aligned_cols=158  Identities=20%  Similarity=0.122  Sum_probs=121.6

Q ss_pred             hHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhh-cChhHHHHHHHHHHHHHHHHHHhhch-------
Q 011781          131 VNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-GGRKVLQTGVLIWSLATALLPLLAGF-------  202 (477)
Q Consensus       131 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~-------  202 (477)
                      ......+.++..+++.+...+.-....+.-...+.++.++.++|-| ||-+++.++.++..++..++.+.+.-       
T Consensus        55 g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~  134 (571)
T KOG1237|consen   55 GLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFM  134 (571)
T ss_pred             cchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Confidence            3346677788889998888888888888888888999999999975 88888888877777765444322110       


Q ss_pred             -----------------HHHHHHHHHHHHhhccchhhhHHHHhhhhcC---Ccc---hhhHHHHHHhhhhhHHHHHHhhh
Q 011781          203 -----------------MPGLVLSRVLVGIGEGVSPSAATDLIARSIP---LEE---RSRAVSFVFGGLSFGSVAGLLLA  259 (477)
Q Consensus       203 -----------------~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~---~~~---r~~~~~~~~~~~~~g~~ig~~~~  259 (477)
                                       ...++...-+..+|.++.-|...++-+|-++   +++   +...+.++....++|..++-.+.
T Consensus       135 ~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~  214 (571)
T KOG1237|consen  135 CKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVL  214 (571)
T ss_pred             ccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHH
Confidence                             1245666677778999999999999999997   322   23678888899999999999998


Q ss_pred             HHhhcccChhHHHHHHHHHHHHHHHHHHH
Q 011781          260 PPIIENLGWESVFYIFGLLGIAWFSGFKI  288 (477)
Q Consensus       260 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  288 (477)
                      .++-+..||.+.|.+..++.++++++++.
T Consensus       215 vyiq~~~~w~lgf~i~~~~~~lai~iF~~  243 (571)
T KOG1237|consen  215 VYIQDNVGWKLGFGIPTVLNALAILIFLP  243 (571)
T ss_pred             HhhhhcccceeeccHHHHHHHHHHHHHHc
Confidence            88888899999999988877766655544

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.81  E-value=0.00017  Score=69.86  Aligned_cols=111  Identities=21%  Similarity=0.268  Sum_probs=89.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHh--hchH------HHHHHHHHHHHhhccchhhhHHHHhhhhcCCc---chhhHHHHHHhhh
Q 011781          180 KVLQTGVLIWSLATALLPLL--AGFM------PGLVLSRVLVGIGEGVSPSAATDLIARSIPLE---ERSRAVSFVFGGL  248 (477)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~  248 (477)
                      |++.++.+++.++.+++...  ....      +.++++.++.++|.|+.-|...++.+|.++++   +|.+.+.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            45677778888888774322  2222      46888899999999999999999999999765   4677888999999


Q ss_pred             hhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHHHHHhc
Q 011781          249 SFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQ  290 (477)
Q Consensus       249 ~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  290 (477)
                      ++|..++..+.+++.++.||.+.|.+.++..++..+.++.-.
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~  123 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGR  123 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999988887776665543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.79  E-value=0.0007  Score=64.76  Aligned_cols=112  Identities=18%  Similarity=0.095  Sum_probs=78.5

Q ss_pred             CcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHH--HHHHHHHH--HhhchHHHHHHHHHHHHhhccchhh
Q 011781          147 NSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIW--SLATALLP--LLAGFMPGLVLSRVLVGIGEGVSPS  222 (477)
Q Consensus       147 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~l~g~~~~~~~~  222 (477)
                      ...+..+...++.+|..++.--...    +.-|++.+.+.+-.  .+..++-.  .+.++.|.+++..+..|+..|..+.
T Consensus       279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~----~rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV  354 (402)
T PF02487_consen  279 PRDQYRWYQLLYQLGVFISRSSLPF----FRIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV  354 (402)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcceee----eehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence            3566777778888777666443222    22344444432221  11111111  1235667888889999999999999


Q ss_pred             hHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHh
Q 011781          223 AATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI  262 (477)
Q Consensus       223 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l  262 (477)
                      .....+.+..++++|..++|..+.+.++|..++.+++-.+
T Consensus       355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998887654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK03612 spermidine synthase; Provisional

Probab=97.63  E-value=0.0057  Score=61.60  Aligned_cols=156  Identities=15%  Similarity=0.139  Sum_probs=91.6

Q ss_pred             HHHhhhhHHHHhHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHH-HHHHHH-HHHHHHHHhh-
Q 011781          125 ICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQT-GVLIWS-LATALLPLLA-  200 (477)
Q Consensus       125 ~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~-~~~~~~-~~~~~~~~~~-  200 (477)
                      +.++....+-..... +..-+|.+....+.+.+++.++..+|+.+++++.++.-++...+- +..+.+ ++..++.... 
T Consensus        25 ~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~  104 (521)
T PRK03612         25 VCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFA  104 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444333 444578888899999999999999999999888744333322111 111111 1111110110 


Q ss_pred             ---chHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhh-cccChhHHHHHHH
Q 011781          201 ---GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII-ENLGWESVFYIFG  276 (477)
Q Consensus       201 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~-~~~g~~~~~~~~~  276 (477)
                         .....++...++.++..|...|....+..+... ++-++..|.......+|+++|.++.+++. ..+|-....++.+
T Consensus       105 ~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a  183 (521)
T PRK03612        105 FQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTG  183 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence               111122344456677777777777666654322 34567788899999999999999988765 4677554555544


Q ss_pred             HHHHH
Q 011781          277 LLGIA  281 (477)
Q Consensus       277 ~~~~~  281 (477)
                      .+.++
T Consensus       184 ~l~~~  188 (521)
T PRK03612        184 SLNLL  188 (521)
T ss_pred             HHHHH
Confidence            44433

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.56  E-value=0.0024  Score=61.98  Aligned_cols=140  Identities=19%  Similarity=0.079  Sum_probs=106.3

Q ss_pred             chhhHHHHHHHHHHHHhhhhhhhhhhhhcCh-------hHHHHHHHHHHHHHHHHHHh----h-----chHHHHHHHHHH
Q 011781          149 SVAGLVQSSFFWGYALSQLPGGWLAKIFGGR-------KVLQTGVLIWSLATALLPLL----A-----GFMPGLVLSRVL  212 (477)
Q Consensus       149 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r-------~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~l  212 (477)
                      ...++..+++.+..++.+++..++..+.+++       .-+.+++.+.+.+++++...    .     -+.++++...++
T Consensus       324 vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l  403 (498)
T COG3104         324 VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVL  403 (498)
T ss_pred             cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHH
Confidence            3457889999999999999988888885544       23455666666666555433    1     235778889999


Q ss_pred             HHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHH------hhcccChhHHHHHHHHHHHHHHHHH
Q 011781          213 VGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP------IIENLGWESVFYIFGLLGIAWFSGF  286 (477)
Q Consensus       213 ~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~------l~~~~g~~~~~~~~~~~~~~~~~~~  286 (477)
                      +++|+=...|...+++.+..|+.-.+..++.+......|..++..+++.      ..+.......|+..+...++..+..
T Consensus       404 ~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~  483 (498)
T COG3104         404 QSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILL  483 (498)
T ss_pred             HHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999889999999999999999988888874      3334456667777777776665554


Q ss_pred             HH
Q 011781          287 KI  288 (477)
Q Consensus       287 ~~  288 (477)
                      +.
T Consensus       484 ~~  485 (498)
T COG3104         484 LL  485 (498)
T ss_pred             HH
Confidence            43

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.53  E-value=0.00013  Score=69.41  Aligned_cols=175  Identities=12%  Similarity=-0.020  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcC-hhHHHHHHHHHHHHHHHH
Q 011781          118 TTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGG-RKVLQTGVLIWSLATALL  196 (477)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~~~~~~~~~~~  196 (477)
                      ++.+++.......+.....+......-|.+....|++..+..++.++++...|.+.||.+. |.+.++......++.+.+
T Consensus       270 il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l  349 (480)
T KOG2563|consen  270 ILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLML  349 (480)
T ss_pred             HHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            3334443444444444444444445557777889999999999999999999999999865 444444444433332222


Q ss_pred             HHh---hchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccC----hh
Q 011781          197 PLL---AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG----WE  269 (477)
Q Consensus       197 ~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g----~~  269 (477)
                      ...   ....+.++....+.|++.....|...-+-.|..-|..-+.-.|+.+...++-+++-..+-+...+..+    +.
T Consensus       350 ~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~  429 (480)
T KOG2563|consen  350 LTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTF  429 (480)
T ss_pred             HHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCc
Confidence            112   22234567777888999899999998888888766777788898888888888888888888877665    44


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccC
Q 011781          270 SVFYIFGLLGIAWFSGFKILQEG  292 (477)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~  292 (477)
                      ..-+......++.+++..+++++
T Consensus       430 ~~~i~~~~~~~l~~~lva~~r~~  452 (480)
T KOG2563|consen  430 PANIFLTVSALLGAILVAFFRPD  452 (480)
T ss_pred             cchhHhHHHHHHHHHHHhhhhhh
Confidence            33444444444444444455443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=97.52  E-value=0.015  Score=57.27  Aligned_cols=97  Identities=20%  Similarity=0.151  Sum_probs=51.0

Q ss_pred             HHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHh----h---chHHHHHHHHHHHHhhccchhhhHHHHhh
Q 011781          157 SFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL----A---GFMPGLVLSRVLVGIGEGVSPSAATDLIA  229 (477)
Q Consensus       157 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~l~g~~~~~~~~~~~~~i~  229 (477)
                      ...+...+..+..-.+..|+..|.=+..++++..+..++...+    .   ..++..++..++.|++.+.......++.+
T Consensus        53 ~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~  132 (437)
T TIGR00939        53 ASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQGSLFGLAG  132 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcccchhhcc
Confidence            3444444444555555556655333333333222222221111    1   23556677778889988888888877776


Q ss_pred             hhcCCcchhhHHHHHHhhhhhHHHHHHhh
Q 011781          230 RSIPLEERSRAVSFVFGGLSFGSVAGLLL  258 (477)
Q Consensus       230 ~~~~~~~r~~~~~~~~~~~~~g~~ig~~~  258 (477)
                      . +|++    .++.+..+.+++++++.++
T Consensus       133 ~-fp~~----~~~a~~~G~g~aGv~~s~~  156 (437)
T TIGR00939       133 V-FPST----YSSAVMSGQGLAGVLTSLA  156 (437)
T ss_pred             c-CCHH----HHHHHHhcchhHHHHHHHH
Confidence            4 5533    3455555566666555444

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=97.45  E-value=0.001  Score=59.90  Aligned_cols=136  Identities=17%  Similarity=0.113  Sum_probs=87.0

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhh
Q 011781          151 AGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIAR  230 (477)
Q Consensus       151 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~  230 (477)
                      .|.+.-.-.+...+..+.+..+.||+.--.=..+..++.+.++++. .++++.++-+.+..+..++.|..-....++-+.
T Consensus        64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lV-afs~s~~~sL~GV~~aSissGlGEiTFL~lss~  142 (409)
T KOG3880|consen   64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLV-AFSNSVPMSLLGVVFASISSGLGEITFLALSSR  142 (409)
T ss_pred             cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEE-EeccchhHHHhhhhhhhhcCCcceeehhhhhcc
Confidence            4555666666777777777888888643332333345555666666 477877888888888888877665555554433


Q ss_pred             hcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcc--cChhHHHHHHHHHHHHHHHHHHHhccC
Q 011781          231 SIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN--LGWESVFYIFGLLGIAWFSGFKILQEG  292 (477)
Q Consensus       231 ~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~  292 (477)
                       +++    ...+-++.+.+.++.+|..--..+.+.  ++.+.+.++...+-++.+..++++.+.
T Consensus       143 -Y~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~  201 (409)
T KOG3880|consen  143 -YPS----IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKS  201 (409)
T ss_pred             -CCC----ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCC
Confidence             332    234556777777777777666666653  457888888777776665555555443

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=97.44  E-value=0.018  Score=54.95  Aligned_cols=120  Identities=17%  Similarity=0.042  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHH----HhhhhhhhhhhhhcChhHHHHHHHHHH
Q 011781          115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYA----LSQLPGGWLAKIFGGRKVLQTGVLIWS  190 (477)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~----~~~~~~g~l~dr~g~r~~~~~~~~~~~  190 (477)
                      .....++..+-..+.++.+....+++.+++-.... .......+.+...    +....-.++.-|..+|-..........
T Consensus        19 v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~il   97 (406)
T KOG1479|consen   19 VYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAIL   97 (406)
T ss_pred             HHHHHHHHhcccccchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444445556777777778887776644333 2223333333333    344444444444222211111111111


Q ss_pred             HHHHHHHHh--h-----chHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcc
Q 011781          191 LATALLPLL--A-----GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEE  236 (477)
Q Consensus       191 ~~~~~~~~~--~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~  236 (477)
                      +...+....  .     ..+...++...+.+++.+..........++. |++.
T Consensus        98 ~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~y  149 (406)
T KOG1479|consen   98 FIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEY  149 (406)
T ss_pred             HHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHH
Confidence            111111111  1     1234556677778888887777777776664 4333

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=97.42  E-value=0.029  Score=51.43  Aligned_cols=100  Identities=17%  Similarity=0.149  Sum_probs=63.7

Q ss_pred             HHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCC--cc
Q 011781          159 FWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPL--EE  236 (477)
Q Consensus       159 ~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~--~~  236 (477)
                      .+..+..+++.+.+++++|-|+++.++...+......  -.-+.+..++....+.|++.+..+..--+++++.-..  +.
T Consensus        68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~--Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~  145 (390)
T KOG3097|consen   68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAA--NLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQ  145 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh--hcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHh
Confidence            3444556666668999999999999887766543222  1233456778888999999998888777776655421  22


Q ss_pred             h---------hhHHHHHHhhhhhHHHHHHhhhH
Q 011781          237 R---------SRAVSFVFGGLSFGSVAGLLLAP  260 (477)
Q Consensus       237 r---------~~~~~~~~~~~~~g~~ig~~~~~  260 (477)
                      |         .+..|.+.+....+...|..++.
T Consensus       146 ~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~iss  178 (390)
T KOG3097|consen  146 RGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISS  178 (390)
T ss_pred             hhhhccCceeeeehhHHHHHHHHHHHHHHHHHH
Confidence            3         34455555555555555544433

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=97.38  E-value=0.004  Score=55.24  Aligned_cols=97  Identities=18%  Similarity=0.194  Sum_probs=54.7

Q ss_pred             cchhhHHHHHHhhhhhHHHHHHhhhHHh---hc--ccChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCC-CCCcchhhh
Q 011781          235 EERSRAVSFVFGGLSFGSVAGLLLAPPI---IE--NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGAT-LAPRSNYIN  308 (477)
Q Consensus       235 ~~r~~~~~~~~~~~~~g~~ig~~~~~~l---~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  308 (477)
                      ++|+....+...+.++|.++.-...-..   .+  .-.|++++.+.+++.++-++++..+-.+-...... ++++++   
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~~k~~k~~---   78 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPKEKQEKEN---   78 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccccccc---
Confidence            4566666666777778877654332111   11  23599999999888877777766663321111111 100000   


Q ss_pred             hhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHH
Q 011781          309 MKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF  346 (477)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  346 (477)
                                  .....+....+.+|++..|...+...
T Consensus        79 ------------~~~~~~~s~~~~LK~K~tw~w~~~Yg  104 (267)
T PF07672_consen   79 ------------STLSKKPSYKSILKEKETWKWILIYG  104 (267)
T ss_pred             ------------ccccccchHHHHHccchHHHHHHHHH
Confidence                        01112345789999999887766543

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.20  E-value=0.0012  Score=64.59  Aligned_cols=77  Identities=17%  Similarity=0.132  Sum_probs=64.8

Q ss_pred             HHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHHH
Q 011781          210 RVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGF  286 (477)
Q Consensus       210 ~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  286 (477)
                      -++.|.+.........++-++...|++++.+.++++.....+..+||++...+....|.|+...+.+...++....+
T Consensus       395 i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~  471 (488)
T KOG2325|consen  395 IVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALW  471 (488)
T ss_pred             hheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHH
Confidence            45677777777778889999999999999999999999999999999999999999999988887776665544433

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.17  E-value=0.00067  Score=70.30  Aligned_cols=50  Identities=10%  Similarity=0.103  Sum_probs=41.0

Q ss_pred             HHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhc
Q 011781          353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       353 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~  402 (477)
                      .++....-.-++++++++..+.|++.+.+.++.+++.++.+++.||++++
T Consensus        49 ~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~   98 (633)
T TIGR00805        49 NGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRP   98 (633)
T ss_pred             HHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcc
Confidence            33333333445567999999999999999999999999999999999877

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.13  E-value=0.0024  Score=63.05  Aligned_cols=149  Identities=15%  Similarity=0.038  Sum_probs=107.2

Q ss_pred             CCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhh---------chHHHHHHHHHHHHhh
Q 011781          146 WNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA---------GFMPGLVLSRVLVGIG  216 (477)
Q Consensus       146 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~g~~  216 (477)
                      +++...|.+..+..++..++..+...+..+...|+++..+.++..+..+.-..+.         ++.+..+.--++..+.
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~  331 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI  331 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence            8888889999888889999999998888888889988887776655544321111         1112233344555666


Q ss_pred             ccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccCh--------hHHHHHHHHHHHHHHHHHHH
Q 011781          217 EGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW--------ESVFYIFGLLGIAWFSGFKI  288 (477)
Q Consensus       217 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~--------~~~~~~~~~~~~~~~~~~~~  288 (477)
                      ....+.....+++++.|+..-|..+++..+..++|..++..++..+.+.++.        .+..++..++.++.+.+..+
T Consensus       332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~l  411 (433)
T PF03092_consen  332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFL  411 (433)
T ss_pred             HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence            6666777888999999999999999999999999999999999998876652        33444555555555555556


Q ss_pred             hccCCc
Q 011781          289 LQEGET  294 (477)
Q Consensus       289 ~~~~~~  294 (477)
                      +++.++
T Consensus       412 Lp~~~~  417 (433)
T PF03092_consen  412 LPPQKR  417 (433)
T ss_pred             cCCCch
Confidence            665443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.09  E-value=0.0068  Score=59.12  Aligned_cols=128  Identities=18%  Similarity=0.067  Sum_probs=93.9

Q ss_pred             HHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHH---Hhhc------hH
Q 011781          133 LSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP---LLAG------FM  203 (477)
Q Consensus       133 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~---~~~~------~~  203 (477)
                      +...+..+....|+++..+|..-++..+..+.+.+...++.+|+|..+.-..+.....++..+..   +...      +.
T Consensus       277 f~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~  356 (432)
T PF06963_consen  277 FGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISA  356 (432)
T ss_pred             CcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHH
Confidence            45555555666699999999999999999999999999999999998887776554332222111   1112      12


Q ss_pred             HHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhH
Q 011781          204 PGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAP  260 (477)
Q Consensus       204 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~  260 (477)
                      ..++.+.++.=+|.=.+..+..-++.|..|+++||...|...+..++...+-..++-
T Consensus       357 ~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~i  413 (432)
T PF06963_consen  357 YLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTI  413 (432)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            233444444446666777888999999999999999999999999988887666543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=96.96  E-value=0.0024  Score=61.24  Aligned_cols=126  Identities=10%  Similarity=0.102  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHH
Q 011781          337 AVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTI  416 (477)
Q Consensus       337 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~  416 (477)
                      .+..+++...+...=.+.+-..++- .++.+|.++...|++...+.+..+++.+++|++.||++|+         .++.+
T Consensus        34 ~l~il~~vnlmny~Dr~~iagv~~~-v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~---------~v~~v  103 (493)
T KOG1330|consen   34 TLVILCLVNLMNYADRYTIAGVLKE-VQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRK---------RVIAV  103 (493)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHH-HHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcc---------eEEee
Confidence            3444455555544444444443333 3356899999999999999999999999999999999765         33333


Q ss_pred             hhhhhHHHHhhhcccCCCchHH-HHHHHHHHHHhhhhhhhhhhHhhhc-cCccchhhhhhh
Q 011781          417 AFLSPAVCMTLSSIDLGLPHWE-IVGILTAGLALSSFALSGLYCTHQD-ISPEYASILLYL  475 (477)
Q Consensus       417 ~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~-~~p~~~g~~~gl  475 (477)
                      +..+-.++.+...+.  ...|. ++.=.+.|.+-+...+ ....+..+ .+.++|++++|+
T Consensus       104 G~~iW~~Av~~~~fs--~~Fwq~~l~R~~vGiGeAs~~~-ia~s~IaD~f~~~~Rs~~~~i  161 (493)
T KOG1330|consen  104 GIFIWTLAVFASGFS--NHFWQVLLCRGFVGIGEASYSP-IAPSLIADSFPDDKRSRVLGI  161 (493)
T ss_pred             HHHHHHHHHHHHHHH--HHHHHHHHHHHHhccchhhhcc-cchhHhhhcCcchhhhHHHHH
Confidence            333333333333332  33444 4444667777665554 44455555 555569999875

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=96.86  E-value=0.0012  Score=53.49  Aligned_cols=88  Identities=10%  Similarity=0.052  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcccCCCchHHHHHHHHHHHHhhhhhhhhh
Q 011781          378 SILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGL  457 (477)
Q Consensus       378 ~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  457 (477)
                      .+...++..++.++.+++.||+|+|        +...... ....+...+... ..+.....+..++.|.+.+.......
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~--------~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~   73 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRK--------PVLLVGL-FIFVLSTAMFAL-SSNITVLIIARFLQGFGAAFALVAGA   73 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchh--------HHHHHHH-HHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhHH
Confidence            3456778889999999999999876        3333222 222222222222 12333344455566666554444433


Q ss_pred             hHhhhccCccchhhhhhh
Q 011781          458 YCTHQDISPEYASILLYL  475 (477)
Q Consensus       458 ~~~~~~~~p~~~g~~~gl  475 (477)
                      ....+..+++++++++|+
T Consensus        74 ~~~~~~~~~~~~~~~~~~   91 (141)
T TIGR00880        74 ALIADIYPPEERGVALGL   91 (141)
T ss_pred             HHHHHHCChhhhhHHHHH
Confidence            444444566778888775

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=96.83  E-value=0.0067  Score=54.47  Aligned_cols=113  Identities=17%  Similarity=0.124  Sum_probs=65.9

Q ss_pred             HHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcc-
Q 011781          352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSI-  430 (477)
Q Consensus       352 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~-  430 (477)
                      .+.+..|-|. +++.+|++..+...+.....++..+| ++.|.+.|++|.+        . .+.++.+...++..+... 
T Consensus        18 ~Y~Fs~yS~~-Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~--------~-~l~iG~~~~~~GY~~~~l~   86 (250)
T PF06813_consen   18 TYTFSAYSPQ-LKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPW--------V-VLLIGAVLGFVGYGLLWLA   86 (250)
T ss_pred             ccchhhhhHH-HHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchH--------H-HHHHHHHHHHHHHHHHHHH
Confidence            3444445554 45679999999999988888988775 8889999999876        3 333333333333332221 


Q ss_pred             -cC---CCchHHHHHHHHHHHHhhhhh-hhhhhHhhhccCccchhhhhhhc
Q 011781          431 -DL---GLPHWEIVGILTAGLALSSFA-LSGLYCTHQDISPEYASILLYLE  476 (477)
Q Consensus       431 -~~---~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~p~~~g~~~gl~  476 (477)
                       ..   ..+.|.......++....+.. ........ +..|++||++.|+.
T Consensus        87 ~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~-~NFP~~RG~vvgil  136 (250)
T PF06813_consen   87 VSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCV-RNFPRSRGTVVGIL  136 (250)
T ss_pred             HhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHH-HhCccccCceehhh
Confidence             11   123444433333333333332 33333333 44478999999874

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.76  E-value=0.00034  Score=70.61  Aligned_cols=153  Identities=21%  Similarity=0.241  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHh-hhhhhCCCcchhhHHHHHHHH-HHHHhhhhhhhhhhhhcC--hhHHHHHHHH
Q 011781          113 YKLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFW-GYALSQLPGGWLAKIFGG--RKVLQTGVLI  188 (477)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g~--r~~~~~~~~~  188 (477)
                      ++.+....++..........+..+.|- +..+|+.++.+++++.++..+ +.++|.+++|.+..|+..  |..+....+.
T Consensus       304 Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~  383 (539)
T PF03137_consen  304 NPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVV  383 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHH
Confidence            345556666666677777777778776 667899999999999887666 556888999999999754  3333333222


Q ss_pred             HHHHHHH---HHHh-h----------c---------------------------------------hHHHHHHHHHHHHh
Q 011781          189 WSLATAL---LPLL-A----------G---------------------------------------FMPGLVLSRVLVGI  215 (477)
Q Consensus       189 ~~~~~~~---~~~~-~----------~---------------------------------------~~~~~~~~~~l~g~  215 (477)
                      ..+..++   ..+. .          +                                       .+..+++..++.-+
T Consensus       384 ~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~  463 (539)
T PF03137_consen  384 SIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSF  463 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHH
Confidence            2222211   0000 0          0                                       01123334444444


Q ss_pred             hccchhhhHHHHhhhhcCCcchhhHHHHHHhhhh-hHHHHHHhhhHHhhcc
Q 011781          216 GEGVSPSAATDLIARSIPLEERSRAVSFVFGGLS-FGSVAGLLLAPPIIEN  265 (477)
Q Consensus       216 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~g~~ig~~~~~~l~~~  265 (477)
                      ..+.........+-+.+++++|+.++|+...... +|.+-||++.|.++|.
T Consensus       464 ~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  464 FTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             ---------------------------------------------------
T ss_pred             HHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            4455555556666788899999999999877665 7889999999999886

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.73  E-value=0.062  Score=52.62  Aligned_cols=143  Identities=17%  Similarity=0.168  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHhhhhHHHHhHHh---hhhhhCCCcch-hhHHHHHHHHHHHHhhhhhhhhhh---hhcChhHHHHHHHHHH
Q 011781          118 TTSLAFVICNMDKVNLSVAIIP---MSHRFGWNSSV-AGLVQSSFFWGYALSQLPGGWLAK---IFGGRKVLQTGVLIWS  190 (477)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~d---r~g~r~~~~~~~~~~~  190 (477)
                      .+....+..++..+.+....|.   +....+.+... .+...-...++..++..+.+.+.+   ++|+++.+.++..+..
T Consensus       244 ~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~  323 (461)
T KOG3098|consen  244 LLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHL  323 (461)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHH
Confidence            3444444555555555555555   22233433332 233333444555555566666665   4788998888877766


Q ss_pred             HHHHHHHHhh-----------------chHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHH
Q 011781          191 LATALLPLLA-----------------GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSV  253 (477)
Q Consensus       191 ~~~~~~~~~~-----------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~  253 (477)
                      ++.++.....                 ++.....+..++.|++-+......+.++...+ +++|..+.++...-..++..
T Consensus       324 ~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~  402 (461)
T KOG3098|consen  324 IGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASC  402 (461)
T ss_pred             HHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHH
Confidence            6665542211                 12346778889999999999999999999999 48899999998888888877


Q ss_pred             HHHhhhHH
Q 011781          254 AGLLLAPP  261 (477)
Q Consensus       254 ig~~~~~~  261 (477)
                      ++-.....
T Consensus       403 v~~f~~~~  410 (461)
T KOG3098|consen  403 VAFFFSPY  410 (461)
T ss_pred             HHhhhhhh
Confidence            76555443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.62  E-value=0.02  Score=56.36  Aligned_cols=107  Identities=17%  Similarity=0.005  Sum_probs=70.6

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhcCh--hHHHHHHHHHHH--HHHHHHHhh---------chHHHHHHHHHHHHhhcc
Q 011781          152 GLVQSSFFWGYALSQLPGGWLAKIFGGR--KVLQTGVLIWSL--ATALLPLLA---------GFMPGLVLSRVLVGIGEG  218 (477)
Q Consensus       152 g~~~~~~~~~~~~~~~~~g~l~dr~g~r--~~~~~~~~~~~~--~~~~~~~~~---------~~~~~~~~~~~l~g~~~~  218 (477)
                      -.+..++.++-.+|..+..+..= -++|  ++++.+ ++-.+  -.++++...         ++-+..++..++.|+..|
T Consensus       310 ~i~~~~fNvgD~vGR~~~~~~~~-p~~~~~~l~i~s-~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG  387 (437)
T TIGR00939       310 IICFLLFNLFDWLGRSLTSKFMW-PDEDSRWLPILS-FLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG  387 (437)
T ss_pred             HHHHHHHHHHHHHHhhhhheeEe-eCCCccchHHHH-HHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence            45666778888888775544311 1222  333322 22211  111221111         233567778999999999


Q ss_pred             chhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhH
Q 011781          219 VSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAP  260 (477)
Q Consensus       219 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~  260 (477)
                      ......+.+..+..++++|..+-.+...+..+|..+|..++-
T Consensus       388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~  429 (437)
T TIGR00939       388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF  429 (437)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999888888888888887654

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=96.57  E-value=0.00095  Score=58.53  Aligned_cols=65  Identities=11%  Similarity=0.040  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhh---------hhhhhcChhHH
Q 011781          118 TTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGW---------LAKIFGGRKVL  182 (477)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~---------l~dr~g~r~~~  182 (477)
                      ...++.+.+-...+.+..++-.+.++.|.++.....++.+..+.-.+..++.|.         -.||+|||+.+
T Consensus        21 ~yGvGHmlNDitAScWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~w   94 (412)
T KOG4830|consen   21 AYGVGHMLNDITASCWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMSW   94 (412)
T ss_pred             eechhHHHhhHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceeee
Confidence            345566677777777777777888889999999889998999998888888763         45689998764

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.53  E-value=0.0084  Score=61.47  Aligned_cols=152  Identities=17%  Similarity=0.193  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHh-hhhhhCCCcchhhHHHHHHHHH-HHHhhhhhhhhhhhhcC--hhHHHHHHHHH
Q 011781          114 KLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWG-YALSQLPGGWLAKIFGG--RKVLQTGVLIW  189 (477)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~-~~~~~~~~g~l~dr~g~--r~~~~~~~~~~  189 (477)
                      +++....++..+.......+..++|- +.+++|.+...+..+.+...+. .++|.+++|.+..|+..  |......++..
T Consensus       392 ~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~  471 (735)
T KOG3626|consen  392 PIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCS  471 (735)
T ss_pred             chHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHH
Confidence            34556666666777777777778777 6678999999999999766664 45788899999998754  33333333322


Q ss_pred             HHHHHH---HHHh-------------------------------------------------------------------
Q 011781          190 SLATAL---LPLL-------------------------------------------------------------------  199 (477)
Q Consensus       190 ~~~~~~---~~~~-------------------------------------------------------------------  199 (477)
                      .+..++   ..+.                                                                   
T Consensus       472 ~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~  551 (735)
T KOG3626|consen  472 VLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTS  551 (735)
T ss_pred             HHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCC
Confidence            222222   1000                                                                   


Q ss_pred             -----------hc-----h---------------HHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhh
Q 011781          200 -----------AG-----F---------------MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGL  248 (477)
Q Consensus       200 -----------~~-----~---------------~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~  248 (477)
                                 .+     +               +..+++..++..+..+...+..+.++-+.+++++|..++|+..+..
T Consensus       552 ~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~i  631 (735)
T KOG3626|consen  552 DGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLI  631 (735)
T ss_pred             CCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHH
Confidence                       00     0               0113333344444444445666667778889999999999987776


Q ss_pred             h-hHHHHHHhhhHHhhcc
Q 011781          249 S-FGSVAGLLLAPPIIEN  265 (477)
Q Consensus       249 ~-~g~~ig~~~~~~l~~~  265 (477)
                      . +|.+-+|++.|+++|.
T Consensus       632 rllg~IPsPIifG~~ID~  649 (735)
T KOG3626|consen  632 RLLGFIPSPIIFGAVIDT  649 (735)
T ss_pred             HHHhcCCchHhhhhhHhh
Confidence            5 7888999999999874

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=95.96  E-value=0.27  Score=46.20  Aligned_cols=54  Identities=19%  Similarity=0.269  Sum_probs=45.0

Q ss_pred             HhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHh
Q 011781          365 EELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMT  426 (477)
Q Consensus       365 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~  426 (477)
                      +.+|++..+++.++....+..++...+.|.++||+|||        +.++....+....++.
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk--------~~cl~~cily~~scl~  115 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRK--------KACLLFCILYSLSCLT  115 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch--------HHHHHHHHHHHHHHHH
Confidence            35899999999999999999999999999999999987        6666666666565553

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.78  E-value=0.067  Score=51.51  Aligned_cols=121  Identities=12%  Similarity=-0.032  Sum_probs=80.6

Q ss_pred             hhHHHHhHHhhhhhh---CCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHH--HHHHHHHHHHHHHhhchHH
Q 011781          130 KVNLSVAIIPMSHRF---GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTG--VLIWSLATALLPLLAGFMP  204 (477)
Q Consensus       130 ~~~~~~~~~~~~~~~---g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~--~~~~~~~~~~~~~~~~~~~  204 (477)
                      ...+..+...+-++.   +-....-|.+-++..+...++.+..|.+-.+..+..-+.++  .++.+...+++ ...+++|
T Consensus       263 y~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm-~~t~~Iw  341 (412)
T PF01770_consen  263 YYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLM-SFTGNIW  341 (412)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHH
Confidence            333334444433443   22334458888888888889999999986555554333333  22333333344 5778889


Q ss_pred             HHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhH
Q 011781          205 GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFG  251 (477)
Q Consensus       205 ~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  251 (477)
                      ..+++-++.+.......+....-++.....+.-|..+|+......+-
T Consensus       342 v~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~L  388 (412)
T PF01770_consen  342 VCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVL  388 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHH
Confidence            99999999988888888888888888888788888888776654433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=95.72  E-value=0.044  Score=39.76  Aligned_cols=51  Identities=18%  Similarity=0.326  Sum_probs=42.7

Q ss_pred             HHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHH
Q 011781          349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLI  400 (477)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g  400 (477)
                      +.+-+.+...+|...+| .++|..+.|++.+...++.++|.+...++.++..
T Consensus         5 GigRFayTplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~   55 (85)
T PF06779_consen    5 GIGRFAYTPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGALLASRLPRHSR   55 (85)
T ss_pred             hhHHHHHHhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            34556677788887765 7999999999999999999999999998887743

Note that many members are hypothetical proteins.

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=94.32  E-value=0.75  Score=43.33  Aligned_cols=166  Identities=13%  Similarity=0.028  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCC-cchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHH---
Q 011781          116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWN-SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL---  191 (477)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s-~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~---  191 (477)
                      .+.+.+++++...+.-++......++.+++-+ -...+....+-.....+..++.|...|+..|+|++...+.+--+   
T Consensus        29 ~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~  108 (503)
T KOG2601|consen   29 VIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVI  108 (503)
T ss_pred             eehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHH
Confidence            34566777888888888888888877777643 33344444445555667778888999999999988766543222   


Q ss_pred             ---HHHHHHHhhc-----hHHHHHHHHHHHHhhccchh--hhHHHH--hhhhc----CCcchh---hHHHHHHhhhhhHH
Q 011781          192 ---ATALLPLLAG-----FMPGLVLSRVLVGIGEGVSP--SAATDL--IARSI----PLEERS---RAVSFVFGGLSFGS  252 (477)
Q Consensus       192 ---~~~~~~~~~~-----~~~~~~~~~~l~g~~~~~~~--~~~~~~--i~~~~----~~~~r~---~~~~~~~~~~~~g~  252 (477)
                         +.++..+..+     +...+..+.++.-...+...  .....+  --||.    ..+.+.   +.++.....-..-.
T Consensus       109 vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn  188 (503)
T KOG2601|consen  109 VAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTN  188 (503)
T ss_pred             HHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhh
Confidence               2222222222     23344444333332211111  111111  11222    223333   34466777777888


Q ss_pred             HHHHhhhHHhhcccChhHHHHHHHHHHHH
Q 011781          253 VAGLLLAPPIIENLGWESVFYIFGLLGIA  281 (477)
Q Consensus       253 ~ig~~~~~~l~~~~g~~~~~~~~~~~~~~  281 (477)
                      .+.|.+.|.+.+..+-|..-.+.++-.++
T Consensus       189 ~Lapv~tg~Iitfvsl~~~~g~f~~w~~v  217 (503)
T KOG2601|consen  189 LLAPVITGLIITFVSLRASAGTFAAWALV  217 (503)
T ss_pred             chhhhhhcccceeechhhhhhhhHHHHHH
Confidence            99999999999888877755555555444

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=93.97  E-value=0.019  Score=53.97  Aligned_cols=107  Identities=21%  Similarity=0.161  Sum_probs=3.8

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhh-hcChhHHHHHHHHHH--HHHHHHHHh----------hchHHHHHHHHHHHHhhccc
Q 011781          153 LVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIWS--LATALLPLL----------AGFMPGLVLSRVLVGIGEGV  219 (477)
Q Consensus       153 ~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~--~~~~~~~~~----------~~~~~~~~~~~~l~g~~~~~  219 (477)
                      .+..++.++-.+|..+.++..-+ ..+|+++..+ ++-.  +..++++..          -++-+..++..++.|+..|-
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s-~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy  264 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILS-LLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY  264 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHHHHH-HHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence            35667888888888877764321 1344444332 2211  222222111          12225667788999999999


Q ss_pred             hhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhH
Q 011781          220 SPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAP  260 (477)
Q Consensus       220 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~  260 (477)
                      .....+.+..+..++++|..+-.+...+..+|..+|..++-
T Consensus       265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~  305 (309)
T PF01733_consen  265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSF  305 (309)
T ss_dssp             --HHHH-----------------------------------
T ss_pred             hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988888888888888888776653

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=93.45  E-value=1.4  Score=36.40  Aligned_cols=89  Identities=7%  Similarity=-0.148  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcccCCCchHHHHHHHHHHHHhhhhhhh
Q 011781          376 WVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALS  455 (477)
Q Consensus       376 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~  455 (477)
                      .-.++......++.++.+.+.+++|.|        +.+ +++.+.-.+......  .++.+.++....+.|++.+..+..
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~lg~K--------~sm-~lg~~~y~~y~~~~~--~~~~~~l~~~s~l~G~~~a~lW~a  109 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKLGPK--------WSM-ILGSLGYAIYIASFF--YPNSYTLYPASALLGFGAALLWTA  109 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhhH--------HHH-HHHHHHHHHHHHHHH--hhhHHHHHHHHHHHhhhhHHhhHh
Confidence            345556666777778888899999876        333 333333332222222  223445566667778877666665


Q ss_pred             hhhHhhhccCccchhhhhhh
Q 011781          456 GLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       456 ~~~~~~~~~~p~~~g~~~gl  475 (477)
                      ....+.+...++.+++-.|+
T Consensus       110 qg~ylt~~s~~~~~~~~~~i  129 (156)
T PF05978_consen  110 QGTYLTSYSTEETIGRNTGI  129 (156)
T ss_pred             hhHHHHHcCCHHHHhhHHHH
Confidence            55555555556668777664

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=93.02  E-value=0.47  Score=46.60  Aligned_cols=65  Identities=11%  Similarity=-0.004  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChh
Q 011781          205 GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWE  269 (477)
Q Consensus       205 ~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~  269 (477)
                      .+++.-++..+..-..+.+..+.-+++.+|.--|++|.+.++..++|+---..+.-++.|.+.++
T Consensus       407 lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~~  471 (544)
T PF13000_consen  407 LVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTVA  471 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhcccc
Confidence            44555566667777788889999999999999999999999999999766555555555555544

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=92.47  E-value=2.1  Score=38.60  Aligned_cols=135  Identities=16%  Similarity=0.013  Sum_probs=83.1

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhcCh--hHHHHHHHHHHHHHHHHHHhh---c---hHHHHHHHHHHHHhhccchhh
Q 011781          151 AGLVQSSFFWGYALSQLPGGWLAKIFGGR--KVLQTGVLIWSLATALLPLLA---G---FMPGLVLSRVLVGIGEGVSPS  222 (477)
Q Consensus       151 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r--~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~l~g~~~~~~~~  222 (477)
                      -|.+++.+.++.++|+-+..++..|-..|  ..+.+..++..+...+.....   +   +...-++...+.-.+.|..+|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            48899999999999999998888775544  344444444333333221111   1   122234455556667789999


Q ss_pred             hHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHH
Q 011781          223 AATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSG  285 (477)
Q Consensus       223 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~  285 (477)
                      ..+.+-.+..|++.|...+.++..-.++-.-++-..--.-....+-|..|-++.+...+..+.
T Consensus       364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~  426 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASIL  426 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHH
Confidence            999999999999999988888766554433332211000001134567777777766655443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=92.44  E-value=13  Score=37.19  Aligned_cols=77  Identities=21%  Similarity=0.178  Sum_probs=58.7

Q ss_pred             HHHHHHHHHhhccchhhhHHHHhhhhcC-CcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHH
Q 011781          206 LVLSRVLVGIGEGVSPSAATDLIARSIP-LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW  282 (477)
Q Consensus       206 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~  282 (477)
                      +.+..++.|+.........-..+.+.+| +++|...+|.++...++..++..++++.+.+.+||.....+.-++.++.
T Consensus       269 ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~lit  346 (472)
T TIGR00769       269 LALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLLT  346 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3444556667767777777777888775 4568999999999888888777777799999999998887766665553

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=92.23  E-value=0.71  Score=48.06  Aligned_cols=52  Identities=19%  Similarity=0.162  Sum_probs=43.1

Q ss_pred             HHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhc
Q 011781          351 GHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       351 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~  402 (477)
                      +++++...+..|+.+.+|++...+..++..+....-+..+++|+++|++-.+
T Consensus         2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~   53 (654)
T TIGR00926         2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGK   53 (654)
T ss_pred             ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3456677788888888999999888888888888888899999999987555

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=91.94  E-value=0.95  Score=41.53  Aligned_cols=65  Identities=22%  Similarity=0.085  Sum_probs=55.3

Q ss_pred             HhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHh
Q 011781          198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI  262 (477)
Q Consensus       198 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l  262 (477)
                      .+.++++...+..+.-|+-.|..+....--+.+-.++++|..+++.....-.+|..++.+++-.+
T Consensus       337 ~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  337 WFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            35677788888889999998999999888899888899999999999999999988887776433

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=91.77  E-value=1.2  Score=43.33  Aligned_cols=129  Identities=19%  Similarity=0.063  Sum_probs=82.0

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhh
Q 011781          152 GLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARS  231 (477)
Q Consensus       152 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~  231 (477)
                      .|-+.++.+...+.+....++.+|+|-|+.+..+...+.++..+.+ ...+.+.....+-..|+-.+......+..++.+
T Consensus       335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~g-l~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y  413 (498)
T KOG0637|consen  335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAG-LVLNTYVVLSHRSTAGILSSPLLTVPYGALALY  413 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHh-hhhhHHHHHHHHhhcceeecchhcccHHHHHHH
Confidence            4566678888889999999999999977766666565566665554 334445666666777755555444444444333


Q ss_pred             cCC-----------------------cchhhHHHHHHhhhhhHHHHHHhhhHHhhcccC-hhHHHHHHHHHHHH
Q 011781          232 IPL-----------------------EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVFYIFGLLGIA  281 (477)
Q Consensus       232 ~~~-----------------------~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g-~~~~~~~~~~~~~~  281 (477)
                      ...                       ..+|...|+.+....+..++.....|.+.+.+| -+.+-+..+..++.
T Consensus       414 ~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~  487 (498)
T KOG0637|consen  414 AILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALL  487 (498)
T ss_pred             HHhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHH
Confidence            211                       123556677888888888888888888777765 34444444444433

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=91.35  E-value=0.4  Score=45.99  Aligned_cols=109  Identities=18%  Similarity=0.057  Sum_probs=68.8

Q ss_pred             hhhHHHHH-HHHHHHHhhhhhhhhhhhhcChhHHHHHHH-HHHHHHHHHHH------hhchHHHHHHHHHHHHhhccchh
Q 011781          150 VAGLVQSS-FFWGYALSQLPGGWLAKIFGGRKVLQTGVL-IWSLATALLPL------LAGFMPGLVLSRVLVGIGEGVSP  221 (477)
Q Consensus       150 ~~g~~~~~-~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~l~g~~~~~~~  221 (477)
                      ..-+...+ +.+.-.+|.+.+.++-++- ||+..+...+ +..+-.+.++.      .-.+-+.+++...+.|+..|-..
T Consensus       283 y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlt  361 (406)
T KOG1479|consen  283 YALLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLT  361 (406)
T ss_pred             hHHHHHHHHhHHHHHhhhhhhhcccCCC-CceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHh
Confidence            33444555 7778888877766665543 3433333221 22222222111      12233677889999999999999


Q ss_pred             hhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhh
Q 011781          222 SAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA  259 (477)
Q Consensus       222 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~  259 (477)
                      ...+.+..+..+++++..+-.+.......|.+.|..++
T Consensus       362 sl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s  399 (406)
T KOG1479|consen  362 SLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS  399 (406)
T ss_pred             hheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            99999999999888877776666666666666665554

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=90.87  E-value=3.4  Score=37.09  Aligned_cols=101  Identities=14%  Similarity=0.140  Sum_probs=51.5

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhh-hcChhHHH----HHHHHHHHHHHHHHHhh-c---hHHHHHHHHHHHHhhccchhh
Q 011781          152 GLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQ----TGVLIWSLATALLPLLA-G---FMPGLVLSRVLVGIGEGVSPS  222 (477)
Q Consensus       152 g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~----~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~l~g~~~~~~~~  222 (477)
                      ....-++..+..+|.+..|++... +.||+.+.    .+.+++.+..++..... +   ....+++..++.|++.=+..+
T Consensus       144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~  223 (267)
T PF07672_consen  144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG  223 (267)
T ss_pred             HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence            445556777777888888888764 45555443    22333333332211111 1   244577777888877655554


Q ss_pred             hHHHHhhhh--cCCcchhhHHHHHHhhhhhHH
Q 011781          223 AATDLIARS--IPLEERSRAVSFVFGGLSFGS  252 (477)
Q Consensus       223 ~~~~~i~~~--~~~~~r~~~~~~~~~~~~~g~  252 (477)
                      +...+-.|.  .+|++-|..+|+.-..+.+..
T Consensus       224 ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~y  255 (267)
T PF07672_consen  224 VILNLPHEYKGYNPKKIGIQFGLIWGFGYIFY  255 (267)
T ss_pred             HHhcChhhhcCCCcceehhHHHHHHHHHHHHH
Confidence            444333332  134444555554443333333

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=90.33  E-value=16  Score=34.40  Aligned_cols=164  Identities=17%  Similarity=0.148  Sum_probs=94.4

Q ss_pred             HHHHhhhhHHHHhHHhhhhh-hCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHH----HHHHH---HHHHHHHH
Q 011781          124 VICNMDKVNLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVL----QTGVL---IWSLATAL  195 (477)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~----~~~~~---~~~~~~~~  195 (477)
                      +.+..+.-.+-..+..+... +|-+..+.+.+.+.+...+.+|+...-++.|.--.-+.+    .++++   -..+..+.
T Consensus        17 f~~aa~GlvyElal~tLatyLlG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~   96 (508)
T COG4262          17 FVCAACGLVYELALGTLATYLLGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLL   96 (508)
T ss_pred             HHHHHhHHHHHHHHHHHHHHhcCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            33444444444454444444 466778889999999999999998888777642222111    11111   11111112


Q ss_pred             HHHh-hchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhh-cccChhHHHH
Q 011781          196 LPLL-AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII-ENLGWESVFY  273 (477)
Q Consensus       196 ~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~-~~~g~~~~~~  273 (477)
                      ++.. .++-+.+++.-++.|.-.|.-.|..+.++....  .+.....+.....-.+|+..|.++-.++. ...|.--.-.
T Consensus        97 FA~~~~~~~~Vly~lt~vIG~LVG~EiPL~mrml~~r~--a~~k~~~s~vl~~DYLGal~~gLl~p~lllP~LGl~rta~  174 (508)
T COG4262          97 FALESAPSRLVLYALTAVIGVLVGAEIPLLMRMLQRRQ--AKAKDLGSRVLTLDYLGALAGGLLWPFLLLPRLGLVRTAA  174 (508)
T ss_pred             HHhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH--HHHHhhhhhhhhhHhhhhhhHHHHHHHHHhhhhccHHHHH
Confidence            2111 124467788889999988999999998888733  12222333344447788887777766554 4456444445


Q ss_pred             HHHHHHHHHHHHHHHh
Q 011781          274 IFGLLGIAWFSGFKIL  289 (477)
Q Consensus       274 ~~~~~~~~~~~~~~~~  289 (477)
                      ..|++.++..+...++
T Consensus       175 laG~~Nl~aAvv~~fl  190 (508)
T COG4262         175 LAGLCNLAAAVVTLFL  190 (508)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5566666655444333

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=89.70  E-value=4.3  Score=37.10  Aligned_cols=51  Identities=18%  Similarity=0.012  Sum_probs=36.6

Q ss_pred             HHHHHhhhhhHHHHHhhCCch--hhhHHHHHHHHHHHHHHHHhhhhchhHHHhc
Q 011781          351 GHYTCLSWLPTYFSEELSLNL--TEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       351 ~~~~~~~~~~~~~~~~~g~~~--~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~  402 (477)
                      .........+.+..+ .+.+.  ...++......+...++.++.|++.||+|+|
T Consensus        17 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~   69 (338)
T COG0477          17 DLGLLSPALPLLLST-LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRR   69 (338)
T ss_pred             hcchHHHHHHHHHHH-cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccch
Confidence            334444555666654 44444  4678888888999999989999999999765

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=89.64  E-value=19  Score=37.12  Aligned_cols=31  Identities=19%  Similarity=0.144  Sum_probs=18.6

Q ss_pred             CchhhhHHHHHHHHHHHHHHHHhhhhchhHH
Q 011781          369 LNLTEAAWVSILPPLASVLVTSIAAQFADNL  399 (477)
Q Consensus       369 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~  399 (477)
                      -++...+..+..++++..+--++.+....|+
T Consensus       322 g~~~~g~~~l~~~gLG~~~Plll~~~~~~~~  352 (571)
T PRK00293        322 GDLLLGGLTLYLLALGMGLPLILITTFGNKL  352 (571)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3455556667777777755555555555444

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=87.76  E-value=15  Score=33.08  Aligned_cols=18  Identities=11%  Similarity=-0.040  Sum_probs=8.4

Q ss_pred             HHHHHHHhhhhhHHHHHh
Q 011781          349 SWGHYTCLSWLPTYFSEE  366 (477)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~  366 (477)
                      ....++....=..|++++
T Consensus       191 aGvlyGs~fvPv~Yi~~~  208 (254)
T PF07857_consen  191 AGVLYGSNFVPVIYIQDH  208 (254)
T ss_pred             HHHHHhcccchHHHHHhC
Confidence            334444444444556554

The region concerned is approximately 280 residues long.

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=87.30  E-value=11  Score=35.54  Aligned_cols=132  Identities=17%  Similarity=0.099  Sum_probs=84.2

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhcChh--HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhh
Q 011781          152 GLVQSSFFWGYALSQLPGGWLAKIFGGRK--VLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIA  229 (477)
Q Consensus       152 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~  229 (477)
                      |..-++..+..+++.+..|.+--+..|..  .+.++.+..+...+++ .-++++|..+++.++...-.....+.....++
T Consensus       274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m-~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA  352 (433)
T KOG3810|consen  274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIM-AQTQHIWVCYAGYVLFRVIYQLTITIATFQIA  352 (433)
T ss_pred             CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhh-hcccceehhhhhHHHHHhhHhhhhhHHHHHHH
Confidence            55666777777888888888876666553  3333433433333333 46677888888888888888888888888888


Q ss_pred             hhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccC-----------hhHHHHHHHHHHHHHHHHHH
Q 011781          230 RSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-----------WESVFYIFGLLGIAWFSGFK  287 (477)
Q Consensus       230 ~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g-----------~~~~~~~~~~~~~~~~~~~~  287 (477)
                      .....+.-|..+|+.....-+-..   ++.-...|..|           +..-|.+.+++.++......
T Consensus       353 ~nL~~e~~gLvFGiNTFvAl~lQs---ilT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~  418 (433)
T KOG3810|consen  353 RNLSSELFGLVFGINTFVALILQS---ILTLIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEY  418 (433)
T ss_pred             HhhhhhhheeeeehHHHHHHHHHH---hheEEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHH
Confidence            888888888888887665443333   23323334221           33456666666666544433

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=84.37  E-value=0.33  Score=45.64  Aligned_cols=42  Identities=19%  Similarity=0.321  Sum_probs=2.4

Q ss_pred             CchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccc---hhhhhhh
Q 011781          434 LPHWEIVGILTAGLALSSFALSGLYCTHQDISPEY---ASILLYL  475 (477)
Q Consensus       434 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~---~g~~~gl  475 (477)
                      +..+.++..+++|+..|...........+.+.|++   .|..+++
T Consensus       247 ~d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~  291 (309)
T PF01733_consen  247 SDAWFIILMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSF  291 (309)
T ss_dssp             --------------------HHHH---------------------
T ss_pred             chHHHHHHHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHH
Confidence            44555566677777766666655655666666554   4444443

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=82.08  E-value=3  Score=39.72  Aligned_cols=143  Identities=10%  Similarity=-0.159  Sum_probs=85.5

Q ss_pred             hhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhh------cChhHHHHHHHHHHHHH-HHHHHhhc
Q 011781          129 DKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF------GGRKVLQTGVLIWSLAT-ALLPLLAG  201 (477)
Q Consensus       129 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~------g~r~~~~~~~~~~~~~~-~~~~~~~~  201 (477)
                      +...-....+.-.-|.|++..+.+++.....-..++++...|++....      -|+..+-+......... .....+..
T Consensus       280 gf~a~da~t~LkLle~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~  359 (510)
T KOG3574|consen  280 GFQAADALTSLKLLEHGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGH  359 (510)
T ss_pred             HhhhhhhccchHHHHcCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhccccc
Confidence            333344445556678899999888877544444555555556555421      11211222111111111 11111111


Q ss_pred             -------hHH-HHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHH
Q 011781          202 -------FMP-GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (477)
Q Consensus       202 -------~~~-~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~  271 (477)
                             .+. ..+....+.+...-..+...++..+++.+|.--|+.|.+.+...++|+---..+..++.+.++|.-+
T Consensus       360 ~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv~~C  437 (510)
T KOG3574|consen  360 SDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLTVKQC  437 (510)
T ss_pred             CCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCceeec
Confidence                   111 2233345555555566778888999999999999999999999999988888888888888777643

>PRK03612 spermidine synthase; Provisional

Probab=81.74  E-value=64  Score=32.85  Aligned_cols=32  Identities=13%  Similarity=-0.142  Sum_probs=25.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhhhc-hhHHHhc
Q 011781          371 LTEAAWVSILPPLASVLVTSIAAQF-ADNLIAT  402 (477)
Q Consensus       371 ~~~~g~~~~~~~~~~~~~~~~~g~l-~dr~g~~  402 (477)
                      ....|.+++...+++++|.++.+++ ...+|-.
T Consensus       144 g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~  176 (521)
T PRK03612        144 GHNVATVLAADYLGALVGGLAFPFLLLPRLGLI  176 (521)
T ss_pred             hhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchH
Confidence            3567889999999999999999865 4477754

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=81.34  E-value=64  Score=32.53  Aligned_cols=78  Identities=14%  Similarity=0.166  Sum_probs=56.0

Q ss_pred             HHHHHHHHHhhccchhhhHHHHhhhhcC-CcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHH
Q 011781          206 LVLSRVLVGIGEGVSPSAATDLIARSIP-LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWF  283 (477)
Q Consensus       206 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~  283 (477)
                      +.+..+..|+.........-..+.+.+| ++++...+|-++...++-.++-.++++.+.+.+||+..-.+.=++.++..
T Consensus       285 Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit~  363 (491)
T PF03219_consen  285 IALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILITG  363 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Confidence            3344455666666666667777777775 45577888888888888777777889999999999988777544444433

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length

Probab=80.20  E-value=40  Score=29.44  Aligned_cols=40  Identities=15%  Similarity=0.223  Sum_probs=24.6

Q ss_pred             hhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHH
Q 011781          238 SRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLL  278 (477)
Q Consensus       238 ~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~  278 (477)
                      .+.-........++.++|..+++.+.+..+.. .+++.+++
T Consensus       161 ~~~~~~~~~~~i~~f~~Ga~~ga~l~~~~~~~-al~~~~~~  200 (209)
T PF06912_consen  161 ALRRALRYLLIILSFFIGAILGALLYRRLGFW-ALLLPALL  200 (209)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHH
Confidence            33445556666677777777788887777754 44444333

The function of this family is unknown although a few members are thought to be membrane proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	477
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	3e-50
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	1e-09
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	4e-09
2cfq_A	417	Lactose permease; transport, transport mechanism,	2e-05
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	3e-05

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score =  176 bits (449), Expect = 3e-50
 Identities = 56/364 (15%), Positives = 122/364 (33%), Gaps = 16/364 (4%)

Query: 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGW 171
           R+++       +    + + N ++A+ P     G++    G   S     Y  S+   G 
Sbjct: 26  RWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSRGDLGFALSGISIAYGFSKFIMGS 84

Query: 172 LAKIFGGRKVLQTGVLIWSLATALLPLLAGF---MPGLVLSRVLVGIGEGVSPSAATDLI 228
           ++     R  L  G+++ +     +  +      +  + +   L G  +G+        +
Sbjct: 85  VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 144

Query: 229 ARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-GWESVFYIFGLLGIAW-FSGF 286
                 +ER   VS      + G     LL    +     W +  Y+     I      F
Sbjct: 145 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 204

Query: 287 KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF 346
            ++++   S G                  + +E+  + K +  + +  +K +W +  A+ 
Sbjct: 205 AMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQEL--TAKQIFMQYVLPNKLLWYIAIANV 262

Query: 347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET 406
                 Y  L W PTY  E     L +++W   L   A +  T +    +D +       
Sbjct: 263 FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA 322

Query: 407 TMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTH-QDIS 465
           T V  +            +       G P  +++ ++  G  +  +    L   H  +++
Sbjct: 323 TGVFFMTLVTIAT-----IVYWMNPAGNPTVDMICMIVIGFLI--YGPVMLIGLHALELA 375

Query: 466 PEYA 469
           P+ A
Sbjct: 376 PKKA 379

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 46/267 (17%), Positives = 87/267 (32%), Gaps = 43/267 (16%)

Query: 140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL 199
           M+            V  ++   Y +SQL  G ++   G R V+  G+ I+ LAT +  + 
Sbjct: 26  MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA-VT 84

Query: 200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSI-----PLEERSRAVSFVFGGLSFGSVA 254
              +  L+ +  + G+G     +    ++AR++        +   A S +  G+      
Sbjct: 85  TSSLTVLIAASAMQGMG-----TGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSP-- 137

Query: 255 GLLLAPPI----IENLGWESVFYIFGLLGIA-WFSGFKILQEGETSNGATLAPRSNYINM 309
             LLAP I         W + +    +L     FS  + + E       T    +    +
Sbjct: 138 --LLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPE-------TRPVDAPRTRL 188

Query: 310 KKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSL 369
             S                +K +F +      +     G  G     +         L L
Sbjct: 189 LTS----------------YKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGL 232

Query: 370 NLTEAAWVSILPPLASVLVTSIAAQFA 396
           +    + + ILP  A+      A +  
Sbjct: 233 SSMTVSILFILPIPAAFFGAWFAGRPN 259

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 57.6 bits (139), Expect = 4e-09
 Identities = 44/260 (16%), Positives = 87/260 (33%), Gaps = 13/260 (5%)

Query: 133 LSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA 192
             + +      F   +  AGL+QS+F++GY +  +P G L K    +  + TG+ +++L 
Sbjct: 45  NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG 104

Query: 193 TALLPLLAGFM---PGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLS 249
            A L   A  +      ++   ++  G G   +AA   +    P       ++      S
Sbjct: 105 -AALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS 163

Query: 250 FGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSN--------GATLA 301
           FG++  ++    +I +        +   +     S +K                    +A
Sbjct: 164 FGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVA 223

Query: 302 PRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPT 361
                       S +  +  +         + R +     + A FC       C S+L  
Sbjct: 224 LLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIR 283

Query: 362 YFSEEL-SLNLTEAAWVSIL 380
           Y  EE+  +    AA     
Sbjct: 284 YAVEEIPGMTAGFAANYLTG 303

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 15/113 (13%), Positives = 34/113 (30%), Gaps = 2/113 (1%)

Query: 170 GWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIA 229
             +    GG+  L     I S+              +V+ + L               I 
Sbjct: 280 PLIINRIGGKNALLLAGTIMSVRIIGSSFATSA-LEVVILKTLHMFEVPFLLVGCFKYIT 338

Query: 230 RSIPLEERSRAVSFVFG-GLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIA 281
               +   +      F        +   +LA  + E++G++  + + GL+ + 
Sbjct: 339 SQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALG 391

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 4/150 (2%)

Query: 144 FGWNSSVAGLVQSSFFWGYALSQLPGGWLA-KIFGGRKVLQTGVLIWSLATALLPLLAGF 202
                + A  + + +     LS   GG++A +I G R  +  G ++  L   +L L  G 
Sbjct: 49  LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFG- 107

Query: 203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSR--AVSFVFGGLSFGSVAGLLLAP 260
              L  S +L+ IG G      + L+       +R R    S    G++ G+    L+  
Sbjct: 108 ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVG 167

Query: 261 PIIENLGWESVFYIFGLLGIAWFSGFKILQ 290
              E  G+   F +  +        +    
Sbjct: 168 AAQEAAGYHVAFSLAAIGMFIGLLVYYFGG 197

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	477
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.97
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.96
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.95
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.92
2xut_A	524	Proton/peptide symporter family protein; transport	99.91
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.64
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.5
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.5
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.33
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.28
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.14
2xut_A	524	Proton/peptide symporter family protein; transport	98.82

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=1.8e-33  Score=278.69  Aligned_cols=353  Identities=13%  Similarity=0.150  Sum_probs=266.9

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHH
Q 011781          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (477)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (477)
                      +++.+..+++..+...+....+.+.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||+++.++.++.++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~  104 (451)
T 1pw4_A           26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA  104 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHH
Confidence            456677777888888888899999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh----hchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccC
Q 011781          192 ATALLPLL----AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG  267 (477)
Q Consensus       192 ~~~~~~~~----~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g  267 (477)
                      +.++++ +    +++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++++.+..|
T Consensus       105 ~~~~~~-~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  183 (451)
T 1pw4_A          105 VMLFMG-FVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN  183 (451)
T ss_dssp             HHHHHH-HCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred             HHHHHH-hhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            888875 5    67788999999999999999999999999999999999999999999999999999999999888898


Q ss_pred             -hhHHHHHHHHHHHHHHHHH-HHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHH
Q 011781          268 -WESVFYIFGLLGIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAH  345 (477)
Q Consensus       268 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  345 (477)
                       ||+.|++.+++.++..++. +++++++........++.+.. .... ....++.+...++..++..+++|.++...+..
T Consensus       184 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (451)
T 1pw4_A          184 DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND-YPDD-YNEKAEQELTAKQIFMQYVLPNKLLWYIAIAN  261 (451)
T ss_dssp             CSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC---------------CCTHHHHHHTSSCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhccc-cccc-chhhhhcccccccchHHHHHcCHHHHHHHHHH
Confidence             9999999998887765544 445544333221111110000 0000 00000001111111146778899999999999


Q ss_pred             HHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHH--HhcCcccceehhhhhHHhhhhhHH
Q 011781          346 FCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL--IATGVETTMVRKICQTIAFLSPAV  423 (477)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--g~~~~~~~~~r~~~~~~~~~~~~~  423 (477)
                      ++.......+..++|.|+++.+|++..+.+++.+...++.+++.++.+++.||+  ++|        +.......+...+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~--------~~~~~~~~~~~~~  333 (451)
T 1pw4_A          262 VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR--------GATGVFFMTLVTI  333 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH--------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--------hhHHHHHHHHHHH
Confidence            999999999999999999987899999999999999999999999999999998  765        4443333333323


Q ss_pred             HHhhhcccCC-CchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhhc
Q 011781          424 CMTLSSIDLG-LPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYLE  476 (477)
Q Consensus       424 ~~~l~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl~  476 (477)
                      ++.+...... +.....+..++.|.+.+...........+..+++++|+++|+.
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  387 (451)
T 1pw4_A          334 ATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFT  387 (451)
T ss_dssp             HHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHH
T ss_pred             HHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHH
Confidence            3333333222 3334445555666665555544444455556667799998863

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=3.6e-32  Score=268.40  Aligned_cols=334  Identities=14%  Similarity=0.143  Sum_probs=260.1

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHH
Q 011781          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (477)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (477)
                      ++..+..+++..+...+......+..|.+.+++|++..+.|++.+++.++..++.+++|+++||+|||++++++.++.++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~  103 (438)
T 3o7q_A           24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL  103 (438)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHH
Confidence            34566677777788888888999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHH--HhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhh-cccC-
Q 011781          192 ATALLP--LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII-ENLG-  267 (477)
Q Consensus       192 ~~~~~~--~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~-~~~g-  267 (477)
                      +.+++.  ..+++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+. +..+ 
T Consensus       104 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~  183 (438)
T 3o7q_A          104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPH  183 (438)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCC
T ss_pred             HHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            887762  245778999999999999999999999999999999999999999999999999999999999998 5554 


Q ss_pred             ------------------------hhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccC
Q 011781          268 ------------------------WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGES  323 (477)
Q Consensus       268 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (477)
                                              ||+.|++.+++.++..+..++.+.++.+++.+.+++++                  
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~------------------  245 (438)
T 3o7q_A          184 QSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQG------------------  245 (438)
T ss_dssp             CCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTT------------------
T ss_pred             ccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccc------------------
Confidence                                    99999888877776666555543333222111111100                  


Q ss_pred             CCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHH-HHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhc
Q 011781          324 LKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTY-FSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (477)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~  402 (477)
                      ....++++++++|.++...+..++..........++|.| +++.+|++..+++.+.+...++.++++++.+++.||+++|
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~  325 (438)
T 3o7q_A          246 SFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH  325 (438)
T ss_dssp             SHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred             chhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            001235688899999999999888888889999999999 8887899999999999999999999999999999999876


Q ss_pred             CcccceehhhhhHHhhhhhHHHHhhhcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          403 GVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       403 ~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                              +...... ++..+..++....  ...+..+.+++++++.+... +.......+..|++++++.++
T Consensus       326 --------~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  386 (438)
T 3o7q_A          326 --------KVLAAYA-LIAMALCLISAFA--GGHVGLIALTLCSAFMSIQY-PTIFSLGIKNLGQDTKYGSSF  386 (438)
T ss_dssp             --------HHHHHHH-HHHHHHHHHHHHC--CHHHHHHHHHHHHHHHTTHH-HHHHHHHHSSCGGGHHHHHHH
T ss_pred             --------HHHHHHH-HHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHH-HHHHHHHHhhccccccchhhH
Confidence                    3433333 3333333333332  23344455566676655555 445555444444557776664

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.97  E-value=2.8e-31  Score=256.60  Aligned_cols=327  Identities=16%  Similarity=0.121  Sum_probs=254.4

Q ss_pred             HHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHH
Q 011781          117 GTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL  196 (477)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  196 (477)
                      ..+++..+........+.+.+|.+.+++|.+..+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   82 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA   82 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence            34566677788888999999999999999999999999999999999999999999999999999999999998888887


Q ss_pred             HHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHHHHHH
Q 011781          197 PLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFG  276 (477)
Q Consensus       197 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~  276 (477)
                      . ..++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|.+++|.+++++.+..|||+.|++.+
T Consensus        83 ~-~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~  161 (375)
T 2gfp_A           83 V-TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLL  161 (375)
T ss_dssp             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred             H-HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHH
Confidence            5 567789999999999999999999999999999999999999999999999999999999999999899999999988


Q ss_pred             HHHHHHHH-HHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHH
Q 011781          277 LLGIAWFS-GFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC  355 (477)
Q Consensus       277 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  355 (477)
                      ++.++..+ ..+.++|+++.++++                       +....++++++++|.++...+..++.......+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (375)
T 2gfp_A          162 VLCAGVTFSMARWMPETRPVDAPR-----------------------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAF  218 (375)
T ss_dssp             HHHHHHHCCCCCSSCCCSTTTCCC-----------------------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcccCCCCccc-----------------------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence            87776655 333334332221110                       011223568889999999999999988899999


Q ss_pred             hhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcccCCCc
Q 011781          356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLP  435 (477)
Q Consensus       356 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~  435 (477)
                      ..+.|.|+++.+|.++.+.+.+.+...++.+++.++.+++.||++++        ..............+..........
T Consensus       219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  290 (375)
T 2gfp_A          219 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--------MWQSVICCLLAGLLMWIPDWFGVMN  290 (375)
T ss_dssp             HHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--------HHHHHHHHHHTSSSSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhhcccc
Confidence            99999999988899999999999999999999999999999998753        1111111011111111111100112


Q ss_pred             hH-HHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhhc
Q 011781          436 HW-EIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYLE  476 (477)
Q Consensus       436 ~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl~  476 (477)
                      .+ ..+..++.+.+.+... +.......+..|+++|+++|+.
T Consensus       291 ~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~p~~~g~~~g~~  331 (375)
T 2gfp_A          291 VWTLLVPAALFFFGAGMLF-PLATSGAMEPFPFLAGTAGALV  331 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHTS-STTHHHHHTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhh-HHHHHHHHHhCCcccchHHHHH
Confidence            23 3344555666555444 5555556666568899998863

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.96  E-value=2e-27  Score=238.03  Aligned_cols=355  Identities=15%  Similarity=0.096  Sum_probs=235.7

Q ss_pred             HHHHHHHHHHHhhhhHHHHhHH-hhhhh-----hCCCcchhhHHHHHHHHHHHHhhhhhhhhhhh-hcChhHHHHHHHHH
Q 011781          117 GTTSLAFVICNMDKVNLSVAII-PMSHR-----FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIW  189 (477)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~  189 (477)
                      ..++...+............++ ++.++     +|.+..+.+++.+++.++..++++++|+++|| +|||+++..+.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~   95 (491)
T 4aps_A           16 STLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLI   95 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            3444444444445444444444 45555     99999999999999999999999999999999 89999999999999


Q ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcc--hhhHHHHHHhhhhhHHHHHHhhhHHhhcccC
Q 011781          190 SLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEE--RSRAVSFVFGGLSFGSVAGLLLAPPIIENLG  267 (477)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g  267 (477)
                      +++.+++. .+++++.+++.|++.|++.+...+...+++.|++|+++  |+.++++++...++|.+++|.+++.+.+..|
T Consensus        96 ~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g  174 (491)
T 4aps_A           96 MLGHIVLA-LPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG  174 (491)
T ss_dssp             HHHHHHHH-SCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHH-HhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            88888774 67778999999999999999999999999999999988  7778888999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhccCCcCCC-CCCCCcchhhhhhhhhhh----------------hHH------------
Q 011781          268 WESVFYIFGLLGIAWFSGFKILQEGETSNG-ATLAPRSNYINMKKSLSA----------------SLE------------  318 (477)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------------~~~------------  318 (477)
                      ||+.|++.++..++..+...+..++..++. ....+..+..+.++..+.                ..+            
T Consensus       175 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (491)
T 4aps_A          175 YHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLT  254 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhh
Confidence            999999988777766555544422221111 111111000000000000                000            


Q ss_pred             -----------hhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHH
Q 011781          319 -----------EMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVL  387 (477)
Q Consensus       319 -----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~  387 (477)
                                 ....+..........+....+...+..++....+.....++|.|..+..+.+....+.+.....++.++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (491)
T 4aps_A          255 IVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIML  334 (491)
T ss_dssp             HHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHH
Confidence                       000000000001111223345555566666667777788899999887888877788888999999999


Q ss_pred             HHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhcc--------cCCCchHHHHHHHHHHHHhhhhhhhhhhH
Q 011781          388 VTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSI--------DLGLPHWEIVGILTAGLALSSFALSGLYC  459 (477)
Q Consensus       388 ~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  459 (477)
                      +..+.+++.||+++|+..    +...+..+..+.+++..+...        ...+..+..+..++.+.+.+.........
T Consensus       335 ~~~~~~~l~~r~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  410 (491)
T 4aps_A          335 YTPFFAWLWTAWKKNQPS----SPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSV  410 (491)
T ss_dssp             HHHHHHHHHHHTTTC-------CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred             HHHHHHHHHHHHhccCCC----chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            999999999999987321    111222333333333332222        11233445555666666655555555554


Q ss_pred             hhhccCccchhhhhhhc
Q 011781          460 THQDISPEYASILLYLE  476 (477)
Q Consensus       460 ~~~~~~p~~~g~~~gl~  476 (477)
                      ..+..+++++|+++|+.
T Consensus       411 ~~~~~p~~~~g~~~g~~  427 (491)
T 4aps_A          411 TTKLAPKAFNSQMMSMW  427 (491)
T ss_dssp             HHHHTTTTCSSSSTHHH
T ss_pred             HHHhCCHHHHHHHHHHH
Confidence            55556667799988863

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.95  E-value=7.9e-27  Score=233.69  Aligned_cols=350  Identities=17%  Similarity=0.162  Sum_probs=230.2

Q ss_pred             HHHHHHHHHHhhhhHHHHhHHhhhhhhCC--------CcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHH
Q 011781          118 TTSLAFVICNMDKVNLSVAIIPMSHRFGW--------NSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIW  189 (477)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  189 (477)
                      ...++.++.+++...++..+|.+.++++.        +..+.|++.+++.+|..+|++++|+++||+|||+++.++.+++
T Consensus        16 ~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~   95 (491)
T 4gc0_A           16 VATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLF   95 (491)
T ss_dssp             HHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            34456677778888888888888877743        2356789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-----------------hhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHH
Q 011781          190 SLATALLPL-----------------LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGS  252 (477)
Q Consensus       190 ~~~~~~~~~-----------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~  252 (477)
                      .++.++.++                 .+++++.++++|+++|++.|...+....+++|+.|+++|++..++.+.+..+|.
T Consensus        96 ~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~  175 (491)
T 4gc0_A           96 FISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQ  175 (491)
T ss_dssp             HHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhh
Confidence            998887753                 467889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhHHhhcc--------cChhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhh--hhh-------h
Q 011781          253 VAGLLLAPPIIEN--------LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKK--SLS-------A  315 (477)
Q Consensus       253 ~ig~~~~~~l~~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------~  315 (477)
                      ++++.++..+...        .+||+.+.+..+..++..+..++.+|.++....+.+.++.....++  ...       +
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~  255 (491)
T 4gc0_A          176 LLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQE  255 (491)
T ss_dssp             HHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHH
Confidence            9999888776543        3477777777777777777777777765432221111111111000  000       0


Q ss_pred             hHHhhccCCCCCCHHHHhhcHHHHHHHHHH-HHhHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhh
Q 011781          316 SLEEMGESLKDVPWKAIFRSKAVWAMIYAH-FCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQ  394 (477)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~  394 (477)
                      ..+..++..+........+.+......... +........+..+.+.+.+ ..+.+...........++..+++.++.++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (491)
T 4gc0_A          256 IKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFK-TLGASTDIALLQTIIVGVINLTFTVLAIM  334 (491)
T ss_dssp             HHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHH-hcCCCccchhhHHHHHHHHHHHHHHHHHH
Confidence            000011111111222333344444433333 3333444555566666664 46888777777788888999999999999


Q ss_pred             chhHHHhcCcccceehhhhhHHhhhhhHHHHh--hhcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCc-cchhh
Q 011781          395 FADNLIATGVETTMVRKICQTIAFLSPAVCMT--LSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISP-EYASI  471 (477)
Q Consensus       395 l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p-~~~g~  471 (477)
                      +.||+|+|        +.............+.  ............++.+++...++.....+..+.+..++.| +.|++
T Consensus       335 l~dr~Grr--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~  406 (491)
T 4gc0_A          335 TVDKFGRK--------PLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGK  406 (491)
T ss_dssp             HHHHHCSH--------HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHH
T ss_pred             HHHhhcCc--------chhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHH
Confidence            99999987        3222222222221111  1112222222223333333334344444556666666655 55999


Q ss_pred             hhhhc
Q 011781          472 LLYLE  476 (477)
Q Consensus       472 ~~gl~  476 (477)
                      ++|++
T Consensus       407 ~~g~~  411 (491)
T 4gc0_A          407 ALAIA  411 (491)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88864

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.92  E-value=1.6e-24  Score=212.23  Aligned_cols=332  Identities=11%  Similarity=0.002  Sum_probs=200.7

Q ss_pred             HHHHHHHHHhhhhHHHHhHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHH
Q 011781          119 TSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP  197 (477)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  197 (477)
                      +....+........+.+++|. +.+++|.++.+.|++.+++.++..++++++|+++||+|||+++.++..+.+++...+.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~   91 (417)
T 2cfq_A           12 FGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFF   91 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            333444555555666667776 4566999999999999999999999999999999999999999988776544221110


Q ss_pred             --HhhchH-HHHHHHHHHHHhhccchhhhHHHHhhhhcCC--cchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhHHH
Q 011781          198 --LLAGFM-PGLVLSRVLVGIGEGVSPSAATDLIARSIPL--EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF  272 (477)
Q Consensus       198 --~~~~~~-~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~~~  272 (477)
                        ...... ..++..+++.|++.+...+.....+.++.++  ++++...+.......+|..++|.+++++.+ .+|++.|
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f  170 (417)
T 2cfq_A           92 IFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVF  170 (417)
T ss_dssp             HHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHH
Confidence              111111 1123445555555554444444444444332  356777888888999999999999999886 5899999


Q ss_pred             HHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHHhHHHH
Q 011781          273 YIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH  352 (477)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  352 (477)
                      ++.++..++..+..++.++++++..+..+++++              .+++....++++++++|.++...+..+.....+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (417)
T 2cfq_A          171 WLGSGCALILAVLLFFAKTDAPSSATVANAVGA--------------NHSAFSLKLALELFRQPKLWFLSLYVIGVSCTY  236 (417)
T ss_dssp             TTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSS--------------CCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCccccccccccccccc--------------ccccccHHHHHHHhcCCchhhHHHHHHHHHHHH
Confidence            887666544443333333322111100000000              000000112456788999888777666555566


Q ss_pred             HHHhhhhhHHHHHhhCC---chhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhhhc
Q 011781          353 YTCLSWLPTYFSEELSL---NLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSS  429 (477)
Q Consensus       353 ~~~~~~~~~~~~~~~g~---~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l~~  429 (477)
                      ..+..++|.|+.+.++.   +....+...+...++.+++.++.++++||+|+|        +.+.. +.+..++.+.+..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~--------~~l~~-~~~~~~~~~~~~~  307 (417)
T 2cfq_A          237 DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK--------NALLL-AGTIMSVRIIGSS  307 (417)
T ss_dssp             HHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH--------HHHHH-HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH--------HHHHH-HHHHHHHHHHHHH
Confidence            66667788888765542   244557777788888899999999999999877        33332 3333333333332


Q ss_pred             ccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          430 IDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       430 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                      .. ++....++..++.+.+.............+..+++.+|++.|+
T Consensus       308 ~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~  352 (417)
T 2cfq_A          308 FA-TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLV  352 (417)
T ss_dssp             TC-CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             Hh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            22 2333333333334444333333333334444566669988775

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.91  E-value=4e-23  Score=208.54  Aligned_cols=170  Identities=21%  Similarity=0.264  Sum_probs=143.4

Q ss_pred             HHHHHHHHHhhhhHHHHhHHh-hhhhhC------CCcchhhHHHHHHHHHHHHhhhhhhhhhhhh-cChhHHHHHHHHHH
Q 011781          119 TSLAFVICNMDKVNLSVAIIP-MSHRFG------WNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-GGRKVLQTGVLIWS  190 (477)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~  190 (477)
                      +.+..++...........++. +.+++|      .+..+.|++.+++.++..++.+++|+++||+ |||+++.++.++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~   96 (524)
T 2xut_A           17 IIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYC   96 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            334444444455445455444 667889      9999999999999999999999999999999 99999999999988


Q ss_pred             HHHHHHHHhhc-hHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHH---HHhhhhhHHHHHHhhhHHhhccc
Q 011781          191 LATALLPLLAG-FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSF---VFGGLSFGSVAGLLLAPPIIENL  266 (477)
Q Consensus       191 ~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~ig~~~~~~l~~~~  266 (477)
                      ++.+++. .++ +++.+++.|++.|++.+...+...+++.|++|+++|+++.+.   .+.+.++|.+++|.+++.+.+..
T Consensus        97 ~~~~~~~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  175 (524)
T 2xut_A           97 VGHAFLA-IFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF  175 (524)
T ss_dssp             HHHHHHH-HTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS
T ss_pred             HHHHHHH-HhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            8888775 555 778899999999999999999999999999999999876666   89999999999999999999989


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHh
Q 011781          267 GWESVFYIFGLLGIAWFSGFKIL  289 (477)
Q Consensus       267 g~~~~~~~~~~~~~~~~~~~~~~  289 (477)
                      ||++.|++.+++.++..+..++.
T Consensus       176 g~~~~f~~~~~~~~~~~~~~~~~  198 (524)
T 2xut_A          176 GAAVAFGIPGVLMFVATVFFWLG  198 (524)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999888877665555443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.64  E-value=1.8e-15  Score=149.18  Aligned_cols=175  Identities=13%  Similarity=0.040  Sum_probs=144.0

Q ss_pred             HHHHHHHHHHHHhhhhHHHHhHHhhhhh-hCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhh--cChhHHHHHHHHHH-H
Q 011781          116 IGTTSLAFVICNMDKVNLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF--GGRKVLQTGVLIWS-L  191 (477)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~~~~~~~~~-~  191 (477)
                      +..+.+..++.......+..+.|.+.++ +|.+..+.+++.+...++.+++.++.|++.||+  |+|+.+..+..+.. +
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  333 (451)
T 1pw4_A          254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI  333 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence            3344445555556666677777776665 899999999999999999999999999999999  99999888776665 5


Q ss_pred             HHHHHHHhh-chHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhh-HHHHHHhhhHHhhcccChh
Q 011781          192 ATALLPLLA-GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF-GSVAGLLLAPPIIENLGWE  269 (477)
Q Consensus       192 ~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~ig~~~~~~l~~~~g~~  269 (477)
                      +.+++.... .+.+.+.+..++.|++.+...+....++.+.+|+++|++++|+.+....+ |..++|.+.|.+.+..||+
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~  413 (451)
T 1pw4_A          334 ATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWD  413 (451)
T ss_dssp             HHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSH
T ss_pred             HHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence            554443222 25567778888999998888899999999999999999999999999999 9999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc
Q 011781          270 SVFYIFGLLGIAWFSGFKILQ  290 (477)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~  290 (477)
                      ..|++.+++.++..+..+++.
T Consensus       414 ~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          414 GGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999998888877766665553

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.50  E-value=2.2e-13  Score=133.68  Aligned_cols=161  Identities=16%  Similarity=0.096  Sum_probs=127.0

Q ss_pred             HHHHHHHhhhhHHHHhHHhh-hhh-hCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHH
Q 011781          121 LAFVICNMDKVNLSVAIIPM-SHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL  198 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~-~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  198 (477)
                      +..++..........+.|.+ .++ +|.+..+.++..++..++..++.++.|+++||+|||+.+..+.++..++.+++. 
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~-  343 (438)
T 3o7q_A          265 LAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISA-  343 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH-
Confidence            33344444455555565655 544 599999999999999999999999999999999999999999888877776664 


Q ss_pred             hhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccC-hhHHHHHHHH
Q 011781          199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVFYIFGL  277 (477)
Q Consensus       199 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g-~~~~~~~~~~  277 (477)
                      ..++.+. ++..++.|++.+...+...++..+.+|++ ++.+.++.. ...+|..++|.+.|.+.+..| ++..|++.++
T Consensus       344 ~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~  420 (438)
T 3o7q_A          344 FAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPAL  420 (438)
T ss_dssp             HCCHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHH
T ss_pred             HcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            4555443 44458889999999999999999999855 888888877 667999999999999999998 9999988765


Q ss_pred             HHHHHHHH
Q 011781          278 LGIAWFSG  285 (477)
Q Consensus       278 ~~~~~~~~  285 (477)
                      +.++..+.
T Consensus       421 ~~~~~~~~  428 (438)
T 3o7q_A          421 CFAVIFIF  428 (438)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55444433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.50  E-value=2.6e-13  Score=132.39  Aligned_cols=141  Identities=13%  Similarity=0.065  Sum_probs=116.6

Q ss_pred             cchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhccchhhhHHHH
Q 011781          148 SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDL  227 (477)
Q Consensus       148 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  227 (477)
                      ....++..++..++.+++.++.|+++||+|||+++..+.++.+++.++.. ..++.+.+++..++.+++.+...+....+
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  336 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS-FATSALEVVILKTLHMFEVPFLLVGCFKY  336 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT-TCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567888888888899999999999999999999888887777665553 44555667777777888777777778899


Q ss_pred             hhhhcCCcchhhHHHH-HHhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHHHHHh
Q 011781          228 IARSIPLEERSRAVSF-VFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL  289 (477)
Q Consensus       228 i~~~~~~~~r~~~~~~-~~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  289 (477)
                      +.|.+|++.|+++.++ ++....+|.+++|.++|++.+..|++..|.+.+++.++..+..+..
T Consensus       337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  399 (417)
T 2cfq_A          337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT  399 (417)
T ss_dssp             HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999 5888899999999999999998899999998888877766655443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.33  E-value=6.2e-12  Score=125.34  Aligned_cols=166  Identities=19%  Similarity=0.077  Sum_probs=125.0

Q ss_pred             HHHhhhhHHHHhHHhh-hhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHH-----HHHHHHHHHHHHHHH
Q 011781          125 ICNMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQ-----TGVLIWSLATALLPL  198 (477)
Q Consensus       125 ~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-----~~~~~~~~~~~~~~~  198 (477)
                      ............++.+ .+.++.+..+.++..+...++..++.++.|++.||+|||+...     .+.++.+++.+++..
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~  373 (491)
T 4aps_A          294 LFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAI  373 (491)
T ss_dssp             HHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHH
T ss_pred             HHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHH
Confidence            3333344444445554 4446777678889999999999999999999999999986544     666666666655543


Q ss_pred             hh--------chHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhH
Q 011781          199 LA--------GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES  270 (477)
Q Consensus       199 ~~--------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~  270 (477)
                      ..        .+.+.+++..++.|++.+...+....++.+.+|+++|++++|+.+....+|..++|.+.+.+.+. ++.+
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~  452 (491)
T 4aps_A          374 PGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVA  452 (491)
T ss_dssp             HHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTH
T ss_pred             HHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHH
Confidence            21        24566778889999999998999999999999999999999999999999999999999988754 6777


Q ss_pred             HHHHHHHHHHHHHHHHHHhcc
Q 011781          271 VFYIFGLLGIAWFSGFKILQE  291 (477)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~  291 (477)
                      .|++.+++.++..+..+++.+
T Consensus       453 ~~~~~~~~~~~~~~~~~~~~~  473 (491)
T 4aps_A          453 YFSYFGLGSVVLGIVLVFLSK  473 (491)
T ss_dssp             HHHHTHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            888888777776665555433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.28  E-value=1.4e-10  Score=115.58  Aligned_cols=182  Identities=12%  Similarity=0.002  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHH
Q 011781          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (477)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (477)
                      +.........+....+...+..+.+.+.+..+.+.........+..+...++.++.+++.||+|||+.++.+....+++.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~  356 (491)
T 4gc0_A          277 VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGM  356 (491)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHH
Confidence            44444555555566666777777888888889888888888888888999999999999999999999998887777666


Q ss_pred             HHHHHhh---chHHHHHHHHHH-HHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhc-----
Q 011781          194 ALLPLLA---GFMPGLVLSRVL-VGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-----  264 (477)
Q Consensus       194 ~~~~~~~---~~~~~~~~~~~l-~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~-----  264 (477)
                      +.++...   ...+..++..++ .+.......+..+.+.+|.+|.+.|++++|+......++.++++.+.+.+.+     
T Consensus       357 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~  436 (491)
T 4gc0_A          357 FSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLV  436 (491)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHH
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5543221   111222222222 2222233457778899999999999999999999999999999988776653     


Q ss_pred             -ccChhHHHHHHHHHHHHHHHH-HHHhccCCcC
Q 011781          265 -NLGWESVFYIFGLLGIAWFSG-FKILQEGETS  295 (477)
Q Consensus       265 -~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  295 (477)
                       ..++.+.|++.++++++..+. ++++||++.+
T Consensus       437 ~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~  469 (491)
T 4gc0_A          437 AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGK  469 (491)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence             345667888888877776554 4566776544

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.14  E-value=4.2e-11  Score=114.84  Aligned_cols=158  Identities=13%  Similarity=-0.037  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHhhhhHHHHhHHhhhhh-hCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHH-HHHHH
Q 011781          116 IGTTSLAFVICNMDKVNLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLI-WSLAT  193 (477)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~-~~~~~  193 (477)
                      +....+..++.......+....|.+.++ +|.++.+.+++.+...++..++.++.+++.||++++.  ..+..+ ...+.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~  278 (375)
T 2gfp_A          201 FNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGL  278 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence            3344444455555666666777775554 8999999999999999999999999999999998732  222222 22222


Q ss_pred             H--HHHHh-hchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcccChhH
Q 011781          194 A--LLPLL-AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES  270 (477)
Q Consensus       194 ~--~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~g~~~  270 (477)
                      .  ..... .++.+.+++..++.|++.+...+....++.+..| ++|+++.|+.+....+|..++|.+.+.+.+..+|+.
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~  357 (375)
T 2gfp_A          279 LMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSL  357 (375)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHH
T ss_pred             HHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccH
Confidence            2  11111 2355667778889999999999999999999998 899999999999999999999999999988878887


Q ss_pred             HHHHHH
Q 011781          271 VFYIFG  276 (477)
Q Consensus       271 ~~~~~~  276 (477)
                      .+++.+
T Consensus       358 ~~~~~~  363 (375)
T 2gfp_A          358 GLLMTL  363 (375)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777643

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.82  E-value=9.3e-09  Score=103.19  Aligned_cols=140  Identities=14%  Similarity=0.097  Sum_probs=98.9

Q ss_pred             hhhHHHHHHHHHHHHhhhhhhhhh----hhhcC----hhHHHHHHHHHHHHHHHHHHhh--------chHHHHHHHHHHH
Q 011781          150 VAGLVQSSFFWGYALSQLPGGWLA----KIFGG----RKVLQTGVLIWSLATALLPLLA--------GFMPGLVLSRVLV  213 (477)
Q Consensus       150 ~~g~~~~~~~~~~~~~~~~~g~l~----dr~g~----r~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~  213 (477)
                      ..+++.....++..++.++.+++.    +|.|+    ++.+.++.++.+++.+++....        .+.+.+++..++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  415 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL  415 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            456666666667777777777764    55543    3456667777777666554321        3456677888999


Q ss_pred             HhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhccc--Ch---------hHHHHHHHHHHHHH
Q 011781          214 GIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL--GW---------ESVFYIFGLLGIAW  282 (477)
Q Consensus       214 g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~--g~---------~~~~~~~~~~~~~~  282 (477)
                      |++.+...+....++.+..|+++|++++|+.+....+|.++||.+.+.+.+..  +|         +..|++.+++.++.
T Consensus       416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (524)
T 2xut_A          416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA  495 (524)
T ss_dssp             HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988742  23         33366666666665


Q ss_pred             HHHHHHh
Q 011781          283 FSGFKIL  289 (477)
Q Consensus       283 ~~~~~~~  289 (477)
                      .++.+++
T Consensus       496 ~~~~~~~  502 (524)
T 2xut_A          496 AIVFALY  502 (524)
T ss_dssp             HHHHC--
T ss_pred             HHHHHHH
Confidence            5554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	477
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	5e-24
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	7e-06
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	7e-07
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	4e-06

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score =  102 bits (253), Expect = 5e-24
 Identities = 53/347 (15%), Positives = 106/347 (30%), Gaps = 4/347 (1%)

Query: 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGW 171
           R+++       +    + + N ++A+ P     G++    G   S     Y  S+   G 
Sbjct: 23  RWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSRGDLGFALSGISIAYGFSKFIMGS 81

Query: 172 LAKIFGGRKVLQTGVLIWSLATA---LLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLI 228
           ++     R  L  G+++ +        +P     +  + +   L G  +G+        +
Sbjct: 82  VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 141

Query: 229 ARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKI 288
                 +ER   VS      + G     LL    +                    + F  
Sbjct: 142 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 201

Query: 289 LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCG 348
               +T     L P   Y N          E   + K +  + +  +K +W +  A+   
Sbjct: 202 AMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFV 261

Query: 349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTM 408
               Y  L W PTY  E     L +++W   L   A +  T +    +D +       T 
Sbjct: 262 YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG 321

Query: 409 VRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALS 455
           V  +                +  + +    ++G L  G  +     +
Sbjct: 322 VFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHA 368

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 45.8 bits (107), Expect = 7e-06
 Identities = 25/200 (12%), Positives = 51/200 (25%), Gaps = 5/200 (2%)

Query: 87  ESGQVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGW 146
                    E    +     + +     L         +  +    L  +   +     +
Sbjct: 223 YPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHF 282

Query: 147 NSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPG- 205
               +      + +      L  GW++          TGV   +L T    +      G 
Sbjct: 283 ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGN 342

Query: 206 ---LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFV-FGGLSFGSVAGLLLAPP 261
               ++  +++G                  P +    A  F    G   GSVA   +   
Sbjct: 343 PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 402

Query: 262 IIENLGWESVFYIFGLLGIA 281
            ++  GW+  F +     I 
Sbjct: 403 TVDFFGWDGGFMVMIGGSIL 422

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 49.0 bits (115), Expect = 7e-07
 Identities = 26/237 (10%), Positives = 53/237 (22%), Gaps = 11/237 (4%)

Query: 133 LSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA 192
                I +      + S  G++ ++      L Q   G L+   G RK L   +    + 
Sbjct: 27  FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVM 86

Query: 193 TALLPLLAGFMPGLVLSRVLV-----GIGEGVSPSAATDLIARSIPLEERSRAVSFVFGG 247
            A   +            V        +G   +  A              +         
Sbjct: 87  FAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMF 146

Query: 248 LSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYI 307
              G   G  +   +         +   G   I     F    +  +S            
Sbjct: 147 GCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSS------ATVANA 200

Query: 308 NMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFS 364
                 + SL+   E  +      +       +  Y  F   + ++    +      
Sbjct: 201 VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQG 257

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 46.7 bits (109), Expect = 4e-06
 Identities = 22/195 (11%), Positives = 50/195 (25%), Gaps = 2/195 (1%)

Query: 90  QVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSS 149
            V                  P+ + L           ++     +             + 
Sbjct: 200 AVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTR 259

Query: 150 VAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLS 209
           V G V +      A        +    GG+  L     I S+           +  ++L 
Sbjct: 260 VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVIL- 318

Query: 210 RVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFG-GLSFGSVAGLLLAPPIIENLGW 268
           + L               I     +   +      F        +   +LA  + E++G+
Sbjct: 319 KTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF 378

Query: 269 ESVFYIFGLLGIAWF 283
           +  + + GL+ + + 
Sbjct: 379 QGAYLVLGLVALGFT 393

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	477
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.89
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.58
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.55

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2e-32  Score=268.19  Aligned_cols=356  Identities=13%  Similarity=0.147  Sum_probs=259.6

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHH
Q 011781          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (477)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (477)
                      +|.++..++++++..+++...++...|.+. ++|+|.+++|++.+++.+++.++++++|+++||+|||+++.++.++.++
T Consensus        23 ~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~  101 (447)
T d1pw4a_          23 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA  101 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence            466666677777777788788888888775 5899999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHhh---chHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhhHHHHHHhhhHHhhcc-cC
Q 011781          192 ATALLPLLA---GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-LG  267 (477)
Q Consensus       192 ~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~-~g  267 (477)
                      +.++++...   ++++.+++.|++.|++.+...+....++.+++|+++|++++++.+.+..+|.+++|.+++.+... .+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~  181 (447)
T d1pw4a_         102 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFND  181 (447)
T ss_dssp             HHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCC
T ss_pred             HHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhc
Confidence            887765432   45678999999999999999999999999999999999999999999999999999999887765 47


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHHHH
Q 011781          268 WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFC  347 (477)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  347 (477)
                      ||+.|++.+++.++..++.+.+.+++++.......++......+. .....+.+...++...+..++++.++......++
T Consensus       182 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (447)
T d1pw4a_         182 WHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDD-YNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVF  260 (447)
T ss_dssp             STTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC--------------CCTHHHHHHTSSCHHHHHHHHHHHH
T ss_pred             ccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccc-hhhccccccchhhHHHHHHHcCchHHHHHHHhhh
Confidence            999999998888777666665554443332222111111000000 0011111122222335677889999999999999


Q ss_pred             hHHHHHHHhhhhhHHHHHhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhHHHHhh
Q 011781          348 GSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTL  427 (477)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~~~~~l  427 (477)
                      ..........+.|.|+.+.++.+..+.+.......++.+++.++.|++.||+++++      +.............+..+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  334 (447)
T d1pw4a_         261 VYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN------RGATGVFFMTLVTIATIV  334 (447)
T ss_dssp             HHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC------HHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccc------cccccchhHHHHHHHHHH
Confidence            99999999999999999989999999999999999999999999999999998762      222222222222222222


Q ss_pred             hcccCC-CchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          428 SSIDLG-LPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       428 ~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                      ...... +.....+..+++|++..+..........+..+++.+|+++|+
T Consensus       335 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~  383 (447)
T d1pw4a_         335 YWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGF  383 (447)
T ss_dssp             TTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHH
T ss_pred             HHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            222222 333344445555655444444444444445666779999886

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=5.8e-22  Score=190.19  Aligned_cols=335  Identities=12%  Similarity=-0.002  Sum_probs=204.7

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHH
Q 011781          114 KLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (477)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (477)
                      +.+..+.+..++..+....+.+++|. +.+++|+|+.++|++.+++.++..++++++|+++||+|||++++++..+..++
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~   86 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVM   86 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            44445566667777777788888886 56779999999999999999999999999999999999999999988887777


Q ss_pred             HHHHHHhhchHH----HHHHHHHHHHhhccchhhhHHHHhhhhcCC--cchhhHHHHHHhhhhhHHHHHHhhhHHhhccc
Q 011781          193 TALLPLLAGFMP----GLVLSRVLVGIGEGVSPSAATDLIARSIPL--EERSRAVSFVFGGLSFGSVAGLLLAPPIIENL  266 (477)
Q Consensus       193 ~~~~~~~~~~~~----~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~ig~~~~~~l~~~~  266 (477)
                      ..+... ..+..    ..++.+++.+.+.+...........+..++  +++.+..+........+..++|.+++.+.+. 
T Consensus        87 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-  164 (417)
T d1pv7a_          87 FAPFFI-FIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-  164 (417)
T ss_dssp             HHHHHH-HTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHH-hhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-
Confidence            666643 32222    234455555555555555544444444332  3455677788888899999999999988865 


Q ss_pred             ChhHHHHHHHHHHHHHHH-HHHHhccCCcCCCCCCCCcchhhhhhhhhhhhHHhhccCCCCCCHHHHhhcHHHHHHHHHH
Q 011781          267 GWESVFYIFGLLGIAWFS-GFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAH  345 (477)
Q Consensus       267 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  345 (477)
                      +|+..+........+..+ ..+..++.+....+..++++.               ++...........+++..+...+..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~  229 (417)
T d1pv7a_         165 NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGAN---------------HSAFSLKLALELFRQPKLWFLSLYV  229 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSC---------------CCCCCHHHHHHHTTSSHHHHHHHHH
T ss_pred             cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhh---------------cccccccccccccccccccchhhhh
Confidence            455555555554444443 333333333222211110000               0000111123344444444444443


Q ss_pred             HHhHHHHHHHhhhhhHHHH---HhhCCchhhhHHHHHHHHHHHHHHHHhhhhchhHHHhcCcccceehhhhhHHhhhhhH
Q 011781          346 FCGSWGHYTCLSWLPTYFS---EELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPA  422 (477)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~r~~~~~~~~~~~~  422 (477)
                      ..............+.+..   +..+.+....+.......++..++..+.+++.||++++        +...... +..+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~--------~~~~~~~-~~~~  300 (417)
T d1pv7a_         230 IGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK--------NALLLAG-TIMS  300 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHH--------HHHHHHH-HHHH
T ss_pred             HHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccc--------cchhhhH-HHHH
Confidence            3333333333333333332   22344556677778888889999999999999999876        3433333 3333


Q ss_pred             HHHhhhcccCCCchHHHHHHHHHHHHhhhhhhhhhhHhhhccCccchhhhhhh
Q 011781          423 VCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLYL  475 (477)
Q Consensus       423 ~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~g~~~gl  475 (477)
                      +...+... .++.....+..++.|.+.+...........+..+++++|+++|+
T Consensus       301 ~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (417)
T d1pv7a_         301 VRIIGSSF-ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLV  352 (417)
T ss_dssp             HHHHHHHT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHH
T ss_pred             Hhhhcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHH
Confidence            33333333 23444555556666777666665555555566777889998885

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=2.9e-15  Score=142.69  Aligned_cols=157  Identities=13%  Similarity=0.039  Sum_probs=133.5

Q ss_pred             HhHHhhhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 011781          135 VAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVG  214 (477)
Q Consensus       135 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  214 (477)
                      .......++.+.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++.. ..++.+.+++..++.|
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g  323 (417)
T d1pv7a_         245 NFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS-FATSALEVVILKTLHM  323 (417)
T ss_dssp             HHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHH-TCCCHHHHHHHHHHHH
T ss_pred             ccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccc-cccccchhhHHHHHHH
Confidence            333444455566677788888999999999999999999999999999999888888877774 5666788888999999


Q ss_pred             hhccchhhhHHHHhhhhcCCcchhhHHHHH-HhhhhhHHHHHHhhhHHhhcccChhHHHHHHHHHHHHHHHHHHHhccC
Q 011781          215 IGEGVSPSAATDLIARSIPLEERSRAVSFV-FGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEG  292 (477)
Q Consensus       215 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~ig~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  292 (477)
                      ++.+...+...+++.+.+|++.|+++.++. +....+|.+++|.++|++.+.+|+++.|++.+++.++..++..+..+.
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         324 FEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            999999999999999999999999999985 556779999999999999999999999999998887776666555443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=3e-14  Score=137.69  Aligned_cols=172  Identities=14%  Similarity=0.047  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHhhhhHHHHhHHh-hhhhhCCCcchhhHHHHHHHHHHHHhhhhhhhhhhhhcChhHHHHHHHHHHHHHHHH
Q 011781          118 TTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL  196 (477)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  196 (477)
                      .+....++............+. +.+.++.+..+.++..++..++..++.++.|++.||+++++..........+.....
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (447)
T d1pw4a_         253 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT  332 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHH
Confidence            3333334444444444444444 666789999999999999999999999999999999998765443333222222111


Q ss_pred             HH----hhchHHHHHHHHHHHHhhccchhhhHHHHhhhhcCCcchhhHHHHHHhhhhh-HHHHHHhhhHHhhcccChhHH
Q 011781          197 PL----LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF-GSVAGLLLAPPIIENLGWESV  271 (477)
Q Consensus       197 ~~----~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~ig~~~~~~l~~~~g~~~~  271 (477)
                      ..    ...+.+..+++.++.|++.+...+....+..|.+|++.|++++|+.+....+ |.+++|.+.|++.+.+||+..
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~  412 (447)
T d1pw4a_         333 IVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGG  412 (447)
T ss_dssp             HHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHH
T ss_pred             HHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence            11    1345566777888889988888899999999999999999999999888776 567789999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 011781          272 FYIFGLLGIAWFSGFKIL  289 (477)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~  289 (477)
                      |++.+++.++..++...+
T Consensus       413 ~~~~~~~~~~~~~~~~~~  430 (447)
T d1pw4a_         413 FMVMIGGSILAVILLIVV  430 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            998887777665555444