Citrus Sinensis ID: 011783

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------
Protein Sequence
MAAGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRHD
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHccccHHHHHccccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccccccccHHHHHHHHHHHHHHHHEEHEEcccccccccccccHHHHHHHHHHHccccHHHHHccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccHHcccccc
Coil and Loop (DISEMBL)
maageeklrepflknekryyencpgckvdqlkdtksglpitELFSIWIIVLCtalpisslfpfLYFMIKDFQIAKREedigsyagyvgssfmFGRALTSVFWGLvadrygrkpviiMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLiigpalggflaqpaekypnlfsseslfgkfpyflpclcislfafgetlhrhnddddscdvSYDALESASAevkeeegreatpkksllknwplmSSIIVYCVFSLHDMAYSEIFSLWanspkklgglnystQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVltiplltsypyIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFIlqnravdqdqrgaanGIAMTGMSLfkaagpagggaLFSWAQKrldasflpgsqMVFFVLNVVEAIGVLMtfkpflaqrhd
Flexible Loop (DISEMBL)
maageeklrepflknekRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESAsaevkeeegreatpkksllknwplMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTfkpflaqrhd
Low Complexity Region (SEG)
MAAGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTawgigliigpalggflaQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNddddscdvsydALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRHD
Disordered region (IsUnstruct)
****************KRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHR***********************************LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFL*****
Disordered Region (DISOPRED)
*****************************************ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVK**********KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK*FLA****
Disordered Region (DISEMBL)
MAAGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDAL******************KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRHD
Disordered Region (DISPRO)
*********EPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQ***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRHD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	477	2.2.26 [Sep-21-2011]
Q94BZ1	478	Protein ZINC INDUCED FACI	yes	no	0.962	0.960	0.685	0.0
Q8RWN2	486	Protein ZINC INDUCED FACI	no	no	0.976	0.958	0.652	1e-173
Q3EAQ5	484	Probable peptide/nitrate	no	no	0.939	0.925	0.588	1e-159
P25351	611	Uncharacterized membrane	yes	no	0.419	0.327	0.323	4e-26
B4EYY4	402	Multidrug resistance prot	yes	no	0.396	0.470	0.272	1e-10
A8GCZ5	411	Multidrug resistance prot	yes	no	0.396	0.459	0.267	1e-09
D8MQN9	411	Multidrug resistance prot	no	no	0.389	0.452	0.274	5e-09
P39843	400	Multidrug resistance prot	yes	no	0.649	0.775	0.263	5e-09
Q6GBD5	388	Quinolone resistance prot	yes	no	0.505	0.621	0.224	2e-08
P0A4K5	399	Multi-drug resistance eff	yes	no	0.303	0.363	0.298	3e-08

>sp|Q94BZ1|ZIFL1_ARATH Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana GN=ZIFL1 PE=2 SV=1

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/471 (68%), Positives = 379/471 (80%), Gaps = 12/471 (2%)

Query: 16  EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
           EK ++E+C GCKVDQ+K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct: 11  EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query: 76  REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
           +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct: 71  KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query: 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIGPA+GGFLAQ
Sbjct: 131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query: 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAF---------GETLHRHNDDDDSCDVSYD 246
           PA++YP+LFS +S+FGKFP+FLPCL IS+FAF          ETLH H  +DD    SYD
Sbjct: 191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDE---SYD 247

Query: 247 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 306
           AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K 
Sbjct: 248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307

Query: 307 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 366
           GGL YST  VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G L + +L+ YP IA
Sbjct: 308 GGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPLIA 367

Query: 367 MLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAG 426
            LSG  L   +  ASV K++L  S ITGLFILQN+AV QDQRGAANGIAMT MSLFKA G
Sbjct: 368 KLSGLALTVTVTSASVAKSVLGTSAITGLFILQNKAVRQDQRGAANGIAMTAMSLFKAIG 427

Query: 427 PAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRHD 477
           PA  G +FSW++KR  A+FLPG+QMVFF+LNVV A+GV++TFKPFLA+   
Sbjct: 428 PAAAGIIFSWSEKRQGAAFLPGTQMVFFILNVVLALGVVLTFKPFLAETQQ 478

Major facilitator superfamily (MFS) transporter probably involved in 2,4-dichlorophenoxyacetic acid (2,4-D) export.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWN2|ZIF1_ARATH Protein ZINC INDUCED FACILITATOR 1 OS=Arabidopsis thaliana GN=ZIF1 PE=1 SV=2

 Score =  609 bits (1570), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 313/480 (65%), Positives = 372/480 (77%), Gaps = 14/480 (2%)

Query: 6   EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
           E+ +E  L+ ++ Y++ CPGCKV+Q+K  + G P  EL  +WIIVL T+LPISSL+PFLY
Sbjct: 3   EEYKEALLE-KQNYHDGCPGCKVEQMKQLRRGYPYLELSFVWIIVLSTSLPISSLYPFLY 61

Query: 66  FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
           +MI+DF +AK E+DIG YAG+VG SFM GRALTSVFWG+VADRYGRKP+I++GT S+ IF
Sbjct: 62  YMIEDFGVAKTEKDIGFYAGFVGCSFMLGRALTSVFWGIVADRYGRKPIILLGTISIAIF 121

Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
           N LFGLS NFWMA+ TRFLLGS N LLG +KAYA EIFR+E+QA  +S VSTAWGIGLII
Sbjct: 122 NALFGLSSNFWMAIGTRFLLGSFNCLLGTMKAYASEIFRDEYQATAMSAVSTAWGIGLII 181

Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAF---------GETLHRHND 236
           GPALGGFLAQPA+KYPN+FS ESLFG+F Y LPC  IS FA           ETLH H  
Sbjct: 182 GPALGGFLAQPADKYPNVFSQESLFGRFRYALPCFTISAFALLVTVLCCFIPETLHNHKL 241

Query: 237 DDDSCDVSYDALESASAEVKEEEGR----EATPKKSLLKNWPLMSSIIVYCVFSLHDMAY 292
           D  S D SYD LE+AS E     G+    E    +SLLKNWPLMSSIIVYCV  LHD AY
Sbjct: 242 DSLSHDDSYDILEAASHESSPSTGKAGKNERKASQSLLKNWPLMSSIIVYCVLCLHDTAY 301

Query: 293 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 352
           SEIF+LWANSP+K GGL+YST  VG VLAI+G  L  FQ+ +YP  E++LGP++V R AG
Sbjct: 302 SEIFALWANSPRKYGGLSYSTNEVGTVLAISGLGLFSFQVFVYPLAEKLLGPVLVTRYAG 361

Query: 353 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAAN 412
            L IP+  SYP+IA LSG  L+ +LNCAS++ N+LSVS ITGL ILQNRAVDQ QRGAAN
Sbjct: 362 ALMIPIQMSYPFIAGLSGLSLSLMLNCASILINVLSVSAITGLLILQNRAVDQSQRGAAN 421

Query: 413 GIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFL 472
           GIAMT MSLFK  GPAG G LFSW+++RL+A+FLPGS MVFFVLNV+  +GV +TFKPFL
Sbjct: 422 GIAMTAMSLFKTVGPAGAGILFSWSERRLNAAFLPGSHMVFFVLNVIVVVGVALTFKPFL 481

Major facilitator superfamily (MFS) transporter involved in zinc tolerance by participating in vacuolar sequestration of zinc.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EAQ5|PTR36_ARATH Probable peptide/nitrate transporter At3g43790 OS=Arabidopsis thaliana GN=ZIFL2 PE=2 SV=2

 Score =  561 bits (1446), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 279/474 (58%), Positives = 358/474 (75%), Gaps = 26/474 (5%)

Query: 21  ENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDI 80
           E+CPGC +D+ K  + G+P   L  IW++ LCTALPISSLFP++YFMI+DF IAK+EEDI
Sbjct: 15  EDCPGCIIDRTKQQQRGVPYLHLSFIWLVSLCTALPISSLFPYIYFMIRDFHIAKQEEDI 74

Query: 81  GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVL 140
           G YAG+VGSSFM GRALTS+FWG +ADRYGRKP+I++GT SV+IFNTLFGLS +FW+A+ 
Sbjct: 75  GFYAGFVGSSFMIGRALTSIFWGKLADRYGRKPIILIGTFSVIIFNTLFGLSTSFWLAIS 134

Query: 141 TRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY 200
            RFLLG  N LLG I+AYA E+  EE+ AL LS VST+ GIGLI+GPA+GG+LAQPAEKY
Sbjct: 135 VRFLLGCFNCLLGVIRAYASEVVSEEYNALSLSVVSTSRGIGLILGPAIGGYLAQPAEKY 194

Query: 201 PNLFSSESLFGKFPYFLPCLCISLFA---------FGETLHRHNDDDDSCDVSYDALESA 251
           PN+FS  S+FG+FPYFLP L IS++A           ETLH        C ++   L   
Sbjct: 195 PNIFSQSSVFGRFPYFLPSLVISVYATAVLIACWWLPETLHTR------CRIAQGRLNPT 248

Query: 252 SAEVKEEEG-----REATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 306
                E  G     ++   K SLL+N PLM+ IIVYCVFSL ++AY+EIFSLWA S +  
Sbjct: 249 ELNDDESRGGGLDEQKIINKPSLLRNRPLMAIIIVYCVFSLQEIAYNEIFSLWAVSDRSY 308

Query: 307 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 366
           GGL++S+Q VGEVLAI+G  LLVFQL +YP LE+ +G + V R++ VL IPLL+ YPYIA
Sbjct: 309 GGLSFSSQDVGEVLAISGLGLLVFQLLVYPPLEKSVGLLAVIRLSAVLLIPLLSCYPYIA 368

Query: 367 MLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAG 426
           +LSG  L  ++NCAS++KN LS+S++TGLFI+ N+AV Q+QRGAANGI+MT MS+FK+ G
Sbjct: 369 LLSGVTLHLVINCASIIKNALSISLVTGLFIMLNKAVPQNQRGAANGISMTAMSVFKSFG 428

Query: 427 PAGGGALFSWAQKRLDASFLPGS------QMVFFVLNVVEAIGVLMTFKPFLAQ 474
           PAGGG LFSWAQKR DA+FLPG       +MVF VLN+V+ +G+++TF P+++Q
Sbjct: 429 PAGGGVLFSWAQKRQDATFLPGQIFAPCDEMVFLVLNLVQLVGLILTFIPYISQ 482

Arabidopsis thaliana (taxid: 3702)

>sp|P25351|YCR3_YEAST Uncharacterized membrane protein YCR023C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR023C PE=1 SV=2

 Score =  119 bits (299), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 112/207 (54%), Gaps = 7/207 (3%)

Query: 31  LKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSS 90
            K+   G P  +L  + ++     +  SSLFP++YFM++DF IA  +  +  Y+GY+ SS
Sbjct: 8   FKEQMDGFPWVQLVVVSLVRFSEPIAFSSLFPYVYFMVRDFNIAPNDAQVSKYSGYLSSS 67

Query: 91  FMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNG 150
           F   + +++  WG  ++++GRK  +  G     +   + G S NF+ A++ R L+G LNG
Sbjct: 68  FALCQVISAYHWGRFSEKHGRKITLTCGLIGTSVSLLILGFSRNFYQALVARSLMGLLNG 127

Query: 151 LLGPIKAYACEIFRE-EHQALGLSTVSTAWGIGLIIGPALGGFLA---QPAEKYPNLFS- 205
            +G I+    EI  E +HQAL  ST+   +  G ++GP +GGFL        + P  F  
Sbjct: 128 NVGVIRTIIGEIATERKHQALAFSTMPLLFQFGAVVGPMIGGFLVFRDGTMNEVPLWFPH 187

Query: 206 -SESLFGKFPYFLPCLCISLF-AFGET 230
            ++ +   +PY LP + + +F  FG T
Sbjct: 188 FAKRIIRSYPYALPNVVVCMFLMFGLT 214

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|B4EYY4|MDTG_PROMH Multidrug resistance protein MdtG OS=Proteus mirabilis (strain HI4320) GN=mdtG PE=3 SV=1

 Score = 68.6 bits (166), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 86/198 (43%), Gaps = 9/198 (4%)

Query: 42  ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSV 100
            L+ +W     T    S + PFL   +++  I K  E +  + G   S +F+F  A+ + 
Sbjct: 13  NLYIVWFGCFLTGAGFSLIMPFLPLYVEELGI-KDHESLNLWTGVAFSITFLFS-AIAAP 70

Query: 101 FWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYAC 160
           FWG ++DR GRK +++     + I   L G + N W  ++ R LLG L G +    A   
Sbjct: 71  FWGKLSDRKGRKLMLLRSALGMAIVMVLIGFAQNIWQLLILRALLGVLGGFVPNANALIA 130

Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL 220
                +     L T+ST    G +IGP +GG LA      P  F + ++         C 
Sbjct: 131 TQVPVKKSGWALGTLSTGAVSGALIGPLIGGILADLYGLRPVFFITAAV------LFICF 184

Query: 221 CISLFAFGETLHRHNDDD 238
            ++LF   E     +  D
Sbjct: 185 IVTLFFVSENFTPVSKKD 202

Proteus mirabilis (strain HI4320) (taxid: 529507)

>sp|A8GCZ5|MDTG_SERP5 Multidrug resistance protein MdtG OS=Serratia proteamaculans (strain 568) GN=mdtG PE=3 SV=1

 Score = 65.1 bits (157), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 83/198 (41%), Gaps = 9/198 (4%)

Query: 42  ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSV 100
            LF  W+    T    S + PFL   ++   +    + +  ++G V S +F+F  A+ S 
Sbjct: 13  NLFVAWLGCFLTGAAFSLIMPFLPLYVETLGVTG-HQALNMWSGLVFSITFLFS-AIASP 70

Query: 101 FWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYAC 160
           FWG +ADR GRK +++     + I   L G++ N W  +  R +LG L G +    A   
Sbjct: 71  FWGGLADRRGRKLMLLRSALGMSIVMLLMGMAQNIWQFLALRAVLGLLGGFIPNANALIA 130

Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL 220
                      L T+ST    G +IGP +GG LA      P  + +  +       L C 
Sbjct: 131 TQVPRNRSGWALGTLSTGGVSGALIGPLIGGLLADQYGLRPVFYITAGV------LLTCF 184

Query: 221 CISLFAFGETLHRHNDDD 238
            ++L    E        D
Sbjct: 185 VLTLLYVKEQFTPVQKKD 202

Serratia proteamaculans (strain 568) (taxid: 399741)

>sp|D8MQN9|MDTG_ERWBE Multidrug resistance protein MdtG OS=Erwinia billingiae (strain Eb661) GN=mdtG PE=3 SV=1

 Score = 63.2 bits (152), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 85/204 (41%), Gaps = 18/204 (8%)

Query: 42  ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSV 100
            LF  W     T +  S + PFL   ++   +      +  ++G V S +F+F  A+ S 
Sbjct: 16  NLFVAWCGCFLTGIAFSLVMPFLPLYVELLGVTD-PHSLNMWSGLVFSITFLFS-AIASP 73

Query: 101 FWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYAC 160
           FWG +ADR GRK +++     + +   L GL+ + W  +  R +LG L G +    A   
Sbjct: 74  FWGGLADRKGRKIMLLRSALGMSVVMVLMGLATSIWQFLALRAVLGLLGGFVPNANALIA 133

Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL 220
                      L  +ST    G +IGP +GG LA      P  F + S+         C 
Sbjct: 134 TQVPRNKSGWALGWLSTGAVSGALIGPLIGGLLADSFGLRPVFFITASV------LFVCF 187

Query: 221 CISLFAFGE---------TLHRHN 235
            ++LFA  E          LH H 
Sbjct: 188 IMTLFAVREEFVPVQKKDMLHAHQ 211

Erwinia billingiae (strain Eb661) (taxid: 634500)

>sp|P39843|BMR2_BACSU Multidrug resistance protein 2 OS=Bacillus subtilis (strain 168) GN=blt PE=3 SV=1

 Score = 62.8 bits (151), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 157/365 (43%), Gaps = 55/365 (15%)

Query: 81  GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVL 140
           GS  GY+ ++F   + +TS F G   DR+GRK +II+G     +   +FGL  +  +   
Sbjct: 44  GSTMGYLVAAFAISQLITSPFAGRWVDRFGRKKMIILGLLIFSLSELIFGLGTHVSIFYF 103

Query: 141 TRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK 199
           +R L G     + P + AY  +I   + ++  +  VS A   G IIGP  GGF+A    +
Sbjct: 104 SRILGGVSAAFIMPAVTAYVADITTLKERSKAMGYVSAAISTGFIIGPGAGGFIAGFGIR 163

Query: 200 YPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEE 259
            P  F+S          L     S+F   E+L            S +     S+  KE  
Sbjct: 164 MPFFFASAIA-------LIAAVTSVFILKESL------------SIEERHQLSSHTKESN 204

Query: 260 GREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWAN-----SPKKLGGLNYSTQ 314
             +   K+S+   + +   I+    F L   AY  +FSL+++     +PK +  +   + 
Sbjct: 205 FIKDL-KRSIHPVYFIAFIIVFVMAFGLS--AYETVFSLFSDHKFGFTPKDIAAIITISS 261

Query: 315 MVGEVLAITGFSLLVFQLSLYPFLE--RILGPIMV---ARIAGVLTIPLLTSYPYIAMLS 369
           +V  V+ +  F  LV +L     ++   I G I+      ++G LT+ L+T + ++A   
Sbjct: 262 IVAVVIQVLLFGKLVNKLGEKRMIQLCLITGAILAFVSTVMSGFLTVLLVTCFIFLAF-- 319

Query: 370 GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAG 429
                          +LL  ++      L N A   +Q+G   G+  T  SL    GPA 
Sbjct: 320 ---------------DLLRPALTAH---LSNMA--GNQQGFVAGMNSTYTSLGNIFGPAL 359

Query: 430 GGALF 434
           GG LF
Sbjct: 360 GGILF 364

Energy-dependent efflux pump responsible for decreased drug accumulation in multi-drug-resistant cells. Probably uses a transmembrane proton gradient as the energy source. Causes the efflux of a variety of toxic substances, including such structurally diverse compounds as ethidium bromide, rhodamine and acridine dyes, tetraphenylphosphonium, puromycin, chloramphenicol, doxorubicin, and fluoroquinolone antibiotics.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q6GBD5|NORA_STAAS Quinolone resistance protein NorA OS=Staphylococcus aureus (strain MSSA476) GN=norA PE=3 SV=1

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 122/285 (42%), Gaps = 44/285 (15%)

Query: 42  ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVF 101
           ++F ++  +    L I  + P L   +KD  +       GS  G + ++F   + + S F
Sbjct: 4   QIFVLYFNIFLIFLGIGLVIPVLPVYLKDLGLT------GSDLGLLVAAFALSQMIISPF 57

Query: 102 WGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYAC 160
            G +AD+ G+K +I +G     +   +F +  NF + +L+R + G   G++ P +     
Sbjct: 58  GGTLADKLGKKLIICIGLILFSVSEFMFAVGHNFSVLMLSRVIGGMSAGMVMPGVTGLIA 117

Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL 220
           +I     +A     +S     G I+GP +GGF+A+ + + P  F+               
Sbjct: 118 DISPSHQKAKNFGYMSAIINSGFILGPGIGGFMAEVSHRMPFYFAG-------------- 163

Query: 221 CISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPL-MSSI 279
            + + AF  ++   +D   S    +  LE               P+     NW + ++ +
Sbjct: 164 ALGILAFIMSIVLIHDPKKSTTSGFQKLE---------------PQLLTKINWKVFITPV 208

Query: 280 IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITG 324
           I+  V SL   A+  ++SL+         +NYS + +   +AITG
Sbjct: 209 ILTLVLSLGLSAFETLYSLYTADK-----VNYSPKDIS--IAITG 246

Involved in quinolone resistance. May constitute a membrane-associated active efflux pump of hydrophilic quinolones.

Staphylococcus aureus (strain MSSA476) (taxid: 282459)

>sp|P0A4K5|PMRA_STRR6 Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pmrA PE=3 SV=1

 Score = 60.5 bits (145), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 47  WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVA 106
           W     T   IS + PF+   +++  +  ++  +  YAG   S      AL S  WG++A
Sbjct: 14  WFGNFLTGASISLVVPFMPIFVENLGVGSQQ--VAFYAGLAISVSAISAALFSPIWGILA 71

Query: 107 DRYGRKPVIIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPIKAYACEIFR 164
           D+YGRKP++I    ++ I  T+ GL+   N +  +  R L G   G +    A       
Sbjct: 72  DKYGRKPMMIRAGLAMTI--TMGGLAFVPNIYWLIFLRLLNGVFAGFVPNATALIASQVP 129

Query: 165 EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           +E     L T+ST    G + GP +GGF+A+
Sbjct: 130 KEKSGSALGTLSTGVVAGTLTGPFIGGFIAE 160

Efflux pump for various substrates.

Streptococcus pneumoniae (strain ATCC BAA-255 / R6) (taxid: 171101)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	477
224097490	495	predicted protein [Populus trichocarpa]	0.987	0.951	0.751	0.0
359487104	1624	PREDICTED: uncharacterized protein LOC10	0.983	0.288	0.707	0.0
296085436	518	unnamed protein product [Vitis vinifera]	0.987	0.909	0.704	0.0
225465403	487	PREDICTED: protein ZINC INDUCED FACILITA	0.983	0.963	0.728	0.0
225465405	487	PREDICTED: protein ZINC INDUCED FACILITA	0.985	0.965	0.742	0.0
297807399	479	hypothetical protein ARALYDRAFT_488196 [	0.976	0.972	0.687	0.0
30684565	478	zinc induced facilitator-like 1 protein	0.962	0.960	0.685	0.0
359481459	490	PREDICTED: protein ZINC INDUCED FACILITA	0.979	0.953	0.673	0.0
224086687	478	predicted protein [Populus trichocarpa]	0.972	0.970	0.659	0.0
356548793	488	PREDICTED: protein ZINC INDUCED FACILITA	0.979	0.956	0.654	0.0

>gi|224097490|ref|XP_002310957.1| predicted protein [Populus trichocarpa] gi|222850777|gb|EEE88324.1| predicted protein [Populus trichocarpa]

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/487 (75%), Positives = 419/487 (86%), Gaps = 16/487 (3%)

Query: 6   EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
           E+ RE  LK +  YYENCPGCKVDQLK+ K G P  +L SIWI+VLCTALPIS+LFPFLY
Sbjct: 3   EEYREALLKKDD-YYENCPGCKVDQLKELKKGFPFRDLISIWIVVLCTALPISTLFPFLY 61

Query: 66  FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
           FMI+DF IA+REEDIG YAGYVGSSFM GRALTSVFWG+VADRYGRKPVI++GT +VVIF
Sbjct: 62  FMIRDFGIAEREEDIGYYAGYVGSSFMIGRALTSVFWGIVADRYGRKPVILLGTIAVVIF 121

Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
           NTLFGLSVNFWMA++TRFLLGSLNGLLGPIKAYA EIFR E+QALGLSTVSTAWG+GLII
Sbjct: 122 NTLFGLSVNFWMAIITRFLLGSLNGLLGPIKAYAVEIFRAEYQALGLSTVSTAWGLGLII 181

Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA---------FGETLHRHND 236
           GPALGGFLAQPAEKYPNLFS ESLFG+FPYFLPC CISLFA           ETLH HN+
Sbjct: 182 GPALGGFLAQPAEKYPNLFSKESLFGRFPYFLPCFCISLFALVVTIVSCWLPETLHVHNE 241

Query: 237 DDDSCDVSYDALESASAEVK------EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 290
              S + SYDALE+A+   K      +++GR+ +  +SLLKNWPLMSSIIVYC+FSLHDM
Sbjct: 242 KKTSSNDSYDALEAATGASKGDETRTDDKGRKPSSNESLLKNWPLMSSIIVYCIFSLHDM 301

Query: 291 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 350
           AY+EIFSLWA S +KLGGL Y+T+ VGEVLAI+GFSLLVFQLSLYPF+ERILGPI VA+I
Sbjct: 302 AYTEIFSLWAESSRKLGGLGYTTEDVGEVLAISGFSLLVFQLSLYPFVERILGPIPVAQI 361

Query: 351 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGA 410
           A  L+I LL+SYP+IAMLSG GL+ L+NCAS++KN+ SVSI+TG+FILQN AVDQ+QRGA
Sbjct: 362 AAALSILLLSSYPFIAMLSGLGLSILINCASIMKNVFSVSIVTGMFILQNNAVDQNQRGA 421

Query: 411 ANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKP 470
           ANGI+MTGMSLFKA GPAGGGA+ SWAQ+R +A+FLPG QMVFF+LN VE IG+LMTFKP
Sbjct: 422 ANGISMTGMSLFKAVGPAGGGAILSWAQRRQNAAFLPGVQMVFFILNAVELIGLLMTFKP 481

Query: 471 FLAQRHD 477
           FLAQR D
Sbjct: 482 FLAQRQD 488

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487104|ref|XP_002274088.2| PREDICTED: uncharacterized protein LOC100259102 [Vitis vinifera]

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/485 (70%), Positives = 404/485 (83%), Gaps = 16/485 (3%)

Query: 5    EEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFL 64
            EE+ RE  LK  K Y+E CPGC+V+ LKDT+ GLP+ +LF +WI+VLC ALPISSLFP+L
Sbjct: 1140 EEEQREVLLK--KVYHEGCPGCRVEHLKDTQRGLPVRQLFFVWIVVLCNALPISSLFPYL 1197

Query: 65   YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124
            YFMI+DF IAK E+DIG YAGY G+S+MFGRALTS+ WG+VADRYGRKPVI++GTASVVI
Sbjct: 1198 YFMIRDFNIAKTEKDIGYYAGYAGASYMFGRALTSILWGMVADRYGRKPVILVGTASVVI 1257

Query: 125  FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLI 184
            FNTLFGLS+N+WMA+ +RFLLGS++ LLGPI AYA EIFREE+QALGLST++TAWG+GLI
Sbjct: 1258 FNTLFGLSLNYWMAISSRFLLGSMSTLLGPIMAYATEIFREEYQALGLSTINTAWGVGLI 1317

Query: 185  IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFG---------ETLHRHN 235
            IGPALGGFLAQPAEKYPN+FS ES+FG+FPYFLPCLC S++AFG         ETLH HN
Sbjct: 1318 IGPALGGFLAQPAEKYPNIFSKESIFGRFPYFLPCLCTSVYAFGITIACCWLQETLHTHN 1377

Query: 236  DDDDSCDVSYDALE-----SASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 290
            +++     SY+ALE     +A   V E E  + T K+SL+KNWPLMSSIIV+CVFSLHDM
Sbjct: 1378 ENNKLSKNSYNALEAPCGFNAEEAVNEIEANKPTSKESLIKNWPLMSSIIVFCVFSLHDM 1437

Query: 291  AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 350
            AYSEIFSLWA SP+K GGL+YST  VG VLAI+GF +LVFQL LYP+LE++LGPI++ RI
Sbjct: 1438 AYSEIFSLWAVSPRKYGGLSYSTDDVGVVLAISGFGVLVFQLFLYPYLEKLLGPIIICRI 1497

Query: 351  AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGA 410
            AGVL+IPLL  YP IAMLSGF L+  LNCAS +KN+LSVSI T L ILQNRAV+Q QRGA
Sbjct: 1498 AGVLSIPLLAIYPLIAMLSGFNLSLALNCASAMKNVLSVSIGTSLIILQNRAVEQHQRGA 1557

Query: 411  ANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKP 470
            ANGI MT MSLFKAAGPAGGG +FSWAQ R  A+F PG QM+FF+LNVVEAI VLMTFKP
Sbjct: 1558 ANGITMTTMSLFKAAGPAGGGVIFSWAQGRQRAAFFPGDQMIFFILNVVEAIAVLMTFKP 1617

Query: 471  FLAQR 475
            FL +R
Sbjct: 1618 FLVRR 1622

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085436|emb|CBI29168.3| unnamed protein product [Vitis vinifera]

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/487 (70%), Positives = 404/487 (82%), Gaps = 16/487 (3%)

Query: 5   EEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFL 64
           EE+ RE  LK  K Y+E CPGC+V+ LKDT+ GLP+ +LF +WI+VLC ALPISSLFP+L
Sbjct: 34  EEEQREVLLK--KVYHEGCPGCRVEHLKDTQRGLPVRQLFFVWIVVLCNALPISSLFPYL 91

Query: 65  YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124
           YFMI+DF IAK E+DIG YAGY G+S+MFGRALTS+ WG+VADRYGRKPVI++GTASVVI
Sbjct: 92  YFMIRDFNIAKTEKDIGYYAGYAGASYMFGRALTSILWGMVADRYGRKPVILVGTASVVI 151

Query: 125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLI 184
           FNTLFGLS+N+WMA+ +RFLLGS++ LLGPI AYA EIFREE+QALGLST++TAWG+GLI
Sbjct: 152 FNTLFGLSLNYWMAISSRFLLGSMSTLLGPIMAYATEIFREEYQALGLSTINTAWGVGLI 211

Query: 185 IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFG---------ETLHRHN 235
           IGPALGGFLAQPAEKYPN+FS ES+FG+FPYFLPCLC S++AFG         ETLH HN
Sbjct: 212 IGPALGGFLAQPAEKYPNIFSKESIFGRFPYFLPCLCTSVYAFGITIACCWLQETLHTHN 271

Query: 236 DDDDSCDVSYDALES-----ASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 290
           +++     SY+ALE+     A   V E E  + T K+SL+KNWPLMSSIIV+CVFSLHDM
Sbjct: 272 ENNKLSKNSYNALEAPCGFNAEEAVNEIEANKPTSKESLIKNWPLMSSIIVFCVFSLHDM 331

Query: 291 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 350
           AYSEIFSLWA SP+K GGL+YST  VG VLAI+GF +LVFQL LYP+LE++LGPI++ RI
Sbjct: 332 AYSEIFSLWAVSPRKYGGLSYSTDDVGVVLAISGFGVLVFQLFLYPYLEKLLGPIIICRI 391

Query: 351 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGA 410
           AGVL+IPLL  YP IAMLSGF L+  LNCAS +KN+LSVSI T L ILQNRAV+Q QRGA
Sbjct: 392 AGVLSIPLLAIYPLIAMLSGFNLSLALNCASAMKNVLSVSIGTSLIILQNRAVEQHQRGA 451

Query: 411 ANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKP 470
           ANGI MT MSLFKAAGPAGGG +FSWAQ R  A+F PG QM+FF+LNVVEAI VLMTFKP
Sbjct: 452 ANGITMTTMSLFKAAGPAGGGVIFSWAQGRQRAAFFPGDQMIFFILNVVEAIAVLMTFKP 511

Query: 471 FLAQRHD 477
           FL +R  
Sbjct: 512 FLVRRSQ 518

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465403|ref|XP_002277598.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1 [Vitis vinifera] gi|296085440|emb|CBI29172.3| unnamed protein product [Vitis vinifera]

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/486 (72%), Positives = 407/486 (83%), Gaps = 17/486 (3%)

Query: 6   EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
           E+ + P LK  K YY+NC GC+V+QLK+T+ GLPI EL SIW +VLCTALPISSLFPFLY
Sbjct: 3   EEQQVPLLK--KVYYQNCSGCRVEQLKETRRGLPIRELVSIWSVVLCTALPISSLFPFLY 60

Query: 66  FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
           FMI+DF IAKREEDIG YAGYVGS+FM GRALTSV WG+VADRYGRKPVI++GT +VVIF
Sbjct: 61  FMIRDFHIAKREEDIGYYAGYVGSAFMLGRALTSVAWGMVADRYGRKPVIMIGTITVVIF 120

Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
           NTLFGLSVNFWMA+ TRFLLGSLNG+LGPIKAYA EIFR+E+QALGLSTVSTA GIGLII
Sbjct: 121 NTLFGLSVNFWMALSTRFLLGSLNGVLGPIKAYAAEIFRDEYQALGLSTVSTARGIGLII 180

Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA---------FGETLHRHND 236
           GPALGGFLAQPAEKYP++FS +SLFG+FPYFLPCL IS++A           ETLH HN+
Sbjct: 181 GPALGGFLAQPAEKYPDIFSEDSLFGRFPYFLPCLFISVYAMIITVACCWLPETLHTHNE 240

Query: 237 DDDSCDVSYDALESA----SAEVKEE--EGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 290
           +  S + SYDALE A    +A+ KE+  EG E T  +SL  NWPLMSSII+YCVFSLHD+
Sbjct: 241 NKKSREDSYDALEGANGGSNAKEKEQEIEGSEPTSNESLFMNWPLMSSIIIYCVFSLHDI 300

Query: 291 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 350
           AY EIFSLWA SP+  GGL+YST  VG VLAI+GF L V Q++LYP +ER LGP+M+ RI
Sbjct: 301 AYIEIFSLWAVSPRIHGGLSYSTDDVGVVLAISGFGLFVSQVTLYPLVERFLGPVMICRI 360

Query: 351 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGA 410
           AGVL+IPLL SYP IAMLSG  L+ +LNCASV+KN+LSVSIITG+F+LQN AVDQ QRG 
Sbjct: 361 AGVLSIPLLASYPLIAMLSGSTLSVVLNCASVLKNVLSVSIITGMFLLQNSAVDQHQRGT 420

Query: 411 ANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKP 470
           ANGI+MT MSLFKAAGPAGGGALFSWAQKR D++F PG QMVF +LNVVEAIG+LMTFKP
Sbjct: 421 ANGISMTAMSLFKAAGPAGGGALFSWAQKRQDSAFFPGDQMVFLILNVVEAIGLLMTFKP 480

Query: 471 FLAQRH 476
           FL QR 
Sbjct: 481 FLVQRR 486

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465405|ref|XP_002277751.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1 [Vitis vinifera] gi|296085442|emb|CBI29174.3| unnamed protein product [Vitis vinifera]

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/489 (74%), Positives = 413/489 (84%), Gaps = 19/489 (3%)

Query: 3   AGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFP 62
           A E+++  P LK  K YY+NC GC+V+QLK+T+ GLPI EL SIW +VLCTALPISSLFP
Sbjct: 2   AAEQQV--PLLK--KVYYQNCSGCRVEQLKETRRGLPIRELLSIWTVVLCTALPISSLFP 57

Query: 63  FLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV 122
           FLYFMI+DF IAKREEDIG YAGYVGS+FM GRALTSV WG+VADRYGRKPVI++GT +V
Sbjct: 58  FLYFMIRDFHIAKREEDIGYYAGYVGSAFMLGRALTSVAWGMVADRYGRKPVIMIGTIAV 117

Query: 123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIG 182
           VIFNTLFGLSVNFWMA+ TRFLLGSLNGLLGPIKAYA EIFR+E+QALGLSTVSTAWGIG
Sbjct: 118 VIFNTLFGLSVNFWMALSTRFLLGSLNGLLGPIKAYAAEIFRDEYQALGLSTVSTAWGIG 177

Query: 183 LIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA---------FGETLHR 233
           LIIGPALGGFLAQPAEKYP++FS +SLFG+FPYFLPCL IS++A           ETLH 
Sbjct: 178 LIIGPALGGFLAQPAEKYPDIFSEDSLFGRFPYFLPCLFISVYAMIVTVACCWLPETLHT 237

Query: 234 HNDDDDSCDVSYDALESA----SAEVKEE--EGREATPKKSLLKNWPLMSSIIVYCVFSL 287
           HN++  S + SYDALE+A    +A+ KE+  EG E T  +SL  NWPLMSSIIVYCVFSL
Sbjct: 238 HNENKKSREDSYDALEAANGGSNAKEKEQEIEGSEPTSNESLFMNWPLMSSIIVYCVFSL 297

Query: 288 HDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV 347
           HDMAY+EIFSLWA SP+  GGL+YST  VG VLAI+GF LLV QL+LYP +ER LGP+M+
Sbjct: 298 HDMAYTEIFSLWAVSPRIHGGLSYSTDDVGVVLAISGFGLLVSQLTLYPLVERFLGPVMI 357

Query: 348 ARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQ 407
            RIAGVL+IPLL SYP IAMLSG  L+ +LNCASV+KN+LSVSIITGLF+LQN AVDQ Q
Sbjct: 358 CRIAGVLSIPLLASYPLIAMLSGSSLSVVLNCASVLKNVLSVSIITGLFLLQNSAVDQHQ 417

Query: 408 RGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT 467
           RG ANGI+MT MSLFKAAGPAGGGALFSWAQKR D++F PG QMVF +LNVVEAIGVLMT
Sbjct: 418 RGTANGISMTAMSLFKAAGPAGGGALFSWAQKRQDSAFFPGDQMVFLILNVVEAIGVLMT 477

Query: 468 FKPFLAQRH 476
           FKPFL QR 
Sbjct: 478 FKPFLVQRR 486

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807399|ref|XP_002871583.1| hypothetical protein ARALYDRAFT_488196 [Arabidopsis lyrata subsp. lyrata] gi|297317420|gb|EFH47842.1| hypothetical protein ARALYDRAFT_488196 [Arabidopsis lyrata subsp. lyrata]

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/483 (68%), Positives = 388/483 (80%), Gaps = 17/483 (3%)

Query: 6   EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
           E+  E  L+N  +++E+CPGCKVDQ+K  + G P+ ELF++WIIVLCTALPISSLFPFLY
Sbjct: 3   EEYTECLLEN--KFHEDCPGCKVDQMKRLRRGFPLWELFTVWIIVLCTALPISSLFPFLY 60

Query: 66  FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
           FMI DF IAK+EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+F
Sbjct: 61  FMIDDFNIAKKEEDIGFYAGFVGCSFMLGRAFTSVIWGLVADRYGRKPVILIGTASVVVF 120

Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
           NTLFGLS+NFWMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLII
Sbjct: 121 NTLFGLSLNFWMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLII 180

Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAF---------GETLHRHN- 235
           GPA+GGFLAQPA +YP+LFS +S+FGKFP+FLPC  IS+FAF          ETLH H  
Sbjct: 181 GPAIGGFLAQPATQYPSLFSQDSIFGKFPFFLPCFAISVFAFLVTIISLWIPETLHNHKY 240

Query: 236 -DDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSE 294
            DDDD    S+DAL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+E
Sbjct: 241 VDDDD----SFDALKYLSHDPESNKVVERNEKSSLLNNWPLISSIIVYCVFSLHDMAYTE 296

Query: 295 IFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL 354
           IFSLWANSP+K GGL YST  VG VLAI+GF LL+FQLSLY + ER+LGPI+V RI+G+L
Sbjct: 297 IFSLWANSPRKYGGLGYSTADVGSVLAISGFGLLIFQLSLYSYAERLLGPIIVTRISGIL 356

Query: 355 TIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGI 414
            + +L+ YP IA LSG  L   +N ASV KN+LS S ITGLFILQN AV QDQRGAANGI
Sbjct: 357 AMVILSCYPLIAKLSGLALTLAVNSASVAKNVLSTSAITGLFILQNNAVRQDQRGAANGI 416

Query: 415 AMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQ 474
           AMT MSLFKA GPA  G +FSW++KR DA+F PG+QMVFF+LNVV A+GVLMTFKPFLA+
Sbjct: 417 AMTAMSLFKAIGPAAAGIIFSWSEKRQDAAFFPGTQMVFFILNVVLALGVLMTFKPFLAE 476

Query: 475 RHD 477
              
Sbjct: 477 TQQ 479

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30684565|ref|NP_851036.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana] gi|75249957|sp|Q94BZ1.1|ZIFL1_ARATH RecName: Full=Protein ZINC INDUCED FACILITATOR-LIKE 1; AltName: Full=Protein ZIF-LIKE 1 gi|14517414|gb|AAK62597.1| AT5g13750/MXE10_2 [Arabidopsis thaliana] gi|17065582|gb|AAL32945.1| transporter-like protein [Arabidopsis thaliana] gi|20857393|gb|AAM26717.1| AT5g13750/MXE10_2 [Arabidopsis thaliana] gi|332004552|gb|AED91935.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana]

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/471 (68%), Positives = 379/471 (80%), Gaps = 12/471 (2%)

Query: 16  EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
           EK ++E+C GCKVDQ+K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct: 11  EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query: 76  REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
           +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct: 71  KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query: 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIGPA+GGFLAQ
Sbjct: 131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query: 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAF---------GETLHRHNDDDDSCDVSYD 246
           PA++YP+LFS +S+FGKFP+FLPCL IS+FAF          ETLH H  +DD    SYD
Sbjct: 191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDE---SYD 247

Query: 247 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 306
           AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K 
Sbjct: 248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307

Query: 307 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 366
           GGL YST  VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G L + +L+ YP IA
Sbjct: 308 GGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPLIA 367

Query: 367 MLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAG 426
            LSG  L   +  ASV K++L  S ITGLFILQN+AV QDQRGAANGIAMT MSLFKA G
Sbjct: 368 KLSGLALTVTVTSASVAKSVLGTSAITGLFILQNKAVRQDQRGAANGIAMTAMSLFKAIG 427

Query: 427 PAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRHD 477
           PA  G +FSW++KR  A+FLPG+QMVFF+LNVV A+GV++TFKPFLA+   
Sbjct: 428 PAAAGIIFSWSEKRQGAAFLPGTQMVFFILNVVLALGVVLTFKPFLAETQQ 478

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481459|ref|XP_003632620.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Vitis vinifera] gi|297741718|emb|CBI32850.3| unnamed protein product [Vitis vinifera]

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/481 (67%), Positives = 388/481 (80%), Gaps = 14/481 (2%)

Query: 7   KLREPFLKNEK-RYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
           K RE  LK E   Y E+CPGCK+D LK++  G+P   LF +WI+VLC ALPISSLFPFLY
Sbjct: 3   KNREALLKKEVWEYDESCPGCKIDHLKESNPGIPFKLLFYVWIVVLCAALPISSLFPFLY 62

Query: 66  FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
           FMI+DF IAKREEDIG YAGYVGSSFMFGRALTSV WG+VADRYGRKPVI  G  +++IF
Sbjct: 63  FMIRDFHIAKREEDIGFYAGYVGSSFMFGRALTSVIWGMVADRYGRKPVITAGLIALIIF 122

Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
           NTLFGLS N WMA+ TRFLLGS  G+LGP++AYA E+ R+E+QALG+S +STAWGIGL+I
Sbjct: 123 NTLFGLSTNVWMALSTRFLLGSFCGILGPMRAYASEVCRKEYQALGMSIISTAWGIGLVI 182

Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFG---------ETLHRHND 236
           GPALGGFLAQPAEK+P++FS ESLFG+FPYFLPCL IS FA G         ETLH H +
Sbjct: 183 GPALGGFLAQPAEKFPHIFSKESLFGRFPYFLPCLLISTFALGVSVLCYWLPETLHIHKE 242

Query: 237 DDDSCDVSYDALESASAEVKEE----EGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAY 292
           + +  ++    + +   +VKE+    EG+    ++SLLKNWPLMSSIIVYCVF LHDMAY
Sbjct: 243 NKEQDELYAWEVAAYGCDVKEKLKKFEGKGPNQQQSLLKNWPLMSSIIVYCVFQLHDMAY 302

Query: 293 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 352
           +EIFSLWA SP + GGL+YST  VGEVLA++G  LL+FQL LYP LERILGP+MV+RI  
Sbjct: 303 AEIFSLWAISPSEYGGLSYSTADVGEVLAMSGLGLLLFQLFLYPPLERILGPVMVSRIGA 362

Query: 353 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAAN 412
           VLT+PLL+SYP IAMLSG GL+ L+NCAS++KN+L VSI TGLF+LQNRAV Q QRGAAN
Sbjct: 363 VLTVPLLSSYPLIAMLSGVGLSLLINCASLLKNVLCVSITTGLFLLQNRAVTQQQRGAAN 422

Query: 413 GIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFL 472
           GI+M+ MS FKA GPAGGG+LFSWA KR + SFLPGS+MVFF+LN++E +G+ MTFKPFL
Sbjct: 423 GISMSAMSFFKAVGPAGGGSLFSWALKRQNDSFLPGSRMVFFILNIIEVLGLFMTFKPFL 482

Query: 473 A 473
            
Sbjct: 483 T 483

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086687|ref|XP_002307932.1| predicted protein [Populus trichocarpa] gi|222853908|gb|EEE91455.1| predicted protein [Populus trichocarpa]

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/482 (65%), Positives = 387/482 (80%), Gaps = 18/482 (3%)

Query: 5   EEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFL 64
           E  + E  LK  K Y+E+CPGCK++  K+T +G+P   L  + I+VLC ALPISSLFPFL
Sbjct: 3   ENGIGESLLKKNK-YHEDCPGCKIEHFKETNTGVPFKHLLYVGIVVLCAALPISSLFPFL 61

Query: 65  YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124
           YFMI+D  IAKREEDIG YAGYVGS+FMFGRALTSV WG++ADRYGRKPVI+ GT SVVI
Sbjct: 62  YFMIRDLHIAKREEDIGYYAGYVGSAFMFGRALTSVLWGMIADRYGRKPVIMFGTISVVI 121

Query: 125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLI 184
           FNTLFG S NFWMAV TRFLLGSL G+LGP++AYA E+ R+E+QALG+S +ST+WGIGL+
Sbjct: 122 FNTLFGFSTNFWMAVSTRFLLGSLCGILGPMRAYASEVCRKEYQALGMSIISTSWGIGLV 181

Query: 185 IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFG---------ETLHRHN 235
           IGPALGGFLAQPA+KYPN+FS++SLFG+FPY LPCL IS+F+ G         ETLH H 
Sbjct: 182 IGPALGGFLAQPAQKYPNIFSTDSLFGRFPYLLPCLLISIFSVGVIAVCCLLPETLHSHV 241

Query: 236 DDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEI 295
            + + C+ S  AL +A+ E         +P+KSLLKNWPL+SSIIVYCVF LHDMAY+EI
Sbjct: 242 GNGEECNDSV-ALGAAAFE-------SNSPRKSLLKNWPLISSIIVYCVFQLHDMAYAEI 293

Query: 296 FSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLT 355
           FSLWA SP+K GGL++ST  VGEVLA +G  LL+FQL +YP +ER  GP+MV+RI  VLT
Sbjct: 294 FSLWAVSPRKNGGLSFSTADVGEVLAFSGLGLLLFQLFIYPLVERNFGPVMVSRIGAVLT 353

Query: 356 IPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIA 415
           IPLL+SYP++AML G  L  L+NCAS++KN+L+VSI TGLF+LQNR+V Q QRGAANGI+
Sbjct: 354 IPLLSSYPFLAMLKGLALMLLINCASILKNVLAVSITTGLFLLQNRSVTQQQRGAANGIS 413

Query: 416 MTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQR 475
           M+ MSLFKA GPA GG+LFSWAQKR DA F PG QM+FF+LN++E IG+L+TFKPFLA  
Sbjct: 414 MSAMSLFKAIGPAAGGSLFSWAQKRQDAFFFPGDQMIFFLLNMIEVIGLLLTFKPFLALP 473

Query: 476 HD 477
            D
Sbjct: 474 DD 475

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548793|ref|XP_003542784.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Glycine max]

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/483 (65%), Positives = 394/483 (81%), Gaps = 16/483 (3%)

Query: 4   GEEKLREPFLKNEKRYYENCPGCKVDQLKDTK--SGLPITELFSIWIIVLCTALPISSLF 61
           GEE +++P L  E++YY++CPGCKVDQ K+     G+P+  LF +W++VLC ALPISSLF
Sbjct: 2   GEENVKQPLL--ERKYYKDCPGCKVDQAKELSEGKGVPVKNLFIMWMVVLCAALPISSLF 59

Query: 62  PFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS 121
           PFLYFM++DF IAK E DI SYAGYVGSSFM GR LTSV WG+VADRYGRKPVI+MG  +
Sbjct: 60  PFLYFMVRDFNIAKTEADISSYAGYVGSSFMLGRCLTSVLWGIVADRYGRKPVIVMGIIA 119

Query: 122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGI 181
           VVIFNTLFGLS NFWMAV+ RFLLGSLNGLLGP+KAYA E+FREEHQA+GLSTVS AWGI
Sbjct: 120 VVIFNTLFGLSTNFWMAVIMRFLLGSLNGLLGPVKAYASELFREEHQAIGLSTVSAAWGI 179

Query: 182 GLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAF---------GETLH 232
           GLIIGPALGG+LAQP EKYP++F+ +S + KFPYFLP L IS FAF          ETLH
Sbjct: 180 GLIIGPALGGYLAQPVEKYPHIFTKDSFWDKFPYFLPNLIISAFAFVVAIGCIWIPETLH 239

Query: 233 RHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAY 292
            HN  ++S D    ALES ++    E  +      +LL NWPLMSSIIVYCVFSLHD+AY
Sbjct: 240 NHNCSNESTD-DAKALESGNSGAGNE--KIIQKNDNLLLNWPLMSSIIVYCVFSLHDIAY 296

Query: 293 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 352
            E+FSLWA SP++LGGLN++T  VG+VL+I+G +L+++QL+LYPF+E+  GPI++AR +G
Sbjct: 297 QEVFSLWAVSPQRLGGLNFTTDNVGDVLSISGLALIIYQLTLYPFVEKASGPIVIARFSG 356

Query: 353 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAAN 412
           +LTIPLL SYP+IA+LSG  L  +++ AS++KN++S++IIT LF+LQNRAV+Q QRGAAN
Sbjct: 357 MLTIPLLQSYPFIALLSGLALYIVISIASILKNIMSITIITSLFLLQNRAVEQHQRGAAN 416

Query: 413 GIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFL 472
           GI+MT MSLFKA GPA GGA+ +W+QKR+DASFLPG+ MVFFVLN+VEA+G+LM FKPFL
Sbjct: 417 GISMTAMSLFKAIGPATGGAVLTWSQKRMDASFLPGTHMVFFVLNIVEALGILMMFKPFL 476

Query: 473 AQR 475
            ++
Sbjct: 477 VEK 479

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	477
TAIR|locus:2177105	478	ZIFL1 "zinc induced facilitato	0.955	0.953	0.645	6.1e-158
TAIR|locus:2173254	486	ZIF1 "zinc induced facilitator	0.976	0.958	0.604	2.9e-151
TAIR|locus:2101109	484	ZIFL2 "AT3G43790" [Arabidopsis	0.949	0.935	0.565	2.5e-136
ASPGD|ASPL0000053890	591	AN0890 [Emericella nidulans (t	0.404	0.326	0.348	6.8e-41
DICTYBASE|DDB_G0269964	665	DDB_G0269964 "Uncharacterized	0.402	0.288	0.312	1.8e-32
CGD|CAL0002781	633	orf19.4550 [Candida albicans (	0.301	0.227	0.379	3.1e-30
CGD|CAL0004954	546	orf19.3432 [Candida albicans (	0.301	0.263	0.386	6.8e-30
ASPGD|ASPL0000051539	480	AN1423 [Emericella nidulans (t	0.308	0.306	0.355	4.6e-29
DICTYBASE|DDB_G0282945	669	DDB_G0282945 [Dictyostelium di	0.415	0.295	0.303	7.5e-28
ASPGD|ASPL0000004453	576	AN6623 [Emericella nidulans (t	0.293	0.243	0.323	8.9e-26

TAIR|locus:2177105 ZIFL1 "zinc induced facilitator-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1539 (546.8 bits), Expect = 6.1e-158, P = 6.1e-158
 Identities = 302/468 (64%), Positives = 356/468 (76%)

Query:    16 EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
             EK ++E+C GCKVDQ+K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct:    11 EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query:    76 REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
             +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct:    71 KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query:   136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQ 195
             WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VST                 Q
Sbjct:   131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query:   196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAF---------GETLHRHNXXXXXXXXXXX 246
             PA++YP+LFS +S+FGKFP+FLPCL IS+FAF          ETLH H            
Sbjct:   191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDESYD--- 247

Query:   247 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 306
             AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K 
Sbjct:   248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307

Query:   307 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 366
             GGL YST  VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G L + +L+ YP IA
Sbjct:   308 GGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPLIA 367

Query:   367 MLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAG 426
              LSG  L   +  ASV K++L  S ITGLFILQN+AV QDQRGAANGIAMT MSLFKA G
Sbjct:   368 KLSGLALTVTVTSASVAKSVLGTSAITGLFILQNKAVRQDQRGAANGIAMTAMSLFKAIG 427

Query:   427 PAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQ 474
             PA  G +FSW++KR  A+FLPG+QMVFF+LNVV A+GV++TFKPFLA+
Sbjct:   428 PAAAGIIFSWSEKRQGAAFLPGTQMVFFILNVVLALGVVLTFKPFLAE 475

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2173254 ZIF1 "zinc induced facilitator 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1476 (524.6 bits), Expect = 2.9e-151, P = 2.9e-151
 Identities = 290/480 (60%), Positives = 348/480 (72%)

Query:     6 EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
             E+ +E  L+ +  Y++ CPGCKV+Q+K  + G P  EL  +WIIVL T+LPISSL+PFLY
Sbjct:     3 EEYKEALLEKQN-YHDGCPGCKVEQMKQLRRGYPYLELSFVWIIVLSTSLPISSLYPFLY 61

Query:    66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
             +MI+DF +AK E+DIG YAG+VG SFM GRALTSVFWG+VADRYGRKP+I++GT S+ IF
Sbjct:    62 YMIEDFGVAKTEKDIGFYAGFVGCSFMLGRALTSVFWGIVADRYGRKPIILLGTISIAIF 121

Query:   126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXX 185
             N LFGLS NFWMA+ TRFLLGS N LLG +KAYA EIFR+E+QA  +S VST        
Sbjct:   122 NALFGLSSNFWMAIGTRFLLGSFNCLLGTMKAYASEIFRDEYQATAMSAVSTAWGIGLII 181

Query:   186 XXXXXXXXXQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAF---------GETLHRHNX 236
                      QPA+KYPN+FS ESLFG+F Y LPC  IS FA           ETLH H  
Sbjct:   182 GPALGGFLAQPADKYPNVFSQESLFGRFRYALPCFTISAFALLVTVLCCFIPETLHNHKL 241

Query:   237 XXXXXXXXXXALESASAEVKEEEGR----EATPKKSLLKNWPLMSSIIVYCVFSLHDMAY 292
                        LE+AS E     G+    E    +SLLKNWPLMSSIIVYCV  LHD AY
Sbjct:   242 DSLSHDDSYDILEAASHESSPSTGKAGKNERKASQSLLKNWPLMSSIIVYCVLCLHDTAY 301

Query:   293 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 352
             SEIF+LWANSP+K GGL+YST  VG VLAI+G  L  FQ+ +YP  E++LGP++V R AG
Sbjct:   302 SEIFALWANSPRKYGGLSYSTNEVGTVLAISGLGLFSFQVFVYPLAEKLLGPVLVTRYAG 361

Query:   353 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAAN 412
              L IP+  SYP+IA LSG  L+ +LNCAS++ N+LSVS ITGL ILQNRAVDQ QRGAAN
Sbjct:   362 ALMIPIQMSYPFIAGLSGLSLSLMLNCASILINVLSVSAITGLLILQNRAVDQSQRGAAN 421

Query:   413 GIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFL 472
             GIAMT MSLFK  GPAG G LFSW+++RL+A+FLPGS MVFFVLNV+  +GV +TFKPFL
Sbjct:   422 GIAMTAMSLFKTVGPAGAGILFSWSERRLNAAFLPGSHMVFFVLNVIVVVGVALTFKPFL 481

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0010043 "response to zinc ion" evidence=IEP

GO:0055069 "zinc ion homeostasis" evidence=IMP

TAIR|locus:2101109 ZIFL2 "AT3G43790" [Arabidopsis thaliana (taxid:3702)]

 Score = 1335 (475.0 bits), Expect = 2.5e-136, P = 2.5e-136
 Identities = 265/469 (56%), Positives = 340/469 (72%)

Query:    21 ENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDI 80
             E+CPGC +D+ K  + G+P   L  IW++ LCTALPISSLFP++YFMI+DF IAK+EEDI
Sbjct:    15 EDCPGCIIDRTKQQQRGVPYLHLSFIWLVSLCTALPISSLFPYIYFMIRDFHIAKQEEDI 74

Query:    81 GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVL 140
             G YAG+VGSSFM GRALTS+FWG +ADRYGRKP+I++GT SV+IFNTLFGLS +FW+A+ 
Sbjct:    75 GFYAGFVGSSFMIGRALTSIFWGKLADRYGRKPIILIGTFSVIIFNTLFGLSTSFWLAIS 134

Query:   141 TRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKY 200
              RFLLG  N LLG I+AYA E+  EE+ AL LS VST                 QPAEKY
Sbjct:   135 VRFLLGCFNCLLGVIRAYASEVVSEEYNALSLSVVSTSRGIGLILGPAIGGYLAQPAEKY 194

Query:   201 PNLFSSESLFGKFPYFLPCLCISLFAFG---------ETLHRHNXXXXXXXXXXXALESA 251
             PN+FS  S+FG+FPYFLP L IS++A           ETLH                +  
Sbjct:   195 PNIFSQSSVFGRFPYFLPSLVISVYATAVLIACWWLPETLHTRCRIAQGRLNPTELNDDE 254

Query:   252 SAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNY 311
             S     +E ++   K SLL+N PLM+ IIVYCVFSL ++AY+EIFSLWA S +  GGL++
Sbjct:   255 SRGGGLDE-QKIINKPSLLRNRPLMAIIIVYCVFSLQEIAYNEIFSLWAVSDRSYGGLSF 313

Query:   312 STQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGF 371
             S+Q VGEVLAI+G  LLVFQL +YP LE+ +G + V R++ VL IPLL+ YPYIA+LSG 
Sbjct:   314 SSQDVGEVLAISGLGLLVFQLLVYPPLEKSVGLLAVIRLSAVLLIPLLSCYPYIALLSGV 373

Query:   372 GLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGG 431
              L  ++NCAS++KN LS+S++TGLFI+ N+AV Q+QRGAANGI+MT MS+FK+ GPAGGG
Sbjct:   374 TLHLVINCASIIKNALSISLVTGLFIMLNKAVPQNQRGAANGISMTAMSVFKSFGPAGGG 433

Query:   432 ALFSWAQKRLDASFLPGS------QMVFFVLNVVEAIGVLMTFKPFLAQ 474
              LFSWAQKR DA+FLPG       +MVF VLN+V+ +G+++TF P+++Q
Sbjct:   434 VLFSWAQKRQDATFLPGQIFAPCDEMVFLVLNLVQLVGLILTFIPYISQ 482

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

ASPGD|ASPL0000053890 AN0890 [Emericella nidulans (taxid:162425)]

 Score = 323 (118.8 bits), Expect = 6.8e-41, Sum P(2) = 6.8e-41
 Identities = 68/195 (34%), Positives = 100/195 (51%)

Query:    36 SGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGR 95
             S  PI +LF + +  +C  +   S+FP++Y M++ F +   +  I  YAG + SSF F  
Sbjct:    21 SAFPIRQLFVLALCRICEPIAFMSIFPYVYHMVESFHVTSNDRKIALYAGLITSSFTFAE 80

Query:    96 ALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI 155
                 +FWG ++D+ GRKPV+IMG     I   +FG + N   A++ R L G LNG +G +
Sbjct:    81 FSAGMFWGRMSDKIGRKPVLIMGLVGTAISMVVFGFAPNLATAMIARALGGLLNGNIGVL 140

Query:   156 KAYACEIFR-EEHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKYPNLFSSESLFGKFP 214
             +    EI   +EHQ    S +                   QP + YP LFS ES+F KFP
Sbjct:   141 QTTVAEIVTVKEHQPRAYSIMPFVWCLGSIIGPAMGGALSQPCDNYPWLFSGESIFKKFP 200

Query:   215 YFLPCL-CISLFAFG 228
             + LP L C+ +   G
Sbjct:   201 FLLPNLVCVVVLMTG 215

GO:0003674 "molecular_function" evidence=ND

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

DICTYBASE|DDB_G0269964 DDB_G0269964 "Uncharacterized membrane protein YCR023C" [Dictyostelium discoideum (taxid:44689)]

 Score = 269 (99.8 bits), Expect = 1.8e-32, Sum P(2) = 1.8e-32
 Identities = 60/192 (31%), Positives = 95/192 (49%)

Query:    32 KDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSF 91
             K+  + +P  +L   ++++LC A+  SS F ++   I    +  + E +G YAG++ SSF
Sbjct:     8 KNHVTPMPWKKLIGAYVLLLCEAISTSSFFTYISPFIIFLGVTDKAELVGYYAGFIASSF 67

Query:    92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGL 151
                + L+S FWG +ADR GRKP++I G+   VI     G S +  M +L+R + G LNG 
Sbjct:    68 SAAQFLSSFFWGKMADRLGRKPILIFGSVGSVISLLCIGTSKSLVMLILSRSINGLLNGN 127

Query:   152 LGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKYPNLFSSESLFG 211
             +G +K Y  E   + +Q      V                    P +   ++F    LF 
Sbjct:   128 IGVVKTYIGECTDKTNQVEAFGWVGLTWGLGSILGPSIGGLLADPVKNMSSIFKGSKLFE 187

Query:   212 KFPYFLPCLCIS 223
              FP+FLP L I+
Sbjct:   188 LFPFFLPNLVIA 199

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

CGD|CAL0002781 orf19.4550 [Candida albicans (taxid:5476)]

 Score = 291 (107.5 bits), Expect = 3.1e-30, Sum P(2) = 3.1e-30
 Identities = 55/145 (37%), Positives = 85/145 (58%)

Query:    32 KDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSF 91
             ++   G P+ ++F I  I     +  +SLFP++YFMI+DF IA    DI  Y+GY+ +SF
Sbjct:    11 REQMKGFPLWQMFVISCIRFSEPIAFTSLFPYVYFMIRDFNIAPHSTDIAKYSGYLSASF 70

Query:    92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGL 151
              F +    V WG  +D+YGRK +++MG     +   +FG S NFW+AV  R L+G LNG 
Sbjct:    71 AFCQFFCCVQWGKASDKYGRKKILLMGLLGTAVSMIIFGFSPNFWVAVFARSLMGCLNGN 130

Query:   152 LGPIKAYACEIF-REEHQALGLSTV 175
             +  ++    EI   + HQ++  ST+
Sbjct:   131 IAVLRTAIGEIATHKNHQSIAFSTL 155

GO:0015238 "drug transmembrane transporter activity" evidence=ISS

GO:0015893 "drug transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

CGD|CAL0004954 orf19.3432 [Candida albicans (taxid:5476)]

 Score = 275 (101.9 bits), Expect = 6.8e-30, Sum P(3) = 6.8e-30
 Identities = 56/145 (38%), Positives = 89/145 (61%)

Query:    32 KDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSF 91
             K++ +  PI ++  I II     L  +S+FP++YFMI+DF IA +EEDI  Y+GY+ SSF
Sbjct:     8 KESLNDFPIRQMIIICIIRFAEPLAFTSIFPYIYFMIRDFHIAIKEEDISQYSGYIASSF 67

Query:    92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGL 151
                + L ++ WG ++++ GRK ++I+G     I   LFG + N++ A++ R L G LNG 
Sbjct:    68 AICQFLFAIHWGTMSEKLGRKLILIIGLLGTSISLLLFGFARNYYWALIARCLAGVLNGN 127

Query:   152 LGPIKAYACEIFREE-HQALGLSTV 175
             +  ++    EI  E+ HQ L  ST+
Sbjct:   128 VAVLRTMIGEIAVEKRHQPLAFSTM 152

GO:0015238 "drug transmembrane transporter activity" evidence=ISS

GO:0015893 "drug transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

ASPGD|ASPL0000051539 AN1423 [Emericella nidulans (taxid:162425)]

 Score = 252 (93.8 bits), Expect = 4.6e-29, Sum P(2) = 4.6e-29
 Identities = 59/166 (35%), Positives = 88/166 (53%)

Query:    67 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 126
             M+KDF + +   D   YAG + ++F    A T +FWG ++DR GRKPVII G A  ++  
Sbjct:     1 MVKDFHMGEGS-DASFYAGILVATFSLVEAFTGMFWGALSDRVGRKPVIISGLAGTIVSL 59

Query:   127 TLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIF-REEHQALGLSTVSTXXXXXXXX 185
              + G + N+W+A+L R L G LNG +G I+    EI  R EH+   +  +          
Sbjct:    60 LIVGFAPNYWVALLGRGLGGLLNGNIGVIQTMVGEIVKRPEHERPAIGGL---------- 109

Query:   186 XXXXXXXXXQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETL 231
                      +PA+ YP++FS + +FG+FPY LP +  S    G  L
Sbjct:   110 -------LAKPADNYPSVFSRDGIFGRFPYLLPNVVCSTLLLGSIL 148

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

DICTYBASE|DDB_G0282945 DDB_G0282945 [Dictyostelium discoideum (taxid:44689)]

 Score = 274 (101.5 bits), Expect = 7.5e-28, Sum P(2) = 7.5e-28
 Identities = 60/198 (30%), Positives = 102/198 (51%)

Query:    29 DQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVG 88
             +QL DT + LP+ ++ +I+II+LC A+   S+FP++ F++  F +   +  +G + G + 
Sbjct:    65 NQLDDTITPLPMMKILAIFIIMLCDAINSLSIFPYVNFLVSSFNLTTDKNKLGYFVGILA 124

Query:    89 SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL 148
             SS+   + ++S FWG  ++  GR+P +++G    +I  T  G S N+ M V+ RFL G L
Sbjct:   125 SSYYIAQLVSSFFWGWFSNYRGRRPSLLLGLIGSMICLTGVGFSRNYPMVVVFRFLSGLL 184

Query:   149 NGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKYPNLFSSES 208
             NG +   K    EI    +QA   S +                      +K+P L    +
Sbjct:   185 NGNVSIAKTMLGEITDSSNQAKAFSFIGLSWGVGGIIAPLIGGFFSNFCKKHPELLGDGN 244

Query:   209 LFGKFPYFLPCLCISLFA 226
             +F +FPY LP +   LF+
Sbjct:   245 IFCRFPYLLPNIICVLFS 262

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

ASPGD|ASPL0000004453 AN6623 [Emericella nidulans (taxid:162425)]

 Score = 212 (79.7 bits), Expect = 8.9e-26, Sum P(2) = 8.9e-26
 Identities = 46/142 (32%), Positives = 76/142 (53%)

Query:    28 VDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYV 87
             +D+   ++S LP  ++  + +I LC     +S+ P+L  M   F  AK    +G Y G +
Sbjct:    52 IDE-STSQSPLPKKQIMVLALIALCEQTAFNSISPYLPDMASSFPEAKPGM-VGVYVGLI 109

Query:    88 GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS 147
             G++F   + +T+ FWG ++DR GRKPVI++GT    +    FG     W AV  + L+G 
Sbjct:   110 GTAFAVAQLVTNYFWGWLSDRIGRKPVILLGTVLTAVCFVAFGFCSTLWQAVAVQALMGV 169

Query:   148 LNGLLGPIKAYACEIFREEHQA 169
             +NG  G +     EI  + +Q+
Sbjct:   170 VNGNQGLVSTCLGEITDKSNQS 191

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94BZ1	ZIFL1_ARATH	No assigned EC number	0.6857	0.9622	0.9602	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	477
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	6e-22
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	5e-18
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	1e-11
PRK09874	408	PRK09874, PRK09874, drug efflux system protein Mdt	4e-11
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	8e-11
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	1e-10
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-08
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	4e-08
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	9e-08
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	3e-07
TIGR00900	365	TIGR00900, 2A0121, H+ Antiporter protein	4e-05
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	7e-05
PRK10473	392	PRK10473, PRK10473, multidrug efflux system protei	1e-04
PRK11102	377	PRK11102, PRK11102, bicyclomycin/multidrug efflux	1e-04
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	2e-04
PRK11043	401	PRK11043, PRK11043, putative transporter; Provisio	7e-04
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	8e-04
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	0.002
COG0738	422	COG0738, FucP, Fucose permease [Carbohydrate trans	0.003
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	0.004

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 96.3 bits (240), Expect = 6e-22
 Identities = 80/384 (20%), Positives = 142/384 (36%), Gaps = 40/384 (10%)

Query: 46  IWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGL 104
           +++      L  S L P L  ++ +D  I+       +  G + ++F  G AL     G 
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISP------TEIGLLLTAFSLGYALAQPLAGR 54

Query: 105 VADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIF 163
           ++DR+GR+ V+++G     +   L   + + W+ ++ R L G   G L P   A   + F
Sbjct: 55  LSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWF 114

Query: 164 REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS 223
             E +   L  +S  +G+G  +GP LGG LA        LF   + F      L  L + 
Sbjct: 115 PPEERGRALGLLSAGFGLGAALGPLLGGLLAS-------LFGWRAAF----LILAILALL 163

Query: 224 LFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYC 283
                  L      +                 +E         K LL++  L   + +  
Sbjct: 164 AAVLAALLLPRPPPE----------SKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLL 213

Query: 284 VFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG 343
                       F+L    P     L  S  + G +L + G    + +L L    +R+ G
Sbjct: 214 FGFA-------FFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRL-G 265

Query: 344 PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAV 403
                 +A +L I        +++        +   A ++    +  +   L  L +   
Sbjct: 266 RRRRLLLALLLLILAALGLALLSLTESSLWLLV---ALLLLGFGAGLVFPALNALVSDLA 322

Query: 404 DQDQRGAANGIAMTGMSLFKAAGP 427
            +++RG A+G+  T  SL  A GP
Sbjct: 323 PKEERGTASGLYNTAGSLGGALGP 346

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 85.1 bits (211), Expect = 5e-18
 Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 7/154 (4%)

Query: 43  LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFW 102
           L  +++    + L    L P L  + +D  ++       S AG + S+F  G AL S+  
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSA------SQAGLIVSAFSLGYALGSLLA 54

Query: 103 GLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIK-AYACE 161
           G ++DR+GR+ V+++G     + + L   + + W+ ++ RFLLG   G L P   A   E
Sbjct: 55  GYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAE 114

Query: 162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
            F  + +   L   S  +G+G ++GP LGG LA+
Sbjct: 115 WFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE 148

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 1/111 (0%)

Query: 84  AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF 143
            G++ S+ + G A  ++F+G +ADR GR+ V++       +F  L  L+ N    ++ RF
Sbjct: 54  LGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRF 113

Query: 144 LLG-SLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193
           L G  L GL+  + A   E   +  +   +  +   + IG  +G  L G+L
Sbjct: 114 LAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL 164

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional

 Score = 64.2 bits (156), Expect = 4e-11
 Identities = 53/184 (28%), Positives = 80/184 (43%), Gaps = 9/184 (4%)

Query: 47  WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSVFWGLV 105
           W+    T    S + PFL   ++   +      +  ++G V S +F+F  A+ S FWG +
Sbjct: 20  WLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSA-LNMWSGLVFSITFLFS-AIASPFWGGL 77

Query: 106 ADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFRE 165
           ADR GRK +++     + I   L GL+ N W  ++ R LLG L G +    A        
Sbjct: 78  ADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPR 137

Query: 166 EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLF 225
                 L T+ST    G ++GP  GG LA      P  F + S+         C  ++LF
Sbjct: 138 NKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASV------LFLCFLVTLF 191

Query: 226 AFGE 229
              E
Sbjct: 192 CIRE 195

Length = 408

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 63.4 bits (155), Expect = 8e-11
 Identities = 75/403 (18%), Positives = 132/403 (32%), Gaps = 71/403 (17%)

Query: 84  AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF 143
           AG + +++  G AL +    L+  R  R+ +++   A  ++ N L  L+ +F + +L R 
Sbjct: 50  AGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARA 109

Query: 144 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN 202
           L G  +G+   I  A A  +     +   L+ V T   +  ++G  LG FL Q       
Sbjct: 110 LAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ------- 162

Query: 203 LFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGRE 262
                 LFG    FL    ++L A                     L        E  G  
Sbjct: 163 ------LFGWRATFLAIAVLALLAL-------------------LLLWKLLPPSEISGSL 197

Query: 263 ATPKK---SLLKNWPLMSSIIVY-CVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGE 318
             P +    LL+   ++  ++      + H   Y+ I       P       +S   V  
Sbjct: 198 PGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYI------RPFLESVAGFSVSAVSL 251

Query: 319 VLAITGF-----SLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGL 373
           VL   G      +LL  +L+      R L   ++     +L +    + P +A+   F  
Sbjct: 252 VLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLW 310

Query: 374 AFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL 433
            F  + A                  +   +  D    A  + +   +L  A G A GG +
Sbjct: 311 GFAFSPALQG------------LQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLV 358

Query: 434 FSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRH 476
                         G     +V   +  + +L+        R 
Sbjct: 359 LDAL----------GYAATGWVGAALLLLALLLALLSARKDRR 391

Length = 394

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 1/108 (0%)

Query: 89  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL 148
           + +  G+ + S   GL+ DR+GRKPV+++G    V+   +F LS N  + ++ RFL G  
Sbjct: 5   AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFG 64

Query: 149 NGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
                    A   +I+  E + + L  +S    +G ++GP LGG LAQ
Sbjct: 65  AAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ 112

Length = 141

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 4/155 (2%)

Query: 43  LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFW 102
           L  + ++ L   L     +  L ++    Q         + AG + S F  G  L ++  
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSA--AEAGLLLSLFGLGGILGALLG 231

Query: 103 GLVADRYGRKPVIIM-GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLL-GPIKAYAC 160
           GL++DR GR+ ++++ G     +   L  L+ +  + ++   LLG   G     +   A 
Sbjct: 232 GLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLAS 291

Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           E+   E +       +T   +G  +GP L G L  
Sbjct: 292 ELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD 326

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 19/58 (32%), Positives = 32/58 (55%)

Query: 89  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG 146
           S F  G  L S  +G ++DR+GRK V+++ T    +   L   S N+ + ++ R L+G
Sbjct: 134 SCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVG 191

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 53.8 bits (129), Expect = 9e-08
 Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 10/159 (6%)

Query: 43  LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFW 102
           LFS W+  +        +F  +Y +  D  +   E        ++ ++   GR      +
Sbjct: 20  LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDME------GAFLATAAFIGRPFGGALF 73

Query: 103 GLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG-SLNGLLGPIKAYACE 161
           GL+AD++GRKP+++    +  +   L GL+    M  L+RF++G  + G       YA E
Sbjct: 74  GLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVE 133

Query: 162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY 200
            + +  ++   + + + +GIG II      F+   AE Y
Sbjct: 134 SWPKHLKSKASAFLVSGFGIGNIIAAY---FMPSFAEAY 169

Length = 426

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 4/94 (4%)

Query: 57  ISSLFPFLYFMIKDFQIAKREEDIGS--YAGYVGSSFMFGRALTSVFWGLVADRYGRKPV 114
           I +    + F  +   +        S   +G + S F  G  + S+F G + DR+GRK  
Sbjct: 19  IGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKS 78

Query: 115 IIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLG 146
           +++G    VI   L G +   +F+M ++ R ++G
Sbjct: 79  LLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVG 112

Length = 449

>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 10/123 (8%)

Query: 81  GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII-------MGTASVVIFNTLFGLSV 133
            S       + M    + S   G +ADRY RK V+I       +  A +     L GL++
Sbjct: 33  ASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNI 92

Query: 134 NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF 192
             W   +   +L        P  +A   ++  EE      S       +  I+GP +GG 
Sbjct: 93  --WQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGL 150

Query: 193 LAQ 195
           +  
Sbjct: 151 MYA 153

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 365

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 45.3 bits (108), Expect = 7e-05
 Identities = 87/405 (21%), Positives = 143/405 (35%), Gaps = 92/405 (22%)

Query: 97  LTSVFWGLVADRYGRKPVI-IMGTASVVI--FNTLFGLSVNFWMAVLTRFLLGSLNGLLG 153
           L S   G +AD++ +  VI I+    V +     L      FW+A    FLLG+ + +  
Sbjct: 62  LLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYS 121

Query: 154 PIKA-YACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGK 212
           P K     E+  +E+ +     +     + ++ G AL  FL +         ++ S    
Sbjct: 122 PAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE--SVNG---NTPSEILG 176

Query: 213 FPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPK------ 266
                  + +   A    +            +Y  L    A   E   ++          
Sbjct: 177 RIAPAGLVLL-AVAVLGLI-----------FAY-RLPKVPAAAPEVFDKKKYLFPKLLWR 223

Query: 267 --KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSP---KKLGGLNYSTQMVGEVLA 321
             K L  +  L  +II    F       S++    AN P   K++ GL+ +T  V  +LA
Sbjct: 224 NLKLLRSDRVLWLAIIGLSYF----WFISQL--AQANFPAYAKEVLGLD-NTFQVQYLLA 276

Query: 322 ITGFSLLVFQLSLYPFLERILGPIMVARIAG----VLTIPL----LTSYPYIAMLSGFGL 373
            +   +              +G ++  R++G    +  +PL    L        LS F L
Sbjct: 277 ASAIGI-------------GIGSLLAGRLSGRHIELGLVPLGALGLA-------LSLFLL 316

Query: 374 AFLLNCASVVKNLLSVSIITGLFI------LQNRAVDQDQRG----AANGIAMTGMSLFK 423
               + ASV+          GLFI      +Q RA  + + G    A N +   GM LF 
Sbjct: 317 PTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRA-PEKELGKVLAANNFLQNVGMLLFL 375

Query: 424 AAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF 468
           A        LFS     L          +F+++ +V  IG L T 
Sbjct: 376 AL-----TTLFSGLG--LSP------AGLFYLIALVTLIGTLYTL 407

Length = 1146

>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL; Provisional

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 23/59 (38%), Positives = 32/59 (54%)

Query: 89  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS 147
           S ++ G A   +F G +ADR GRKPV I G A  +I + L  L+    + +  RFL G 
Sbjct: 45  SVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGI 103

Length = 392

>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system; Provisional

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 6/51 (11%)

Query: 72  QIAKREEDIGSYAGYVG---SSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119
            IA    D G  AG V    S+++ G A+  +F+G +AD +GRKPVI+ GT
Sbjct: 16  VIAA---DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGT 63

Length = 377

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 13/120 (10%)

Query: 82  SYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV----IIMGTASVVIFNTLFGLSVNFWM 137
           S A   G+ F FG  + S+ +G +ADR G +      ++    +V++ +TLF  ++   +
Sbjct: 285 SLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLL 344

Query: 138 AVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIG---LIIGPALGGFLA 194
             +  F    +NG    + A     +    +A G   V  A GIG    IIGP L G+L 
Sbjct: 345 GAIAGFF---VNGGQSGLYALMALFYPTAIRATG---VGWAIGIGRLGAIIGPILAGYLL 398

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional

 Score = 41.4 bits (98), Expect = 7e-04
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 3/45 (6%)

Query: 77  EEDIGSYAGYVGSS---FMFGRALTSVFWGLVADRYGRKPVIIMG 118
           + D+ + A  V +S   F+ G AL  + WG ++DRYGRKPV++ G
Sbjct: 33  QADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAG 77

Length = 401

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 41.5 bits (98), Expect = 8e-04
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 85  GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFL 144
           G+  S+ + G    ++  G +ADR GRK ++I+  A   +F+     + +F   ++ R L
Sbjct: 53  GWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLL 112

Query: 145 LG 146
            G
Sbjct: 113 TG 114

Length = 406

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 8/125 (6%)

Query: 71  FQIAKREEDI---GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP--VIIMGTASVVIF 125
           F +   E+D+    S  G +G     G  + + FWG +AD+ GRK   +I +       F
Sbjct: 188 FVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAF 247

Query: 126 NTLFGLSVNFWMAVLTRFLLG-SLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLI 184
            + F     F++    R L G  + G +  + +Y  E   +E +   LS +   W IG I
Sbjct: 248 FSSFVQGYGFFL--FCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGI 305

Query: 185 IGPAL 189
              A+
Sbjct: 306 YAAAM 310

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism]

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 16/158 (10%)

Query: 40  ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTS 99
           +T LF +W  + C       L P L    + F +   E      A  +  +F  G  + S
Sbjct: 18  LTSLFFLWGFITCL---NDILIPHL---KEVFDLTYFE------ASLIQFAFFGGYFIMS 65

Query: 100 VFWGLVADRYGRKPVIIMGTASVVIFNTLFG---LSVNFWMAVLTRFLLGSLNGLL-GPI 155
           +  GL+  + G K  I++G     +   LF     S ++   ++  F+L S  GLL    
Sbjct: 66  LPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAA 125

Query: 156 KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193
             Y   + + E  A  L+      G+G I+GP LG  L
Sbjct: 126 NPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSL 163

Length = 422

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query: 57  ISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII 116
           I        F    F  A  +    S  G V S F+ G  + ++F G ++DR+GRK  ++
Sbjct: 47  IGGALALPAFE-FKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLL 105

Query: 117 MGTASVV---IFNTLFGLSVNFWMAVLTRFLLG 146
           +     V   I   L   +++  M ++ R LLG
Sbjct: 106 IIALLFVIGAILMGLAAFALSVEMLIVGRVLLG 138

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	477
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
PRK05122	399	major facilitator superfamily transporter; Provisi	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
PRK03633	381	putative MFS family transporter protein; Provision	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
PRK03699	394	putative transporter; Provisional	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
TIGR00900	365	2A0121 H+ Antiporter protein.	100.0
PRK10504	471	putative transporter; Provisional	100.0
PRK12382	392	putative transporter; Provisional	100.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	100.0
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	100.0
TIGR00897	402	2A0118 polyol permease family. This family of prot	100.0
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	100.0
PRK11195	393	lysophospholipid transporter LplT; Provisional	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	100.0
PRK09874	408	drug efflux system protein MdtG; Provisional	100.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
KOG2615	451	consensus Permease of the major facilitator superf	100.0
PRK15075	434	citrate-proton symporter; Provisional	100.0
PRK10133	438	L-fucose transporter; Provisional	100.0
PRK11646	400	multidrug resistance protein MdtH; Provisional	100.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	100.0
PRK03893	496	putative sialic acid transporter; Provisional	100.0
TIGR00892	455	2A0113 monocarboxylate transporter 1.	100.0
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
PRK10054	395	putative transporter; Provisional	100.0
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	100.0
PRK15403	413	multidrug efflux system protein MdtM; Provisional	100.0
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	100.0
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	100.0
KOG0569	485	consensus Permease of the major facilitator superf	100.0
PRK11043	401	putative transporter; Provisional	100.0
TIGR00895	398	2A0115 benzoate transport.	100.0
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	100.0
KOG1330	493	consensus Sugar transporter/spinster transmembrane	100.0
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	100.0
PRK11652	394	emrD multidrug resistance protein D; Provisional	100.0
PRK10473	392	multidrug efflux system protein MdtL; Provisional	100.0
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	100.0
PRK15011	393	sugar efflux transporter B; Provisional	100.0
PRK11010	491	ampG muropeptide transporter; Validated	100.0
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	100.0
TIGR00896	355	CynX cyanate transporter. This family of proteins	100.0
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.98
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.98
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.98
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.98
KOG2532	466	consensus Permease of the major facilitator superf	99.97
PRK09528	420	lacY galactoside permease; Reviewed	99.97
PRK11902	402	ampG muropeptide transporter; Reviewed	99.97
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.97
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.97
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.97
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.97
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.97
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.97
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.96
KOG0254	513	consensus Predicted transporter (major facilitator	99.96
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.96
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.96
KOG2533	495	consensus Permease of the major facilitator superf	99.96
TIGR00805	633	oat sodium-independent organic anion transporter.	99.96
TIGR00901	356	2A0125 AmpG-related permease.	99.96
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.96
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.96
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.95
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.95
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.95
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.95
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.94
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.94
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.94
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.93
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.93
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.93
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.92
PTZ00207	591	hypothetical protein; Provisional	99.92
PRK09669	444	putative symporter YagG; Provisional	99.91
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.91
PRK10429	473	melibiose:sodium symporter; Provisional	99.91
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.9
PRK09848	448	glucuronide transporter; Provisional	99.9
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.89
PF13347	428	MFS_2: MFS/sugar transport protein	99.88
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.87
COG2211	467	MelB Na+/melibiose symporter and related transport	99.86
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.86
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.85
PRK11462	460	putative transporter; Provisional	99.85
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.84
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.84
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.82
KOG2563	480	consensus Permease of the major facilitator superf	99.82
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.72
KOG3626	735	consensus Organic anion transporter [Secondary met	99.71
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.59
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.59
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.59
PRK10642	490	proline/glycine betaine transporter; Provisional	99.57
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.54
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.54
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.54
PRK15011	393	sugar efflux transporter B; Provisional	99.54
PRK10054	395	putative transporter; Provisional	99.52
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.51
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.51
PRK09528	420	lacY galactoside permease; Reviewed	99.5
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.5
PRK05122	399	major facilitator superfamily transporter; Provisi	99.49
PRK11663	434	regulatory protein UhpC; Provisional	99.48
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.48
PRK09705	393	cynX putative cyanate transporter; Provisional	99.48
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.47
TIGR00900	365	2A0121 H+ Antiporter protein.	99.46
PRK10489	417	enterobactin exporter EntS; Provisional	99.46
PRK09874	408	drug efflux system protein MdtG; Provisional	99.46
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.46
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.44
PRK03699	394	putative transporter; Provisional	99.44
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.44
PRK12382	392	putative transporter; Provisional	99.43
PRK03545	390	putative arabinose transporter; Provisional	99.43
PRK03893	496	putative sialic acid transporter; Provisional	99.43
PRK10091	382	MFS transport protein AraJ; Provisional	99.42
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.42
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.41
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.41
TIGR00893	399	2A0114 d-galactonate transporter.	99.41
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.41
TIGR00895	398	2A0115 benzoate transport.	99.41
PRK10504	471	putative transporter; Provisional	99.4
PRK03633	381	putative MFS family transporter protein; Provision	99.4
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.4
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.39
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.39
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	99.38
PLN00028	476	nitrate transmembrane transporter; Provisional	99.38
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.38
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.37
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.37
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.37
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.37
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.36
TIGR00891	405	2A0112 putative sialic acid transporter.	99.36
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.35
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.35
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.34
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.34
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.33
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.33
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.32
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.32
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.32
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.32
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.31
PRK09952	438	shikimate transporter; Provisional	99.31
PRK11043	401	putative transporter; Provisional	99.31
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.3
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.3
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.3
PRK12307	426	putative sialic acid transporter; Provisional	99.29
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.29
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.28
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.27
KOG0637	498	consensus Sucrose transporter and related proteins	99.26
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.26
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.25
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.24
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.22
PRK15075	434	citrate-proton symporter; Provisional	99.22
PRK11010	491	ampG muropeptide transporter; Validated	99.22
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.2
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	99.2
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.19
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.19
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.18
PRK10133	438	L-fucose transporter; Provisional	99.18
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.17
KOG0569	485	consensus Permease of the major facilitator superf	99.16
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.16
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.15
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.15
KOG3098	461	consensus Uncharacterized conserved protein [Funct	99.15
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.13
KOG3762	618	consensus Predicted transporter [General function	99.13
TIGR00901	356	2A0125 AmpG-related permease.	99.13
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.12
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.12
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.12
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.11
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.11
TIGR00898	505	2A0119 cation transport protein.	99.1
PF13347	428	MFS_2: MFS/sugar transport protein	99.1
PRK11902	402	ampG muropeptide transporter; Reviewed	99.1
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	99.1
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.1
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.06
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	99.04
TIGR00805	633	oat sodium-independent organic anion transporter.	99.03
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	99.02
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.0
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.99
PTZ00207	591	hypothetical protein; Provisional	98.99
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.98
PRK10429	473	melibiose:sodium symporter; Provisional	98.98
PRK09848	448	glucuronide transporter; Provisional	98.96
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.94
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.94
KOG2615	451	consensus Permease of the major facilitator superf	98.92
KOG2532	466	consensus Permease of the major facilitator superf	98.91
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.91
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.88
COG0477	338	ProP Permeases of the major facilitator superfamil	98.87
PRK09669	444	putative symporter YagG; Provisional	98.86
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.86
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.8
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.74
PRK11462	460	putative transporter; Provisional	98.73
COG2211	467	MelB Na+/melibiose symporter and related transport	98.72
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.7
KOG2533	495	consensus Permease of the major facilitator superf	98.69
KOG0254	513	consensus Predicted transporter (major facilitator	98.65
KOG3762	618	consensus Predicted transporter [General function	98.64
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.62
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.6
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.59
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	98.55
PF12832	77	MFS_1_like: MFS_1 like family	98.5
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.46
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	98.41
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.37
KOG3810	433	consensus Micronutrient transporters (folate trans	98.34
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.27
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.25
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.23
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.2
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.18
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.12
KOG2563	480	consensus Permease of the major facilitator superf	98.02
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	97.89
PF12832	77	MFS_1_like: MFS_1 like family	97.87
COG3202	509	ATP/ADP translocase [Energy production and convers	97.85
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	97.8
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.8
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.57
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	97.53
KOG3880	409	consensus Predicted small molecule transporter inv	97.53
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.52
KOG3097	390	consensus Predicted membrane protein [Function unk	97.47
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.44
PRK03612	521	spermidine synthase; Provisional	97.44
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.41
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.4
COG0477	338	ProP Permeases of the major facilitator superfamil	97.26
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.09
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.03
KOG3626	735	consensus Organic anion transporter [Secondary met	96.85
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.49
PRK03612	521	spermidine synthase; Provisional	96.47
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.4
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.26
KOG3098	461	consensus Uncharacterized conserved protein [Funct	95.78
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	95.74
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	95.46
KOG0637	498	consensus Sucrose transporter and related proteins	95.29
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	95.27
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	93.75
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	93.01
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	92.65
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	91.75
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	88.37
KOG3880	409	consensus Predicted small molecule transporter inv	87.26
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	87.19
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	86.9
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	86.53
PRK11469	188	hypothetical protein; Provisional	83.15

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.1e-39  Score=291.18  Aligned_cols=379  Identities=19%  Similarity=0.194  Sum_probs=308.1

Q ss_pred             CCCchhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhh
Q 011783           36 SGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVI  115 (477)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~  115 (477)
                      ++..+..++.+.++.|.......+....+|++.+|+|.|..+      .|+..|+|.+++.++.|+...++||+.||+++
T Consensus         8 ~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~------aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lL   81 (394)
T COG2814           8 RKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGA------AGQLITAYALGVALGAPLLALLTGRLERRRLL   81 (394)
T ss_pred             cccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence            445567788899999999999999999999999999999999      99999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhh
Q 011783          116 IMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (477)
Q Consensus       116 ~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (477)
                      +..+.++.++++++++++||+.++++|++.|+..|.+.+. .++.+|..|+++|++++++...+..++.++|.++|.++.
T Consensus        82 l~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig  161 (394)
T COG2814          82 LGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLG  161 (394)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHH
Confidence            9999999999999999999999999999999999998888 999999999999999999999999999999999999999


Q ss_pred             hccccCCcccccccccccccch-HHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcch
Q 011783          195 QPAEKYPNLFSSESLFGKFPYF-LPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNW  273 (477)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (477)
                      +       .+|||..|...... +...+.....+|  ++..+++                     +..+..+..+++|+|
T Consensus       162 ~-------~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~---------------------~~~~~~~~~~~l~~p  211 (394)
T COG2814         162 Q-------LFGWRATFLAIAVLALLALLLLWKLLP--PSEISGS---------------------LPGPLRTLLRLLRRP  211 (394)
T ss_pred             H-------HhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCC---------------------CCcchhHHHHHhcCc
Confidence            9       78898888421111 122222333444  1111111                     111223466789999


Q ss_pred             hhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 011783          274 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV  353 (477)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  353 (477)
                      .++...+..++....++..+++...++++.     .|++....++.+..++++.++++. ++|++.|| +.++.+.....
T Consensus       212 ~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v-----~g~s~~~vs~~Ll~~Gv~~~~Gn~-~gGrl~dr-~~~~~l~~~~~  284 (394)
T COG2814         212 GVLLGLLATFLFMTGHFALYTYIRPFLESV-----AGFSVSAVSLVLLAFGIAGFIGNL-LGGRLADR-GPRRALIAALL  284 (394)
T ss_pred             hHHHHHHHHHHHHcchhhhHHhHHHHHHHc-----cCCCHhHHHHHHHHHHHHHHHHHH-HHhhhccc-cchhHHHHHHH
Confidence            999999999988888888877777676655     899999999999999999999999 99999999 88888888877


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHH
Q 011783          354 LTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL  433 (477)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l  433 (477)
                      +..+.++.+.+.....    + ......++.++..............+ .-+|.++.+.+++....++|..+|..++|.+
T Consensus       285 l~a~~~l~l~~~~~~~----~-~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v  358 (394)
T COG2814         285 LLALALLALTFTGASP----A-LALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLV  358 (394)
T ss_pred             HHHHHHHHHHHhcchH----H-HHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777666555422    1 22222222344444444444444445 3358899999999999999999999999999


Q ss_pred             HHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhhhhhh
Q 011783          434 FSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLA  473 (477)
Q Consensus       434 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  473 (477)
                      +|+.          |+....++.+++.+++.++.+.....
T Consensus       359 ~~~~----------g~~~~~~~~a~l~~~a~~~~~~~~~~  388 (394)
T COG2814         359 LDAL----------GYAATGWVGAALLLLALLLALLSARK  388 (394)
T ss_pred             HHhh----------chHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9997          89999999999999998887764333

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=3.1e-38  Score=307.16  Aligned_cols=408  Identities=14%  Similarity=0.043  Sum_probs=278.3

Q ss_pred             hHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHH
Q 011783           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (477)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~  120 (477)
                      +.+..+++..++.++++..+++..|.+.+|+|.+..+      .|++.+++.+++.+++++.|+++||+|||+++..+.+
T Consensus        29 ~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~  102 (467)
T PRK09556         29 QSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTE------LGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLI  102 (467)
T ss_pred             HHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHH
Confidence            3455677777888889999999999999999999999      9999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHh-----hhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhh
Q 011783          121 SVVIFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (477)
Q Consensus       121 ~~~i~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (477)
                      ++++..++.++     ++|++.+++.|+++|++.+...|. .++++|++|+++|++++|+...+.++|.++++++..++.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~  182 (467)
T PRK09556        103 LSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGA  182 (467)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHH
Confidence            88877776665     589999999999999999888887 899999999999999999999999999999999987766


Q ss_pred             hccccCCcccccccccccccc-hHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCc-hhhhhhcc
Q 011783          195 QPAEKYPNLFSSESLFGKFPY-FLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT-PKKSLLKN  272 (477)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  272 (477)
                      +....    -+|+..|..... .+...+..++..++.++..+..++++ ...+....+.++.++++..... ..+..+|+
T Consensus       183 ~~~~~----~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  257 (467)
T PRK09556        183 NYFFD----GHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEE-IFGEPISEEDKETESTDMTKWQIFVEYVLKN  257 (467)
T ss_pred             Hhhcc----CcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhh-cccCccchhhhccccccCcHHHHHHHHHHcC
Confidence            53110    024433311011 11112222233344433221111100 0000000000000000000011 12337899


Q ss_pred             hhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 011783          273 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  352 (477)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  352 (477)
                      |.+|...+..++..........+.|.|+.+.     +|+++.+.+.......++.+++.+ +.++++||+++|+......
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~-----~g~s~~~a~~~~~~~~~~~~ig~~-~~G~lsDr~g~r~~~~~~~  331 (467)
T PRK09556        258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQE-----LGFSKEDAINTFTLFEIGALVGSL-LWGWLSDLANGRRALVACI  331 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCchHHHHH
Confidence            9999888888877777777778889888654     899999999999989999999988 9999999999888766544


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHH-HHHHhhhHHH
Q 011783          353 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSL-FKAAGPAGGG  431 (477)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~~~~~~g  431 (477)
                      .+..++....... ...+  .. ...+..+..+++..+..........|.+|++.+|++.|+.+...++ |.+++|.+.|
T Consensus       332 ~~~~~~~~~~~~~-~~~~--~~-~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G  407 (467)
T PRK09556        332 ALALIIFTLGVYQ-HATS--EY-MYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLG  407 (467)
T ss_pred             HHHHHHHHHHHHH-hcCc--HH-HHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHH
Confidence            4333332222221 1111  11 1112222223222222333345667999999999999999999997 7799999999


Q ss_pred             HHHHH-hhhhc-cccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          432 ALFSW-AQKRL-DASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       432 ~l~~~-~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      .+.|. ..... ......||+..|.+..++.+++.+..+.
T Consensus       408 ~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        408 MIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI  447 (467)
T ss_pred             HHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence            99982 10000 0000127999999988888887766554

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.5e-38  Score=281.51  Aligned_cols=397  Identities=19%  Similarity=0.152  Sum_probs=305.9

Q ss_pred             CCCCchhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchh
Q 011783           35 KSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV  114 (477)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~  114 (477)
                      .++.+++.+..+++++...++.+-.++...|.+.+|.++|.+|      .|++.+++.+.|.++..+.|.++||.+.|+.
T Consensus        23 y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~------lG~i~s~f~i~YG~sKf~~G~~sDr~npr~f   96 (448)
T COG2271          23 YKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQ------LGILGSAFSITYGVSKFVMGVLSDRSNPRYF   96 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHhhhhcccCCCcee
Confidence            3455556677888999999999999999999999999999999      9999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHH--H
Q 011783          115 IIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG--G  191 (477)
Q Consensus       115 ~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--~  191 (477)
                      +..++++.++..++++++++.+.+.+.-+++|+++|+-.|. ...++.|+|++|||+..++++.+.++|..+.|++.  +
T Consensus        97 m~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la  176 (448)
T COG2271          97 MAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLA  176 (448)
T ss_pred             ehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHH
Confidence            99999999999999999999999999999999999997766 99999999999999999999999999999999999  7


Q ss_pred             HhhhccccCCcccccccccccccch--HHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccC-----Cc
Q 011783          192 FLAQPAEKYPNLFSSESLFGKFPYF--LPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGRE-----AT  264 (477)
Q Consensus       192 ~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~  264 (477)
                      ++..       .++||..| ..+-.  ++..+..+..+.++|+..--++-|+-+. +..+..    +++++++     ..
T Consensus       177 ~~~~-------~~~w~~~f-~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~-d~~e~~----~~~~~~~~ls~~~i  243 (448)
T COG2271         177 FFAF-------HGGWRAAF-YFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRG-DPLEIY----EEEKENEGLTAWQI  243 (448)
T ss_pred             HHHh-------ccchhHHH-HHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhc-Cchhhh----hhhccCCCccHHHH
Confidence            7776       34666665 22222  2222333344455554432211111000 111110    1111111     12


Q ss_pred             hhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--
Q 011783          265 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL--  342 (477)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~--  342 (477)
                      -.+.+++||.+|.+.+.+.+....-++...+.|+|+.+.     .|+|..+++...+.+-++++.+.+ +.||++||.  
T Consensus       244 ~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~-----k~~s~~~a~~a~~lfE~agl~G~L-l~GwlSDklfk  317 (448)
T COG2271         244 FVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEV-----KGFSLVKANWAISLFEVAGLPGTL-LAGWLSDKLFK  317 (448)
T ss_pred             HHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh-----cCCCHHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcc
Confidence            456688999999999999999999999999999999876     899999999999999999999998 999999996  


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHH-
Q 011783          343 GPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSL-  421 (477)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-  421 (477)
                      |||....+...+.....+...+.....   ......++.+..|++..+..-..-....|..|++..|++.|+...+.++ 
T Consensus       318 grR~p~~~i~~~~i~~~~~~~w~~~~~---~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~  394 (448)
T COG2271         318 GRRGPMALIFMLLITASLVLYWLAPNG---SYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLI  394 (448)
T ss_pred             cccchHHHHHHHHHHHHHHHHHcCCCc---cHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHh
Confidence            455554444433333333322222211   2233344444445555555556666788999999999999999999999 


Q ss_pred             HHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          422 FKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       422 g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      |.+.+....|++.|.+          ||...|++..+.++++.++.+.
T Consensus       395 Ga~~a~~~~g~i~d~~----------gW~g~Fi~~~~~a~l~~lll~~  432 (448)
T COG2271         395 GAALAGLPLGYIADTW----------GWDGGFIVLSIAALLAILLLLP  432 (448)
T ss_pred             hHHhcCCcceeeEecC----------CCcchHHHHHHHHHHHHHHHHH
Confidence            8899999999998886          8989999888888877776655

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=8.6e-37  Score=294.24  Aligned_cols=395  Identities=14%  Similarity=0.094  Sum_probs=276.9

Q ss_pred             hhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHH
Q 011783           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (477)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~  119 (477)
                      ++.+....+..++.+++...+...+|.+.+++|.+..+      .|++.+.+.+++.+++++.|+++||+|||+++.++.
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~   95 (434)
T PRK11663         22 RHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSD------IGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGL   95 (434)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHH
Confidence            34455667777777888888899999999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccc
Q 011783          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (477)
Q Consensus       120 ~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  198 (477)
                      ++.+++.+++++++|++.+++.|++.|++.|...+. .+++.|++|+++|++++++.+.+.++|..++|.+++++.+   
T Consensus        96 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~---  172 (434)
T PRK11663         96 IATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL---  172 (434)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            999999999999999999999999999998887777 9999999999999999999999999999999999999887   


Q ss_pred             cCCcccccccccccccch-HHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchh-hhhhcchhhH
Q 011783          199 KYPNLFSSESLFGKFPYF-LPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPK-KSLLKNWPLM  276 (477)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  276 (477)
                          .++||+.|...... ....+...+.++|++.+...++.+..+. ++.+.. .+.+.++.+..... ...++++.++
T Consensus       173 ----~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  246 (434)
T PRK11663        173 ----HYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH-DALELA-QQQEGAGLSRKEILTKYVLLNPYIW  246 (434)
T ss_pred             ----cccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc-cccccc-hhccccCCChhhhHHHHHhcChHHH
Confidence                45566555211111 1122223344566554321111000000 000000 00000000111111 2356788888


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--cchhHH-HHHHH
Q 011783          277 SSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL--GPIMVA-RIAGV  353 (477)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~-~~~~~  353 (477)
                      ...+..++..........+.|.|+.+.     +|++..+.+...+...++..++++ +.+++.||+  ++|+.. .....
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~a~~~~~~~~~~~~~g~~-~~g~l~dr~~~~~r~~~~~~~~~  320 (434)
T PRK11663        247 LLSFSYVLVYVVRAAINDWGNLYMSET-----LGVDLVTANSAVSMFELGGFIGAL-VAGWGSDKLFNGNRGPMNLIFAA  320 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHHHH-HHhhhHHHhccCCccHHHHHHHH
Confidence            877776666666666777888887543     799999999999999999999998 999999998  333222 22111


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHH
Q 011783          354 LTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL  433 (477)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l  433 (477)
                      ...+....+..... .+  .... ....+..+++.............|..|++.|+++.|+.++..++|++++|.+.|.+
T Consensus       321 ~~~~~~~~~~~~~~-~~--~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l  396 (434)
T PRK11663        321 GILLSVGSLWLMPF-AS--YVMQ-AACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKV  396 (434)
T ss_pred             HHHHHHHHHHHccc-cc--HHHH-HHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHH
Confidence            11111111111111 11  1111 11112122222222233345667889999999999999999999999999999999


Q ss_pred             HHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          434 FSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       434 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      .|+.          ||+..|++.+++.+++.+..+.
T Consensus       397 ~~~~----------g~~~~f~~~~~~~~~~~~~~~~  422 (434)
T PRK11663        397 LEIW----------HWTGFFVVISIAAGISALLLLP  422 (434)
T ss_pred             HHhc----------ccHHHHHHHHHHHHHHHHHHHH
Confidence            9987          8889999998888887765554

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=3e-36  Score=287.08  Aligned_cols=370  Identities=14%  Similarity=0.090  Sum_probs=271.5

Q ss_pred             chhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHH
Q 011783           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (477)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~  118 (477)
                      +|..++.+.+..++.........+.+|.+.+|+|.++++      .|++.+.+.+++.+++++.|+++||+|||+++..+
T Consensus         7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~   80 (390)
T PRK03545          7 AWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQ------VGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGL   80 (390)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence            344455555555555445555667789999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhcc
Q 011783          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (477)
Q Consensus       119 ~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  197 (477)
                      .++.+++.+.+++++|++++++.|+++|++.+...+. .+++.|++|+|+|++++++...+.++|..+||++++.+.+  
T Consensus        81 ~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~--  158 (390)
T PRK03545         81 FVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQ--  158 (390)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH--
Confidence            9999999999999999999999999999999888887 9999999999999999999999999999999999999887  


Q ss_pred             ccCCcccccccccccccchHH-HHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhH
Q 011783          198 EKYPNLFSSESLFGKFPYFLP-CLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLM  276 (477)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (477)
                           .++||+.|........ ........+||.++      ++.+                   ..+..++.+|+|.++
T Consensus       159 -----~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~------~~~~-------------------~~~~~~~~~~~~~~~  208 (390)
T PRK03545        159 -----YLGWRTTFLAIGGGALITLLLLIKLLPLLPS------EHSG-------------------SLKSLPLLFRRPALV  208 (390)
T ss_pred             -----HhcHHHHHHHHHHHHHHHHHHHHHhCCCCCC------CCcc-------------------hHHHHHHHHhCcHHH
Confidence                 4566655521111111 11111122232211      0000                   012345678888887


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 011783          277 SSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTI  356 (477)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  356 (477)
                      ......++..........+.+.+..+.     .|.++.+.+.+....+++.++++. +.+++.||.++|... .+..+..
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~g~s~~~~~~~~~~~~~~~~~g~~-~~g~l~dr~~~~~~~-~~~~~~~  281 (390)
T PRK03545        209 SLYLLTVVVVTAHFTAYSYIEPFVQQV-----AGLSENFATLLLLLFGGAGIIGSV-LFSRLGNRHPSGFLL-IAIALLL  281 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCccHHHHHHHHHHHHHHHHHH-HHHHHhhccchhHHH-HHHHHHH
Confidence            665555544444444444555554432     688899999999999999999988 889999999877654 3433333


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHH
Q 011783          357 PLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSW  436 (477)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  436 (477)
                      .....+.....  +.  + .+....++.+++.....+.......+..| +.+++++|+.+...++|..+||.+.|.+.++
T Consensus       282 ~~~~~l~~~~~--~~--~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~  355 (390)
T PRK03545        282 VCLLLLLPAAN--SE--W-HLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLH  355 (390)
T ss_pred             HHHHHHHHHhc--hH--H-HHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33322221111  11  1 22223333444545555666677777666 6889999999999999999999999999998


Q ss_pred             hhhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          437 AQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       437 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      .          |++..|.+.+++.+++.+..+.
T Consensus       356 ~----------g~~~~~~~~~~~~~~~~~~~~~  378 (390)
T PRK03545        356 L----------GLSSIGYVGAALALAALVWSIL  378 (390)
T ss_pred             c----------ChhHHHHHHHHHHHHHHHHHHH
Confidence            8          8999999999888888777665

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=3.5e-36  Score=299.01  Aligned_cols=410  Identities=16%  Similarity=0.111  Sum_probs=287.8

Q ss_pred             hhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHH
Q 011783           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (477)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~  119 (477)
                      |..+.++.++.+...++...+...+|.+.++++.+..+      .+++.+++.++.+++++++|+++||+|||+++++++
T Consensus       166 ~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~------~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~l  239 (742)
T TIGR01299       166 WALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSG------KGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICL  239 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            33344556666777778888899999999999999998      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccc
Q 011783          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (477)
Q Consensus       120 ~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  198 (477)
                      ++.+++.++++++++++.++++|++.|++.|...|. .+++.|++|+++|++.++++..++.+|.++++.++..+... .
T Consensus       240 il~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~-~  318 (742)
T TIGR01299       240 SVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPH-Y  318 (742)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence            999999999999999999999999999998888787 99999999999999999999999999999999998777652 3


Q ss_pred             cCCc-------ccccccccccccchHHHHHHHHHhhccccccCCCCCC--ccchhhhhhhhh------------------
Q 011783          199 KYPN-------LFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDD--SCDVSYDALESA------------------  251 (477)
Q Consensus       199 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~------------------  251 (477)
                      +|+.       ..+||..+.......+..++..+++||+|++...+.+  +..+..++....                  
T Consensus       319 G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~  398 (742)
T TIGR01299       319 GWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIK  398 (742)
T ss_pred             cchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHH
Confidence            3332       1346665532222233344555678999887432211  111110110000                  


Q ss_pred             --hccc---h-hhcccC----------------CchhhhhhcchhhHH---HHHHHHHHHhhhhhhHHHHHHhhcCc---
Q 011783          252 --SAEV---K-EEEGRE----------------ATPKKSLLKNWPLMS---SIIVYCVFSLHDMAYSEIFSLWANSP---  303 (477)
Q Consensus       252 --~~~~---~-~~~~~~----------------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---  303 (477)
                        ....   + +.+...                ....+.+++.+....   ..+.+++..+..++...++|..+...   
T Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~  478 (742)
T TIGR01299       399 TIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQAD  478 (742)
T ss_pred             HhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              0000   0 000000                012344555544333   34445555556666667777543210   


Q ss_pred             -c------------cC-------C-------cc------cc---------------------------------------
Q 011783          304 -K------------KL-------G-------GL------NY---------------------------------------  311 (477)
Q Consensus       304 -~------------~~-------~-------~~------g~---------------------------------------  311 (477)
                       +            ..       +       ++      |+                                       
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~  558 (742)
T TIGR01299       479 DYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFEN  558 (742)
T ss_pred             HHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccc
Confidence             0            00       0       00      00                                       


Q ss_pred             ---------------------------c-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 011783          312 ---------------------------S-------TQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIP  357 (477)
Q Consensus       312 ---------------------------~-------~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  357 (477)
                                                 +       .........+..++.+++.+ +.+++.||+|||+++..+.++.++
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~i-l~g~L~Dr~GRr~~l~~~~~lsai  637 (742)
T TIGR01299       559 TDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNI-VSALLMDKIGRLRMLAGSMVLSCI  637 (742)
T ss_pred             cchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHH
Confidence                                       0       01123345566678888887 999999999999999999888888


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHh
Q 011783          358 LLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWA  437 (477)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  437 (477)
                      +++++.+.....      .+++..++.+++..+..+..+.+++|.+|++.|++++|+.+....+|.+++|.++|.+.+..
T Consensus       638 ~~ll~~~~~s~~------~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~  711 (742)
T TIGR01299       638 SCFFLSFGNSES------AMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGIT  711 (742)
T ss_pred             HHHHHHHHccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            877666543211      12222234455666778888999999999999999999999999999999999999888653


Q ss_pred             hhhccccCCCCchHHHHHHHHHHHHHHHHHhhhhhhccC
Q 011783          438 QKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRH  476 (477)
Q Consensus       438 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (477)
                                 ...+|++.+++.+++.++.++  +||++
T Consensus       712 -----------~~~pf~i~a~~lll~~ll~~~--LPET~  737 (742)
T TIGR01299       712 -----------KAAPILFASAALACGGLLALK--LPDTR  737 (742)
T ss_pred             -----------hHHHHHHHHHHHHHHHHHHHh--CCCCc
Confidence                       446788888877777776665  67765

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=7.3e-36  Score=292.12  Aligned_cols=375  Identities=15%  Similarity=0.075  Sum_probs=286.7

Q ss_pred             hhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHH
Q 011783           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (477)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~  119 (477)
                      |..+..++++.++..++.++++..+|.+.+|+|.+.++      .+|+.++|.+++.++++++|+++||+|||++++.+.
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~------~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~   78 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNE------LLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGG   78 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            45677889999999999999999999999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhc-cccchhhHHHHHHHHhHHHHHHHHhHHHHhhhcc
Q 011783          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIF-REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (477)
Q Consensus       120 ~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  197 (477)
                      +++.++++++++++|+++++++|+++|++.+...|. ...+.+.+ |+++|+++++++.....+|..+||.+++++.+  
T Consensus        79 ~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~--  156 (495)
T PRK14995         79 TLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE--  156 (495)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Confidence            999999999999999999999999999999888887 77777765 68999999999999999999999999999998  


Q ss_pred             ccCCcccccccccc-cccchHHHHHHHHHhhccccccCCCCCCccchhh------------hhhhhhh-cc---------
Q 011783          198 EKYPNLFSSESLFG-KFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSY------------DALESAS-AE---------  254 (477)
Q Consensus       198 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~---------  254 (477)
                           .++||+.|. ..+..++..++....+|+.+..++++.+......            ++..... ..         
T Consensus       157 -----~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  231 (495)
T PRK14995        157 -----HFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLT  231 (495)
T ss_pred             -----cCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence                 345555542 1222233333444555654332111111100000            0000000 00         


Q ss_pred             ---------chhhcccCCchhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHH
Q 011783          255 ---------VKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGF  325 (477)
Q Consensus       255 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~  325 (477)
                               ..|.+.+.+....+++|+|.+....+..++..........+.|.|++..     +|+++.++|..+.+..+
T Consensus       232 ~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v-----~g~s~~~ag~~~~~~~~  306 (495)
T PRK14995        232 GALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFV-----HGLSPLEAGMFMLPVMV  306 (495)
T ss_pred             HHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHH
Confidence                     0112223334446788999888877777776666666667778777755     79999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCc
Q 011783          326 SLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQ  405 (477)
Q Consensus       326 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (477)
                      +..++.+ +.+++.||+|+|+.+..+..+..++...+.......+.  + .......+.+++.+...+.......+.+|+
T Consensus       307 ~~~~~~~-~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~--~-~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~  382 (495)
T PRK14995        307 ASGFSGP-IAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQ--W-QAWGLMALLGFSAASALLASTSAIMAAAPP  382 (495)
T ss_pred             HHHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCch--H-HHHHHHHHHHHhHHHHHHHHHHHHHhcCCH
Confidence            9999988 89999999999998888887777666555443221111  1 122334445666777777778888888999


Q ss_pred             chhhHHhHHHHHHHHHHHHHhhhHHHHHHHH
Q 011783          406 DQRGAANGIAMTGMSLFKAAGPAGGGALFSW  436 (477)
Q Consensus       406 ~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  436 (477)
                      ++++.+.++.++.+++|+.+|+.+.|.++++
T Consensus       383 ~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        383 EKAAAAGAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999875

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=7e-37  Score=292.38  Aligned_cols=396  Identities=13%  Similarity=0.043  Sum_probs=276.7

Q ss_pred             CCchhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhH
Q 011783           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (477)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~  116 (477)
                      +.+|+.+..+++..++++++...++...|.+.+|+|.+..+      .|++.+++.+++.+++++.|+++||+|||+++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~   77 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATM------FGLAATLFYAAYVICGIPSNIMLAIIGARRWIA   77 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHH------HHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHH
Confidence            34567788888899999999999999999999999999999      999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhh
Q 011783          117 MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (477)
Q Consensus       117 ~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (477)
                      .+.++++++.+++++++|++++++.|+++|++.+...|. ..++.|++|+++|++++++++.+.++|..+++++++++.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~  157 (412)
T TIGR02332        78 GIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILA  157 (412)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999998888 8899999999999999999999999999999999998874


Q ss_pred             ccccCCcccccccccccccc-hHHHHHHHHHhhccccccCCCC-CCccchhhhhhhhhh---ccchhh--ccc--CCchh
Q 011783          196 PAEKYPNLFSSESLFGKFPY-FLPCLCISLFAFGETLHRHNDD-DDSCDVSYDALESAS---AEVKEE--EGR--EATPK  266 (477)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~--~~~--~~~~~  266 (477)
                      ... .-...+||+.|..... .+...++..+++||+++..+.. +++.+...+..+.+.   ++.++.  +.+  ....+
T Consensus       158 ~~~-~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (412)
T TIGR02332       158 LDG-LMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSML  236 (412)
T ss_pred             CCC-CCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHH
Confidence            210 0002345544421111 1222233344567776532211 111111000000000   000000  000  01123


Q ss_pred             hhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 011783          267 KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM  346 (477)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  346 (477)
                      ++++ ++.++...+.+++.......+..+.|.++.+.    +.+.+..+.+.......++.+++.+ +.++++||+++|+
T Consensus       237 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----~~~~s~~~~~~~~~~~~l~~~~g~l-~~g~l~dr~~~r~  310 (412)
T TIGR02332       237 REIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSF----NQGSSNIMIGLLAAIPQFCTIFGMI-WWSRHSDRLKERK  310 (412)
T ss_pred             HHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCcHHHhHHHhhHHHHHHHHHHH-HHHHHhcccCccH
Confidence            3333 57777777777777777777888889888641    2467788889999999999999988 9999999998766


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHH
Q 011783          347 V-ARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAA  425 (477)
Q Consensus       347 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~  425 (477)
                      . ......+..+++... ...  ... ......+...  .++.....+.......+.+|++.|+++.|+.+...++|+++
T Consensus       311 ~~~~~~~~~~~~~~~~~-~~~--~~~-~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~  384 (412)
T TIGR02332       311 HHTALPYLFAAAGWLLA-SAT--DHN-LIQLLGIIMA--SMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSAL  384 (412)
T ss_pred             HHHHHHHHHHHHHHHHH-Hhc--CCH-HHHHHHHHHH--HHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhh
Confidence            4 333333333332211 111  111 1111111111  12222223333445567789999999999999999999999


Q ss_pred             hhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHH
Q 011783          426 GPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVE  460 (477)
Q Consensus       426 ~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~  460 (477)
                      +|.+.|.+.+..         ++|+..+.+.+++.
T Consensus       385 ~p~~~g~i~~~~---------g~~~~~~~~~~~~~  410 (412)
T TIGR02332       385 SPFLIGILKDAT---------GSFNSGLWFVAALL  410 (412)
T ss_pred             hhhhcccccccC---------CCCchhHHHHHHHH
Confidence            999999999876         14778887766544

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=4.5e-36  Score=287.94  Aligned_cols=378  Identities=18%  Similarity=0.094  Sum_probs=277.3

Q ss_pred             CchhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHH
Q 011783           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (477)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~  117 (477)
                      ++|..+...++..+++.++.....+..|.+.+|+|.++++      .|++.+++.++..+++++.|+++||+|||+++..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   85 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQ------MGWAFSAGILGLLPGALLGGRLADRIGRKRILIV   85 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence            4455677778888999999999999999999999999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhc
Q 011783          118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (477)
Q Consensus       118 ~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  196 (477)
                      +.++..++.++++++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|..+++.+++.+.+ 
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-  164 (406)
T PRK11551         86 SVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAG-  164 (406)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-
Confidence            99999999999999999999999999999998888887 9999999999999999999999999999999999888766 


Q ss_pred             cccCCcccccccccccccc-hHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhc---c
Q 011783          197 AEKYPNLFSSESLFGKFPY-FLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK---N  272 (477)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  272 (477)
                            .++|+..+..... .....+.....+||++++.++++++.+                +   +...+..++   +
T Consensus       165 ------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----------------~---~~~~~~~~~~~~~  219 (406)
T PRK11551        165 ------DAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQ----------------R---APVLRALFGEGRA  219 (406)
T ss_pred             ------ccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchh----------------h---hhhHHHHhhhhhh
Confidence                  4455554421111 111222233345665543221110000                0   001111111   1


Q ss_pred             hhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 011783          273 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  352 (477)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  352 (477)
                      +..+......++..........+.|.+..+      .|+++.+.+.......++.+++++ +.+++.||.++|+.+..+.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g~~~~~~~~~  292 (406)
T PRK11551        220 TATLLLWISYFFTLIVLYFLLNWLPSLLVG------QGLSRSQAGLVQIAFNIGGALGSL-LIGALMDRLRPRRVVLLIY  292 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCChhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHH
Confidence            222222233333333334445566666543      688999999999999999999988 8999999999999888766


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHH
Q 011783          353 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA  432 (477)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~  432 (477)
                      ....+++..+.....   .  + ......++.+++..+..+...++..+.+|+++|+++.|+.+....+|..++|.+.|.
T Consensus       293 ~~~~~~~~~~~~~~~---~--~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~  366 (406)
T PRK11551        293 AGILASLAALAAAPS---F--A-GMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQ  366 (406)
T ss_pred             HHHHHHHHHHHhcCc---H--H-HHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhh
Confidence            655555444433221   1  1 122233444555566777888899999999999999999999999999999999999


Q ss_pred             HHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          433 LFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       433 l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      +.++..         ++...++....+.+++.++.+.
T Consensus       367 l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK11551        367 LLALGR---------STVGVIGASIPVILVAALAALL  394 (406)
T ss_pred             hhccCC---------chHHHHHHHHHHHHHHHHHHHH
Confidence            998641         4555666666666665555544

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=3.3e-36  Score=288.47  Aligned_cols=388  Identities=16%  Similarity=0.105  Sum_probs=279.8

Q ss_pred             HHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHH
Q 011783           50 VLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF  129 (477)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~  129 (477)
                      .++..++...+....|.+.+++|.++.+      .|++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~   76 (399)
T TIGR00893         3 TVINYLDRANLSFAAPMLQEDLGLSAAQ------YGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQ   76 (399)
T ss_pred             ehHHHHHHHhhhHhHHHHHHhhCCChhh------HHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHH
Confidence            3456778888889999999999999999      9999999999999999999999999999999999999999999999


Q ss_pred             HhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCccccccc
Q 011783          130 GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSES  208 (477)
Q Consensus       130 ~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~  208 (477)
                      ++++|++.+++.|++.|++.+...+. .+++.|++|+|+|++++++.+....+|..++|.+++.+.+       ..+|+.
T Consensus        77 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~~~~~  149 (399)
T TIGR00893        77 AFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI-------HFSWQW  149 (399)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH-------hCCchH
Confidence            99999999999999999999988887 9999999999999999999999999999999999998887       334544


Q ss_pred             ccccccch-HHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHHHHHHHHh
Q 011783          209 LFGKFPYF-LPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSL  287 (477)
Q Consensus       209 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (477)
                      .+...... ....+...+..+|+++.++..+++.+....+....+.+.++++++.....++.+++|+++...+..++...
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (399)
T TIGR00893       150 AFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNI  229 (399)
T ss_pred             HHHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHh
Confidence            44111111 11112222234444332211111111000000000001111122334456788899999988888888887


Q ss_pred             hhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH--HHHHHHHHHH--HHHHHH
Q 011783          288 HDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV--ARIAGVLTIP--LLTSYP  363 (477)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~--~~~~~~  363 (477)
                      ....+..+.|.|..+.     +|.++.+.+.......++.+++.+ +.+++.||+++|+.  ..........  ......
T Consensus       230 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (399)
T TIGR00893       230 GLGFFLTWFPTYLVQE-----RGLSILEAGFMASLPGIVGFIGMI-LGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLM  303 (399)
T ss_pred             HHHHHHHHHHHHHHHH-----hcccHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Confidence            7778888888887654     788899999999999999999988 89999999998851  1111111111  111111


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccc
Q 011783          364 YIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDA  443 (477)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~  443 (477)
                      ....... ..+ ....... .+.+..+..+...++..|.+|+++|+++.|+.+....+|..++|.+.|.+.+..      
T Consensus       304 ~~~~~~~-~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~------  374 (399)
T TIGR00893       304 FATNYVN-IPY-AALALVA-LGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT------  374 (399)
T ss_pred             HHhccch-hHH-HHHHHHH-HHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC------
Confidence            1111001 111 1111122 223333477888899999999999999999999999999999999999999876      


Q ss_pred             cCCCC-chHHHHHHHHHHHHHHHHHhh
Q 011783          444 SFLPG-SQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       444 ~~~~g-~~~~~~~~~~~~~~~~~~~~~  469 (477)
                          | ++..|.+.+++.+++.+..+.
T Consensus       375 ----g~~~~~~~~~~~~~~~~~~~~~~  397 (399)
T TIGR00893       375 ----GSFAGALMVVAALALIGALSYLL  397 (399)
T ss_pred             ----CchhHHHHHHHHHHHHHHHHHHH
Confidence                6 888888888887777666543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=6.5e-36  Score=279.61  Aligned_cols=355  Identities=14%  Similarity=0.065  Sum_probs=251.9

Q ss_pred             hhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhh
Q 011783           53 TALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS  132 (477)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~  132 (477)
                      +......+.+.+|.+.+|+|.++.+      .|++.+++.+++.+++++.|+++||+|||+++..+......+.......
T Consensus         3 ~~~~~~~~~~~lp~i~~~~~~s~~~------~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~   76 (368)
T TIGR00903         3 SQAIWVTFSPVLSLVAEDIDVSKEE------LGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDP   76 (368)
T ss_pred             hhHHHHHHHhhHHHHHHHhCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHh
Confidence            3445567889999999999999999      9999999999999999999999999999998766655555544433334


Q ss_pred             hhHHHHHHHHHHhhhcccchhhHHHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCccccccccccc
Q 011783          133 VNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGK  212 (477)
Q Consensus       133 ~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~  212 (477)
                      +|++++++.|+++|++.+...+....++|++|+|+|++++++.+.+..+|.++++++++++.+       .++||..|..
T Consensus        77 ~~~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~-------~~gWr~~f~~  149 (368)
T TIGR00903        77 FNYEWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT-------AGGLQLLIIP  149 (368)
T ss_pred             ccHHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------ccchHHHHHH
Confidence            799999999999999988765556777999999999999999999999999999999999987       4556655521


Q ss_pred             -ccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHHHHHHHHhhhhh
Q 011783          213 -FPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMA  291 (477)
Q Consensus       213 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (477)
                       ....++..++....+||++++++++   .+.               + +....+++++|+|.+|...+.+++.......
T Consensus       150 ~~~l~~~~~~~~~~~lp~~p~~~~~~---~~~---------------~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~  210 (368)
T TIGR00903       150 IAAVAAAGIILVLAALPALPFQAAEG---FGF---------------K-DAVKEFGALAGRKDLWIIGAILGFGVALFDN  210 (368)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCCCCC---cch---------------H-HHHHHHHHHHcChhHHHHHHHHHHHHHHHHH
Confidence             1111222333445667765432110   000               0 0012467899999999999999998888889


Q ss_pred             hHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcch---hHHH-HHHHHHHHHHHHHHHHHH
Q 011783          292 YSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI---MVAR-IAGVLTIPLLTSYPYIAM  367 (477)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~  367 (477)
                      +..+.|.|+.+      .|++.. .+.......+.+.++    .+++.||.+|+   +... ....+..+.+..+.... 
T Consensus       211 ~~~wlp~~L~~------~g~s~~-~~~~~~l~~~~g~~g----~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~-  278 (368)
T TIGR00903       211 LAIWLEAALRP------AGLEDI-AGDAVALAILAGLIG----VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFEL-  278 (368)
T ss_pred             HHHHHHHHHHH------CCCChH-HHHHHHHHHHHHHHH----HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcc-
Confidence            99999999864      456654 565555555555554    35666665433   3222 22322232222222111 


Q ss_pred             hhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCC
Q 011783          368 LSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLP  447 (477)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  447 (477)
                        +  .... .....+.+++.....+..+++.+|.+|++.||++.|+.+..+++++..+|.+.+.+..            
T Consensus       279 --~--~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~------------  341 (368)
T TIGR00903       279 --N--RLAL-FAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS------------  341 (368)
T ss_pred             --c--cHHH-HHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc------------
Confidence              1  1111 2222333455566667788899999999999999999999999999999999988872            


Q ss_pred             CchHHHHHHHHHHHHHHHHHh
Q 011783          448 GSQMVFFVLNVVEAIGVLMTF  468 (477)
Q Consensus       448 g~~~~~~~~~~~~~~~~~~~~  468 (477)
                      |.+..|.+.++..+++.+...
T Consensus       342 ~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       342 SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             CHHHHHHHHHHHHHHHHHHHH
Confidence            344677777888777777654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=2e-35  Score=280.93  Aligned_cols=358  Identities=13%  Similarity=0.065  Sum_probs=267.1

Q ss_pred             hchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhhhhHHH
Q 011783           58 SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM  137 (477)
Q Consensus        58 ~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~  137 (477)
                      ....+.+|.+.+|+|.|.++      .|++.+.+.+++.+++++.|+++||+|||+++..+..+++++.+.+++++|++.
T Consensus        26 ~~~~~~lp~i~~~~~~s~~~------~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~   99 (393)
T PRK09705         26 TSVGPLLPQLRQASGMSFSV------AALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSAL   99 (393)
T ss_pred             hccchhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHH
Confidence            66789999999999999999      999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCcccccccccccccch
Q 011783          138 AVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYF  216 (477)
Q Consensus       138 l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  216 (477)
                      +++.|+++|++.+...+. .+++.|++| ++|+++++.+..+..+|..+|+.+++++.++..+||+.+.+-        .
T Consensus       100 ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~--------~  170 (393)
T PRK09705        100 LLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWW--------A  170 (393)
T ss_pred             HHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH--------H
Confidence            999999999999988877 889999997 889999999999999999999999999887533454433221        1


Q ss_pred             HHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHHHHHHHHhhhhhhHHHH
Q 011783          217 LPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIF  296 (477)
Q Consensus       217 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (477)
                      +...+.....++..++.++  +++.+                +    ...++.++++..+......++..........+.
T Consensus       171 ~~~~~~~~~~~~~~~~~~~--~~~~~----------------~----~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l  228 (393)
T PRK09705        171 LPAVVALFAWWWQSAREVA--SSHKT----------------T----TTPVRVVFTPRAWTLGVYFGLINGGYASLIAWL  228 (393)
T ss_pred             HHHHHHHHHHHHHhcCCCc--cccCC----------------C----cCCcccccCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111111222222111110  00000                0    112345567777776666666666666777777


Q ss_pred             HHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 011783          297 SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFL  376 (477)
Q Consensus       297 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (477)
                      |.|+.+      +|+++.+.+...+..+++.++++. +.+++.||.++|+....+..+..++...+......  . ....
T Consensus       229 p~~l~~------~g~s~~~ag~~~~~~~i~~i~g~~-~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~--~-~~~~  298 (393)
T PRK09705        229 PAFYIE------IGASAQYSGSLLALMTLGQAAGAL-LMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQ--L-PVLW  298 (393)
T ss_pred             HHHHHH------cCCChhhhhHHHHHHHHHHHHHHH-HHHHHHhhccchHHHHHHHHHHHHHHHHHHHccch--H-HHHH
Confidence            777653      688999999999999999999998 88999999999998888877766665544332221  1 1111


Q ss_pred             HHHHHHHHhhhhHHHHhHHHHHHhhcC-CcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHH
Q 011783          377 LNCASVVKNLLSVSIITGLFILQNRAV-DQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFV  455 (477)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~  455 (477)
                      .    .+.+++.+...+.......+.. |++++++++|+.+...+++..++|.+.|++.|+.+         ++...|.+
T Consensus       299 ~----~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g---------~~~~~~~~  365 (393)
T PRK09705        299 A----MVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG---------NYLMDWAF  365 (393)
T ss_pred             H----HHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CchHHHHH
Confidence            1    1123344455555555555555 46789999999999999999999999999999872         36778888


Q ss_pred             HHHHHHHHHHHHhhhhhhccC
Q 011783          456 LNVVEAIGVLMTFKPFLAQRH  476 (477)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~  476 (477)
                      .++++++..++... ..||++
T Consensus       366 ~~~~~~~~~~~~~~-~~~~~~  385 (393)
T PRK09705        366 HALCVVGLMIITLR-FAPARF  385 (393)
T ss_pred             HHHHHHHHHHHHHH-hccccc
Confidence            87777777666544 456554

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=1.9e-35  Score=285.57  Aligned_cols=362  Identities=15%  Similarity=0.179  Sum_probs=262.2

Q ss_pred             CchhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHH
Q 011783           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (477)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~  117 (477)
                      .+++.+...++..+.+.++.....+.+|.+.+++|.++.+      .+++.+++.+++.+++++.|+++||+|||+++.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~------~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~   88 (426)
T PRK12307         15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDME------GAFLATAAFIGRPFGGALFGLLADKFGRKPLMMW   88 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence            4456677888888899999999999999999999999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhc
Q 011783          118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (477)
Q Consensus       118 ~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  196 (477)
                      +.++.+++.++++++++++.+++.|+++|++.+...+. ..++.|++|+|+|+++.++...+..+|.++++.+.+.+.+ 
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~-  167 (426)
T PRK12307         89 SIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE-  167 (426)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc-
Confidence            99999999999999999999999999999998887777 9999999999999999999999999999999999888876 


Q ss_pred             cccCCcccccccccccccchHHHHHHHHHhh----ccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcc
Q 011783          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAF----GETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  272 (477)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (477)
                            .++|+..+..    .....+..+.+    ||++++.+++.          +++.++.++.........++++++
T Consensus       168 ------~~~w~~~f~i----~~~~~~~~~~~~~~~p~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  227 (426)
T PRK12307        168 ------AYGWRAAFFV----GLLPVLLVIYIRARAPESKEWEEAKL----------SGKGKHSQSAWSVFSLSMKGLFNR  227 (426)
T ss_pred             ------cCCHHHHHHH----HHHHHHHHHHHHHHCCCChHHHHhhh----------hccccccccchhhhhHHHHHHHhh
Confidence                  4556655511    11111111222    22211100000          000000000001112246678888


Q ss_pred             hhhHHHHHHHHHHH---hhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Q 011783          273 WPLMSSIIVYCVFS---LHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  349 (477)
Q Consensus       273 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  349 (477)
                      +.++..........   ........+.|.|..+      .|+++.+.+...+...++.+++++ +.+++.||++||+...
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~g~~-~~g~l~dr~~~~~~~~  300 (426)
T PRK12307        228 AQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG------EGFDTGVVSNLMTAAAFGTVLGNI-VWGLCADRIGLKKTFS  300 (426)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHH
Confidence            87765443332222   2222345566766653      588888999999999999999988 8999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhH
Q 011783          350 IAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAG  429 (477)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~  429 (477)
                      .+.++..+..+.+.....  .........  .+..++...+..+....++.|.+|++.||+++|+.+....+++.++|.+
T Consensus       301 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~  376 (426)
T PRK12307        301 IGLLMSFLFIFPLFRIPQ--DNYLLLGAC--LFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMA  376 (426)
T ss_pred             HHHHHHHHHHHHHHHHcc--ccHHHHHHH--HHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHH
Confidence            887766555443332221  111111111  1111122222334455677899999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 011783          430 GGALFSWA  437 (477)
Q Consensus       430 ~g~l~~~~  437 (477)
                      .|++.+..
T Consensus       377 ~g~l~~~~  384 (426)
T PRK12307        377 ATWLGITM  384 (426)
T ss_pred             HHHHHHcc
Confidence            99999887

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=7.7e-35  Score=280.70  Aligned_cols=386  Identities=13%  Similarity=0.074  Sum_probs=251.0

Q ss_pred             hhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcc---cccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhH
Q 011783           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQI---AKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (477)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~  116 (477)
                      ++.+...+++.+++.+|...+....|.+.+|++.   +..+   ....+.+.+...++..++++++|+++||+|||+++.
T Consensus        21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~   97 (432)
T PRK10406         21 IWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQ---LLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSML   97 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            3445566778899999999999999999999863   3332   001333445555666699999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhHH--------HHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHH
Q 011783          117 MGTASVVIFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGP  187 (477)
Q Consensus       117 ~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  187 (477)
                      .+.++++++++++++++++.        ++++.|+++|++.|...|. .++++|++|+++|+++.++.+.+...|..+++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~  177 (432)
T PRK10406         98 ISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLAL  177 (432)
T ss_pred             HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988764        6899999999999998887 99999999999999999999988889988888


Q ss_pred             hHHHHhhhccccC-CcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchh
Q 011783          188 ALGGFLAQPAEKY-PNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPK  266 (477)
Q Consensus       188 ~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (477)
                      .+...+.....+- -..++||..|.......+........+||+++.      +.+                +.++..+.
T Consensus       178 ~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~------~~~----------------~~~~~~~~  235 (432)
T PRK10406        178 LVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQ------ETR----------------ALKEAGSL  235 (432)
T ss_pred             HHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchH------HHh----------------hhcccccH
Confidence            7766554311000 002466665510000011111111112222110      000                00112246


Q ss_pred             hhhhcchhhHHHHHHHHHH-HhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 011783          267 KSLLKNWPLMSSIIVYCVF-SLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  345 (477)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  345 (477)
                      ++++|+++.+...+...+. ......+..+.|.|+.+.     +|++..+.+.......+...+++. +.+++.||++||
T Consensus       236 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-----~g~s~~~~~~~~~i~~~~~~i~~~-~~G~l~Dr~grr  309 (432)
T PRK10406        236 KGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNT-----AGMHANVASGIMTAALFVFMLIQP-LIGALSDKIGRR  309 (432)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCch
Confidence            6788888877655544432 444556667778777543     688888888888888888888887 779999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHH-HH
Q 011783          346 MVARIAGVLTIPLLTSYPY-IAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSL-FK  423 (477)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~  423 (477)
                      +....+..+..+....+.. .......  ...+. ...+..+..+...+....+.+|.+|++.|+++.|+.+...+. .+
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g  386 (432)
T PRK10406        310 TSMLCFGSLAALFTVPILSALQNVSSP--YAAFG-LVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFG  386 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcH--HHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHH
Confidence            8877665543333221111 1111111  11111 111111222233345667889999999999999999987664 34


Q ss_pred             HHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          424 AAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       424 ~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      ...|.+.+.+ +..+         .+...+++.+++.+++.+..++
T Consensus       387 ~~~p~~~~~l-~~~g---------~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        387 GSAEYVALSL-KSIG---------METAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             hHHHHHHHHH-HHhC---------CCcHHHHHHHHHHHHHHHHHHH
Confidence            4577777744 5441         2555666666666666665554

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=3.9e-35  Score=281.83  Aligned_cols=379  Identities=15%  Similarity=0.133  Sum_probs=262.7

Q ss_pred             CCCchhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhh
Q 011783           36 SGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVI  115 (477)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~  115 (477)
                      ++.+|+.+..++++.+.+.++.....+..|.+.+++|.++.+      .|++.+++.++..+++++.|+++||+|||+++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~   80 (405)
T TIGR00891         7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVD------AASLISAALISRWFGALMFGLWGDRYGRRLPM   80 (405)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            345667788899999999999999999999999999999999      99999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhh
Q 011783          116 IMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (477)
Q Consensus       116 ~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (477)
                      ..+.++.+++.++++++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|..+++.+++.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~  160 (405)
T TIGR00891        81 VTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVV  160 (405)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888887 999999999999999999999999999999999999988


Q ss_pred             hccccCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcc---cCCchhhhhhc
Q 011783          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEG---REATPKKSLLK  271 (477)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  271 (477)
                      +...     .+|+..+................+||+++++++++++.+ ..+..++...+....+.   +.....++..+
T Consensus       161 ~~~~-----~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (405)
T TIGR00891       161 PVWG-----DGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKAL-VRTMVDILYGGEHRIANIVMTLAAAMVQSAG  234 (405)
T ss_pred             HhcC-----ccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhh-hhhHHHHHhccchhhhhhhhhhhHHhhhhhh
Confidence            7321     124444411111111122222334554332111111000 00000000000000000   00001111111


Q ss_pred             -chh-hHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Q 011783          272 -NWP-LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  349 (477)
Q Consensus       272 -~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  349 (477)
                       ++. +........+..........++|.|..+.     +|++..+.+.+.....++.+++.+ +.+++.||+++|+.+.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~~~~~~~~~~~~~g~~-~~g~l~dr~g~~~~~~  308 (405)
T TIGR00891       235 KRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKAD-----LGLSPHTVANIVVFSNIGAIVGGC-VFGFLGDWLGRRKAYV  308 (405)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCchhhhH
Confidence             111 12222222222333334445566665533     789999999999999999999988 8999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhH
Q 011783          350 IAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAG  429 (477)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~  429 (477)
                      .+..+..+........ . ..  .+ .......+.+++.....+....++.|.+|+++|++++|+.+...++|..++|.+
T Consensus       309 ~~~~~~~~~~~~~~~~-~-~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~  383 (405)
T TIGR00891       309 CSLLAGQLLIIPVFAI-G-AN--VA-VLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPII  383 (405)
T ss_pred             HHHHHHHHHHHHHHHh-C-Cc--hH-HHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHH
Confidence            7766543332222111 1 11  11 122222223344455566677788999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 011783          430 GGALFSWA  437 (477)
Q Consensus       430 ~g~l~~~~  437 (477)
                      .|.+.|+.
T Consensus       384 ~g~l~~~~  391 (405)
T TIGR00891       384 GALLAQRL  391 (405)
T ss_pred             HHHHHHhc
Confidence            99999987

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=3.6e-34  Score=272.05  Aligned_cols=366  Identities=17%  Similarity=0.169  Sum_probs=265.6

Q ss_pred             chhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHH
Q 011783           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (477)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~  118 (477)
                      .|+.+..+....+..........+.+|.+.+|+|.++++      .|+..+++.++..+++++.|+++||+|||+++..+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~   91 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGV------AGQSVTVTAFVAMFASLFITQTIQATDRRYVVILF   91 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHH
Confidence            455555555555555556567777889999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhcc
Q 011783          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (477)
Q Consensus       119 ~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  197 (477)
                      .++.+++.+++++++|++++++.|+++|++.+...+. .+++.|++|+|+|++++++...+.++|..+||++++.+.+  
T Consensus        92 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~--  169 (394)
T PRK10213         92 AVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE--  169 (394)
T ss_pred             HHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence            9999999999999999999999999999999988887 9999999999999999999999999999999999999988  


Q ss_pred             ccCCcccccccccccccchHHHHH-HHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhH
Q 011783          198 EKYPNLFSSESLFGKFPYFLPCLC-ISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLM  276 (477)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (477)
                           .++||..|........... ......||.++     +++                    +.....++.+|+|.++
T Consensus       170 -----~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~-----~~~--------------------~~~~~~~~~l~~~~~~  219 (394)
T PRK10213        170 -----LIGWRNVFNAAAVMGVLCIFWIIKSLPSLPG-----EPS--------------------HQKQNTFRLLQRPGVM  219 (394)
T ss_pred             -----hcCHHHHHHHHHHHHHHHHHHHHHHCCCCCc-----ccc--------------------cchhHHHHHhcCHHHH
Confidence                 4566655521111111111 11112233210     000                    0011345678888888


Q ss_pred             HHHHHHHHHHhhhhhhHHHH-HHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 011783          277 SSIIVYCVFSLHDMAYSEIF-SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLT  355 (477)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  355 (477)
                      ...+..++..........+. |.|..+      +|+++.+.+......+++.+++.. +.+++.||.+ ++.+..+..+.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~g~~~~~~~~~~iig~~-~~~~l~~r~~-~~~l~~~~~~~  291 (394)
T PRK10213        220 AGMIAIFMSFAGQFAFFTYIRPVYMNL------AGFGVDGLTLVLLSFGIASFVGTS-LSSFILKRSV-KLALAGAPLVL  291 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCChhHHHHHHHHHHHHHHHHHH-HHHHHHhccc-hhHHHHHHHHH
Confidence            77665555544444444444 444432      789999999999999999999987 8899999854 44433333332


Q ss_pred             HHH-HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHH
Q 011783          356 IPL-LTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALF  434 (477)
Q Consensus       356 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  434 (477)
                      .+. +.+......     .+ .+....++.+++.....+...+.+++..| ++++++.+......++|..+||.++|.++
T Consensus       292 ~~~~~~l~~~~~~-----~~-~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~  364 (394)
T PRK10213        292 AVSALVLTLWGSD-----KI-VATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYAL  364 (394)
T ss_pred             HHHHHHHHHHhhh-----HH-HHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322 232222211     12 22233444556667777777778888787 55778888888888999999999999999


Q ss_pred             HHhhhhccccCCCCchHHHHHHHHHHHHHHHHH
Q 011783          435 SWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT  467 (477)
Q Consensus       435 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  467 (477)
                      |..          |+...+...+++.++..+..
T Consensus       365 ~~~----------g~~~~~~~~~~~~~~~~~~~  387 (394)
T PRK10213        365 DNI----------GLTSPLMLSGTLMLLTALLV  387 (394)
T ss_pred             hcc----------ChhhHHHHHHHHHHHHHHHH
Confidence            987          77778888776655554433

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=1.9e-34  Score=281.98  Aligned_cols=404  Identities=14%  Similarity=0.070  Sum_probs=260.6

Q ss_pred             hhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHH-HHHHHHHHHHHHhhhhhhhhhhcCCchhhHHH
Q 011783           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGY-VGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (477)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~-~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~  118 (477)
                      ++.+....++.+++.+|..++....|.+.++++.+.++.. +....+ +.++..+++.+++++.|+++||+|||+++.++
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~   93 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSV-QMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAIT   93 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            3456677889999999999999999999999976554310 110111 25788899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhHHH--------HHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhH
Q 011783          119 TASVVIFNTLFGLSVNFWM--------AVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPAL  189 (477)
Q Consensus       119 ~~~~~i~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  189 (477)
                      .++++++++++++++|+++        +++.|+++|++.|...+. .++++|++|+++|++..++...+..+|..+|+.+
T Consensus        94 ~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~  173 (490)
T PRK10642         94 IVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGV  173 (490)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999875        899999999999988887 9999999999999999999998888898888877


Q ss_pred             HHHhhhccccC-CcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhh
Q 011783          190 GGFLAQPAEKY-PNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS  268 (477)
Q Consensus       190 ~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (477)
                      ...+.....+. -..++||..|.......+..+.....+||++++.+.+++..+        ...+..  +++.+.+.++
T Consensus       174 ~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~--------~~~~~~--~~~~~~~~~~  243 (490)
T PRK10642        174 VVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQ--------GDREGL--QDGPKVSFKE  243 (490)
T ss_pred             HHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhh--------hccccc--cccccCCHHH
Confidence            66554311000 002466666521111111122222345666543211100000        000000  0111223455


Q ss_pred             hhcc-hhhHH-HHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 011783          269 LLKN-WPLMS-SIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM  346 (477)
Q Consensus       269 ~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  346 (477)
                      ++++ +..+. .....++.....+....+.|.|+...     +|++..+.+.......++..++.+ +.+++.||+|||+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~grr~  317 (490)
T PRK10642        244 IATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHN-----LHYSEDHGVLIIIAIMIGMLFVQP-VMGLLSDRFGRRP  317 (490)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccHH
Confidence            5543 22222 22222333344555666777777543     678887777777777788888877 8899999999999


Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHH
Q 011783          347 VARIAGVLTIPLLTS-YPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAA  425 (477)
Q Consensus       347 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~  425 (477)
                      .+..+.+...+.... +..... ..  .. .+....++.+++.+........+..+.+|++.|+++.|+.+....+++.+
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~-~~--~~-~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~  393 (490)
T PRK10642        318 FVILGSVALFVLAIPAFILINS-NV--IG-LIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGL  393 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhC-CC--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHH
Confidence            887776543332222 211111 11  11 12222222233334444555667778999999999999877777778889


Q ss_pred             hhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhhhhhhcc
Q 011783          426 GPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQR  475 (477)
Q Consensus       426 ~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (477)
                      +|.+.|++.+...         ++...+++..+.++++.+..++  .||+
T Consensus       394 ~p~i~g~l~~~~~---------~~~~~~~~~~~~~~i~~~~~~~--~pes  432 (490)
T PRK10642        394 TPTLAAWLVESTQ---------NLMMPAYYLMVVAVIGLITGVT--MKET  432 (490)
T ss_pred             HHHHHHHHHHHhC---------CchHHHHHHHHHHHHHHHHHHH--hccc
Confidence            9999999987651         2444555555555555555444  4554

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=100.00  E-value=2.5e-34  Score=275.09  Aligned_cols=365  Identities=18%  Similarity=0.152  Sum_probs=265.4

Q ss_pred             chhHHHHHHHHHHHhhhchhchHhHHHH-HHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHH
Q 011783           39 PITELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (477)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~  117 (477)
                      .++.+..+.+..++..++.++..+.+|. +.+++|.++.+      .|++.+++.+++.+++++.|+++||+|||+++..
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~   86 (399)
T PRK05122         13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFL------AGLVISLQYLATLLSRPHAGRYADTLGPKKAVVF   86 (399)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHH------HHHHHHHHHHHHHHhchhhHhHHhccCCcchHHH
Confidence            3467888999999999999999999996 67889999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhh--------hhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHh
Q 011783          118 GTASVVIFNTLFGLS--------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPA  188 (477)
Q Consensus       118 ~~~~~~i~~~~~~~~--------~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  188 (477)
                      +.++.+++.+.+.++        .+++.+++.|+++|++.+...+. .+++.|++|+|+|++++++.+.+..+|.++||.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  166 (399)
T PRK05122         87 GLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAP  166 (399)
T ss_pred             HHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHH
Confidence            999988877766543        25778999999999999998887 889999999999999999999999999999999


Q ss_pred             HHHHhhhccccCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhh
Q 011783          189 LGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS  268 (477)
Q Consensus       189 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (477)
                      +++.+.+       .++|+..+. .  .....++..+...+.++.++   ++.+                +    .+.++
T Consensus       167 l~~~l~~-------~~g~~~~~~-~--~~~~~~~~~~~~~~~~~~~~---~~~~----------------~----~~~~~  213 (399)
T PRK05122        167 LGVLLYH-------WGGLAGLGL-L--IMLLALLGLLLARPRPAVPP---VKGE----------------R----LPFRR  213 (399)
T ss_pred             HHHHHHH-------cccHHHHHH-H--HHHHHHHHHHHHhcCCCCCC---CCcc----------------c----hhHHH
Confidence            9999987       455655541 0  11111111222221111100   0000                0    01222


Q ss_pred             hhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Q 011783          269 LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVA  348 (477)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  348 (477)
                      .+++  .+.......+..........+.+.|..+      .|+  .+.+.......++.+++.+ ..+++.||+++|+.+
T Consensus       214 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~-~~g~l~~r~~~~~~~  282 (399)
T PRK05122        214 VLGR--VWPYGMGLALASIGFGTIATFITLYYAA------RGW--DGAALALTLFGVAFVGARL-LFGNLINRLGGLRVA  282 (399)
T ss_pred             HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH------ccc--ccchHHHHHHHHHHHHHHH-HHHHHHHHhccHHHH
Confidence            2221  1211222222233333444555655543      344  2345666777788888877 889999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhh
Q 011783          349 RIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPA  428 (477)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~  428 (477)
                      ..+..+..++...+....+   .  + ......++.+++.+...+.......+..|+++||++.|+.+....+|..++|.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~---~--~-~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~  356 (399)
T PRK05122        283 IVSLLVEILGLLLLWLAPS---P--W-MALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGP  356 (399)
T ss_pred             HHHHHHHHHHHHHHHHhcc---H--H-HHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8887777766655544322   1  1 22333444556666677777777778899999999999999999999999999


Q ss_pred             HHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          429 GGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       429 ~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      +.|.+.++.          |++..|++.+++.+++.++...
T Consensus       357 ~~g~l~~~~----------g~~~~~~~~~~~~~~~~~~~~~  387 (399)
T PRK05122        357 LAGLVASWF----------GYPSIFLAAALAALLGLALTWL  387 (399)
T ss_pred             HHHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHH
Confidence            999999887          8889999988888888776665

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=100.00  E-value=7.9e-35  Score=282.11  Aligned_cols=396  Identities=11%  Similarity=0.040  Sum_probs=262.0

Q ss_pred             HHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHH
Q 011783           44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (477)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~  123 (477)
                      ....+......++...+...+|.+.++ |.+..+      .|++.+++.+++.+++++.|+++||+|||++++++.++.+
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~------~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~  104 (452)
T PRK11273         32 LGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA  104 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHH------HHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHH
Confidence            334444555555656677788988888 999999      9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhh----hHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHH-HHHhHHHHhhhcc
Q 011783          124 IFNTLFGLSV----NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLI-IGPALGGFLAQPA  197 (477)
Q Consensus       124 i~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~~~~  197 (477)
                      ++.+.+++++    +++.+++.|++.|++.+...+. ...+.|++|+++|++++++++.+.++|.. .+|+++..+.. .
T Consensus       105 i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~-~  183 (452)
T PRK11273        105 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW-F  183 (452)
T ss_pred             HHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-h
Confidence            9999888763    7888999999999998887776 78889999999999999999999999874 45554433332 2


Q ss_pred             ccCCcccccccccccccc-hHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCch-hhhhhcchhh
Q 011783          198 EKYPNLFSSESLFGKFPY-FLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP-KKSLLKNWPL  275 (477)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  275 (477)
                      .      +|+..|..... .....++..+.++|+++....+++++. . ++..+..++.++++.+.... .+.++|++.+
T Consensus       184 ~------gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (452)
T PRK11273        184 N------DWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEY-K-NDYPDDYNEKHEQELTAKQIFMQYVLPNKLL  255 (452)
T ss_pred             c------cHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhh-h-hccccccccccCCCccHHHHHHHHHHcChHH
Confidence            2      44444411111 122223344556666543211111100 0 00000000000000000111 2346788999


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--cchhHHH-HHH
Q 011783          276 MSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL--GPIMVAR-IAG  352 (477)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~-~~~  352 (477)
                      |...+..++..........++|.|+.+.     .|++..+.+.......++.+++.+ +.++++||+  +||.... ...
T Consensus       256 ~~~~l~~~~~~~~~~~~~~~~P~~l~~~-----~g~s~~~~~~~~~~~~~~~~~g~~-~~G~l~dr~~~~r~~~~~~~~~  329 (452)
T PRK11273        256 WYIAIANVFVYLLRYGILDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGTL-LCGWMSDKVFRGNRGATGVFFM  329 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccCCcchHHHHHH
Confidence            8887777777666667778889888754     688888889888888888888888 899999998  4443322 222


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHH-hhhHHH
Q 011783          353 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAA-GPAGGG  431 (477)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~-~~~~~g  431 (477)
                      .+..++.+.+..... ..  .+.. .+..+..+............+..|.+|++.||+++|+.+....+|+.+ +|.+.|
T Consensus       330 ~l~~~~~~~~~~~~~-~~--~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g  405 (452)
T PRK11273        330 TLVTIATIVYWLNPA-GN--PTVD-MACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG  405 (452)
T ss_pred             HHHHHHHHHHHHhcc-cC--hHHH-HHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHH
Confidence            222222222211111 11  1111 111222222222222333456678899999999999999999888765 799999


Q ss_pred             HHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhhhhhhcc
Q 011783          432 ALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQR  475 (477)
Q Consensus       432 ~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (477)
                      .+.|+.          ||+..|.+++++++++++........|+
T Consensus       406 ~l~~~~----------g~~~~f~~~~~~~~~~~~~~~~~~~~~~  439 (452)
T PRK11273        406 YTVDFF----------GWDGGFMVMIGGSILAVILLIVVMIGEK  439 (452)
T ss_pred             HHHHHh----------cchHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999998          8889999888888887776654333333

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=5.5e-35  Score=277.97  Aligned_cols=360  Identities=14%  Similarity=0.102  Sum_probs=263.7

Q ss_pred             HhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHh
Q 011783           52 CTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL  131 (477)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~  131 (477)
                      +.........+..|.+.+++|.+..+      .|++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+++++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~   87 (377)
T TIGR00890        14 FTSGYVYTWTLLAPPLGRYFGVGVTA------VAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAI   87 (377)
T ss_pred             HHhhHHhhhhhHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHH
Confidence            33334667788999999999999999      999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCccccccccc
Q 011783          132 SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF  210 (477)
Q Consensus       132 ~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~  210 (477)
                      ++|++.+++.|++.|++.+...+. ...+.|++| |+|+++.++...+.++|..+++++.+.+.+       ..+||..|
T Consensus        88 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~f  159 (377)
T TIGR00890        88 ADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVIN-------LEGVPAAF  159 (377)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHh-------cccHHHHH
Confidence            999999999999999998887666 778888887 679999999999999999887777666665       33555544


Q ss_pred             ccccchHHH-HHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHHHHHHHHhhh
Q 011783          211 GKFPYFLPC-LCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHD  289 (477)
Q Consensus       211 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (477)
                      ......... .+.....+++.++++++++++                  .++.....++.+|++.++......++.....
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (377)
T TIGR00890       160 IYMGIIFLLVIVLGAFLIGYPPGQLIKTNIE------------------VSVKDYTVWEMLRTPQFWVLYLSFFLNAVSG  221 (377)
T ss_pred             HHHHHHHHHHHHHHHHheecCchhccccCcc------------------cchhhhhHHHHHcCccHHHHHHHHHHHhHHH
Confidence            111111111 112222233322111100000                  0001123456778888877666655554444


Q ss_pred             hhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 011783          290 MAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLS  369 (477)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (477)
                      .....+.+.|..+      ++.+..+.+.......++.+++++ ..+++.||++||+.+..+..+..++...+.......
T Consensus       222 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (377)
T TIGR00890       222 LLLIGLYKPYGQS------LGLSDGFLVLAVSISSIFNGGGRP-FLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLN  294 (377)
T ss_pred             HHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccch
Confidence            4444444444332      678888889999999999999988 899999999999998888877777766554433211


Q ss_pred             hhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCc
Q 011783          370 GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGS  449 (477)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~  449 (477)
                         .. .......+.++..+...+....+..|.+|+++|+++.|+.+....+|..++|.+.|.+.++.          ||
T Consensus       295 ---~~-~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~----------g~  360 (377)
T TIGR00890       295 ---DV-LFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI----------GF  360 (377)
T ss_pred             ---hH-HHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh----------ch
Confidence               11 11111222234444555666778889999999999999999999999999999999999887          88


Q ss_pred             hHHHHHHHHHHHHHH
Q 011783          450 QMVFFVLNVVEAIGV  464 (477)
Q Consensus       450 ~~~~~~~~~~~~~~~  464 (477)
                      +..|.+.+++.+++.
T Consensus       361 ~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       361 EYTFIVTGAFALTSL  375 (377)
T ss_pred             hhHHHHHHHHHHHhc
Confidence            899988887777654

>PRK03633 putative MFS family transporter protein; Provisional

Probab=100.00  E-value=6e-34  Score=270.30  Aligned_cols=365  Identities=15%  Similarity=0.144  Sum_probs=276.9

Q ss_pred             hhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHH
Q 011783           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (477)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~  119 (477)
                      ++.++.++.+.++..++.+...+.+|.+.+++|.|..+      .|++.+.+.+++.+++++.|+++||+|||+++..+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~------~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~   78 (381)
T PRK03633          5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQ------VGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLAS   78 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            35577888999999999999999999999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccc
Q 011783          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (477)
Q Consensus       120 ~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  198 (477)
                      ++.+++.+.+++++|++.+++.|+++|++.+...|. .+.+.+..++++|+++++.++.+.++|..+||.+++.+.+.. 
T Consensus        79 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-  157 (381)
T PRK03633         79 LIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL-  157 (381)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-
Confidence            999999999999999999999999999999888777 788888999999999999999999999999999999987631 


Q ss_pred             cCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHH
Q 011783          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSS  278 (477)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (477)
                       + +...|....     ... ..+.++..+..++    ++++ +                   ...+.++.+|+|.++..
T Consensus       158 -~-~~~~~~~~~-----~~~-~~~~~~~~~~~~~----~~~~-~-------------------~~~~~~~~~~~~~~~~~  205 (381)
T PRK03633        158 -M-SVLPWVTGL-----VLA-AILPLLFTRILNQ----QAEN-H-------------------DSTSIWPMLKLRQARLG  205 (381)
T ss_pred             -c-chHHHHHHH-----HHH-HHHHHHHhcccCC----CCCC-C-------------------CCCCHHHHHHhcchHHH
Confidence             1 112222111     111 1111111111110    0000 0                   01234556777777655


Q ss_pred             HHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 011783          279 IIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPL  358 (477)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  358 (477)
                      ....+...........+.|.|..+      .|.++.+.+...+...++.++++. ..+++.||+++|+.+..+..+..++
T Consensus       206 ~~~~~~~~~~~~~~~~~lp~~~~~------~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~~~~~~l~~~~~~~~~~  278 (381)
T PRK03633        206 VNGCIISGIVLGSLYGLMPLYLNH------QGMSDASIGFWMALLVSAGILGQW-PIGRLADRFGRLLVLRVQVFVVILG  278 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHh-hhHHHHHHcCcHHHHHHHHHHHHHH
Confidence            443444333344455667777653      588888999999998999999998 8899999999999888877776665


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 011783          359 LTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQ  438 (477)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  438 (477)
                      .....  ..   ....    ....+.+.......|...+...+..|+++++...+..+...++|..++|.+.|.+.|+. 
T Consensus       279 ~~~~~--~~---~~~~----~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~-  348 (381)
T PRK03633        279 SIAML--SQ---AAMA----PALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY-  348 (381)
T ss_pred             HHHHh--hh---HHHH----HHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            54332  11   0111    11122233445667888888889899888888888888889999999999999999988 


Q ss_pred             hhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          439 KRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       439 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                               |++..|.+.+.+.++..+..++
T Consensus       349 ---------g~~~~f~~~~~~~l~~~~~~~~  370 (381)
T PRK03633        349 ---------SDNLLFIMIASVSFIYLLMLLR  370 (381)
T ss_pred             ---------CccHHHHHHHHHHHHHHHHHHh
Confidence                     8888999988888877766655

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=1.1e-33  Score=272.47  Aligned_cols=395  Identities=14%  Similarity=0.098  Sum_probs=260.5

Q ss_pred             hhHHHHHHHHHHHhhhchhchHhHHHH-HHHHh--cccccchhhhhhhHHH-----HHHHHHHHHHHhhhhhhhhhhcCC
Q 011783           40 ITELFSIWIIVLCTALPISSLFPFLYF-MIKDF--QIAKREEDIGSYAGYV-----GSSFMFGRALTSVFWGLVADRYGR  111 (477)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~s~~~~~~~~~~g~~-----~s~~~~~~~~~~~~~G~l~Dr~Gr  111 (477)
                      ++.+....++.+++.+|...+....|. +.+++  +.++.+       +++     .++..++..+++++.|+++||+||
T Consensus        21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Gr   93 (438)
T PRK09952         21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-------GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGR   93 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-------HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcc
Confidence            455667778899999999998888874 55555  555443       333     245667788999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHH
Q 011783          112 KPVIIMGTASVVIFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIG  182 (477)
Q Consensus       112 r~~~~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g  182 (477)
                      |+++..+.++++++++++++++|+.        .+++.|+++|++.|...+. ..++.|++|+++|++..+..+.+..+|
T Consensus        94 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G  173 (438)
T PRK09952         94 KRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVG  173 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Confidence            9999999999999999999999987        5889999999999998887 999999999999999999999999999


Q ss_pred             HHHHHhHHHHhhhccccCC-cccccccccccccchHHHHH-HHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcc
Q 011783          183 LIIGPALGGFLAQPAEKYP-NLFSSESLFGKFPYFLPCLC-ISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEG  260 (477)
Q Consensus       183 ~~~g~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (477)
                      .++++.+...+.....++. ..++||..|. ......... ......||++++.+.+++            .++    .+
T Consensus       174 ~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~-~~~~~~l~~~~l~~~~~es~~~~~~~~~------------~~~----~~  236 (438)
T PRK09952        174 LLLSTGLVSLISMMTTDEQFLSWGWRIPFL-FSIVLVLIALWVRNGMEESAEFEQQQHE------------QAA----AK  236 (438)
T ss_pred             HHHHHHHHHHHHHhCCHHHhhccChHHHHH-HHHHHHHHHHHHHHhCCCChhHHHHHhh------------ccc----cc
Confidence            9999888777654221111 0256666652 111111000 001112333221100000            000    00


Q ss_pred             cCCchhhhhhcchhhHHHHH-HHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011783          261 REATPKKSLLKNWPLMSSII-VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLE  339 (477)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~  339 (477)
                      +.....+.++++++.+.... ..++.....+....+.+.|..+.     +|++...........++...++.+ +.+++.
T Consensus       237 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-----~g~s~~~~~~~~~~~g~~~~i~~~-~~g~l~  310 (438)
T PRK09952        237 KRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQN-----LGLPRELFLNIGLLVGGLSCLTIP-CFAWLA  310 (438)
T ss_pred             ccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            01112234566766665443 33333444445556677666543     677776655555555666677776 889999


Q ss_pred             HhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHH
Q 011783          340 RILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGM  419 (477)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  419 (477)
                      ||++||+.+..+.++..+....+.......+  ....+....++.++..+...+..+++..|.+|++.|+++.|+.+...
T Consensus       311 Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~  388 (438)
T PRK09952        311 DRFGRRRVYITGALIGTLSAFPFFMALEAQS--IFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVA  388 (438)
T ss_pred             HHhCchHHHHHHHHHHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHH
Confidence            9999999888776655444332222111111  11122222333345555667777889999999999999999976654


Q ss_pred             -HHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhhhhhhccC
Q 011783          420 -SLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRH  476 (477)
Q Consensus       420 -~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (477)
                       .+++.++|.+.|++.+....        +|...+.+.+++.+++.+..+.  .|+++
T Consensus       389 ~~lgg~~~p~i~g~l~~~~~~--------~~~~~~~~~~~~~~i~~v~~~~--~~~~~  436 (438)
T PRK09952        389 SVVGGGFTPFIAAALVTYFGG--------SWHSVAIYLLAGCLISAMTALL--MKDNQ  436 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhcCC--------CchHHHHHHHHHHHHHHHHHHH--ccccc
Confidence             58999999999999885411        3667778787777777776654  45443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=5.7e-35  Score=287.15  Aligned_cols=400  Identities=17%  Similarity=0.119  Sum_probs=269.0

Q ss_pred             HHHHHHHHhhhchhchHhHHHHHHHHhccc--------ccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhH
Q 011783           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIA--------KREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (477)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--------~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~  116 (477)
                      .+.+..++..++...+.+..|.+.++++.+        ..+      .+++.+++.++..++++++|+++||+|||++++
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~  105 (481)
T TIGR00879        32 IAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSL------WGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLL  105 (481)
T ss_pred             HHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhH------HHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHH
Confidence            344455667778888899999999898887        566      999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh---hhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHH--
Q 011783          117 MGTASVVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG--  190 (477)
Q Consensus       117 ~~~~~~~i~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--  190 (477)
                      .+.++..++.+++.+.   .+++.+++.|+++|++.+...+. .++++|++|+++|++++++.+.+..+|..+++.++  
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~  185 (481)
T TIGR00879       106 IIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSG  185 (481)
T ss_pred             HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988654   35668999999999999988887 99999999999999999999999999999999998  


Q ss_pred             -HHhhhccccCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccc--hhhhhhhhhhc--------------
Q 011783          191 -GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCD--VSYDALESASA--------------  253 (477)
Q Consensus       191 -~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~--------------  253 (477)
                       ....+       ..+||..|..........++..+.+||+++....+++..+  +..++......              
T Consensus       186 ~~~~~~-------~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (481)
T TIGR00879       186 KVSLNN-------TLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDI  258 (481)
T ss_pred             hhcCCC-------CccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Confidence             44433       3345544422111223333444567776543111111100  00000000000              


Q ss_pred             cchhhcccCCchhhhhhcc------hhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHH
Q 011783          254 EVKEEEGREATPKKSLLKN------WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSL  327 (477)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~  327 (477)
                      ....++......+++.++.      +.++...+..+...........+.+.+...      .|++..+.+.......++.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~  332 (481)
T TIGR00879       259 KRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN------AGVSTDHAFLVSIIVGAVN  332 (481)
T ss_pred             HHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH------cCCCchHHHHHHHHHHHHH
Confidence            0000000001112223321      222222222222222222333344444332      6888888888888888889


Q ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHHHhhhhHHHHhHHHHHHhhc
Q 011783          328 LVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGF-----GLAFLLNCASVVKNLLSVSIITGLFILQNRA  402 (477)
Q Consensus       328 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (477)
                      +++.+ +.+++.||+++|+.+..+..+..++++.+.........     .....+....+...++.....+....+..|.
T Consensus       333 ~~~~~-~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (481)
T TIGR00879       333 FAFTF-VAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEI  411 (481)
T ss_pred             HHHHH-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhcc
Confidence            99888 88999999999999988877777766655432211111     0122222222222333444456667778999


Q ss_pred             CCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhhhhhhcc
Q 011783          403 VDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQR  475 (477)
Q Consensus       403 ~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (477)
                      +|++.|+++.|+.+...++|++++|.+.|.+.++.          ++...|++.+++++++.++.++ ..||+
T Consensus       412 ~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~----------~~~~~f~~~~~~~~~~~i~~~~-~~~~~  473 (481)
T TIGR00879       412 FPLSLRPKGISIAVAANWLANFIVGFLFPTMLESI----------GVGGVFIFFGGLNVLGLIFVYF-FLPET  473 (481)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CccceehhHHHHHHHHHHHHhe-ecccC
Confidence            99999999999999999999999999999999886          7888888888888887776654 34443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK03699 putative transporter; Provisional

Probab=100.00  E-value=8.4e-34  Score=270.40  Aligned_cols=370  Identities=12%  Similarity=0.104  Sum_probs=272.1

Q ss_pred             chhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHH
Q 011783           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (477)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~  118 (477)
                      +++..+..++..++.........+.+|.+.+++|.+.++      .+++.+.+.+++.+++++.|++.||+|||+++..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~------~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~   78 (394)
T PRK03699          5 RIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSS------MSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFG   78 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            345566777788888888888999999999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhcc
Q 011783          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (477)
Q Consensus       119 ~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  197 (477)
                      .++.+++.++++++++++++++.|+++|++.+...+. .+++.|++|+++|+++++..+....+|..++|.+.+.+....
T Consensus        79 ~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  158 (394)
T PRK03699         79 FALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARS  158 (394)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999998887776 899999999999999999999999999999999988876533


Q ss_pred             ccCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHH
Q 011783          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMS  277 (477)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (477)
                            ++||..|....... .....+....+.++.+++  ++ ++.              +.    ..++ ..++.++.
T Consensus       159 ------~gw~~~f~~~~~~~-~~~~~~~~~~~~p~~~~~--~~-~~~--------------~~----~~~~-~~~~~~~~  209 (394)
T PRK03699        159 ------IEWYWVYACIGLVY-VAIFILTLFSEFPALGKH--AP-KAD--------------KP----VAKE-KWGIGVLF  209 (394)
T ss_pred             ------ccHHHHHHHHHHHH-HHHHHHHHhcCCcccccc--Cc-ccc--------------Cc----cccc-cCChHHHH
Confidence                  34444441111111 111111111222211100  00 000              00    0011 12355555


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 011783          278 SIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIP  357 (477)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  357 (477)
                      ..+..++.......+..+.|.|+.+.     +|+++.+.+.+.+...++..++.+ +.+++.||+++|+.+.....+..+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~dr~~~~~~l~~~~~~~~~  283 (394)
T PRK03699        210 LAIAALLYILAQLTFISWVPEYAQKK-----FGMSLEDAGNLVSNFWMAYMVGMW-IFSFIVRFFDLQRILTVLAGLALV  283 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCChHHhhHHHHHHHHHHHHHHH-HHHHHHHHhchhhHHHHHHHHHHH
Confidence            55666666666667778888887644     789999999999999999999988 899999999999988777665555


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHh
Q 011783          358 LLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWA  437 (477)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  437 (477)
                      .+..+....   +.. +  .....+..+++.+..++...+...+..| +.+++..|......++|..++|.+.|.+.+..
T Consensus       284 ~~~~~~~~~---~~~-~--~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~  356 (394)
T PRK03699        284 LMYLFVNTD---DPS-H--LLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHF  356 (394)
T ss_pred             HHHHHHHcC---Cch-H--HHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence            444433222   111 1  1222333455566667777777777665 45678889999999999999999999999987


Q ss_pred             hhhccccCCCCchHHHHHHHHHHHHHHHH
Q 011783          438 QKRLDASFLPGSQMVFFVLNVVEAIGVLM  466 (477)
Q Consensus       438 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  466 (477)
                                |++..+++.+++++++.+.
T Consensus       357 ----------g~~~~~~~~~~~~~~~~~~  375 (394)
T PRK03699        357 ----------GLQAALLTANGLYAVVFVM  375 (394)
T ss_pred             ----------CchhhhhhhHHHHHHHHHH
Confidence                      7778888777777666443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=1e-33  Score=268.73  Aligned_cols=369  Identities=15%  Similarity=0.165  Sum_probs=263.3

Q ss_pred             hHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHH
Q 011783           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (477)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~  120 (477)
                      +.++.+.+..++.........+.+|.+.+|+|.+..+      .|++.+.+.+++.++++++|+++||+|||+++..+.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   76 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPA------AGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVA   76 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHH------HhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHH
Confidence            4567778888888899999999999999999999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhcccc
Q 011783          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (477)
Q Consensus       121 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  199 (477)
                      +.+++.+++++++|++++++.|+++|++.+...+. ..++.|++|+++|++++++...+..+|..++|++++.+.+    
T Consensus        77 ~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~----  152 (382)
T PRK10091         77 LCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ----  152 (382)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh----
Confidence            99999999999999999999999999998887777 8889999999999999999999999999999999999887    


Q ss_pred             CCcccccccccccccc-hHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHH
Q 011783          200 YPNLFSSESLFGKFPY-FLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSS  278 (477)
Q Consensus       200 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (477)
                         .++||+.|..... .....+.....+||.++.     ++.+.                    ....+.+|++..+..
T Consensus       153 ---~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~-----~~~~~--------------------~~~~~~~~~~~~~~~  204 (382)
T PRK10091        153 ---EFSWRYTFLLIAVFNIAVLASIYFWVPDIRDE-----AKGGL--------------------REQFHFLRSPAPWLI  204 (382)
T ss_pred             ---hccHHHHHHHHHHHHHHHHHHHHHhCCCCCcc-----cccCH--------------------HHHHHHhcChHHHHH
Confidence               3455554421111 111112222334443210     00000                    011234566666655


Q ss_pred             HHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 011783          279 IIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPL  358 (477)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  358 (477)
                      .....+..........+.+.+..+.     +|+++.+.+++.+...++.+++++ +.+++.||+++++.+..+..+..++
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~~r~~~~~~~~~~~~~~~i~  278 (382)
T PRK10091        205 FAATMFGNAGVFAWFSYIKPYMMFI-----SGFSETSMTFIMMLVGLGMVLGNL-LSGRLSGRYSPLRIAAVTDFIIVLA  278 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHhH-HHheeccccCchhHHHHHHHHHHHH
Confidence            4444333322333333344444322     789999999999999999999998 8999999999999988887777666


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhH-HHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHh
Q 011783          359 LTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITG-LFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWA  437 (477)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  437 (477)
                      .+.+......  ...  ... ...+.+.+.....+. ......+..|++.++.+.  .+....+|.++||.++|.+.|..
T Consensus       279 ~~~~~~~~~~--~~~--~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~  351 (382)
T PRK10091        279 LLMLFFFGGM--KTA--SLI-FAFICCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLG  351 (382)
T ss_pred             HHHHHHHHhh--HHH--HHH-HHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHcc
Confidence            6544332221  111  111 111112222222332 223444545555565543  46678999999999999999864


Q ss_pred             hhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          438 QKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       438 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                               .+|+..+.+.++++++.......
T Consensus       352 ---------~~~~~~~~~~~~~~~~~~~~~~~  374 (382)
T PRK10091        352 ---------LAYNYVALPAALLSFAAMSSLLL  374 (382)
T ss_pred             ---------cCcchHHHHHHHHHHHHHHHHHH
Confidence                     16888888887776666555444

>TIGR00900 2A0121 H+ Antiporter protein

Probab=100.00  E-value=2.4e-34  Score=272.38  Aligned_cols=355  Identities=16%  Similarity=0.093  Sum_probs=271.8

Q ss_pred             HHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHH
Q 011783           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (477)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i  124 (477)
                      .+....++..++.....+.+|.+.++++.+..+      .|++.+++.++..++++++|+++||+|||+++..+.++..+
T Consensus         3 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~   76 (365)
T TIGR00900         3 LLFAAQLISLIGTAITQVALPLYVLAGTGSASV------LSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAV   76 (365)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHH
Confidence            356778888888999999999999999999999      99999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhh-----hHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccc
Q 011783          125 FNTLFGLSV-----NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (477)
Q Consensus       125 ~~~~~~~~~-----~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  198 (477)
                      +.++..+++     +++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+....+|..+||.+++.+.+   
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~---  153 (365)
T TIGR00900        77 LVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA---  153 (365)
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---
Confidence            998888888     9999999999999999998888 9999999999999999999999999999999999999987   


Q ss_pred             cCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHH
Q 011783          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSS  278 (477)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (477)
                          .++|+..+...........+....+++.+ .+++++++.+   ++          ..++..+..+.++|+|.++..
T Consensus       154 ----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~----------~~~~~~~~~~~~~~~~~~~~~  215 (365)
T TIGR00900       154 ----TLGIKWAIWVDAVGFAISALLIVSVRIPE-LAASEIQALS---NA----------VLRDTREGIKFVLKNPLLRTL  215 (365)
T ss_pred             ----HhhHHHHHHHHHHHHHHHHHHHHhccccc-CCCccccccc---hh----------HHHHHHhHHHHHHcCcHHHHH
Confidence                44555554111111111111111221111 0000000000   00          001112345677888888887


Q ss_pred             HHHHHHHHhhhhhhH-HHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 011783          279 IIVYCVFSLHDMAYS-EIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIP  357 (477)
Q Consensus       279 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  357 (477)
                      ....++......... .+.|.|..+.     +|.++.+.+.......++.+++.. +.+++.||.++++....+..+..+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~  289 (365)
T TIGR00900       216 LLLALLFNLVFAPAIVALFPYVQSKY-----LGRGSTHYGWVLAAFGLGALLGAL-LLGLLGRYFKRMALMTGAIFVIGL  289 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHH-----hCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhchhHHHHHHHHHHHH
Confidence            777666665554444 6667666543     688999999999999999999988 788999999999988877666666


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHh
Q 011783          358 LLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWA  437 (477)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  437 (477)
                      .+....+...  +   .....+..++.+++.+...+...++..+.+|+++|+++.|+.+...+++..++|.+.|.+.|..
T Consensus       290 ~~~~~~~~~~--~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~  364 (365)
T TIGR00900       290 AILVVGLTPP--N---FPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL  364 (365)
T ss_pred             HHHHHHhhch--h---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            6555544332  1   2233344455567777778888899999999999999999999999999999999999999865

>PRK10504 putative transporter; Provisional

Probab=100.00  E-value=1.8e-33  Score=275.05  Aligned_cols=377  Identities=15%  Similarity=0.131  Sum_probs=278.7

Q ss_pred             hhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHH
Q 011783           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (477)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~  119 (477)
                      ++.++.++++.++..++.+.+.+.+|.+.+++|.+..+      .+++.+.+.++..++.+++|+++||+|||++++.+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~   82 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLH------MHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAI   82 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence            45677788888999999999999999999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccc
Q 011783          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (477)
Q Consensus       120 ~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  198 (477)
                      ++.+++.++++++++++.+++.|+++|++.+...|. .+++.|++|+++|++++++.....++|..+||.+++.+.+   
T Consensus        83 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~---  159 (471)
T PRK10504         83 VLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVE---  159 (471)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh---
Confidence            999999999999999999999999999999998887 9999999999999999999999999999999999999988   


Q ss_pred             cCCcccccccccc-cccchHHHHHHHHHhhccccccCCCCCCccchhhh---------hhhhhhc---------------
Q 011783          199 KYPNLFSSESLFG-KFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYD---------ALESASA---------------  253 (477)
Q Consensus       199 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~---------------  253 (477)
                          .++|++.|. ..++.....+......|+.+.... +.+.......         ..++...               
T Consensus       160 ----~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (471)
T PRK10504        160 ----YASWHWIFLINIPVGIIGAIATLMLMPNYTMQTR-RFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVG  234 (471)
T ss_pred             ----hccHHHHHHHHHHHHHHHHHHHHHhCCCccccCC-CCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHH
Confidence                344555442 111112222222223333221111 1110000000         0000000               


Q ss_pred             -------cchhhcccCCchhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHH
Q 011783          254 -------EVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFS  326 (477)
Q Consensus       254 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~  326 (477)
                             ..++++.+.+....+++|||++...+...++..........+.|.|.+..     .|.++.+.++......++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~  309 (471)
T PRK10504        235 VVALLLYLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIG-----LGFSPFHAGLMMIPMVLG  309 (471)
T ss_pred             HHHHHHHHHHHhcCCCCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHH
Confidence                   00011111222234588999998887777777666666666777777643     788999999999888888


Q ss_pred             HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcc
Q 011783          327 LLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQD  406 (477)
Q Consensus       327 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (477)
                      ..++.. +.+++.||+++|+.+..+..+..+....+.+.....  ..+ .......+.+++.+...+....+..+.+|++
T Consensus       310 ~~~~~~-~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  385 (471)
T PRK10504        310 SMGMKR-IVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLG--WYY-LLPFVLFLQGMVNSTRFSSMNTLTLKDLPDN  385 (471)
T ss_pred             HHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccc--cHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence            887777 889999999999999888887776655554432211  111 1122233334555666777778888889999


Q ss_pred             hhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 011783          407 QRGAANGIAMTGMSLFKAAGPAGGGALFSWAQK  439 (477)
Q Consensus       407 ~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~  439 (477)
                      .+++++|+.++...+|..+|+.+.|.+.+..+.
T Consensus       386 ~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        386 LASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999988743

>PRK12382 putative transporter; Provisional

Probab=100.00  E-value=2.2e-33  Score=267.84  Aligned_cols=364  Identities=17%  Similarity=0.158  Sum_probs=259.5

Q ss_pred             hhHHHHHHHHHHHhhhchhchHhHHHH-HHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHH
Q 011783           40 ITELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (477)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~  118 (477)
                      ++.++.+.++.++..+..++..|.+|. +.+|+|.+..+      .|++.+++.+++.++++++|+++||+||||++..+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~------~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~   87 (392)
T PRK12382         14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTM------VGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQG   87 (392)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHH------HHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHH
Confidence            355667777888888888999999995 67899999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh--------hhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhH
Q 011783          119 TASVVIFNTLFGL--------SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPAL  189 (477)
Q Consensus       119 ~~~~~i~~~~~~~--------~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  189 (477)
                      .+...++.+.+..        .++++.+++.|+++|++.+...+. .+++.|++|+|+|++++++.+.+...|..+||++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~  167 (392)
T PRK12382         88 MLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPL  167 (392)
T ss_pred             HHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHH
Confidence            8887776543321        358899999999999999888787 8899999999999999999999999999999999


Q ss_pred             HHHhhhccccCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhh
Q 011783          190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL  269 (477)
Q Consensus       190 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (477)
                      ++.+.+       .++|+..+.   ......+......++.++.++   ++.+                +    .+.++.
T Consensus       168 ~~~l~~-------~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~----------------~----~~~~~~  214 (392)
T PRK12382        168 GLLLHS-------HFGFAALAL---TTMVLPLLAWAFNGTVRKVPA---HAGE----------------R----PSLWSV  214 (392)
T ss_pred             HHHHHh-------ccChHHHHH---HHHHHHHHHHHHHHhccCCCC---Cccc----------------C----chHHHH
Confidence            999887       345554431   001111112222222211110   0000                0    011111


Q ss_pred             hcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Q 011783          270 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  349 (477)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  349 (477)
                      .|  .++.......+..........+.+.|..+      .+++  +.+......+++.+++++ ..+++.||+++|+.+.
T Consensus       215 ~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~-~~g~l~~r~g~~~~~~  283 (392)
T PRK12382        215 VG--LIWKPGLGLALQGVGFAVIGTFVSLYFAS------KGWA--MAGFTLTAFGGAFVLMRV-LFGWMPDRFGGVKVAI  283 (392)
T ss_pred             HH--HHHHhHHHHHHHHHHHhHHHHHHHHHHHh------cCCc--hhHHHHHHHHHHHHHHHH-HHHHHHHhcCCCeehH
Confidence            11  11111111222222233344455555543      3443  345566667777778877 8899999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhH
Q 011783          350 IAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAG  429 (477)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~  429 (477)
                      .+..+..++...+....+   .  + .......+.+++.+...+.......+..|+++||++.|+.+....+|..++|.+
T Consensus       284 ~~~~~~~~~~~~~~~~~~---~--~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~  357 (392)
T PRK12382        284 VSLLVETVGLLLLWLAPT---A--W-VALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPL  357 (392)
T ss_pred             HHHHHHHHHHHHHHHccc---H--H-HHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888777776655444321   1  1 222233444555566677777788888999999999999999999999999999


Q ss_pred             HHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          430 GGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       430 ~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      .|.+.++.          ||+..|.+.+++.+++.+..+.
T Consensus       358 ~g~l~~~~----------g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        358 AGMLATSF----------GYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHh----------CchHHHHHHHHHHHHHHHHHHh
Confidence            99999988          8999999999888888776654

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=100.00  E-value=8.2e-34  Score=279.04  Aligned_cols=375  Identities=12%  Similarity=0.143  Sum_probs=281.9

Q ss_pred             HHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHH
Q 011783           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (477)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~  121 (477)
                      .+..+.++.++..++.....+.+|.+.+++|.+.++      .+++.+.+.++..++.++.|+++||+|||++++.+.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   76 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQ------VQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFA   76 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh------hhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHH
Confidence            456677888999999999999999999999999999      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccC
Q 011783          122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (477)
Q Consensus       122 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~  200 (477)
                      ..++.+++++++|++.+++.|+++|++.+...+. .+++.|++|+++|+++++++.....+|..+||.+++++.+ ..+|
T Consensus        77 ~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~~w  155 (485)
T TIGR00711        77 FTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE-NYHW  155 (485)
T ss_pred             HHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc-CcCc
Confidence            9999999999999999999999999999988887 9999999999999999999999999999999999999987 2344


Q ss_pred             CcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchh-------------hhhhhhhhccc------------
Q 011783          201 PNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVS-------------YDALESASAEV------------  255 (477)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~------------  255 (477)
                      |+.|.....     ..+...+...+.+||.++..+++.+.....             .+..+..+.+.            
T Consensus       156 ~~~f~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (485)
T TIGR00711       156 RWIFLINVP-----IGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLV  230 (485)
T ss_pred             eehhhhhhH-----HHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHH
Confidence            444432211     122223333344555332211111100000             00000000000            


Q ss_pred             -------hhhcccCCchhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHH
Q 011783          256 -------KEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLL  328 (477)
Q Consensus       256 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~  328 (477)
                             .+.+.+++....+++++++++...+..++..........+.|.|.++.     +|+++.+.+.......++.+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~g~s~~~~g~~~~~~~~~~~  305 (485)
T TIGR00711       231 AIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQV-----LGYTALQAGLHILPVGLAPM  305 (485)
T ss_pred             HHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHH
Confidence                   011222233345678899988887777777777777777888887754     78999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchh
Q 011783          329 VFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQR  408 (477)
Q Consensus       329 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (477)
                      ++.+ +.+++.||+++|+.+..+..+..++...+.+...... ..+ .......+.+++.+...+.......+..|++++
T Consensus       306 ~~~~-~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~  382 (485)
T TIGR00711       306 LSSP-IAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDT-PFL-AIALPQFIRGFGMGCFFMPLTTIALSGLPPHKI  382 (485)
T ss_pred             HHHH-HHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCC-CHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            9988 8899999999999988888777777665542111111 111 222223444556666666666677778999999


Q ss_pred             hHHhHHHHHHHHHHHHHhhhHHHHHHHH
Q 011783          409 GAANGIAMTGMSLFKAAGPAGGGALFSW  436 (477)
Q Consensus       409 g~~~g~~~~~~~~g~~~~~~~~g~l~~~  436 (477)
                      +++.|+.+..+.+|+.+|+.+.|.+.++
T Consensus       383 g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       383 ARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999874

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=100.00  E-value=3.6e-34  Score=276.55  Aligned_cols=403  Identities=13%  Similarity=0.026  Sum_probs=267.9

Q ss_pred             hhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHH
Q 011783           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (477)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~  119 (477)
                      ++.++...+.....+.+........|.+.+ +|.++++      .+++.+++.++..+++++.|+++||+|||+++..+.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~   98 (438)
T TIGR00712        26 WQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGE------LGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGL   98 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhH------hHHHHHHHHHHHHHhhhccchhhhccCCceehHHHH
Confidence            444555556666666777777777787775 5999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh----hhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhh
Q 011783          120 ASVVIFNTLFGLS----VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (477)
Q Consensus       120 ~~~~i~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (477)
                      ++.+++.++.+..    ++++.+.+.|++.|++.|...+. ...+.|++|+++|++++++.+.+.++|..+++.+.+...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~  178 (438)
T TIGR00712        99 ILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGM  178 (438)
T ss_pred             HHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHH
Confidence            9999998887764    46788889999999998887776 889999999999999999999999999999988877655


Q ss_pred             hccccCCcccccccccccccc-hHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCc-hhhhhhcc
Q 011783          195 QPAEKYPNLFSSESLFGKFPY-FLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT-PKKSLLKN  272 (477)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  272 (477)
                      ...      .+||..|..... .++..+...+.++|.++..+.++.+..+  ++..+...+..+++.+.+. ..+..+|+
T Consensus       179 ~~~------~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (438)
T TIGR00712       179 AWF------NDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYR--NDYPDDYNEKAEQELTAKEIFMQYVLPN  250 (438)
T ss_pred             HHh------hhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcc--cccccccccccccccchHHHHHHHHccC
Confidence            432      344444421111 1222333444566654432111111000  0000000000000000011 12346788


Q ss_pred             hhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 011783          273 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  352 (477)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  352 (477)
                      +.++...+..++..........+.|.|+.+.     .|+++.+.++...+..+..+++.+ +.+++.||+++++....+.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~dr~~~~~~~~~~~  324 (438)
T TIGR00712       251 KLLWYIAIANVFVYLLRYGVLDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGTL-LCGWMSDKVFKGNRGATGV  324 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHHHHc-----cCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHhccCcccHHHH
Confidence            8888877766666656567777888888754     688999999999999999999988 8999999986433222232


Q ss_pred             HHHHHHHH-HHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHH-HHhhhHH
Q 011783          353 VLTIPLLT-SYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFK-AAGPAGG  430 (477)
Q Consensus       353 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~-~~~~~~~  430 (477)
                      ........ ...+...... ..+.. ....+..++...+..........+.+|++.||+++|+.+...++++ +++|.+.
T Consensus       325 ~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~  402 (438)
T TIGR00712       325 FFMTLVTIAVIVYWMNPAG-NPLVD-MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV  402 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCC-chHHH-HHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhH
Confidence            22211111 1111111000 11111 1111111222122222223456788999999999999999888875 6899999


Q ss_pred             HHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhhhhhhccC
Q 011783          431 GALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRH  476 (477)
Q Consensus       431 g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (477)
                      |.+.|+.          ||+..|.+..++.+++.+..+. ..+|+|
T Consensus       403 G~l~~~~----------g~~~~~~~~~~~~~~~~~~~~~-~~~~~~  437 (438)
T TIGR00712       403 GYTVDFF----------GWDGGFMVMIGGSILAVILLIV-VMIGEK  437 (438)
T ss_pred             HHHHHhc----------cchHHHHHHHHHHHHHHHHHHH-HHhhcc
Confidence            9999987          8889998888888787777666 455554

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00897 2A0118 polyol permease family

Probab=100.00  E-value=5e-33  Score=265.69  Aligned_cols=381  Identities=14%  Similarity=0.148  Sum_probs=270.0

Q ss_pred             hhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHH
Q 011783           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (477)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~  119 (477)
                      +|.+...+++.++..+..+...+.++.+.+|+|.++.+      .|++.+.+.+++.+++++.|+++||+|||+++..+.
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~   85 (402)
T TIGR00897        12 PLNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQ------SASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGL   85 (402)
T ss_pred             CchhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHH------hHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            45677778888888888777778888888999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH---h-hhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHH-HHHHhHHHHh
Q 011783          120 ASVVIFNTLFG---L-SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGL-IIGPALGGFL  193 (477)
Q Consensus       120 ~~~~i~~~~~~---~-~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~l  193 (477)
                      ++.+++.+++.   . .++++.+++.|++.|++.+...+. .+.+.+++|+++|++++|+.+.+.++|. .++|++++.+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l  165 (402)
T TIGR00897        86 LLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYA  165 (402)
T ss_pred             HHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99998876553   3 357889999999999998877666 8888999999999999999999999997 6899999888


Q ss_pred             hhccccCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcch
Q 011783          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNW  273 (477)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (477)
                      .+. .+|+.. .|+..+    +.....++..+..++.+++++  +++++    +           ..+.....+.++|+|
T Consensus       166 ~~~-~g~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~----~-----------~~~~~~~~~~~~~~~  222 (402)
T TIGR00897       166 IPA-FGEMNT-LWSALA----FVLTGGVIALFSNKDIFTPQH--MQTRE----K-----------FSELGKAATILFTNP  222 (402)
T ss_pred             ccc-cchHHH-HHHHHH----HHHHHHHHHHhccCCCCCccc--ccCCc----c-----------hhhHHHHHHHHHcCh
Confidence            762 222211 133222    111111222222222211110  00000    0           011112456788999


Q ss_pred             hhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH-HHH
Q 011783          274 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR-IAG  352 (477)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~  352 (477)
                      +++...+..++..........+.|.|..+      +|+++.+.+.......++..++.. ..+++.||++||+... .+.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~dr~~~~~~~~~~~~  295 (402)
T TIGR00897       223 NVLLGGMVRIINTIGLFGFAVFLPMFVAE------LGFSTSEWLQIWGTFFFTNIVFNV-IFGIVGDKLGWMNTVRWFGG  295 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHhhcchhHHHHHHH
Confidence            99887777777666666777788877653      788999999988888999999998 8899999999887664 223


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHH
Q 011783          353 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA  432 (477)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~  432 (477)
                      ....+....+...........+ ......++.+++.....+. .....+. ++++||++.|+.+....+++.++|.+.|.
T Consensus       296 l~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~-~~~~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~i~g~  372 (402)
T TIGR00897       296 VGCGIFTLALYYIPQHFGHSFA-VALIIAIALGIFLAGYVPL-AAVFPTL-APKHKGAAMSVLNLSAGLSAFLAPAIAVL  372 (402)
T ss_pred             HHHHHHHHHHHHHHHccCCcHH-HHHHHHHHHHHHHHHHHHH-HHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333332222222211111111 1222233334444444443 4455664 55789999999999999999999999999


Q ss_pred             HHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          433 LFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       433 l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      +.+..          |+...+++.+++.+++.+...+
T Consensus       373 l~~~~----------g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       373 FIGFF----------GAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHhhc----------chHHHHHHHHHHHHHHHHHHHH
Confidence            99987          8888999999888888777665

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=100.00  E-value=3.3e-33  Score=262.42  Aligned_cols=391  Identities=12%  Similarity=0.042  Sum_probs=274.1

Q ss_pred             CCCchhHHHHHHHHHHHhhhchhchHhHHHHHHH-HhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchh
Q 011783           36 SGLPITELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV  114 (477)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~  114 (477)
                      ++..+|.+...+++.++.+....+.+++.+.+.+ |+|+|.+|      .+++.+++.+++.+++++.|++.||+|.|++
T Consensus        29 ~~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q------~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v  102 (462)
T PRK15034         29 KHIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQ------LFLLTALPSVSGALLRVPYSFMVPIFGGRRW  102 (462)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHH
Confidence            4445678888899999999999999999998876 89999999      9999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHhhhcccchhhHHHHhhhhccccchhhHHHHHHHHhHHHHHHHHhH
Q 011783          115 IIMGTASVVIFNTLFGLS-----VNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPAL  189 (477)
Q Consensus       115 ~~~~~~~~~i~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  189 (477)
                      +.++.++.++.++..+++     ++++.+++.|++.|++.+.+.+....+++++|+++||+++|+.....++|..+++++
T Consensus       103 ~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l  182 (462)
T PRK15034        103 TVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLV  182 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHH
Confidence            999999999999999987     899999999999999844444449999999999999999999987777787776666


Q ss_pred             HHHhhh----ccccCCc-------ccccccccccccchH-HHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchh
Q 011783          190 GGFLAQ----PAEKYPN-------LFSSESLFGKFPYFL-PCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKE  257 (477)
Q Consensus       190 ~~~l~~----~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (477)
                      ...+..    ...+|..       ..+|+.+...+.... +..++..+.+++.+.    +  +                 
T Consensus       183 ~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~----~--~-----------------  239 (462)
T PRK15034        183 APLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS----S--R-----------------  239 (462)
T ss_pred             HHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc----c--c-----------------
Confidence            655431    1112221       223444331111111 111122222111110    0  0                 


Q ss_pred             hcccCCchhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 011783          258 EEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPF  337 (477)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  337 (477)
                         ......++.+|+|..|...+.+++.+..+.++..++|.|..+.     +  +.........+..+...+.++ ++|+
T Consensus       240 ---~~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~-----~--~~~~~l~~~~l~~l~~~l~rp-lgG~  308 (462)
T PRK15034        240 ---ASIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQ-----F--PDVNILRLAFFGPFIGAIARS-VGGA  308 (462)
T ss_pred             ---cCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----c--ChHHHHHHHHHHHHHHHHHHH-hhHH
Confidence               0112456789999999999999998888888888899887642     2  222222223334566777777 8999


Q ss_pred             HHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCc------------
Q 011783          338 LERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQ------------  405 (477)
Q Consensus       338 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  405 (477)
                      ++||+|+++.+..+.+...+........................+...++.+.-+...+-++.+.+|+            
T Consensus       309 LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~  388 (462)
T PRK15034        309 ISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGS  388 (462)
T ss_pred             HHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccc
Confidence            99999999999988876666653322222111001111112212222233333334444455555553            


Q ss_pred             ---------chhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhhhhhhcc
Q 011783          406 ---------DQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQR  475 (477)
Q Consensus       406 ---------~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (477)
                               ++.|.+.|+....+.+|+++-|.+.|...+.+         +++...|+.+.+..+++.++.+..+.|+.
T Consensus       389 ~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~---------g~~~~~~~~~~~~~~~~~~~~w~~y~r~~  458 (462)
T PRK15034        389 DEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMT---------GSPVGAMKVFLIFYIVCVLLTWLVYGRRK  458 (462)
T ss_pred             hhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHc---------CCcHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence                     26889999999999999999999999998877         25778899998888888888877555553

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=100.00  E-value=2.4e-33  Score=266.34  Aligned_cols=371  Identities=13%  Similarity=0.052  Sum_probs=261.1

Q ss_pred             HHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHH
Q 011783           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (477)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~  121 (477)
                      .+..++.+.++..++..+.....+.+.+|++.++.+      .+++.+.+.+++.+.++++|+++||+|||++++++.++
T Consensus         4 ~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~   77 (393)
T PRK11195          4 GFYAIMAAQFFSALADNALLFAAIALLKELHYPDWS------QPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGI   77 (393)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH------HHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHH
Confidence            456678888888887777777777788999999888      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccC
Q 011783          122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (477)
Q Consensus       122 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~  200 (477)
                      .+++.++++++++.   ++.|+++|++.+...|+ .+++.|++|+++|++++++.+....+|.++||.++|++.+..   
T Consensus        78 ~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~---  151 (393)
T PRK11195         78 KLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH---  151 (393)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            99998888777664   78899999999999998 999999999999999999999999999999999999998831   


Q ss_pred             CcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHH
Q 011783          201 PNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSII  280 (477)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (477)
                           |+..+...........+....+||.+.++++++++.+..   .           .+.....+.++++|.+.....
T Consensus       152 -----~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~-----------~~~~~~~~~l~~~~~~~~~~~  212 (393)
T PRK11195        152 -----AEAALAVCALIYLLAALFNLFIPRLGARRPGQSWNPIAL---L-----------RDFFHACRVLWRDKLGRFSLA  212 (393)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHhcCCCCcccccccCCCHHHH---H-----------HHHHHHHHHHHhCchhHHHHH
Confidence                 322221111111111222344555432211111000000   0           000112456778887766555


Q ss_pred             HHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 011783          281 VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLT  360 (477)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  360 (477)
                      ...+............+.|.++.     +|.++.+.|......+++.++++. ..+++.||.++++....+.. ..+...
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~-----lg~s~~~~G~~~~~~~~g~i~g~~-~~~~l~~~~~~~~~~~~g~~-~~~~~~  285 (393)
T PRK11195        213 GTTLFWGAGATLRFLVLAWAPVA-----LGITLNQPAYLQAVVAIGIAVGAG-AAARLVTLETVLRVLPAGIL-MGLVVL  285 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----cCCChhHHHHHHHHHHHHHHHHHH-HHHHHhcCCcccchHHHHHH-HHHHHH
Confidence            44444433444445556666544     788999999999999999999988 88899888888877766643 233222


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcch-hhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 011783          361 SYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQ-RGAANGIAMTGMSLFKAAGPAGGGALFSWAQK  439 (477)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~  439 (477)
                      .+....   +  .+ ......++.+++.+...+...+..++..|++. +|++.++.+..++++..++..+.+.+ +..  
T Consensus       286 ~~~~~~---~--~~-~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~--  356 (393)
T PRK11195        286 LMALQH---S--LL-PAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKL--  356 (393)
T ss_pred             HHHHHh---H--HH-HHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHc--
Confidence            222211   1  11 22233334455556666667777788666554 79999999999999999999998865 444  


Q ss_pred             hccccCCCCchHHHHHHHHHHHHHHHHH
Q 011783          440 RLDASFLPGSQMVFFVLNVVEAIGVLMT  467 (477)
Q Consensus       440 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~  467 (477)
                              |.+..+++.+...+++..+.
T Consensus       357 --------~~~~~~~~~~~~~~~~~~~~  376 (393)
T PRK11195        357 --------GVPVVAVIVGFGLLVALAMA  376 (393)
T ss_pred             --------CCCHHHHHHHHHHHHHHHHH
Confidence                    66666666555555554443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=100.00  E-value=1.3e-33  Score=271.41  Aligned_cols=371  Identities=14%  Similarity=0.052  Sum_probs=269.4

Q ss_pred             HHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHH
Q 011783           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (477)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~  122 (477)
                      +..++...++..++.....+.+|.+.++++.++.+      .|++.+.+.+++.+++++.|+++||+|||+++..+.++.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~   92 (417)
T PRK10489         19 FRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQ------VGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTC   92 (417)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHH
Confidence            44556667788888888899999999999999888      999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHh-----hhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhc
Q 011783          123 VIFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (477)
Q Consensus       123 ~i~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  196 (477)
                      +++.+..+.     .++++.+++.|++.|++.+...+. .+++.|++|+++|+++.++.+...++|..+||.+++.+.+ 
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~-  171 (417)
T PRK10489         93 GLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIA-  171 (417)
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH-
Confidence            777665542     567899999999999998887777 9999999999999999999999999999999999999987 


Q ss_pred             cccCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhH
Q 011783          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLM  276 (477)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (477)
                            ..+|++.+...........+..+.+|+.+++++++  + +.               .++.....+..+++|.++
T Consensus       172 ------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~-~~---------------~~~~~~~~~~~~~~~~~~  227 (417)
T PRK10489        172 ------AGGVAWNYGLAAAGTFITLLPLLRLPALPPPPQPR--E-HP---------------LRSLLAGFRFLLASPVVG  227 (417)
T ss_pred             ------HHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc--c-cc---------------hHHHHHHHHHHHcChHHH
Confidence                  23344333111111122222233444432211100  0 00               001112345567788776


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 011783          277 SSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTI  356 (477)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  356 (477)
                      ...+..++... ......+.|.|..+.     +|.++.+.|.+.+...++.+++.. +.+++.||.++++.+..+..+..
T Consensus       228 ~~~~~~~~~~~-~~~~~~~~p~~~~~~-----~g~~~~~~g~~~~~~~~g~~ig~~-~~~~l~~~~~~~~~l~~~~~~~~  300 (417)
T PRK10489        228 GIALLGGLLTM-ASAVRVLYPALADEV-----WQMGAAQIGLLYAAVPLGAALGAL-TSGWLAHSARPGLLMLLSTLGSF  300 (417)
T ss_pred             HHHHHHHHHHH-HHhHHHhhHHHHHhc-----cCCChhHhHHHHHHHHHHHHHHHH-HHHHhhhccCcchHHHHHHHHHH
Confidence            65554443332 234555667666643     788899999999999999999988 88999998777777777776666


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHH
Q 011783          357 PLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSW  436 (477)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  436 (477)
                      ++.+.+....+      +....+..++.+++.+...+...+++.+..|++.||+++|+.+...++|..+||.+.|.+.+.
T Consensus       301 ~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~  374 (417)
T PRK10489        301 LAVGLFGLMPM------WILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAM  374 (417)
T ss_pred             HHHHHHHccch------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH
Confidence            66554433221      112233334445555555666778889999999999999999999999999999999999998


Q ss_pred             hhhhccccCCCCchHHHHHHHHHHHHHHHHH
Q 011783          437 AQKRLDASFLPGSQMVFFVLNVVEAIGVLMT  467 (477)
Q Consensus       437 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  467 (477)
                      .          |+...+...+++.++..++.
T Consensus       375 ~----------g~~~~~~~~~~~~~~~~~~~  395 (417)
T PRK10489        375 M----------TPVASASASGFGLLIIGVLL  395 (417)
T ss_pred             h----------chhhHHHHHHHHHHHHHHHH
Confidence            7          66677776665555544443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=2.6e-33  Score=274.91  Aligned_cols=416  Identities=14%  Similarity=0.053  Sum_probs=265.1

Q ss_pred             chhHHHHHHHHHHHhhhchhchHhHHHHHHHHh--------cccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcC
Q 011783           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDF--------QIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG  110 (477)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~G  110 (477)
                      ..+......++.+.+.++...+++..|.+.+++        +.++.+      .+++.+++.++..++++++|+++||+|
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~s~~~ig~~~~~~~~G~l~dr~G   83 (479)
T PRK10077         10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSL------LGFCVASALIGCIIGGALGGYCSNRFG   83 (479)
T ss_pred             HHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhH------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            345566777788889999999999999999988        667777      999999999999999999999999999


Q ss_pred             CchhhHHHHHHHHHHHHHHHhh------------hhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHH
Q 011783          111 RKPVIIMGTASVVIFNTLFGLS------------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVST  177 (477)
Q Consensus       111 rr~~~~~~~~~~~i~~~~~~~~------------~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~  177 (477)
                      ||++++++.+++.++.++++++            ++++.+++.|+++|++.|...+. .++++|++|+++|++++++.+.
T Consensus        84 rr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~  163 (479)
T PRK10077         84 RRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQF  163 (479)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHH
Confidence            9999999999999998887763            33677899999999999998887 9999999999999999999999


Q ss_pred             HhHHHHHHHHhHHHHhhhccc-cCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccch--hhhhhhhhhc-
Q 011783          178 AWGIGLIIGPALGGFLAQPAE-KYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDV--SYDALESASA-  253 (477)
Q Consensus       178 ~~~~g~~~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~-  253 (477)
                      +..+|.++++.+++.+..... .+-..++||..|.......++..+..+.+||++++...++++++.  ..++.....+ 
T Consensus       164 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~  243 (479)
T PRK10077        164 AIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLA  243 (479)
T ss_pred             HHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhH
Confidence            999999999888776653211 111134555555211112222333455678876542211111110  0000000000 


Q ss_pred             -----cchhhcccCCchhhhhhcchhhHHHHHHHHHHHhhh----hhhHHHHHHhhcCcccCCccccchhhhHHHHHHHH
Q 011783          254 -----EVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHD----MAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITG  324 (477)
Q Consensus       254 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~  324 (477)
                           +..+...++....+..+... ............+..    .....+.|.+..      ..|.+....+......+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~------~~g~~~~~~~~~~~~~~  316 (479)
T PRK10077        244 TQALQEIKHSLDHGRKTGGKLLMFG-VGVIVIGVMLSVFQQFVGINVVLYYAPEIFK------TLGASTDIALLQTIIVG  316 (479)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhcchh-HHHHHHHHHHHHHHHHhChhHHHHHHHHHHH------HcCCCCchHHHHHHHHH
Confidence                 00000000000000111100 000000000101110    111122233322      26777776777777778


Q ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCC
Q 011783          325 FSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVD  404 (477)
Q Consensus       325 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (477)
                      +..+++.+ +.+++.||+|||+.+..+..+..++.+.+...........+.. ....+....+.....+..+.+++|.+|
T Consensus       317 ~~~~i~~~-~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~p  394 (479)
T PRK10077        317 VINLTFTV-LAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVAL-LSMLFYVAAFAMSWGPVCWVLLSEIFP  394 (479)
T ss_pred             HHHHHHHH-HHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHH-HHHHHHHHHHhccccchhHHHhHhhCC
Confidence            88888887 8999999999999999999888887766654432211111111 111111112222234677889999999


Q ss_pred             cchhhHHhHHHHHHHHHHHHHhhhHHHHHHHH--hhhhccccCCCCchHHHHHHHHHHHHHHHHHhhhhhhccC
Q 011783          405 QDQRGAANGIAMTGMSLFKAAGPAGGGALFSW--AQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRH  476 (477)
Q Consensus       405 ~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (477)
                      +++|+++.|+.+....++.++++.+.+.+.+.  ..+..      ++...|++.+++++++.++.+. ..||++
T Consensus       395 ~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~e~~  461 (479)
T PRK10077        395 NAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHF------HNGFSYWIYGCMGVLAALFMWK-FVPETK  461 (479)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhc------cCccHHHHHHHHHHHHHHHHHh-ccccCC
Confidence            99999999999999999999998887755521  00111      6667888877777777666544 355543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=100.00  E-value=2.1e-34  Score=274.18  Aligned_cols=365  Identities=15%  Similarity=0.082  Sum_probs=256.6

Q ss_pred             HHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHH
Q 011783           49 IVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL  128 (477)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~  128 (477)
                      ..+..+++.....+..|.+.+++|.+..+      .|++.+++.++..+++++.|+++||+|||+++..+.++.+++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~   76 (379)
T TIGR00881         3 GYAAYYLVRKNFALAMPYLVEEIGLSKTD------LGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLF   76 (379)
T ss_pred             hhhHHHHhHHhhhhhhHHHHHHhCCCHhH------HHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHH
Confidence            45567778888899999999999999999      999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHH-hHHHHhhhccccCCccccc
Q 011783          129 FGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGP-ALGGFLAQPAEKYPNLFSS  206 (477)
Q Consensus       129 ~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~-~~~~~l~~~~~~~~~~~~~  206 (477)
                      ++++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|..++| .+++.+.+       ..+|
T Consensus        77 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~~~~  149 (379)
T TIGR00881        77 FGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE-------LYSW  149 (379)
T ss_pred             HHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh-------cCCc
Confidence            999999999999999999999988887 99999999999999999999999999999999 46665554       2344


Q ss_pred             ccccccccc-hHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHHHHHHH
Q 011783          207 ESLFGKFPY-FLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVF  285 (477)
Q Consensus       207 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (477)
                      +..+..... .....+...+..+|.++.++.++++.+.. ++.++..++.+++.++.+...++++++|.++...+..++.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (379)
T TIGR00881       150 HWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPN-EEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFV  228 (379)
T ss_pred             hhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCcc-cccccccccccccccchHHHHHHHHhcchHHHHHHHHHHH
Confidence            443311111 11122223334444443222111111100 0000000001111112223456778899988887777777


Q ss_pred             HhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHH--HHHHHHHH
Q 011783          286 SLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP-IMVARIAGVL--TIPLLTSY  362 (477)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~--~~~~~~~~  362 (477)
                      .........+.|.|..+.     +|+++.+.+.......++.+++.+ +.+++.||..+ ++........  ..+.....
T Consensus       229 ~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  302 (379)
T TIGR00881       229 YVVRTGILDWSPLYLTQE-----KGFSKEKASWAFTLYELGGLVGTL-LAGWLSDKLFNGRRGPLAVFFMALIIVSLLVY  302 (379)
T ss_pred             HHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHcchhHH-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHH
Confidence            776677777888777644     788999999999999999999988 88999998643 3322211111  11111111


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHh
Q 011783          363 PYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWA  437 (477)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  437 (477)
                      ..... .+  .. ......+..+.......+....+..|.+|++.|+++.|+.+....+|..++|.+.|.+.++.
T Consensus       303 ~~~~~-~~--~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  373 (379)
T TIGR00881       303 WLNPA-AN--PL-MDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGF  373 (379)
T ss_pred             hcCcc-hh--HH-HHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhh
Confidence            11101 11  11 12222232333444455555677889999999999999999999999999999999999987

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=100.00  E-value=5.9e-33  Score=266.81  Aligned_cols=382  Identities=21%  Similarity=0.310  Sum_probs=270.1

Q ss_pred             hhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHH
Q 011783           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (477)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~  119 (477)
                      ++....+++..++..+..+...+.+|.+.+++|.+..+.. ..+.|++.+++.++..++++++|+++||+|||+++..+.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   91 (408)
T PRK09874         13 KRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSAL-NMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSA   91 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHH
Confidence            3456677888888899999999999999999998876510 112589999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhHHHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhcccc
Q 011783          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (477)
Q Consensus       120 ~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  199 (477)
                      +..+++.+++.++++++.+++.|++.|++.+...+...++.|++|+++|++++++......+|..++|.+++.+.+    
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~----  167 (408)
T PRK09874         92 LGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLAD----  167 (408)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            9999999999999999999999999999866543338889999999999999999999999999999999999887    


Q ss_pred             CCcccccccccccccc-hHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHH
Q 011783          200 YPNLFSSESLFGKFPY-FLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSS  278 (477)
Q Consensus       200 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (477)
                         .++|+..+..... .+...+...+.++|.+++.++  ++..                   +..+..+.+++++++..
T Consensus       168 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------------------~~~~~~~~~~~~~~~~~  223 (408)
T PRK09874        168 ---SYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSK--KEML-------------------HMREVVTSLKNPKLVLS  223 (408)
T ss_pred             ---HhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccc--hhhh-------------------HHHHHHHhCcCCchHHH
Confidence               3455554421111 111222222334443211110  0000                   00112334566665443


Q ss_pred             H-HHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 011783          279 I-IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIP  357 (477)
Q Consensus       279 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  357 (477)
                      . ...............+++.|..+..  ...+......+.+....+++.+++.. ..+++.||+++|+.+..+..+..+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~l~~~~~~~-~~g~l~dr~g~~~~~~~~~~~~~~  300 (408)
T PRK09874        224 LFVTTLIIQVATGSIAPILTLYVRELA--GNVSNIAFISGMIASVPGVAALLSAP-RLGKLGDRIGPEKILITALIFSVL  300 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccccchhHHHHHHHHHH
Confidence            2 2223333333344455555554320  00010112345566666777777777 789999999999998888776665


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHh
Q 011783          358 LLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWA  437 (477)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  437 (477)
                      ..+.......     .+ ...+..++.+++.+...+...+...+..|++.+|+.+++.+....+|..+||.++|.+.+..
T Consensus       301 ~~~~~~~~~~-----~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~  374 (408)
T PRK09874        301 LLIPMSFVQT-----PL-QLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY  374 (408)
T ss_pred             HHHHHHHhcc-----HH-HHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc
Confidence            5554433321     11 22333344456667778888888888899999999999999999999999999999999887


Q ss_pred             hhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          438 QKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       438 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                                ||+..|++.+++.+++.+..++
T Consensus       375 ----------g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        375 ----------GFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             ----------chhHHHHHHHHHHHHHHHHHHH
Confidence                      8999999999888888777655

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=100.00  E-value=5.1e-33  Score=266.52  Aligned_cols=355  Identities=16%  Similarity=0.125  Sum_probs=260.6

Q ss_pred             HHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHH
Q 011783           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (477)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~  122 (477)
                      ...+.+..++..++...+.|.+|.+.+++|.+..+      .++..+.+.+++.+++++.|+++||+|||+++..+.++.
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~   88 (406)
T PRK15402         15 PLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEW------VPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFF   88 (406)
T ss_pred             HHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            33556666777778889999999999999999999      999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCC
Q 011783          123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (477)
Q Consensus       123 ~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~  201 (477)
                      +++.+.+.++++++.+++.|+++|++.+...+. .+++.|.+|+++|.+.+++......+|..+||.+++.+.+      
T Consensus        89 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~------  162 (406)
T PRK15402         89 ILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIH------  162 (406)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            999999999999999999999999998887777 8999999999999999999988889999999999999887      


Q ss_pred             cccccccccccccch-HHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHH
Q 011783          202 NLFSSESLFGKFPYF-LPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSII  280 (477)
Q Consensus       202 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (477)
                       .++|+..+...... +...+......||++++.+++   .+                ..+.....++++++|.++...+
T Consensus       163 -~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----------------~~~~~~~~~~~~~~~~~~~~~~  222 (406)
T PRK15402        163 -VLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEK---LS----------------LKELGRDYKLVLKNRRFVAGAL  222 (406)
T ss_pred             -ccCccHHHHHHHHHHHHHHHHHHHhCCCCCcccccc---cc----------------HHHHHHHHHHHHcCcHHHHHHH
Confidence             33444444111111 111111222334432211100   00                0011224567888998887776


Q ss_pred             HHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 011783          281 VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLT  360 (477)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  360 (477)
                      ..++.......+....|.+..+.     +|+++.+.+.......++.+++.. +.+++.||+++|+....+.++..++..
T Consensus       223 ~~~~~~~~~~~~~~~~p~~~~~~-----~g~~~~~~g~~~~~~~~~~~~g~~-~~g~l~~r~~~~~~~~~~~~~~~~g~~  296 (406)
T PRK15402        223 ALGLVSLPLLAWIALSPVILISG-----EQLSSYEYGLLQVPVFGALIAGNL-TLARLTSRRPLRSLIRMGLWPMVAGLL  296 (406)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            66665554455555566665433     788898888888777777888877 889999999999998888877776666


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHh
Q 011783          361 SYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWA  437 (477)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  437 (477)
                      .+.......... +........+.+++.+...+........ .+++++|++.++.+..+.++..+|+.+.+.+++..
T Consensus       297 ~~~~~~~~~~~~-~~~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~  371 (406)
T PRK15402        297 LAALATVISSHA-YLWLTAGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGG  371 (406)
T ss_pred             HHHHHHHccccc-HHHHHHHHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            555443211111 1122233333345555555555554444 44589999999999999999999999999998766

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=6.9e-34  Score=279.10  Aligned_cols=424  Identities=13%  Similarity=0.084  Sum_probs=266.7

Q ss_pred             CCchhHHHHHHHHHHHhhhchhchHhHHHHHHHHh-----cccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCC
Q 011783           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDF-----QIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR  111 (477)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Gr  111 (477)
                      +..++.+.++.++.+.+.++...++...|.+.+++     +.+..+      .+++.+.+.++..++++++|+++||+||
T Consensus        12 ~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ig~~ig~~~~g~l~d~~Gr   85 (502)
T TIGR00887        12 WQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSV------SAAVNGSASIGTLAGQLFFGWLADKLGR   85 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            34445566778888999999999999999877753     222333      7899999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHH
Q 011783          112 KPVIIMGTASVVIFNTLFGLSVN------FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLI  184 (477)
Q Consensus       112 r~~~~~~~~~~~i~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~  184 (477)
                      |+++.++.++..++.++++++++      ++.+++.|+++|++.|...+. ..+++|++|+++|++++++.+....+|..
T Consensus        86 r~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~  165 (502)
T TIGR00887        86 KRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGIL  165 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999888765      789999999999999998877 99999999999999999999999999999


Q ss_pred             HHHhHHHHhhhccc-------cC---------CcccccccccccccchHHHHHHHHHhhccccccCCCCCCc---cchhh
Q 011783          185 IGPALGGFLAQPAE-------KY---------PNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDS---CDVSY  245 (477)
Q Consensus       185 ~g~~~~~~l~~~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~  245 (477)
                      +++.++..+.....       ++         ...++||..+...........+..+.+||+|++...++++   .++..
T Consensus       166 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~  245 (502)
T TIGR00887       166 AGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDM  245 (502)
T ss_pred             HHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHH
Confidence            99999877643110       00         0113566665211111222334445789999873322111   11111


Q ss_pred             hhhhh-----hhccch---hhcccCCchhhhhhcch---hhHHHHH----HHHHHHhhhhhhHHHHHHhhcCcccCCccc
Q 011783          246 DALES-----ASAEVK---EEEGREATPKKSLLKNW---PLMSSII----VYCVFSLHDMAYSEIFSLWANSPKKLGGLN  310 (477)
Q Consensus       246 ~~~~~-----~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  310 (477)
                      .+..+     +.++.+   ++++....+++++++++   +.+...+    ..+......++...+.|.++..      .|
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~------~G  319 (502)
T TIGR00887       246 SAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA------IG  319 (502)
T ss_pred             HHHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH------Hc
Confidence            11100     000000   00011112466666532   2211111    1111111222222233433332      45


Q ss_pred             cchhhhH-----------H-HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 011783          311 YSTQMVG-----------E-VLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLN  378 (477)
Q Consensus       311 ~~~~~~g-----------~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (477)
                      +++.+.+           . ......++.+++.+ +.+++.||+|||+.+..+..+..+++..+............... 
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~-~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-  397 (502)
T TIGR00887       320 YSPPAATNNAYEELYKTAVGNLIIALAGTVPGYW-VTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAI-  397 (502)
T ss_pred             CCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH-
Confidence            5443211           1 12233344455555 88999999999999888877777666555443221111111111 


Q ss_pred             HHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHH
Q 011783          379 CASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNV  458 (477)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~  458 (477)
                       ......++..+..+..+.+..|.+|++.|+++.|+.+.+..++++++|.+.+.+.+....+.......++...|++.++
T Consensus       398 -~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~  476 (502)
T TIGR00887       398 -YVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFAL  476 (502)
T ss_pred             -HHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHH
Confidence             1111112233445666778899999999999999999999999999999999998743111000000045567788888


Q ss_pred             HHHHHHHHHhhhhhhccCC
Q 011783          459 VEAIGVLMTFKPFLAQRHD  477 (477)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~  477 (477)
                      +++++.+..+  ++||+++
T Consensus       477 ~~~~~~i~~~--~lpEt~~  493 (502)
T TIGR00887       477 FMFLGILFTL--LIPETKG  493 (502)
T ss_pred             HHHHHHHHhe--EeccCCC
Confidence            8777766543  3677653

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=100.00  E-value=6.2e-35  Score=254.88  Aligned_cols=369  Identities=35%  Similarity=0.511  Sum_probs=269.2

Q ss_pred             hchHhHHHHHHHHhcccccchh--hhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhhhhH
Q 011783           58 SSLFPFLYFMIKDFQIAKREED--IGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF  135 (477)
Q Consensus        58 ~~~~~~~~~~~~~~~~s~~~~~--~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~  135 (477)
                      ....+..-.+.++|+.-..+++  ...+.|.+.+.+.+.+.+.++.+|.++||+|||++++++++..++...+.+.++||
T Consensus        42 ~~L~~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F  121 (451)
T KOG2615|consen   42 SSLYPFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNF  121 (451)
T ss_pred             cchhHHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666677788876555544  56679999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcccchhhHHHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhcc---ccCCccccccccccc
Q 011783          136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA---EKYPNLFSSESLFGK  212 (477)
Q Consensus       136 ~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---~~~~~~~~~~~~~~~  212 (477)
                      ..++++|++.|+..|...++.++++|++++|+|+++++..+.++++|.++||.+||++....   ..++..+.  ..+ .
T Consensus       122 ~afv~aR~l~Gi~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP--~~~-v  198 (451)
T KOG2615|consen  122 AAFVLARFLGGIFKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALP--CLL-V  198 (451)
T ss_pred             HHHHHHHHhhhhccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHH--HHH-H
Confidence            77777799999999999999999999999999999999999999999999999999998722   11111110  000 0


Q ss_pred             ccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHHHHHHHHhhhhhh
Q 011783          213 FPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAY  292 (477)
Q Consensus       213 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (477)
                      ..+.........+++||+.+.++.. ++.+..    .+..++.++..+.........+||++....+..+..+....+.+
T Consensus       199 ~i~a~~~v~~~~~~lpETL~~rk~~-~~~~~~----~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly  273 (451)
T KOG2615|consen  199 FILAAGDVTFFPWFLPETLPLRKRN-DEHSTL----QEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLY  273 (451)
T ss_pred             HHHHHHHHHHHHHhCCccccchhhc-ccccch----hhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHH
Confidence            0001111234456788887665544 221111    11111111111111222345667877777777777777777888


Q ss_pred             HHHHHHhhcCcccC--CccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHHHHHHHHh
Q 011783          293 SEIFSLWANSPKKL--GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG--PIMVARIAGVLTIPLLTSYPYIAML  368 (477)
Q Consensus       293 ~~~~~~~~~~~~~~--~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  368 (477)
                      ..+++.|..+....  +++|+++.+.|.+++..++.+.+.+..+.++ .+|.+  .+..+.....++...++.+..... 
T Consensus       274 ~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~-l~~~~~~~~a~l~~~l~~~vP~~llls~~~~-  351 (451)
T KOG2615|consen  274 LELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPI-LPRYKGNIKAVLLFSLLLIVPAFLLLSLART-  351 (451)
T ss_pred             HHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhcccc-ccccccchhhHHHHHHHHHHHHHHHHhcccc-
Confidence            88888777765544  7799999999999999999999988744443 34433  344444444444444444433322 


Q ss_pred             hhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhc
Q 011783          369 SGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRL  441 (477)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~  441 (477)
                           ...+.....+..+......+....++.+..|+++||+++|+..+.+.++.++||.+.|.+..|....+
T Consensus       352 -----~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~  419 (451)
T KOG2615|consen  352 -----PVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQ  419 (451)
T ss_pred             -----chhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCC
Confidence                 23566666677788888888999999999999999999999999999999999999999998875443

>PRK15075 citrate-proton symporter; Provisional

Probab=100.00  E-value=1.5e-32  Score=264.85  Aligned_cols=363  Identities=15%  Similarity=0.111  Sum_probs=241.8

Q ss_pred             hhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHH-HHHH-----HHHHHHHhhhhhhhhhhcCCch
Q 011783           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYV-GSSF-----MFGRALTSVFWGLVADRYGRKP  113 (477)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~-~s~~-----~~~~~~~~~~~G~l~Dr~Grr~  113 (477)
                      ++....++++.+++++|...++...|.+.+|++.++.+      .+.+ .+..     .++..+++++.|+++||+|||+
T Consensus        14 ~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~   87 (434)
T PRK15075         14 ARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNE------FASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRK   87 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc------hHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHH
Confidence            34566888999999999999999999999999988877      5433 2222     3333578999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHH
Q 011783          114 VIIMGTASVVIFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLI  184 (477)
Q Consensus       114 ~~~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~  184 (477)
                      +++.+.++++++.++++++++++        .+++.|+++|++.+...+. ..+++|++|+++|++++++.....++|..
T Consensus        88 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~  167 (434)
T PRK15075         88 GLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVV  167 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHH
Confidence            99999999999999999999887        4689999999999988876 89999999999999999999999999998


Q ss_pred             HHHhHHHHhhhccccC-CcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCC
Q 011783          185 IGPALGGFLAQPAEKY-PNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA  263 (477)
Q Consensus       185 ~g~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (477)
                      +++.+++.+.....++ ...++||..|. .   ....+...+.+.+.+++.    +  +.. ++   .      ++.+..
T Consensus       168 ~g~~~g~~l~~~~~~~~~~~~gWr~~f~-~---~~~~~~~~~~~~~~~~e~----~--~~~-~~---~------~~~~~~  227 (434)
T PRK15075        168 FAALLGYLLNQWLSPAQMAEWGWRIPFL-I---GCLIVPFIFLIRRSLEET----E--EFL-AR---K------HRPSMR  227 (434)
T ss_pred             HHHHHHHHHHHhCCHHHHhccchHHHHH-H---HHHHHHHHHHHHHhcCCC----H--HHH-Hh---h------hccccc
Confidence            8888888764311100 01346666551 1   111111122222111110    0  000 00   0      001111


Q ss_pred             chhhhhhcchhhHHH-HHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011783          264 TPKKSLLKNWPLMSS-IIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL  342 (477)
Q Consensus       264 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~  342 (477)
                      ...+...+++..+.. +...++..........+.|.|+++.     +|++..+.++......++.+++.+ +.+++.||+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~Dr~  301 (434)
T PRK15075        228 EIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTV-----LHLSAADSLLVTLCVGVSNFIWLP-IGGALSDRI  301 (434)
T ss_pred             cHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence            223334445444432 2222233333445556677776643     688888888888888888888888 899999999


Q ss_pred             cchhHHHHHHHHHHHHHH-HHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHH-
Q 011783          343 GPIMVARIAGVLTIPLLT-SYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMS-  420 (477)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-  420 (477)
                      +||+....+..+..+... .+.....  ..... .......+.+++.+...+....+..|.+|++.|+++.|+.+.... 
T Consensus       302 g~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~  378 (434)
T PRK15075        302 GRRPVLIAFTVLAILTAYPALSWLVA--APSFA-RMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATA  378 (434)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHc--CCchH-HHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHH
Confidence            999988776544332221 1111111  11111 111111222334445555566788999999999999999766554 


Q ss_pred             HHHHHhhhHHHHHHHHh
Q 011783          421 LFKAAGPAGGGALFSWA  437 (477)
Q Consensus       421 ~g~~~~~~~~g~l~~~~  437 (477)
                      +++.++|.+.|++.|+.
T Consensus       379 ~~g~~~p~~~g~i~~~~  395 (434)
T PRK15075        379 IFGGFTPAISTWLIHVT  395 (434)
T ss_pred             HHhhhHHHHHHHHHHhc
Confidence            46888999999999987

>PRK10133 L-fucose transporter; Provisional

Probab=100.00  E-value=1e-32  Score=264.79  Aligned_cols=380  Identities=14%  Similarity=0.112  Sum_probs=277.1

Q ss_pred             hhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHH
Q 011783           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (477)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~  119 (477)
                      ...+..+.+..++..+......+.+|.+++++|.++.+      .|++.+.+.+++.+++++.|++.||+|||+++..+.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~------~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~   98 (438)
T PRK10133         25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQ------AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGL   98 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            34566777778888888999999999999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH---HhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhh
Q 011783          120 ASVVIFNTLF---GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (477)
Q Consensus       120 ~~~~i~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (477)
                      ++++++.+++   ..+++++.+++.|+++|++.|...+. ++++.|+.|+++|.+.++..+..+.+|..+||.+++.+..
T Consensus        99 ~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~  178 (438)
T PRK10133         99 FLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLIL  178 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999875   46789999999999999999998887 8999998887777778999999999999999999887651


Q ss_pred             cc-----------------ccCCcc--cccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccch
Q 011783          196 PA-----------------EKYPNL--FSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVK  256 (477)
Q Consensus       196 ~~-----------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (477)
                      ..                 .+||+.  .+||..|.... ....++..++.....++. +.+ ++.+.             
T Consensus       179 ~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~-~v~~~~~~~~~~~~~p~~-~~~-~~~~~-------------  242 (438)
T PRK10133        179 SNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIV-AIVLLVALLIMLTKFPAL-QSD-NHSDA-------------  242 (438)
T ss_pred             cCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCC-Ccc-ccccc-------------
Confidence            11                 146554  36766651001 111111111111111110 000 00000             


Q ss_pred             hhcccCCchhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 011783          257 EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYP  336 (477)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  336 (477)
                       ++.+.....++++|+|.++...+..+++.........+.+.|+.+    +.+|+++.+++..+....++.++++. ..+
T Consensus       243 -~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~----~~~g~s~~~ag~~~~~~~~~~~vG~~-~~g  316 (438)
T PRK10133        243 -KQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVE----EIPGMTAGFAANYLTGTMVCFFIGRF-TGT  316 (438)
T ss_pred             -cccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hcCCCCHHHHHHHHHHHHHHHHHHHH-HHH
Confidence             011112345678899988877666666666666566666666421    23799999999999999999999998 999


Q ss_pred             HHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHH
Q 011783          337 FLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAM  416 (477)
Q Consensus       337 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~  416 (477)
                      ++.||+++|+.+..+..+..+.++...+...   .  .  ......+.+++.+..+|..++...+..|+ +.+++.++..
T Consensus       317 ~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~---~--~--~~~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~~  388 (438)
T PRK10133        317 WLISRFAPHKVLAAYALIAMALCLISAFAGG---H--V--GLIALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIV  388 (438)
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHHcCC---h--H--HHHHHHHHHHHHHHHHHHHHHHHHcccch-hhccchhHHh
Confidence            9999999999988887766655544433221   1  1  12233445778899999999999997764 5788888876


Q ss_pred             HHHHHHHHHhhhHHHHHHHHhhhhccccCCCC-chHHHHHHHHHHHHHHHH
Q 011783          417 TGMSLFKAAGPAGGGALFSWAQKRLDASFLPG-SQMVFFVLNVVEAIGVLM  466 (477)
Q Consensus       417 ~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~  466 (477)
                       ....|+.++|.+.|.+.|..          | .+..|++...+.+.....
T Consensus       389 -~~~~g~~~~~~i~G~l~~~~----------g~~~~~~~v~~~~~~~~~~~  428 (438)
T PRK10133        389 -MTIIGGGIVTPVMGFVSDAA----------GNIPTAELIPALCFAVIFIF  428 (438)
T ss_pred             -HHhccchHHHHHHHHHHHhc----------cchHHHHHHHHHHHHHHHHH
Confidence             45578899999999998876          5 556776655444444443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=100.00  E-value=9.3e-33  Score=262.92  Aligned_cols=371  Identities=16%  Similarity=0.209  Sum_probs=266.0

Q ss_pred             HHHHHHHHHhhhchhchHhHHH-HHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHH
Q 011783           44 FSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (477)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~  122 (477)
                      .++....++..++.....|.++ ++.+++|.+..+      +|++.+...++..+.+++.|+++||+|||+++..+.++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~   86 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVM------VGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMR   86 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHH------HHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHH
Confidence            4556777788888888888887 567899999999      999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCC
Q 011783          123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (477)
Q Consensus       123 ~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~  201 (477)
                      +++.+++.++++++++++.|+++|++.+...|. .+++.|++|+|+|++++++.+...++|..+||.+++++.+  .+|+
T Consensus        87 ~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~--~g~~  164 (400)
T PRK11646         87 AAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ--YDFR  164 (400)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHH
Confidence            999999999999999999999999998888887 9999999999999999999999999999999999999974  2444


Q ss_pred             cccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHHH
Q 011783          202 NLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIV  281 (477)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (477)
                      +.+......     .+...+......||..   + + +.                  +++....+++.+++|.++...+.
T Consensus       165 ~~f~~~~~~-----~~~~~i~~~~~~~~~~---~-~-~~------------------~~~~~~~~~~~~~~~~~~~~~~~  216 (400)
T PRK11646        165 LVCATGAVL-----FVLAAAFNAWLLPAYK---L-S-TV------------------RTPVREGMTRVLRDKRFVTYVLT  216 (400)
T ss_pred             HHHHHHHHH-----HHHHHHHHHHhCCccc---c-c-cc------------------chhhHHHHHHHHcCchHHHHHHH
Confidence            433321111     1111112222333211   0 0 00                  00111245677888887765555


Q ss_pred             HHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 011783          282 YCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTS  361 (477)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  361 (477)
                      .+...........+.|.|..+      .+.++.+.+.+.+..++..........++..||.+.++.+..+..+..++...
T Consensus       217 ~~~~~~~~~~~~~~~p~~~~~------~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~  290 (400)
T PRK11646        217 LTGYYMLAVQVMLMLPIMVND------IAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFP  290 (400)
T ss_pred             HHHHHHHHHHHHHhhhhhHHh------hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence            444333333334456666544      34467788888888777776665546666667777666666666666655554


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhc
Q 011783          362 YPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRL  441 (477)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~  441 (477)
                      +.....   .  + .......+.+.+.....|...++..+.+|+++||+++|+.+....+|..+||.+.|.+.|+.+...
T Consensus       291 l~~~~~---~--~-~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~  364 (400)
T PRK11646        291 IGMVSN---L--Q-QLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALN  364 (400)
T ss_pred             HHHhhh---H--H-HHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcC
Confidence            443332   1  1 112222233445556677888899999999999999999999999999999999999999864321


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHHHh
Q 011783          442 DASFLPGSQMVFFVLNVVEAIGVLMTF  468 (477)
Q Consensus       442 ~~~~~~g~~~~~~~~~~~~~~~~~~~~  468 (477)
                            +....++..+++.+++.+...
T Consensus       365 ------~~~~~~~~~~~~~~~~~~~~~  385 (400)
T PRK11646        365 ------QPELPWMMLGIIGLITLLALY  385 (400)
T ss_pred             ------CcchHHHHHHHHHHHHHHHHH
Confidence                  245666666666666655544

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=100.00  E-value=1.4e-32  Score=262.11  Aligned_cols=351  Identities=16%  Similarity=0.139  Sum_probs=259.7

Q ss_pred             hHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHH
Q 011783           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (477)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~  120 (477)
                      +.+..+....++..++.....+.+|.+.+++|.++++      .+++.+++.++..+++++.|+++||+|||+++..+.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~   78 (385)
T TIGR00710         5 AFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASI------VQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLF   78 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHH
Confidence            4455555556677788889999999999999999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhcccc
Q 011783          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (477)
Q Consensus       121 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  199 (477)
                      +.+++.+++.++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+....+|..++|.+++.+.+    
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~----  154 (385)
T TIGR00710        79 IFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILV----  154 (385)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            99999999999999999999999999999988887 9999999999999999999999999999999999999887    


Q ss_pred             CCcccccccccccccch-HHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHH
Q 011783          200 YPNLFSSESLFGKFPYF-LPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSS  278 (477)
Q Consensus       200 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (477)
                         .++|+..+...... ....+......||+++.+++    .+                .++.....++.+|+|+++..
T Consensus       155 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----------------~~~~~~~~~~~~~~~~~~~~  211 (385)
T TIGR00710       155 ---WLSWHAIFAFLSLAGILLSALIFFILPETLPYEAR----IQ----------------ISTYFETFLLLLKSKMFWGY  211 (385)
T ss_pred             ---HcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccc----CC----------------HHHHHHHHHHHHcCchhHHH
Confidence               34555544211111 11112222233443221110    00                00111245667888888877


Q ss_pred             HHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 011783          279 IIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPL  358 (477)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  358 (477)
                      .+...+.......+..+.|.+..+.     +|.++.+.+.+.....++.++++. +.+++.||+++|+.+..+..+..++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~~~~~  285 (385)
T TIGR00710       212 ALIYGASFGGFFAFFSGAPFVYIDI-----MGVSPSVFGLLFALNIIAMIFGGF-LNGRFIKKWGAKSLLRMGLILFAVS  285 (385)
T ss_pred             HHHHHHHHHHHHHHHHcChHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            6666555544455555556555433     788999999999999999999988 8999999999999888887776666


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHH
Q 011783          359 LTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA  432 (477)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~  432 (477)
                      ...+........ ..+........+.+++.....+.......|..| ++++++.++.+.....++.+.+.+.+.
T Consensus       286 ~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~  357 (385)
T TIGR00710       286 AVLLEITAILGL-GSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSL  357 (385)
T ss_pred             HHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            555544332111 112222333344455566677777777778776 679999999998887766666666663

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK03893 putative sialic acid transporter; Provisional

Probab=100.00  E-value=6.3e-33  Score=273.25  Aligned_cols=391  Identities=14%  Similarity=0.117  Sum_probs=263.8

Q ss_pred             CCchhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhH
Q 011783           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (477)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~  116 (477)
                      +.+++.+..+++..+++.++.....+.+|.+.+++|.+..+      .+++.+.+.+++.+++++.|+++||+|||+++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~   89 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQ------AASLISAAFISRWFGGLLLGAMGDRYGRRLAMV   89 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence            34556777888999999999999999999999999999999      999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhh
Q 011783          117 MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (477)
Q Consensus       117 ~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (477)
                      .+.++.+++.+++++++|++.+++.|++.|++.+...+. .+++.|++|+++|++++++...+..+|..++|.+++.+.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  169 (496)
T PRK03893         90 ISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVP  169 (496)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999998887776 9999999999999999999999999999999999999887


Q ss_pred             ccccCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCc------hhhhh
Q 011783          196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT------PKKSL  269 (477)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~  269 (477)
                             .++|+..|..........+.....+||.++++++++++.+ . ++..+.....+.+......      .....
T Consensus       170 -------~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (496)
T PRK03893        170 -------VWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAP-V-RTMVDILYRGEHRIINILLTLAAAAALWFC  240 (496)
T ss_pred             -------cCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhcccccc-c-hhHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence                   4455555511000011111111223333221111110000 0 0000000000000000000      00000


Q ss_pred             -------------------------------hcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHH
Q 011783          270 -------------------------------LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGE  318 (477)
Q Consensus       270 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~  318 (477)
                                                     .+.+.........+...........+.|.|+.+.     +|++..+.+.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-----~g~~~~~~g~  315 (496)
T PRK03893        241 FAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTD-----LGYDPHTVAN  315 (496)
T ss_pred             HHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhh-----cCCCHHHHHH
Confidence                                           0000000111111111111122345667776533     7899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHH
Q 011783          319 VLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFIL  398 (477)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (477)
                      +.+...++.+++.. +.+++.||+++|+.+..+..+..+..+.+..... .  ..+ ......++.++...+..+....+
T Consensus       316 ~~~~~~~~~~~g~~-~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~-~~~~~~~~~~~~~~~~~~~~~~~  390 (496)
T PRK03893        316 VLFFSGFGAAVGCC-VGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGG-A--NVW-VLGLLLFFQQMLGQGISGLLPKL  390 (496)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-c--HHH-HHHHHHHHHHHHhcccchhhHHH
Confidence            99999999999988 8999999999999887776555544433222211 1  111 11111121122233344556678


Q ss_pred             HhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHH
Q 011783          399 QNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAI  462 (477)
Q Consensus       399 ~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  462 (477)
                      .++.+|+++||+++|+.+....+|+.++|.+.|.+.+..          |++..+...++++.+
T Consensus       391 ~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~----------g~~~~~~~~~~~~~~  444 (496)
T PRK03893        391 IGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRL----------DLGTALASLSFSLTF  444 (496)
T ss_pred             HHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccC----------ChHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999999987          777776555544333

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=100.00  E-value=1e-32  Score=266.87  Aligned_cols=394  Identities=14%  Similarity=0.059  Sum_probs=267.9

Q ss_pred             CCchhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhH
Q 011783           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (477)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~  116 (477)
                      ..+|..+...++...........+...+|.+.+++|.+.++      .+++.+.+.++..++.++.|+++||+|||++++
T Consensus        15 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~------~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~   88 (455)
T TIGR00892        15 GWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSE------TAWISSIMLAVLYAGGPISSILVNRFGCRPVVI   88 (455)
T ss_pred             CcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhH------HHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHH
Confidence            34455555555555555555566778899999999999999      999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHH-HHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhh
Q 011783          117 MGTASVVIFNTLFGLSVNFWMAVL-TRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (477)
Q Consensus       117 ~~~~~~~i~~~~~~~~~~~~~l~~-~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (477)
                      .+.++.+++.++++++++++.+++ .|+++|++.+...+. .+++.++++ ++|+++.++.+.+..+|..++|.+++.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~  167 (455)
T TIGR00892        89 AGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLF  167 (455)
T ss_pred             hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            999999999999999999998875 579999998875444 888899996 78999999999999999999999999998


Q ss_pred             hccccCCcccccccccccccchHHHHHHHHHhh-ccccccCCCCCCccchhhhhhhhhh-ccchhhcccCCchhhhhhcc
Q 011783          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAF-GETLHRHNDDDDSCDVSYDALESAS-AEVKEEEGREATPKKSLLKN  272 (477)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  272 (477)
                      +       .++||..|...........+..+++ ++.+.+...+.++.+...++...+. ......++..+....+++++
T Consensus       168 ~-------~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (455)
T TIGR00892       168 E-------SFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTH  240 (455)
T ss_pred             H-------HhChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcC
Confidence            7       4556655521111111111122222 2111110000000000000000000 00000000001111257788


Q ss_pred             hhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--cchhHHHH
Q 011783          273 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL--GPIMVARI  350 (477)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~  350 (477)
                      |+++......++..........+++.|..+      .|++..+.+.+.+..+++.+++++ +.+++.||.  ++++....
T Consensus       241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~------~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~d~~~~~~~~~~~~  313 (455)
T TIGR00892       241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAKD------KGVDEYEAAFLLSIIGFVDIFARP-SCGLIAGLKWIRPHVQYLF  313 (455)
T ss_pred             chHHHHHHHHHHHHHHccchHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHhcccccCHHHHHHH
Confidence            988887777776666666666677777653      688999999999999999999888 888998873  33333333


Q ss_pred             HH--HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhh
Q 011783          351 AG--VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPA  428 (477)
Q Consensus       351 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~  428 (477)
                      +.  .+.++..+......   +  .+ .+.+..++.+++.+...+...++..+.+|++++++++|+++...++|++++|.
T Consensus       314 ~~~~~~~~l~~ll~~~~~---~--~~-~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~  387 (455)
T TIGR00892       314 SFALLFNGLTHLLCALAG---D--YT-GLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPP  387 (455)
T ss_pred             HHHHHHHHHHHHHHHHhc---h--HH-HHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHcccc
Confidence            22  22222222222111   1  11 22333444456666777788888899999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHH
Q 011783          429 GGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM  466 (477)
Q Consensus       429 ~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  466 (477)
                      ++|.+.+..         ++|+..|++.+++.+++.+.
T Consensus       388 i~G~l~~~~---------g~~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       388 LAGRLVDAT---------KNYKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             ceeeeehhc---------CCcchHHHHhhHHHHHHHHH
Confidence            999999876         14778888887777666553

>TIGR00899 2A0120 sugar efflux transporter

Probab=100.00  E-value=3.2e-32  Score=258.71  Aligned_cols=364  Identities=14%  Similarity=0.130  Sum_probs=260.8

Q ss_pred             HHHHHHhhhchhchHhHHHH-HHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHH-HHHHHHH
Q 011783           47 WIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM-GTASVVI  124 (477)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~-~~~~~~i  124 (477)
                      .+..++..++.+...|.+|. +.+++|.++.+      .|++.+++.+...+.+++.|+++||+||||.++. +.+...+
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~   76 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAM------IGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAAL   76 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            45677888888999999995 56889999999      9999999999999999999999999999987654 5666677


Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhH--HHHHHHHhHHHHHHHHhHHHHhhhccccCC
Q 011783          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALG--LSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (477)
Q Consensus       125 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~  201 (477)
                      +.+++++++|++.+++.|++.|.+.+...|. .+++.|+.|+++|++.  .+......++|.++||.+++.+.+      
T Consensus        77 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~------  150 (375)
T TIGR00899        77 ACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL------  150 (375)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH------
Confidence            7888889999999999999999887777777 8888999888777755  578888899999999999999987      


Q ss_pred             cccccccccccccch-HHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHH
Q 011783          202 NLFSSESLFGKFPYF-LPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSII  280 (477)
Q Consensus       202 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (477)
                       .++|+..|...... +...+...+.+||.++++++++   +                    ..+.++.+++++++....
T Consensus       151 -~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------------------~~~~~~~~~~~~~~~~~~  206 (375)
T TIGR00899       151 -GFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGAL---T--------------------RLEVRGLLASRDTRLLFV  206 (375)
T ss_pred             -hcccHHHHHHHHHHHHHHHHHHHHhCCCcccCccccc---C--------------------cchhhhhhcCcchHHHHH
Confidence             45566555211111 1122222334565433211100   0                    012233556666665554


Q ss_pred             HHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 011783          281 VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLT  360 (477)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  360 (477)
                      ..++.......+....|.|..+.     +|.++.+.+.+.........++.. +.+++.||+++|+.+..+..+..+...
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~~-~~g~l~~r~g~~~~~~~~~~~~~~~~~  280 (375)
T TIGR00899       207 ACTLMWGCNILYIINMPLLIIHE-----LGLPDKLAGLMMGTAAGLEIPFML-LAGYLIKRFGKRRLMLLAALAGVAFYT  280 (375)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHH-hHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            44444333334444566665433     788898899888777767777766 889999999999988777665544443


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 011783          361 SYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKR  440 (477)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~  440 (477)
                      .+....+     .+ .......+.+++.+...+....+..|..|+ ++++++|+.+...++|..++|.+.|.+.+..   
T Consensus       281 ~~~~~~~-----~~-~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~---  350 (375)
T TIGR00899       281 GLAADNS-----LW-ALLMLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERW---  350 (375)
T ss_pred             HHHHHHH-----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence            3322221     11 222233333455556667777788887775 5779999999999999999999999999987   


Q ss_pred             ccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          441 LDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       441 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                             |++..|.+.+++.+++.++..+
T Consensus       351 -------g~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       351 -------SYHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             -------cchhHHHHHHHHHHHHHHHHhe
Confidence                   8889999988888888776654

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=5.7e-33  Score=269.92  Aligned_cols=389  Identities=12%  Similarity=0.068  Sum_probs=255.9

Q ss_pred             chhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHH
Q 011783           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (477)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~  118 (477)
                      +++.+...+...++...+.....+.+|.+.+|+|.+..+      .+++.+.+.+++.+++++.|+++||+|||+++..+
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~  107 (476)
T PLN00028         34 HMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSD------IGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFL  107 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence            345566667777777777788889999999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhHHHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhcc-
Q 011783          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA-  197 (477)
Q Consensus       119 ~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-  197 (477)
                      .++++++.++++++++++.+++.|++.|++.+...+...+++|++|+++|++++++.....++|..+++.+.+.+.... 
T Consensus       108 ~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~  187 (476)
T PLN00028        108 LMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIK  187 (476)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999987766555678899999999999999998888888887777665553211 


Q ss_pred             -ccCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhH
Q 011783          198 -EKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLM  276 (477)
Q Consensus       198 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (477)
                       .+.....+||+.|...........+..+.+++..+..+     .+    +.+++   .+.++.+....+++.++++++|
T Consensus       188 ~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~-----~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~  255 (476)
T PLN00028        188 DAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGN-----YR----ELKKS---GTMPKDSFSKVLRYGVTNYRTW  255 (476)
T ss_pred             hcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCc-----hh----hHHhc---CccccccHHHHHHHHHcCchhH
Confidence             00011235555552111112222222233332211100     00    00000   0000111112356677888888


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchh-------HHH
Q 011783          277 SSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM-------VAR  349 (477)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~  349 (477)
                      ...+.+++.......+..+.|.|+.+.     +|+++.+++.+.+...++.+++++ +.++++||+++|+       ...
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~a~~~~~~~~~~~~ig~~-~~G~lsDr~~~r~~~~~r~~~~~  329 (476)
T PLN00028        256 ILALTYGYSFGVELTMDNIIAEYFYDR-----FGLSLETAGAIAASFGLMNLFARP-AGGYLSDVAARRFGMRGRLWALW  329 (476)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHhcCcchhHHHHH
Confidence            777766655555555666777776543     799999999999999999999998 9999999998652       221


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhH
Q 011783          350 IAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAG  429 (477)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~  429 (477)
                      ....+..+.+..+....   +.  . .......+.+++.....+...++..+. +++.+|++.|+.+....+|++++|.+
T Consensus       330 ~~~~l~~i~~~~~~~~~---~~--~-~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~g~lg~~i~~~l  402 (476)
T PLN00028        330 IVQTLGGVFCIWLGRAN---SL--G-AAIVVMILFSIFVQAACGATFGIVPFV-SRRSLGVISGLTGAGGNVGAVLTQLL  402 (476)
T ss_pred             HHHHHHHHHHHHhcccc---hH--H-HHHHHHHHHHHHHHHhhhhhcccCccc-ChhhchhhhhhhhccccHHHHHHHHH
Confidence            22222222222221111   11  1 111111222233333344445555564 45789999999877666666666654


Q ss_pred             HHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          430 GGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       430 ~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                          .+.. ..      ++|+..|++.+++.+++.++.++
T Consensus       403 ----~~~~-~~------~~y~~~f~~~~~~~~i~~~~~~~  431 (476)
T PLN00028        403 ----FFTG-SS------YSTETGISLMGVMIIACTLPVAF  431 (476)
T ss_pred             ----HHhc-CC------ccHhhHHHHHHHHHHHHHHHHHh
Confidence                3321 11      16888999998888888777765

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=1.6e-33  Score=277.84  Aligned_cols=371  Identities=15%  Similarity=0.141  Sum_probs=259.6

Q ss_pred             hHHHHHHHHhccc---ccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhhhhHHHH
Q 011783           62 PFLYFMIKDFQIA---KREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMA  138 (477)
Q Consensus        62 ~~~~~~~~~~~~s---~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l  138 (477)
                      +..|.+.+|+|++   ..+      .+++.+++.++..+++++.|+++||+|||++++++.++.+++.+++++++|++.+
T Consensus       110 ~~~~~i~~e~~l~c~~~~~------~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~  183 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWK------VDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVF  183 (505)
T ss_pred             cccccEEEEecceechHHH------HHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence            5678899999998   666      8999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCcccccccccccccchH
Q 011783          139 VLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFL  217 (477)
Q Consensus       139 ~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  217 (477)
                      ++.|++.|++.+...+. .+++.|++|+++|+++.++...+..+|.+++|.++..+.+    ||+.+....+      ..
T Consensus       184 ~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----wr~~~~~~~i------~~  253 (505)
T TIGR00898       184 LVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD----WRWLQLAVSL------PT  253 (505)
T ss_pred             HHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHH------HH
Confidence            99999999999998877 9999999999999999999999999999999998876643    5554433222      22


Q ss_pred             HHHHHHHHhhccccccCCCCCCccch--hhhhhhhhh----------c--cchhhcccCCchhhhhhcchhhHHHHHHHH
Q 011783          218 PCLCISLFAFGETLHRHNDDDDSCDV--SYDALESAS----------A--EVKEEEGREATPKKSLLKNWPLMSSIIVYC  283 (477)
Q Consensus       218 ~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (477)
                      ....+..+.+||++++...+.+..+.  ..++.....          .  +.++++.+.+...++++++|.++...+...
T Consensus       254 ~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  333 (505)
T TIGR00898       254 FLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLM  333 (505)
T ss_pred             HHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHH
Confidence            23334446788988754322221111  001100000          0  000001112346778899988877665554


Q ss_pred             HHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 011783          284 VFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYP  363 (477)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  363 (477)
                      +..+.........+.+..      ..+.+..   ......++..+++.+ +.+++.||+|||+.+..+.++.+++++.+.
T Consensus       334 ~~~~~~~~~~~~~~~~~~------~~~~~~~---~~~~~~~~~~i~~~~-~~~~l~dr~grr~~~~~~~~~~~~~~l~~~  403 (505)
T TIGR00898       334 MLWFTTAFSYYGLVLDLG------NLGGNIY---LDLFISGLVELPAKL-ITLLLIDRLGRRYTMAASLLLAGVALLLLL  403 (505)
T ss_pred             HHHHHHHHHHHHHhcccc------ccCCChH---HHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            433322222112222221      2444432   233344566666766 888999999999999998888777776665


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccc
Q 011783          364 YIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDA  443 (477)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~  443 (477)
                      +.....   .+ ......++.+++....++..+.+..|.+|++.|+++.|+.+....+|++++|.+.+ +.+ .      
T Consensus       404 ~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~------  471 (505)
T TIGR00898       404 FVPVDL---YF-LRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE-K------  471 (505)
T ss_pred             HcCCCc---hH-HHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-H------
Confidence            543211   11 12222233345556667788889999999999999999999999999999999988 433 3      


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHHHhhhhhhccC
Q 011783          444 SFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRH  476 (477)
Q Consensus       444 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (477)
                          ++..++.+.+++.+++.++.++  +||++
T Consensus       472 ----~~~~~~~~~~~~~~~~~~~~~~--lpet~  498 (505)
T TIGR00898       472 ----WLFLPLVLFGGLALLAGILTLF--LPETK  498 (505)
T ss_pred             ----HHhhHHHHHHHHHHHHHHHHHc--CcCCC
Confidence                3456777777777777666655  66654

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=7.9e-33  Score=269.79  Aligned_cols=403  Identities=14%  Similarity=0.122  Sum_probs=275.9

Q ss_pred             CCchhHHHHHHHHHHHhhhchhchHhHHHHHHH----------------------HhcccccchhhhhhhHHHHHHHHHH
Q 011783           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIK----------------------DFQIAKREEDIGSYAGYVGSSFMFG   94 (477)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~s~~~~~~~~~~g~~~s~~~~~   94 (477)
                      +.++....++++...+++.++..++...+.+.+                      |++.+..+      .|++.+++.++
T Consensus        15 ~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~s~~~~~   88 (465)
T TIGR00894        15 SFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGAL------QGLILSSHFYG   88 (465)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHH------hhHHHHHHHHH
Confidence            444555667777777888888888877777766                      77888888      99999999999


Q ss_pred             HHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhH
Q 011783           95 RALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS--VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALG  171 (477)
Q Consensus        95 ~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~  171 (477)
                      +.+++++.|+++||+|||+++..+.++++++.+++.++  .+++.+++.|+++|++.+...|. ..+++|++|+++|+++
T Consensus        89 ~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~  168 (465)
T TIGR00894        89 QIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRL  168 (465)
T ss_pred             HHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHH
Confidence            99999999999999999999999999999998887554  56889999999999999998888 9999999999999999


Q ss_pred             HHHHHHHhHHHHHHHHhHHHHhhhccccCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhh
Q 011783          172 LSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESA  251 (477)
Q Consensus       172 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  251 (477)
                      +++...+..+|..++|++++.+.+...+||+.|....++     .+...++.....+|.|+..+..+++++   +..++.
T Consensus       169 ~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~-----~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~i~~~  240 (465)
T TIGR00894       169 LGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIV-----GCAWSLLWFVFPADDPSIHPCISKFEK---KYINSS  240 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHH-----HHHHHHHHHHHhcCCcccCCCCCHHHH---HHHHhh
Confidence            999999999999999999999887312444444322211     111112222233344432211111100   111111


Q ss_pred             hccchhhcccCCchhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHH
Q 011783          252 SAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQ  331 (477)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~  331 (477)
                      .+ .++++.+.+..++++++++.++...+..++.......+..+.|.|+.+.     +|++..+.++..+...++..++.
T Consensus       241 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-----~g~s~~~~g~~~~~~~~~~~i~~  314 (465)
T TIGR00894       241 LQ-GQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWV-----LRVSGKENGLLSSLPYLFAWLCS  314 (465)
T ss_pred             cc-cccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCcChHHhHHHHHHHHHHHHHHH
Confidence            01 1111112234578899999999998888888887778888889887654     78999999999999999999998


Q ss_pred             HHHHHHHHHhhcchhHH------HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCc
Q 011783          332 LSLYPFLERILGPIMVA------RIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQ  405 (477)
Q Consensus       332 ~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (477)
                      . +.+++.||.++|+..      .....+.........+.......... ...+...+.+.+.....+.......+..| 
T Consensus       315 ~-~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-  391 (465)
T TIGR00894       315 I-FAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFY-LTIIILTLANAVSSGPLAGVLINSLDLAP-  391 (465)
T ss_pred             H-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH-HHHHHHHHHHHHhhhhhhhhhhchhhcCh-
Confidence            8 899999987543211      01111111111111111111001111 11222222223333334444455556665 


Q ss_pred             chhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          406 DQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       406 ~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      +.+|.+.|+.+..+.+++.++|.+.|.+.+.....       +|..+|.+.+++.+++.++...
T Consensus       392 ~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~-------~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       392 RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKN-------VWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCch-------HHHHHHHHHHHHHHHHHHHeee
Confidence            58999999999999999999999999887643111       4788999988888888776654

>PRK10054 putative transporter; Provisional

Probab=100.00  E-value=2.5e-32  Score=259.48  Aligned_cols=373  Identities=14%  Similarity=0.143  Sum_probs=275.4

Q ss_pred             hHHHHHHHHHHHhhhchhchHhHHH-HHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHH
Q 011783           41 TELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (477)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~  119 (477)
                      |.++.+....++...+.+...+.+| ++.+++|.+..+      +|++.+.+.++..+++++.|+++||+|||+++.++.
T Consensus         7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~   80 (395)
T PRK10054          7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDL------IGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAI   80 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHH
Confidence            4466777788888899899999887 556789999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccc
Q 011783          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (477)
Q Consensus       120 ~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  198 (477)
                      ++..++.++.+++++++.+++.|++.|.+.+...+. .++..|.+|+++|++++++.+...++|..+||.+++++.+  .
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~--~  158 (395)
T PRK10054         81 TAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM--Q  158 (395)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--h
Confidence            999999999999999999999999988877777777 9999999999999999999999999999999999998875  2


Q ss_pred             cCCcccccccccccccchHHH-HHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHH
Q 011783          199 KYPNLFSSESLFGKFPYFLPC-LCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMS  277 (477)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (477)
                      +|+..|...      ...... .+...+.+|+.+++++   ++.+                   ...+.++.+|+|+++.
T Consensus       159 g~~~~f~~~------~~~~~i~~i~~~~~~~~~~~~~~---~~~~-------------------~~~~~~~~~~~~~~~~  210 (395)
T PRK10054        159 SINLPFWLA------AICSAFPLVFIQIWVQRSEKAIA---TETG-------------------SVWSPSVLLQDKALLW  210 (395)
T ss_pred             ccCcHHHHH------HHHHHHHHHHHHHHHhccccccc---cchh-------------------hhhhhhhhccCceehH
Confidence            344333211      111111 1122223443321110   0000                   0012356788898887


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 011783          278 SIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIP  357 (477)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  357 (477)
                      .....++.......+..+.+.|....   .+.+.+....+.......+.....+. ..+++.||.++|+.+..+..+..+
T Consensus       211 ~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~l~~~~~~~~~  286 (395)
T PRK10054        211 FTCSGFLASFVSGAFASCISQYVMVV---ADSDFAEKVVAVVLPVNAAMVVSLQY-SVGRRLNAANIRPLMTAGTLCFVI  286 (395)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHh---cccchHHHHHHHHHHhhhhheeeehh-HHHHHHccCCchhHHHHHHHHHHH
Confidence            77766665555545545556555432   23566777788888887777777766 677888999999988888777766


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHh
Q 011783          358 LLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWA  437 (477)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  437 (477)
                      +...+.....  +.  + .......+.+++.....|.....+.+..|++.++++.+..+ ...+|..+||.++|.++|+.
T Consensus       287 ~~~~~~~~~~--~~--~-~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~  360 (395)
T PRK10054        287 GLVGFIFSGN--SL--L-LWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTL  360 (395)
T ss_pred             HHHHHHHcch--HH--H-HHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHc
Confidence            6655543221  11  1 12223334455666667787888999999999999998755 67799999999999999998


Q ss_pred             hhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          438 QKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       438 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                                |+...|.+.+.+..++.++..+
T Consensus       361 ----------g~~~~~~~~~~~~~~~~~~~~~  382 (395)
T PRK10054        361 ----------PPWSLFVILALAIVAAWLLMLK  382 (395)
T ss_pred             ----------ChhhHHHHHHHHHHHHHHHHHh
Confidence                      7888888887777777776664

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.8e-33  Score=249.99  Aligned_cols=389  Identities=14%  Similarity=0.130  Sum_probs=306.1

Q ss_pred             CCCCchhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchh
Q 011783           35 KSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV  114 (477)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~  114 (477)
                      .++..+|.+++-++...+.+....+.+++.+.+.+|+|+|++|      .+++.++..+...+..++.|.+.||+|.|++
T Consensus         8 ~k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q------~~ll~aiPil~GallRl~~g~l~drfGgR~~   81 (417)
T COG2223           8 GKRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQ------KGLLVAIPILVGALLRLPYGFLTDRFGGRKW   81 (417)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHH------HHHHHHHHHHHhHHHHHHHHhhhcccCchHH
Confidence            3455567888888888888999999999999999999999999      9999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHhhhcccchhhHHHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHH
Q 011783          115 IIMGTASVVIFNTLFGLSVN---FWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG  191 (477)
Q Consensus       115 ~~~~~~~~~i~~~~~~~~~~---~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  191 (477)
                      ...+.++..+-.+..+++.+   ++++++.+++.|++.+.+....+++++++|+|++|.++|++. ..++|..+...++.
T Consensus        82 ~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P  160 (417)
T COG2223          82 TILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAP  160 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHH
Confidence            99999999999999998864   459999999999999999888999999999999999999999 99999999999999


Q ss_pred             HhhhccccCCcccc---ccccccc-ccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhh
Q 011783          192 FLAQPAEKYPNLFS---SESLFGK-FPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  267 (477)
Q Consensus       192 ~l~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (477)
                      .+..       .++   |+.+-.. .+..++..+...+.+-+.+..+...++.                     .+...+
T Consensus       161 ~v~~-------~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~---------------------~~~~~~  212 (417)
T COG2223         161 LVAV-------AFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQ---------------------LPAQLK  212 (417)
T ss_pred             HHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccc---------------------chhHHH
Confidence            8887       444   5544311 1112222333333443333321111110                     013567


Q ss_pred             hhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH
Q 011783          268 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV  347 (477)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  347 (477)
                      .++++++.|.+.+.|+..+....++..++|.|+.+.     ++.++.++|.......+.+.+.+. ++|+++||+|.+|.
T Consensus       213 ~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~-----fg~~~~~Ag~~a~~f~~~g~l~Rp-~GG~LsDR~Gg~rv  286 (417)
T COG2223         213 AVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQ-----FGLSPVTAGLIAFLFPLIGALARP-LGGWLSDRIGGRRV  286 (417)
T ss_pred             HHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChhhHHHHHHHHHHHHHHHHh-ccchhhhhccchhH
Confidence            788999999999999999999999999999999876     999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHh
Q 011783          348 ARIAGVLTIPLLTSYPYIAMLSG-FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAG  426 (477)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~  426 (477)
                      +...+..+.++.....+...... ...........+...++.+.-....+.++..++| ++.|.+.|+...++.+|++.-
T Consensus       287 ~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~l  365 (417)
T COG2223         287 TLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFL  365 (417)
T ss_pred             HHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccch
Confidence            98888888887776665542221 0111122222222233344444455556666665 579999999999999999999


Q ss_pred             hhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhhhhhhc
Q 011783          427 PAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQ  474 (477)
Q Consensus       427 ~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (477)
                      |...|..++.++         .++..|++...+.+++.+.....+.|+
T Consensus       366 p~~~g~~~~~tg---------~~~~~f~~~~~~~~~a~v~~~~~y~r~  404 (417)
T COG2223         366 PLAFGVSLDLTG---------SYTGAFMLLLAFYLVALVLTWALYARR  404 (417)
T ss_pred             hHHHHHHHHhcc---------cHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999882         377899999999888888776644443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=100.00  E-value=1.2e-31  Score=256.17  Aligned_cols=374  Identities=15%  Similarity=0.144  Sum_probs=258.0

Q ss_pred             HHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHH
Q 011783           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (477)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i  124 (477)
                      .+.+..+...++..++.|.+|.+.+++|.+..+      .++..+++.+++.++++++|+++||+|||++++.+.+++++
T Consensus        20 ~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~------~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~   93 (413)
T PRK15403         20 ALILYDFAAYLTTDLIQPGIINVVRDFNADVSL------APASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTL   93 (413)
T ss_pred             HHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHH
Confidence            345556667778889999999999999999999      99999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCcc
Q 011783          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (477)
Q Consensus       125 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~  203 (477)
                      +.+++++++|++.++++|+++|++.+...+. .+++.|++|+++|++++++......+|..+||.+++.+.+       .
T Consensus        94 ~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~-------~  166 (413)
T PRK15403         94 ACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMH-------F  166 (413)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------h
Confidence            9999999999999999999999998776666 8889999999999999999999999999999999999887       3


Q ss_pred             cccccccccccch-HHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHHHH
Q 011783          204 FSSESLFGKFPYF-LPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVY  282 (477)
Q Consensus       204 ~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (477)
                      ++||..|...... .+..+...+.+||+++.+++   +.+                ..+..+..++++|||.++...+..
T Consensus       167 ~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~---~~~----------------~~~~~~~~~~ll~~~~~~~~~l~~  227 (413)
T PRK15403        167 VHWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAV---PFS----------------AKSVLRDFRNVFRNRLFLTGAATL  227 (413)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhCCCCccccCC---CCC----------------hHHHHHHHHHHHcCHHHHHHHHHH
Confidence            4555554211111 11222223345665331110   000                001123567888999999888777


Q ss_pred             HHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 011783          283 CVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSY  362 (477)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  362 (477)
                      .+.......+....|.++.+.     +|+++.+.++.......+.+++..+...++.|+.++| .......+..++..++
T Consensus       228 ~~~~~~~~~~~~~~P~~l~~~-----~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~~~~~~~ig~~l~  301 (413)
T PRK15403        228 SLSYIPMMSWVAVSPVILIDA-----GGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPR-FIWRAVPIQLVGLALL  301 (413)
T ss_pred             HHHHHHHHHHHHhChHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchh-HHHHHHHHHHHHHHHH
Confidence            776666666666777776654     7899999999888777888887773444444544433 3322222223332222


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcc
Q 011783          363 PYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLD  442 (477)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~  442 (477)
                      ........ ..+........+.+.+.+...|......-. -....+|++.++.+.....+..+++.+.|++.++.     
T Consensus       302 ~~~~~~~~-~~~~~~~~~~~l~~~G~~~~~p~~~~~al~-~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~-----  374 (413)
T PRK15403        302 IVGNLLWP-HVWLWSVLGTSLYAFGIGLIFPTLFRFTLF-SNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNG-----  374 (413)
T ss_pred             HHHHHHcc-ccHHHHHHHHHHHHHHHHHHhHHHHHHHhc-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----
Confidence            22110001 112112233333345555566665543222 22335799999999999999999999999887763     


Q ss_pred             ccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          443 ASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       443 ~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                            -...|...++++.+.....+.
T Consensus       375 ------~~~~~~~~~~~~~~~~~~~~~  395 (413)
T PRK15403        375 ------GRLPFHLLAVVAGVIVVFTLA  395 (413)
T ss_pred             ------CchHHHHHHHHHHHHHHHHHH
Confidence                  334555555554444444333

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=100.00  E-value=1e-32  Score=259.90  Aligned_cols=347  Identities=24%  Similarity=0.340  Sum_probs=259.2

Q ss_pred             HHHHHHHhhhchhchHhHHH-HHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHH
Q 011783           46 IWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (477)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i  124 (477)
                      +++..++..++.....+.+| .+.+++|.+..+      .+++.+++.++..+++++.|+++||+|||+++..+.++.++
T Consensus         1 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~   74 (352)
T PF07690_consen    1 LFLAFFLSGFGFSIISPALPLYLAEELGLSPSQ------IGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFAL   74 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHC------HHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhh
Confidence            35677888888899999999 899999999999      99999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCcc
Q 011783          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (477)
Q Consensus       125 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~  203 (477)
                      +.++..+++|++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+....+|..++|.+++.+.+       .
T Consensus        75 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~-------~  147 (352)
T PF07690_consen   75 GSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS-------Y  147 (352)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------H
T ss_pred             HHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh-------c
Confidence            9776667788889999999999999998888 9999999999999999999999999999999999999986       4


Q ss_pred             cccccccccccchHHHH-HHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCc-hhhhhhcchhhHHHHHH
Q 011783          204 FSSESLFGKFPYFLPCL-CISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT-PKKSLLKNWPLMSSIIV  281 (477)
Q Consensus       204 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  281 (477)
                      ++|+..+.......... ++....+++.+++++.++++++.             ++++++.. ..+.+.+++.+|.....
T Consensus       148 ~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (352)
T PF07690_consen  148 FGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE-------------SKKPKPLKPGFKSLFKNPVLWILLIA  214 (352)
T ss_dssp             CHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT---------------HHHCCCH-CTHHHHHHCCHHHHHH
T ss_pred             cccccccccccchhhhhhhhHhhhhhhcccccccccccccc-------------cccccccccccccccccchhhhhhhh
Confidence            45555541111111111 11112333333322222111110             00111122 36777777877755555


Q ss_pred             HHHHHhhhhhhHHHHHHhhcCcccCCccccc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 011783          282 YCVFSLHDMAYSEIFSLWANSPKKLGGLNYS-TQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLT  360 (477)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  360 (477)
                      .++..+.......+.|.|+.+.     +|++ ..+.+.......+...++.. +.+++.||+++++..........+...
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~  288 (352)
T PF07690_consen  215 FFLFFFVFSGFSFFLPLYLQEV-----LGFSGPSQAGLLFSIFGIVGIIGSL-LAGRLSDRFGRRRRLLIAILLLILGAL  288 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHH-----HHCCTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHhhcccchhhhhc-----cCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence            5555555566777788775544     7888 78999999999999999988 889999999988777777766666665


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhh
Q 011783          361 SYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGP  427 (477)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~  427 (477)
                      .+.......+.   ........+.+++.+...+....+..+.+|++++|++.|+.+...+++..++|
T Consensus       289 ~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  289 GLLLLPFSSSP---VWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHCCSHHHCHH---HHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            55544443111   12222334456677778899999999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=100.00  E-value=2.3e-31  Score=252.44  Aligned_cols=365  Identities=14%  Similarity=0.112  Sum_probs=274.5

Q ss_pred             HHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHH-HHH
Q 011783           44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT-ASV  122 (477)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~-~~~  122 (477)
                      ..+.+..+..++..++..|.+|.+.+|+|.+..+      +|++.+++.+...++++++|+++||+|||+...... ...
T Consensus         7 ~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~------ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~   80 (382)
T TIGR00902         7 RWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEM------IGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALAS   80 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            4466777888888899999999999999999999      999999999999999999999999999854332221 111


Q ss_pred             HHHH-HHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccC
Q 011783          123 VIFN-TLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (477)
Q Consensus       123 ~i~~-~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~  200 (477)
                      .+.. ..+..+++++.+++.|+++|.+.+...|. .++..|+  +++|++++|......++|.+++|++++.+.+     
T Consensus        81 ~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~-----  153 (382)
T TIGR00902        81 AIFAAAFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIG-----  153 (382)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            1222 24446789999999999999987777777 7776554  5789999999999999999999999999998     


Q ss_pred             CcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHH
Q 011783          201 PNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSII  280 (477)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (477)
                        .++|+..|.... ......+..+.+++.+++++  +++.+                +.+.....++++|+|+++...+
T Consensus       154 --~~g~~~~f~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~----------------~~~~~~~~~~~l~~~~~~~~l~  212 (382)
T TIGR00902       154 --MFDEQNILAILT-AGLAFMLIGFLIKPTIPPKD--AIPED----------------ESQGDSAFIALLKNPMNLRFLA  212 (382)
T ss_pred             --HcChhHHHHHHH-HHHHHHHHHHHcCCCCCCCc--ccccc----------------ccccchhHHHHHcChHHHHHHH
Confidence              556666552111 11111122222222211110  00000                1111234678899999999888


Q ss_pred             HHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 011783          281 VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLT  360 (477)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  360 (477)
                      ..++.......+..+.+.|.++      .|.++.+.|.+.....+..++... +.+++.||+++|+.+..+.+...+...
T Consensus       213 ~~~l~~~~~~~~~~~~~~~l~~------~g~s~~~~g~l~~~~~~~~i~~~~-~~~~l~~r~g~~~~l~~~~~~~~~~~~  285 (382)
T TIGR00902       213 AVCLIQGAHAAYYGFSAIYWQA------AGISASATGLLWGIGVLAEIIIFA-FSNKLFQNCSARDLLLISAIACVGRWA  285 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH------CCCCHhHHHHHHHHHHHHHHHHHH-HhHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence            8888887888888888887764      799999999999988888888877 889999999999999999988888877


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHH-HHHHHHHHhhhHHHHHHHHhhh
Q 011783          361 SYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMT-GMSLFKAAGPAGGGALFSWAQK  439 (477)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~~g~~~~~~~~g~l~~~~~~  439 (477)
                      .+.+.++      ...+.....+.++..+...+....++++. |++++++.+++++. ...+|..++|.++|+++|+.  
T Consensus       286 ~~~~~~~------~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~--  356 (382)
T TIGR00902       286 IIGAIEA------FPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL--  356 (382)
T ss_pred             HHHhHhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            7655443      12344456777788888888888899987 99999999999875 56899999999999999998  


Q ss_pred             hccccCCCCchHHHHHHHHHHHHHHHHH
Q 011783          440 RLDASFLPGSQMVFFVLNVVEAIGVLMT  467 (477)
Q Consensus       440 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~  467 (477)
                              |+ ..|...+++.+++.++.
T Consensus       357 --------g~-~~~~~~~~~~~~~~~~~  375 (382)
T TIGR00902       357 --------GA-GTFVFMAIIAAAAFFLI  375 (382)
T ss_pred             --------cH-HHHHHHHHHHHHHHHHH
Confidence                    54 56777887777665543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.3e-31  Score=248.55  Aligned_cols=389  Identities=20%  Similarity=0.205  Sum_probs=282.7

Q ss_pred             HHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHh---hhhHHHHHHHHHH
Q 011783           68 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL---SVNFWMAVLTRFL  144 (477)
Q Consensus        68 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~---~~~~~~l~~~r~l  144 (477)
                      .+++|.+.++++.....+.+.+++.+|.++|++..|+++||+|||..+.++.++..++.++..+   .+++..++++|++
T Consensus        46 ~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i  125 (485)
T KOG0569|consen   46 IERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLI  125 (485)
T ss_pred             HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            3556666666667777899999999999999999999999999999999999888888777765   4689999999999


Q ss_pred             hhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHH-HhhhccccCCcccccccccccccchHHHHHH
Q 011783          145 LGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG-FLAQPAEKYPNLFSSESLFGKFPYFLPCLCI  222 (477)
Q Consensus       145 ~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (477)
                      .|+..|..... .-++.|..|++.||..-.+.+.+..+|.++|..++. .+......|++.+....+      .....++
T Consensus       126 ~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i------~~~~~l~  199 (485)
T KOG0569|consen  126 VGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLI------PALLQLA  199 (485)
T ss_pred             HHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHH------HHHHHHH
Confidence            99999998777 999999999999999999999999999999976663 344434456555443222      2455566


Q ss_pred             HHHhhccccccCCC-CCCccch--hhhhhhhh----------hccchhh--cccCCchhhhhhcchhhHHHHHHHHHHH-
Q 011783          223 SLFAFGETLHRHND-DDDSCDV--SYDALESA----------SAEVKEE--EGREATPKKSLLKNWPLMSSIIVYCVFS-  286 (477)
Q Consensus       223 ~~~~l~~~~~~~~~-~~~~~~~--~~~~~~~~----------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  286 (477)
                      .+.++||+|++.-. ++++.+.  ..+..+..          .++.+++  .++...+.+++++++..+......+... 
T Consensus       200 ~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~  279 (485)
T KOG0569|consen  200 LLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSF  279 (485)
T ss_pred             HHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHH
Confidence            77889999997443 2222221  11111111          1111111  1125567889999987776543333322 


Q ss_pred             hhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Q 011783          287 LHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA  366 (477)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (477)
                      ..++..  ..+.+.+......+.|++..++-+.....++...+..+ ++.++.||.|||+++..+..++.+..+.+....
T Consensus       280 ~qq~sG--i~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~-~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~  356 (485)
T KOG0569|consen  280 AQQFSG--INAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTL-VSPFLIDRLGRRPLLLISLSLMAVALLLMSIAL  356 (485)
T ss_pred             HHHhcC--cceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            222222  22222222223444799999999999999999999998 999999999999999999988888766555443


Q ss_pred             Hhhhhh-H---HHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcc
Q 011783          367 MLSGFG-L---AFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLD  442 (477)
Q Consensus       367 ~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~  442 (477)
                      ...... .   +..+.........+..+..|..+-+.+|++|++.|+.++++...+..+..++-......+.+..     
T Consensus       357 ~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~-----  431 (485)
T KOG0569|consen  357 FLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVI-----  431 (485)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence            332222 1   2233444444556677788999999999999999999999999999999999999999998887     


Q ss_pred             ccCCCCchHHHHHHHHHHHHHHHHHhhhhhhccCC
Q 011783          443 ASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRHD  477 (477)
Q Consensus       443 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (477)
                           |. ..|+.+.+.+++..+..++ ++||+|+
T Consensus       432 -----g~-~~filF~i~~~~~~i~~~~-~lPETkg  459 (485)
T KOG0569|consen  432 -----GP-YVFILFVIPLAIFLIYLYR-YLPETKG  459 (485)
T ss_pred             -----cc-hhhHHHHHHHHHHHHHHHH-hCcccCC
Confidence                 44 5777777777777776665 7999874

>PRK11043 putative transporter; Provisional

Probab=100.00  E-value=6.6e-31  Score=251.61  Aligned_cols=349  Identities=17%  Similarity=0.148  Sum_probs=254.2

Q ss_pred             HHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHH
Q 011783           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (477)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~  122 (477)
                      +....+...+..+..+++.|.+|.+.+++|.++++      .+++.+++.++..++++++|+++||+|||+++..+.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   81 (401)
T PRK11043          8 LVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASA------VSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLF   81 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHH------HHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHH
Confidence            44455556667778888899999999999999999      999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCC
Q 011783          123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (477)
Q Consensus       123 ~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~  201 (477)
                      .++.+++.++++++.+++.|+++|++.+...+. .+++.|++|++++++..+.......+|..++|.+++.+.+      
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~------  155 (401)
T PRK11043         82 ALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN------  155 (401)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence            999999999999999999999999998877777 8899999999999999999999999999999999999987      


Q ss_pred             cccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHHH
Q 011783          202 NLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIV  281 (477)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (477)
                       .++|+..+...........+..+.++|.++.   +++                    ++.+...++++|++.++...+.
T Consensus       156 -~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--------------------~~~~~~~~~~~~~~~~~~~~~~  211 (401)
T PRK11043        156 -HFGWQAIFATLFAITLLLILPTLRLKPSKKA---RKQ--------------------SQDALTFKQLLKSKTYLGNVLI  211 (401)
T ss_pred             -cCChHHHHHHHHHHHHHHHHHHHHcCCCCCc---ccc--------------------chHHHHHHHHHcChhHHHHHHH
Confidence             4556555421111111111222223322110   000                    0011246677888887765555


Q ss_pred             HHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 011783          282 YCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTS  361 (477)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  361 (477)
                      ..+.......+..+.|.+..+      +|+++.+.++......++.++++. ..+++.||+++++..........++...
T Consensus       212 ~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~g~~~~~~~~~~~~g~~-~~~~l~~r~~~~~~~~~~~~~~~~~~~~  284 (401)
T PRK11043        212 FAACSAAFFAWLTGSPFILEQ------MGYSPADIGLSYVPQTIAFLVGGY-GCRAALQKWGGEQLLPWLLVLFAVSVIA  284 (401)
T ss_pred             HHHHHHHHHHHHHHhHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            554444444555566665543      688999999888888888888887 8889999999888776665555444333


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHH
Q 011783          362 YPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSW  436 (477)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  436 (477)
                      +...........+ .......+.++..+..++.......+..| +++|++.|+.+.....++..++.+.|.+.+.
T Consensus       285 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~  357 (401)
T PRK11043        285 IWLASLLSHPSLV-PLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST  357 (401)
T ss_pred             HHHHHHhccCcHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            2222211111111 22223333455666777777777666666 6799999999999999999999999988764

>TIGR00895 2A0115 benzoate transport

Probab=100.00  E-value=1.4e-31  Score=256.45  Aligned_cols=369  Identities=19%  Similarity=0.208  Sum_probs=256.1

Q ss_pred             chhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHH
Q 011783           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (477)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~  118 (477)
                      .++.+....+..+...++.....+..|.+.+++|.+..+      .+++.+.+.++..+++++.|+++||+|||+.+..+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~   88 (398)
T TIGR00895        15 QWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQ------LGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWS   88 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHH------HHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHH
Confidence            344555666677777778888888999999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhcc
Q 011783          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (477)
Q Consensus       119 ~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  197 (477)
                      .++.+++.++..++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|..+++.+++.+.+  
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--  166 (398)
T TIGR00895        89 ILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP--  166 (398)
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh--
Confidence            9999999999999999999999999999999888887 9999999999999999999999999999999999999987  


Q ss_pred             ccCCccccccccccccc-chHHHHHHHHHhhccccccCCCCCCcc-chhhhhhhhhhc-----cchh--hccc-CCchhh
Q 011783          198 EKYPNLFSSESLFGKFP-YFLPCLCISLFAFGETLHRHNDDDDSC-DVSYDALESASA-----EVKE--EEGR-EATPKK  267 (477)
Q Consensus       198 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~--~~~~-~~~~~~  267 (477)
                           .++|+..+.... ......+.....+||+++...+++++. ++..++......     +..+  ++.+ .+...+
T Consensus       167 -----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (398)
T TIGR00895       167 -----VFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFK  241 (398)
T ss_pred             -----cccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHH
Confidence                 344554442111 122333344455666654322111110 000000000000     0000  0001 111122


Q ss_pred             hhhcch---hhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011783          268 SLLKNW---PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP  344 (477)
Q Consensus       268 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  344 (477)
                      .+++++   ..+......++..........+.|.+..      ++|+++.+.+.......++.+++.+ +.+++.||+++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~  314 (398)
T TIGR00895       242 ALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMV------ELGFSLSLAATGGALFNFGGVIGSI-IFGWLADRLGP  314 (398)
T ss_pred             HHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcch
Confidence            233332   2222233333333333444445553332      2788999999999999999999988 89999999998


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHH
Q 011783          345 IMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKA  424 (477)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~  424 (477)
                      |+.... ..+..+....+.....  +.  + ......++.+++.+...+...++..+.+|++.|+++.|+.+....+|.+
T Consensus       315 ~~~~~~-~~~~~~~~~~~~~~~~--~~--~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~  388 (398)
T TIGR00895       315 RVTALL-LLLGAVFAVLVGSTLF--SP--T-LLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAI  388 (398)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHhh--CH--H-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            844433 3333333222222111  11  1 2233334456677778888899999999999999999999999999999


Q ss_pred             HhhhHHHHH
Q 011783          425 AGPAGGGAL  433 (477)
Q Consensus       425 ~~~~~~g~l  433 (477)
                      ++|.+.|.+
T Consensus       389 ~g~~~~G~l  397 (398)
T TIGR00895       389 IGPILAGYL  397 (398)
T ss_pred             HHHHhHHhc
Confidence            999999875

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=100.00  E-value=1.3e-30  Score=251.30  Aligned_cols=386  Identities=20%  Similarity=0.205  Sum_probs=296.0

Q ss_pred             CCchhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhH
Q 011783           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (477)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~  116 (477)
                      +.+.+.+..++.+.+++.++..+....++.+..+..-|+..      ++++.++..+...+.++++|.++||++|||+++
T Consensus         6 plr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~------valv~~a~~LP~~Llsl~aG~laDr~drrrili   79 (524)
T PF05977_consen    6 PLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLM------VALVQAASTLPILLLSLFAGALADRFDRRRILI   79 (524)
T ss_pred             cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence            34556788899999999999999999999888888888888      999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh-----hhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHH
Q 011783          117 MGTASVVIFNTLFGLS-----VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (477)
Q Consensus       117 ~~~~~~~i~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  190 (477)
                      .+.++.++..+..++.     .+.+.+++.-++.|++.+...|+ .+++.|.+|+++..+++++.+...++..++||.++
T Consensus        80 ~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalg  159 (524)
T PF05977_consen   80 LSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALG  159 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHH
Confidence            9998877665544432     37889999999999999999999 99999999999999999999999999999999999


Q ss_pred             HHhhhccccCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhh
Q 011783          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLL  270 (477)
Q Consensus       191 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (477)
                      |.+..       .+|....|..-.......+..+...+   ...++++.+.+..              .++.+...+.+.
T Consensus       160 G~Lva-------~~G~~~~f~inalsfl~~i~~l~~~~---~~~~~~~~~~e~~--------------~~~l~~G~ryv~  215 (524)
T PF05977_consen  160 GILVA-------FFGAAAAFLINALSFLISILALLRWK---PPPPPSSLPRERF--------------FSALREGLRYVR  215 (524)
T ss_pred             HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHcc---ccccccccchhhh--------------hhhHHHHHHHHh
Confidence            99987       45544444111111111111111111   1111111111111              122234566667


Q ss_pred             cchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 011783          271 KNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI  350 (477)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  350 (477)
                      ++|.+...+...++++.....+...+|.+..+.     +|.++...|++.+..+++.+++++ +.+++.+|.++++.+..
T Consensus       216 ~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~-----l~~~a~~yGll~a~~gvGai~Gal-~~~~l~~~~~~~~lv~~  289 (524)
T PF05977_consen  216 SSPPLRSVLLRSFLFNLFASAVWALLPLFARDV-----LGGGASGYGLLLAAFGVGAILGAL-LLPRLRRRLSSRRLVLL  289 (524)
T ss_pred             cchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHH-----hCCcHHHHHHHHHHHHHHHHHHHH-HHHHhhcccCcchhhHH
Confidence            778777666666666665566666777776654     788999999999999999999999 88899999998888888


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHH
Q 011783          351 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGG  430 (477)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~  430 (477)
                      +.+..+++++.+.+..+.     + ...+..++.|++.........+..++.+|++.||++++++.+....+..+|..+.
T Consensus       290 ~~~~~a~~~~~lal~~~~-----~-~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~  363 (524)
T PF05977_consen  290 ASLLFALALLLLALSPSF-----W-LALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLW  363 (524)
T ss_pred             HHHHHHHHHHHHhcchHH-----H-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            887777777666665432     1 3334445556777777788888999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhhhhhhc
Q 011783          431 GALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQ  474 (477)
Q Consensus       431 g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (477)
                      |.+.+..          |.+..+.+.++..+++.++.....+++
T Consensus       364 G~la~~~----------g~~~al~~a~~~lll~~~~~~~~~l~~  397 (524)
T PF05977_consen  364 GFLADHF----------GVRTALLIAGAALLLSALIALRFPLRQ  397 (524)
T ss_pred             HHHHHHh----------CHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            9999998          777888888877777776665544444

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.7e-32  Score=246.68  Aligned_cols=377  Identities=17%  Similarity=0.099  Sum_probs=263.2

Q ss_pred             CCCCchhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchh
Q 011783           35 KSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV  114 (477)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~  114 (477)
                      ..+.+++.+.++++.++++.++.+.+....+.+++.||.+++.      .|++.+.+.+.+.+++|++|+++|||+||++
T Consensus        27 ~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~------~Gll~~vf~v~~~i~sPl~gyLadryNR~~v  100 (493)
T KOG1330|consen   27 SMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSE------LGLLQTVFIVVFMIASPLFGYLADRYNRKRV  100 (493)
T ss_pred             ccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchh------ccchhHHHHHHHHHHHHHHHHHHhhcCcceE
Confidence            3456677788999999999999999999999999999999999      9999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHh
Q 011783          115 IIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (477)
Q Consensus       115 ~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  193 (477)
                      +.+|..++.++.++++++..||+++++|.+.|+|.+.+.|+ +++++|.+|.++|++++++++.+..+|..+|.+.+..+
T Consensus       101 ~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~v  180 (493)
T KOG1330|consen  101 IAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVV  180 (493)
T ss_pred             EeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeee
Confidence            99999999999999999999999999999999999999998 99999999999999999999999999999999999999


Q ss_pred             hhccccCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcch
Q 011783          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNW  273 (477)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (477)
                      ......|||.|...++.     .+++.++..++.+|..+..+++.+...+.           ........++.+.+.|++
T Consensus       181 a~~~~~Wr~af~~~avl-----~vi~~~L~~~f~~eP~rga~~~~~~~~~~-----------~~~~ts~~kDl~~l~~~~  244 (493)
T KOG1330|consen  181 ASLTFWWRWAFRGSAVL-----GVIVGLLVFLFVREPERGARDEVDGENKM-----------VKPFTSVWKDLKVLAKIK  244 (493)
T ss_pred             ccCccceEEEEEeehHH-----HHHHHHHHHhhccCcccccccccccCCcC-----------CCCccchHHHHHHHHccC
Confidence            88654455554433322     34444455555555543221111110000           000222334556666777


Q ss_pred             hhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc----chhHHH
Q 011783          274 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG----PIMVAR  349 (477)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~  349 (477)
                      .+....+.+....+....+.-+.|.+.+..+..  .|.+..+.-++..+...++.+|.+ +++.++||+.    +.....
T Consensus       245 v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~--~~~~~~~~~ifg~vt~~~G~lGvl-~Ggiisd~~~~~~~~~~~~~  321 (493)
T KOG1330|consen  245 VFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYEL--IGFDHNATLIFGGVTCAGGSLGVL-FGGIISDKLSRIFPNSGTLR  321 (493)
T ss_pred             ceeeehHHHHHHHHhccccchhhhhHHHHHHHH--hCCccccchhhhhHHHhhchhhhe-ehHHHHHHHHHhcccccchh
Confidence            777777777777666666666666665543332  345555556666666677777766 7888888743    212222


Q ss_pred             HHHHHHHHH-------HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHH-HH
Q 011783          350 IAGVLTIPL-------LTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGM-SL  421 (477)
Q Consensus       350 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~  421 (477)
                      ...+.+..+       +.+.+.... ......+.++....   ...........-+..+.+|++.|.++.++...+. .+
T Consensus       322 ~~q~~~~~g~~~s~~~L~~~~~~~~-~s~~~~~il~~~g~---~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~f  397 (493)
T KOG1330|consen  322 ASQLSAALGAPLSIPFLFLFPAFTS-SSMIFGLILFLVGE---TISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIF  397 (493)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHhhhh-HHHHHHHHHHHHHH---HHHhcccccccceeeEecCcccccHHHHHHHHHHHHh
Confidence            222222211       111111111 11111111111111   1112222333446678899999999999998876 45


Q ss_pred             HHHHhhhHHHHHHHHhhhh
Q 011783          422 FKAAGPAGGGALFSWAQKR  440 (477)
Q Consensus       422 g~~~~~~~~g~l~~~~~~~  440 (477)
                      |.+-+|++.|.+.|+...+
T Consensus       398 gd~~~p~ivGilsd~l~g~  416 (493)
T KOG1330|consen  398 GDAASPYIVGILSDKLRGY  416 (493)
T ss_pred             ccCCCcceehhHHHHhhCC
Confidence            5566677999999987444

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=100.00  E-value=8.9e-31  Score=246.55  Aligned_cols=346  Identities=25%  Similarity=0.350  Sum_probs=284.5

Q ss_pred             HHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHH
Q 011783           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (477)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i  124 (477)
                      .+....+...++.....+..|.+.+++|.+..+      .+++.+.+.++..+++++.|+++||+|||+.+..+.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~   76 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQ------AGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFAL   76 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHH
Confidence            455677788888899999999999999999999      99999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCcc
Q 011783          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (477)
Q Consensus       125 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~  203 (477)
                      +.+...+.++++.+++.|++.|++.+...+. .+++.|++|+|+|++.+++.+....+|..++|.+++.+.+       .
T Consensus        77 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-------~  149 (352)
T cd06174          77 GSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE-------S  149 (352)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence            9999999999999999999999999998887 9999999999999999999999999999999999999987       3


Q ss_pred             cccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHHHHH
Q 011783          204 FSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYC  283 (477)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (477)
                      .+|+..+................++                                            |.++...+..+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~  185 (352)
T cd06174         150 LGWRWLFLILAILGLLLALLLLFLL--------------------------------------------RLLLLLALAFF  185 (352)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------------HHHHHHHHHHH
Confidence            3444444111111111111111121                                            44555666666


Q ss_pred             HHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchh-HHHHHHHHHHHHHHHH
Q 011783          284 VFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM-VARIAGVLTIPLLTSY  362 (477)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~  362 (477)
                      +.......+..+.+.+..+.     .|.+..+.+.......++..++.. +.+++.||+++|+ .+..+..+..++....
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  259 (352)
T cd06174         186 LLSFGYYGLLTYLPLYLQEV-----LGLSAAEAGLLLSLFGLGGILGAL-LGGLLSDRLGRRRLLLLIGLLLAALGLLLL  259 (352)
T ss_pred             HHHhHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            66666677777777776643     588999999999999999999988 8899999999999 8888888877777766


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcc
Q 011783          363 PYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLD  442 (477)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~  442 (477)
                      ....+      .........+.+++.+...+....+..|..|+++|++.+|+.+....++..++|.+.|.+.+..     
T Consensus       260 ~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~-----  328 (352)
T cd06174         260 ALAPS------LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG-----  328 (352)
T ss_pred             HHhcc------HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----
Confidence            55432      2234444555567778888999999999999999999999999999999999999999999866     


Q ss_pred             ccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          443 ASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       443 ~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                           +++..+.+.+++.+++.+....
T Consensus       329 -----~~~~~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         329 -----GYGGVFLILAALALLAALLLLL  350 (352)
T ss_pred             -----CcchHHHHHHHHHHHHHHHhee
Confidence                 8889999999988888776543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=100.00  E-value=1.2e-30  Score=249.08  Aligned_cols=353  Identities=12%  Similarity=0.099  Sum_probs=251.5

Q ss_pred             CchhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHH
Q 011783           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (477)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~  117 (477)
                      +++|.+.+.....++..+......|.+|.+.+++|.++.+      .+++.+++.+++.++++++|+++||+|||+++..
T Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~   78 (394)
T PRK11652          5 RNVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGA------VQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILV   78 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHH
Confidence            4566677777777777888888899999999999999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhc
Q 011783          118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (477)
Q Consensus       118 ~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  196 (477)
                      +.++..++.+++.++++++.+++.|++.|++.+...+. ..+..|.+++++|+++.+..+.+..++..++|.+++.+.+ 
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~-  157 (394)
T PRK11652         79 GMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT-  157 (394)
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            99999999999999999999999999999998887777 8889999999999999999999999999999999999887 


Q ss_pred             cccCCcccccccccccccc-hHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhh
Q 011783          197 AEKYPNLFSSESLFGKFPY-FLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPL  275 (477)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (477)
                            ..+|+..+..... .....+......||+++.+++   +                   ++.....++.+|+|.+
T Consensus       158 ------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------------------~~~~~~~~~~~~~~~~  209 (394)
T PRK11652        158 ------LFGWRACYLFLLLLGAGVTFSMARWMPETRPADAR---R-------------------TRVLASYRTLLSNRRF  209 (394)
T ss_pred             ------ccChHHHHHHHHHHHHHHHHHHHHhCCccCccccc---h-------------------hHHHHHHHHHHcChHH
Confidence                  3445544411111 111112222334443221100   0                   0012345667788887


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 011783          276 MSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLT  355 (477)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  355 (477)
                      +...+..+........+....+.+..+.     +|+++.+.++......++.++++. +.+++.||.+++...  .....
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~g~~-~~~~l~~~~~~~~~~--~~~~~  281 (394)
T PRK11652        210 NCYLLMLIGTLAGIAVFEACSGVLMGAV-----LGLSSMTVSILFILPIPAAFFGAW-FAGRPNKRFSTLMWQ--SVICC  281 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhChHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH--HHHHH
Confidence            7655554444433334444444444433     788899999988888888888877 788888888732222  22222


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHH
Q 011783          356 IPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFS  435 (477)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  435 (477)
                      .+....+...........+ .......+.+++.+...|...++..+..| +++|++.++.+....+|..+++.++|.+.+
T Consensus       282 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~  359 (394)
T PRK11652        282 LLAGLLMWIPGWFGVMNVW-TLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ  359 (394)
T ss_pred             HHHHHHHHHHHHhccccHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            2222221111110011112 22333344456667778888888888777 678999999999999999999998887754

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=100.00  E-value=4e-30  Score=245.43  Aligned_cols=344  Identities=19%  Similarity=0.177  Sum_probs=240.6

Q ss_pred             HHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHH
Q 011783           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (477)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~  122 (477)
                      +.......+....+.....+.+|.+.+++|.+..+      .++..+.+.++..+++++.|+++||+|||+++..+.++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~   78 (392)
T PRK10473          5 LLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQ------LHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALF   78 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHH
Confidence            44556666777777788889999999999999999      999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCC
Q 011783          123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (477)
Q Consensus       123 ~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~  201 (477)
                      .++.+++..+++++.+++.|+++|++.+...+. .+++.|++|+++|++++++.+....+|..++|.+++.+.+      
T Consensus        79 ~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~------  152 (392)
T PRK10473         79 IIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIML------  152 (392)
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence            999999999999999999999999998887776 9999999999999999999999999999999999988876      


Q ss_pred             ccccccccccccc-chHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHH
Q 011783          202 NLFSSESLFGKFP-YFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSII  280 (477)
Q Consensus       202 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (477)
                       .++|+..+.... ......+.....++|+++.++   ++ +                 .+..+..++.++++.++...+
T Consensus       153 -~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~-~-----------------~~~~~~~~~~~~~~~~~~~~~  210 (392)
T PRK10473        153 -KFPWQSLFYTMAAMGILVLLLSLFILKETRPARA---PA-A-----------------SSKPRENSESLLNRFFLSRLV  210 (392)
T ss_pred             -CcChHHHHHHHHHHHHHHHHHHHHHcCCCCCccc---CC-c-----------------cchHHHHHHHHhCHHHHHHHH
Confidence             334544431111 111222223344455432210   00 0                 001123345677777665554


Q ss_pred             HHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 011783          281 VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLT  360 (477)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  360 (477)
                      ...+.......+..+.|.+..+     ++|+++.+.+......+++.+++.. +.+++.||+++|+.+..+..+..++..
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~i~~~~-~~~~l~~r~g~~~~~~~~~~~~~~~~~  284 (392)
T PRK10473        211 ITTLSVTVILTFVNTSPVLLME-----QMGFSRGEYAIIMALTAGVSMTVSF-STPFALGIFKPRTLMLTSQVLFLAAGI  284 (392)
T ss_pred             HHHHHHHHHHHHHHhCHHHHHH-----HcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            4443333333344444544433     2788999999999999999999988 889999999999998888877776666


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHh
Q 011783          361 SYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWA  437 (477)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  437 (477)
                      .+.......    .........  ..+.+...+.  ....+..|.++|+   |.......++..+++.+.+++.++.
T Consensus       285 ~~~~~~~~~----~~~~~~~l~--~~g~~~~~~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~  350 (392)
T PRK10473        285 TLALSPSHA----VSLFGITLI--CAGFSVGFGV--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVL  350 (392)
T ss_pred             HHHHHHHHH----HHHHHHHHH--HHHHHHHhHH--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            555443211    111111111  1111122222  2223344544443   4445556778888888888888877

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=100.00  E-value=1.6e-30  Score=247.14  Aligned_cols=335  Identities=19%  Similarity=0.219  Sum_probs=234.2

Q ss_pred             hchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhhhh
Q 011783           55 LPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN  134 (477)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~  134 (477)
                      ++..++.|.+|.+.+++|.++.+      .+++.+++.++..++++++|+++||+|||+++..+.++.+++.+.+.++++
T Consensus         5 ~~~~~~~p~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~   78 (377)
T PRK11102          5 LAIDMYLPALPVIAADFGVSAGS------VQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQT   78 (377)
T ss_pred             hHHHHHhccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHcc
Confidence            45567789999999999999999      999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCcccccccccccc
Q 011783          135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF  213 (477)
Q Consensus       135 ~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~  213 (477)
                      ++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+....+|..++|.+++.+.+       .++|+..+...
T Consensus        79 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~~~~~~~~~~  151 (377)
T PRK11102         79 IDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV-------WFSWHAIFWVL  151 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HcChHHHHHHH
Confidence            999999999999998888777 9999999999999999999999999999999999999987       34455444111


Q ss_pred             cc-hHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHHHHHHHHhhhhhh
Q 011783          214 PY-FLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAY  292 (477)
Q Consensus       214 ~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (477)
                      .. .....+.....+||+++.++++  +.+                .++.....++.++++.++...+...+.......+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (377)
T PRK11102        152 ALAAILAAALVFFFIPETLPKERRQ--PFH----------------LRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSF  213 (377)
T ss_pred             HHHHHHHHHHHHHhCCccCcccccC--CCC----------------hHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence            11 1111222233444443211100  000                0001124556788888776666555544444444


Q ss_pred             HHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011783          293 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFG  372 (477)
Q Consensus       293 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (477)
                      ..+.|.+..+.     +|+++.+.+.......++.++++. +.+++.||+++|+.+..+..+..+....+......+ ..
T Consensus       214 ~~~~~~~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  286 (377)
T PRK11102        214 LTAGPFVYIEL-----NGVSPQNFGYYFALNIVFLFVMTI-INSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLD-LG  286 (377)
T ss_pred             HHcCHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHh-hh
Confidence            44444444332     788999999999999999999988 889999999999998887765444333222221111 11


Q ss_pred             HHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHH-HHHHHHhhhH
Q 011783          373 LAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGM-SLFKAAGPAG  429 (477)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~g~~~~~~~  429 (477)
                      .+...... ...........+.......+..| +.++++.++.+... .+|..+++.+
T Consensus       287 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~  342 (377)
T PRK11102        287 FWALVVGV-AAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL  342 (377)
T ss_pred             HHHHHHHH-HHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence            11111111 11122233334444555666665 78999999987765 3555555554

>PRK15011 sugar efflux transporter B; Provisional

Probab=100.00  E-value=1e-29  Score=242.07  Aligned_cols=367  Identities=14%  Similarity=0.145  Sum_probs=241.5

Q ss_pred             HHHHHHHHHHHhhhchhchHhHHHH-HHHHhcccccchhhhhhhHHHHHHHHH-HHHHHhhhhhhhhhhcCCchhh-HHH
Q 011783           42 ELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGRKPVI-IMG  118 (477)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~g~~~s~~~~-~~~~~~~~~G~l~Dr~Grr~~~-~~~  118 (477)
                      .....++..++..+......|.+|. +.+|+|.+.++      +|++.+...+ ++.+++++.|+ +||+||||.+ ..+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~   88 (393)
T PRK15011         16 TSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAM------VGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFC   88 (393)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHH
Confidence            3455667788888898888999985 67889999999      9999876655 55566655555 9999999875 556


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccch--hhHHHHHHHHhHHHHHHHHhHHHHhhh
Q 011783          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQ--ALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (477)
Q Consensus       119 ~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (477)
                      .+..+++..+.+++++++++++.+.+.|...+...|. .+++.|+.++++|  +...++.+.+.++|.++||++++.+.+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~  168 (393)
T PRK15011         89 CLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAM  168 (393)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            6666777888889999998877766555555566776 8888888876655  344578889999999999999999988


Q ss_pred             ccccCCcccccccccccccc-hHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchh
Q 011783          196 PAEKYPNLFSSESLFGKFPY-FLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP  274 (477)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (477)
                             .++||..|..... .+...+.....+||.++.++.+++  +                .+    ..++  +.+.
T Consensus       169 -------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------------~~----~~~~--~~~~  217 (393)
T PRK15011        169 -------GFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLATG--T----------------LE----APRR--NRRD  217 (393)
T ss_pred             -------hcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccc--c----------------cc----cccc--cccc
Confidence                   4567666521111 111222223345554322111000  0                00    0000  1122


Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 011783          275 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  354 (477)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  354 (477)
                      .+...............+..+.|.|.++.     +|+++.+.+.+.....+..+++.. +.+++.||+++|+....+...
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~~~~~~~~g~~~~~~~~~~i~~~~-~~G~l~dr~g~~~~~~~~~~~  291 (393)
T PRK15011        218 TLLLFVICTLMWGTNSLYIINMPLFIINE-----LHLPEKLAGVMMGTAAGLEIPTML-IAGYFAKRLGKRFLMRVAAVA  291 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhChHHHHHHHHHH
Confidence            22222333333333444555677666543     788998999888877777777777 899999999999887766555


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHH
Q 011783          355 TIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALF  434 (477)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  434 (477)
                      ..+.+.......   +.  +.. .....+.++..+...+....+.+|..| +++|+++++.+...++|..++|.+.|.+.
T Consensus       292 ~~~~~~~~~~~~---~~--~~~-l~~~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~  364 (393)
T PRK15011        292 GVCFYAGMLMAH---SP--AIL-LGLQLLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVA  364 (393)
T ss_pred             HHHHHHHHHHHh---hH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444433222211   11  111 111222222333334444566778777 46999999999999999999999999999


Q ss_pred             HHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          435 SWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       435 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      ++.          ||+..|.+.+++.+++.+..++
T Consensus       365 ~~~----------g~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK15011        365 EIW----------NYHAVFWFALVMIIATLFCLLR  389 (393)
T ss_pred             HHh----------hhHHHHHHHHHHHHHHHHHHHh
Confidence            987          8888998888888877776655

>PRK11010 ampG muropeptide transporter; Validated

Probab=100.00  E-value=8.5e-30  Score=248.05  Aligned_cols=380  Identities=13%  Similarity=0.135  Sum_probs=267.1

Q ss_pred             hhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhc-----CCchh
Q 011783           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKPV  114 (477)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-----Grr~~  114 (477)
                      +|+...++...+...+......+.+|.+.++.|.+.++      +|.+ +.....+ ++++++|+++||+     ||||.
T Consensus        11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~------ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~   82 (491)
T PRK11010         11 QPNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKT------IGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRG   82 (491)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH------HHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchH
Confidence            34566777788888888889999999999999999988      8886 4444444 6899999999999     99986


Q ss_pred             -hHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhH
Q 011783          115 -IIMGTASVVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPAL  189 (477)
Q Consensus       115 -~~~~~~~~~i~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  189 (477)
                       +..+.+..+++...+++.   ++++.+.+.+++.|++.+...+. .+++.|++|+|||+++.++...+..+|.++++.+
T Consensus        83 ~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l  162 (491)
T PRK11010         83 WLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGL  162 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence             667778887887777665   47889999999999998887777 9999999999999999999999999999999999


Q ss_pred             HHHhhhccccCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhh
Q 011783          190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL  269 (477)
Q Consensus       190 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (477)
                      ++++.+..      ++||..|...........+..+..||+++..  + ++.+ .              +++...+.++.
T Consensus       163 ~~~l~~~~------~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~--~-~~~~-~--------------~~~~~~~l~~~  218 (491)
T PRK11010        163 ALWLADRY------LGWQGMYWLMAALLIPCIIATLLAPEPTDTI--P-VPKT-L--------------EQAVVAPLRDF  218 (491)
T ss_pred             HHHHHhcc------cCHHHHHHHHHHHHHHHHHHHHhcCCCcccc--c-cccc-h--------------hhhHHHHHHHH
Confidence            99988732      3555555211111122222222345533211  0 0000 0              00011245667


Q ss_pred             hcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHH-HHHHHHHHHHHHHHHHHHHhhcchhHH
Q 011783          270 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLA-ITGFSLLVFQLSLYPFLERILGPIMVA  348 (477)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~  348 (477)
                      ++++..+......+++.........+.+.|+.+     ..|+++.+.+.... ...++.+++.+ +++++.||+++|+.+
T Consensus       219 ~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~-----~~G~s~~~~g~~~~~~g~i~~iiG~l-l~G~L~dr~g~~~~l  292 (491)
T PRK11010        219 FGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIR-----GVGFDAGEVGLVNKTLGLLATIVGAL-YGGILMQRLSLFRAL  292 (491)
T ss_pred             HcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHH
Confidence            777777766655555554444445555555543     27999999999875 44567778877 999999999988877


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhh
Q 011783          349 RIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPA  428 (477)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~  428 (477)
                      ..+..+..+..+.+........ ..+ .+....++..+..+...+...++..+..+++.+++..|+.+....+|..+++.
T Consensus       293 ~i~~~l~~l~~l~~~~l~~~~~-~~~-~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~  370 (491)
T PRK11010        293 MIFGILQGVSNAGYWLLSITDK-NLY-SMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGP  370 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHhccc-cHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            7665554444333222111111 111 12222222223334445566778888899999999999999999999999999


Q ss_pred             HHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          429 GGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       429 ~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      +.|.+.|..          ||+..|.+.+++++.+.+....
T Consensus       371 ~~G~l~~~~----------G~~~~f~~~~~~~l~~l~~~~~  401 (491)
T PRK11010        371 VAGWFVEAH----------GWPTFYLFSVAAAVPGLLLLLV  401 (491)
T ss_pred             HHHHHHHHh----------ChHHHHHHHHHHHHHHHHHHHH
Confidence            999999987          8999999999998888777655

>TIGR00883 2A0106 metabolite-proton symporter

Probab=100.00  E-value=3.1e-30  Score=246.80  Aligned_cols=367  Identities=14%  Similarity=0.062  Sum_probs=246.5

Q ss_pred             HHhhhchhchHhHHHHHHHHhcc--cccchhhhhhhHHHHH-----HHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHH
Q 011783           51 LCTALPISSLFPFLYFMIKDFQI--AKREEDIGSYAGYVGS-----SFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (477)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~g~~~s-----~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~  123 (477)
                      +.++++...+....+.+.+++..  ++++      .+.+.+     ...++..+++++.|+++||+|||+++..+.++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~   76 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPL------VALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMG   76 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCCChH------HHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence            45678888888888888887654  3333      444333     3444556789999999999999999999999999


Q ss_pred             HHHHHHHhhhhHH--------HHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhh
Q 011783          124 IFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (477)
Q Consensus       124 i~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (477)
                      ++.++++++++++        .+++.|+++|++.+...+. .+++.|++|+++|++..+..+.+..+|.++++.++..+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~  156 (394)
T TIGR00883        77 IGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLS  156 (394)
T ss_pred             HHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998875        4889999999998888777 999999999999999999999999999999999887765


Q ss_pred             hccc-cCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcch
Q 011783          195 QPAE-KYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNW  273 (477)
Q Consensus       195 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (477)
                      .... ..-..++|+..+.................+|+++.+++++                   ++++...+.++.++++
T Consensus       157 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~  217 (394)
T TIGR00883       157 YLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQE-------------------KHKKKRGPIRETLTKH  217 (394)
T ss_pred             HhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHh-------------------ccccccCCHHHHHHhc
Confidence            3111 0001345655551100011111111112222221110000                   0111223455566665


Q ss_pred             h--hHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 011783          274 P--LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA  351 (477)
Q Consensus       274 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  351 (477)
                      +  ++......++..........+.|.|..+.     +|.++.+.+.......+...++.+ +.+++.||+++|+.+...
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g~~~~~~~~  291 (394)
T TIGR00883       218 RKPFLLGLGLVIATTTTFYLITTYLPTYLTQT-----LGLSANSALLVLMLSLILFFITIP-LSGALSDRIGRRPVLIIF  291 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHhchHHHHHHH
Confidence            4  55555555555555556666777776543     688888999999998999999988 889999999999877655


Q ss_pred             HHHHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHH-HHHHHHHHHHhhhH
Q 011783          352 GVLTIPLL-TSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIA-MTGMSLFKAAGPAG  429 (477)
Q Consensus       352 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~~~~~~  429 (477)
                      ..+..+.. ...........  .+ .......+.+++.+...+...++..|.+|++.|+++.++. +....+|..++|.+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~  368 (394)
T TIGR00883       292 TVLAALLAVPLLMALLDSGS--FT-LFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYI  368 (394)
T ss_pred             HHHHHHHHHHHHHHHhcCCc--hH-HHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHH
Confidence            44433322 22211111111  11 2223334445566677788889999999999999999985 44567888999999


Q ss_pred             HHHHHHHhhhhccccCCCC-chHHHHHHHHHHH
Q 011783          430 GGALFSWAQKRLDASFLPG-SQMVFFVLNVVEA  461 (477)
Q Consensus       430 ~g~l~~~~~~~~~~~~~~g-~~~~~~~~~~~~~  461 (477)
                      .|.+.++.          | ++..++...++++
T Consensus       369 ~g~l~~~~----------g~~~~~~~~~~~~~l  391 (394)
T TIGR00883       369 AAALVAMT----------GDWYAIGYYLAALAL  391 (394)
T ss_pred             HHHHHHHc----------CcchhHHHHHHHHHH
Confidence            99999987          4 5556555554443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00896 CynX cyanate transporter

Probab=100.00  E-value=7e-30  Score=240.34  Aligned_cols=334  Identities=16%  Similarity=0.081  Sum_probs=246.6

Q ss_pred             hchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhhhh
Q 011783           55 LPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN  134 (477)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~  134 (477)
                      .......+.+|.+.+|+|.+.++      .|++.+++.+++.+++++.|+++||+|||+++.++.++..++.+.+ .+++
T Consensus        14 ~~~~~~~~~lp~l~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~   86 (355)
T TIGR00896        14 PALTSVGPLLPQIRSALGMSFSV------AGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPG   86 (355)
T ss_pred             CccccCcccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhcc
Confidence            34466789999999999999999      9999999999999999999999999999999999999988888877 7789


Q ss_pred             HHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCcccccccccccc
Q 011783          135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF  213 (477)
Q Consensus       135 ~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~  213 (477)
                      ++.+++.|++.|++.+...+. ..++.|++| ++|++++++.+.+.++|..+++.+++.+.+....     +||..|...
T Consensus        87 ~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~-----~w~~~f~~~  160 (355)
T TIGR00896        87 TALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGG-----HWQQALAWW  160 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----hHHHHHHHH
Confidence            999999999999998887766 888889886 6899999999999999999999999988764211     144433100


Q ss_pred             cchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHHHHHHHHhhhhhhH
Q 011783          214 PYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYS  293 (477)
Q Consensus       214 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (477)
                        .....+.....+|+.++++++   +                  +.+.....++.+|+|.++...+..++.........
T Consensus       161 --~~~~~~~~~~~~~~~~~~~~~---~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (355)
T TIGR00896       161 --ALPALLALLAWIPQVRRRVAA---N------------------QTTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLI  217 (355)
T ss_pred             --HHHHHHHHHHHhhhhccccCC---C------------------CCCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHH
Confidence              111111222334443221110   0                  00011234567788888876666666555666666


Q ss_pred             HHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011783          294 EIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG-PIMVARIAGVLTIPLLTSYPYIAMLSGFG  372 (477)
Q Consensus       294 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (477)
                      .+.|.|..+      .|+++.+.+...+...++.+++++ ..+++.||++ +|+.+..+..+..++...+.+.....   
T Consensus       218 ~~lp~~~~~------~g~~~~~~g~~~~~~~~~~i~~~~-~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  287 (355)
T TIGR00896       218 GWLPAILIS------HGASAATAGSLLALMQLAQAASAL-LIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHG---  287 (355)
T ss_pred             HHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHH-hHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhH---
Confidence            778877753      688999999999999999999998 8899999994 56666666666666655554433211   


Q ss_pred             HHHHHHHHHHHHhhhhHHHHhHHHHHHhhc-CCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 011783          373 LAFLLNCASVVKNLLSVSIITGLFILQNRA-VDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQ  438 (477)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  438 (477)
                      .+  .  ...+.+++.+...+...+...+. .+++++++..++.+....++.+++|.+.|.+.|+.+
T Consensus       288 ~~--~--~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       288 LW--A--WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HH--H--HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            11  1  12334566666677766655543 445778999999999999999999999999999873

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.98  E-value=2.8e-29  Score=238.27  Aligned_cols=357  Identities=13%  Similarity=0.118  Sum_probs=253.4

Q ss_pred             HHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCc----hhhHHHHHHHHHH
Q 011783           50 VLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK----PVIIMGTASVVIF  125 (477)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr----~~~~~~~~~~~i~  125 (477)
                      .+...++.+++.|.+|.+.+|+|.|..+      +|++.+++.++..++++++|+++||+|||    +.+.+...+.  .
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~------iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~   84 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPET------IGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--A   84 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHH------HHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--H
Confidence            4555567788999999999999999999      99999999999999999999999999994    3333222221  2


Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCccc
Q 011783          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF  204 (477)
Q Consensus       126 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~  204 (477)
                      ......+++++.+++.|++.|++.+...|. .+++.++  +++|+++++......++|.++||++++++.+       .+
T Consensus        85 ~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~-------~~  155 (382)
T PRK11128         85 VAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVS-------WF  155 (382)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHH-------Hc
Confidence            223344688999999999999998887777 7777776  4678899999999999999999999999998       56


Q ss_pred             ccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHHHHHH
Q 011783          205 SSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCV  284 (477)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (477)
                      +|+..|...........+..+..||.+   +  +++.++.              .++...+.++++|+|.++...+..++
T Consensus       156 g~~~~f~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~--------------~~~~~~~~~~i~~~~~~~~~~~~~~l  216 (382)
T PRK11128        156 GEQAILWILTAGVASMLLGQLLRPTIM---P--QGESRQQ--------------ESAGWPAWKALLKEPTVWRFLLCVSL  216 (382)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHccCCCC---C--ccccccc--------------cccccchHHHHHcChhHHHHHHHHHH
Confidence            666655211111111111111122211   0  0000000              11123467889999999988777777


Q ss_pred             HHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 011783          285 FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPY  364 (477)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (477)
                      ..........+.+.|..+      .|.++.+.|.+.+...+..++... ..+++.||+++++.+..+.....+....+..
T Consensus       217 ~~~~~~~~~~~~~~~~~~------~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~  289 (382)
T PRK11128        217 LQGSHAAYYGFSAIYWQA------AGYSASTIGYLWSLGVVAEVLIFA-FSNRLFRRWSARDLLLLSAICGVVRWGLMGS  289 (382)
T ss_pred             HHHHhHhHHHHHHHHHHH------CCCCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh
Confidence            666666666777777643      688999999999988888888877 8899999999999988888777776655544


Q ss_pred             HHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHH-HHHHHHHHhhhHHHHHHHHhhhhccc
Q 011783          365 IAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMT-GMSLFKAAGPAGGGALFSWAQKRLDA  443 (477)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~~g~~~~~~~~g~l~~~~~~~~~~  443 (477)
                      ..+     .+ ...+..++.++..+...+....+..+. +++++++..+..+. ...+|..+||.++|.++|..      
T Consensus       290 ~~~-----~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~------  356 (382)
T PRK11128        290 TTA-----LP-WLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL------  356 (382)
T ss_pred             hhh-----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence            322     12 223344445666666677777777775 56678999998874 45777899999999999987      


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHHH
Q 011783          444 SFLPGSQMVFFVLNVVEAIGVLMT  467 (477)
Q Consensus       444 ~~~~g~~~~~~~~~~~~~~~~~~~  467 (477)
                          |+ ..|+..+++.+++.++.
T Consensus       357 ----g~-~~~~~~~~~~~~~~~~~  375 (382)
T PRK11128        357 ----GA-GVFWVMALVALPALFIR  375 (382)
T ss_pred             ----cH-HHHHHHHHHHHHHHHHH
Confidence                55 46666666666554443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.98  E-value=2e-30  Score=245.58  Aligned_cols=352  Identities=14%  Similarity=0.088  Sum_probs=246.1

Q ss_pred             HHHHHHHHHHhhhchhchHhHHHH-HHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHH
Q 011783           43 LFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (477)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~  121 (477)
                      ++..+++.++.........+.+|. +.+++|.++.+      .+++.+++.+++.+++++.|+++||+|||+.+.++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   76 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQ------LGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLL   76 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHH------hhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            456777888888888999999995 99999999999      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh-hHHHHHHHHHHhhhcccchhhHHHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhc----
Q 011783          122 VVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP----  196 (477)
Q Consensus       122 ~~i~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~----  196 (477)
                      ..++.+++++++ +++.+++.|+++|++.+...+..++++|++|+++|++++++.....++|..+++.+++.+...    
T Consensus        77 ~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~  156 (366)
T TIGR00886        77 LAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFG  156 (366)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999 999999999999998776655588999999999999999999988888888888888776542    


Q ss_pred             -----cccCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhc
Q 011783          197 -----AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK  271 (477)
Q Consensus       197 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (477)
                           ..+||+.+.+..    ........++.....+|.++.++++++...   ++   ....   .+++.....++.++
T Consensus       157 ~~~~~~~~w~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~---~~~~~~~~~~~~~~  223 (366)
T TIGR00886       157 AGLPAHLAWGWAFVIVP----AGILLLPALLIFFVGADTPPGKPATGKLSF---KG---ARWS---VGTGALGDQLKVFR  223 (366)
T ss_pred             ccccccccccchhHHHH----HHHHHHHHHHHHHhcccCCcccccchhccc---cc---cccc---ccchhHHHHHHHHh
Confidence                 124444432110    001112222223334444432111110000   00   0000   00111124566788


Q ss_pred             chhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 011783          272 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA  351 (477)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  351 (477)
                      +|+++...+..++..........+.+.|..+.     +|+++.+.+.+.....+..+++.+ +.+++.||+++|+....+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~r~g~~~~~~~~  297 (366)
T TIGR00886       224 DRHTWILALLYSVTFGSFLGVSSIFAMFFKDQ-----FGLSKVTAGAYASLGGLLGSLARP-LGGAISDRLGGARKLLMS  297 (366)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCcHHHHHHHHHHHHHHHHHHhh-ccchHHHhhccchhHHHH
Confidence            88888877777666666667777788777654     788999999999888898998887 889999999998877777


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHH
Q 011783          352 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLF  422 (477)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  422 (477)
                      ......+...+........ ..+ .............+...+.......+..| +++|+++|+.+..+++|
T Consensus       298 ~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       298 FLGVAMGAFLVVLGLVSPL-SLA-VFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHHHHHhcCCCcc-hHH-HHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            6655555444433222100 111 11111122223333344455666677666 78999999999887765

>TIGR00889 2A0110 nucleoside transporter

Probab=99.98  E-value=1.9e-29  Score=241.05  Aligned_cols=386  Identities=12%  Similarity=0.020  Sum_probs=258.5

Q ss_pred             HHHHHHHhhhchhchHhHHH-HHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCC-chhhHHHHHHHH
Q 011783           46 IWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-KPVIIMGTASVV  123 (477)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Gr-r~~~~~~~~~~~  123 (477)
                      +.+..+..+...++..|.++ .+.+++|.+..+      +|++.+++.++..++++++|+++||+|| |+++.++.++..
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~------iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~   80 (418)
T TIGR00889         7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAE------IGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGA   80 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            56667777788888877766 666789999999      9999999999999999999999999965 778888888888


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhh--------hhccccchhhHHHHHHHHhHHHHHHHHhHHHHhh
Q 011783          124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYAC--------EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (477)
Q Consensus       124 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~--------~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (477)
                      +...+..+.++++.+++.|++.|++.+...+. .++..        |......|.+..|      .+|.++||.+++.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~  154 (418)
T TIGR00889        81 LLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLD  154 (418)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhc
Confidence            88888888899999999999999987766554 44432        2233334445544      468888888888773


Q ss_pred             hccccCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchh
Q 011783          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP  274 (477)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (477)
                      . ...|.      ..+ .......+..+..+.+||.++.+++  ++.+ .              +++.+...++++|+|.
T Consensus       155 ~-~~~~~------~f~-~~~~~~~~~~~~~~~~~e~~~~~~~--~~~~-~--------------~~~~~~~~~~~~k~~~  209 (418)
T TIGR00889       155 I-ELSNI------QLY-ITAGSSALLGVFALTLPDIPVAKST--AKMS-I--------------KVMLGLDAFILFKNKR  209 (418)
T ss_pred             c-cchhH------HHH-HHHHHHHHHHHHHhcCCCCCCCccc--cccC-H--------------HHHhhhhHHHHhcCCC
Confidence            2 11122      111 0111111122223345554321110  0000 0              1111123456788888


Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCc--cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 011783          275 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGG--LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  352 (477)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  352 (477)
                      ++...+..++..........+.+.|..+......  -+++....+...+...+..+++.. ..+++.||+|+|+.+..+.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~-~~g~l~dr~g~r~~l~~~~  288 (418)
T TIGR00889       210 MAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFIL-TIPFFLKRFGIKKVMLLSL  288 (418)
T ss_pred             eeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHhCcHHHHHHHH
Confidence            8777777666554444444555555543100000  123446679999999999999987 8899999999999999998


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHH-HHHHHHHHHhhhHHH
Q 011783          353 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAM-TGMSLFKAAGPAGGG  431 (477)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~~~~~~~g  431 (477)
                      ++..+....+.....  .......+.+..++.+++.+...+....++.+.+|++.|++++|+.+ ....+|.++||.+.|
T Consensus       289 ~~~~v~~~l~~~~~~--~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G  366 (418)
T TIGR00889       289 VAWALRFGFFAYGDP--EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSG  366 (418)
T ss_pred             HHHHHHHHHHHHcCc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            888777655544211  11112223334444555566667777888999999999999999997 567899999999999


Q ss_pred             HHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhhhhhhccC
Q 011783          432 ALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRH  476 (477)
Q Consensus       432 ~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (477)
                      .++++.+....    .||+..|.+.+++.+++.++.++ +.+|++
T Consensus       367 ~l~~~~g~~~~----~~~~~~f~~~~~~~~i~~~l~~~-~~~~~~  406 (418)
T TIGR00889       367 VMVEKMFAYGT----FDWQTMWLFFAGYIAILAVLFMI-FFKYSH  406 (418)
T ss_pred             HHHHHhccccC----CchHHHHHHHHHHHHHHHHHHHH-HhCCcc
Confidence            99998633110    05888999888887777766655 455543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.98  E-value=4e-29  Score=237.82  Aligned_cols=356  Identities=12%  Similarity=0.082  Sum_probs=257.3

Q ss_pred             HHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHH
Q 011783           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (477)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~  121 (477)
                      .+..++...++..+..+...+.+|.+++++|.++.+      .|++.+.+.+++.+++++.|++.||+|||+++..+.++
T Consensus         4 ~~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~------~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l   77 (410)
T TIGR00885         4 PFALITSLFALWGFANDITNPMVPQFQQAFTLTAFQ------AALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFL   77 (410)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            356677778888888899999999999999999999      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh---hhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhcc
Q 011783          122 VVIFNTLFGL---SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (477)
Q Consensus       122 ~~i~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  197 (477)
                      ++++.+++..   .++++.+++.|++.|+|.|...+. .+++.+..|+++|++.+++.+...++|..+||.+++.+....
T Consensus        78 ~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~  157 (410)
T TIGR00885        78 YALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSN  157 (410)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999888654   358999999999999999998877 999999999999999999999999999999999999886421


Q ss_pred             cc--C-----------------CcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhh
Q 011783          198 EK--Y-----------------PNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEE  258 (477)
Q Consensus       198 ~~--~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (477)
                      .+  .                 ....+||..+.......... ..++.....|+  .+++++ +                
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~-~~~~~~~~~p~--~~~~~~-~----------------  217 (410)
T TIGR00885       158 LPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAV-ALLIMLTKMPA--LNHSDA-K----------------  217 (410)
T ss_pred             CccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCC--CCcccc-c----------------
Confidence            10  0                 01235666552111111111 11111111111  000000 0                


Q ss_pred             cccCCchhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011783          259 EGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFL  338 (477)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l  338 (477)
                      +.+.....++++|+|.++...+..+++.....+..++++.|..+.    ..+.+....+...+.......++++ +++++
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~----~~~~~~~~a~~~~~~~~~~~~vGR~-~~~~l  292 (410)
T TIGR00885       218 QISFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRL----IPGMTAGFAANYNIGAMVIFFISRF-IGTWL  292 (410)
T ss_pred             cccchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cCCCCHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            111112445678899988888888887777767777777776531    1244444455556555667778887 89999


Q ss_pred             HHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHH
Q 011783          339 ERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTG  418 (477)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  418 (477)
                      .||+++|+.+.....+..+..++......   ..    ......+.+++.+..+|..++...+..+++.+..+.++... 
T Consensus       293 ~~r~~~~~~l~i~~~~~~~~~ll~~~~~~---~~----~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~-  364 (410)
T TIGR00885       293 ISYLAAHKVLMAYAIIGMALCLGSIFAGG---HV----GLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA-  364 (410)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHcCC---hH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH-
Confidence            99999999888877777766666554332   11    12223333567778889999999998987665445555443 


Q ss_pred             HHHHHHHhhhHHHHHHHHh
Q 011783          419 MSLFKAAGPAGGGALFSWA  437 (477)
Q Consensus       419 ~~~g~~~~~~~~g~l~~~~  437 (477)
                       .+|+++.|.+.|.+.|..
T Consensus       365 -~~Gga~~p~l~G~~~d~~  382 (410)
T TIGR00885       365 -IIGGGIVPPLQGFIIDMK  382 (410)
T ss_pred             -HhccchHHHHHHHHHHHh
Confidence             399999999999999954

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.97  E-value=1.7e-30  Score=246.10  Aligned_cols=367  Identities=17%  Similarity=0.217  Sum_probs=269.5

Q ss_pred             HHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHhh
Q 011783           69 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLG  146 (477)
Q Consensus        69 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G  146 (477)
                      .+++.+.++      .|++.+.++.|+.+++++.|+++||+|.|+++..+.++.++++++...+.  +++.+++.|++||
T Consensus        66 ~~~~ws~~~------k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqG  139 (466)
T KOG2532|consen   66 GEYDWSSTE------KGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQG  139 (466)
T ss_pred             ceecCCHHH------HHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhH
Confidence            357777777      99999999999999999999999999999999999999999999998875  5568899999999


Q ss_pred             hcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCcccccccccccccchHHHHHHHH-
Q 011783          147 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISL-  224 (477)
Q Consensus       147 ~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  224 (477)
                      ++.|...|+ ..+.+.|.|++||++..++...+..+|.+++.+++|++.+...||++.|+..+..      .....++. 
T Consensus       140 l~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~------g~i~~~~w~  213 (466)
T KOG2532|consen  140 LGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIV------GLIWFILWF  213 (466)
T ss_pred             HHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHH------HHHHHHHHH
Confidence            999999998 9999999999999999999999999999999999999999544555555433222      22222222 


Q ss_pred             HhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcc
Q 011783          225 FAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPK  304 (477)
Q Consensus       225 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (477)
                      ++..|+|..++.-.++   +.+.+++...+... +++.+.+++++++++.+|...+..++.......+..+.|.|+.++ 
T Consensus       214 ~~~~d~P~~h~~is~~---El~~I~~~k~~~~~-~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~V-  288 (466)
T KOG2532|consen  214 LFYSDSPSKHPNISEK---ELKYIEKGKSEAHV-KKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEV-  288 (466)
T ss_pred             HHhcCCcccCCCCCHH---HHHHHHhccccccc-CCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-
Confidence            2222444332211111   11222222221111 112577899999999999999999999999999999999999987 


Q ss_pred             cCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc---------hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 011783          305 KLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP---------IMVARIAGVLTIPLLTSYPYIAMLSGFGLAF  375 (477)
Q Consensus       305 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (477)
                          +|++..+.|++.++..+...+..+ +++.++||..+         |..-.++....++.++.+.+...........
T Consensus       289 ----L~f~v~~~G~~salP~l~~~~~k~-~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~  363 (466)
T KOG2532|consen  289 ----LGFDVRETGFLSALPFLAMAIVKF-VAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVI  363 (466)
T ss_pred             ----hCCChhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHH
Confidence                899999999999999999999988 99999998755         2223344455555555555555433211122


Q ss_pred             HHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHH
Q 011783          376 LLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFV  455 (477)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~  455 (477)
                      .+.+...+    .+...+..+.-..+. .++..+..+|+.+....+.++++|.+.|.+.... +..      .|+.+|++
T Consensus       364 ~l~~~~~~----~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~-t~~------eW~~VF~i  431 (466)
T KOG2532|consen  364 LLTIAIGL----SGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDN-TRE------EWRIVFLI  431 (466)
T ss_pred             HHHHHHHH----cccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCC-CHH------HHHHHHHH
Confidence            22222221    122222222222222 4688999999999999999999999999998521 221      69999999


Q ss_pred             HHHHHHHHHHHHhh
Q 011783          456 LNVVEAIGVLMTFK  469 (477)
Q Consensus       456 ~~~~~~~~~~~~~~  469 (477)
                      .+++.+++.+...+
T Consensus       432 ~a~i~~~~~i~f~~  445 (466)
T KOG2532|consen  432 AAGILIVGNIIFLF  445 (466)
T ss_pred             HHHHHHHhchheeE
Confidence            99999998866544

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.97  E-value=3.3e-29  Score=241.04  Aligned_cols=381  Identities=13%  Similarity=0.075  Sum_probs=243.4

Q ss_pred             hHHHHHHHHHHHhhhchhchHhHHHHH-HHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHH
Q 011783           41 TELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (477)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~  119 (477)
                      +.++.+....++..+..+...+.+|.+ .+++|.+..+      +|++.+++.++..++++++|+++||+|||++++++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~------~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~   83 (420)
T PRK09528         10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTD------TGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWII   83 (420)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence            356666677788888888888999854 5559999999      999999999999999999999999999999998877


Q ss_pred             HHHHHHHHHHH---hhh-----hHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHH
Q 011783          120 ASVVIFNTLFG---LSV-----NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (477)
Q Consensus       120 ~~~~i~~~~~~---~~~-----~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  190 (477)
                      .+.++......   .++     .+...++.+++.|.+.....+. ..+..+ . .+++++.++......++|..++|+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~  161 (420)
T PRK09528         84 SGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIA  161 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHH
Confidence            66655433221   111     1111223333344333333333 333322 2 34677888999999999999999999


Q ss_pred             HHhhhccccCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhh
Q 011783          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLL  270 (477)
Q Consensus       191 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (477)
                      +.+.+.  +|++.|..      ........+...+..++.+++++..+++.+             ++++....+..++.+
T Consensus       162 g~l~~~--~~~~~f~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l  220 (420)
T PRK09528        162 GILFNI--NPQINFWL------GSGSALILLVLLFFAKPDAPSTAKVANALG-------------ANASAVSLKDALALL  220 (420)
T ss_pred             HHHHhc--CchHhHHH------HHHHHHHHHHHHhcccccccchhhhccchh-------------cccccccHHHHHHHc
Confidence            998762  34333211      111111111111122111111000000000             000111123345677


Q ss_pred             cchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 011783          271 KNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI  350 (477)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  350 (477)
                      |+|.++...+..+........+....+.|..+..  .+.+.+..+.|.+.+...+...++.+ ..+++.||+++|+.+..
T Consensus       221 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~g~~~~~~~  297 (420)
T PRK09528        221 KLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFF--ATPEQGTRVFGYLNSFQVFLEALIMF-FAPFIINRIGAKNALLL  297 (420)
T ss_pred             cCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHH--hccCcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCcchhhHH
Confidence            8888776555444443333444445666654321  12356677889999988888888887 89999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHH-HHHHHHHHHHHhhhH
Q 011783          351 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGI-AMTGMSLFKAAGPAG  429 (477)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~g~~~~~~~  429 (477)
                      +..+..+....+.+..+   .  + .+.....+.+.......+....+..+..|++.+++..+. .++...+|.+++|.+
T Consensus       298 ~~~l~~~~~~l~~~~~~---~--~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~  371 (420)
T PRK09528        298 AGTIMAVRIIGSGFATG---P--L-EVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTL  371 (420)
T ss_pred             HHHHHHHHHHHHHhccc---H--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHH
Confidence            88877776666554332   1  1 122233333444455556666788888999999988766 677889999999999


Q ss_pred             HHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          430 GGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       430 ~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      .|++.|..          ||+..|...+++.++..++...
T Consensus       372 ~G~l~~~~----------G~~~~f~~~~~~~~i~~~~~~~  401 (420)
T PRK09528        372 AGNLYDSI----------GFQGTYLILGGIVLLFTLISVF  401 (420)
T ss_pred             HHHHHHhh----------CchHHHHHHHHHHHHHHHHHHH
Confidence            99999988          8999999888887776665554

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.97  E-value=7.8e-28  Score=230.03  Aligned_cols=371  Identities=14%  Similarity=0.167  Sum_probs=252.6

Q ss_pred             HHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhc-----CCch-hhHHHH
Q 011783           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKP-VIIMGT  119 (477)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-----Grr~-~~~~~~  119 (477)
                      +...++.+.+..+.....+|.+.++.|.+.++      +|++..+...  .+.++++|+++||+     |||| .+..+.
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~------ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~   75 (402)
T PRK11902          4 MLLLGFASGLPLALTSGTLQAWMTVEGLDIQT------IGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQ   75 (402)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHH
Confidence            34556777788888999999999999999999      9999777765  59999999999999     8876 788888


Q ss_pred             HHHHHHHHHHHhh---hhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhh
Q 011783          120 ASVVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (477)
Q Consensus       120 ~~~~i~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (477)
                      ++.+++..+.++.   .+++.+++..++.++..+...+. .+++.|++|+|||+++.++...+..+|.++++.+++.+.+
T Consensus        76 ~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~  155 (402)
T PRK11902         76 VGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLAD  155 (402)
T ss_pred             HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence            8888888877776   35788888888888888888887 9999999999999999999999999999999999998877


Q ss_pred             ccccCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhh
Q 011783          196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPL  275 (477)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (477)
                      ..      ++||..|...........+..+..||++++++++    +..              +++.....++++|+|.+
T Consensus       156 ~~------~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~~~~----~~~--------------~~~~~~~~~~l~~~~~~  211 (402)
T PRK11902        156 RV------LGWGNTYLLMAGLMLAGALTTLWAPEPEVPARPP----RSL--------------GEAVVGPLRDFFSRRGA  211 (402)
T ss_pred             cc------cCHHHHHHHHHHHHHHHHHHHHhcCCCccccccc----chh--------------HHHHHHHHHHHHhCcCH
Confidence            32      3555555211111111122223344432211100    000              00112356778899998


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHH-HHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 011783          276 MSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGF-SLLVFQLSLYPFLERILGPIMVARIAGVL  354 (477)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  354 (477)
                      +..++..++..........+.+.++.+     ++|+++.+.+.+....+. +.+++.. +.+++.||+++|+.+..+..+
T Consensus       212 ~~~l~~~~l~~~~~~~~~~~~~~~l~~-----~~G~~~~~~g~~~~~~~~~~~i~g~~-~~g~l~~r~g~~~~l~~~~~~  285 (402)
T PRK11902        212 WALLLLIVLYKLGDAFAGSLSTTFLIR-----GAGFSAGEVGIVNKTLGLAATIVGAL-AGGTLMVRLGLYRSLMLFGVL  285 (402)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHH-----hcCCCHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHH
Confidence            877766666554333332333333332     378999999998876554 4667766 899999999998887776666


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHH---HHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHH
Q 011783          355 TIPLLTSYPYIAMLSGFGLAFLLN---CASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGG  431 (477)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g  431 (477)
                      ..+..+.+.......+. .+....   +..+..++...........++++..|.++    .+..+....++..+++.++|
T Consensus       286 ~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G  360 (402)
T PRK11902        286 QAVSNLGYWVLAVTPKH-LWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSG  360 (402)
T ss_pred             HHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHH
Confidence            55544333222211111 111111   11123344445556666666666666444    45556666777777777999


Q ss_pred             HHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          432 ALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       432 ~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      .+.|..          ||+..|...+++++++.++...
T Consensus       361 ~l~~~~----------G~~~~f~~~~~~~~~~~~~~~~  388 (402)
T PRK11902        361 YLVEAY----------GWPGFYLMTVVIALPGLALLWL  388 (402)
T ss_pred             HHHHHh----------ChHHHHHHHHHHHHHHHHHHHH
Confidence            999998          9999999999888888776554

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.97  E-value=1.9e-28  Score=234.07  Aligned_cols=379  Identities=14%  Similarity=0.135  Sum_probs=254.5

Q ss_pred             hHHHHHHHHHHHhhhchhchHhHHHHH-HHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHH
Q 011783           41 TELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (477)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~  119 (477)
                      +.++.+....++.+.......|.+|.+ .+++|.++.+      .|++.+++.++..+++++.|+++||+|||+.++.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~   75 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTD------TGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWII   75 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            346667778888888889999999855 5678999999      999999999999999999999999999999999887


Q ss_pred             HHHHHHHHHHH---hh-----hhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHH
Q 011783          120 ASVVIFNTLFG---LS-----VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (477)
Q Consensus       120 ~~~~i~~~~~~---~~-----~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  190 (477)
                      ...++......   +.     +.+..+++.|++.|++.+...+. ..+..|..  +++++.++......++|.++||.++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~  153 (396)
T TIGR00882        76 SGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIA  153 (396)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHH
Confidence            76665443321   11     23345567788899988877776 77776653  3345677888888999999999999


Q ss_pred             HHhhhccccCCcccccccccccccchHHHHHHHHHhh-ccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhh
Q 011783          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAF-GETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL  269 (477)
Q Consensus       191 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (477)
                      +.+.+  .+|+..|....      .......+..+.. +|.++++     +.+   ++.+      .++++++..+.+++
T Consensus       154 g~l~~--~~~~~~f~~~~------~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~------~~~~~~~~~~~~~~  211 (396)
T TIGR00882       154 GILFS--IDPQIVFWLGS------GFALILMLLLMFAKPKAPSSA-----TVA---NALG------ANASAFSLKLALEL  211 (396)
T ss_pred             hhhhc--cCchHHHHHHH------HHHHHHHHHHHHhCCCCchhh-----hhh---cccc------cccCCCCHHHHHHH
Confidence            98865  24443332111      1111111122222 2211110     000   0000      00011122356788


Q ss_pred             hcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Q 011783          270 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  349 (477)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  349 (477)
                      +|||+++..++..+.............+.|..+...  +.+.+....|...+...+...++.. ..+++.||+++|+.+.
T Consensus       212 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~--~~~~~~~~~g~~~~~~~i~~~~~~~-~~g~l~~r~g~~~~l~  288 (396)
T TIGR00882       212 FRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFA--TPQQGTRVFGYVTTMGELLNALIMF-CAPLIINRIGAKNALL  288 (396)
T ss_pred             HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccchhHH
Confidence            899988776666555544444455566667654321  1355666778888888888888877 8899999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHH-HHHHHHHHHHHhhh
Q 011783          350 IAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGI-AMTGMSLFKAAGPA  428 (477)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~g~~~~~~  428 (477)
                      .+..+.++.........+     .+ .+.....+.+.+..........+..+..|++.+++..+. .+....+|++++|.
T Consensus       289 ~~~~l~~l~~~~~~~~~~-----~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~  362 (396)
T TIGR00882       289 IAGTIMSVRIIGSSFATT-----AL-EVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLST  362 (396)
T ss_pred             HHHHHHHHHHHHHHhcCC-----hH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHH
Confidence            888777776555443221     11 112223333444444444445566777788888887766 67788999999999


Q ss_pred             HHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHh
Q 011783          429 GGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF  468 (477)
Q Consensus       429 ~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  468 (477)
                      +.|++.|..          ||+.+|.+.+++.++..+...
T Consensus       363 l~G~l~~~~----------G~~~~f~~~~~~~~i~~~~~~  392 (396)
T TIGR00882       363 LAGNMYDSI----------GFQGAYLVLGCIVLLFTLISV  392 (396)
T ss_pred             hHHHHHHhc----------ccHHHHHHHHHHHHHHHHHHH
Confidence            999999988          899999999888877766544

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.97  E-value=2.5e-28  Score=264.23  Aligned_cols=366  Identities=15%  Similarity=0.057  Sum_probs=254.1

Q ss_pred             hHHHHHHHHHHHhhhch-hchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHH
Q 011783           41 TELFSIWIIVLCTALPI-SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (477)
Q Consensus        41 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~  119 (477)
                      +.+..++++.++..+.. .......+.+.++++.+...    ...+++.+++.+++.++++++|+++||+|||++++++.
T Consensus         9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~   84 (1146)
T PRK08633          9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQV----ILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVK   84 (1146)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHH----HHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHH
Confidence            44555566666655544 34445556677777665433    22789999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHH---hhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhh
Q 011783          120 ASVVIFNTLFG---LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (477)
Q Consensus       120 ~~~~i~~~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (477)
                      ++..+..++..   .+++++.+++.|+++|++.+...+. .++++|++|+++|++++++.+.+..+|.++|+++++++..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~  164 (1146)
T PRK08633         85 LFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE  164 (1146)
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            77666555443   4578999999999999999999888 9999999999999999999999999999999999999987


Q ss_pred             ccc--cCCcccccccccccc-cchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcc
Q 011783          196 PAE--KYPNLFSSESLFGKF-PYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  272 (477)
Q Consensus       196 ~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (477)
                      ...  +.....+|.+.+... ....++.++..+.+|+.+.....+.++.+..             ........++.++++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~  231 (1146)
T PRK08633        165 SVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKYL-------------FPKLLWRNLKLLRSD  231 (1146)
T ss_pred             hhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccccc-------------cHHHHHHHHHHHhcC
Confidence            310  000000111111000 0111111222333455443222110000000             001112345667888


Q ss_pred             hhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchh-hhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 011783          273 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQ-MVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA  351 (477)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  351 (477)
                      +.++..++..++.......+..+++.|....     +|++.. +.+++.+...++.+++++ +.+++.||.++++.+.++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~g~~~~~~~ig~~~g~~-~~g~l~~r~~~~~~~~~~  305 (1146)
T PRK08633        232 RVLWLAIIGLSYFWFISQLAQANFPAYAKEV-----LGLDNTFQVQYLLAASAIGIGIGSL-LAGRLSGRHIELGLVPLG  305 (1146)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----hCCCcHHHHHHHHHHHHHHHHHHHH-HHHHHhCCceEccchhHH
Confidence            8888777766666655556666777776644     788888 899999999999999988 889999999988888777


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHH
Q 011783          352 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGG  431 (477)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g  431 (477)
                      .++.+++.+.+.+...      .....+..++.+++.+...+...+++.+..|++.||+++|+.+++..+|.++++.+++
T Consensus       306 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~  379 (1146)
T PRK08633        306 ALGLALSLFLLPTAPS------LASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTT  379 (1146)
T ss_pred             HHHHHHHHHHHHHhhh------HHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            7766666655544332      1123334444556667777778889999999999999999999999999988887776


Q ss_pred             HHHH
Q 011783          432 ALFS  435 (477)
Q Consensus       432 ~l~~  435 (477)
                      .+..
T Consensus       380 ~l~~  383 (1146)
T PRK08633        380 LFSG  383 (1146)
T ss_pred             HHHH
Confidence            6544

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.97  E-value=1.5e-28  Score=264.80  Aligned_cols=342  Identities=14%  Similarity=0.058  Sum_probs=240.5

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHH---HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHh
Q 011783           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM---GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYA  159 (477)
Q Consensus        84 ~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~---~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i  159 (477)
                      .++..+++.+++.++++++|+++||+|||+++..   ..+...+..+.....+++++++++|+++|++.+...|+ .+++
T Consensus        54 ~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l  133 (1140)
T PRK06814         54 VTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSIL  133 (1140)
T ss_pred             HHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhh
Confidence            7889999999999999999999999999998643   22233333333334589999999999999999999998 9999


Q ss_pred             hhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCcccccccccccccchHHHHHHHHHhhccccccCCCCCC
Q 011783          160 CEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDD  239 (477)
Q Consensus       160 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  239 (477)
                      .|++|+++|++++++.+++.++|.++||+++|++..       .++|+..|.......+..++..+.+|+.+...+..+.
T Consensus       134 ~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (1140)
T PRK06814        134 PDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI-------SGNFVILVALLMGIAVLGWLASLFIPKTGNAAPDLKI  206 (1140)
T ss_pred             HhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh-------ccccHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCee
Confidence            999999999999999999999999999999999988       4455544311111112222223334443221111100


Q ss_pred             ccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHH
Q 011783          240 SCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEV  319 (477)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~  319 (477)
                      +...               ..+....++.+.+++.++...+..++..+....+..++|.|+.+.     +|.++.+.|.+
T Consensus       207 ~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~g~~~~~~g~~  266 (1140)
T PRK06814        207 DRNI---------------IRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKET-----LGGDENVATLF  266 (1140)
T ss_pred             ccch---------------HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----cCCchHHHHHH
Confidence            0000               001123567788899999888887777766667777888887754     78899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH---------------hhhhhHHHHHHHHHHHH
Q 011783          320 LAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAM---------------LSGFGLAFLLNCASVVK  384 (477)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~  384 (477)
                      .+..+++.+++++ +.+++.++..+++.+..+.++..+..+.+.+...               ......+ .+.+..++.
T Consensus       267 ~~~~~~g~~ig~~-~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  344 (1140)
T PRK06814        267 LAVFSVGVAVGSF-LASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGW-RILIDLFGL  344 (1140)
T ss_pred             HHHHHHHHHHHHH-HHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccH-HHHHHHHHH
Confidence            9999999999998 8888887776666555555544444333332100               0001112 233444445


Q ss_pred             hhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHH
Q 011783          385 NLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIG  463 (477)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  463 (477)
                      +++.+...+...+++++.+|++.+|+++|+.+++..++..+++.+.|.+.+...         ++...+++.+++.++.
T Consensus       345 g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~---------~~~~~~~~~~~~~~~~  414 (1140)
T PRK06814        345 AAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGF---------SIPWIILFIALANLIV  414 (1140)
T ss_pred             HHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhcc---------CHHHHHHHHHHHHHHH
Confidence            677777778889999999999999999999999999999999999999875431         4555555554443333

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.97  E-value=3.7e-27  Score=228.38  Aligned_cols=405  Identities=13%  Similarity=0.081  Sum_probs=263.5

Q ss_pred             hHHHHHHHHHHHhhhchhchHhHHHHHHH-H--hcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhh-cCCchhhH
Q 011783           41 TELFSIWIIVLCTALPISSLFPFLYFMIK-D--FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVII  116 (477)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~Grr~~~~  116 (477)
                      +.++.+.+..+++.++.+...+.+|.+.+ +  +|.+..+      .|++.+.+.++..++++++|+++|| +|||+++.
T Consensus        10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~------ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~   83 (475)
T TIGR00924        10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQ------AFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMV   83 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH------HHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHH
Confidence            45677788888999999988999986654 4  8999999      9999999999999999999999999 89999999


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccc---hhhHHHHHHHHhHHHHHHHHhHHHH
Q 011783          117 MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEH---QALGLSTVSTAWGIGLIIGPALGGF  192 (477)
Q Consensus       117 ~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~g~~~~~~  192 (477)
                      ++.++.+++.++.+++++++.+++.|++.|++.|...|. .++++|++|+++   |++++++++.+.++|..+||.++++
T Consensus        84 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~  163 (475)
T TIGR00924        84 LGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGV  163 (475)
T ss_pred             HHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998887 899999998764   8899999999999999999999999


Q ss_pred             hhhccccCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhh---------------hh---cc
Q 011783          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALES---------------AS---AE  254 (477)
Q Consensus       193 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------------~~---~~  254 (477)
                      +.+       .++|+..|..........++..+...+..++.+.++++.+...++...               ..   ..
T Consensus       164 l~~-------~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (475)
T TIGR00924       164 IAE-------NYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHV  236 (475)
T ss_pred             HHH-------hcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            987       445655552111111122222222232221111111100000000000               00   00


Q ss_pred             -ch---------------hh-cccCCchhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhH
Q 011783          255 -VK---------------EE-EGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVG  317 (477)
Q Consensus       255 -~~---------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g  317 (477)
                       ..               .+ ..+......+..|...+....+...++........+.++.+..+....+-.++ ....+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~-~ip~~  315 (475)
T TIGR00924       237 VIANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGM-SVPVI  315 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccce-EECHH
Confidence             00               00 00000011111122223333444444444444555555555543211110111 12267


Q ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHh-hcchhHH--HHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHhhhh
Q 011783          318 EVLAITGFSLLVFQLSLYP---FLERI-LGPIMVA--RIAGVLTIPLLTSYPYIAMLS---GFGLAFLLNCASVVKNLLS  388 (477)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~---~l~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  388 (477)
                      .+.+.+.+..++.++++..   ++.|| .+++...  ..|.++.++++..+.......   .......++....+.+++.
T Consensus       316 ~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge  395 (475)
T TIGR00924       316 WFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGE  395 (475)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHH
Confidence            8888888888888774433   34443 2233333  567777776766554321110   1122334555666778899


Q ss_pred             HHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHh
Q 011783          389 VSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF  468 (477)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  468 (477)
                      ....|..+++..+..|++.||+.+|+......+|..+++.+.+...+..          ++...|...++++++..++.+
T Consensus       396 ~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~  465 (475)
T TIGR00924       396 LMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ----------GVTGVFGKIGLVTLLVGVVMA  465 (475)
T ss_pred             HHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------chhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988888877665543          566677777766666655554


Q ss_pred             h
Q 011783          469 K  469 (477)
Q Consensus       469 ~  469 (477)
                      .
T Consensus       466 ~  466 (475)
T TIGR00924       466 L  466 (475)
T ss_pred             H
Confidence            4

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.97  E-value=2e-27  Score=230.13  Aligned_cols=411  Identities=14%  Similarity=0.052  Sum_probs=259.3

Q ss_pred             hhHHHHHHHHHHHhhhchhchHhHHH-HHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhh-cCCchhhHH
Q 011783           40 ITELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIM  117 (477)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~Grr~~~~~  117 (477)
                      ++.++.++...+.+.++.+...+.++ ++.+++|.+..+      .+++.+.+.....+..+++|+++|| +||||++++
T Consensus        13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~------a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~   86 (489)
T PRK10207         13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQ------AFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVL   86 (489)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHH
Confidence            46677888888888888888877776 667889999998      9999999998888899999999999 999999999


Q ss_pred             HHHHHHHHHHHHHhhhhHHH-HHHHHHHhhhcccchhhH-HHHhhhhcccc--chhhHHHHHHHHhHHHHHHHHhHHHHh
Q 011783          118 GTASVVIFNTLFGLSVNFWM-AVLTRFLLGSLNGLLGPI-KAYACEIFREE--HQALGLSTVSTAWGIGLIIGPALGGFL  193 (477)
Q Consensus       118 ~~~~~~i~~~~~~~~~~~~~-l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~l  193 (477)
                      +.+++.++.+.++++++... ++++|+++|+|.|...|. .++++|.+|++  +|++++++++.+.++|..+||.+++++
T Consensus        87 g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l  166 (489)
T PRK10207         87 GAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVI  166 (489)
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999876444 558999999999998887 99999999877  458899999999999999999999999


Q ss_pred             hhccccCCcccccccccccccchHHHHHHHHHhhccccccCCCCC-C-ccchhhhh------------hhhhhcc--chh
Q 011783          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDD-D-SCDVSYDA------------LESASAE--VKE  257 (477)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~~~~~------------~~~~~~~--~~~  257 (477)
                      .+       .++|+++|...+...+..++.+...++..+..+.++ + +.|.....            .......  ...
T Consensus       167 ~~-------~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  239 (489)
T PRK10207        167 AD-------KFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVAN  239 (489)
T ss_pred             HH-------hhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            88       446666662211112222222333333222211111 1 11110000            0000000  000


Q ss_pred             --------------hcccCCchhhhhhcchhhHHHHHH--HHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHH
Q 011783          258 --------------EEGREATPKKSLLKNWPLMSSIIV--YCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLA  321 (477)
Q Consensus       258 --------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~  321 (477)
                                    ...+  ....+.+|+|.+....+.  ..++..........++.|.++.......|+.. ..+.+.+
T Consensus       240 ~~~~~~~~i~~~~f~~~~--~~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i-~~~~~~~  316 (489)
T PRK10207        240 LVLIVLSIVVTIIFFREA--FKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSI-NPVSFQA  316 (489)
T ss_pred             HHHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEE-CHHHHHh
Confidence                          0000  001145566654443322  22233333333345555655321212123322 1234444


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchh-------HHHHHHHHHHHHHHHHHHH----HHhhhhhHHHHHHHHHHHHhhhhHH
Q 011783          322 ITGFSLLVFQLSLYPFLERILGPIM-------VARIAGVLTIPLLTSYPYI----AMLSGFGLAFLLNCASVVKNLLSVS  390 (477)
Q Consensus       322 ~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  390 (477)
                      .+.+..++.++ +.+++.||.++|+       .+..|.++.+++++.+...    ...........+....++.+.+...
T Consensus       317 ~n~~~iii~~p-l~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~  395 (489)
T PRK10207        317 LNPFWVVVASP-ILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELF  395 (489)
T ss_pred             HhHHHHHHHHH-HHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHH
Confidence            55566666666 5678999998776       3666777766665443211    1111111222344566667888999


Q ss_pred             HHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHH
Q 011783          391 IITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT  467 (477)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  467 (477)
                      ..+...+++.+..|++.+|.++|+.+....+|+.++..+++...............+.+...|...++..+++.++.
T Consensus       396 ~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~  472 (489)
T PRK10207        396 ISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVM  472 (489)
T ss_pred             HhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988776542111000000000135566776666555544443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.97  E-value=4.2e-27  Score=208.99  Aligned_cols=376  Identities=18%  Similarity=0.186  Sum_probs=291.3

Q ss_pred             chhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHH
Q 011783           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (477)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~  118 (477)
                      .+..+..+....++..+......+.+|.+++.|+++..|      .+++..+++.+|.+++++.|++.+|+|+|+-++.+
T Consensus        11 ~~~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~------a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lg   84 (422)
T COG0738          11 VKLAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFE------ASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLG   84 (422)
T ss_pred             ceeHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHH------HHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHH
Confidence            345566777788888889999999999999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH---hhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhh
Q 011783          119 TASVVIFNTLFG---LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (477)
Q Consensus       119 ~~~~~i~~~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (477)
                      +.+++++..++.   ...++..++++-++.|.|.+...++ +.+++...|+++-...+++.+..+++|..+||++++.+.
T Consensus        85 L~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~li  164 (422)
T COG0738          85 LLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLI  164 (422)
T ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            999999999884   5568999999999999999998888 999999999999999999999999999999999999988


Q ss_pred             hcc----------ccCCc--ccccccccccccchHHHHHHHHHhh--ccccccCCCCCCccchhhhhhhhhhccchhhcc
Q 011783          195 QPA----------EKYPN--LFSSESLFGKFPYFLPCLCISLFAF--GETLHRHNDDDDSCDVSYDALESASAEVKEEEG  260 (477)
Q Consensus       195 ~~~----------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (477)
                      .+.          ..|+.  .-.+     +.++......+.++.+  .+++.++.++ ++.+.               .+
T Consensus       165 ls~~~~~~~~~~~~~~~~~~~~~v-----~~pYl~~~~~lvll~v~~~~~k~p~~~~-~~~~~---------------~~  223 (422)
T COG0738         165 LSGVALTMSAAQILAIKGADASSV-----QFPYLILAGLLVLLAVLILLSKLPDLQV-AAPSL---------------GA  223 (422)
T ss_pred             HhhhhhccCHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHhccCCcCCc-ccccc---------------cc
Confidence            731          11111  1112     3333433333322222  1222221111 11110               11


Q ss_pred             cCCchhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011783          261 REATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLER  340 (477)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~  340 (477)
                      +......+++|+|+++...+..+++........++++.|+.+.     .|.+..+.+...+....+.++|+. ++.++.+
T Consensus       224 ~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~-----~g~~~~~aa~~~s~~~~~~~vGRF-ig~~lm~  297 (422)
T COG0738         224 SGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEEL-----LGLNEQQAAYYLSFFWVGFMVGRF-IGSALMS  297 (422)
T ss_pred             cccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            1112678899999999999999999999999999999998875     788999999999999999999998 8888888


Q ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHH
Q 011783          341 ILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMS  420 (477)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  420 (477)
                      |++..+.+....++..+.++...+...       .+......+.+++.+..+|...+...+..| ++.. ..|..-.+..
T Consensus       298 ~~~~~k~Laf~a~~~ill~~~~~l~~g-------~v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts-~~s~~l~mai  368 (422)
T COG0738         298 RIKPEKYLAFYALIAILLLLAVALIGG-------VVALYALFLIGLFNSIMFPTIFSLALKNLG-EHTS-VGSGLLVMAI  368 (422)
T ss_pred             HhCHHHHHHHHHHHHHHHHHHHHHhcC-------hHHHHHHHHHHHHhHHHHHHHHHHHHhccC-cccc-ccceeeeehe
Confidence            999999988877776666666655544       123333344577889999999999999998 4333 4444456678


Q ss_pred             HHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHH
Q 011783          421 LFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM  466 (477)
Q Consensus       421 ~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  466 (477)
                      +|+++-|.+.|++.|..          |....+.....+|.+..+.
T Consensus       369 vGGAiiP~l~G~i~d~~----------g~~~~~~~~pllc~lyV~~  404 (422)
T COG0738         369 VGGAIIPPLQGVIADMF----------GIQLTFLIVPLLCYLYVLF  404 (422)
T ss_pred             ecchHHHHHHHHHHHhh----------hhHHHHHHHHHHHHHHHHH
Confidence            89999999999999998          5555665555555555533

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.7e-29  Score=220.28  Aligned_cols=378  Identities=18%  Similarity=0.177  Sum_probs=266.3

Q ss_pred             HHHHHHHHHHhhhchhchHhHHHHHHHHhcc--------------------------------------------cccch
Q 011783           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQI--------------------------------------------AKREE   78 (477)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------s~~~~   78 (477)
                      +..+..+.+.+.+....+.|.+|.+..|.+.                                            .....
T Consensus        23 lviv~ialllDnmL~~vivPiiP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~~~  102 (464)
T KOG3764|consen   23 LVIVSIALLLDNMLYTVIVPIIPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAEAISLD  102 (464)
T ss_pred             EEEEehhhhccCccceeeeccCccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchhccCcc
Confidence            4456677777777788888888877666652                                            00001


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HH
Q 011783           79 DIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KA  157 (477)
Q Consensus        79 ~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~  157 (477)
                      .....+|++.+++.+...+.+++.|.+.||+|+|..+++|+.++..+++++++.++++.++++|.+||+|.+...++ .+
T Consensus       103 ~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgla  182 (464)
T KOG3764|consen  103 RENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLA  182 (464)
T ss_pred             ccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHH
Confidence            11223999999999999999999999999999999999999999999999999999999999999999999999988 99


Q ss_pred             Hhhhhcccc-chhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCcccccccccccccchHHHHHHHHHhhccccccCCC
Q 011783          158 YACEIFREE-HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHND  236 (477)
Q Consensus       158 ~i~~~~~~~-~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  236 (477)
                      +++|.+|++ +|++++|+.-.+.++|..+||+.||.+++       ..|-+..|....++...-....+++.|..+.+++
T Consensus       183 mlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe-------~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~  255 (464)
T KOG3764|consen  183 MLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYE-------FAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPD  255 (464)
T ss_pred             HHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHh-------hcCCcCcHHHHHHHHHHHHHHHHheeCccccCcc
Confidence            999999965 58999999999999999999999999999       6676666621111111111122222222111110


Q ss_pred             CCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchh-h
Q 011783          237 DDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQ-M  315 (477)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~  315 (477)
                                            ..++..+.++++++|.++.........+.........+++|..+.     +. ++. +
T Consensus       256 ----------------------~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~-----m~-~p~w~  307 (464)
T KOG3764|consen  256 ----------------------STEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLET-----MF-TPGWE  307 (464)
T ss_pred             ----------------------ccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHh-----cc-CCCcc
Confidence                                  111224678899999988766655555555555556666766654     45 344 7


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHh
Q 011783          316 VGEVLAITGFSLLVFQLSLYPFLERILG--PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIIT  393 (477)
Q Consensus       316 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (477)
                      .|..+....+...++.. +.+.+.||++  |......+.+..+..+...++......  .|+......+.++.......|
T Consensus       308 ~G~~fLp~~~~y~ig~~-lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~--L~vp~~~l~~~i~~~dasl~P  384 (464)
T KOG3764|consen  308 VGLAFLPASLSYAIGTN-LFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQ--LWVPNFGLGFGIGLADASLIP  384 (464)
T ss_pred             eeeeecccccchhccCc-hHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHH--HhhhhHHHHHHHHHHHHHHhh
Confidence            88888888999999988 8899999999  544444555555555555555544222  232333333322333333334


Q ss_pred             HHHHHHhhcCCcc---hhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          394 GLFILQNRAVDQD---QRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       394 ~~~~~~~~~~~~~---~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      .....+.. ...+   .-|.++++......+|.++||.++|.+.+..          |+++...+.++..++-.-+...
T Consensus       385 ~l~~lvd~-rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~i----------GF~wl~~iig~~n~iyapvl~l  452 (464)
T KOG3764|consen  385 TLGYLVDP-RHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAI----------GFEWLMTIIGILNLIYAPVLLL  452 (464)
T ss_pred             hhHHhcch-hhccccceeeeHHHHHHHHHHHhhhccccccchheeeh----------hHHHHHHHHHHHHHHHHHHHHH
Confidence            33332222 2222   5689999999999999999999999999988          8888888888877776554433

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.96  E-value=3.7e-27  Score=231.49  Aligned_cols=399  Identities=12%  Similarity=0.066  Sum_probs=257.2

Q ss_pred             hhchHhHHHHHHHHhcccccchhhh-hhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhhhhH
Q 011783           57 ISSLFPFLYFMIKDFQIAKREEDIG-SYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF  135 (477)
Q Consensus        57 ~~~~~~~~~~~~~~~~~s~~~~~~~-~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~  135 (477)
                      .+...+....+.++...+..+.... ...+++.++..++..+++++.|+++|++|||+.++.+.+.+.++.+++++++|+
T Consensus        63 ~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~  142 (513)
T KOG0254|consen   63 IGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSW  142 (513)
T ss_pred             cccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            4566666666666543222210000 115899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCccccccccccccc
Q 011783          136 WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  214 (477)
Q Consensus       136 ~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~  214 (477)
                      ++++++|+++|+|.|..... +.+++|..|++.||...+..+....+|..++..++....+...+||..++.      ..
T Consensus       143 ~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~------~~  216 (513)
T KOG0254|consen  143 YQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGL------AL  216 (513)
T ss_pred             HHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHH------HH
Confidence            99999999999998887776 999999999999999999999999999999966665554421244433332      22


Q ss_pred             chHHHHHHHHHhhccccccCCCCCCc--cchhhhhhhh--hhccch-----------hhc-ccCCchhhhhhcchhhHHH
Q 011783          215 YFLPCLCISLFAFGETLHRHNDDDDS--CDVSYDALES--ASAEVK-----------EEE-GREATPKKSLLKNWPLMSS  278 (477)
Q Consensus       215 ~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~-----------~~~-~~~~~~~~~~~~~~~~~~~  278 (477)
                      ...+...+..+++||+|++..++.+.  .+.....+..  +++...           +.. .+.+..++++++.......
T Consensus       217 i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  296 (513)
T KOG0254|consen  217 IPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRL  296 (513)
T ss_pred             HHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHH
Confidence            22333344477889999875442222  1111111111  000000           000 1111124444442223333


Q ss_pred             HHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 011783          279 IIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPL  358 (477)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  358 (477)
                      .+...+..+.+.........|..+.  .+..|.+... .......++..+++.. ++..+.||.|||+.+..+...+.++
T Consensus       297 ~i~~~l~~fqq~tG~~~~~~Y~~~i--f~~~g~~~~~-~~~~~~~~~v~~~~t~-~~~~lvd~~gRr~lll~s~~~m~~~  372 (513)
T KOG0254|consen  297 IIGLLLQLFQQLTGINYVFYYSTTI--FKSAGLKSDT-FLASIILGVVNFLGTL-VATYLVDRFGRRKLLLFGAAGMSIC  372 (513)
T ss_pred             HHHHHHHHHHHHhCCceEEeehHHH--HHhcCCCCch-HHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHhHHHHHHH
Confidence            3334443333333322222233222  2334554332 3344444555556655 6689999999999999999999888


Q ss_pred             HHHHHHHHHhhh-------hhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHH
Q 011783          359 LTSYPYIAMLSG-------FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGG  431 (477)
Q Consensus       359 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g  431 (477)
                      .+++........       ...+..+....+....+..+..+..+.+.+|.+|.+.|+++.++....+.+...+-.....
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~  452 (513)
T KOG0254|consen  373 LVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFP  452 (513)
T ss_pred             HHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            877665544321       2234445555555566777778888889999999999999999999999888877766555


Q ss_pred             HHHHHhhhhccccCCCCchHHHHHHHHHHHHHHH-HHhhhhhhccC
Q 011783          432 ALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVL-MTFKPFLAQRH  476 (477)
Q Consensus       432 ~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  476 (477)
                      .+.+..          +....|...+.++.+... ..+. ..||++
T Consensus       453 ~~~~~~----------~~~~~f~~f~~~~~~~~~~fv~~-~~pETk  487 (513)
T KOG0254|consen  453 FITEAL----------GIGGTFGYFGGICLLSLIIFVFF-FVPETK  487 (513)
T ss_pred             HHHHhc----------cccchHHHHHHHHHHHHHHHheE-EcccCC
Confidence            555443          223455555555555555 3333 578776

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.96  E-value=4.7e-26  Score=217.06  Aligned_cols=374  Identities=12%  Similarity=0.016  Sum_probs=251.0

Q ss_pred             HHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHH--HHHHHHHHHHHhhhhhh-hhhhcCCchhhHHHH
Q 011783           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYV--GSSFMFGRALTSVFWGL-VADRYGRKPVIIMGT  119 (477)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~--~s~~~~~~~~~~~~~G~-l~Dr~Grr~~~~~~~  119 (477)
                      +..+...++.+++..+...|.+|.+.+|.|.+.++      +|++  .+...+...+.+|+++. ..||+||||..++..
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~------iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~   76 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTA------LAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPM   76 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHH
Confidence            45667778889999999999999999999999999      9997  46668888888888844 799999999976665


Q ss_pred             HHH-HHHHHHHH---hhhh-HHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHh
Q 011783          120 ASV-VIFNTLFG---LSVN-FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (477)
Q Consensus       120 ~~~-~i~~~~~~---~~~~-~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  193 (477)
                      .+. ++.....+   ...+ ..+++..-++.++..+...+. .++..|..++++++...+....+..+|.++|+...+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l  156 (390)
T TIGR02718        77 QCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVL  156 (390)
T ss_pred             HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            332 22222222   2222 334444555555666666666 78888888888888888888888899999999888888


Q ss_pred             hhccccCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcch
Q 011783          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNW  273 (477)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (477)
                      .+       .++|+..|...........+..+.++|.++.   + ++.+                 ++...+.++.+|+|
T Consensus       157 ~~-------~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~---~-~~~~-----------------~~~~~~~~~~l~~~  208 (390)
T TIGR02718       157 FG-------KFGQRPAFLLVACVPLASLVCVLWLKDRAVA---S-PEAP-----------------LARRASLFRFFRRP  208 (390)
T ss_pred             HH-------HhCHHHHHHHHHHHHHHHHHHHHHcCCCCcC---c-cccc-----------------hhhHHHHHHHHcCc
Confidence            87       5666666521111111112222233322111   0 0000                 00112466788999


Q ss_pred             hhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHH-HHHHHHHHHHHHhhcchhHHHHHH
Q 011783          274 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLL-VFQLSLYPFLERILGPIMVARIAG  352 (477)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~  352 (477)
                      .++......++..........+.+.|+.+      .|+++++.|......+.... ++.. +.+++.||+++++.+..+.
T Consensus       209 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~------~G~s~~~ig~~~~~~~~~~~~~g~~-~~g~l~~r~g~~~~l~~~~  281 (390)
T TIGR02718       209 LAWSLLALALLSAMTAVSGFGLSKLYLVD------AGWPLEWIGRLGMAGGAVTVLLGCG-GGAWLVRRAGLWRTFILGV  281 (390)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhHHHHh------cCCCHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHH
Confidence            88887777777766666666677666654      69999999999888776444 4455 8999999999999888776


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCc-chhhHHhHHHHHHHHHHHHHhhhHHH
Q 011783          353 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQ-DQRGAANGIAMTGMSLFKAAGPAGGG  431 (477)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g  431 (477)
                      .+..+.........................+.++..+...+...+...+..++ +.+++.+++.+...++|..++|.++|
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G  361 (390)
T TIGR02718       282 GLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAG  361 (390)
T ss_pred             HHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65533322222111110000111112222222344455556666666666665 88999999999999999999999999


Q ss_pred             HHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHH
Q 011783          432 ALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT  467 (477)
Q Consensus       432 ~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  467 (477)
                      .++|+.          |++..|...+++.+++.+..
T Consensus       362 ~l~~~~----------G~~~~f~~~~~~~l~a~~~~  387 (390)
T TIGR02718       362 YLTDRF----------GYAGGFLSGTVLAVLAILLA  387 (390)
T ss_pred             HHHHHH----------ccHHHHHHHHHHHHHHHHHh
Confidence            999988          88889988888777765543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.96  E-value=1.4e-27  Score=207.70  Aligned_cols=398  Identities=14%  Similarity=0.077  Sum_probs=267.6

Q ss_pred             CchhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHH
Q 011783           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (477)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~  117 (477)
                      .++............+.+-.-..+-+.|...+.+|.+..+      ..++......+..+++..||.++|++|||+.+..
T Consensus        75 fq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q------~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~  148 (528)
T KOG0253|consen   75 FQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQ------APLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNL  148 (528)
T ss_pred             chhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhh------hhHHHHHHHhhhhhhhhhhheehhhhhcchhhhh
Confidence            3444444555555555555555566677888899988888      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhc
Q 011783          118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (477)
Q Consensus       118 ~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  196 (477)
                      ..+..++...+.+.++|+..+.+.|.+.|+|.|. .|. .++-.|..|..+|...+-.. ..+.+|.++...+.-.+.. 
T Consensus       149 T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~-  225 (528)
T KOG0253|consen  149 TFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMS-  225 (528)
T ss_pred             hHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHH-
Confidence            9999999999999999999999999999999888 666 88899999999999887777 8999999999999988777 


Q ss_pred             cccCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhh--hhhh---------------------hhhc
Q 011783          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSY--DALE---------------------SASA  253 (477)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~---------------------~~~~  253 (477)
                            .+|||+.+......+..+....+++||+++..-.+.++.+...  +++.                     ++..
T Consensus       226 ------~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~  299 (528)
T KOG0253|consen  226 ------NFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEES  299 (528)
T ss_pred             ------hhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhh
Confidence                  4566665522222344455666789999987544333222211  1110                     0000


Q ss_pred             cchh----hcccCCchhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCcccc-----------------c
Q 011783          254 EVKE----EEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNY-----------------S  312 (477)
Q Consensus       254 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----------------~  312 (477)
                      +.++    ..++...+..+++..+..+..++.++.++...+.++...-.-....+.....+.                 +
T Consensus       300 ~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s  379 (528)
T KOG0253|consen  300 DLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLS  379 (528)
T ss_pred             chhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCcc
Confidence            0000    112233445556654444445555555544444443322211111000010111                 1


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHH
Q 011783          313 TQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSII  392 (477)
Q Consensus       313 ~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (477)
                      ..+--.-..+..+....|.+ +.+++.||+|||+.+...+++.+++.+.+.......      ...+..+..-++..+.+
T Consensus       380 ~~~dYrdllitslaefPGlL-It~~iverlGRKkTMal~l~~f~iflfll~~c~~rn------~~tvllf~arafisg~f  452 (528)
T KOG0253|consen  380 VAKDYRDLLITSLAEFPGLL-ITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRN------AYTVLLFTARAFISGAF  452 (528)
T ss_pred             chhHHHHHHHHHHhhCCchh-HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcc------hhHHHHHHHHHHHhchh
Confidence            11111123344566666766 899999999999999999998888877665544322      12222233345667778


Q ss_pred             hHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          393 TGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       393 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      ...|.|..|++|...|+++.|..+.+..+|+++.|.++ ...+.           ....+..+.+.+++++.++..+
T Consensus       453 qvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~-----------s~sl~i~vy~~~~ilagIavcf  517 (528)
T KOG0253|consen  453 QVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAEL-----------STSLPIFVYGALFILAGIAVCF  517 (528)
T ss_pred             eEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhcc-----------ceeehHHHHHHHHHHHHHHhee
Confidence            88899999999999999999999999999999999988 22222           2234555666666666665544

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.96  E-value=1.7e-27  Score=226.00  Aligned_cols=284  Identities=17%  Similarity=0.114  Sum_probs=218.7

Q ss_pred             HHHHHHHHhhhchhchH-hHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHH
Q 011783           45 SIWIIVLCTALPISSLF-PFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (477)
Q Consensus        45 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~  123 (477)
                      .++...+..+.+...++ +.+-.+.+|.+....+      .+.+.+++.++++++++++|.+.||++-.+.+....++++
T Consensus        49 ~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~------l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~  122 (495)
T KOG2533|consen   49 FLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQ------LGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWG  122 (495)
T ss_pred             HHHHHHHHHhcchhcchhHHHcCCccccchhhhh------hhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHH
Confidence            34445555555554433 3344566899999999      9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCc
Q 011783          124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN  202 (477)
Q Consensus       124 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~  202 (477)
                      +..++.....|++.+++.|++.|+.++...|. ..+++.|+.++||++.++++.+..++|.++|.+++..+.+ ..+-..
T Consensus       123 ~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~-~~~~~~  201 (495)
T KOG2533|consen  123 LFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFK-LNGSGG  201 (495)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhh-hcCCCC
Confidence            99988888999999999999999999999998 9999999999999999999999999999999999988765 222223


Q ss_pred             cccccccccccc-chHHHHHHHHHhhccccccCCCCCCccch-hhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHH
Q 011783          203 LFSSESLFGKFP-YFLPCLCISLFAFGETLHRHNDDDDSCDV-SYDALESASAEVKEEEGREATPKKSLLKNWPLMSSII  280 (477)
Q Consensus       203 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (477)
                      ..+||+.|.... ..++..++..+++|+.|...+-.+++++. ..++.++......+++ .....+++.+++|.+|...+
T Consensus       202 ~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~dp~vw~~~l  280 (495)
T KOG2533|consen  202 LAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENK-FKWKGFKEALKDPGVWPFSL  280 (495)
T ss_pred             cCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccc-cCHHHHHHHHhchhHHHHHH
Confidence            566666663111 12333444556777776643222211111 1111111111111111 45567889999999999999


Q ss_pred             HHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011783          281 VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL  342 (477)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~  342 (477)
                      ..++......++..+.|+|+.+.     .|++..++..+..+..++++++.+ +.+.++||.
T Consensus       281 ~~~~~~lv~~~~~~~lpl~l~~~-----~~~s~~~a~~ls~~~~~~g~v~~i-~ag~lsdr~  336 (495)
T KOG2533|consen  281 CYFFLKLVNYGFSYWLPLYLKSN-----GGYSELQANLLSTPYDVGGIVGLI-LAGYLSDRL  336 (495)
T ss_pred             HHHHHhhccccHHHHHHHHHHcC-----CCcChHHhccccchHHhhhHHHHH-HHHHHHHHH
Confidence            99999999999999999998862     679999999999999999999988 999999994

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.96  E-value=5.3e-28  Score=240.45  Aligned_cols=382  Identities=16%  Similarity=0.123  Sum_probs=267.3

Q ss_pred             HHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHH
Q 011783           44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (477)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~  123 (477)
                      ....+..+...+..+...+.++.+.++|+++..+      .|++.+.+.++++++.++.|+++||+|||+.+.++.++++
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~------~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~  109 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSS------SGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMG  109 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCc------ceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHH
Confidence            3444466667777788889999999999999999      9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhh---------------------------------------------------hHHHHHHHHHHhhhcccch
Q 011783          124 IFNTLFGLSV---------------------------------------------------NFWMAVLTRFLLGSLNGLL  152 (477)
Q Consensus       124 i~~~~~~~~~---------------------------------------------------~~~~l~~~r~l~G~~~g~~  152 (477)
                      ++++++++.+                                                   .+..++++|+++|+|.+..
T Consensus       110 lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~  189 (633)
T TIGR00805       110 LGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPI  189 (633)
T ss_pred             HHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcc
Confidence            9999998763                                                   2567789999999999998


Q ss_pred             hhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccC---------------Ccccccccccccccch
Q 011783          153 GPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY---------------PNLFSSESLFGKFPYF  216 (477)
Q Consensus       153 ~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~---------------~~~~~~~~~~~~~~~~  216 (477)
                      .+. .+++.|++|+++|++.+++++.+..+|.++|+++++++.+...+|               ||.-.|+..|......
T Consensus       190 ~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l  269 (633)
T TIGR00805       190 FPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGV  269 (633)
T ss_pred             hhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHH
Confidence            888 999999999999999999999999999999999999988643333               4433455544211111


Q ss_pred             HHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccc-h---hhcccCCchhhhhhcchhhHHHHHHHHHHHhhhhhh
Q 011783          217 LPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEV-K---EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAY  292 (477)
Q Consensus       217 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (477)
                      ..+..+.++.+|+..+....+.+......+..+....+. .   +...+.....+.+++||.++...+..++.......+
T Consensus       270 ~~l~~v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~  349 (633)
T TIGR00805       270 ALLTSIPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGY  349 (633)
T ss_pred             HHHHHHHHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence            222223344555543321110000000000000000000 0   001112345678999999999999988888888889


Q ss_pred             HHHHHHhhcCcccCCccccchhhhHHHHHHHHH-HHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHHHHH---H-
Q 011783          293 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGF-SLLVFQLSLYPFLERILG--PIMVARIAGVLTIPLLTSYPY---I-  365 (477)
Q Consensus       293 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~---~-  365 (477)
                      ..+.|.|++..     +|+++.+++++.....+ +.+++.+ +++++.||++  .++.+..+..+..+..+....   . 
T Consensus       350 ~~~lP~yl~~~-----~g~s~~~ag~l~~~~~i~~~~vG~~-l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (633)
T TIGR00805       350 ITFLPKYLENQ-----YGISSAEANFLIGVVNLPAAGLGYL-IGGFIMKKFKLNVKKAAYFAICLSTLSYLLCSPLFLIG  423 (633)
T ss_pred             HHHHHHHHHHH-----cCCcHHHHHHHhhhhhhhHHHHHHh-hhhheeeeecccHHHHHHHHHHHHHHHHHHHHHHHeec
Confidence            99999998765     89999999999888776 4456666 8999999988  456666666655555433210   0 


Q ss_pred             ----------------------HH---------hh---------------------------------------------
Q 011783          366 ----------------------AM---------LS---------------------------------------------  369 (477)
Q Consensus       366 ----------------------~~---------~~---------------------------------------------  369 (477)
                                            ..         ..                                             
T Consensus       424 C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~~y~~CsCi~~~~~~  503 (633)
T TIGR00805       424 CESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNMVYTNCSCVQTPGNS  503 (633)
T ss_pred             CCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcceecccccccCCCCC
Confidence                                  00         00                                             


Q ss_pred             ----hh------hHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHH-HHHHHHHhhhHHHHHHHHh
Q 011783          370 ----GF------GLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTG-MSLFKAAGPAGGGALFSWA  437 (477)
Q Consensus       370 ----~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~~g~~~~~~~~g~l~~~~  437 (477)
                          +.      .....+++..++..+............+.+.+|+++|.-+.|+...+ +-+|.+-+|.+.|.+.|..
T Consensus       504 ~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~iD~s  582 (633)
T TIGR00805       504 SAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLLIDVS  582 (633)
T ss_pred             CCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCcccchHHhhHHHHHHHHhcCCChhHHHhhhhhch
Confidence                00      01122222223223333333444455667789999999999999875 5678899999999999964

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.96  E-value=1.1e-26  Score=218.78  Aligned_cols=331  Identities=11%  Similarity=0.152  Sum_probs=227.2

Q ss_pred             hhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhc-----CCchh-hHHHHHHHHHHHHHHH
Q 011783           57 ISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKPV-IIMGTASVVIFNTLFG  130 (477)
Q Consensus        57 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-----Grr~~-~~~~~~~~~i~~~~~~  130 (477)
                      .....+.+|.+.+|+|.|.++      +|++.+. .+...+ .+++|+++||+     ||||. ++.+.++.++.....+
T Consensus         4 ~~~~~~~~~~~~~~~g~s~~~------~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~   75 (356)
T TIGR00901         4 LGLVGNTLPYWLRSKNVSLKT------IGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILS   75 (356)
T ss_pred             chhHHhHHHHHHHHcCCCHHH------HHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            456778899999999999999      9999766 555555 99999999998     89997 5677788887777777


Q ss_pred             hh---hhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhcccc-CCcccc
Q 011783          131 LS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK-YPNLFS  205 (477)
Q Consensus       131 ~~---~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~-~~~~~~  205 (477)
                      +.   .+.+.+....++.+++.+...+. .+++.|++|+|+|+++.++...+..+|.++++.+++.+.+.... .....+
T Consensus        76 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~  155 (356)
T TIGR00901        76 FLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITL  155 (356)
T ss_pred             cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence            76   46667777788888888887777 99999999999999999999999999999999999988873211 000112


Q ss_pred             cccccccccchHHHHHHHHH-hhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchh---hHHHHHH
Q 011783          206 SESLFGKFPYFLPCLCISLF-AFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP---LMSSIIV  281 (477)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  281 (477)
                      ||..|..........+...+ ..+|..+.   ++++ ++.              +.+.....+++++++.   ++...+.
T Consensus       156 wr~~f~i~ai~~l~~~~~~~~~~~e~~~~---~~~~-~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (356)
T TIGR00901       156 WGYIFFWTALLILPGLLVTLFLAKEPQED---ASVP-KPL--------------TQAVLKPIREFFQRKNMIQALLLLLL  217 (356)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhccCCCcc---cccc-hhH--------------HHHHHHHHHHHHHhcCchHHHHHHHH
Confidence            55555211111111111111 22332111   0000 000              0011124556677765   6655555


Q ss_pred             HHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHH-HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 011783          282 YCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGF-SLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLT  360 (477)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  360 (477)
                      .++..........+.+.|+.+      +|+++.+.+.+....+. ..+++.+ +++++.||+|+|+.+..+.++..+...
T Consensus       218 ~~~~~~~~~~~~~~~~~~l~~------~g~~~~~~g~~~~~~~~~~~~~g~~-~~g~l~~r~g~~~~l~~~~~~~~~~~~  290 (356)
T TIGR00901       218 IVLYKLGDSAATVLTTLFLLD------MGFSKEEIALVAKINGLLGAILGGL-IGGIIMQPLNILYALLLFGIVQALTNA  290 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHhHHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            555565566666777777654      68999999988887774 5566665 899999999999998888877776655


Q ss_pred             HHHHHHHhhh-----hhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHH
Q 011783          361 SYPYIAMLSG-----FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMS  420 (477)
Q Consensus       361 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  420 (477)
                      .+.+......     ......+....++.+++.+...+...++.++.+|+++||+.+|+.++..+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       291 GFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            5444321110     01112334444555677788899999999999999999999999887654

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.96  E-value=1.4e-26  Score=222.19  Aligned_cols=396  Identities=16%  Similarity=0.150  Sum_probs=284.3

Q ss_pred             CchhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHH
Q 011783           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (477)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~  117 (477)
                      +.|-.....++......-....++.+.+.++++++.+.++      ++|+.++....+.+..|+.+.+.||+|.|.+.+.
T Consensus        43 ~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~------~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~  116 (509)
T KOG2504|consen   43 WGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQ------IAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIA  116 (509)
T ss_pred             eeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccH------HHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHH
Confidence            3444444444444444444456667889999999999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHH-HHhhhcccchh-hHHHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhh
Q 011783          118 GTASVVIFNTLFGLSVNFWMAVLTR-FLLGSLNGLLG-PIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (477)
Q Consensus       118 ~~~~~~i~~~~~~~~~~~~~l~~~r-~l~G~~~g~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (477)
                      |.++.+++.++.++++++|++++.. ++.|+|.|+.. |+..++..+|+ ++|+.+.|+...+.++|.++-|.+..++.+
T Consensus       117 G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~  195 (509)
T KOG2504|consen  117 GGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLS  195 (509)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHH
Confidence            9999999999999999999988876 88899988855 45888887775 889999999999999999999999999998


Q ss_pred             ccccCCcccccccccccccch-HHHHHHHHHhhccccccCCC---------------------CCCccchhhhh-----h
Q 011783          196 PAEKYPNLFSSESLFGKFPYF-LPCLCISLFAFGETLHRHND---------------------DDDSCDVSYDA-----L  248 (477)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~---------------------~~~~~~~~~~~-----~  248 (477)
                             .+|||..+...... +-.++.....-|..+..++.                     +..+.+....+     .
T Consensus       196 -------~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (509)
T KOG2504|consen  196 -------KYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNL  268 (509)
T ss_pred             -------HhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccch
Confidence                   56666554211111 12222222333322221111                     00000000000     0


Q ss_pred             hhhhccchhhc-ccCCch----hhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHH
Q 011783          249 ESASAEVKEEE-GREATP----KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAIT  323 (477)
Q Consensus       249 ~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~  323 (477)
                      ....+..++.+ ...+..    ..++++++.++...+...+..........+++.|..+      .+++..+++.++++.
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~------~g~~~~~aa~l~Sii  342 (509)
T KOG2504|consen  269 ATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKS------LGLSSNDAAFLLSII  342 (509)
T ss_pred             hhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh------cCCChhhhHHHHHHH
Confidence            00000000000 011112    2578899999988888888877777777777777764      899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhh
Q 011783          324 GFSLLVFQLSLYPFLERILGP--IMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNR  401 (477)
Q Consensus       324 ~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (477)
                      ++..+++++ +.|++.|+...  +.....+.+..++.....++...      ...+.....+.++..+.........+.+
T Consensus       343 gi~~i~gRi-~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~------~~~l~~~~~~fG~~~g~~~~l~~~i~~~  415 (509)
T KOG2504|consen  343 GVSDIIGRI-ILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATT------YVGLIVFSILFGFCVGSFSSLTPVILVD  415 (509)
T ss_pred             HHhhhhhhh-hhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999 99999999773  33444444444444444444333      2344555555566767777777778899


Q ss_pred             cCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          402 AVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       402 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      .++.++-..+.|+...+..++..+||.++|.+.|..+         +|...|++++++.+++..+.+.
T Consensus       416 ~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg---------~Y~~~f~~~g~~~~~s~~~~~~  474 (509)
T KOG2504|consen  416 LVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG---------NYDHAFYFCGLCFLLSAVLLLI  474 (509)
T ss_pred             HcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC---------CeeeehhhcChHHHHHHHHHHH
Confidence            9999999999999999999999999999999998872         3778999998888888765544

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.96  E-value=2.3e-25  Score=194.88  Aligned_cols=354  Identities=16%  Similarity=0.108  Sum_probs=282.6

Q ss_pred             chhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhhhhH
Q 011783           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF  135 (477)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~  135 (477)
                      ..+.+.|.++++.+|+|.|.+.      .|++.+...+...+.+++..+++.|+|.++.+..++++.+++.++-... +.
T Consensus        27 ~itsvgPLL~~Ir~~~gls~s~------aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~   99 (395)
T COG2807          27 AITSVGPLLDEIRQDLGLSFSV------AGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GL   99 (395)
T ss_pred             hhhhhhhhHHHHHHHhcccHHH------HHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cH
Confidence            4567889999999999999999      9999999999999999999999999999999999999999999998877 77


Q ss_pred             HHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCccccccccccccc
Q 011783          136 WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  214 (477)
Q Consensus       136 ~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~  214 (477)
                      +.++..-.+.|.+.+...+. +++|-+.+| |+-+..+|+|....++|..+++.+...+.++..+||....+      + 
T Consensus       100 ~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~------W-  171 (395)
T COG2807         100 PLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGF------W-  171 (395)
T ss_pred             HHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHH------H-
Confidence            88899999999999999888 999999998 67899999999999999999999999999865455544332      1 


Q ss_pred             chHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHHHHHHHHhhhhhhHH
Q 011783          215 YFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSE  294 (477)
Q Consensus       215 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (477)
                       .+...+..+.++|...+.+...                     .+....+..+++|+|.-|...+.+.+.+...++...
T Consensus       172 -Al~allAl~~WlPq~~r~~~~~---------------------~~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~  229 (395)
T COG2807         172 -ALLALLALLIWLPQALREQAAS---------------------IATKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIG  229 (395)
T ss_pred             -HHHHHHHHHHHhhhcccccccc---------------------cccccccccccccCchhHHHHHHHHhhHHHHHHHHH
Confidence             2334455566777653222111                     111112345688999999999999999999999999


Q ss_pred             HHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 011783          295 IFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-GPIMVARIAGVLTIPLLTSYPYIAMLSGFGL  373 (477)
Q Consensus       295 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (477)
                      ++|.++.+      .|+|+.+.|.+.+...+..+..++ ..+.+.+|. ++|+.......++.++.+.+.+.+.. ....
T Consensus       230 WLP~ili~------~G~sa~~aG~llsl~~l~~~~~~l-l~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~-~~~l  301 (395)
T COG2807         230 WLPAILID------RGLSAAEAGSLLSLMQLAQLPTAL-LIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQ-LPIL  301 (395)
T ss_pred             HHHHHHHH------cCCCHHHhhhHHHHHHHHHHHHHH-HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhh-HHHH
Confidence            99988876      799999999999999999999998 888888864 56777777777777777766655432 2222


Q ss_pred             HHHHHHHHHHHhhhhHHHHhHHHHHHhh-cCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHH
Q 011783          374 AFLLNCASVVKNLLSVSIITGLFILQNR-AVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMV  452 (477)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~  452 (477)
                      |      .++.|++.++.++.....+.. .-+++..++-.|+.+.++++-.+.||.+.|++.|.+         ++|+..
T Consensus       302 w------~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~---------gsw~~~  366 (395)
T COG2807         302 W------ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT---------GSWSAP  366 (395)
T ss_pred             H------HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc---------CChHHH
Confidence            2      234466777888877776655 445678888999999999999999999999999998         367777


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 011783          453 FFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       453 ~~~~~~~~~~~~~~~~~  469 (477)
                      +...+...+...+.-+.
T Consensus       367 ~~~l~~~~i~m~i~Gl~  383 (395)
T COG2807         367 LVLLALATLLMLIFGLR  383 (395)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            77777666666555443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.95  E-value=1.3e-25  Score=215.42  Aligned_cols=362  Identities=14%  Similarity=0.146  Sum_probs=245.8

Q ss_pred             hhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhh
Q 011783           53 TALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS  132 (477)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~  132 (477)
                      .++........++.+.+|+|-++.       ..|+.+++.++.++..++.|+++|.||||.+++.+.++..++.++++.+
T Consensus        56 ~~~~~~~~a~~l~~I~~diG~~~~-------~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA  128 (599)
T PF06609_consen   56 AYFVLVLPASILPYINADIGGSDN-------WSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA  128 (599)
T ss_pred             HHHHHhccHHHHHHHHHhcCCCcc-------chHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC
Confidence            344555556778899999998765       5999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhhcccchhhHHHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCccccccccccc
Q 011783          133 VNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGK  212 (477)
Q Consensus       133 ~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~  212 (477)
                      +|...++++-.+.|+|.|........++|..|.|.|....++...........+|.++..+.. ..+|||.|+...++  
T Consensus       129 ~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~-~~~WRw~~~~~~i~--  205 (599)
T PF06609_consen  129 QNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA-HSGWRWIFYIFIIW--  205 (599)
T ss_pred             CcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc-CCCcchHHHHHHHH--
Confidence            999999999999999988877666679999999999988887776666666677888776654 46888888655443  


Q ss_pred             ccchHHHHHHHHHhhccccccCCCCCCccchhhhhhh-------------------------hhhccch-----------
Q 011783          213 FPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALE-------------------------SASAEVK-----------  256 (477)
Q Consensus       213 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~-----------  256 (477)
                        ..+.+....++..|.+++..+.++...++..++++                         ..+++.+           
T Consensus       206 --~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~  283 (599)
T PF06609_consen  206 --SGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVL  283 (599)
T ss_pred             --HHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHH
Confidence              11222222333334332221111111111111111                         0111111           


Q ss_pred             -------hh--cccCCchhhhhhcc-hhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccch---hhhHHHHHHH
Q 011783          257 -------EE--EGREATPKKSLLKN-WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYST---QMVGEVLAIT  323 (477)
Q Consensus       257 -------~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~g~~~~~~  323 (477)
                             |.  ..+++....+++|+ |.+...++..++....+++...++|......     ++-++   ...+......
T Consensus       284 Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~v-----f~~d~~~~~~~~~~s~~~  358 (599)
T PF06609_consen  284 LVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNV-----FGSDPISITEIGWISSPV  358 (599)
T ss_pred             HHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----ccCCCcccceeehhhhhH
Confidence                   11  12355667788887 5555555666666666666666777665544     33333   2467777778


Q ss_pred             HHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhc
Q 011783          324 GFSLLVFQLSLYPFLERILGPI-MVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRA  402 (477)
Q Consensus       324 ~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (477)
                      +++..+++. +.+.+.++.++. +.+..+.+++.+++..+......+.. ..+   ...++.+++.+..........+-.
T Consensus       359 ~fg~~~g~~-i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~-~~i---~~~~l~g~giG~~~~~~~~~~ql~  433 (599)
T PF06609_consen  359 GFGSCAGAV-ILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKN-AAI---AFLVLAGFGIGGILVPAIVIAQLI  433 (599)
T ss_pred             HHHHHHHHH-HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcc-hHH---HHHHHHHHhHHHHHHHHHHeeEee
Confidence            888888877 667777777754 44456665555554544444332222 222   222333455566666667777788


Q ss_pred             CCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHH
Q 011783          403 VDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSW  436 (477)
Q Consensus       403 ~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  436 (477)
                      +|++..|++.|+..+++.+|+.+|..+...++..
T Consensus       434 ~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n  467 (599)
T PF06609_consen  434 VPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTN  467 (599)
T ss_pred             eCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            9999999999999999999999999988777754

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.95  E-value=6.5e-26  Score=219.90  Aligned_cols=350  Identities=14%  Similarity=0.082  Sum_probs=235.6

Q ss_pred             hhhchhchHhHH-HHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhh----cCCch-hhHHHHHHHHHHH
Q 011783           53 TALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKP-VIIMGTASVVIFN  126 (477)
Q Consensus        53 ~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr----~Grr~-~~~~~~~~~~i~~  126 (477)
                      ..+......+.+ +.+.+++|.++.+      +|++.++..+..++..|+.|+++||    +|||| .++.+....+++.
T Consensus        11 ~~~~~~~~~~~l~~~~~~~~g~s~~~------~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~   84 (437)
T TIGR00792        11 NNFIFAIVSTYLLFFYTDVLGLSAAF------VGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVL   84 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHH
Confidence            334445555545 4677789999999      9999999999999999999999998    67754 5777888888888


Q ss_pred             HHHHhhhh------HHHHHHHHHHhhhcccchhhH-HHHhhhhc-cccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccc
Q 011783          127 TLFGLSVN------FWMAVLTRFLLGSLNGLLGPI-KAYACEIF-REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (477)
Q Consensus       127 ~~~~~~~~------~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  198 (477)
                      +++...++      +..+++.+++.+++.+...+. .++..|.. +++||++..++.+.+..+|..+++.+.+.+.....
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~  164 (437)
T TIGR00792        85 VLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFG  164 (437)
T ss_pred             HHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            87776653      567778888888887776555 88888887 47899999999999999998888777666654221


Q ss_pred             cCCcccccccccccccchH-HHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHH
Q 011783          199 KYPNLFSSESLFGKFPYFL-PCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMS  277 (477)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (477)
                      +.....+|+..+....... +.........+|.++..   +++.+               ++.+..+..++++++|.++.
T Consensus       165 ~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~---~~~~~---------------~~~~~~~~~~~l~~~~~~~~  226 (437)
T TIGR00792       165 GGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEI---PKNIE---------------KKLSLKQIFKALFKNDQLLI  226 (437)
T ss_pred             CCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCC---Ccccc---------------cCCCHHHHHHHHhCCHHHHH
Confidence            1111345554441111011 11111112233322100   00000               01112235677889999988


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 011783          278 SIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIP  357 (477)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  357 (477)
                      .++..++..........+.+.|....     .+ ++.+.+.+.....++.+++.+ +.+++.||+|+|+.+..+..+..+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~i~~ii~~~-~~~~l~~r~g~~~~~~~~~~~~~~  299 (437)
T TIGR00792       227 LCLAYLFYNLAFNIKNGVQVYYFTYV-----LG-DPELFSYMGSIAIVAGLIGVL-LFPRLVKKFGRKILFAGGILLMVL  299 (437)
T ss_pred             HHHHHHHHHHHHHHHcchhheeEeee-----cC-ChHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCcHHHHHHHHHHHHH
Confidence            77777766655544444444443322     33 455667777777888888887 889999999999999888877777


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCC-------cchhhHHhHHHHHHHHHHHHHhhhHH
Q 011783          358 LLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVD-------QDQRGAANGIAMTGMSLFKAAGPAGG  430 (477)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~g~~~~~~~~  430 (477)
                      +.+.+.+...  +   .....+...+.+++.+...+...++.+|..|       ++.+|++.|+.+....+|..+++.+.
T Consensus       300 ~~~~~~~~~~--~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~  374 (437)
T TIGR00792       300 GYLIFFFAGS--N---LPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLV  374 (437)
T ss_pred             HHHHHHHcch--h---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            6665544321  1   1122233344456666677777888887765       56689999999999999999999999


Q ss_pred             HHHHHHhh
Q 011783          431 GALFSWAQ  438 (477)
Q Consensus       431 g~l~~~~~  438 (477)
                      |.+.+..+
T Consensus       375 g~ll~~~G  382 (437)
T TIGR00792       375 GLILGIIG  382 (437)
T ss_pred             HHHHHHcC
Confidence            99998763

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.95  E-value=8.8e-29  Score=221.80  Aligned_cols=420  Identities=14%  Similarity=0.066  Sum_probs=262.7

Q ss_pred             HHHHHHHHHHHhhhchhchHhHHHHHHHHhc-cccc-chhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHH
Q 011783           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQ-IAKR-EEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (477)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~-~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~  119 (477)
                      .+.+..++.+.+..+...++.+.|.+...+. .+.. ....+...+.+..+..+|.++||++.|+++||+|||+++...+
T Consensus        42 ~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~l  121 (538)
T KOG0252|consen   42 AIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKEL  121 (538)
T ss_pred             HHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHH
Confidence            3445556677888888888888887776653 2211 1112223788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhh-------hHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHH
Q 011783          120 ASVVIFNTLFGLSV-------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG  191 (477)
Q Consensus       120 ~~~~i~~~~~~~~~-------~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  191 (477)
                      ++..+++++++++.       -.+++...|++.|+|.|..+|. .++.+|...++.||...+..-+..+.|...|.+++-
T Consensus       122 iImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~  201 (538)
T KOG0252|consen  122 IIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVAL  201 (538)
T ss_pred             HHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHH
Confidence            99999999887742       3688999999999999999998 888899999999999999998888888888887776


Q ss_pred             Hhhhcc---ccC-----CcccccccccccccchHHHHHHHHHhhccccccCCCCCCcc----chhhhhhhh----hhccc
Q 011783          192 FLAQPA---EKY-----PNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSC----DVSYDALES----ASAEV  255 (477)
Q Consensus       192 ~l~~~~---~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~----~~~~~  255 (477)
                      .+....   -+-     +.-.-||..++...+..+.....-+.+||+.+......++.    ++..+....    +.+..
T Consensus       202 Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~  281 (538)
T KOG0252|consen  202 IVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAE  281 (538)
T ss_pred             HHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccc
Confidence            654311   111     11123444442111112222222234567766541111110    000011111    00000


Q ss_pred             h--hhcccCCchhhhhhcch---hhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHH--------HHHH
Q 011783          256 K--EEEGREATPKKSLLKNW---PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGE--------VLAI  322 (477)
Q Consensus       256 ~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~--------~~~~  322 (477)
                      .  ...++....+...+..+   .+......+++.-.+.+....+.....      +..|+.+.+...        ...+
T Consensus       282 ~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~------~~ig~~~~~~~~~~~~~vA~~~~i  355 (538)
T KOG0252|consen  282 SDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIF------SAIGVIPSANTYHELFKVAEGNLI  355 (538)
T ss_pred             cCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHH------HhhccCCCcchHHHHHHHHHHHHH
Confidence            0  00111111122233233   233334444444443333333322222      224444443322        2222


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhh
Q 011783          323 TGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAML-SGFGLAFLLNCASVVKNLLSVSIITGLFILQNR  401 (477)
Q Consensus       323 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (477)
                      ..+++.+-..++...+.|++||++....++.++.+..+.+....+. .+.....+...  +...++..+.......+.+|
T Consensus       356 ia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~--l~~ff~NFGPn~ttfivpaE  433 (538)
T KOG0252|consen  356 IAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYS--LTFFFGNFGPNATTFIVPAE  433 (538)
T ss_pred             HHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHH--HHHHHHhcCCCceeEEeehh
Confidence            2233333223356677999999999999999999888777665441 11122222222  22224455555666678899


Q ss_pred             cCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhhhhhhccC
Q 011783          402 AVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRH  476 (477)
Q Consensus       402 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (477)
                      .+|.+.|++..|+....+..|++++....+++.++.     .++..+.+.++++.+.+++++.+..++  .||++
T Consensus       434 ~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~-----yp~~~g~~~v~~i~~~~~~~gi~~T~l--~pEtk  501 (538)
T KOG0252|consen  434 IFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHN-----YPPNIGVRNVFIILAGCMLLGILFTLL--IPETK  501 (538)
T ss_pred             hchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhcc-----CCccccchHHHHHHHHHHHHhHheeEE--eeccc
Confidence            999999999999999999999999999988887732     111128899999999999999998877  66654

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.95  E-value=2.6e-24  Score=201.87  Aligned_cols=389  Identities=16%  Similarity=0.204  Sum_probs=277.8

Q ss_pred             HHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcC-CchhhHHHHHHHHH
Q 011783           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-RKPVIIMGTASVVI  124 (477)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~G-rr~~~~~~~~~~~i  124 (477)
                      +....++.++..+...|.++.+.++.|.|..|      +|.+.+...+...+.++++|.++||++ +||++.+..++.++
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~~~G~s~~q------IG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~   80 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQ------IGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSAL   80 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Confidence            45566777788888999999999999999999      999999999999999999999999986 57888888888888


Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHH-HHhhhccccCCc
Q 011783          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG-GFLAQPAEKYPN  202 (477)
Q Consensus       125 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~-~~l~~~~~~~~~  202 (477)
                      ........++++.+++.-++..+......|. .++..+...  ++++-.|......++|.+++.... +.+.... ++. 
T Consensus        81 ~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~-~~~-  156 (400)
T PF03825_consen   81 ALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYL-GIS-  156 (400)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhh-ccc-
Confidence            7777778889999888888888877777776 777777664  566777888888888888876542 3333211 111 


Q ss_pred             ccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHHHH
Q 011783          203 LFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVY  282 (477)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (477)
                        .....+..............+.+|+.+++++.+++.                  +++...+..+++|+|++...++..
T Consensus       157 --~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~~~~~~~------------------~~~~~~~~~~llk~~~~~~Fll~~  216 (400)
T PF03825_consen  157 --GTSLIFYIAAILSLLLAGFALFLPKTPPKRSAKESV------------------KKLLGLDALKLLKNPRFLVFLLAA  216 (400)
T ss_pred             --cccHHHHHHHHHHHHHHHHHHhCCCCccccccCCCc------------------ccccchHHHHHhcCccHHHHHHHH
Confidence              000011000001111112234556655222211111                  111223446799999999988888


Q ss_pred             HHHHhhhhhhHHHHHHhhcCcccCCccc-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 011783          283 CVFSLHDMAYSEIFSLWANSPKKLGGLN-YSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTS  361 (477)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  361 (477)
                      ++.......++.+.+.|+.+      .| .+....+..+++..+..++.-. ..+++.+|+|.++++.++.+..++=..+
T Consensus       217 ~l~~~~~~~~~~f~~~yl~~------~gg~~~~~~g~~~~l~~~aEi~~f~-~~~~~~~r~g~~~ll~~a~~~~~vR~~l  289 (400)
T PF03825_consen  217 FLIGISHAAYYTFFSIYLQE------LGGYSGSTIGILWALGVVAEIPFFF-FSGRFLKRFGIKWLLLLALVAYAVRWLL  289 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHH------cccchhhHHHHHHHHHHHHHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888876      45 6777788888888888888866 8899999999999999999888888877


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHH-HHHHHHHhhhHHHHHHHHhhhh
Q 011783          362 YPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTG-MSLFKAAGPAGGGALFSWAQKR  440 (477)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~~g~~~~~~~~g~l~~~~~~~  440 (477)
                      +....+. ....+........+.+...+........++.+.+|++.|++++++++.. ..+|..+|..++|+++|+.+..
T Consensus       290 ~a~~~~~-~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~  368 (400)
T PF03825_consen  290 YAYFSDP-WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGAR  368 (400)
T ss_pred             HHHhcCC-cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch
Confidence            7665321 1111222333345678888888999999999999999999999999886 4799999999999999987433


Q ss_pred             ccccCCCCchHHHHHHHHHHHHHHHHHhhhhhhccCC
Q 011783          441 LDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRHD  477 (477)
Q Consensus       441 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (477)
                      ...    .+...+.+.+++.++..++... ..||++|
T Consensus       369 ~~~----~~~~~~~v~a~~~~~~~~~f~~-~fk~~~~  400 (400)
T PF03825_consen  369 GMF----DWSAVFLVFAVMALVILVLFVI-LFKPKHN  400 (400)
T ss_pred             hhh----hHHHHHHHHHHHHHHHHHHHHh-hccCCCC
Confidence            211    3445666666666666666555 3555543

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.94  E-value=7.3e-25  Score=216.62  Aligned_cols=338  Identities=16%  Similarity=0.123  Sum_probs=230.5

Q ss_pred             HHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 011783           68 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS  147 (477)
Q Consensus        68 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~  147 (477)
                      .+.++.+...      ..+..+++.+|..+|++++|+++||+|||++++.++++..++.++.++++|++.+++.|+++|+
T Consensus       110 ~~~~c~~~~~------~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~  183 (521)
T KOG0255|consen  110 WNLVCDSSTL------VALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGF  183 (521)
T ss_pred             hceeeCcHhH------HHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence            4555666666      8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCcccccccccccccchHHHHHHHHHh
Q 011783          148 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  226 (477)
Q Consensus       148 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (477)
                      +.+..... ..+++|++++++|+.+..+ ......++.++++.++++..   +||+.++...+.      ....++..+.
T Consensus       184 ~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~---~Wr~~~~~~~~~------~~~~~~~~~l  253 (521)
T KOG0255|consen  184 FGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR---DWRWLFWIISIP------SGLFLLLWFL  253 (521)
T ss_pred             hccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHH------HHHHHHHHHc
Confidence            97776666 9999999999999999999 88888888888888888876   677766654333      2222222444


Q ss_pred             hccccccCCCCCCcc--chhhhhhhhh----hcc--------c-h---hhcccCCchhhhhhcchhhHHHHHHHHHHHhh
Q 011783          227 FGETLHRHNDDDDSC--DVSYDALESA----SAE--------V-K---EEEGREATPKKSLLKNWPLMSSIIVYCVFSLH  288 (477)
Q Consensus       227 l~~~~~~~~~~~~~~--~~~~~~~~~~----~~~--------~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (477)
                      .||++++...+.+..  .+..++..+.    ...        . .   ....+.+.....+++.+++....+...+..+.
T Consensus       254 ~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~  333 (521)
T KOG0255|consen  254 PPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFV  333 (521)
T ss_pred             cCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHH
Confidence            559998855443322  1111111100    000        0 0   00111224467777777554443333332211


Q ss_pred             hhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHh
Q 011783          289 DMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAML  368 (477)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (477)
                      ....      |.........+|.+..   ......+........ ..+...++.|||.....+..+..++++...+....
T Consensus       334 ~~~~------y~gl~~~~~~lg~~~~---~~~~~~~~~~~p~~~-~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~  403 (521)
T KOG0255|consen  334 FSLV------YYGLSLNVSGLGGNIY---LNFTLSGLVELPAYF-RNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDD  403 (521)
T ss_pred             HhHH------HHhhhhhhhhcCchHH---HHHHHHHHHHhhHHH-HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            1111      1111111122343332   233333334444444 66788899999999999999999998888877664


Q ss_pred             hhh-hHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHH
Q 011783          369 SGF-GLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFS  435 (477)
Q Consensus       369 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  435 (477)
                      ... .++...    .+..++....+...+.+..|.+|+..|..+.+..+....++.+++|.+.-....
T Consensus       404 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  404 LGGWLHWILP----LLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ  467 (521)
T ss_pred             chhHHHHHHH----HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            432 122222    222344455555668899999999999999999999999999999998654444

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.94  E-value=2.2e-31  Score=259.13  Aligned_cols=409  Identities=18%  Similarity=0.208  Sum_probs=261.6

Q ss_pred             HHHHHHhhhchhchHhHHHHHH--HHhcccccchh---hhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHH
Q 011783           47 WIIVLCTALPISSLFPFLYFMI--KDFQIAKREED---IGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (477)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~---~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~  121 (477)
                      .++.+...++...+....+...  .+++.+.....   ...+.+++.+...+|..+|++++|.++||+|||+.+.++.++
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~   85 (451)
T PF00083_consen    6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL   85 (451)
T ss_pred             HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence            3445777777777766665444  23333332211   123478999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh---hHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhcc
Q 011783          122 VVIFNTLFGLSV---NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (477)
Q Consensus       122 ~~i~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  197 (477)
                      ..++.++.++++   |++.+.++|++.|++.|...+. ..++.|..|+++|++..++.+....+|..++..++..+....
T Consensus        86 ~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~  165 (451)
T PF00083_consen   86 MIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS  165 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999   9999999999999999988777 999999999999999999999999999999988876663322


Q ss_pred             --ccCCcccccccccccccchHHHHHHHHHhhccccccCCCCCC--ccchhhhhhhhhh---ccchh------hcccCCc
Q 011783          198 --EKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDD--SCDVSYDALESAS---AEVKE------EEGREAT  264 (477)
Q Consensus       198 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~------~~~~~~~  264 (477)
                        ..||..+....++      .+...+....+||+|++...+++  +.++..++.+...   ++.++      +.++.+.
T Consensus       166 ~~~~Wr~~~~~~~~~------~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (451)
T PF00083_consen  166 DNWGWRILLIFGAIP------SLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKA  239 (451)
T ss_pred             ccccccccccccccc------cccccccccccccccceecccccccccccccccccccccccccccccccccccccccce
Confidence              2366655544433      33344555789999998543322  2222212211110   01111      0111113


Q ss_pred             hhhhhhcchhh-HHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011783          265 PKKSLLKNWPL-MSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG  343 (477)
Q Consensus       265 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~  343 (477)
                      .++++++++.. +.......+..............|.  +...+..+.+..  -.......+...++.. ++.++.||+|
T Consensus       240 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~--~~i~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~G  314 (451)
T PF00083_consen  240 SWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYS--PSIFENAGISNS--FLATLILGLVNFLGTL-LAIFLIDRFG  314 (451)
T ss_pred             eeeeccccccccccccccccccccccccccccccccc--cccccccccccc--cccccccccccccccc-cccccccccc
Confidence            46667776542 2222222222222111111122222  222333555555  1112222344444444 6678999999


Q ss_pred             chhHHHHHHHHHHHHHHHHH--HHHHhhhh--hHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHH
Q 011783          344 PIMVARIAGVLTIPLLTSYP--YIAMLSGF--GLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGM  419 (477)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  419 (477)
                      ||+.+..+.....++...+.  ........  .....+.........+..+..+..+.+..|.+|++.|+++.|+....+
T Consensus       315 Rr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~  394 (451)
T PF00083_consen  315 RRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVG  394 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccc
Confidence            99999988888777766554  11111110  111122222222223444566777788999999999999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhhhhhhccCC
Q 011783          420 SLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRHD  477 (477)
Q Consensus       420 ~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (477)
                      .++++++|.+...+.+..          +....+.+.+++++++.+..++ +.||+++
T Consensus       395 ~i~~~i~~~~~~~~~~~~----------~~~~~~~i~~~~~~i~~i~~~~-~lpET~g  441 (451)
T PF00083_consen  395 RIGGFIIPFLFPYLFNNL----------GGWGVFLIFAGVCLIAIIFVYF-FLPETKG  441 (451)
T ss_pred             cccccccccccccccccc----------cccccchhhHHHHHHHHhheeE-EEeeCCC
Confidence            999999999888887766          3234566666666666655544 6888864

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.94  E-value=3.3e-23  Score=201.99  Aligned_cols=402  Identities=14%  Similarity=0.076  Sum_probs=234.5

Q ss_pred             hHHHHHHHHHHHhhhchhchHhHHH-HHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhh-cCCchhhHHH
Q 011783           41 TELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMG  118 (477)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~Grr~~~~~~  118 (477)
                      +.++.++...+.+.+..+...+.++ ++.+++|.+..+      .+++.+.+........+++|+++|| +|||+.+.++
T Consensus        21 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~------a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g   94 (500)
T PRK09584         21 KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEAD------SITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLG   94 (500)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            4467777888888888887777777 556889999988      8888888776666667899999999 5999999999


Q ss_pred             HHHHHHHHHHHHhhh-hHHHHHHHHHHhhhcccchhhH-HHHhhhhccccc--hhhHHHHHHHHhHHHHHHHHhHHHHhh
Q 011783          119 TASVVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEH--QALGLSTVSTAWGIGLIIGPALGGFLA  194 (477)
Q Consensus       119 ~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (477)
                      .++.+++..++++++ +.+.+++.|+++|++.|...+. .++++|++|+++  |..++++++.+.++|..+||.+++++.
T Consensus        95 ~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~  174 (500)
T PRK09584         95 AIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLA  174 (500)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998874 5667778899999999988887 899999998643  556889999999999999999999998


Q ss_pred             hccccCCcccccccccccccchHHHHHHHHHhhccccccCC-CCC-Cccchhhhhh-------------hhhhccchhhc
Q 011783          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHN-DDD-DSCDVSYDAL-------------ESASAEVKEEE  259 (477)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~-~~~~~~~~~~-------------~~~~~~~~~~~  259 (477)
                      +       .++|+..|..........++.++......++.. +++ ++.+.. +..             .....+.+..+
T Consensus       175 ~-------~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (500)
T PRK09584        175 A-------KYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYR-KLLLTIVGVVALIAIATWLLHNQEIAR  246 (500)
T ss_pred             H-------hhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchh-hHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            8       455666552111111111111111111111110 000 001100 000             00000000000


Q ss_pred             --------------ccCCchhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcC----cccCCccccchhhhHHHHH
Q 011783          260 --------------GREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANS----PKKLGGLNYSTQMVGEVLA  321 (477)
Q Consensus       260 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~g~~~~  321 (477)
                                    .......++.-|+| .+..+... +.....+......+.++..    .......|+. ...+.+.+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~-i~~~~~~s  323 (500)
T PRK09584        247 MALGVVALGIVVIFGKEAFAMKGAARRK-MIVAFILM-LEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIA-VEPEQYQA  323 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCHHHHHH-HHHHHHHH-HHHHHHHHHHHHhccHHHHHHHHhccccccceE-ECHHHHHH
Confidence                          00000001111222 22111111 1111112222222222211    0000001211 12455566


Q ss_pred             HHHHHHHHHHHHHH----HHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHhhhhHHHHhH
Q 011783          322 ITGFSLLVFQLSLY----PFLERILGPIMVARIAGVLTIPLLTSYPYIAMLS---GFGLAFLLNCASVVKNLLSVSIITG  394 (477)
Q Consensus       322 ~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  394 (477)
                      .+.+..++..+ +.    +++.+|.+..+.+..+.++.+++++.+.......   .............+.+++.....|.
T Consensus       324 ~n~i~iil~~p-~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~  402 (500)
T PRK09584        324 LNPFWIMIGSP-ILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGL  402 (500)
T ss_pred             HhHHHHHHHHH-HHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHH
Confidence            66666666655 43    4445555566777788888888877766554321   1111224555666678899999999


Q ss_pred             HHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhc---cc-cCCCCchHHHHHHHHHHHHHH
Q 011783          395 LFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRL---DA-SFLPGSQMVFFVLNVVEAIGV  464 (477)
Q Consensus       395 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~---~~-~~~~g~~~~~~~~~~~~~~~~  464 (477)
                      ..+++.+..|++.||+++|+......+|..+    .|.+.+......   +. ....++...|...++.+++..
T Consensus       403 g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a  472 (500)
T PRK09584        403 GLAMVAQLVPQRLMGFIMGSWFLTTAGAALI----AGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIA  472 (500)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999765555544444    444443221100   00 000136677777776655443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.93  E-value=5.3e-23  Score=188.92  Aligned_cols=381  Identities=14%  Similarity=0.155  Sum_probs=252.0

Q ss_pred             hhHHHHHHHHHHHhhhchhchHhHHHHHHH-HhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHH
Q 011783           40 ITELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (477)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~  118 (477)
                      ++..+......+..++..+...|..|...+ +.|++.++      +|.+.++..+...+.+|+.|.++||+|.||-++..
T Consensus         6 ~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~------iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~   79 (412)
T PF01306_consen    6 NKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTE------IGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWF   79 (412)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH------HHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHH------HHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHH
Confidence            356777777888888889999999997665 48999999      99999999999999999999999999977766554


Q ss_pred             HHHHHH--HH-HHHHhhh----hHH-HHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhH
Q 011783          119 TASVVI--FN-TLFGLSV----NFW-MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPAL  189 (477)
Q Consensus       119 ~~~~~i--~~-~~~~~~~----~~~-~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  189 (477)
                      +....+  +. +...+.+    |++ ..+++-...|+......|. -+++.++.  ++.+.-.|-..+..++|.+++..+
T Consensus        80 i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~  157 (412)
T PF01306_consen   80 IAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLL  157 (412)
T ss_dssp             HHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHH
Confidence            433322  22 2222322    221 1222222233333333444 55555443  455677788888999999999999


Q ss_pred             HHHhhhccccCCcccccccccccccchHHHHHHHHHhh-ccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhh
Q 011783          190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAF-GETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS  268 (477)
Q Consensus       190 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (477)
                      +|.+.+..+.+  .++..      .....+..+..+.. |+.++..+.++.+..+              +++...+...+
T Consensus       158 ~G~L~~i~p~~--~fwi~------s~~~~il~lll~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~  215 (412)
T PF01306_consen  158 AGILFNINPNI--IFWIA------SAAAIILLLLLLLLKPDVPPQAEVADALGAK--------------KDKVSLKDVLS  215 (412)
T ss_dssp             HHHHHHHHHHH--HHHHH------HHHHHHHHHHHHSS---SSSSS-SSTTSSS--------------------HHHHHH
T ss_pred             hheeeeeCccH--HHHHH------HHHHHHHHHHHHHcCCcCchhhhhhcccccC--------------CCCCcHHHHHH
Confidence            99998732211  12111      11111111111111 1111111111000000              01111234568


Q ss_pred             hhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Q 011783          269 LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVA  348 (477)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  348 (477)
                      ++|+|++|...+...........+...++.|.....  +..+.+....|.+.+...+..++.-. +.+++.+|+|.|+.+
T Consensus       216 l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f--~~~~~g~~~~G~l~s~~v~~E~~~m~-~~p~li~rig~k~~L  292 (412)
T PF01306_consen  216 LFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFF--QSAGQGNQMYGYLWSVQVFLEALMMF-FSPWLINRIGAKNLL  292 (412)
T ss_dssp             HTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--SSHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHH
T ss_pred             HhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccccChhHHhHHHHHHHHHHHHHHH-HHHHHHHhcChHhHH
Confidence            899999999877666665555666655666665422  22456677789999998888888877 899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHH-HHHHHHHHHHhh
Q 011783          349 RIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIA-MTGMSLFKAAGP  427 (477)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~~~~  427 (477)
                      .++..++.+=....++.++..      .+...-.+.++-.........-++++.+|++..++...+. +...++|.++.+
T Consensus       293 llag~i~~iRi~~~~~~~~~~------~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s  366 (412)
T PF01306_consen  293 LLAGVIMAIRIIGSGFATNPW------VISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILS  366 (412)
T ss_dssp             HHHHHHHHHHHHHHHT--SHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcchH------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHh
Confidence            999998888888777666522      4566667777777788888888999999999999999986 567899999999


Q ss_pred             hHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          428 AGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       428 ~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      .++|.++|+.          |++.+|++++.+.+...++..+
T Consensus       367 ~~~G~lyd~~----------G~~~tylimg~iv~~~~li~~f  398 (412)
T PF01306_consen  367 PLAGYLYDRI----------GFQHTYLIMGLIVLPFTLISAF  398 (412)
T ss_dssp             HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHhhHhhc----------CcHHHHHHHHHHHHHHHHHhee
Confidence            9999999999          8888999999888877777666

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.93  E-value=1.4e-22  Score=192.25  Aligned_cols=411  Identities=15%  Similarity=0.151  Sum_probs=260.9

Q ss_pred             chhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhh----hcCCchh
Q 011783           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGRKPV  114 (477)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~D----r~Grr~~  114 (477)
                      |.++++.+....+...+......+.++.+.+++|.+..+      .+++..+..+...+.+|+.|+++|    |+||||.
T Consensus         2 ~~~~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~------~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp   75 (477)
T TIGR01301         2 PLRKLLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAW------ASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRP   75 (477)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHH
Confidence            345677777777777888888899999899999999988      999999999999999999999999    5999999


Q ss_pred             hHHH-HHHHHHHHHHHHhhhhHHH-----------------HHHHHHHhhhcccchhh-HHHHhhhhccccch--hhHHH
Q 011783          115 IIMG-TASVVIFNTLFGLSVNFWM-----------------AVLTRFLLGSLNGLLGP-IKAYACEIFREEHQ--ALGLS  173 (477)
Q Consensus       115 ~~~~-~~~~~i~~~~~~~~~~~~~-----------------l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r--~~~~~  173 (477)
                      ++++ .+...++.++.+++++...                 ++++-.+..++.....+ ..++++|.+|+++|  +.+.+
T Consensus        76 ~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~  155 (477)
T TIGR01301        76 FIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANA  155 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHH
Confidence            8875 6666677777777666432                 22222233345555444 49999999998865  68999


Q ss_pred             HHHHHhHHHHHHHHhHHHHhhhcc-ccCC-----cc--cccccccc-cccchHHHHHHHHHhhccccccCCCCCCccchh
Q 011783          174 TVSTAWGIGLIIGPALGGFLAQPA-EKYP-----NL--FSSESLFG-KFPYFLPCLCISLFAFGETLHRHNDDDDSCDVS  244 (477)
Q Consensus       174 ~~~~~~~~g~~~g~~~~~~l~~~~-~~~~-----~~--~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  244 (477)
                      +.+...++|.++|+.++++..... .++.     ..  -+.+..|. .....+...+..++..+|.+...+++.++.   
T Consensus       156 ~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~---  232 (477)
T TIGR01301       156 YFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS---  232 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh---
Confidence            999999999999999998752110 0000     00  01222231 000111222233334455443211110000   


Q ss_pred             hhhhhhhhccchhhcccCCchhhhhhc-----chhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCcc----ccchh-
Q 011783          245 YDALESASAEVKEEEGREATPKKSLLK-----NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGL----NYSTQ-  314 (477)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~-  314 (477)
                        +.++.   +   +.+.....+++++     .+.++..++..++..+..+.+..+.+.|..+.....+-    .++.. 
T Consensus       233 --~~~~~---~---~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gv  304 (477)
T TIGR01301       233 --EAAPP---S---KHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGV  304 (477)
T ss_pred             --hcccc---c---ccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHH
Confidence              00000   0   0001112233332     35677778888877666666665555554432111100    01000 


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHHHHhhh---------------hhHHHHH
Q 011783          315 -MVGEVLAITGFSLLVFQLSLYPFLERILGP-IMVARIAGVLTIPLLTSYPYIAMLSG---------------FGLAFLL  377 (477)
Q Consensus       315 -~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~  377 (477)
                       ...+....+.+...+.++ +-.++.+|+|+ |+....+.++.++++....+.....+               .......
T Consensus       305 r~G~~~l~~~s~~~~i~s~-~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (477)
T TIGR01301       305 RAGAFGLMLNSVVLGITSI-GMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASA  383 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHH
Confidence             022334445555556666 67888999985 67778888888888777765543111               0112344


Q ss_pred             HHHHHHHhhhhHHHHhHHHHHHhhcCCc--chhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHH
Q 011783          378 NCASVVKNLLSVSIITGLFILQNRAVDQ--DQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFV  455 (477)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~  455 (477)
                      ++.....|+.....+..-++++++..|+  +..|..+|+.|.+..+.+.+.....|.+.+..++        +....+.+
T Consensus       384 l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~--------~~~~~~~~  455 (477)
T TIGR01301       384 LIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG--------GNLPAFVV  455 (477)
T ss_pred             HHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC--------CCeeHHHH
Confidence            4555556788888888899999998884  5669999999999999999999999986666543        24468888


Q ss_pred             HHHHHHHHHHHHhhhhhhccC
Q 011783          456 LNVVEAIGVLMTFKPFLAQRH  476 (477)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~  476 (477)
                      .++..+++.++..+ .+|+++
T Consensus       456 ~gv~~~~aa~~~~~-~~~~~~  475 (477)
T TIGR01301       456 GAVAAFVSGLLALI-LLPRPR  475 (477)
T ss_pred             HHHHHHHHHHHHHH-hCCCCC
Confidence            88888888887776 566654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.93  E-value=3.5e-23  Score=190.84  Aligned_cols=387  Identities=12%  Similarity=0.030  Sum_probs=236.1

Q ss_pred             hhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhhhhHH
Q 011783           57 ISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFW  136 (477)
Q Consensus        57 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~  136 (477)
                      +.....+.|++.+|+|++++|.     .|.+.++++.+|++++++.|+++||+|.|+++.++.+.+++..++.++++++.
T Consensus        42 R~n~s~a~p~L~~elglT~~qv-----~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~  116 (511)
T TIGR00806        42 RPGESFITPYLLTVLNFTEETV-----TNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVW  116 (511)
T ss_pred             hchHHHHHHHHHHHcCCCHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556677889999999998862     69999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcccchhhHHHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCcccccccccccccch
Q 011783          137 MAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYF  216 (477)
Q Consensus       137 ~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  216 (477)
                      .+.+.|++.|++.|...+...++..|+|+++|+++.++...+..+|.++++++++++..  .+||+......+-   ...
T Consensus       117 ~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s--~gWr~y~~Ln~Is---l~s  191 (511)
T TIGR00806       117 HMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVT--LGWISYSTLNIIS---LVF  191 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHH---HHH
Confidence            99999999999999988449999999999999999999999999999999999999443  3566544332211   111


Q ss_pred             HHHHHHHHHhhcccccc---CCCCCCccchhhhhhhhhhc-----cchhhc-------ccCCchhhhhhcchhhHHHHHH
Q 011783          217 LPCLCISLFAFGETLHR---HNDDDDSCDVSYDALESASA-----EVKEEE-------GREATPKKSLLKNWPLMSSIIV  281 (477)
Q Consensus       217 ~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~-----~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~  281 (477)
                      ..+.++..+++|..++.   ++++..+.+.. .+.+....     ..+..+       .......++..+|+.+..-.+-
T Consensus       192 ~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlW  270 (511)
T TIGR00806       192 MTFSVFLALFLKRPKRSLFFNRLEDVRGALP-CELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLW  270 (511)
T ss_pred             HHHHHHHHHhCCCCchhhhhccccccccccc-cccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHH
Confidence            22333444566633321   11110000000 00000000     000000       0011233445667766665555


Q ss_pred             HHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH--HHH
Q 011783          282 YCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTI--PLL  359 (477)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~  359 (477)
                      +.+..+.+....++....-......     .+.-.|..-++..+.+.+.++ ..|++..++.+...+.++.....  ..+
T Consensus       271 wa~a~~g~~qv~~Y~Q~LW~~v~~~-----~~~yNG~veA~~tllga~~a~-~ag~~~~~w~~~~~l~l~v~s~~~~gll  344 (511)
T TIGR00806       271 WVFNSAGYYLITYYVHTLWGTLDES-----LNKYNGAVDAASTLLGAITSF-IAGFVNIRWARWSKLLIAVVSAIQAGLV  344 (511)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHcCCC-----ccccCCHHHHHHHHHHHHHHH-HHHhhcCCchhhHHHHHHHHHHHHHHHh
Confidence            5555444444444333322221010     111446666666666777776 77777555544333333333222  222


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 011783          360 TSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQK  439 (477)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~  439 (477)
                      +++....+     .| +..+..++.........+....-+++....+.-|.+.|+.+++.-+-+.+-..+   +.|..+-
T Consensus       345 ~~m~~t~~-----Iw-~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~i---Vvd~~gl  415 (511)
T TIGR00806       345 FWMSQSHD-----IW-VLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTIITAV---VSDKRGL  415 (511)
T ss_pred             hhhhcccc-----hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEE---EEccccc
Confidence            22222222     22 334444444455556666666677777887888999999888877766665554   2222111


Q ss_pred             hcc-ccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          440 RLD-ASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       440 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      +.+ -..+.-|..-|.+.+++.++..++...
T Consensus       416 ~l~i~~Qf~vY~~yf~~~~~i~~~~~~~~~~  446 (511)
T TIGR00806       416 GLQVRKQFRIYSVYFLVLSIICFFGAGLDGL  446 (511)
T ss_pred             CCCceeEEEehhhHHHHHHHHHHHHHHHHHh
Confidence            000 001113445666666666666555444

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.92  E-value=4e-25  Score=185.57  Aligned_cols=387  Identities=15%  Similarity=0.149  Sum_probs=258.7

Q ss_pred             HHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhh-cCCchhhHHHHHH
Q 011783           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGTAS  121 (477)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~Grr~~~~~~~~~  121 (477)
                      +...++..|-+++.+........++.+|.+++..+      ..++.++|.....+.+.+.|++.|| +|-|.--++-+..
T Consensus        46 lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~ak------ftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~f  119 (459)
T KOG4686|consen   46 LVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAK------FTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIF  119 (459)
T ss_pred             HHHHHHhcccceeecCCchhhhhhhhcccccceee------eeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHH
Confidence            44555666667777778888888899999999988      9999999999999999999999997 6888777776667


Q ss_pred             HHHHHHHHH---hhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhcc
Q 011783          122 VVIFNTLFG---LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (477)
Q Consensus       122 ~~i~~~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  197 (477)
                      ..++.++++   ..+.+|.+..+|++.|+|.-...++ +.+..-|+..||.+.++|+......+|..+--.+.+++.+..
T Consensus       120 v~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~  199 (459)
T KOG4686|consen  120 VFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTM  199 (459)
T ss_pred             HHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHH
Confidence            777777665   4689999999999999997777777 999999999999999999999999999988777777776632


Q ss_pred             ccCCcccccc--cccccccchHH-HHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchh
Q 011783          198 EKYPNLFSSE--SLFGKFPYFLP-CLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP  274 (477)
Q Consensus       198 ~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (477)
                      ..   .++-.  ...+.+.+... .....+... .+....   ++..++.   ++.++...   .+.++..-.+-+ .|.
T Consensus       200 ~~---~~~~~ghT~LG~~l~~~~~tc~~slica-l~lg~~---D~rAeri---lh~e~g~~---Ge~pkLtdv~~f-~pp  265 (459)
T KOG4686|consen  200 GR---MFPGVGHTLLGLWLCFEVKTCKQSLICA-LSLGLS---DDRAERI---LHLEEGFL---GEEPKLTDVNTF-YPP  265 (459)
T ss_pred             HH---hcccchHHHHHHHHHHHHHHHHHHHHHH-HHhhhh---hhHHHHH---HhhhcCcc---cCCccccccccc-Ccc
Confidence            11   11100  00000000000 000000000 000000   0111110   00000000   000111111112 477


Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 011783          275 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  354 (477)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  354 (477)
                      +|...+..+++....+.+...-+.+.++     ++|+|+..++.+.+.......+.++ +.+.++|+.|++...+....+
T Consensus       266 fw~~~iicv~yyva~fPFi~lg~~fF~~-----rfGlS~~~a~~i~s~vy~Isav~sp-vfg~i~Dk~G~n~~wv~~a~~  339 (459)
T KOG4686|consen  266 FWVLVIICVLYYVAWFPFITLGPMFFQK-----RFGLSAVSAGNILSTVYGISAVLSP-VFGAISDKYGFNLWWVASACI  339 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHH-----hhCCChhhccchhhhhhhhhhhhhh-hHHHhHhhhcceehhHHHHHH
Confidence            8988888888888777777777766654     4999999999999888888888888 889999999988776655444


Q ss_pred             HHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHH
Q 011783          355 TIPL-LTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL  433 (477)
Q Consensus       355 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l  433 (477)
                      ..+. -..+.+...  ++  +    ....+.|..........+..++..+|+++.|++.|.++.+.++|-++.|.++|.+
T Consensus       340 ~tl~~H~~l~Ft~l--sP--y----~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i  411 (459)
T KOG4686|consen  340 LTLLGHSGLFFTFL--SP--Y----TSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFI  411 (459)
T ss_pred             HHHHHhhhHHhhhc--cH--H----HHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhhee
Confidence            3333 333322221  11  1    1222223344444555667788889999999999999999999999999999999


Q ss_pred             HHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          434 FSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       434 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      .|..+.+.      ..+..|+..+.+++....+.+.
T Consensus       412 ~d~~g~y~------~le~ffl~~~~~aL~svgil~~  441 (459)
T KOG4686|consen  412 ADGDGSYD------NLEAFFLIIGLMALTSVGILFY  441 (459)
T ss_pred             ecCCCchh------hHHHHHHHHHHHHHHHHHHHhh
Confidence            98874432      3455666666666666655544

>PTZ00207 hypothetical protein; Provisional

Probab=99.92  E-value=5.6e-22  Score=191.96  Aligned_cols=382  Identities=10%  Similarity=0.053  Sum_probs=244.6

Q ss_pred             hchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhh-----
Q 011783           58 SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-----  132 (477)
Q Consensus        58 ~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~-----  132 (477)
                      +.++...|.+.+++|.+..+      .+++.++. .....++++.|+++||+|||+++.++.++++++.++++++     
T Consensus        44 y~fsv~s~~L~~~lgls~~~------l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i  116 (591)
T PTZ00207         44 YAFNLISGAMQARYNLTQRD------LSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVI  116 (591)
T ss_pred             HHHHHHHHHHHHHhCcCHHH------HHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            45556778999999999999      89988774 4556788899999999999999999999999999999987     


Q ss_pred             -hhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHH-HHhHHHHhhhccccCCcccccccc
Q 011783          133 -VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLII-GPALGGFLAQPAEKYPNLFSSESL  209 (477)
Q Consensus       133 -~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~~~~~~~~~~~~~~~~  209 (477)
                       ++++.+.+.|++.|++.+...+. ...+.+++| ++||++.|+.....++|..+ +++..+++.+   +|++.+..-++
T Consensus       117 ~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~---~~~~~fl~l~v  192 (591)
T PTZ00207        117 EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD---NTSAYFFFLMS  192 (591)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHH
Confidence             68999999999999998887776 888899997 78999999999999999975 5555554432   23322221111


Q ss_pred             cccccchHHHHHHHHHhhcccc--cc--CCCCCCccchh-----------------h---------------------h-
Q 011783          210 FGKFPYFLPCLCISLFAFGETL--HR--HNDDDDSCDVS-----------------Y---------------------D-  246 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~l~~~~--~~--~~~~~~~~~~~-----------------~---------------------~-  246 (477)
                           ...+..++....+.+.+  .+  ++.+.++.+..                 .                     + 
T Consensus       193 -----l~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~  267 (591)
T PTZ00207        193 -----FALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVA  267 (591)
T ss_pred             -----HHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHH
Confidence                 11111222222222221  11  11000111110                 0                     0 


Q ss_pred             ---------------hh----------------h----hhhcc--c-------------h--------h-hcccCCchhh
Q 011783          247 ---------------AL----------------E----SASAE--V-------------K--------E-EEGREATPKK  267 (477)
Q Consensus       247 ---------------~~----------------~----~~~~~--~-------------~--------~-~~~~~~~~~~  267 (477)
                                     ..                +    ++..+  .             +        + ...+...+.+
T Consensus       268 ~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~  347 (591)
T PTZ00207        268 YLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFI  347 (591)
T ss_pred             HhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHH
Confidence                           00                0    00000  0             0        0 0011112666


Q ss_pred             hhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCcc-ccch-hh-hHHHHHHHHHHHHHHHHHHHHHHH----H
Q 011783          268 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGL-NYST-QM-VGEVLAITGFSLLVFQLSLYPFLE----R  340 (477)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~-~~-~g~~~~~~~~~~~~~~~~~~~~l~----~  340 (477)
                      +.+++..+|.+...+++..................      + |.+. .+ ...+.++.++.+.+|++ ..+.++    +
T Consensus       348 q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~s------l~g~~~~~~~~~~~vsL~si~~~~GRl-~~g~~~~~~~~  420 (591)
T PTZ00207        348 EGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTA------LAGEAPDDALNTLLTVLNGVGSAVGRL-CMSYFEIWSQK  420 (591)
T ss_pred             HHHhchhHHHHHHHHHHhhCchheeeecHHHHHHH------hcCCCCCccceeeehhhhhHHHHhhHH-HHHHHHHHHHh
Confidence            77888899998888888766555554444433332      4 4422 21 22267788888888887 777766    2


Q ss_pred             hhc----chhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHH
Q 011783          341 ILG----PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAM  416 (477)
Q Consensus       341 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~  416 (477)
                      |..    +|........++.++.+++.+...      ...+.+..++.+++.+..++.....++|++. ++-|+-+-+..
T Consensus       421 ~~~~~r~prt~~l~~~~~~~~~~lll~~~~p------~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~  493 (591)
T PTZ00207        421 RRAEDRVPITIALFIPSVCIITMLTLFLTLP------KAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCF  493 (591)
T ss_pred             hccccccchhHHHHHHHHHHHHHHHHHHHCC------ccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHh
Confidence            221    112222222223333333333221      1246666677778889999999999999999 88999888888


Q ss_pred             HHHHHHHHHh-hhHHHHHHHHhhhhccccCCCC---chHHHHHHHHHHHHHHHHHhh
Q 011783          417 TGMSLFKAAG-PAGGGALFSWAQKRLDASFLPG---SQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       417 ~~~~~g~~~~-~~~~g~l~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      ...-+|..+- -.++|.++|.-..........|   ++.+|++++++++++.+....
T Consensus       494 ~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~  550 (591)
T PTZ00207        494 LGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTY  550 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhh
Confidence            8888888776 6788999987654332211112   678999999999999887655

>PRK09669 putative symporter YagG; Provisional

Probab=99.91  E-value=1.3e-21  Score=189.49  Aligned_cols=364  Identities=16%  Similarity=0.045  Sum_probs=224.6

Q ss_pred             chhHHHHHHHHHHHhhhchhchHhHH-HHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhh----cCCch
Q 011783           39 PITELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKP  113 (477)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr----~Grr~  113 (477)
                      ++++.+.-.++.+...+....+...+ +++.+++|++..+      +|.+.++..+..++..|+.|+++||    +||||
T Consensus         7 ~~~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~------~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrr   80 (444)
T PRK09669          7 TTKDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAI------MGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFR   80 (444)
T ss_pred             cHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHcccceeeEeeecCCCCCCCcc
Confidence            34444444444444444444444444 4778889999999      9999999999999999999999998    78754


Q ss_pred             -hhHHHHHHHHHHHHHHHhhh------hHHHHHHHHHHhhhcccchhhH-HHHhhhhc-cccchhhHHHHHHHHhHHHHH
Q 011783          114 -VIIMGTASVVIFNTLFGLSV------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIF-REEHQALGLSTVSTAWGIGLI  184 (477)
Q Consensus       114 -~~~~~~~~~~i~~~~~~~~~------~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~  184 (477)
                       .++.+.+..++..++....+      .+.++++...+.+.+.....+. .++.+|+. +++||.+..++......+|..
T Consensus        81 p~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~  160 (444)
T PRK09669         81 PYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGL  160 (444)
T ss_pred             hhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence             56567777777766554443      2566666776777665554444 88999988 568899999998888888888


Q ss_pred             HHHhHHHHhhhccccCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCc
Q 011783          185 IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT  264 (477)
Q Consensus       185 ~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (477)
                      +++.+...+.....+.....+|+..+..  +.+...+..+.....++++.+++ ++ +                +.+...
T Consensus       161 i~~~~~~pl~~~~~~~~~~~g~~~~~~i--~~ii~~v~~~~~~~~~~e~~~~~-~~-~----------------~~~~~~  220 (444)
T PRK09669        161 IVSVIALPLVDILGKGDEQKGYFYAMMV--MGLLGVVLFFCCFFMTKERYTPE-VD-N----------------SSSVWK  220 (444)
T ss_pred             HHHHHHHHHHHHhCCCchhhhHHHHHHH--HHHHHHHHHHHHhCCeEEecCCC-Cc-C----------------CCCHHH
Confidence            8877665554422111112344333200  01111111111111111110000 00 0                111234


Q ss_pred             hhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011783          265 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP  344 (477)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  344 (477)
                      ..+.++|||.++..+...++.............+|..+.     .+ ++...+.+.....+..+++.+ +.+++.||+|+
T Consensus       221 ~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~-----~~-~~~~~~~~~~~~~i~~ii~~~-~~~~l~~r~gk  293 (444)
T PRK09669        221 DLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYV-----LL-RPDLATLFLVTGMIAGLFGAL-LSERLLGKFDR  293 (444)
T ss_pred             HHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeee-----cC-CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCh
Confidence            567888999988887776665544444334333332221     22 233334444444566666655 78899999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCC-------cchhhHHhHHHHH
Q 011783          345 IMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVD-------QDQRGAANGIAMT  417 (477)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~  417 (477)
                      |+....+..+..+....+.+... .+   ...+.+...+.+++.+...+...++.+|.+|       ++..|...|..+.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~  369 (444)
T PRK09669        294 VRAFKWTIVAFVILSALIFFIPP-SN---VWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLF  369 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCc-ch---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHH
Confidence            99988877655543332222211 11   1122333445567777888888899988775       3345677899999


Q ss_pred             HHHHHHHHhhhHHHHHHHHhhh
Q 011783          418 GMSLFKAAGPAGGGALFSWAQK  439 (477)
Q Consensus       418 ~~~~g~~~~~~~~g~l~~~~~~  439 (477)
                      ...+|.++|+.+.|.+++..+-
T Consensus       370 ~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        370 AIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999998744

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.91  E-value=1.3e-20  Score=179.57  Aligned_cols=404  Identities=13%  Similarity=0.086  Sum_probs=231.9

Q ss_pred             hhHHHHHHHHHHHhhhchhchHhHHHH-HHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhc-CCchhhHH
Q 011783           40 ITELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVIIM  117 (477)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-Grr~~~~~  117 (477)
                      .+.+..++...+...+..+.....+|. +.+++|.++.+      .+.+.+.+.....++++++|+++||+ ||||++++
T Consensus         8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~------a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~ili   81 (493)
T PRK15462          8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNH------AYELFSAYCSLVYVTPILGGFLADKVLGNRMAVML   81 (493)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHH
Confidence            356777777888888888888888884 56678999999      99999999999999999999999999 99999999


Q ss_pred             HHHHHHHHHHHHHhhh-hHHHHHHHHHHhhhcccchhhH-HHHhhhhcccc--chhhHHHHHHHHhHHHHHHHHhHHHHh
Q 011783          118 GTASVVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE--HQALGLSTVSTAWGIGLIIGPALGGFL  193 (477)
Q Consensus       118 ~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~l  193 (477)
                      +.++..++.++.+..+ +...+.+...+.+++.|...+. .++++|.+|++  +|..++++.+...++|..++|.+.+++
T Consensus        82 G~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L  161 (493)
T PRK15462         82 GALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYA  161 (493)
T ss_pred             HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHH
Confidence            9999999987776543 2233444444555667776676 88999999875  799999999999999999999999999


Q ss_pred             hhccccCCcccccccccccccchHHHHHHHHHhhccccccCCC-CCCccchhhhh----------------hhhhh-ccc
Q 011783          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHND-DDDSCDVSYDA----------------LESAS-AEV  255 (477)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~----------------~~~~~-~~~  255 (477)
                      .+       .++|+..|..........++..+...+...+... ++++.++....                ..... .+.
T Consensus       162 ~~-------~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (493)
T PRK15462        162 QE-------EYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKE  234 (493)
T ss_pred             Hh-------hhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87       4556655521111111111111111111111100 01111000000                00000 000


Q ss_pred             h-h---------------hcccCCchhhhhhcchh--hHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhH
Q 011783          256 K-E---------------EEGREATPKKSLLKNWP--LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVG  317 (477)
Q Consensus       256 ~-~---------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g  317 (477)
                      . .               .....+.+..  -|+|-  +....+...++...+....+.+..|..+....+-.|++ ...+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~  311 (493)
T PRK15462        235 WSVYALIVATIIGLGVLAKIYRKAENQK--QRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTA  311 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHH--HHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHH
Confidence            0 0               0000000000  01111  11122222222222233333344444432111112332 2245


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-c-ch---h--HHHHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHhhh
Q 011783          318 EVLAITGFSLLVFQLSLYPFLERIL-G-PI---M--VARIAGVLTIPLLTSYPYIAMLS---GFGLAFLLNCASVVKNLL  387 (477)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~---~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  387 (477)
                      ...+++.+..++.++++ .++=.|. + +|   .  =..+|+++.+++++.+.......   .......++...++.+.+
T Consensus       312 ~~qslNp~~ii~l~P~~-a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~g  390 (493)
T PRK15462        312 MFQSINAFAVMLCGVFL-AWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFA  390 (493)
T ss_pred             HHHhHhHHHHHHHHHHH-HHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHH
Confidence            66677777777776633 3332222 1 11   1  24567777777766665433221   112333456666667889


Q ss_pred             hHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccc------cCCCCchHHHHHHHHHHH
Q 011783          388 SVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDA------SFLPGSQMVFFVLNVVEA  461 (477)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~------~~~~g~~~~~~~~~~~~~  461 (477)
                      .....|...+++++..|++.+|..+|+.....   .++++.++|.+.+........      .....+...|...+...+
T Consensus       391 El~~sPvgls~~~~laP~~~~g~~mg~w~l~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~  467 (493)
T PRK15462        391 ELFIDPVAMSQITRIEIPGVTGVLTGIYMLLS---GAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGAL  467 (493)
T ss_pred             HHHHChHHHHHHHHhChHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999984422   234455555555443211000      001135566766665554


Q ss_pred             HH
Q 011783          462 IG  463 (477)
Q Consensus       462 ~~  463 (477)
                      +.
T Consensus       468 ~~  469 (493)
T PRK15462        468 AC  469 (493)
T ss_pred             HH
Confidence            44

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.91  E-value=3.8e-21  Score=187.33  Aligned_cols=366  Identities=11%  Similarity=0.060  Sum_probs=229.3

Q ss_pred             HHHHHHHHHHHhhhchhchHhHHH-HHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhh----hcCC-chhh
Q 011783           42 ELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGR-KPVI  115 (477)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~D----r~Gr-r~~~  115 (477)
                      ..+.-.++.+...+..+.+.+.++ ++.+.+|++...      +|.+..+.-+.-++..|+.|+++|    |+|| |+.+
T Consensus         7 ~~~~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~------vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~i   80 (473)
T PRK10429          7 TKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGL------VGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWI   80 (473)
T ss_pred             HHHhhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhH
Confidence            333444555556666667777666 666678999999      999999999999999999999999    6699 5566


Q ss_pred             HHHHHHHHHHHHHHHhhh------hHHHHHHHHHHhhhcccchhhH-HHHhhhhc-cccchhhHHHHHHHHhHHHHHHHH
Q 011783          116 IMGTASVVIFNTLFGLSV------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIF-REEHQALGLSTVSTAWGIGLIIGP  187 (477)
Q Consensus       116 ~~~~~~~~i~~~~~~~~~------~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~  187 (477)
                      +++.+..+++.+++...+      .+..+++...+.+++.....+. .++.+|.. +++||.+..++-....++|..+.+
T Consensus        81 l~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~  160 (473)
T PRK10429         81 LIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTA  160 (473)
T ss_pred             hhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678888777766654432      2445666666777776666555 88999999 589999999987777777766666


Q ss_pred             hHHHHhhhccccCCcccccccccccccchHHHHHHHHHh---hccccccCCCCCCccchhhhhhhhhhccchhhcccCCc
Q 011783          188 ALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA---FGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT  264 (477)
Q Consensus       188 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (477)
                      .+...+.....+.....+|+....  .+.+...+..+..   .+|.+.....+.++.                ++.+.++
T Consensus       161 ~~~~~~~~~~g~~~~~~g~~~~~~--i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~----------------~~~~~~~  222 (473)
T PRK10429        161 GFTLPFVNYVGGGDRGFGFQMFTL--VLIAFFIVSTIITLRNVHEVYSSDNQVSAEG----------------SHLTLKD  222 (473)
T ss_pred             HHHHHHHHHhCCCchhhhHHHHHH--HHHHHHHHHHHHHHcCceecCCccccccccc----------------cCCCHHH
Confidence            555444321111111112222210  0011111111111   222211000000000                0112233


Q ss_pred             hhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011783          265 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP  344 (477)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  344 (477)
                      ..+.+++||.++..+...++..........+.++|....     .+ +....+.+.....++.+++.+ +.+++.||+|+
T Consensus       223 ~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~-----~~-~~~~~~~~~~~~~i~~ii~~~-~~~~l~~r~gk  295 (473)
T PRK10429        223 IVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYV-----IG-DADLFPYYLSYAGAANLVTLI-LFPRLVKSLSR  295 (473)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEE-----CC-CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCc
Confidence            456677899988887777776655555555544343321     22 345566677766677888877 78999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCC-------cchhhHHhHHHHH
Q 011783          345 IMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVD-------QDQRGAANGIAMT  417 (477)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~  417 (477)
                      |+.+..+..+..++.+.+......... ....+.+...+.+++.+...+...++.+|.+|       .+..|..+|..+.
T Consensus       296 k~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~  374 (473)
T PRK10429        296 RILWAGASIFPVLSCGVLLLMGLAAPH-NALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTM  374 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHH
Confidence            999988877666554443322111111 11123333444556667777777888888866       3445668999999


Q ss_pred             HHHHHHHHhhhHHHHHHHHhhh
Q 011783          418 GMSLFKAAGPAGGGALFSWAQK  439 (477)
Q Consensus       418 ~~~~g~~~~~~~~g~l~~~~~~  439 (477)
                      ...++..+++.+.|.+++..+-
T Consensus       375 ~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        375 VVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999987643

>TIGR00788 fbt folate/biopterin transporter

Probab=99.90  E-value=4.4e-22  Score=192.49  Aligned_cols=374  Identities=13%  Similarity=0.028  Sum_probs=238.4

Q ss_pred             hhHHHHHHHHHHHhhhchhchH-hHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcC-----Cch
Q 011783           40 ITELFSIWIIVLCTALPISSLF-PFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-----RKP  113 (477)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~G-----rr~  113 (477)
                      ...+.++...++..++. +... ...|.+.+++|++.++      ++...+...+...+-.+ +|+++||++     ||+
T Consensus        25 ~~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~------i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~   96 (468)
T TIGR00788        25 RVVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGAR------YQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRW   96 (468)
T ss_pred             chHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchH
Confidence            34455666677888887 5444 4455777789999999      99999999999998655 999999998     788


Q ss_pred             hhHHHHHHHH-HHHHHHHhhhhHHHHH-HHHHHhhhcccchhhH-HHHhhhhccccchhhH---HHHHHHHhHHHHHHHH
Q 011783          114 VIIMGTASVV-IFNTLFGLSVNFWMAV-LTRFLLGSLNGLLGPI-KAYACEIFREEHQALG---LSTVSTAWGIGLIIGP  187 (477)
Q Consensus       114 ~~~~~~~~~~-i~~~~~~~~~~~~~l~-~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~---~~~~~~~~~~g~~~g~  187 (477)
                      .++++.++.+ +.....+..++..... +..++.+++.+...++ .++..|..+ |++...   .+......++|.++|+
T Consensus        97 ~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~  175 (468)
T TIGR00788        97 YLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISS  175 (468)
T ss_pred             HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHH
Confidence            8888877763 4434444445544444 4788999998888777 999999998 555443   3334444568999999


Q ss_pred             hHHHHhhhccccCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhh
Q 011783          188 ALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  267 (477)
Q Consensus       188 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (477)
                      .++|.+.+       .++|+..|...............+++|.+.....+.++.+.....  .......+...+.....+
T Consensus       176 ~l~G~l~~-------~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~  246 (468)
T TIGR00788       176 LLGGPLLD-------KTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMA--LLTLGVLANVKVQILGLR  246 (468)
T ss_pred             HHHHHHHH-------hcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhh--hhhhhHHHHHHHHHHHHH
Confidence            99999987       455665552111112222223345556431111110000000000  000000000011122345


Q ss_pred             hhhcchhhHHHHHHHHH-HHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 011783          268 SLLKNWPLMSSIIVYCV-FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM  346 (477)
Q Consensus       268 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  346 (477)
                      +.+++|.++..++..++ +......   ..+.|..   .....|+++.+.|......+++.+++.. +.+++.+|++.|+
T Consensus       247 ~~l~~~~i~~~l~fifl~~~~~~~~---~~~~f~~---~~~~lG~s~~~~G~~~~~~~v~~i~g~~-~~~~~~~~~~~r~  319 (468)
T TIGR00788       247 GAIQLLEIAKPLIFIFLSYANLPGA---SGSVFCA---TTQCLPGGPSFSGMSKVVGNLGSLCGVG-GYDRFLKTFPYRL  319 (468)
T ss_pred             HHHhcHHHHHHHHHHHHHHhhcCCC---CceeEEE---EcccCCCCcchhhhHHHHHHHHHHHHHH-HHHHHHhhCCHHH
Confidence            56778888775555444 2211111   1111111   1234899999999999999999999988 7777788999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHH
Q 011783          347 VARIAGVLTIPLLTSYPYIAMLSG----FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLF  422 (477)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  422 (477)
                      .+..+.++..++............    ............+.++..+........+..+..|++.+|+.+++.+++.++|
T Consensus       320 ~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg  399 (468)
T TIGR00788       320 LFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLG  399 (468)
T ss_pred             HHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHH
Confidence            998888887776544321110000    0011123333344455666677777889999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHhh
Q 011783          423 KAAGPAGGGALFSWAQ  438 (477)
Q Consensus       423 ~~~~~~~~g~l~~~~~  438 (477)
                      ..+++.++|.+.++.+
T Consensus       400 ~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       400 SSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHHHHHHcC
Confidence            9999999999999874

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09848 glucuronide transporter; Provisional

Probab=99.90  E-value=2e-20  Score=181.58  Aligned_cols=356  Identities=16%  Similarity=0.116  Sum_probs=223.2

Q ss_pred             CchhHHHHHHHHHHHhhhchhchHhHHH-HHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhc----CCc
Q 011783           38 LPITELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY----GRK  112 (477)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~----Grr  112 (477)
                      .+++..+.-.++.+...+......+.++ ++.+.+|++..+      +|.+.++..+..++..++.|+++||.    |||
T Consensus         5 ~~~~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~------~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~   78 (448)
T PRK09848          5 LSWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAA------AGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKF   78 (448)
T ss_pred             ccHHHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHhhhhheeeeecCCCCCcCc
Confidence            3445555555666666666666666665 667778999999      99999999999999999999999996    777


Q ss_pred             hhh-HHHHHHHHHHHHHHH-h----hh--hHHHHHHHHHHhhhcccchhhH-HHHhhhhcc-ccchhhHHHHHHHHhH--
Q 011783          113 PVI-IMGTASVVIFNTLFG-L----SV--NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-EEHQALGLSTVSTAWG--  180 (477)
Q Consensus       113 ~~~-~~~~~~~~i~~~~~~-~----~~--~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~-~~~r~~~~~~~~~~~~--  180 (477)
                      |.. .++.+...+..++.. .    .+  .....++...+.+++.+...+. .++..+..+ ++||.+..+.-..+.+  
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~  158 (448)
T PRK09848         79 RPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLT  158 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHH
Confidence            754 555554544444332 1    11  2333455556777777776655 777776664 4688887766554433  


Q ss_pred             ---HHHHHHHhHHHHhhhccccCCcccccccccccccchHHHHHHHHHh---hccccccCCCCCCccchhhhhhhhhhcc
Q 011783          181 ---IGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA---FGETLHRHNDDDDSCDVSYDALESASAE  254 (477)
Q Consensus       181 ---~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (477)
                         ++..++|.+++.......  ...+.|+.++     .+...+..++.   .+|+.+.   + ++              
T Consensus       159 ~~~~~~~~~p~i~~~~g~~~~--~~~~~~~~~~-----~v~~~~~~~~~~~~~~e~~~~---~-~~--------------  213 (448)
T PRK09848        159 FVCLAFLIGPSIKNSSPEEMV--SVYHFWTIVL-----AIAGMVLYFICFKSTRENVVR---I-VA--------------  213 (448)
T ss_pred             HHHHHHHHHHHHHHhCCCchh--hhHHHHHHHH-----HHHHHHHHHHHHcCcEeccCC---C-cc--------------
Confidence               445555655543211000  0122232221     11111111111   1222110   0 00              


Q ss_pred             chhhcccCCchhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHH
Q 011783          255 VKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSL  334 (477)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~  334 (477)
                          +.+....++.++|||.++...+..++............+.|..+.     +|.++...++......++.+++.+ +
T Consensus       214 ----~~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~-l  283 (448)
T PRK09848        214 ----QPSLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYV-----LNDTGLFTVLVLVQNLVGTVASAP-L  283 (448)
T ss_pred             ----CCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeee-----cCChHHHHHHHHHHHHHHHHHHHH-H
Confidence                111123467789999998888877777666666665556555543     666665555544444556666766 8


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcc-------h
Q 011783          335 YPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQD-------Q  407 (477)
Q Consensus       335 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~  407 (477)
                      .+++.||+++|+.+..+..+..++.+.+.+....   ..+ .......+.+++.+...+...++..+..|.+       .
T Consensus       284 ~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~---~~~-~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~  359 (448)
T PRK09848        284 VPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVW---SLP-VALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRI  359 (448)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCch---hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccc
Confidence            8999999999999999988777776655442211   112 2223334455667777788888888877654       4


Q ss_pred             hhHHhHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 011783          408 RGAANGIAMTGMSLFKAAGPAGGGALFSWAQ  438 (477)
Q Consensus       408 ~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  438 (477)
                      +|..+|+.+....+|..+++.+.|.+++..+
T Consensus       360 ~G~~~~~~~~~~klg~aig~~i~g~~l~~~G  390 (448)
T PRK09848        360 EGLTYSLFSFTRKCGQAIGGSIPAFILGLSG  390 (448)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            5999999999999999999999999988763

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.89  E-value=1.1e-19  Score=173.79  Aligned_cols=355  Identities=17%  Similarity=0.127  Sum_probs=246.1

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHH-HHHHHHHHHHHHHhh-h-hHHHHHHHHHHhhhcccchhhH-HHH
Q 011783           83 YAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM-GTASVVIFNTLFGLS-V-NFWMAVLTRFLLGSLNGLLGPI-KAY  158 (477)
Q Consensus        83 ~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~-~~~~~~i~~~~~~~~-~-~~~~l~~~r~l~G~~~g~~~~~-~~~  158 (477)
                      +.++..++..+..++..|+.|.++|+-|+||.++. ..++..+++.+..+. + +++...+.-++.-++.+...+. .++
T Consensus        71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~  150 (477)
T PF11700_consen   71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY  150 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36788899999999999999999999987766554 455556666666664 3 4544455555555566666666 999


Q ss_pred             hhhhccccch--------------------------hhHHHHHHHHhHHHHHHHHhHHHHhhhccccC-Ccccccccccc
Q 011783          159 ACEIFREEHQ--------------------------ALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY-PNLFSSESLFG  211 (477)
Q Consensus       159 i~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~-~~~~~~~~~~~  211 (477)
                      +.|..+++++                          ++..+.-.....+|.++.-++.-.+.....+. ......|..+ 
T Consensus       151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~-  229 (477)
T PF11700_consen  151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF-  229 (477)
T ss_pred             hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH-
Confidence            9999999888                          89988888888888888777765554322211 0011112222 


Q ss_pred             cccchHHHHHHHH------HhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHHHHHHH
Q 011783          212 KFPYFLPCLCISL------FAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVF  285 (477)
Q Consensus       212 ~~~~~~~~~~~~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (477)
                          ....+...+      +.+|+.++.++.++. .+.    ....       -++.....+++.|.|+....++.++++
T Consensus       230 ----~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~-~~~----~~~g-------~~~l~~t~k~~~~~~~~~~fLia~~l~  293 (477)
T PF11700_consen  230 ----LIVALWWLVFSIPLFLWLPDRPGPRPLPSG-SSY----LRFG-------FKRLWRTFKEIRKLRQLFLFLIAYFLY  293 (477)
T ss_pred             ----HHHHHHHHHHHHHHHHhCCCCCCCCCCCcc-hhH----HHHH-------HHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence                222222222      233333331111110 000    0000       111223567777889999999999999


Q ss_pred             HhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHHHHHHH
Q 011783          286 SLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI--MVARIAGVLTIPLLTSYP  363 (477)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~  363 (477)
                      .-.......+...|..+.     +|++..+...+.....+.++++.+ +.+++.||+|.|  +++........+..+...
T Consensus       294 ~dg~~ti~~~~~i~a~~~-----lg~s~~~l~~~~l~~~i~a~~Ga~-~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~  367 (477)
T PF11700_consen  294 SDGVNTIISFAGIYATEV-----LGMSTTQLIVFGLVVQIVAIIGAL-LFGWLQDRFGPKTKRTLLISLILWIIIPLYGL  367 (477)
T ss_pred             HHHHHHHHHHHHHHHHHh-----cCcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCchhHHHHHHHHHHHHHHHHHH
Confidence            888888888888887755     899999999999999999999999 889999999988  777666655533322211


Q ss_pred             H--HHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhc
Q 011783          364 Y--IAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRL  441 (477)
Q Consensus       364 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~  441 (477)
                      +  .....+......+.+...+.+.+.+...+...++.+++.|+++.+..+|++.......+.+||.+.|.+.+.++   
T Consensus       368 ~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg---  444 (477)
T PF11700_consen  368 FGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG---  444 (477)
T ss_pred             HHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---
Confidence            1  11111111222344455566788899999999999999999999999999999999999999999999999982   


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          442 DASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       442 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                            +.+..+....++.+++.++...
T Consensus       445 ------~~r~g~~~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  445 ------SQRYGFLFLLVLFLIGLILLFF  466 (477)
T ss_pred             ------CchhHHHHHHHHHHHHHHHHhh
Confidence                  3667888888888888887765

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.88  E-value=3e-20  Score=179.15  Aligned_cols=344  Identities=14%  Similarity=0.068  Sum_probs=242.2

Q ss_pred             hHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhh----hcCCchh-hHHHHHHHHHHHHHHHhh-h--
Q 011783           62 PFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGRKPV-IIMGTASVVIFNTLFGLS-V--  133 (477)
Q Consensus        62 ~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~D----r~Grr~~-~~~~~~~~~i~~~~~~~~-~--  133 (477)
                      ...+.+.+.+|+++..      .|++..+..+..++..|+.|.++|    |+||||. ++++.+..+++.+++... +  
T Consensus        23 ~~~~f~~~~~gl~~~~------~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~   96 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPAL------AGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAG   96 (428)
T ss_pred             HHHHHHHHHcCCCHHH------HHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccch
Confidence            3445777888999998      999999999999999999999999    8997765 556888888888877765 4  


Q ss_pred             -----hHHHHHHHHHHhhhcccchhhH-HHHhhhhcc-ccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCccccc
Q 011783          134 -----NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSS  206 (477)
Q Consensus       134 -----~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~  206 (477)
                           ...++.+..++..++....... .++.+|..+ ++||.+..+.-.....+|..+...+.+.+.+...+-+...+|
T Consensus        97 ~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~  176 (428)
T PF13347_consen   97 LSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGY  176 (428)
T ss_pred             hhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHH
Confidence                 2344567777778887776555 999999998 579999999999999999987777777766532211111133


Q ss_pred             ccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHHHHHHHH
Q 011783          207 ESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFS  286 (477)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (477)
                      +....  .+.++..+..++.....++.+  ++.+.+              +++.+..+..++++|||+++......++..
T Consensus       177 ~~~~~--v~~iv~~v~~~i~~~~~ke~~--~~~~~~--------------~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~  238 (428)
T PF13347_consen  177 RWMAL--VLAIVGLVFFLITFFFVKERS--VEVTEQ--------------EKKISLRDSLRSLFRNRPFRILLLAFFLQW  238 (428)
T ss_pred             HHHHH--HHHHHHHHHhhhhhheeeecc--cccccc--------------ccccccccchhhhcccchHHHHHHHHHHHH
Confidence            32220  001111111111111111100  000000              013344567888999999999888888877


Q ss_pred             hhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Q 011783          287 LHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA  366 (477)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (477)
                      ..........+.|..+.     .|.+ ...+.+.....+..+++.+ +.+++.||+|+|+.+..+..+.+++.+.+.+..
T Consensus       239 ~~~~~~~~~~~y~~~~v-----l~~~-~~~~~~~~~~~~~~~v~~~-~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~  311 (428)
T PF13347_consen  239 LAFALMNTFLPYYFTYV-----LGNE-GLISIFMLIFFVASIVGSP-LWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG  311 (428)
T ss_pred             hhhhhhhhHHHHHHHHH-----hcCc-hhhHHHHHHHHHHHHHHHH-HHHHHHHHccceeehhhhHHHHHHHHHHHHHHH
Confidence            77777777777666654     3433 4556777777888888877 889999999999999999999888888776665


Q ss_pred             HhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCC-------cchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 011783          367 MLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVD-------QDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQK  439 (477)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~  439 (477)
                      ..    ......+...+.+++.+..+....++.+|..+       ++..|..+|+.+....++..+++.+.|.+.+..+-
T Consensus       312 ~~----~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  312 PG----SPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY  387 (428)
T ss_pred             hh----hHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence            31    12234444455567777777888888888776       34569999999999999999999999999987643


Q ss_pred             h
Q 011783          440 R  440 (477)
Q Consensus       440 ~  440 (477)
                      .
T Consensus       388 ~  388 (428)
T PF13347_consen  388 D  388 (428)
T ss_pred             C
Confidence            3

>TIGR01272 gluP glucose/galactose transporter

Probab=99.87  E-value=7.4e-20  Score=167.22  Aligned_cols=287  Identities=15%  Similarity=0.115  Sum_probs=199.0

Q ss_pred             HhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccC--------
Q 011783          130 GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY--------  200 (477)
Q Consensus       130 ~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~--------  200 (477)
                      +...+|+.++++-++.|.|.+...+. +.++++..++|++++.+++.+..+++|..+||.+++.+......-        
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            35678999999999999999999988 999999999999999999999999999999999999887422100        


Q ss_pred             -CcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHH
Q 011783          201 -PNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSI  279 (477)
Q Consensus       201 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (477)
                       ....+|+..+...........+.+...+ .++. ++  ++.++.              ..++....++.+++|.++...
T Consensus        85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~-~p~~-~~--~~~~~~--------------~~~~~~~~~~~~~~~~~~l~~  146 (310)
T TIGR01272        85 NAEAAKVHTPYLLLAGALAVLAIIFAFLP-LPEL-QE--ADVARV--------------SSGDTTQKTSAFQFTHLVLGA  146 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCC-Cc--cccccc--------------ccccccchhhHHhhHHHHHHH
Confidence             0012344433101011111111111111 1111 00  110000              000011223467788888888


Q ss_pred             HHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 011783          280 IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLL  359 (477)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  359 (477)
                      +..+++.....+...+.+.|+.++   ..+|+++.+.+...+....+.++++. +.+++.||+++++.+..+..+..++.
T Consensus       147 ~~~f~yvg~e~~~~~w~~~yl~~~---~~~g~s~~~a~~~~s~~~~~~~iGr~-~~~~l~~r~g~~~~l~~~~~l~~~~~  222 (310)
T TIGR01272       147 LGIFVYVGAEVSAGSFLVNFLSDP---HALGLPEDQAAHFTAYTWGGAMVGRF-IGSAVMPMISQGRYLAFNAFLAVLLS  222 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc---ccCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            888888888889999999999643   22689999999999999999999998 99999999999998888777666665


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 011783          360 TSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQK  439 (477)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~  439 (477)
                      ++.....   ....  .  ....+.+++.+..+|...+...+..|+ +.+++.++. ....+|+++.|.+.|.+.|..  
T Consensus       223 ~l~~~~~---~~~~--~--~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~--  291 (310)
T TIGR01272       223 IGAALTH---GYVA--M--WFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCL--  291 (310)
T ss_pred             HHHHHcC---CHHH--H--HHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhc--
Confidence            4333222   1111  1  122345678888999988888887774 467777775 677899999999999999987  


Q ss_pred             hccccCCCCchHHHHHHH
Q 011783          440 RLDASFLPGSQMVFFVLN  457 (477)
Q Consensus       440 ~~~~~~~~g~~~~~~~~~  457 (477)
                              |.+..|++..
T Consensus       292 --------g~~~a~~v~~  301 (310)
T TIGR01272       292 --------GIQLAFALPV  301 (310)
T ss_pred             --------cchHHHHHHH
Confidence                    7777776433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.86  E-value=7.1e-19  Score=163.33  Aligned_cols=372  Identities=16%  Similarity=0.088  Sum_probs=263.0

Q ss_pred             CCchhHHHHHHHHHHHhhhchhchHhHHH-HHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhh----cCC
Q 011783           37 GLPITELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGR  111 (477)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr----~Gr  111 (477)
                      +.+.+....-.+..+...+........+. ++.+.+|+++..      +|.+..+.=+--++.-|+.|.++||    +||
T Consensus         8 kLs~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~------aG~iflv~RiiDAi~DP~~G~i~D~t~~r~Gr   81 (467)
T COG2211           8 KLSLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAAL------AGTIFLVARIIDAITDPIMGFIVDRTRSRWGR   81 (467)
T ss_pred             cccHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHH------HHHHHHHHHHHHHHhcchheeeeccccccccc
Confidence            44555566666677777777777777776 667779999998      9999999999999999999999995    787


Q ss_pred             ch-hhHHHHHHHHHHHHHHHhhh------hHHHHHHHHHHhhhcccchhhH-HHHhhhhcc-ccchhhHHHHHHHHhHHH
Q 011783          112 KP-VIIMGTASVVIFNTLFGLSV------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-EEHQALGLSTVSTAWGIG  182 (477)
Q Consensus       112 r~-~~~~~~~~~~i~~~~~~~~~------~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~-~~~r~~~~~~~~~~~~~g  182 (477)
                      +| -++++.+..++...++-.++      +....++...+.+++......- .++.+|..+ ++||.+..++-....++|
T Consensus        82 fRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g  161 (467)
T COG2211          82 FRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLG  161 (467)
T ss_pred             ccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHH
Confidence            55 56777788888888887776      3455667778888886665444 888888886 789999999999999999


Q ss_pred             HHHHHhHHHHhhhccccCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccC
Q 011783          183 LIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGRE  262 (477)
Q Consensus       183 ~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (477)
                      ..+...+.+.+.....+-....+|+..-  ..+.+...+..+++...++++..++.+..+..              +.+.
T Consensus       162 ~~l~~~~~~plv~~~g~~~~~~g~~~~~--~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~--------------~~~~  225 (467)
T COG2211         162 GLLVAVLFPPLVKLFGGGDKALGYQGTA--LVLGVIGVILLLFCFFNVKERVVETQPTKTGV--------------KLKL  225 (467)
T ss_pred             HHHHHHHHHHHHHHhCCCcchhhHHHHH--HHHHHHHHHHHHHHHHHhhcccCccccCcccc--------------cccH
Confidence            8887777766665433222244444332  11112222222223322222211111111000              2222


Q ss_pred             CchhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011783          263 ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL  342 (477)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~  342 (477)
                      .......++||++...++...+.........+...+|.+..     .|.+.......+.....+.+++.+ +.+++.+|+
T Consensus       226 ~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~-----lg~~~l~~~~~~~~~~~~~l~~~~-~~p~L~~~~  299 (467)
T COG2211         226 KDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYV-----LGDPELFAYLLLLASGAGLLIGLI-LWPRLVKKF  299 (467)
T ss_pred             HHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEE-----cCChHHHHHHHHHHHHHHHHHHHH-hHHHHHHHh
Confidence            33455788999999988888877777766667777666654     677777777777776666666666 899999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCC-------cchhhHHhHHH
Q 011783          343 GPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVD-------QDQRGAANGIA  415 (477)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~  415 (477)
                      |+|++...+.++..++.+.+.+.+..    .....++...+.+++.+...+..+++.+|.++       .+..|...|..
T Consensus       300 gkk~~~~~~~~~~~i~~~~~~f~~~~----~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~  375 (467)
T COG2211         300 GKKKLFLIGLLLLAVGYLLLYFTPAG----SVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGM  375 (467)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhhcCc----chHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHH
Confidence            99999999999999988887776621    12233444455567778888888999988765       56678899999


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHhhhh
Q 011783          416 MTGMSLFKAAGPAGGGALFSWAQKR  440 (477)
Q Consensus       416 ~~~~~~g~~~~~~~~g~l~~~~~~~  440 (477)
                      ..+.-+|.+++..+.|++++..+..
T Consensus       376 tF~~K~g~ala~~~~g~~L~~~Gyv  400 (467)
T COG2211         376 TFFRKLGLALAGFIPGWILGAIGYV  400 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999987544

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.86  E-value=3.9e-20  Score=171.97  Aligned_cols=400  Identities=17%  Similarity=0.205  Sum_probs=248.2

Q ss_pred             ccCCCCchhHHHHHHHHHHHhhhchhchHhHHHHHHHH--hcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcC
Q 011783           33 DTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKD--FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG  110 (477)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~G  110 (477)
                      ++.++.+||.+++..+..++..+..+++.+..-++.++  .+.+.+.      .|++.++..++.+++++..|+...|.+
T Consensus        26 ~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~f------fG~viaa~slg~~i~~liF~~Ws~k~~   99 (488)
T KOG2325|consen   26 LDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATF------FGLVIAASSLGHAIFSLIFGIWSNKTG   99 (488)
T ss_pred             ccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcch------hhHHHHHHHHHHHhcchhhcccccccC
Confidence            34456778999999999999999999998888777777  5556666      999999999999999999999999999


Q ss_pred             C-chhhHHHHHHHHHHHHHH-Hhh---h-hHHHHHHHHHHhhhcccchhhHHHHhhhhccccchhhHHHHHHHHhHHHHH
Q 011783          111 R-KPVIIMGTASVVIFNTLF-GLS---V-NFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLI  184 (477)
Q Consensus       111 r-r~~~~~~~~~~~i~~~~~-~~~---~-~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~  184 (477)
                      + |+.++.+.++..++.++. +..   + .-+.++++|++.|+|.|......+|+++....++|.++++....+..+|..
T Consensus       100 ~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~i  179 (488)
T KOG2325|consen  100 SVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGII  179 (488)
T ss_pred             CcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHH
Confidence            7 889999999999999988 332   3 678999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHhhhccc-cCCccc------ccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchh
Q 011783          185 IGPALGGFLAQPAE-KYPNLF------SSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKE  257 (477)
Q Consensus       185 ~g~~~~~~l~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (477)
                      +||.++..+..... ++.+.-      +-...|......+..++.+.+++.|.++...+++.+.+.       +++.+.+
T Consensus       180 lGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~-------~~~~~~~  252 (488)
T KOG2325|consen  180 LGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVE-------EEKSDIE  252 (488)
T ss_pred             HhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccch-------hhccchh
Confidence            99999888765432 322211      111122111111222333344455555543332221110       0000000


Q ss_pred             hcccCCchhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhh----hHHHHHHHHHHHHHHHHH
Q 011783          258 EEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQM----VGEVLAITGFSLLVFQLS  333 (477)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~~~~~~~~~~~~~  333 (477)
                      +.+..+.+      .+..+.++...+...+......+..+....     ..++++..+    .|...++.++..+...+ 
T Consensus       253 ~~~~~~~d------~~~~~vc~~~~~~~~~~~~~iet~~~~~~m-----~~y~w~~~~av~~~gi~~~~~g~ls~~~~l-  320 (488)
T KOG2325|consen  253 KVKKPKLD------WVAVLVCIFLRFVVNFIATTIETLSSALTM-----VMYGWTGSEAVLYNGITLSISGILSVILLL-  320 (488)
T ss_pred             hhccCChh------HHHHHHHHHHHHHHHHHHHHHHhccchHHH-----HHhccccchHHHhhhhHHHHHHHHHHHHHH-
Confidence            00111111      111222223333323222222222222222     124554444    45555555555555444 


Q ss_pred             HHHHHH-HhhcchhHHHHHHHHHHHHHHHH--HHHHHh------------------------hhhhHHHHHHHHHHHHhh
Q 011783          334 LYPFLE-RILGPIMVARIAGVLTIPLLTSY--PYIAML------------------------SGFGLAFLLNCASVVKNL  386 (477)
Q Consensus       334 ~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------------------------~~~~~~~~~~~~~~~~~~  386 (477)
                      ...... .++.+|+.+..+.........+.  ++....                        .....+..+....+..+.
T Consensus       321 ~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~  400 (488)
T KOG2325|consen  321 LYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGI  400 (488)
T ss_pred             HHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheecc
Confidence            222222 33344555555533333332222  111000                        000111112222233344


Q ss_pred             hhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHH
Q 011783          387 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM  466 (477)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  466 (477)
                      ..........++.++...|++++++.|++......+..++|.+...++...          |++..+.+..+..++...+
T Consensus       401 ~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~----------g~~~v~~~~~~~~l~~~~l  470 (488)
T KOG2325|consen  401 AFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLS----------GPRPVWIILLCLLLVVAAL  470 (488)
T ss_pred             ccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhc----------CccHHHHHHHHHHHHHHHH
Confidence            444455567788899999999999999999999999999999999999888          8888888777666665544


Q ss_pred             H
Q 011783          467 T  467 (477)
Q Consensus       467 ~  467 (477)
                      .
T Consensus       471 ~  471 (488)
T KOG2325|consen  471 W  471 (488)
T ss_pred             H
Confidence            3

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.85  E-value=1.5e-19  Score=162.40  Aligned_cols=359  Identities=14%  Similarity=0.056  Sum_probs=246.9

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhH-HHHHHHHHHHHHHHhhhh---HHHHHHHHHHhhhcccchhhH-H
Q 011783           82 SYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII-MGTASVVIFNTLFGLSVN---FWMAVLTRFLLGSLNGLLGPI-K  156 (477)
Q Consensus        82 ~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~-~~~~~~~i~~~~~~~~~~---~~~l~~~r~l~G~~~g~~~~~-~  156 (477)
                      .+.|...++..+..++.+|+.|.++|+.|+||... ....+..++.++..++++   ++..++.-.+..++.....+. .
T Consensus        58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd  137 (438)
T COG2270          58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD  137 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence            44788999999999999999999999999766544 455555666666666654   444555567777777776776 9


Q ss_pred             HHhhhhccccchhhHHHHHHHHhHHHHHHHHhHH--HHhhhccccCCcc-cccccccc---cccchHHHHHHHHHhhccc
Q 011783          157 AYACEIFREEHQALGLSTVSTAWGIGLIIGPALG--GFLAQPAEKYPNL-FSSESLFG---KFPYFLPCLCISLFAFGET  230 (477)
Q Consensus       157 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--~~l~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~l~~~  230 (477)
                      +++.+..++++-++..++-.....+|..+.-+..  ..+.....++.-. ++....-.   +..+.+..+-..++.+|--
T Consensus       138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~  217 (438)
T COG2270         138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMI  217 (438)
T ss_pred             hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHH
Confidence            9999999998888887777777777776655443  2222111111111 11100000   2223333333444444422


Q ss_pred             cccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccc
Q 011783          231 LHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLN  310 (477)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  310 (477)
                      ...++..+.. +...+.+.+.       -++-..+.++..+++++...++..+++.-.......+...|....     +|
T Consensus       218 ~~v~~~~~~~-~~~~~~l~~g-------~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~-----~g  284 (438)
T COG2270         218 LNVHDAEKIS-SPPPTALRNG-------FKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAAD-----LG  284 (438)
T ss_pred             hccccccccc-ccchHHHHHH-------HHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH-----cC
Confidence            2111111000 0000001110       112234677788888999999999998887777777777777643     89


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHH
Q 011783          311 YSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVS  390 (477)
Q Consensus       311 ~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (477)
                      ++..+..++.....+.++++.+ +.+++.+|+|.|+++..+.++..+..+...+...  ..    ......++.+.+.++
T Consensus       285 ls~~~lll~g~~~~vvA~lg~i-i~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~--~~----~f~i~gll~g~s~G~  357 (438)
T COG2270         285 LSSTELLLIGIALSVVAALGAI-IAGFLDERFGSKPVLMIGLVILSIAALYLIFLEG--EL----DFWILGLLVGTSLGG  357 (438)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCceeehHHHHHHHHHHHHHHHccc--cH----HHHHHHHHHHHhcch
Confidence            9999999999999999999998 8999999999999998888777666555444332  11    233444555677888


Q ss_pred             HHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          391 IITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      ......++..+.+|+++-++.+|+++..+.....+||.+.+.+.+.++         ..+..+....++.+++.+...+
T Consensus       358 ~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg---------~~r~g~~~i~vll~iGl~~L~~  427 (438)
T COG2270         358 AQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG---------SSRAGVLSIIVLLLIGLLLLLR  427 (438)
T ss_pred             HHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc---------chhhHHHHHHHHHHhhHhhEEe
Confidence            999999999999999999999999999999999999999999999884         3456777777788888777666

>PRK11462 putative transporter; Provisional

Probab=99.85  E-value=4.8e-18  Score=164.38  Aligned_cols=361  Identities=14%  Similarity=0.039  Sum_probs=220.1

Q ss_pred             chhHHHHHHHHHHHhhhchhchHhHHH-HHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhh----cCCch
Q 011783           39 PITELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKP  113 (477)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr----~Grr~  113 (477)
                      ++++-+.-.++.+...+........+. ++.+..|+++..      +|.+..+.-+--++.-|+.|.++||    +||||
T Consensus         7 ~~~~k~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~------~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~r   80 (460)
T PRK11462          7 SVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGF------VGTMFLVARALDAISDPCMGLLADRTRSRWGKFR   80 (460)
T ss_pred             cHhHHHhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHH------HHHHHHHHHHHHHHHhhhheehhccCCCCCCCcc
Confidence            334444444555555555555665554 677789999999      9999999999999999999999995    79876


Q ss_pred             h-hHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHhhhcccchhhH-HHHhhhhcc-ccchhhHHHHHHHHhHHHHH
Q 011783          114 V-IIMGTASVVIFNTLFGLSVN------FWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-EEHQALGLSTVSTAWGIGLI  184 (477)
Q Consensus       114 ~-~~~~~~~~~i~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~  184 (477)
                      . ++++.+..+++.+++...++      +..+++...+..++....... .++.+|..+ ++||++..++...+..+|..
T Consensus        81 p~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~  160 (460)
T PRK11462         81 PWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGM  160 (460)
T ss_pred             hhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            5 55676777777766654442      445666666677776665544 889999887 78999999999999999988


Q ss_pred             HHHhHHHHhhhccccCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCc
Q 011783          185 IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT  264 (477)
Q Consensus       185 ~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (477)
                      +++.+...+.....+-....+|+...  ..+.++..+...+....++++.+.+ +  +                +.+.+.
T Consensus       161 ~~~~~~~plv~~~g~~~~~~g~~~~~--~i~~ii~~i~~~i~~~~~kE~~~~~-~--~----------------~~~~~~  219 (460)
T PRK11462        161 LSTVLMMPLVNLIGGDNKPLGFQGGI--AVLSVVAFMMLAFCFFTTKERVEAP-P--T----------------TTSMRE  219 (460)
T ss_pred             HHHHHHHHHHHHhCCCchhhhHHHHH--HHHHHHHHHHHHHHHhcceeccCCC-c--c----------------CCCHHH
Confidence            88887766554221111122333221  0011111111112221111111000 0  0                111223


Q ss_pred             hhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011783          265 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP  344 (477)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  344 (477)
                      ..+..++||.++..+...++.............+|....     .|. +...+.+.....+..+++.. +++++.||+++
T Consensus       220 ~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~-----~g~-~~~~~~~l~~~~i~~iig~~-l~~~l~~r~gk  292 (460)
T PRK11462        220 DLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWI-----LGT-PEVFVAFLTTYCVGNLIGSA-LAKPLTDWKCK  292 (460)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh-----cCC-hHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCh
Confidence            567788899888776666555554444444444444432     232 33345566677777788877 88999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCC-------cchhhHHhHHHHH
Q 011783          345 IMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVD-------QDQRGAANGIAMT  417 (477)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~  417 (477)
                      |+....+..+..+....+.+.+.. .  .... .....+.+++.+...+..+++..|..+       .+..|...+....
T Consensus       293 k~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~-~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f  368 (460)
T PRK11462        293 VTIFWWTNALLAVISLAMFFVPMQ-A--SITM-FVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLF  368 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhchh-H--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHH
Confidence            888765554443333332222211 1  1111 112222344445555666677777665       3444666677778


Q ss_pred             HHHHHHHHhhhHHHHHHHHh
Q 011783          418 GMSLFKAAGPAGGGALFSWA  437 (477)
Q Consensus       418 ~~~~g~~~~~~~~g~l~~~~  437 (477)
                      ...+|.++++.+.|.+++..
T Consensus       369 ~~Klg~alg~~i~g~iL~~~  388 (460)
T PRK11462        369 VLKLGLAFGGALIGWMLAYG  388 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHc
Confidence            89999999999999999875

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.84  E-value=1.8e-17  Score=149.65  Aligned_cols=367  Identities=16%  Similarity=0.066  Sum_probs=249.1

Q ss_pred             HHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcC-----CchhhHH-HHHHHHHHHHHHHhh-----h-
Q 011783           66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-----RKPVIIM-GTASVVIFNTLFGLS-----V-  133 (477)
Q Consensus        66 ~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~G-----rr~~~~~-~~~~~~i~~~~~~~~-----~-  133 (477)
                      .+..|++++..-      .+.+.+...+.. ...+.+|..||+.+     ||..+++ |.+..+.+..+..++     . 
T Consensus         5 VMIvEL~vpA~l------v~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~   77 (403)
T PF03209_consen    5 VMIVELGVPAWL------VALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAES   77 (403)
T ss_pred             hHHHHhccHHHH------HHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccc
Confidence            456788888777      888888877655 46899999999999     8866555 566666655554442     1 


Q ss_pred             -------h-HH--HHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCc
Q 011783          134 -------N-FW--MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN  202 (477)
Q Consensus       134 -------~-~~--~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~  202 (477)
                             . .+  ...+...+.|+|.+...+. .++++|..|+|+|+++.++...+.-+|.+++..+.+.+.+....-|-
T Consensus        78 ~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL  157 (403)
T PF03209_consen   78 GQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERL  157 (403)
T ss_pred             ccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHH
Confidence                   1 22  2344456778888887777 99999999999999999999999999999999999998873221111


Q ss_pred             ccccccccccccchHHHHHHHHHhh--ccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHH
Q 011783          203 LFSSESLFGKFPYFLPCLCISLFAF--GETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSII  280 (477)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (477)
                      .   + ++...  .++...+.++.+  .|.+..+..+.++++                +.+....++++..+|+......
T Consensus       158 ~---~-v~~~~--a~i~~~l~~ia~wg~E~r~~~~~~~~~~~----------------~~~f~~a~~~~~~~~~a~~f~~  215 (403)
T PF03209_consen  158 I---Q-VIQGV--ALIALLLNLIALWGQEPRRSRRAAAAERP----------------RPPFREAWRQVWASPQARRFFV  215 (403)
T ss_pred             H---H-HHHHH--HHHHHHHHHHHHHhcccCCcccccCCCCC----------------CccHHHHHHHHHhCCChhHHHH
Confidence            0   0 11000  011111111212  132222221001100                2223346777778888777665


Q ss_pred             HHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 011783          281 VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLT  360 (477)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  360 (477)
                      ..++.....     ....-.-+|+--+.+|++..+...+....+.+..++-...+.++.+|.++++....+...+.+++.
T Consensus       216 fl~l~t~a~-----~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~  290 (403)
T PF03209_consen  216 FLFLGTLAF-----FMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFA  290 (403)
T ss_pred             HHHHHHHHH-----HhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Confidence            555543322     222333456666669999999999999999999888775555566678888888889888888877


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 011783          361 SYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKR  440 (477)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~  440 (477)
                      .+.......+..   .+....++.|++.+.......+...+..++++.|..+|.....+.++..++..++|.+.|.....
T Consensus       291 lii~a~~~~~~~---~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~  367 (403)
T PF03209_consen  291 LIILAGPLGSPW---LFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRAL  367 (403)
T ss_pred             HHHHHHhcccch---HHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            766665544322   33444455567777777777788888888999999999999999999999999999999976544


Q ss_pred             ccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          441 LDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       441 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      .......+|..+|.+=+++.+++..+...
T Consensus       368 ~~~~~~~aY~~VF~lEa~ll~~a~~ll~~  396 (403)
T PF03209_consen  368 FGNSPALAYGVVFALEAVLLLAALVLLGR  396 (403)
T ss_pred             ccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            43112237889998888887777766554

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.84  E-value=1.1e-17  Score=154.02  Aligned_cols=401  Identities=14%  Similarity=0.113  Sum_probs=251.3

Q ss_pred             hHHHHHHHHHHHhhhchhchHhHHH-HHHHHhc----ccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhc-CCchh
Q 011783           41 TELFSIWIIVLCTALPISSLFPFLY-FMIKDFQ----IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPV  114 (477)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-Grr~~  114 (477)
                      |.++.++...+.+.++++.....+- ++..+++    .++++      ..-+.++|..-.-+...++||++||+ |+|+.
T Consensus        21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~------A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t   94 (498)
T COG3104          21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETH------ATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT   94 (498)
T ss_pred             chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHh------hHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence            6688899999999999887766654 7777777    88887      66677777666668889999999996 99999


Q ss_pred             hHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHhhhcccchhhH-HHHhhhhcccc--chhhHHHHHHHHhHHHHHHHHhH
Q 011783          115 IIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE--HQALGLSTVSTAWGIGLIIGPAL  189 (477)
Q Consensus       115 ~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~  189 (477)
                      ++.|.++..++.++.+.++  +...++++-.+.++|.|..-+. .++++|.+|++  +|-..+++++++.++|+.++|++
T Consensus        95 I~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i  174 (498)
T COG3104          95 IVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPII  174 (498)
T ss_pred             HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHH
Confidence            9999999999999999884  7888999999999999999998 99999999853  58889999999999999999999


Q ss_pred             HHHhhhccccCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccc-h---hh-----------hhh-hhhh-
Q 011783          190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCD-V---SY-----------DAL-ESAS-  252 (477)
Q Consensus       190 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~---~~-----------~~~-~~~~-  252 (477)
                      .+++.+       .++|...|+.........++.....+........+++... .   ..           ... -... 
T Consensus       175 ~~~~~~-------~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  247 (498)
T COG3104         175 TGLLAI-------NYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLN  247 (498)
T ss_pred             HHHHHH-------hhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            999998       5666666632222222233333333322211111111000 0   00           000 0000 


Q ss_pred             -ccch----------------hhcccCCchhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhh
Q 011783          253 -AEVK----------------EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQM  315 (477)
Q Consensus       253 -~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  315 (477)
                       +...                +.....+.. .+.-|-.....+.+...++...+....+.+..|..+....+-+|+ ...
T Consensus       248 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~-~vp  325 (498)
T COG3104         248 QNTFSGVLLVISILIAIIYFAEAFRSPKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGF-EVP  325 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccce-ecC
Confidence             0000                000001100 111111112222233333333333334445555554322222332 233


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----h--hHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHH
Q 011783          316 VGEVLAITGFSLLVFQLSLYPFLERILGP-----I--MVARIAGVLTIPLLTSYPYIAML----SGFGLAFLLNCASVVK  384 (477)
Q Consensus       316 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  384 (477)
                      .+..-+.+.+..++.++ +..++-.+.++     +  .-..++..+++.+++.+......    .+..+....+...++.
T Consensus       326 ~~~fQslNp~~Iii~~p-I~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~  404 (498)
T COG3104         326 PAWFQSLNPFFIILFSP-ILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQ  404 (498)
T ss_pred             HHHHHhhCHHHHHHHHH-HHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHH
Confidence            46677777777777776 44444444221     1  22335555666665555544111    2223445566667777


Q ss_pred             hhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHH------HHHHhhhhccccCCCCchHHHHHHHH
Q 011783          385 NLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA------LFSWAQKRLDASFLPGSQMVFFVLNV  458 (477)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~------l~~~~~~~~~~~~~~g~~~~~~~~~~  458 (477)
                      +++.-...|...+++.+..|+...+..++........|+.++..+++.      ..+..          .....|...+.
T Consensus       405 s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~----------~~~~~F~~~g~  474 (498)
T COG3104         405 SFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAF----------IEGRVFGTIGV  474 (498)
T ss_pred             HHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhh----------hhhhhHHHHHH
Confidence            899999999999999999999999999999888888888888777663      22222          34456666666


Q ss_pred             HHHHHHHHH
Q 011783          459 VEAIGVLMT  467 (477)
Q Consensus       459 ~~~~~~~~~  467 (477)
                      ..++..+..
T Consensus       475 v~i~~~~~~  483 (498)
T COG3104         475 VAIVIGILL  483 (498)
T ss_pred             HHHHHHHHH
Confidence            655554443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.82  E-value=1.7e-17  Score=157.01  Aligned_cols=369  Identities=19%  Similarity=0.247  Sum_probs=241.7

Q ss_pred             HHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHH
Q 011783           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (477)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i  124 (477)
                      ...+-.+...+......+..+.....++.+.... .....+.-.....+...+.++..|.++||+|||..+.+......+
T Consensus        26 ~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~-~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l  104 (463)
T KOG2816|consen   26 LLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLE-NGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTIL  104 (463)
T ss_pred             HHHHHHHHHHhcCcchhhhhhhhhcccccCccch-hhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHH
Confidence            4444555555555555566666666665544331 111123332233678889999999999999999999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhcccc---hhhHHHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCC
Q 011783          125 FNTLFGLSVNFWMAVLTRFLLGSLNGL---LGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (477)
Q Consensus       125 ~~~~~~~~~~~~~l~~~r~l~G~~~g~---~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~  201 (477)
                      ..+...+..  |++++   +.|+..+.   .....++++|....++|...+|+.+..+..+..++|.+++.+..      
T Consensus       105 ~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~------  173 (463)
T KOG2816|consen  105 PALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK------  173 (463)
T ss_pred             hHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------
Confidence            988888766  44444   55654333   33349999999999999999999999999999999999999988      


Q ss_pred             cccccccccc-cccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHH
Q 011783          202 NLFSSESLFG-KFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSII  280 (477)
Q Consensus       202 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (477)
                       ..+....+. .........+...+.+||+..+++.++......  +..   ....++..+.....++.-.+|..+..+.
T Consensus       174 -~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~r~~l~l~l  247 (463)
T KOG2816|consen  174 -FLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLREL--TPG---SLDSSHVADAFQSLTKVGPDRLLLLLLL  247 (463)
T ss_pred             -hcCchHHHHHHHHHHHHHHHHHhhccccccCcccccccccccc--CCC---cccchhhhhhhhhhcccCCCccchHHHH
Confidence             333333331 111123333445566777766554432110000  000   0000001111112222223344444333


Q ss_pred             HHHHHHhhhhh-hHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 011783          281 VYCVFSLHDMA-YSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLL  359 (477)
Q Consensus       281 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  359 (477)
                      ..+........ .......|+.     ..++++..+.+.+.+.......+++.+..+.+.+.++.++....|.....+..
T Consensus       248 ~~~~~~~~~~~~~~~~~~~yl~-----~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~  322 (463)
T KOG2816|consen  248 VAFLSSLPEAGGASDVLLLYLK-----AKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQL  322 (463)
T ss_pred             HHHHHHHHHhcCceeEEEEEEe-----eecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHH
Confidence            33332222211 1112223333     34899999999999999999999999788899999999998889988888888


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 011783          360 TSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQK  439 (477)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~  439 (477)
                      ..+.+....+..  +.....     ........|...+..+..++++++|+++++...+..+...++|.+.+.++..+..
T Consensus       323 ~~~af~~~~w~~--~~~~v~-----~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t~~  395 (463)
T KOG2816|consen  323 LLFAFATETWMM--FAAGVV-----VALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALTLD  395 (463)
T ss_pred             HHHHHhccchhh--hHHHHH-----HHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            888776653321  111111     2345677888899999999999999999999999999999999999999988866


Q ss_pred             hccc
Q 011783          440 RLDA  443 (477)
Q Consensus       440 ~~~~  443 (477)
                      ..++
T Consensus       396 ~~~~  399 (463)
T KOG2816|consen  396 DLPG  399 (463)
T ss_pred             hccc
Confidence            6544

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.82  E-value=1.6e-18  Score=156.62  Aligned_cols=369  Identities=12%  Similarity=0.068  Sum_probs=241.0

Q ss_pred             CCchhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhH
Q 011783           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (477)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~  116 (477)
                      +++|-.+....+..+.+.+..-.+.+...+....|+ +.+.      .-|+.-+|.+.+....+++-|+.||+|-|...+
T Consensus        41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~------~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~l  113 (480)
T KOG2563|consen   41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSA------ADWLSMIYMVVSVPFGFAAMWILDKFGLRTALL  113 (480)
T ss_pred             hhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHH------HHHHHHHHHHHHHHHhhHHHHhhcccchHHHHH
Confidence            334444445556666666666677777777777888 5555      789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhh------hHH--HHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHH
Q 011783          117 MGTASVVIFNTLFGLSV------NFW--MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGP  187 (477)
Q Consensus       117 ~~~~~~~i~~~~~~~~~------~~~--~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  187 (477)
                      ++..+.+++..+-..+.      .++  ....+..+.+.++-..... ..+..-|++++||..+..+-.++..+|.++|.
T Consensus       114 lgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~  193 (480)
T KOG2563|consen  114 LGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGF  193 (480)
T ss_pred             HHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHh
Confidence            99999999998876653      344  5666777777776666666 56677899999999999999999999999999


Q ss_pred             hHHHHhhhccccCCccccccc--ccccccchHHHHH-HHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCc
Q 011783          188 ALGGFLAQPAEKYPNLFSSES--LFGKFPYFLPCLC-ISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT  264 (477)
Q Consensus       188 ~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (477)
                      ++...+.....+-+. ..|.-  .+.....+....+ +..+..++.|+.++......+               .+.+-..
T Consensus       194 llppilV~~~~~~~~-~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~---------------~~~~f~~  257 (480)
T KOG2563|consen  194 LLPPILVPSSKDSED-NSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAAL---------------QDASFPK  257 (480)
T ss_pred             hccceecCCCCCcch-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhh---------------hcCcHHH
Confidence            999988875422221 22211  1200001111111 111111122211111100000               0122456


Q ss_pred             hhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011783          265 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP  344 (477)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  344 (477)
                      +.++.++|+++....+.+........+....+..-+      ...|++...+|.......+++++++. +.+.+.||.+.
T Consensus       258 si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l------~~sgY~~~~aG~ig~l~iv~Gmlga~-~~gii~Dktk~  330 (480)
T KOG2563|consen  258 SIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLAL------CPSGYEGVFAGYIGALMIVAGMLGAL-ASGIIADKTKK  330 (480)
T ss_pred             HHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhcc------ccccCCccccchhHHHHHHHHHHHHH-HHHhhhhhhhh
Confidence            788999999998887777765544444333222111      12466667889999999999999998 88888888764


Q ss_pred             hh-HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHH
Q 011783          345 IM-VARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFK  423 (477)
Q Consensus       345 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~  423 (477)
                      -+ ..+.......++...+.....  .....+.+.....+.+++..+..|....+..|..-|..-++..|+.+..+++-+
T Consensus       331 fk~~~~v~~~~~~v~~~~l~~~t~--~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~  408 (480)
T KOG2563|consen  331 FKLTTLVLYLFALVGTLMLLTCTL--FLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFG  408 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc--cCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHH
Confidence            33 333333333333222222222  111222344444455677788888888888887666778888999999999999


Q ss_pred             HHhhhHHHHHHHHh
Q 011783          424 AAGPAGGGALFSWA  437 (477)
Q Consensus       424 ~~~~~~~g~l~~~~  437 (477)
                      ++-.++.+...+..
T Consensus       409 ~~~~~~~~~~~~~~  422 (480)
T KOG2563|consen  409 VILVFIMGILAEDL  422 (480)
T ss_pred             HHHHHHHHHHhhcc
Confidence            88888877777655

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.72  E-value=5.3e-19  Score=171.60  Aligned_cols=382  Identities=16%  Similarity=0.131  Sum_probs=3.0

Q ss_pred             HHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHH
Q 011783           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (477)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i  124 (477)
                      .+.+..+...+..+.....++.+.+.|+++..+      .|++.+.+-++..+..++..++.+|..|-|.+-+|.++.++
T Consensus         7 ~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~------~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~   80 (539)
T PF03137_consen    7 FLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQ------SGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGL   80 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHH
Confidence            445556666666677778889999999999999      99999999999999999999999999898999999999999


Q ss_pred             HHHHHHhhh--------------------------------------------------hHHHHHHHHHHhhhcccchhh
Q 011783          125 FNTLFGLSV--------------------------------------------------NFWMAVLTRFLLGSLNGLLGP  154 (477)
Q Consensus       125 ~~~~~~~~~--------------------------------------------------~~~~l~~~r~l~G~~~g~~~~  154 (477)
                      +++++++-+                                                  -+..++++.++.|+|....++
T Consensus        81 g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~t  160 (539)
T PF03137_consen   81 GSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYT  160 (539)
T ss_dssp             -----------------------------------------------------------------------SSS------
T ss_pred             HHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcc
Confidence            998876510                                                  135678899999999999999


Q ss_pred             H-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhcccc---------------CCcccccccccccccchHH
Q 011783          155 I-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK---------------YPNLFSSESLFGKFPYFLP  218 (477)
Q Consensus       155 ~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~  218 (477)
                      . .+|+-|.+++++-+..+|+......+|.++|.++|+.+.....+               -||.-.|=..|........
T Consensus       161 LG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~  240 (539)
T PF03137_consen  161 LGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLF  240 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence            8 99999999999999999999999999999999999987753211               1222211111111222222


Q ss_pred             HHHHHHHhhccccccCCCCCCccchhh---hhh-hhhhccc------hhhcccCCchhhhhhcchhhHHHHHHHHHHHhh
Q 011783          219 CLCISLFAFGETLHRHNDDDDSCDVSY---DAL-ESASAEV------KEEEGREATPKKSLLKNWPLMSSIIVYCVFSLH  288 (477)
Q Consensus       219 ~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (477)
                      ...+.++.+|+..+..++.+++.+...   ++. .+...+.      .+..++-....+++++||.+....+...+....
T Consensus       241 l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~  320 (539)
T PF03137_consen  241 LSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFI  320 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence            223333445544333311111111000   000 0000010      011233455678899999999999998888888


Q ss_pred             hhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHH---HH
Q 011783          289 DMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG--PIMVARIAGVLTIPLLTS---YP  363 (477)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~---~~  363 (477)
                      ..++..+.|-|++..     ++.++.+++++.....+.+...+.+++|++.+|++  .|..+....+...+..+.   ..
T Consensus       321 ~~G~~tF~pKylE~Q-----F~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~  395 (539)
T PF03137_consen  321 VSGFATFLPKYLESQ-----FGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLF  395 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHH-----hCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888887754     89999999998887777665555559999999976  444544444444333322   10


Q ss_pred             HH-----------HHh----------------------------h-----h-hhHHHHHHHHHHHHhhhhHHHHhHHHHH
Q 011783          364 YI-----------AML----------------------------S-----G-FGLAFLLNCASVVKNLLSVSIITGLFIL  398 (477)
Q Consensus       364 ~~-----------~~~----------------------------~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (477)
                      +.           ...                            .     . -..+..+.+..++..+............
T Consensus       396 ~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i  475 (539)
T PF03137_consen  396 FLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLI  475 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchhee
Confidence            00           000                            0     0 0112223333333334444455555566


Q ss_pred             HhhcCCcchhhHHhHHHHHH-HHHHHHHhhhHHHHHHHHh
Q 011783          399 QNRAVDQDQRGAANGIAMTG-MSLFKAAGPAGGGALFSWA  437 (477)
Q Consensus       399 ~~~~~~~~~~g~~~g~~~~~-~~~g~~~~~~~~g~l~~~~  437 (477)
                      .-+.+|+++|+.+.|+...+ +-+|.+-||.+.|.+.|..
T Consensus       476 ~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  476 TLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             ----------------------------------------
T ss_pred             eeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence            67889999999999999875 5788899999999999865

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.71  E-value=3.5e-16  Score=151.70  Aligned_cols=384  Identities=16%  Similarity=0.144  Sum_probs=273.7

Q ss_pred             HHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHH
Q 011783           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (477)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~  122 (477)
                      +..+.+..+...+..+.+...+..+.+.|+++.++      .|++.+.+-++..+...+..+..-|.-|-+.+-+|.+++
T Consensus        99 l~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~------sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m  172 (735)
T KOG3626|consen   99 LVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQ------SGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLM  172 (735)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCc------ceeEeeecccchhhhhHhHHHhccccCccceeeechhHH
Confidence            33556667777777778888889999999999999      999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhh-------------------h--------------------------------H-HHHHHHHHHhhhccc
Q 011783          123 VIFNTLFGLSV-------------------N--------------------------------F-WMAVLTRFLLGSLNG  150 (477)
Q Consensus       123 ~i~~~~~~~~~-------------------~--------------------------------~-~~l~~~r~l~G~~~g  150 (477)
                      +++++++++-+                   +                                + ..++++.++.|+|..
T Consensus       173 ~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~T  252 (735)
T KOG3626|consen  173 GLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGAT  252 (735)
T ss_pred             HHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCC
Confidence            99999987620                   0                                2 256778899999999


Q ss_pred             chhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccC------------CcccccccccccccchH
Q 011783          151 LLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY------------PNLFSSESLFGKFPYFL  217 (477)
Q Consensus       151 ~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~------------~~~~~~~~~~~~~~~~~  217 (477)
                      ...+. .+|+-|...+++-+..+|+......+|.++|-++|+++......+            ||.--|-..|.....+.
T Consensus       253 pi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~  332 (735)
T KOG3626|consen  253 PIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALL  332 (735)
T ss_pred             CCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHH
Confidence            99998 999999999999999999999999999999999999987643322            33333322221222223


Q ss_pred             HHHHHHHHhhccccccCCCCCCccchhhhhhhhh-hccc---hhhcccCCchhhhhhcchhhHHHHHHHHHHHhhhhhhH
Q 011783          218 PCLCISLFAFGETLHRHNDDDDSCDVSYDALESA-SAEV---KEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYS  293 (477)
Q Consensus       218 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (477)
                      ....+.++++|...+...++++..+....+.++. .++.   .+..++-+...+++++||.+...++...+......++.
T Consensus       333 ~~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~  412 (735)
T KOG3626|consen  333 LFSAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYI  412 (735)
T ss_pred             HHHHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHH
Confidence            3333444556654443222111111000000000 0000   01122345567889999999999999999999999999


Q ss_pred             HHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHHHH---HH---
Q 011783          294 EIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG--PIMVARIAGVLTIPLLTSYP---YI---  365 (477)
Q Consensus       294 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~---~~---  365 (477)
                      .+.|=|+.+.     +|.++..+..++...++.....+.+++|++.+|+.  .|....+..+...+.++.+.   +.   
T Consensus       413 tFlPKyLE~Q-----fg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~igC~  487 (735)
T KOG3626|consen  413 TFLPKYLETQ-----FGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFIGCE  487 (735)
T ss_pred             HhhHHHHHHH-----cCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEecCC
Confidence            9999988865     99999999999988888887777779999999876  45555555544444433311   10   


Q ss_pred             ---------------------------------------------------------------H------------H---
Q 011783          366 ---------------------------------------------------------------A------------M---  367 (477)
Q Consensus       366 ---------------------------------------------------------------~------------~---  367 (477)
                                                                                     .            .   
T Consensus       488 ~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~~~~  567 (735)
T KOG3626|consen  488 SSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVPTNK  567 (735)
T ss_pred             CCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeecccccccccc
Confidence                                                                           0            0   


Q ss_pred             -hh----------h-hhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHH-HHHHHHHhhhHHHHHH
Q 011783          368 -LS----------G-FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTG-MSLFKAAGPAGGGALF  434 (477)
Q Consensus       368 -~~----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~~g~~~~~~~~g~l~  434 (477)
                       ..          . ......+++...+..+......+..+.++.+.+|+|+|.-++|+..++ +-+|.+-+|++.|++.
T Consensus       568 ~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~I  647 (735)
T KOG3626|consen  568 NGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVI  647 (735)
T ss_pred             CCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhH
Confidence             00          0 111233344444444555555566667778899999999999999874 5788899999999999


Q ss_pred             HHh
Q 011783          435 SWA  437 (477)
Q Consensus       435 ~~~  437 (477)
                      |..
T Consensus       648 D~t  650 (735)
T KOG3626|consen  648 DTT  650 (735)
T ss_pred             hhH
Confidence            964

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.59  E-value=8.6e-13  Score=117.76  Aligned_cols=268  Identities=16%  Similarity=0.146  Sum_probs=158.9

Q ss_pred             hhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhh
Q 011783           53 TALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS  132 (477)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~  132 (477)
                      ...+..+-+|.+-.+-+++|.+..|      ++.+....+....+..++.|.++||+|||+.-+..+++.+++++.. ..
T Consensus        46 a~~aDWLQGpY~Y~LY~~yg~~~~q------Ia~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k-~~  118 (354)
T PF05631_consen   46 AMAADWLQGPYLYALYESYGFSEHQ------IAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK-HS  118 (354)
T ss_pred             HHHHHHhhcchhHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-hc
Confidence            3445566678777777899999999      9999999999999999999999999999999999999999888644 56


Q ss_pred             hhHHHHHHHHHHhhhcccchhhH-HH-Hhhhhccc----cchhhHHHHHH-HHhHHHHHHHHhHHHHhhhccccCCcccc
Q 011783          133 VNFWMAVLTRFLLGSLNGLLGPI-KA-YACEIFRE----EHQALGLSTVS-TAWGIGLIIGPALGGFLAQPAEKYPNLFS  205 (477)
Q Consensus       133 ~~~~~l~~~r~l~G~~~g~~~~~-~~-~i~~~~~~----~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~~~~~~~~~  205 (477)
                      ++++.++++|++.|++......+ -+ ++.|.-..    +..+.-++... ...++-.+++.+++-++.+..     .++
T Consensus       119 ~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~-----~~g  193 (354)
T PF05631_consen  119 SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWF-----GFG  193 (354)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHh-----CCC
Confidence            89999999999999999987776 55 45665332    22223222222 122233334444444444411     112


Q ss_pred             cccccc-cccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHHHHHH
Q 011783          206 SESLFG-KFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCV  284 (477)
Q Consensus       206 ~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (477)
                      -.+.|. ..++.++..+++....+|......+    .+..              ..+.....+.+.+||+++.+.+...+
T Consensus       194 ~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~----~~~~--------------~~~~~~a~~~i~~d~ril~LG~~qsl  255 (354)
T PF05631_consen  194 PVAPFDAAIVLLAVAAVLILKTWPENYGDTSS----SSSL--------------SGSFREAWRAILSDPRILLLGLIQSL  255 (354)
T ss_pred             CcchHHHHHHHHHHHHHHHHhcccccCCCccc----ccch--------------HHHHHHHHHHHHcCchhHHHHHHHHH
Confidence            222221 1111111111111122233221111    1100              11122356677888999888888887


Q ss_pred             HHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 011783          285 FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIP  357 (477)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  357 (477)
                      +-...+.+   ...|  .|.... .+ ...-.|++++.+.+..++|+.+....+.++......+.....+..+
T Consensus       256 FE~smy~F---VflW--tPaL~~-~~-~~~P~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~~v~~~aa~  321 (354)
T PF05631_consen  256 FEGSMYLF---VFLW--TPALDP-DD-EELPLGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLLRYVFAVAAV  321 (354)
T ss_pred             HHHHHHHh---eeee--eceecC-CC-CCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            76554443   2223  232221 11 1233799999999999999983334455554444444444444333

>TIGR00889 2A0110 nucleoside transporter

Probab=99.59  E-value=1.3e-14  Score=139.09  Aligned_cols=185  Identities=12%  Similarity=0.126  Sum_probs=130.9

Q ss_pred             HHHHHHHHhhhchhchHhHHHHHHHHhcccccch--hhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHH
Q 011783           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREE--DIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (477)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~  122 (477)
                      .+.+..++............+.+.++.|.++...  ......+...++..++..++.++.|+++||+|||+++..+.++.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~  291 (418)
T TIGR00889       212 IFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAW  291 (418)
T ss_pred             eHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            3444444444444444566676777777554210  00011799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhh----hHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHH-HHhHHHHHHHHhHHHHhhhc
Q 011783          123 VIFNTLFGLSV----NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQP  196 (477)
Q Consensus       123 ~i~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~  196 (477)
                      +++..+.....    +++.+++.+++.|++.+...+. ..++.|++|+++|++++++.+ ...++|..+||+++|.+.+.
T Consensus       292 ~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~  371 (418)
T TIGR00889       292 ALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEK  371 (418)
T ss_pred             HHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            88877666532    3466788899999998887777 899999999999999999997 67899999999999999884


Q ss_pred             cccCCcccccccccc-cccchHHHHHHHHHhhccc
Q 011783          197 AEKYPNLFSSESLFG-KFPYFLPCLCISLFAFGET  230 (477)
Q Consensus       197 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~  230 (477)
                      ..+ ...++|+..|. ...+.+...++..++++|+
T Consensus       372 ~g~-~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       372 MFA-YGTFDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             hcc-ccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            321 00135665552 1112233334444555555

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.59  E-value=2.5e-13  Score=129.84  Aligned_cols=384  Identities=15%  Similarity=0.165  Sum_probs=225.2

Q ss_pred             HhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcC-----CchhhHHHHHHHHHHHHHHHhh---
Q 011783           61 FPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-----RKPVIIMGTASVVIFNTLFGLS---  132 (477)
Q Consensus        61 ~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~G-----rr~~~~~~~~~~~i~~~~~~~~---  132 (477)
                      .+..|.+.+++|.++.+      .....+...+... ..+++|.++|-+-     ||+-++++.++.+++.+..+..   
T Consensus        10 ~~~~~~l~~~l~ls~~~------~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~   82 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQ------LQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS   82 (433)
T ss_pred             HHHHHHHHHHcCCCHHH------HHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc
Confidence            45567889999999999      8888888888775 4589999999863     5556777777776666655553   


Q ss_pred             -hhHHHHHHHHHHhhhcccchhhH-HHHhhhhcc--ccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCccccccc
Q 011783          133 -VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR--EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSES  208 (477)
Q Consensus       133 -~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~  208 (477)
                       .+.....+.-++..+|.+....+ -+++.|...  +++|+...+.......+|.+++..++|.+.+. .++++.|.+..
T Consensus        83 ~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~-~~~~~~f~i~~  161 (433)
T PF03092_consen   83 ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS-FGPQGVFLISA  161 (433)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc-CCCeEEehHHH
Confidence             35666666677778888887776 888888874  34588889999999999999999999999873 33444443322


Q ss_pred             ccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHH-HHHHHHh
Q 011783          209 LFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSII-VYCVFSL  287 (477)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  287 (477)
                      .+     .....+..++..+| ....+.. +..... ++....   .....++.....++.++++.++...+ ..+++..
T Consensus       162 ~~-----~~l~~~~~~~~~~e-~~~~~~~-~~~~~~-~~~~~~---~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~  230 (433)
T PF03092_consen  162 AL-----PLLMLIVALFLLEE-RKVRPAD-EVFSFG-KEEVPC---LFGSFREQLSELWRALQQRAIWQPILFFIFFFNL  230 (433)
T ss_pred             HH-----HHHHHHHHHHhhhh-ccccccc-hhhccc-ccccch---hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            22     12222233333444 1111111 000000 000000   00001112235566777788887666 3333222


Q ss_pred             hhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 011783          288 HDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAM  367 (477)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (477)
                      ....-.. ...|...... .+.++++...+.+..+..++.+++.. +....-.+.+-|+++....++..+..+.-.....
T Consensus       231 ~~~~~~a-~~fy~~~~~~-~gp~fs~~f~~~~~~vg~~~~l~g~~-~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~  307 (433)
T PF03092_consen  231 PPSISSA-SSFYFQTDAL-GGPHFSPSFYGTLSIVGSIASLLGIL-LYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVT  307 (433)
T ss_pred             ccCCCCc-cEEEEEeccc-cccccCHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEE
Confidence            2111111 0112221111 13458898888888777777777766 4444444556666666655554443222111100


Q ss_pred             hhh-----hhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcc
Q 011783          368 LSG-----FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLD  442 (477)
Q Consensus       368 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~  442 (477)
                      ..+     ... .....-..+........+-....+.++..|+..-|+.+++..++.++|..++..++..+.+..+-...
T Consensus       308 ~~n~~~Gi~d~-~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~  386 (433)
T PF03092_consen  308 RWNLDLGIPDQ-WFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRD  386 (433)
T ss_pred             EEeeeeCcCCe-EEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence            000     001 11111222223344455555667789999999999999999999999999999999999888753222


Q ss_pred             ccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          443 ASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       443 ~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      .  +.+.....++..++.++...+...
T Consensus       387 ~--f~~l~~lili~~~~~ll~l~ll~l  411 (433)
T PF03092_consen  387 D--FSNLWLLILICSVIQLLPLPLLFL  411 (433)
T ss_pred             c--ccchHHHHHHHHHHHHHHHHHHHH
Confidence            2  224555666666666555554433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.57  E-value=8.2e-14  Score=136.73  Aligned_cols=174  Identities=14%  Similarity=0.184  Sum_probs=121.0

Q ss_pred             HHHhhhchhchHhHHHHHH-HHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHH
Q 011783           50 VLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL  128 (477)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~  128 (477)
                      .+......+.....+|.+. +++|.+..+      .++..+...++..++.+..|+++||+|||+++..+.++..+....
T Consensus       259 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~  332 (490)
T PRK10642        259 VIATNVTYYMLLTYMPSYLSHNLHYSEDH------GVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIP  332 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            3444445555666777655 567888877      778888889999999999999999999999988887654443322


Q ss_pred             ---HHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCccc
Q 011783          129 ---FGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF  204 (477)
Q Consensus       129 ---~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~  204 (477)
                         ...+++...+++.|++.|++.+..... ..++.|.+|++.|+++++.......++..++|.+.+++.+...+|+..+
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~  412 (490)
T PRK10642        333 AFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPA  412 (490)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHH
Confidence               223446778888999998876665554 7888999999999999997544455667789999998876433333222


Q ss_pred             ccccccccccchHHHHHHHHHhhccccccCC
Q 011783          205 SSESLFGKFPYFLPCLCISLFAFGETLHRHN  235 (477)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  235 (477)
                      ...      ....+..++..+++||++++..
T Consensus       413 ~~~------~~~~~i~~~~~~~~pes~~~~~  437 (490)
T PRK10642        413 YYL------MVVAVIGLITGVTMKETANRPL  437 (490)
T ss_pred             HHH------HHHHHHHHHHHHHhccccCCCC
Confidence            211      1123333444556799987643

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.54  E-value=1.1e-13  Score=131.65  Aligned_cols=155  Identities=13%  Similarity=0.048  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHH
Q 011783           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (477)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~  122 (477)
                      ++.+....+...+.........+.+.++++.++.+      .+++.+.+.++..+++++.|++.||+|||+.+..+.++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~  280 (377)
T TIGR00890       207 FWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGF------LVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGIS  280 (377)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            33333344444444444445566677888988877      899999999999999999999999999999999999998


Q ss_pred             HHHHHHHHhhhhH--HHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhcccc
Q 011783          123 VIFNTLFGLSVNF--WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (477)
Q Consensus       123 ~i~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  199 (477)
                      .++.++..+.++.  ..++...++.|++.+...+. .+++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+    
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~----  356 (377)
T TIGR00890       281 AVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT----  356 (377)
T ss_pred             HHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh----
Confidence            8888877776643  33456677888887776666 8899999999999999999999999999999999999987    


Q ss_pred             CCccccccccc
Q 011783          200 YPNLFSSESLF  210 (477)
Q Consensus       200 ~~~~~~~~~~~  210 (477)
                         .++|+..|
T Consensus       357 ---~~g~~~~f  364 (377)
T TIGR00890       357 ---EIGFEYTF  364 (377)
T ss_pred             ---hhchhhHH
Confidence               45555554

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.54  E-value=1.2e-13  Score=138.70  Aligned_cols=111  Identities=12%  Similarity=0.103  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhc
Q 011783           85 GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIF  163 (477)
Q Consensus        85 g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~  163 (477)
                      .+...+..++..++.++.|+++||+|||++++++.++.+++.++.+++++...+++.+++.|++.+...+. .++++|++
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~  677 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            44566777899999999999999999999999999999999999999988888888899988877766666 99999999


Q ss_pred             cccchhhHHHHHHHHhHHHHHHHHhHHHHhhh
Q 011783          164 REEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (477)
Q Consensus       164 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (477)
                      |.++|++++|+.++...+|.++||.+++.+..
T Consensus       678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~  709 (742)
T TIGR01299       678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVG  709 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998876

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.54  E-value=7.6e-14  Score=134.08  Aligned_cols=143  Identities=21%  Similarity=0.268  Sum_probs=120.4

Q ss_pred             HHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHH
Q 011783           48 IIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNT  127 (477)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~  127 (477)
                      ...+............+|.+.++.|.+..+      .+++.+.+.++..++.++.|+++||+|||+.+..+.+...++.+
T Consensus       227 ~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~  300 (406)
T PRK11551        227 ISYFFTLIVLYFLLNWLPSLLVGQGLSRSQ------AGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLA  300 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            333333344444555678888889999888      99999999999999999999999999999999888777777777


Q ss_pred             HHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhc
Q 011783          128 LFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (477)
Q Consensus       128 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  196 (477)
                      +..+.++.+.+.+.-++.|++.+...+. .+++.|.+|+++|++++|+.+....+|..+||.++|.+.++
T Consensus       301 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  370 (406)
T PRK11551        301 ALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLAL  370 (406)
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhcc
Confidence            7777778888888888888876666666 89999999999999999999999999999999999999874

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.54  E-value=2.4e-13  Score=129.69  Aligned_cols=140  Identities=17%  Similarity=0.238  Sum_probs=112.6

Q ss_pred             hhchHhHHHH-HHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhhhhH
Q 011783           57 ISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF  135 (477)
Q Consensus        57 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~  135 (477)
                      ...+....|. +.+++|.++.+      .+++.+...++..++.++.|+++||+|||+.+..+.....+........++.
T Consensus       232 ~~~~~~~~p~~l~~~~~~~~~~------~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~  305 (393)
T PRK15011        232 NSLYIINMPLFIINELHLPEKL------AGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSP  305 (393)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            3444455664 55678999888      8988888888888899999999999999998888776666655555567788


Q ss_pred             HHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCccccccccc
Q 011783          136 WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF  210 (477)
Q Consensus       136 ~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~  210 (477)
                      +.+++.+++.+++.|...+. ..+..|.+|+ +|++++++++....+|..+||.++|.+.+       .++|+..+
T Consensus       306 ~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~-------~~g~~~~~  373 (393)
T PRK15011        306 AILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAE-------IWNYHAVF  373 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhHHHH
Confidence            88888999988887776665 7788898884 69999999999999999999999999988       44565554

>PRK10054 putative transporter; Provisional

Probab=99.52  E-value=2.2e-12  Score=122.90  Aligned_cols=173  Identities=12%  Similarity=0.101  Sum_probs=133.2

Q ss_pred             hhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 011783          273 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  352 (477)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  352 (477)
                      +.++...+..++..........+++.|+.+.     +|++..+.|+..+...+...+.++ ..|++.||+|+|+.+..+.
T Consensus         7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~-----~g~s~~~~g~~~s~~~~~~~~~~~-~~G~l~Dr~g~k~~~~~~~   80 (395)
T PRK10054          7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQ-----YSLSVDLIGYAMTIALTIGVVFSL-GFGILADKFDKKRYMLLAI   80 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcCcchhHHHHH
Confidence            4466666777777777677777778777643     899999999999999999999988 8999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHH
Q 011783          353 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA  432 (477)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~  432 (477)
                      .+..++.+.+.+.++.     +.. .....+.+.......+....+..|..|+++|+++.|+.+...++|.+++|.+.+.
T Consensus        81 ~~~~~~~~~~~~~~~~-----~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~  154 (395)
T PRK10054         81 TAFASGFIAIPLVNNV-----TLV-VLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTL  154 (395)
T ss_pred             HHHHHHHHHHHHHhHH-----HHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8777777666554431     112 2222223344455667778888999999999999999999999999999999998


Q ss_pred             HHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHh
Q 011783          433 LFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF  468 (477)
Q Consensus       433 l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  468 (477)
                      +.+ .          +|+..|.+.+++.+++.+...
T Consensus       155 l~~-~----------g~~~~f~~~~~~~~i~~i~~~  179 (395)
T PRK10054        155 LVM-Q----------SINLPFWLAAICSAFPLVFIQ  179 (395)
T ss_pred             HHH-h----------ccCcHHHHHHHHHHHHHHHHH
Confidence            874 4          688899888877777655443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.51  E-value=6.9e-14  Score=135.72  Aligned_cols=159  Identities=17%  Similarity=0.173  Sum_probs=125.2

Q ss_pred             hHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhc--CCchhhHH-
Q 011783           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVIIM-  117 (477)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~--Grr~~~~~-  117 (477)
                      +.++......++..+........+|.+.+++|.+..+      .+++.++..++..+++++.|+++||.  ++|+...+ 
T Consensus       241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  314 (455)
T TIGR00892       241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYE------AAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFS  314 (455)
T ss_pred             chHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHH
Confidence            3345555555555566556666778777889999888      99999999999999999999999984  33433333 


Q ss_pred             -HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhh
Q 011783          118 -GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (477)
Q Consensus       118 -~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (477)
                       +.++.+++.++....++++.+++.+++.|++.+...+. .+++.|.+|++++++.+++++....+|..+||.++|.+.+
T Consensus       315 ~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~  394 (455)
T TIGR00892       315 FALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVD  394 (455)
T ss_pred             HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeeh
Confidence             34444555556667889999999999999998888777 8999999999999999999999999999999999999988


Q ss_pred             ccccCCcccc
Q 011783          196 PAEKYPNLFS  205 (477)
Q Consensus       196 ~~~~~~~~~~  205 (477)
                      ...+|++.|.
T Consensus       395 ~~g~~~~~f~  404 (455)
T TIGR00892       395 ATKNYKYIFY  404 (455)
T ss_pred             hcCCcchHHH
Confidence            5444554443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.51  E-value=3.7e-14  Score=114.19  Aligned_cols=108  Identities=32%  Similarity=0.582  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhcccc
Q 011783           88 GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE  166 (477)
Q Consensus        88 ~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~  166 (477)
                      .+.+.++..+++++.|++.||+|||+.+..+.....++.+.....++++.+.+.+++.|++.+...+. .+++.|.+|++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            44567788899999999999999999999999999999998888899999999999999998888777 89999999999


Q ss_pred             chhhHHHHHHHHhHHHHHHHHhHHHHhhh
Q 011783          167 HQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (477)
Q Consensus       167 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (477)
                      +|++..++.+....+|..++|.+++.+.+
T Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  112 (141)
T TIGR00880        84 ERGVALGLMSAGIALGPLLGPPLGGVLAQ  112 (141)
T ss_pred             hhhHHHHHHHHhHHHHHHHhHHhHHHHhc
Confidence            99999999999999999999999999886

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.50  E-value=8.1e-14  Score=134.33  Aligned_cols=120  Identities=18%  Similarity=0.138  Sum_probs=107.0

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhh
Q 011783           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI  162 (477)
Q Consensus        84 ~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~  162 (477)
                      .|++.++..++..++.+++|++.||+|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+. ..++.|.
T Consensus       264 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  343 (420)
T PRK09528        264 FGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLN  343 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999888888999999999999999988776666 8899999


Q ss_pred             ccccchhhHHHH-HHHHhHHHHHHHHhHHHHhhhccccCCccccccccc
Q 011783          163 FREEHQALGLST-VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF  210 (477)
Q Consensus       163 ~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~  210 (477)
                      +|++.|+...+. ++....+|.+++|.+.|++.+       .++|+..|
T Consensus       344 ~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~-------~~G~~~~f  385 (420)
T PRK09528        344 FDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD-------SIGFQGTY  385 (420)
T ss_pred             cCccceeeeeeehHHHHHHHHHHHHHHHHHHHHH-------hhCchHHH
Confidence            999999888765 677888999999999999998       45666655

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.50  E-value=4.5e-13  Score=127.32  Aligned_cols=149  Identities=12%  Similarity=0.063  Sum_probs=132.1

Q ss_pred             hHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHH
Q 011783           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (477)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~  120 (477)
                      ++++...+..++............|.+.+|+|.++.+      +|++.+...++..++.++.|++.||+|+|+.+.++.+
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~------~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~  278 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASA------TGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAI  278 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhH------HHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHH
Confidence            4455555566666666666777788777889999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHH-HHhHHHHHHHHhHHHHhhhc
Q 011783          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQP  196 (477)
Q Consensus       121 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~  196 (477)
                      ...+..++.+++++.+.+++.+++.|+..+...+. ..++.+. |+++|++..++++ ...++|..+||.++|++.++
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~  355 (382)
T TIGR00902       279 ACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT  355 (382)
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999998888 9999988 9999999999986 57889999999999999983

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.49  E-value=7.7e-13  Score=126.77  Aligned_cols=133  Identities=19%  Similarity=0.198  Sum_probs=112.8

Q ss_pred             hchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhhhh
Q 011783           55 LPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN  134 (477)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~  134 (477)
                      +........+|.+.++.|.  ++      .++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (399)
T PRK05122        230 IGFGTIATFITLYYAARGW--DG------AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPS  301 (399)
T ss_pred             HHHHHHHHHHHHHHHHccc--cc------chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3344455566665566665  34      567778888999999999999999999999999999888888888888888


Q ss_pred             HHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhh
Q 011783          135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (477)
Q Consensus       135 ~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (477)
                      .+.+++.+++.|++.+...+. ...+.|.+|+++|+++.++++....+|..++|.+.|.+.+
T Consensus       302 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  363 (399)
T PRK05122        302 PWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVAS  363 (399)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888889999999998887776 7788899999999999999999999999999999999987

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.48  E-value=4e-12  Score=122.90  Aligned_cols=167  Identities=13%  Similarity=0.061  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 011783          277 SSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTI  356 (477)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  356 (477)
                      ..++.+++..+....+....|.+..      ++|+++.+.|++.+...++..++++ ..+++.||+|+|+.+..+.++..
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~s~~~~g~~~~~~~~~~~~~~~-~~G~l~dr~g~r~~~~~~~~~~~   99 (434)
T PRK11663         27 TMYLGYALFYFTRKSFNAAMPEMLA------DLGLSRSDIGLLATLFYITYGVSKF-VSGIVSDRSNARYFMGIGLIATG   99 (434)
T ss_pred             HHHHHHHHHHHhhhhHHHhhHHHHH------hcCCCHHHHHHHHHHHHHHHHHHHh-hhhHHHhhcCCchhHHHHHHHHH
Confidence            3344444444433444555555443      3899999999999999999999998 89999999999999999988888


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHH
Q 011783          357 PLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSW  436 (477)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  436 (477)
                      ++.+...+..+.      ..+.+..++.+++.+...+....++.+.+|+++|++++|+.+....+|..++|.+.+.+.+.
T Consensus       100 ~~~~~~~~~~~~------~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~  173 (434)
T PRK11663        100 IINILFGFSSSL------WAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH  173 (434)
T ss_pred             HHHHHHHHHhHH------HHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            887766554431      12222233344555666777888999999999999999999999999999999999999887


Q ss_pred             hhhhccccCCCCchHHHHHHHHHHHHHHHH
Q 011783          437 AQKRLDASFLPGSQMVFFVLNVVEAIGVLM  466 (477)
Q Consensus       437 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  466 (477)
                      .          ||+..|.+.+++.++..+.
T Consensus       174 ~----------gw~~~f~~~~i~~~~~~~~  193 (434)
T PRK11663        174 Y----------GWRYGMMIAGIIAIVVGLF  193 (434)
T ss_pred             c----------cHHHHHHHHHHHHHHHHHH
Confidence            6          8999999887766554433

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.48  E-value=1.1e-12  Score=124.52  Aligned_cols=131  Identities=17%  Similarity=0.307  Sum_probs=109.4

Q ss_pred             hchHhHHH-HHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhhhhHH
Q 011783           58 SSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFW  136 (477)
Q Consensus        58 ~~~~~~~~-~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~  136 (477)
                      .......| .+.+++|.++.+      .+++.+.......++.++.|++.||+|||+++.++.++..+......+.++.+
T Consensus       216 ~~~~~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (375)
T TIGR00899       216 ILYIINMPLLIIHELGLPDKL------AGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLW  289 (375)
T ss_pred             HHHHhhhHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344455 455778999888      88888888777888899999999999999999888877776666666778888


Q ss_pred             HHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhh
Q 011783          137 MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (477)
Q Consensus       137 ~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (477)
                      .+++.+++.|++.+...+. ..++.|..|+ +|++++++++....+|..++|.++|.+.+
T Consensus       290 ~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~  348 (375)
T TIGR00899       290 ALLMLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAE  348 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888999999988887777 8888998875 56799999999999999999999999988

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.48  E-value=2.2e-12  Score=123.04  Aligned_cols=148  Identities=11%  Similarity=0.023  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHH
Q 011783           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (477)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~  122 (477)
                      .+.+.+..++...........+|.+.+++|.+..+      .|...+.+.++..++.+..|++.||+|||+.+..+..+.
T Consensus       207 ~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~------ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~  280 (393)
T PRK09705        207 AWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQY------SGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQ  280 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhh------hhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence            34344444444555556666778777789999988      999999999999999999999999999999999988777


Q ss_pred             HHHHHHHHhhh-hHHHHHHHHHHhhhcccchhhH-HHHhhhhcc-ccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccc
Q 011783          123 VIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (477)
Q Consensus       123 ~i~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  198 (477)
                      .++..+....+ +...+.  -++.|++.+...|. .....+..+ +++|++..++.+....++..++|.+.|++.+..+
T Consensus       281 ~~~~~~~~~~~~~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g  357 (393)
T PRK09705        281 LVGFCGFIWLPLQLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG  357 (393)
T ss_pred             HHHHHHHHHccchHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            77766554323 222222  24567877776666 666667764 6789999999999999999999999999998543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.47  E-value=8e-12  Score=119.33  Aligned_cols=169  Identities=14%  Similarity=0.056  Sum_probs=131.1

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 011783          276 MSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLT  355 (477)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  355 (477)
                      +..+...++..........+.+.|+.+.     .|+++.+.|+..+...+...+.++ +.+++.||+|||+.+..+..+.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~gl~~~~~~l~~~~~~~-~~G~l~dr~g~k~~l~~~~~~~   86 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQ-----LGWAAVMVGIALGLRQFIQQGLGI-FGGAIADRFGAKPMIVTGMLMR   86 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCcHHHHHHHHHHHHHHHHHHHh-hhhHHHHHhCchHHHHHHHHHH
Confidence            3344555555555566666667665433     899999999999999999888887 8899999999999999999988


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHH
Q 011783          356 IPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFS  435 (477)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  435 (477)
                      .++.+......+     .+ .+.+...+.+++.+...+...+++.+.+|+++|+++.|+.+...++|..+||.++|.+. 
T Consensus        87 ~~~~~~~~~~~~-----~~-~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-  159 (400)
T PRK11646         87 AAGFATMAIAHE-----PW-LLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-  159 (400)
T ss_pred             HHHHHHHHHhcc-----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            888777655432     11 23333444456666677888888999999999999999999999999999999999998 


Q ss_pred             HhhhhccccCCCCchHHHHHHHHHHHHHHHHH
Q 011783          436 WAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT  467 (477)
Q Consensus       436 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  467 (477)
                      ..          ||+..|++.+++.++..++.
T Consensus       160 ~~----------g~~~~f~~~~~~~~~~~i~~  181 (400)
T PRK11646        160 QY----------DFRLVCATGAVLFVLAAAFN  181 (400)
T ss_pred             Hh----------hHHHHHHHHHHHHHHHHHHH
Confidence            44          78899988887766665443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.46  E-value=6.4e-12  Score=118.83  Aligned_cols=173  Identities=16%  Similarity=0.169  Sum_probs=133.6

Q ss_pred             HHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 011783          279 IIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPL  358 (477)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  358 (477)
                      ....++...........+|.|..+      .+.++.+.+++.+...++..++++ ..+++.||+|||+.+..+..+..++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~s~~~~g~~~~~~~~~~~i~~~-~~G~l~dr~g~r~~~~~~~~~~~~~   77 (365)
T TIGR00900         5 FAAQLISLIGTAITQVALPLYVLA------GTGSASVLSLAALAGMLPYVVLSP-IAGALADRYDRKKVMIGADLIRAVL   77 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------hhccHHHHHHHHHHHHHHHHHHHH-hhhHHHHhhchhHHHHHHHHHHHHH
Confidence            344455555555566666766654      688999999999999999999988 8899999999999999988877777


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 011783          359 LTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQ  438 (477)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  438 (477)
                      .....+....... ....+.+..++.+++.+...+...++..|.+|+++|++++|+.+....+|..++|.+++.+.+.. 
T Consensus        78 ~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-  155 (365)
T TIGR00900        78 VAVLPFVALLGGL-NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL-  155 (365)
T ss_pred             HHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            6665555422111 12233444455567778888889999999999999999999999999999999999999999887 


Q ss_pred             hhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          439 KRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       439 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                               ||+..|++.++..+++.+....
T Consensus       156 ---------g~~~~~~~~~~~~~~~~~~~~~  177 (365)
T TIGR00900       156 ---------GIKWAIWVDAVGFAISALLIVS  177 (365)
T ss_pred             ---------hHHHHHHHHHHHHHHHHHHHHh
Confidence                     8889998887766666554443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.46  E-value=2.9e-12  Score=123.50  Aligned_cols=188  Identities=14%  Similarity=0.049  Sum_probs=140.1

Q ss_pred             chhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011783          264 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG  343 (477)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~  343 (477)
                      .+.+.+.+++.++...+..++..+.........|.+..+      .+.++.+.|+..+...++..++++ +.+++.||+|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~s~~~~g~~~~~~~l~~~~~~~-~~G~l~dr~g   80 (417)
T PRK10489          8 LDLSLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQM------MTGSTLQVGLSVTLTGGAMFIGLM-VGGVLADRYD   80 (417)
T ss_pred             HHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH------HHCCHHHHHHHHHHHHHHHHHHHH-hhHHHhhhcC
Confidence            345556678888887777777776666666677766654      567899999999999999999998 8999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHH
Q 011783          344 PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFK  423 (477)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~  423 (477)
                      ||+.+..+..+..++............. ....+.+..++.+++.+...+...+...+.+|+++|+++.++.+....+|.
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  159 (417)
T PRK10489         81 RKKLILLARGTCGLGFIGLALNAFLPEP-SLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGS  159 (417)
T ss_pred             CceEEEehHHHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHH
Confidence            9999888777666665544322111111 112233344444555666677778888999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          424 AAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       424 ~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      .+||.++|.+.+..          +|++.|++.++..+++.++...
T Consensus       160 ~~g~~l~g~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~  195 (417)
T PRK10489        160 VISPALGGLLIAAG----------GVAWNYGLAAAGTFITLLPLLR  195 (417)
T ss_pred             HhHHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999877          7888888877777666555443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.46  E-value=1.2e-12  Score=125.93  Aligned_cols=149  Identities=19%  Similarity=0.263  Sum_probs=119.4

Q ss_pred             hhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhh
Q 011783           53 TALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS  132 (477)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~  132 (477)
                      .........+.++.+.++.+.+..+  .....+.+.++..++..++.+..|+++||+|||+.+..+.++..++.+...+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~  308 (408)
T PRK09874        231 IQVATGSIAPILTLYVRELAGNVSN--IAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV  308 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh
Confidence            3344445566677666665433322  11225667777888889999999999999999999999998888888877778


Q ss_pred             hhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCccccccccc
Q 011783          133 VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF  210 (477)
Q Consensus       133 ~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~  210 (477)
                      ++.+.+++.+++.|++.+...|. .+++.+..|+++|++.+++.+....+|..+||.++|.+.+       .++|+..|
T Consensus       309 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~-------~~g~~~~f  380 (408)
T PRK09874        309 QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISA-------NYGFRAVF  380 (408)
T ss_pred             ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHh-------hcchhHHH
Confidence            88888999999999999988887 8888999999999999999999999999999999999987       44555555

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.46  E-value=1.5e-12  Score=122.30  Aligned_cols=143  Identities=23%  Similarity=0.357  Sum_probs=127.5

Q ss_pred             HHHHHHhhhchhchHhHHHHHHHHh-cccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCch-hhHHHHHHHHH
Q 011783           47 WIIVLCTALPISSLFPFLYFMIKDF-QIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP-VIIMGTASVVI  124 (477)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~-~~~~~~~~~~i  124 (477)
                      .+..+.............|.+.++. |.++.+      .++..+...++..++.++.|++.||+|||+ .+..+..+..+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i  254 (352)
T cd06174         181 ALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAE------AGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAAL  254 (352)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3334444555566667777666665 888888      999999999999999999999999999999 99999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhh
Q 011783          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (477)
Q Consensus       125 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (477)
                      +.+.....++.+.+.+..++.|++.+...+. .+++.|..|+++|++.+++.+....+|..++|.+.+.+.+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~  326 (352)
T cd06174         255 GLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD  326 (352)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999988887 9999999999999999999999999999999999999987

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.44  E-value=2.1e-11  Score=111.61  Aligned_cols=175  Identities=18%  Similarity=0.169  Sum_probs=147.8

Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 011783          275 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  354 (477)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  354 (477)
                      ++.+.+..+......+.....+|....+      +|.|..++|.+.+.+..+..++++ +...+.+|++||+.+...+.+
T Consensus        15 l~aLa~~~F~igttEfv~~gLLp~iA~d------l~vs~~~aG~lis~yAl~~ai~ap-~l~~lt~r~~Rr~lLl~~l~l   87 (394)
T COG2814          15 LLALALAAFAIGTTEFVPVGLLPPIAAD------LGVSEGAAGQLITAYALGVALGAP-LLALLTGRLERRRLLLGLLAL   87 (394)
T ss_pred             HHHHHHHHHHHHhHHHHHHhchHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHcccchHHHHHHHHHH
Confidence            4444555555555666666666655544      899999999999999999999999 778999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHH
Q 011783          355 TIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALF  434 (477)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  434 (477)
                      ..++-++..+.++..      .+.+.=++.++..+..++...++..+.+|+++|+++.++..+...++..+|..++.++-
T Consensus        88 Fi~~n~l~alAp~f~------~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig  161 (394)
T COG2814          88 FIVSNLLSALAPSFA------VLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLG  161 (394)
T ss_pred             HHHHHHHHHHhccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHH
Confidence            999988887776633      45555566677888899999999999999999999999999999999999999999999


Q ss_pred             HHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhhhhhh
Q 011783          435 SWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLA  473 (477)
Q Consensus       435 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  473 (477)
                      |..          ||+.+|++.+++.+++.+..+. .+|
T Consensus       162 ~~~----------GWR~~F~~ia~l~ll~~~~~~~-~lP  189 (394)
T COG2814         162 QLF----------GWRATFLAIAVLALLALLLLWK-LLP  189 (394)
T ss_pred             HHh----------hHHHHHHHHHHHHHHHHHHHHH-hCC
Confidence            999          9999999999999998887766 455

>PRK03699 putative transporter; Provisional

Probab=99.44  E-value=3.4e-12  Score=121.91  Aligned_cols=147  Identities=11%  Similarity=0.109  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHhhhchhchHhHHHHHH-HHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHH
Q 011783           42 ELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (477)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~  120 (477)
                      .++.+.+..++.......+...+|.+. +++|.+..+      .+++.+.+.++..++.+..|+++||+|||+.+.....
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~  279 (394)
T PRK03699        206 GVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLED------AGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAG  279 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH------hhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Confidence            344444555555555555667778655 668999998      9999999999999999999999999999999998887


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhh
Q 011783          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (477)
Q Consensus       121 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (477)
                      +..+...+....++.+.+.+..++.|++.+...+. .++..|..| +++++..+.......+|..++|.+.|++.+
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~  354 (394)
T PRK03699        280 LALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVA  354 (394)
T ss_pred             HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            77777777667777777777788889877766666 777777765 556788898888999999999999999998

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.44  E-value=2.3e-11  Score=115.97  Aligned_cols=144  Identities=16%  Similarity=0.075  Sum_probs=119.5

Q ss_pred             CccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 011783          307 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL  386 (477)
Q Consensus       307 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (477)
                      +++|+++.+.+...+...++..++++ +.+++.||+|||+.+..+..+..++.+...+..+      ...+.+.-++.++
T Consensus        48 ~~~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~  120 (394)
T PRK10213         48 QDLGISEGVAGQSVTVTAFVAMFASL-FITQTIQATDRRYVVILFAVLLTLSCLLVSFANS------FSLLLIGRACLGL  120 (394)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHCh------HHHHHHHHHHHHH
Confidence            44899999999999999999999988 8899999999999999999988887766655432      1133344455567


Q ss_pred             hhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHH
Q 011783          387 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM  466 (477)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  466 (477)
                      +.+...+....++.|.+|+++|+++.++.....++|..++|.+++.+.+..          ||+..|++.+++.++..+.
T Consensus       121 ~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~----------gw~~~f~~~~~l~~~~~l~  190 (394)
T PRK10213        121 ALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI----------GWRNVFNAAAVMGVLCIFW  190 (394)
T ss_pred             hhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CHHHHHHHHHHHHHHHHHH
Confidence            777788888999999999999999999999999999999999999999887          8999999888776665544


Q ss_pred             H
Q 011783          467 T  467 (477)
Q Consensus       467 ~  467 (477)
                      .
T Consensus       191 ~  191 (394)
T PRK10213        191 I  191 (394)
T ss_pred             H
Confidence            3

>PRK12382 putative transporter; Provisional

Probab=99.43  E-value=3.4e-12  Score=121.98  Aligned_cols=141  Identities=21%  Similarity=0.254  Sum_probs=118.0

Q ss_pred             hchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhhhh
Q 011783           55 LPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN  134 (477)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~  134 (477)
                      ..........|.+.++.+.+  +      .++..+.+.++..+++++.|++.||+|||+.+..+..+.+++.++..+.++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~  301 (392)
T PRK12382        230 VGFAVIGTFVSLYFASKGWA--M------AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPT  301 (392)
T ss_pred             HHHhHHHHHHHHHHHhcCCc--h------hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHccc
Confidence            33444555666666666554  3      566677788888999999999999999999999999999888888888888


Q ss_pred             HHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCccccccccc
Q 011783          135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF  210 (477)
Q Consensus       135 ~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~  210 (477)
                      .+.+++.+++.|++.+...+. .+.+.|.+|+++|+++.++++....+|..+||.+.+.+.+       .++|+..+
T Consensus       302 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~-------~~g~~~~~  371 (392)
T PRK12382        302 AWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT-------SFGYPSVF  371 (392)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCchHHH
Confidence            888888999999998887777 8888999999999999999999999999999999999998       45565555

>PRK03545 putative arabinose transporter; Provisional

Probab=99.43  E-value=1.8e-11  Score=116.81  Aligned_cols=147  Identities=16%  Similarity=0.110  Sum_probs=119.7

Q ss_pred             CCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 011783          306 LGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKN  385 (477)
Q Consensus       306 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (477)
                      .+++|.++.+.|+..+...++..+++. ..+++.||+|||+.+..+..+..++.+...+..+.     + .+.+.-++.+
T Consensus        36 ~~~~~~s~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~l~~~r~~~G  108 (390)
T PRK03545         36 AQSFHMQTAQVGLMLTIYAWVVALMSL-PLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNF-----T-VLLISRIGIA  108 (390)
T ss_pred             HhHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccH-----H-HHHHHHHHHH
Confidence            345899999999999999999988888 67899999999999999988888877766554331     1 2333334455


Q ss_pred             hhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHH
Q 011783          386 LLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVL  465 (477)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  465 (477)
                      ...+...+...+++.+..|+++|++++|+......+|..++|.+.+.+.++.          ||+..|++.+++.++..+
T Consensus       109 ~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~----------gw~~~f~~~~~~~~l~~~  178 (390)
T PRK03545        109 FAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL----------GWRTTFLAIGGGALITLL  178 (390)
T ss_pred             HHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh----------cHHHHHHHHHHHHHHHHH
Confidence            6666677888889999999999999999999999999999999999998877          899999999888777655


Q ss_pred             HHhh
Q 011783          466 MTFK  469 (477)
Q Consensus       466 ~~~~  469 (477)
                      ....
T Consensus       179 ~~~~  182 (390)
T PRK03545        179 LLIK  182 (390)
T ss_pred             HHHH
Confidence            5443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.43  E-value=2.6e-12  Score=126.84  Aligned_cols=131  Identities=19%  Similarity=0.227  Sum_probs=104.6

Q ss_pred             chHhHHHHHH-HHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhh--hhH
Q 011783           59 SLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS--VNF  135 (477)
Q Consensus        59 ~~~~~~~~~~-~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~  135 (477)
                      .....+|.+. +++|.+..+      .+++.+...++..++.++.|+++||+|||+++..+.++..+..++....  .+.
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~------~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHT------VANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANV  366 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHH
Confidence            3456778666 589999998      9999999999999999999999999999999988877766665544332  344


Q ss_pred             HHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhh
Q 011783          136 WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (477)
Q Consensus       136 ~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (477)
                      +.+.+..++.+.......+. .+++.|.+|+++|++++++.+....+|..+||.++|.+.+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~  427 (496)
T PRK03893        367 WVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQ  427 (496)
T ss_pred             HHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhc
Confidence            44555555554433233344 7889999999999999999999999999999999999988

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.42  E-value=1.9e-11  Score=116.27  Aligned_cols=178  Identities=10%  Similarity=0.100  Sum_probs=134.9

Q ss_pred             hhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 011783          273 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  352 (477)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  352 (477)
                      +.++......+.............|.+..      ++|.+..+.++..+...++..++++ ..+++.||+|||+.+..+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~g~s~~~~g~~~s~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~   75 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAH------DVGISIPAAGHMISYYALGVVVGAP-IIALFSSRYSLKHILLFLV   75 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHH------HcCCCHHHHhHHHHHHHHHHHHHHH-HHHHHHccCccHHHHHHHH
Confidence            34455555555555555555555554443      3899999999999999999999998 9999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHH
Q 011783          353 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA  432 (477)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~  432 (477)
                      .+..++.+...+..+.      ..+.+.-.+.+++.+...+.......+..|+++|+++++.......++..++|.+++.
T Consensus        76 ~~~~~~~~l~~~~~~~------~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~  149 (382)
T PRK10091         76 ALCVIGNAMFTLSSSY------LMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTY  149 (382)
T ss_pred             HHHHHHHHHHHHhCcH------HHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHH
Confidence            8888877766554431      1233334455666666677777788899999999999999999999999999999999


Q ss_pred             HHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhhhhhhc
Q 011783          433 LFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQ  474 (477)
Q Consensus       433 l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (477)
                      +.+..          +|+..|.+.+++.++..+.... ..||
T Consensus       150 l~~~~----------gwr~~f~~~~~~~~~~~~~~~~-~lp~  180 (382)
T PRK10091        150 LSQEF----------SWRYTFLLIAVFNIAVLASIYF-WVPD  180 (382)
T ss_pred             Hhhhc----------cHHHHHHHHHHHHHHHHHHHHH-hCCC
Confidence            88876          8999999988877666554433 3444

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.42  E-value=2e-11  Score=116.45  Aligned_cols=146  Identities=16%  Similarity=0.095  Sum_probs=120.9

Q ss_pred             CccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 011783          307 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL  386 (477)
Q Consensus       307 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (477)
                      +++|.++.+.++..+...++..++++ +.+++.||+|||+.+..+..+..++.+......+      ...+.+..++.++
T Consensus        33 ~~~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~g~  105 (385)
T TIGR00710        33 ADLSTPASIVQMTLTLYLLGFAAGQL-LWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNN------IETLLVLRFVQAF  105 (385)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHH-hhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc------HHHHHHHHHHHHc
Confidence            34899999999999999999999998 8899999999999999988888777776655432      1133344455567


Q ss_pred             hhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHH
Q 011783          387 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM  466 (477)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  466 (477)
                      +.+...+...++..|.+|+++|+++.|+.+....+|..++|.+.+.+.++.          +|+..|++.+++.++..+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~  175 (385)
T TIGR00710       106 GASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL----------SWHAIFAFLSLAGILLSAL  175 (385)
T ss_pred             chhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CHHHHHHHHHHHHHHHHHH
Confidence            777788888999999999999999999999999999999999999998877          8999998888777776665


Q ss_pred             Hhh
Q 011783          467 TFK  469 (477)
Q Consensus       467 ~~~  469 (477)
                      ..+
T Consensus       176 ~~~  178 (385)
T TIGR00710       176 IFF  178 (385)
T ss_pred             HHH
Confidence            543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.41  E-value=2.6e-11  Score=116.35  Aligned_cols=152  Identities=16%  Similarity=0.091  Sum_probs=120.9

Q ss_pred             cCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 011783          305 KLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVK  384 (477)
Q Consensus       305 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (477)
                      ..+++|++..+.|+..+...++..++++ ..+++.||+|||+.+..+.++..++.....+..+.      ..+.+.-++.
T Consensus        34 l~~~~~~s~~~~g~~~s~~~~~~~~~~~-~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~r~l~  106 (412)
T TIGR02332        34 MGKDLGLSATMFGLAATLFYAAYVICGI-PSNIMLAIIGARRWIAGIMVLWGIASTATMFATGP------ESLYLLRILV  106 (412)
T ss_pred             hHhhcCCCHHHHHHHHHHHHHHHHHHHh-hHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCH------HHHHHHHHHH
Confidence            3345899999999999999999999998 88999999999999999988888887776654331      1334444556


Q ss_pred             hhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhh--hhccccCCCCchHHHHHHHHHHHH
Q 011783          385 NLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQ--KRLDASFLPGSQMVFFVLNVVEAI  462 (477)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~  462 (477)
                      +++.+...+....++.|.+|+++|+++.|+.+....+|..+++.+++.+.+...  +.      .||+..|++.++..++
T Consensus       107 G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~------~gwr~~f~~~~~~~l~  180 (412)
T TIGR02332       107 GIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMAL------KGWQWLFLLEGFPSVI  180 (412)
T ss_pred             HHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc------cchhHHHHHHHHHHHH
Confidence            677777888888889999999999999999999999999999999998875311  11      1899999998877766


Q ss_pred             HHHHHhh
Q 011783          463 GVLMTFK  469 (477)
Q Consensus       463 ~~~~~~~  469 (477)
                      ..++.++
T Consensus       181 ~~~~~~~  187 (412)
T TIGR02332       181 LGVMTWF  187 (412)
T ss_pred             HHHHHhh
Confidence            5554433

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.41  E-value=2.3e-11  Score=116.68  Aligned_cols=176  Identities=11%  Similarity=0.025  Sum_probs=130.6

Q ss_pred             chhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHH
Q 011783          272 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-GPIMVARI  350 (477)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~  350 (477)
                      .+.++..+.......+..+....+++.|+.+.     +|++..+++.+.........++.+ ++|+++||+ |||+.+..
T Consensus         8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~-----lgls~~~a~~i~~~~~~~~~l~~l-igG~LaDRilGrrr~ili   81 (493)
T PRK15462          8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQ-----LKYDDNHAYELFSAYCSLVYVTPI-LGGFLADKVLGNRMAVML   81 (493)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHccCcHHHHHH
Confidence            34455556666666667777888889888754     799999999999998888888877 999999999 99999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcc--hhhHHhHHHHHHHHHHHHHhhh
Q 011783          351 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQD--QRGAANGIAMTGMSLFKAAGPA  428 (477)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~g~~~~~~  428 (477)
                      +.++..++.+.+.....  ... .  ......+...+.+...+...+++.|.+|++  +|.++.++.....++|+.++|.
T Consensus        82 G~il~~lg~lll~~~~~--~~~-~--~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~  156 (493)
T PRK15462         82 GALLMAIGHVVLGASEI--HPS-F--LYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPI  156 (493)
T ss_pred             HHHHHHHHHHHHHHhhc--chh-H--HHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHH
Confidence            99888888665543211  101 1  111111112333444566678889999875  6999999999999999999999


Q ss_pred             HHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHh
Q 011783          429 GGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF  468 (477)
Q Consensus       429 ~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  468 (477)
                      +.|++.+..          ||+..|.+.++..+++.+...
T Consensus       157 l~g~L~~~~----------Gw~~~F~iaaigm~l~li~~~  186 (493)
T PRK15462        157 ACGYAQEEY----------SWAMGFGLAAVGMIAGLVIFL  186 (493)
T ss_pred             HHHHHHhhh----------ChHHHHHHHHHHHHHHHHHHH
Confidence            999998877          899999987776666655543

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.41  E-value=3.9e-12  Score=121.70  Aligned_cols=149  Identities=13%  Similarity=0.105  Sum_probs=108.9

Q ss_pred             hHHHHHHHHHHHhhhchhchHhHHHHH-HHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCch--hhHH
Q 011783           41 TELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP--VIIM  117 (477)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~--~~~~  117 (477)
                      +.++...+..++............|.+ .+++|.+..+      .+++.+...++..++.++.|+++||+|||+  ....
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  288 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILE------AGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFA  288 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence            445566666677777777777777755 4568888888      899999999999999999999999999996  1111


Q ss_pred             ------HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHH
Q 011783          118 ------GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (477)
Q Consensus       118 ------~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  190 (477)
                            +.++..+........++.+..+....+.+.+.+ ..+. .+++.|.+|+++|++++++.+....+|..++|.+.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~  367 (399)
T TIGR00893       289 RKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVI  367 (399)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHh
Confidence                  111111111222223344444444445455555 5666 99999999999999999999999999999999999


Q ss_pred             HHhhhc
Q 011783          191 GFLAQP  196 (477)
Q Consensus       191 ~~l~~~  196 (477)
                      +.+.+.
T Consensus       368 g~l~~~  373 (399)
T TIGR00893       368 GAIAAT  373 (399)
T ss_pred             hhhccC
Confidence            999883

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.41  E-value=2e-12  Score=123.70  Aligned_cols=150  Identities=20%  Similarity=0.192  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHhhhchhchHhHHHHHH-HHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHH
Q 011783           42 ELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (477)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~  120 (477)
                      .+.......+............+|.+. +++|.+..+      .+.+.+...++..++.++.|+++||+|||+.+.....
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~  293 (394)
T TIGR00883       220 PFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANS------ALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTV  293 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhH------HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence            344555555555566666667777655 778888888      8999999999999999999999999999998776554


Q ss_pred             HHHHHH--HHHHh--hhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHH-HHHHhHHHHHHHHhHHHHhh
Q 011783          121 SVVIFN--TLFGL--SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLST-VSTAWGIGLIIGPALGGFLA  194 (477)
Q Consensus       121 ~~~i~~--~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~  194 (477)
                      +..+..  +....  .++.+.++...++.|++.+...+. .+++.|.+|+++|++++++ .+....+|..++|.++|.+.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~  373 (394)
T TIGR00883       294 LAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALV  373 (394)
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHH
Confidence            444333  22222  246677777888889887777666 9999999999999999997 45667789999999999999


Q ss_pred             hcc
Q 011783          195 QPA  197 (477)
Q Consensus       195 ~~~  197 (477)
                      ++.
T Consensus       374 ~~~  376 (394)
T TIGR00883       374 AMT  376 (394)
T ss_pred             HHc
Confidence            843

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00895 2A0115 benzoate transport

Probab=99.41  E-value=3.9e-12  Score=121.87  Aligned_cols=144  Identities=19%  Similarity=0.256  Sum_probs=115.3

Q ss_pred             HHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHH
Q 011783           44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (477)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~  123 (477)
                      ..+++..++............|.+.+++|.+..+      .+++.+...++..++.++.|+++||+|||+.+....+...
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  326 (398)
T TIGR00895       253 VLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSL------AATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAV  326 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence            3444444455555555666778888999999888      9999999999999999999999999999955544444433


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHh
Q 011783          124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (477)
Q Consensus       124 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  193 (477)
                      ...++....++.+.+++..++.|++.+...+. .+++.|.+|+++|++++|+......+|..+||.++|++
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       327 FAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            33333333567777888889999998887777 99999999999999999999999999999999999876

>PRK10504 putative transporter; Provisional

Probab=99.40  E-value=2.8e-11  Score=118.61  Aligned_cols=173  Identities=19%  Similarity=0.086  Sum_probs=134.7

Q ss_pred             hhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 011783          274 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV  353 (477)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  353 (477)
                      .++......++............|.+..+      +|.++.+.+...+...++..++.+ +.+++.||+|||+.+..+..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~~~~~~~~~~~~~~~~~-~~g~l~d~~g~r~~~~~~~~   83 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMAQS------LGESPLHMHMVIVSYVLTVAVMLP-ASGWLADRVGVRNIFFTAIV   83 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHH------hCcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhchHHHHHHHHH
Confidence            45566666666665556666677766654      899999999999888888888887 89999999999999988877


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHH
Q 011783          354 LTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL  433 (477)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l  433 (477)
                      +..++.+...+..+      ...+.+...+.+++.+...+....++.+.+|+++|+++.|+.+....+|..++|.+.|.+
T Consensus        84 ~~~~~~~~~~~~~~------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l  157 (471)
T PRK10504         84 LFTLGSLFCALSGT------LNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLL  157 (471)
T ss_pred             HHHHHHHHHHHhCC------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            77766655443321      112334445556777778888888999999999999999999999999999999999999


Q ss_pred             HHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          434 FSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       434 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      .++.          ||++.|.+...+..++.+....
T Consensus       158 ~~~~----------gw~~~f~~~~~~~~l~~~~~~~  183 (471)
T PRK10504        158 VEYA----------SWHWIFLINIPVGIIGAIATLM  183 (471)
T ss_pred             Hhhc----------cHHHHHHHHHHHHHHHHHHHHH
Confidence            9876          8999999887777766665544

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.40  E-value=7.9e-12  Score=118.84  Aligned_cols=135  Identities=19%  Similarity=0.294  Sum_probs=109.3

Q ss_pred             HhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHh
Q 011783           52 CTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL  131 (477)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~  131 (477)
                      ............+|.+.++.|.+.++      .|++.+...++..+++++.|++.||+|+|+++..+.....++.+... 
T Consensus       211 ~~~~~~~~~~~~lp~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-  283 (381)
T PRK03633        211 ISGIVLGSLYGLMPLYLNHQGMSDAS------IGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-  283 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-
Confidence            33333444455678788888888888      89999999999999999999999999999999988888777665443 


Q ss_pred             hhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhh
Q 011783          132 SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (477)
Q Consensus       132 ~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (477)
                       + ........++.|++.+...|. .+.+.|..|+++++...+.+....++|..+||.++|++.+
T Consensus       284 -~-~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~  346 (381)
T PRK03633        284 -S-QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQ  346 (381)
T ss_pred             -h-hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2 233445677788876666777 8889999998888888888888999999999999999988

>TIGR00897 2A0118 polyol permease family

Probab=99.40  E-value=5.5e-12  Score=120.75  Aligned_cols=147  Identities=16%  Similarity=0.287  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhH-HHHH
Q 011783           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII-MGTA  120 (477)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~-~~~~  120 (477)
                      .++...+..++............|.+.+++|.+..+      .+++.+...++..++.+..|+++||+|||+.+. .+.+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l  296 (402)
T TIGR00897       223 NVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSE------WLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGV  296 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhH------HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence            344444555555555566667788888899999988      899999999999999999999999999988764 3334


Q ss_pred             HHHHHHHHHHh-----hhhHHHHHHHHHHhhhcccchhhHHHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhh
Q 011783          121 SVVIFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (477)
Q Consensus       121 ~~~i~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (477)
                      ..+++.+....     .++.+..++..++.|++.+...+....+.|..| ++|++++|+.+....+|..++|.+++.+.+
T Consensus       297 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~  375 (402)
T TIGR00897       297 GCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPLAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIG  375 (402)
T ss_pred             HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44443333322     235677778888889887766666566677654 689999999999999999999999999998

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.39  E-value=5.8e-12  Score=113.85  Aligned_cols=172  Identities=14%  Similarity=0.106  Sum_probs=143.5

Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 011783          275 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  354 (477)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  354 (477)
                      +....+.+..+.+.--.+....|...      ++.++|..+.|.+.+...+..-++.. +.|.++||.++|..+..++++
T Consensus        31 f~~~fiGYa~fYl~RknF~~a~p~l~------e~~~lsk~~lG~i~s~f~i~YG~sKf-~~G~~sDr~npr~fm~~gLil  103 (448)
T COG2271          31 FLSIFIGYAAFYLTRKNFNLAMPALI------EDGGLSKTQLGILGSAFSITYGVSKF-VMGVLSDRSNPRYFMAFGLIL  103 (448)
T ss_pred             HHHHHHHHHHHHHHHHhHhhccHHHH------HhcCCCHHHHHHHHHHHHHHHHHHHH-HhhhhcccCCCceeehHHHHH
Confidence            34445555555555555544444333      33779999999999999999999999 999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHH--HH
Q 011783          355 TIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGG--GA  432 (477)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~--g~  432 (477)
                      +++..+++.+...      ...+.++..+.+.+.+.-.|.....+..-+|+++||+..++-|+..++|+++.|.+.  +.
T Consensus       104 sai~nil~Gfs~s------~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~  177 (448)
T COG2271         104 SAIVNILFGFSPS------LFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAF  177 (448)
T ss_pred             HHHHHHHHhhhhH------HHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHH
Confidence            9999999888774      335666667778899999999999999999999999999999999999999999999  88


Q ss_pred             HHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          433 LFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       433 l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      +.++.          +|+..|++-++++++..++.++
T Consensus       178 ~~~~~----------~w~~~f~~pgiiaiival~~~~  204 (448)
T COG2271         178 FAFHG----------GWRAAFYFPGIIAIIVALILLF  204 (448)
T ss_pred             HHhcc----------chhHHHHHHHHHHHHHHHHHHH
Confidence            87776          8999999999998888777766

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.39  E-value=2.8e-11  Score=113.90  Aligned_cols=163  Identities=20%  Similarity=0.211  Sum_probs=128.8

Q ss_pred             HHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 011783          282 YCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTS  361 (477)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  361 (477)
                      .++............+.++.     +++|.++.+.+++.+...++..++++ ..+++.||+|||+.+..+..+..++...
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~-----~~~~~s~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g~r~~l~~~~~~~~~~~~~   78 (352)
T PF07690_consen    5 FFLSGFGFSIISPALPLYLA-----EELGLSPSQIGLLFSAFFLGSALFSP-FAGYLSDRFGRRRVLIIGLLLFALGSLL   78 (352)
T ss_dssp             HHHHHHHHHHHHHHHH-HHH-----CCSTTTSHCHHHHHHHHHHHHHHHHH-HHHHHHHHS-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-----HccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCeeeEeehhhhhhhHHHH
Confidence            33334344444445552332     33899999999999999999999998 8899999999999999998888888444


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhc
Q 011783          362 YPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRL  441 (477)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~  441 (477)
                      ..+..   +  .+ .+.+..++.+++.+...+....++.+.+|+++|++++++.+....+|..++|.+++.+.+..    
T Consensus        79 ~~~~~---~--~~-~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~----  148 (352)
T PF07690_consen   79 LAFAS---N--FW-LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF----  148 (352)
T ss_dssp             HHHHC---C--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC----
T ss_pred             hhhhh---h--HH-HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc----
Confidence            44321   1  23 45556666778888899999999999999999999999999999999999999999998776    


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHH
Q 011783          442 DASFLPGSQMVFFVLNVVEAIGVLM  466 (477)
Q Consensus       442 ~~~~~~g~~~~~~~~~~~~~~~~~~  466 (477)
                            +|+..|++.+++.++..++
T Consensus       149 ------~~~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  149 ------GWRWAFLISAILSLIAAIL  167 (352)
T ss_dssp             ------HHCCHHHHHHHHHHHHHHH
T ss_pred             ------ccccccccccchhhhhhhh
Confidence                  7889999999988888775

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=99.38  E-value=4.7e-09  Score=98.67  Aligned_cols=362  Identities=14%  Similarity=0.051  Sum_probs=207.2

Q ss_pred             hHHHHHHHHHHHhhhchhchHhHHHHHHHHhcc-cccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHH
Q 011783           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQI-AKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (477)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~  119 (477)
                      +....++...+++..+.-+.....|.+..+... +--.      .+...-+-.+...+.++..|.+.||..|.+++..+.
T Consensus         2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~------~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l   75 (432)
T PF06963_consen    2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLP------VSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSL   75 (432)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHH------HHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHH
Confidence            345678889999999999999999977777643 3332      444455555667888899999999999999988876


Q ss_pred             HHHHHHHHHHHh------h--h-------hHHHHHHHHHHhhhcccchhhH--HHHhhhhc------cccchhhHHHHHH
Q 011783          120 ASVVIFNTLFGL------S--V-------NFWMAVLTRFLLGSLNGLLGPI--KAYACEIF------REEHQALGLSTVS  176 (477)
Q Consensus       120 ~~~~i~~~~~~~------~--~-------~~~~l~~~r~l~G~~~g~~~~~--~~~i~~~~------~~~~r~~~~~~~~  176 (477)
                      +.--++..+.+.      .  +       -...+++.-.+.|.-.-....+  .+.=.||.      +++++.+.++...
T Consensus        76 ~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mR  155 (432)
T PF06963_consen   76 VVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMR  155 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHH
Confidence            654433322221      1  0       1122222222222222222222  22224443      3455666666666


Q ss_pred             HHhHHHHHHHHhHHHHhhhccccCCcccccccccccccchHHHHHHHHHhhcc----------ccccCCCCCCccchhhh
Q 011783          177 TAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGE----------TLHRHNDDDDSCDVSYD  246 (477)
Q Consensus       177 ~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~~~~~~~~  246 (477)
                      -.=-+.-+++|++.|.+...       .+.....     ......-..-..+|          .|.-..+++++.+...+
T Consensus       156 RIDL~ckllaPl~vG~l~t~-------~s~~~~~-----~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~  223 (432)
T PF06963_consen  156 RIDLFCKLLAPLFVGLLMTF-------ASPVIAA-----IFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSS  223 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhhc-------cCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccc
Confidence            66778899999999999872       2221111     11111111111111          11111111111000000


Q ss_pred             hhh---------hhhccchhhcccCCchhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhH
Q 011783          247 ALE---------SASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVG  317 (477)
Q Consensus       247 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g  317 (477)
                      +.+         ...+...+.-.+....++..++++-+...+...++ ++...++...+..|+..      .|+++...|
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalL-Y~TVLsf~~lmt~yl~~------~G~s~~~ig  296 (432)
T PF06963_consen  224 DEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALALL-YFTVLSFGGLMTAYLKS------QGYSPSVIG  296 (432)
T ss_pred             cccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHH-HHHHhcCcHHHHHHHHH------CCCCHHHHH
Confidence            000         00000001112233456677777755554444444 44456777778888876      699999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHhhhhHHHHh
Q 011783          318 EVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSG----FGLAFLLNCASVVKNLLSVSIIT  393 (477)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  393 (477)
                      .+-....+.++.+.. +.+++.+|+|..+.-..+......++.........+.    ......+.....+.-++--+.-.
T Consensus       297 i~R~~gav~Gl~gT~-~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL  375 (432)
T PF06963_consen  297 IFRGLGAVFGLLGTW-VYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDL  375 (432)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhH
Confidence            999999999999988 9999999999888877777655544332222111111    12222333333333344444555


Q ss_pred             HHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhh
Q 011783          394 GLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPA  428 (477)
Q Consensus       394 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~  428 (477)
                      ...-+.+|.+|+++||+..|+.+..+++...+.-.
T Consensus       376 ~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~  410 (432)
T PF06963_consen  376 AVTQIMQENVPESERGAVSGVQNSLQSLFELLSFV  410 (432)
T ss_pred             HHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            66678889999999999999999999887755443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.38  E-value=9.6e-11  Score=114.46  Aligned_cols=154  Identities=14%  Similarity=0.107  Sum_probs=109.0

Q ss_pred             CccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 011783          307 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL  386 (477)
Q Consensus       307 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (477)
                      +++|++..+.+...+...++..++++ +.+++.||+|+|+.+..+.++..++.+...+..+.     + .+.+..++.++
T Consensus        64 ~~~gls~~~~g~~~~~~~~~~~~~~~-~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~-----~-~l~~~r~l~G~  136 (476)
T PLN00028         64 DNLNLTKSDIGNAGIASVSGSIFSRL-AMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSA-----T-GFIAVRFFIGF  136 (476)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCH-----H-HHHHHHHHHHH
Confidence            44899999999998888888888888 89999999999999988887777776655554321     1 22222233344


Q ss_pred             hhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHH
Q 011783          387 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM  466 (477)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  466 (477)
                      +.+.. .....++.+.+|+++||+++|+.+...++|..+++.+.+.+........... ..||+..|++.+++.++..+.
T Consensus       137 ~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~-~~gWr~~f~i~g~l~l~~~l~  214 (476)
T PLN00028        137 SLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPS-FTAWRIAFFVPGLLHIIMGIL  214 (476)
T ss_pred             HHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-hhhhHHHHHHHHHHHHHHHHH
Confidence            44433 3345567899999999999999998888999988888776655432210000 017999999988887776655


Q ss_pred             Hhh
Q 011783          467 TFK  469 (477)
Q Consensus       467 ~~~  469 (477)
                      .++
T Consensus       215 ~~~  217 (476)
T PLN00028        215 VLT  217 (476)
T ss_pred             HHH
Confidence            444

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.38  E-value=5.8e-11  Score=116.32  Aligned_cols=180  Identities=10%  Similarity=-0.032  Sum_probs=130.3

Q ss_pred             hhhhhcch-hhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh-hc
Q 011783          266 KKSLLKNW-PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-LG  343 (477)
Q Consensus       266 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~-~~  343 (477)
                      ..+.+++| .++..+...++..+..+....+.+.|+.+.     +|++..+.+............... +++++.|| +|
T Consensus        13 ~~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~-----lg~s~~~a~~~~~~~~~~~~~~~~-~~G~LaDr~~G   86 (500)
T PRK09584         13 SLNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQ-----LGMSEADSITLFSSFSALVYGLVA-IGGWLGDKVLG   86 (500)
T ss_pred             ChhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccc
Confidence            34455666 477777777777777777778888887654     899998888777765544444444 78999999 59


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcch--hhHHhHHHHHHHHH
Q 011783          344 PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQ--RGAANGIAMTGMSL  421 (477)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~  421 (477)
                      ||+.+..+..+..++...+.+...  .   ...+.+...+.+++.+...+...++..+.+|+++  +..+.++.+...++
T Consensus        87 ~r~~~~~g~~~~~ig~~l~~~~~~--~---~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~i  161 (500)
T PRK09584         87 TKRVIMLGAIVLAIGYALVAWSGH--D---AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINI  161 (500)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcc--c---HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHH
Confidence            999999999888887666654321  1   1122223333455666667777788899887643  45678888999999


Q ss_pred             HHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHH
Q 011783          422 FKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM  466 (477)
Q Consensus       422 g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  466 (477)
                      |.+++|.+.|++.++.          ||+..|.+.++..+++.+.
T Consensus       162 G~~~gp~i~g~l~~~~----------g~~~~F~i~~i~~~i~~i~  196 (500)
T PRK09584        162 GSFFSMLATPWLAAKY----------GWSVAFALSVVGMLITVVN  196 (500)
T ss_pred             HHHHHHHHHHHHHHhh----------CHHHHHHHHHHHHHHHHHH
Confidence            9999999999999887          8999999887655555443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.37  E-value=3.6e-11  Score=117.03  Aligned_cols=176  Identities=12%  Similarity=0.080  Sum_probs=135.6

Q ss_pred             hhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHH
Q 011783          273 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-LGPIMVARIA  351 (477)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~  351 (477)
                      +.++......++..+..+....+++.|+.+.   .++|++..+++...+...++..++.+ ++|++.|| +|||+.+..+
T Consensus        10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~---~~lg~s~~~ag~~~~~~~~~~~~~~~-~~G~laDr~~G~~~~l~~~   85 (475)
T TIGR00924        10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQ---AGLGFSQEQAFIIFGAYSALVYLLTS-VGWWFGDRVWGTKKTMVLG   85 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCHHHHHHHHHHHHHHHHHHHh-hHHHHHHhhcchHHHHHHH
Confidence            3444555556665677777788888887642   23789999999999999999999998 99999999 8999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcch---hhHHhHHHHHHHHHHHHHhhh
Q 011783          352 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQ---RGAANGIAMTGMSLFKAAGPA  428 (477)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~~~g~~~~~~  428 (477)
                      ..+..++.+.+.+....     + .+.....+.+.+.+...+...++..+.+|+++   |+++.++.+...++|.++||.
T Consensus        86 ~~~~~~g~~~~~~~~~~-----~-~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~  159 (475)
T TIGR00924        86 GIVLMLGHFMLAMSIYP-----D-LIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPL  159 (475)
T ss_pred             HHHHHHHHHHHHhcccH-----h-HHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHH
Confidence            99888887766654321     1 22223333456666677888888888888654   888999999999999999999


Q ss_pred             HHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHh
Q 011783          429 GGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF  468 (477)
Q Consensus       429 ~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  468 (477)
                      +.|.+.++.          ||+..|.+.++..+++.+...
T Consensus       160 l~g~l~~~~----------g~~~~f~~~~~~~~~~~l~~~  189 (475)
T TIGR00924       160 LAGVIAENY----------GYHVGFNLAAVGMVIGLLTFF  189 (475)
T ss_pred             HHHHHHHhc----------ChHHHHHHHHHHHHHHHHHHH
Confidence            999999877          899999988876666654443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.37  E-value=1.2e-11  Score=117.50  Aligned_cols=147  Identities=15%  Similarity=0.127  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHH
Q 011783           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (477)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~  121 (477)
                      .++...+..++............|.+.+|.|.+..+      .|.+.+...++..+..++.|++.||+|+|+.+..+.+.
T Consensus       206 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~  279 (382)
T PRK11128        206 TVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSAST------IGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAIC  279 (382)
T ss_pred             hHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            344444444444444455556667677889999888      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHH-HHhHHHHHHHHhHHHHhhh
Q 011783          122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQ  195 (477)
Q Consensus       122 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~  195 (477)
                      .+++.++.+.+++.+.+++..++.|++.+...+. ..++.+. +++++++..+..+ ...++|..+||.++|.+.+
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~  354 (382)
T PRK11128        280 GVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ  354 (382)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998888888999999999999999998887777 8888886 5667789999876 5667888999999999998

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.37  E-value=9.3e-12  Score=121.59  Aligned_cols=149  Identities=16%  Similarity=0.169  Sum_probs=112.6

Q ss_pred             hHHHHHHHHHHHhhhchhchHhHHHH-HHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHH
Q 011783           41 TELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (477)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~  119 (477)
                      +.++.+.+..++...........+|. +.+++|.+..+      .++..+...++..++.+++|+++||+|||+.+....
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~------a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~  331 (467)
T PRK09556        258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKED------AINTFTLFEIGALVGSLLWGWLSDLANGRRALVACI  331 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            34555666666655555556677784 55679999988      899999999999999999999999999998877665


Q ss_pred             HHHHHHHHH--HHhhhhHHHHHHHHHHhhhcc-cchhhHHHHhhhhccccchhhHHHHHHHHhHH-HHHHHHhHHHHhhh
Q 011783          120 ASVVIFNTL--FGLSVNFWMAVLTRFLLGSLN-GLLGPIKAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGGFLAQ  195 (477)
Q Consensus       120 ~~~~i~~~~--~~~~~~~~~l~~~r~l~G~~~-g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~  195 (477)
                      .+..++...  ....++.+.+.+.+++.|++. +..........|.+|+++|+++.|+.+....+ |..++|.+.|.+.+
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~  411 (467)
T PRK09556        332 ALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD  411 (467)
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence            444433322  223456667778888888653 33333356777999999999999999988886 77999999999988

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.37  E-value=7.4e-11  Score=112.44  Aligned_cols=167  Identities=12%  Similarity=-0.016  Sum_probs=123.9

Q ss_pred             chhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 011783          272 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA  351 (477)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  351 (477)
                      +|+++...+..++..+.........+.+..      +++.++.+.+++.+...+...+.++ +.|++.||+|||+++..+
T Consensus         2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~s~~~~~~~~~~~~l~~~l~~~-~~G~laDr~grr~vl~~~   74 (393)
T PRK11195          2 SKGFYAIMAAQFFSALADNALLFAAIALLK------ELHYPDWSQPLLQMFFVLAYIVLAP-FVGAFADSFPKGRVMFIA   74 (393)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH------HcCCcHHHHHHHHHHHHHHHHHHHh-hhhHhhhccCCchhhHHH
Confidence            355666666666655544333333333332      2677888899999999999999988 999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHH
Q 011783          352 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGG  431 (477)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g  431 (477)
                      ..+..++.+.......     .    ...-++.+.+.+...|...+++.|.+|+++|++++|+.+....++..+||.++|
T Consensus        75 ~~~~~~~~~~~~~~~~-----~----~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG  145 (393)
T PRK11195         75 NGIKLLGCLLMLFGIH-----P----LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGG  145 (393)
T ss_pred             HHHHHHHHHHHHHHHH-----H----HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8887776655444322     1    222244577888899999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhccccCCCCchHHHHHHHHHHHHHHH
Q 011783          432 ALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVL  465 (477)
Q Consensus       432 ~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  465 (477)
                      .+.++.           +...+.+.+.+.+++.+
T Consensus       146 ~l~~~~-----------~~~~~~i~~~~~~~~~~  168 (393)
T PRK11195        146 ALADPH-----------AEAALAVCALIYLLAAL  168 (393)
T ss_pred             HHHHHH-----------HHHHHHHHHHHHHHHHH
Confidence            999853           44555555554444433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.36  E-value=3.5e-11  Score=118.51  Aligned_cols=166  Identities=16%  Similarity=0.048  Sum_probs=129.1

Q ss_pred             HHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 011783          281 VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLT  360 (477)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  360 (477)
                      ..++............|.+..      ++|.++.+.++..+...++..++.+ +.+++.||+|||+.+..+..+..++.+
T Consensus        10 ~~~~~~~~~~~~~~~~p~~~~------~~g~s~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~~~~~~~   82 (485)
T TIGR00711        10 GTFMAVLDSTIVNVAIPTIAG------DLGSSLSQVQWVITSYMLANAISIP-LTGWLAKRFGTRRLFLISTFAFTLGSL   82 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH------hcCCChhhhhHHHHHHHHHHHHHHH-hHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            333333333344444454443      3899999999999999999999988 899999999999999999888887777


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 011783          361 SYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKR  440 (477)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~  440 (477)
                      ......+      ...+.+..++.+++.+...+...+++.+.+|+++|+++.++......+|..++|.++|++.++.   
T Consensus        83 ~~~~~~~------~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---  153 (485)
T TIGR00711        83 LCGVAPN------LELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY---  153 (485)
T ss_pred             HHhCcCC------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc---
Confidence            6655432      2234445556677778888899999999999999999999999999999999999999998876   


Q ss_pred             ccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          441 LDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       441 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                             +|++.|++.+.+.++..++..+
T Consensus       154 -------~w~~~f~~~~~~~~~~~~~~~~  175 (485)
T TIGR00711       154 -------HWRWIFLINVPIGIIVVVVAFF  175 (485)
T ss_pred             -------CceehhhhhhHHHHHHHHHHHH
Confidence                   8999999887777666555443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.36  E-value=9.4e-11  Score=112.62  Aligned_cols=144  Identities=11%  Similarity=0.042  Sum_probs=115.6

Q ss_pred             CccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 011783          307 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL  386 (477)
Q Consensus       307 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (477)
                      +++|.++.+.+++.+...++..++++ +.+++.||+|||+.+..+..+..++.+...+..+      ...+....++.++
T Consensus        40 ~~~~~s~~~~g~~~~~~~~~~~~~~~-~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~l~G~  112 (405)
T TIGR00891        40 GEFGLTTVDAASLISAALISRWFGAL-MFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPG------YITMFIARLVIGI  112 (405)
T ss_pred             HHhCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHh
Confidence            33899999999999999999999998 8999999999999999888887777666655432      1233444555667


Q ss_pred             hhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHH
Q 011783          387 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVL  465 (477)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  465 (477)
                      +.+...+...+++.|..|+++|+++.++.+....+|..+++.+.+.+.+..+.        +|+..|.+.++..++..+
T Consensus       113 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~--------~w~~~f~~~~~~~~~~~~  183 (405)
T TIGR00891       113 GMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGD--------GWRALFFISILPIIFALW  183 (405)
T ss_pred             hhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--------cHHHHHHHHHHHHHHHHH
Confidence            77778888889999999999999999999999999999999999998876510        388888876655555443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.35  E-value=1.1e-10  Score=111.62  Aligned_cols=145  Identities=12%  Similarity=0.076  Sum_probs=115.8

Q ss_pred             ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 011783          308 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLL  387 (477)
Q Consensus       308 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (477)
                      ++|.+..+.+...+...++..++++ +.+++.||+|||+.+..+..+..++........+.     + .+.+..++.+.+
T Consensus        32 ~~~~s~~~~~~~~~~~~~~~~~~~~-~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~-----~-~~~~~~~l~g~~  104 (392)
T PRK10473         32 DLNASEAQLHIAFSVYLAGMAAAML-FAGKIADRSGRKPVAIPGAALFIIASLLCSLAETS-----S-LFLAGRFLQGIG  104 (392)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHH-hHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcH-----H-HHHHHHHHHHhh
Confidence            3889999999999999999999888 89999999999999998888777776665543321     1 223333445566


Q ss_pred             hHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHH
Q 011783          388 SVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT  467 (477)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  467 (477)
                      .+...+....++.+.+|+++|+++.++.+....++..++|.+++.+.+..          +|+..|++.+++.++..++.
T Consensus       105 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~----------g~~~~~~~~~~~~~i~~~~~  174 (392)
T PRK10473        105 AGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF----------PWQSLFYTMAAMGILVLLLS  174 (392)
T ss_pred             hhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----------ChHHHHHHHHHHHHHHHHHH
Confidence            66777788889999999999999999999999999999999998887765          88899988887777666654


Q ss_pred             hh
Q 011783          468 FK  469 (477)
Q Consensus       468 ~~  469 (477)
                      ..
T Consensus       175 ~~  176 (392)
T PRK10473        175 LF  176 (392)
T ss_pred             HH
Confidence            43

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.35  E-value=1.1e-10  Score=114.66  Aligned_cols=168  Identities=15%  Similarity=0.080  Sum_probs=126.8

Q ss_pred             HHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 011783          279 IIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPL  358 (477)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  358 (477)
                      ++..++...-........|....      ++|.+..+.++..+.+.++.....+ ..+++.||+|||+.+..+..+..++
T Consensus        12 ~~~~~~~~ld~tiv~~a~p~i~~------~l~~s~~~~~~~~~~~~l~~~~~~~-~~G~l~D~~Grk~~l~~~~~~~~~~   84 (495)
T PRK14995         12 VLVYIPVAIDATVLHVAAPTLSM------TLGASGNELLWIIDIYSLVMAGMVL-PMGALGDRIGFKRLLMLGGTLFGLA   84 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH------HhCCCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHHHHHHH
Confidence            33444433333444444554443      3888999999999999999888887 8899999999999999999988888


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcC-CcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHh
Q 011783          359 LTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAV-DQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWA  437 (477)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  437 (477)
                      .+......+.      ..+++.-.+.+++.+...+.....+.+.+ |+++|+++.|+......+|..+||.++|.+.++.
T Consensus        85 ~~~~~~a~~~------~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~  158 (495)
T PRK14995         85 SLAAAFSPTA------SWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF  158 (495)
T ss_pred             HHHHHHcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            7776655431      13333444556666777777666665554 7799999999999999999999999999999887


Q ss_pred             hhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          438 QKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       438 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                                ||++.|++...+.++..++..+
T Consensus       159 ----------gwr~~f~i~~~~~~~~~~l~~~  180 (495)
T PRK14995        159 ----------YWGSVFLINVPIVLVVMGLTAR  180 (495)
T ss_pred             ----------ChHHHHHHHHHHHHHHHHHHHH
Confidence                      9999999988777776665544

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.34  E-value=3.3e-09  Score=97.82  Aligned_cols=343  Identities=12%  Similarity=0.043  Sum_probs=207.9

Q ss_pred             HHHHHH-hcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 011783           65 YFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF  143 (477)
Q Consensus        65 ~~~~~~-~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~  143 (477)
                      |++.+. .|.+.+|-     ..-+.-+..-.+....++...++|..+.|++++++.+...+...+..+.++...+-+.-+
T Consensus        28 ~yL~~~~kn~T~~qv-----~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~  102 (412)
T PF01770_consen   28 PYLTGPDKNFTEEQV-----NNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQF  102 (412)
T ss_pred             HHHcCCccCCCHHHH-----HHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHH
Confidence            455554 78887771     234556666677888899999999999999999999999999999999999999999999


Q ss_pred             HhhhcccchhhHHHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccc-cCCcccccccccccccchHHHHHH
Q 011783          144 LLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE-KYPNLFSSESLFGKFPYFLPCLCI  222 (477)
Q Consensus       144 l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  222 (477)
                      +-|++.+.-..-.+++-...|+++-.++.+...++.-+|-.++.++|-.+..... +++.....      ......+.++
T Consensus       103 ~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~i------sl~~~~~a~~  176 (412)
T PF01770_consen  103 FYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYI------SLASVSLALL  176 (412)
T ss_pred             HHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH------HHHHHHHHHH
Confidence            9999988855558999888899999999999999999999999999988876211 11111110      0011223344


Q ss_pred             HHHhhcccccc---CCCCCCcc---chhhhhhhhhhcc---chhhcc-----------cCCchhhhhhcchhhHHHHHHH
Q 011783          223 SLFAFGETLHR---HNDDDDSC---DVSYDALESASAE---VKEEEG-----------REATPKKSLLKNWPLMSSIIVY  282 (477)
Q Consensus       223 ~~~~l~~~~~~---~~~~~~~~---~~~~~~~~~~~~~---~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~  282 (477)
                      ..+++|..++.   ++..+++.   +...++.++..++   .++...           ......++..++|.++.-.+-+
T Consensus       177 ~~~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWW  256 (412)
T PF01770_consen  177 IALFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWW  256 (412)
T ss_pred             HHHHcCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence            44567754432   11111000   0000000000000   000000           0112344556778777766666


Q ss_pred             HHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH--HH
Q 011783          283 CVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPL--LT  360 (477)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~  360 (477)
                      .+..+......++....-.+.   ...+-+..-.|.+-+...+.+.+..+ ..+++..++++...+.++......+  ++
T Consensus       257 a~atcgy~qv~nYvQ~LW~~v---~~~~~~~vYNG~VeA~~tllgA~~al-~~g~v~~~w~~~~~l~l~~~S~l~a~~L~  332 (412)
T PF01770_consen  257 AFATCGYYQVINYVQSLWDTV---PPSDNESVYNGAVEAASTLLGAIAAL-LAGYVKVNWDRWGELALGVFSLLQAGLLF  332 (412)
T ss_pred             HHHHhHHHHHHHHHHHHHHhc---CCCCCCcccchHHHHHHHHHHHHHHH-HHhHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            665555555444444333221   11233444567787888888888877 7788866666655555444433323  33


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhh
Q 011783          361 SYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPA  428 (477)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~  428 (477)
                      ++....+     .| ...+..++.........+....-++.....|.-|.+.|+.+++..+-+.+-..
T Consensus       333 lm~~t~~-----Iw-v~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQtilT~  394 (412)
T PF01770_consen  333 LMSFTGN-----IW-VCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQTILTL  394 (412)
T ss_pred             HHHHhhH-----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHHHheEE
Confidence            3333322     22 23333333333444555555666666677888999999988776655554433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.34  E-value=3e-11  Score=118.80  Aligned_cols=147  Identities=16%  Similarity=0.173  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHH
Q 011783           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (477)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~  122 (477)
                      ++...+..+.............|.+.+++|.+..+      .++......++..++.++.|+++||+|||+.+.++.++.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  359 (481)
T TIGR00879       286 FLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDH------AFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGM  359 (481)
T ss_pred             HHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            33444444444455555666778888999999877      889999999999999999999999999999999998888


Q ss_pred             HHHHHHHHhh-----h------hHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHH
Q 011783          123 VIFNTLFGLS-----V------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (477)
Q Consensus       123 ~i~~~~~~~~-----~------~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  190 (477)
                      +++.++.++.     +      +...+....++.+.......+. ..++.|.+|+++|++++++.+....+|.+++|.+.
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~  439 (481)
T TIGR00879       360 AICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLF  439 (481)
T ss_pred             HHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8777766521     1      2333333333333333334455 77889999999999999999999999999999999


Q ss_pred             HHhhh
Q 011783          191 GFLAQ  195 (477)
Q Consensus       191 ~~l~~  195 (477)
                      +.+.+
T Consensus       440 ~~~~~  444 (481)
T TIGR00879       440 PTMLE  444 (481)
T ss_pred             HHHHH
Confidence            99887

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.33  E-value=1.7e-10  Score=112.21  Aligned_cols=184  Identities=18%  Similarity=0.196  Sum_probs=146.1

Q ss_pred             hhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 011783          267 KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM  346 (477)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  346 (477)
                      ...+|+|.+..+.+...+.++.......-.+.+..+      ..-|+...+++.....+..++.++ .+|.+.||++||+
T Consensus         4 ~aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~------lt~S~~~valv~~a~~LP~~Llsl-~aG~laDr~drrr   76 (524)
T PF05977_consen    4 FAPLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQ------LTGSPLMVALVQAASTLPILLLSL-FAGALADRFDRRR   76 (524)
T ss_pred             cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhCCHHHHHHHHHHHHHHHHHHHH-HHHHHhhcccchH
Confidence            345789999988888888877776666666655443      456788899999999999988888 8999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHh
Q 011783          347 VARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAG  426 (477)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~  426 (477)
                      .+...-.+..+....+........... ..+++..++.+.+.....|..++.+.+.+|+++...++++.+...++...+|
T Consensus        77 ili~~~~~~~~~~~~L~~l~~~~~~~~-~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iG  155 (524)
T PF05977_consen   77 ILILSQLLRALVALLLAVLAFFGLLSP-WLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIG  155 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhcc
Confidence            999988877766555544433322222 3455556667788889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHh
Q 011783          427 PAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF  468 (477)
Q Consensus       427 ~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  468 (477)
                      |.++|.++...          |...+|.+.++..++...+..
T Consensus       156 PalgG~Lva~~----------G~~~~f~inalsfl~~i~~l~  187 (524)
T PF05977_consen  156 PALGGILVAFF----------GAAAAFLINALSFLISILALL  187 (524)
T ss_pred             chHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988          777888888777666555443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.33  E-value=1.1e-10  Score=111.85  Aligned_cols=150  Identities=13%  Similarity=0.114  Sum_probs=117.0

Q ss_pred             CccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 011783          307 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL  386 (477)
Q Consensus       307 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (477)
                      ++++.+..+.+...+.+.++..++++ ..+++.||+|||+.+..+..+..++.+......+.      ..+.+.-++.++
T Consensus        44 ~~~~~~~~~~~~~~s~~~~~~~~~~~-~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~------~~l~~~r~l~Gi  116 (413)
T PRK15403         44 RDFNADVSLAPASVSLYLAGGMALQW-LLGPLSDRIGRRPVLITGALIFTLACAATLFTTSM------TQFLIARFIQGT  116 (413)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHH-hhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHH
Confidence            34788999999999999999999998 89999999999999999888777776665544321      123333344445


Q ss_pred             hhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHH
Q 011783          387 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM  466 (477)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  466 (477)
                      +.+...+....+..|.+|++++++++++.+....++..++|.+++.+.++.          ||+..|++.+++.+++.+.
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~----------gw~~~f~~~~~~~~i~~~~  186 (413)
T PRK15403        117 SICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV----------HWKVLFAIIAVMGLIAFVG  186 (413)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CHHHHHHHHHHHHHHHHHH
Confidence            544445566678888999999999999999999999999999999988876          8999999988887777665


Q ss_pred             Hhhhhhhc
Q 011783          467 TFKPFLAQ  474 (477)
Q Consensus       467 ~~~~~~~~  474 (477)
                      ..+ ..||
T Consensus       187 ~~~-~lp~  193 (413)
T PRK15403        187 LLL-AMPE  193 (413)
T ss_pred             HHH-hCCC
Confidence            433 3444

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.32  E-value=1.3e-10  Score=113.30  Aligned_cols=174  Identities=8%  Similarity=-0.025  Sum_probs=132.8

Q ss_pred             chhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHH
Q 011783          272 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-LGPIMVARI  350 (477)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~  350 (477)
                      .+.++..+...+...+..+....+.+.|+.+.     +|++..+++...........+..+ ++|+++|| +|||+++..
T Consensus        13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~-----lg~~~~~a~~i~~~~~~~~~~~~~-~~G~laDr~~G~r~~~~~   86 (489)
T PRK10207         13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQ-----LGFSQEQAFITFGAFAALVYGLIS-IGGYVGDHLLGTKRTIVL   86 (489)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHh-hHHHhhhhccchHHHHHH
Confidence            34566666666666777777778888887754     888998888888877767767666 89999999 999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcc--hhhHHhHHHHHHHHHHHHHhhh
Q 011783          351 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQD--QRGAANGIAMTGMSLFKAAGPA  428 (477)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~g~~~~~~  428 (477)
                      +.++..++.+...+.....  .   .+.+...+.+.+.+...|...+++.|.+|++  +|+++.++.....++|.++||.
T Consensus        87 g~~~~~~g~~~~~~~~~~~--~---ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~  161 (489)
T PRK10207         87 GAIVLAIGYFMTGMSLLKP--D---LIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLS  161 (489)
T ss_pred             HHHHHHHHHHHHHHhccch--h---HHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHH
Confidence            9999988877766543211  1   1222333445667777788889999999877  4578899999999999999999


Q ss_pred             HHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHH
Q 011783          429 GGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM  466 (477)
Q Consensus       429 ~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  466 (477)
                      ++|++.++.          ||++.|++.++..+++.+.
T Consensus       162 l~g~l~~~~----------gw~~~F~i~~i~~~~~~~~  189 (489)
T PRK10207        162 LAPVIADKF----------GYSVTYNLCGAGLIIALLV  189 (489)
T ss_pred             HHHHHHHhh----------ChHHHHHHHHHHHHHHHHH
Confidence            999999887          8999998876544444433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.32  E-value=1.3e-10  Score=109.18  Aligned_cols=148  Identities=12%  Similarity=0.061  Sum_probs=108.2

Q ss_pred             ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 011783          308 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLL  387 (477)
Q Consensus       308 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (477)
                      ++|.|..+.|++.+...++..++++ ..|++.||+|||+.+.........+.... ....     .+..+.+.-++.+++
T Consensus        20 ~~~~s~~~~g~~~s~~~~g~~i~~~-~~G~l~Dr~grr~~~~~~~~~~~~~~~~~-~~~~-----~~~~l~~~R~l~G~g   92 (368)
T TIGR00903        20 DIDVSKEELGLLAITYPAAFLALTI-PSGLLLDRAFKRWFLFGSLATFAAAAGRL-LDPF-----NYEWLLACQLLAALG   92 (368)
T ss_pred             HhCcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHccchHHHHHHHHHHHHHHHHH-HHhc-----cHHHHHHHHHHHHhH
Confidence            3899999999999999999999998 78999999998887655444333322211 1101     122334444444555


Q ss_pred             hHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHH
Q 011783          388 SVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT  467 (477)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  467 (477)
                      .+. .+.......|.+|+++|++++++.+....+|..+++.+.+.+.+..          ||+..|++.+++.++..++.
T Consensus        93 ~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~----------gWr~~f~~~~~l~~~~~~~~  161 (368)
T TIGR00903        93 QPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAG----------GLQLLIIPIAAVAAAGIILV  161 (368)
T ss_pred             hHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----------chHHHHHHHHHHHHHHHHHH
Confidence            554 3444555688899999999999999999999999999999998766          99999999888877766655


Q ss_pred             hhhhhhc
Q 011783          468 FKPFLAQ  474 (477)
Q Consensus       468 ~~~~~~~  474 (477)
                      ++ ..||
T Consensus       162 ~~-~lp~  167 (368)
T TIGR00903       162 LA-ALPA  167 (368)
T ss_pred             HH-HcCC
Confidence            44 4554

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.32  E-value=2.2e-10  Score=110.08  Aligned_cols=146  Identities=12%  Similarity=0.041  Sum_probs=115.4

Q ss_pred             CccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 011783          307 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL  386 (477)
Q Consensus       307 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (477)
                      +++|.++.+.+...+...++..++++ +.+.+.||+|||+.+..+.....++........+.      ..+....++.+.
T Consensus        41 ~~~~~s~~~~~~~~~~~~~~~~~~~~-~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~------~~l~~~~~l~G~  113 (406)
T PRK15402         41 EDFNAGAEWVPTSMTAYLAGGMFLQW-LLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSI------EQFTLLRFLQGI  113 (406)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccH------HHHHHHHHHHHh
Confidence            44899999999999999999999988 88999999999999998887777776665443321      123333444455


Q ss_pred             hhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHH
Q 011783          387 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM  466 (477)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  466 (477)
                      ..+...+.......|.+|+++|+++.++......++..++|.+.+.+.++.          +|+..|++.+++.+++.+.
T Consensus       114 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~----------~w~~~~~~~~~~~~~~~~~  183 (406)
T PRK15402        114 GLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVL----------PWRGMFVLFAALAALSFFG  183 (406)
T ss_pred             HhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----------CccHHHHHHHHHHHHHHHH
Confidence            555666777888889999999999999998888899999999999988876          8999999888887776665


Q ss_pred             Hhh
Q 011783          467 TFK  469 (477)
Q Consensus       467 ~~~  469 (477)
                      ...
T Consensus       184 ~~~  186 (406)
T PRK15402        184 LWR  186 (406)
T ss_pred             HHH
Confidence            443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.32  E-value=1.2e-10  Score=110.64  Aligned_cols=143  Identities=15%  Similarity=0.155  Sum_probs=119.0

Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh
Q 011783          309 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS  388 (477)
Q Consensus       309 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (477)
                      +|.++.+.+...+...++..++++ ..+++.||+|||+.+..+..+..++........+.      ..+....++.+++.
T Consensus        21 ~~~s~~~~~~~~~~~~~~~~~~~~-~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~------~~~~~~~~l~g~~~   93 (377)
T PRK11102         21 FGVSAGSVQMTLSAYILGFAIGQL-FYGPMADSFGRKPVILGGTLVFALAAVACALAQTI------DQLIYMRFLHGLAA   93 (377)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHH-hhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccH------HHHHHHHHHHHHHH
Confidence            799999999999999999999988 88999999999999999988888887776554321      12334445556777


Q ss_pred             HHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHh
Q 011783          389 VSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF  468 (477)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  468 (477)
                      +...+...++..+.+|+++|+++.++.+....+|..++|.+.+.+.+..          +|+..|++.+++.++..++..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~  163 (377)
T PRK11102         94 AAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF----------SWHAIFWVLALAAILAAALVF  163 (377)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------ChHHHHHHHHHHHHHHHHHHH
Confidence            7777888889999999999999999999999999999999999998877          898999888877777655544

>TIGR00896 CynX cyanate transporter

Probab=99.31  E-value=9.1e-11  Score=110.51  Aligned_cols=151  Identities=12%  Similarity=0.053  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhc-CCchhhHHHHHH
Q 011783           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVIIMGTAS  121 (477)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-Grr~~~~~~~~~  121 (477)
                      ++.+.+..++...........+|.+.++.|.+..+      .+.+.+...++..+++++.|++.||+ +||+.+.++.++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~------~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~  272 (355)
T TIGR00896       199 AWQVTVFFGLQSGLYYSLIGWLPAILISHGASAAT------AGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVL  272 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Confidence            33333333444444455566788788888998888      99999999999999999999999999 567777788888


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhcc-ccchhhHHHHHHHHhHHHHHHHHhHHHHhhhcccc
Q 011783          122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (477)
Q Consensus       122 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  199 (477)
                      .+++.+...+.++..... .-++.|++.|...|. .+.+.+..+ +++++...++.+....+|..++|.+.|.+.++..+
T Consensus       273 ~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~  351 (355)
T TIGR00896       273 QLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN  351 (355)
T ss_pred             HHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            888777776665433322 446789998888776 676665554 56778999998888899999999999999986544


Q ss_pred             C
Q 011783          200 Y  200 (477)
Q Consensus       200 ~  200 (477)
                      |
T Consensus       352 ~  352 (355)
T TIGR00896       352 W  352 (355)
T ss_pred             c
Confidence            4

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK09952 shikimate transporter; Provisional

Probab=99.31  E-value=4e-11  Score=115.98  Aligned_cols=142  Identities=18%  Similarity=0.220  Sum_probs=101.7

Q ss_pred             HHHHhhhchhchHhHHHH-HHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHH
Q 011783           49 IVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNT  127 (477)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~  127 (477)
                      ..+...+.........|. +.+++|.+...      ...+.....+...++.++.|+++||+|||+++..+.++..++.+
T Consensus       258 ~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~------~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~  331 (438)
T PRK09952        258 LRLCELLTMYIVTAFALNYSTQNLGLPREL------FLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAF  331 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            334444444445556664 45678887765      55556666677788899999999999999999888776655544


Q ss_pred             HHHh---h-hhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHH-HHhHHHHHHHHhHHHHhhhc
Q 011783          128 LFGL---S-VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQP  196 (477)
Q Consensus       128 ~~~~---~-~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~  196 (477)
                      ....   . ++.+.+++..++.|++.+...+. .++++|.+|.+.|+.+.++.+ .+..+|..++|.+.+++.+.
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~  406 (438)
T PRK09952        332 PFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTY  406 (438)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3322   1 23444455566777877776666 899999999999999988854 44558999999999999873

>PRK11043 putative transporter; Provisional

Probab=99.31  E-value=3.1e-10  Score=108.86  Aligned_cols=165  Identities=18%  Similarity=0.059  Sum_probs=121.8

Q ss_pred             HHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 011783          285 FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPY  364 (477)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (477)
                      ..........+.|.+..   ..+++|.++.+.++..+...++..++++ +.+++.||+|||+.+..+..+..++.+...+
T Consensus        15 ~~~~~~~~~~~~p~~~~---i~~~~~~s~~~~g~~~s~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~   90 (401)
T PRK11043         15 SMLGFLATDMYLPAFKA---IQADLQTSASAVSASLSLFLAGFALGQL-LWGPLSDRYGRKPVLLAGLSLFALGSLGMLW   90 (401)
T ss_pred             HHHHHHHHHHHHhhHHH---HHHHHCCCHHHHHHHHHHHHHHHHHHHH-hhhhHHhhcCCcHHHHHHHHHHHHHHHHHHH
Confidence            33333444444554311   2234899999999999999999999998 8999999999999999888777776665554


Q ss_pred             HHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcccc
Q 011783          365 IAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDAS  444 (477)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~  444 (477)
                      ..+      ...+.+..++.+++.+...+....+..+.+|++++++..+..+....++..++|.+.+.+.+..       
T Consensus        91 ~~~------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-------  157 (401)
T PRK11043         91 VES------AAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF-------  157 (401)
T ss_pred             hcC------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------
Confidence            332      1122233344445555556666778889999999999999999889999999999999998877       


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          445 FLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       445 ~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                         ||+..|++.+++.++..++...
T Consensus       158 ---g~~~~~~~~~~~~~~~~~~~~~  179 (401)
T PRK11043        158 ---GWQAIFATLFAITLLLILPTLR  179 (401)
T ss_pred             ---ChHHHHHHHHHHHHHHHHHHHH
Confidence               8999998888777776655443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.30  E-value=1.2e-10  Score=112.98  Aligned_cols=147  Identities=10%  Similarity=0.047  Sum_probs=111.3

Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh
Q 011783          309 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS  388 (477)
Q Consensus       309 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (477)
                      .|.++.+.++..+...++..++.+ ..+++.||+|||+.+..+.++..++.+..........  ....+.+..++.+++.
T Consensus        56 ~g~s~~~~g~~~~~~~~~~~~~~~-~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~g~~~  132 (438)
T TIGR00712        56 QGFSKGELGFALSAISIAYGFSKF-IMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATS--SIAIMFVLLFLNGWFQ  132 (438)
T ss_pred             cCCCHhHhHHHHHHHHHHHHHhhh-ccchhhhccCCceehHHHHHHHHHHHHHHhccccccc--hHHHHHHHHHHHHHHh
Confidence            589999999999999999999988 8999999999999988888777777665544321111  1112223333445555


Q ss_pred             HHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHH-hhhhccccCCCCchHHHHHHHHHHHHHHHHH
Q 011783          389 VSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSW-AQKRLDASFLPGSQMVFFVLNVVEAIGVLMT  467 (477)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  467 (477)
                      +...+.....+.+.+|+++|++++|+.+....+|+.++|.+.+...+. .          +|+..|++.+++.++..+..
T Consensus       133 g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~----------~w~~~f~~~~~~~~i~~~~~  202 (438)
T TIGR00712       133 GMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFN----------DWHAALYFPAICAIIVALFA  202 (438)
T ss_pred             hcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhh----------hhHHHHHHHHHHHHHHHHHH
Confidence            666677777888999999999999999999999999999888766543 3          78999999888777755444


Q ss_pred             h
Q 011783          468 F  468 (477)
Q Consensus       468 ~  468 (477)
                      .
T Consensus       203 ~  203 (438)
T TIGR00712       203 F  203 (438)
T ss_pred             H
Confidence            3

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.30  E-value=3.9e-10  Score=106.76  Aligned_cols=175  Identities=13%  Similarity=0.030  Sum_probs=121.3

Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 011783          275 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  354 (477)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  354 (477)
                      ++...+.+++.......+..+.|.++.     +++|+|+.+.+++.+...++..++++ ..+++.||+|||+.+..+.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~   76 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIK-----DDLGLSTAQLGNLVAVPVLAGAVLRI-ILGFLVDKFGPRYTTTLSLLL   76 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHH-----HHhCCCHHHhhHhhHHHHHHHHHHHH-HHHHHHHHhCchHHHHHHHHH
Confidence            444555555555555566666664343     33899999999999999999999998 899999999999999999988


Q ss_pred             HHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHH
Q 011783          355 TIPLLTSYPYIA-MLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL  433 (477)
Q Consensus       355 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l  433 (477)
                      ..++.+...+.. +.     + .+.+..++.+++.. ..+....++.+.+|+++|+++.++.....++|..+++.+.+.+
T Consensus        77 ~~i~~~~~~~~~~~~-----~-~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  149 (366)
T TIGR00886        77 LAIPCLWAGLAVQSY-----S-VLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPI  149 (366)
T ss_pred             HHHHHHHHHHHhhhH-----H-HHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            888877766654 21     1 22223333344433 3455677889999999999999999988899999998888887


Q ss_pred             HHHhhhhccccCCCCchHHH-HHHHHHHHH
Q 011783          434 FSWAQKRLDASFLPGSQMVF-FVLNVVEAI  462 (477)
Q Consensus       434 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~  462 (477)
                      ..............+|++.| +..+++..+
T Consensus       150 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  179 (366)
T TIGR00886       150 IGSLIFGAGLPAHLAWGWAFVIVPAGILLL  179 (366)
T ss_pred             HHHHHhcccccccccccchhHHHHHHHHHH
Confidence            76532221100011677887 433444333

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.30  E-value=6.2e-10  Score=106.45  Aligned_cols=185  Identities=8%  Similarity=-0.077  Sum_probs=132.0

Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 011783          275 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  354 (477)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  354 (477)
                      +......++.+.+.........|.+.      +++|.+..+.|++.+...++..++++ ..+++.||+|+|+.+..+..+
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~------~~~~~s~~~~g~l~s~~~~g~~i~~~-~~g~l~~r~G~r~~~~~g~~l   77 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQ------QAFTLTAFQAALVQSAFYGGYFIMAI-PAAIFMKKLSYKAGILLGLFL   77 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHH------HHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCchHHHHHHHHH
Confidence            34444555555544444445555443      33899999999999999999999999 889999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHH
Q 011783          355 TIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALF  434 (477)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  434 (477)
                      ..++.+.+......+   .+..+....++.+.+.+...+....+..+..|++++++..++.+....+|..++|.+.+.+.
T Consensus        78 ~~~g~~l~~~~~~~~---~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885        78 YALGAFLFWPAAEIM---NYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             HHHHHHHHHHHHhhc---cHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888876654433211   12234444555667777888888888888899999999999999999999999999999886


Q ss_pred             HHhhhhcc----------------ccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          435 SWAQKRLD----------------ASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       435 ~~~~~~~~----------------~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      ........                .....+|+.+|.+.+++.++..++..+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~  205 (410)
T TIGR00885       155 LSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIML  205 (410)
T ss_pred             hcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43210000                000016889998888877766555433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.29  E-value=2.8e-10  Score=110.09  Aligned_cols=136  Identities=9%  Similarity=-0.051  Sum_probs=112.9

Q ss_pred             CccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 011783          307 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL  386 (477)
Q Consensus       307 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (477)
                      +++|.++.+.++..+...++..++++ +.+++.||+|||+.+..+..+..++.+...+..+      ...+.+.-++.++
T Consensus        46 ~~~~~s~~~~~~~~~~~~~~~~l~~~-~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~  118 (426)
T PRK12307         46 ADLGLTDMEGAFLATAAFIGRPFGGA-LFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASG------VIMLTLSRFIVGM  118 (426)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHH
Confidence            44899999999999999999999998 8999999999999999999988888776666543      2234444455667


Q ss_pred             hhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHH
Q 011783          387 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVV  459 (477)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~  459 (477)
                      +.+...+....++.|..|+++|+++.++......+|..+++.+.+.+.+..          +|+..|++....
T Consensus       119 g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~----------~w~~~f~i~~~~  181 (426)
T PRK12307        119 GMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAY----------GWRAAFFVGLLP  181 (426)
T ss_pred             HHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccC----------CHHHHHHHHHHH
Confidence            777788888899999999999999999999999999999999888887765          899998875443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.29  E-value=4e-11  Score=116.65  Aligned_cols=157  Identities=14%  Similarity=0.100  Sum_probs=104.1

Q ss_pred             hHHHHHHHHHHHhhhchhchHhHHHHHHH-HhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhc--CCchhh-H
Q 011783           41 TELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVI-I  116 (477)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~--Grr~~~-~  116 (477)
                      +.++...+..++...........+|.+.+ +.|.+..+      .++..+.+.++..++.++.|+++||+  |||+.. .
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~------~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~  326 (452)
T PRK11273        253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV  326 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHH
Confidence            33445555555555555566677886555 47888888      89999999999999999999999999  555432 2


Q ss_pred             HHHHHHHHHHHHHHh--hhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHH-HHHhHHHH
Q 011783          117 MGTASVVIFNTLFGL--SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLI-IGPALGGF  192 (477)
Q Consensus       117 ~~~~~~~i~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~  192 (477)
                      ....+..++.+....  .++.+...+..++.|.+....... ..+..|.+|+++|+++.|+.+....+|.. ++|.+.|.
T Consensus       327 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~  406 (452)
T PRK11273        327 FFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY  406 (452)
T ss_pred             HHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHH
Confidence            222333333332222  234444445555555542222222 45678999999999999999988888765 58999999


Q ss_pred             hhhccccCCccccccccc
Q 011783          193 LAQPAEKYPNLFSSESLF  210 (477)
Q Consensus       193 l~~~~~~~~~~~~~~~~~  210 (477)
                      +.+       .++|+..|
T Consensus       407 l~~-------~~g~~~~f  417 (452)
T PRK11273        407 TVD-------FFGWDGGF  417 (452)
T ss_pred             HHH-------HhcchHHH
Confidence            998       45555555

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.28  E-value=4e-10  Score=107.77  Aligned_cols=144  Identities=19%  Similarity=0.086  Sum_probs=112.6

Q ss_pred             CccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 011783          307 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL  386 (477)
Q Consensus       307 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (477)
                      +++|.++.+.+...+...++..++++ ..+++.||+|||+.+..+..+..++.+......+      ...+.+..++.++
T Consensus        36 ~~~~~s~~~~~~~~~~~~~~~~~~~~-~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~g~  108 (394)
T PRK11652         36 RDLNVREGAVQAVMAAYLLTYGLSQL-FYGPLSDRVGRRPVILVGMSIFILGTLVALFAHS------LTVLIAASAIQGL  108 (394)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHH-hhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc------HHHHHHHHHHHHh
Confidence            33899999999999999999999998 8999999999999999888877777665544322      1123333444455


Q ss_pred             hhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHH
Q 011783          387 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM  466 (477)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  466 (477)
                      +.+...+....+..+.+++++++++.+..+....++..++|.+.+.+.+..          ||+..|.+.+++.++..+.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~----------g~~~~f~~~~~~~~~~~~~  178 (394)
T PRK11652        109 GTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLF----------GWRACYLFLLLLGAGVTFS  178 (394)
T ss_pred             hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------ChHHHHHHHHHHHHHHHHH
Confidence            555556666777888889899999999999999999999999999988766          8999998887766655444


Q ss_pred             H
Q 011783          467 T  467 (477)
Q Consensus       467 ~  467 (477)
                      .
T Consensus       179 ~  179 (394)
T PRK11652        179 M  179 (394)
T ss_pred             H
Confidence            3

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.27  E-value=5.2e-11  Score=113.21  Aligned_cols=148  Identities=15%  Similarity=0.145  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHhhhchhchHhHHHHH-HHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCC-chhhH-HH
Q 011783           42 ELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-KPVII-MG  118 (477)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Gr-r~~~~-~~  118 (477)
                      .++.+.+..++............|.+ .+++|.+..+      .+++.+.+.++..++.++.|++.||..+ |+... ..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~  290 (379)
T TIGR00881       217 VLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEK------ASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVF  290 (379)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHH
Confidence            34445555555555555566666754 5668999888      9999999999999999999999998643 33222 22


Q ss_pred             HHH-HHHHHHHHHh--hhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhh
Q 011783          119 TAS-VVIFNTLFGL--SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (477)
Q Consensus       119 ~~~-~~i~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (477)
                      ... ..++......  ..+....++..++.|+......+. ..++.|.+|+++|+++.++.+....+|..++|.+.|.+.
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  370 (379)
T TIGR00881       291 FMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLA  370 (379)
T ss_pred             HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHH
Confidence            211 1222222222  335556666677777754444444 778899999999999999999999999999999999999


Q ss_pred             h
Q 011783          195 Q  195 (477)
Q Consensus       195 ~  195 (477)
                      +
T Consensus       371 ~  371 (379)
T TIGR00881       371 D  371 (379)
T ss_pred             H
Confidence            8

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=99.26  E-value=2.1e-10  Score=104.64  Aligned_cols=147  Identities=22%  Similarity=0.342  Sum_probs=111.3

Q ss_pred             hHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhh----cCCchhhH
Q 011783           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKPVII  116 (477)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr----~Grr~~~~  116 (477)
                      +.++.+....+...++...-..+++++.+++|++...      .+.+--+..+...+.||+.|..+||    |||||.++
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~------~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI  105 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKW------SSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFI  105 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCccc------ccccccccccccceecccccccccccccccccccchH
Confidence            5555556556666666666677788999999999988      8888888888889999999999994    89887765


Q ss_pred             H-HHHHHHHHHHHHHhhhhHHHH------------HHHHHHhhh-----cc-cchhhHHHHhhhhccccchhh-HHHHHH
Q 011783          117 M-GTASVVIFNTLFGLSVNFWMA------------VLTRFLLGS-----LN-GLLGPIKAYACEIFREEHQAL-GLSTVS  176 (477)
Q Consensus       117 ~-~~~~~~i~~~~~~~~~~~~~l------------~~~r~l~G~-----~~-g~~~~~~~~i~~~~~~~~r~~-~~~~~~  176 (477)
                      . +.+...++.++..++.++..+            .+.-++.|+     .. -...|+.+++.|...++++.+ +++.+.
T Consensus       106 ~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~  185 (498)
T KOG0637|consen  106 LAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFS  185 (498)
T ss_pred             HHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHH
Confidence            5 456667777777777654332            222333343     33 346677999999998777777 999999


Q ss_pred             HHhHHHHHHHHhHHHHh
Q 011783          177 TAWGIGLIIGPALGGFL  193 (477)
Q Consensus       177 ~~~~~g~~~g~~~~~~l  193 (477)
                      ...++|..+|..++++.
T Consensus       186 ~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  186 FFMAVGNVLGYALGSYL  202 (498)
T ss_pred             HHHHhcceeeeeccccc
Confidence            99999999999998743

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.26  E-value=1.9e-10  Score=110.70  Aligned_cols=156  Identities=13%  Similarity=0.194  Sum_probs=128.1

Q ss_pred             hHHHHHHHHHHHhhhchhchHhHHH-HHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCc--hhhHH
Q 011783           41 TELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK--PVIIM  117 (477)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr--~~~~~  117 (477)
                      +.+....++.++..-+.+.+..... +..+++|.+..+      ...+.-+..+...+|++++|++.||+|.|  +++..
T Consensus       281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~------l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~  354 (477)
T PF11700_consen  281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQ------LIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLI  354 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence            4455555555554444444444444 555689999999      88888889999999999999999999999  89888


Q ss_pred             HHHHHHHHHHHHHh--------hhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHh
Q 011783          118 GTASVVIFNTLFGL--------SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPA  188 (477)
Q Consensus       118 ~~~~~~i~~~~~~~--------~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  188 (477)
                      ++.++.+..+...+        .++-+.+.+.-++.|++.|...+. .++.+|+.|+++.+..+|++....-....+||+
T Consensus       355 ~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPl  434 (477)
T PF11700_consen  355 SLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPL  434 (477)
T ss_pred             HHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence            88888666555554        567888999999999999998888 999999999999999999999999999999999


Q ss_pred             HHHHhhhccccCCc
Q 011783          189 LGGFLAQPAEKYPN  202 (477)
Q Consensus       189 ~~~~l~~~~~~~~~  202 (477)
                      +-+.+.+...+-|+
T Consensus       435 l~g~i~~~tg~~r~  448 (477)
T PF11700_consen  435 LFGLITDATGSQRY  448 (477)
T ss_pred             HHHHHHHHhCCchh
Confidence            99999996554444

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.25  E-value=1.6e-09  Score=102.93  Aligned_cols=189  Identities=11%  Similarity=-0.002  Sum_probs=122.8

Q ss_pred             hhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 011783          273 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  352 (477)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  352 (477)
                      |+++...+...+.+.....+....+....     .++|+|..+.+++.++..+...+.++ ..+++.||+|.|+....+.
T Consensus        34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~-----~~~~ls~~q~g~l~ai~~l~~al~ri-p~G~l~Dr~G~R~v~~~~~  107 (462)
T PRK15034         34 RNLWISVSCLLLAFCVWMLFSAVTVNLNK-----IGFNFTTDQLFLLTALPSVSGALLRV-PYSFMVPIFGGRRWTVFST  107 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCChHHHHHHH
Confidence            45555555555544444444443332222     24899999999999999999999988 6699999999999999998


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHH
Q 011783          353 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA  432 (477)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~  432 (477)
                      ++..+..+...+....... ....+++..++.+++ +..++.....+++.+|+++||++.|+....+++|..+++.+.+.
T Consensus       108 ll~~i~~~~~~~a~~~~~~-s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~  185 (462)
T PRK15034        108 AILIIPCVWLGIAVQNPNT-PFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPL  185 (462)
T ss_pred             HHHHHHHHHHHHHHcccCC-CHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            8887777766654211111 122333334444454 55778888889999999999999999977777777776666655


Q ss_pred             HH-----HHhhhhccccC---CCCchHHHHHHHHHHHHHHHHHhh
Q 011783          433 LF-----SWAQKRLDASF---LPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       433 l~-----~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      +.     +..+.......   ..+++.+.++...+.++..++.++
T Consensus       186 ~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~  230 (462)
T PRK15034        186 VIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWS  230 (462)
T ss_pred             HHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44     22211100000   014666777777766666655554

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.24  E-value=9.8e-11  Score=112.02  Aligned_cols=120  Identities=16%  Similarity=0.091  Sum_probs=102.7

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhh
Q 011783           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI  162 (477)
Q Consensus        84 ~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~  162 (477)
                      .|.+.++..+...++.+..|++.||+|||+.+.++.++.++...+...++|.+.+++.+++.|++....... ..+..+.
T Consensus       256 ~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  335 (396)
T TIGR00882       256 FGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQ  335 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            788899999999999999999999999999999999999988888788889999999999999886665544 6677888


Q ss_pred             ccccchhhHHHH-HHHHhHHHHHHHHhHHHHhhhccccCCccccccccc
Q 011783          163 FREEHQALGLST-VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF  210 (477)
Q Consensus       163 ~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~  210 (477)
                      .+++.++...+. .+....+|..++|.++|++.+       .++++..|
T Consensus       336 ~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~-------~~G~~~~f  377 (396)
T TIGR00882       336 FDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYD-------SIGFQGAY  377 (396)
T ss_pred             CCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHH-------hcccHHHH
Confidence            888888877766 678899999999999999998       45665555

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.22  E-value=2e-10  Score=92.23  Aligned_cols=131  Identities=17%  Similarity=0.204  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhh
Q 011783          322 ITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNR  401 (477)
Q Consensus       322 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (477)
                      ...++..++++ ..+++.||++||+.+..+.....++........+      .........+.++..+...+....+..|
T Consensus         6 ~~~~~~~~~~~-~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~   78 (141)
T TIGR00880         6 GYALGQLIYSP-LSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSN------ITVLIIARFLQGFGAAFALVAGAALIAD   78 (141)
T ss_pred             eehhHHHHHHh-hHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            34566677777 8899999999999998888777777665544322      1123334445566667778888889999


Q ss_pred             cCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          402 AVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       402 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      ..|+++|+++.++.+....+|..++|.+.+.+.+..          +|+..+.+.+.+.+++.+...+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~  136 (141)
T TIGR00880        79 IYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL----------GWRAPFLFLAILALAAFILLAF  136 (141)
T ss_pred             HCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc----------chHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999998766          7888888888777777666554

>PRK15075 citrate-proton symporter; Provisional

Probab=99.22  E-value=2.2e-10  Score=110.92  Aligned_cols=140  Identities=18%  Similarity=0.162  Sum_probs=101.1

Q ss_pred             HHhhhchhchHhHHHHHHHH-hcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHH-H
Q 011783           51 LCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNT-L  128 (477)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~-~  128 (477)
                      +........+....|.+.++ +|.+..+      .++....+.++..++.+++|+++||+|||+++..+..+..+... .
T Consensus       248 ~~~~~~~~~~~~~~p~~l~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~  321 (434)
T PRK15075        248 AMTTVSFYLITVYTPTFGKTVLHLSAAD------SLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPA  321 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            33444455566677866554 8999888      88888899999999999999999999999998876554433221 1


Q ss_pred             HH---hhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHH-HhHHHHHHHHhHHHHhhhc
Q 011783          129 FG---LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVST-AWGIGLIIGPALGGFLAQP  196 (477)
Q Consensus       129 ~~---~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~~~  196 (477)
                      ..   ..+++..+....++.|++.+...+. ..++.|.+|+++|+.++++... +..++..++|.+.+++.+.
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~  394 (434)
T PRK15075        322 LSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHV  394 (434)
T ss_pred             HHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHh
Confidence            11   1234444445555666666666665 7889999999999999998544 4445577899999999884

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.22  E-value=2.4e-09  Score=104.94  Aligned_cols=134  Identities=12%  Similarity=0.199  Sum_probs=102.8

Q ss_pred             HHHHHHHhcccccchhhhhhhHHHHH-HHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHH---Hhh-hhHHHH
Q 011783           64 LYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF---GLS-VNFWMA  138 (477)
Q Consensus        64 ~~~~~~~~~~s~~~~~~~~~~g~~~s-~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~---~~~-~~~~~l  138 (477)
                      .|.+.+++|.+.++      .+++.. ...++..++.++.|+++||+|||+.+.++.++.++..+..   +.. ++.+.+
T Consensus       246 ~~~l~~~~G~s~~~------~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l  319 (491)
T PRK11010        246 TTFLIRGVGFDAGE------VGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSM  319 (491)
T ss_pred             HHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence            34556779999999      999874 6668999999999999999999998777666555544322   232 355555


Q ss_pred             HHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCccccccccc
Q 011783          139 VLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF  210 (477)
Q Consensus       139 ~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~  210 (477)
                      .+.-+++.+..|...+. .++..+..+++.+++.+++.+...++|..+++.+.|.+.+       .+||+..|
T Consensus       320 ~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~-------~~G~~~~f  385 (491)
T PRK11010        320 GAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE-------AHGWPTFY  385 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhChHHHH
Confidence            55666666666655555 8888999999999999999999999999999999999998       44565555

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.20  E-value=4.3e-09  Score=98.40  Aligned_cols=146  Identities=12%  Similarity=0.027  Sum_probs=117.3

Q ss_pred             ccccchhh-hHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 011783          308 GLNYSTQM-VGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL  386 (477)
Q Consensus       308 ~~g~~~~~-~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (477)
                      ++|++..+ .|.+......+..+..+ .++++.||+|.|+.+..+.+...+..++.++...      ...+.+.=++.|+
T Consensus        55 elglT~~qv~G~I~s~F~ysYal~qI-p~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S------l~~L~i~R~llGv  127 (511)
T TIGR00806        55 VLNFTEETVTNEIIPVLPYSHLAVLV-PVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS------VWHMQLMEVFYSV  127 (511)
T ss_pred             HcCCCHHHhcchHHHHHHHHHHHHHH-HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence            48999999 99999999999999998 9999999999999999999998888888777543      2245555566678


Q ss_pred             hhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHH
Q 011783          387 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM  466 (477)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  466 (477)
                      +.+... ....++.+.+|+++|+++.|+.+....+|.++++.+++.+ ...+ .      ..|....++......++.++
T Consensus       128 aEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll-~s~g-W------r~y~~Ln~Isl~s~~~a~~~  198 (511)
T TIGR00806       128 TMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL-VTLG-W------ISYSTLNIISLVFMTFSVFL  198 (511)
T ss_pred             HHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC-c------hhHHHHHHHHHHHHHHHHHH
Confidence            888888 8899999999999999999999999999999999999994 3331 1      13444555555555556555


Q ss_pred             Hhh
Q 011783          467 TFK  469 (477)
Q Consensus       467 ~~~  469 (477)
                      .++
T Consensus       199 a~~  201 (511)
T TIGR00806       199 ALF  201 (511)
T ss_pred             HHh
Confidence            555

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=99.20  E-value=2.8e-07  Score=87.89  Aligned_cols=369  Identities=10%  Similarity=0.083  Sum_probs=195.7

Q ss_pred             hhHHHHHHHHHHHhhhchhchHhHHHHHHHHhccc-----ccchhhhhhhHHHHHHHHHHHHHH-hhhhhhhhhhcCCch
Q 011783           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIA-----KREEDIGSYAGYVGSSFMFGRALT-SVFWGLVADRYGRKP  113 (477)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-----~~~~~~~~~~g~~~s~~~~~~~~~-~~~~G~l~Dr~Grr~  113 (477)
                      ++.+....+..|+..+.++..    -++.+.+..+     .+.      +.++-+...+..++. .++.+++++|++|++
T Consensus         6 ~~k~~~~~l~fF~il~~Y~iL----R~lKD~lvv~~~~~gae~------i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~   75 (472)
T TIGR00769         6 LKKFLPLFLMFFCILFNYTIL----RDTKDTLVVTAKGSGAEI------IPFLKTWVVVPMAVIFMLIYTKLSNILSKEA   75 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HhhhhheeecccCCchhh------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            355555666666655555444    4455566553     344      888888888877777 899999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHhh----h---------------------------hHHHHHHHHHHhhhcccchhh-H-HHHhh
Q 011783          114 VIIMGTASVVIFNTLFGLS----V---------------------------NFWMAVLTRFLLGSLNGLLGP-I-KAYAC  160 (477)
Q Consensus       114 ~~~~~~~~~~i~~~~~~~~----~---------------------------~~~~l~~~r~l~G~~~g~~~~-~-~~~i~  160 (477)
                      ++-+....+....+++++.    +                           +.|...+......+-+..... . ..+..
T Consensus        76 lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fan  155 (472)
T TIGR00769        76 LFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFAN  155 (472)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988887777777666654    1                           123333444445554444333 5 88999


Q ss_pred             hhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCccc-cc----ccccccccchHHHHHHHHHhhccccccCC
Q 011783          161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF-SS----ESLFGKFPYFLPCLCISLFAFGETLHRHN  235 (477)
Q Consensus       161 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  235 (477)
                      |.++.+|-.|.+++++.+.++|.++++.+..++.+....+.... .|    +..+........+.+.+...+ +...  .
T Consensus       156 di~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l-~~~~--~  232 (472)
T TIGR00769       156 QITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWV-NRNV--L  232 (472)
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc--c
Confidence            99999999999999999999999999999888874211111011 11    011100000001111111111 1111  1


Q ss_pred             CCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhh
Q 011783          236 DDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQM  315 (477)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  315 (477)
                      .+++..+   ++   ..++.++.+.+..++.+.++|+|.++...+...++...........-......     + -++.+
T Consensus       233 ~~~~~~~---~~---~~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~-----~-p~~~~  300 (472)
T TIGR00769       233 TDPRSYN---PA---LKEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQ-----Y-PSPNE  300 (472)
T ss_pred             CCccccc---hh---hccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----C-CCHHH
Confidence            1100000   00   00011111223345677889999888877766666544333332222222211     1 12222


Q ss_pred             ----hHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH---HHHHHHHHHHhhhh-------hH-HHHHHHH
Q 011783          316 ----VGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIP---LLTSYPYIAMLSGF-------GL-AFLLNCA  380 (477)
Q Consensus       316 ----~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-------~~-~~~~~~~  380 (477)
                          .|.+....++..++.++ +.+++.+|+|-+......-++..+   +++.+.........       .. .....+.
T Consensus       301 ~~~f~g~~~~~~gi~tl~~~l-~~~~l~~~~Gw~~~a~i~Pii~lit~~~Ff~~~~f~~~~~~~~~~l~~~pl~l~v~~g  379 (472)
T TIGR00769       301 YSAFMGDFSTWTGVVSVTMML-LSGNVIRKYGWLTAALITPLVMLLTGVAFFSLIFFGGPAAPLVAKLGMTPLLLAVYVG  379 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhccChHHHHHHHH
Confidence                34455555666666777 558999999877666555444443   22222111110000       00 1111111


Q ss_pred             ---HHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHH-HHHHHHhhhHHHHHH
Q 011783          381 ---SVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGM-SLFKAAGPAGGGALF  434 (477)
Q Consensus       381 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~g~~~~~~~~g~l~  434 (477)
                         ..+.-..--..+-+.--++---.|+|.|.++=+....+. .+|-..|..+...+.
T Consensus       380 ~~~~v~~k~~kYsl~dp~kEmly~pld~e~K~K~Ka~iD~v~~r~Gks~gs~i~~~l~  437 (472)
T TIGR00769       380 AIQNILSKSTKYSLFDATKEMAYIPLDEEQKVKGKAAIDVVAARLGKSGGALIQQGLL  437 (472)
T ss_pred             HHHHHHHHHhhhccccHHHHHhcccCCHHHHHHhHhhhhhhhhhhhhHHHHHHHHHHH
Confidence               011111111222222222333457889999888887754 677777777655543

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.19  E-value=2.8e-10  Score=108.65  Aligned_cols=141  Identities=14%  Similarity=0.122  Sum_probs=104.2

Q ss_pred             HHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHH-HHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHH
Q 011783           49 IVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFM-FGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNT  127 (477)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~-~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~  127 (477)
                      ..++............+.+.+|.|.++++      +|++..... ....++.++.|++.||+|+|+.+..+.++.++..+
T Consensus       216 ~~~l~~~~~~~~~~~~~~~l~~~G~s~~~------ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~  289 (390)
T TIGR02718       216 LALLSAMTAVSGFGLSKLYLVDAGWPLEW------IGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLAL  289 (390)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHhcCCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            33444444444455667777789999999      999988876 46677889999999999999999887766533333


Q ss_pred             HHHh------hhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccc-cchhhHHHHHHHHhHHHHHHHHhHHHHhhh
Q 011783          128 LFGL------SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE-EHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (477)
Q Consensus       128 ~~~~------~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (477)
                      ....      .++...+.....+.++..+...+. .+.+.+..++ +++++.+++.+...++|..+||.++|.+.+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~  365 (390)
T TIGR02718       290 LWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD  365 (390)
T ss_pred             HHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2221      123334445555666667776666 7777777766 889999999999999999999999999998

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.19  E-value=1.2e-10  Score=113.20  Aligned_cols=150  Identities=14%  Similarity=0.156  Sum_probs=114.1

Q ss_pred             hHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHH
Q 011783           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (477)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~  120 (477)
                      +.+..+.+..++..+.........+.+.++...+..+      .+++.+...++..++.+++|+++||+|||+++..+.+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~  295 (437)
T TIGR00792       222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLGDPEL------FSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGIL  295 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhheeEeeecCChHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            3444444455555554444444444444332223444      6788888899999999999999999999999999998


Q ss_pred             HHHHHHHHHHhh-hhHHHHHHHHHHhhhcccchhhH-HHHhhhhcc-------ccchhhHHHHHHHHhHHHHHHHHhHHH
Q 011783          121 SVVIFNTLFGLS-VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-------EEHQALGLSTVSTAWGIGLIIGPALGG  191 (477)
Q Consensus       121 ~~~i~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~  191 (477)
                      +.+++.+...+. ++.+.+++..++.|++.+...+. .++++|..|       ++++|...++.+....+|..+++.+.|
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g  375 (437)
T TIGR00792       296 LMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVG  375 (437)
T ss_pred             HHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888887776665 46677778888899998887777 889888875       456799999999999999999999999


Q ss_pred             Hhhhc
Q 011783          192 FLAQP  196 (477)
Q Consensus       192 ~l~~~  196 (477)
                      .+.+.
T Consensus       376 ~ll~~  380 (437)
T TIGR00792       376 LILGI  380 (437)
T ss_pred             HHHHH
Confidence            99873

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.18  E-value=1.1e-09  Score=107.13  Aligned_cols=147  Identities=18%  Similarity=0.170  Sum_probs=119.8

Q ss_pred             ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 011783          308 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLL  387 (477)
Q Consensus       308 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (477)
                      +++++..+.|.+.+...++..++++ ..+++.||+|+|+.+..+.++..++.++..+....    ....+++.-++.+++
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~-~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~----~~~~l~~~r~~~G~~  144 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQI-PVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGG----GIALVVFCRVIQGLA  144 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHc-chHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHc----CchHHHHHHHHHHHh
Confidence            5789999999999999999999998 88999999999999998888777766554433211    122345555666788


Q ss_pred             hHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHH-hhhhccccCCCCchHHHHHHHHHHHHHHHH
Q 011783          388 SVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSW-AQKRLDASFLPGSQMVFFVLNVVEAIGVLM  466 (477)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  466 (477)
                      .+...+....++.+.+|+++|++++|+.+....+|..++|.+.+.+.+. .          ||+..|++.+++.++..++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~----------gw~~~f~i~~~~~~~~~~~  214 (465)
T TIGR00894       145 QGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWG----------GWPMIFYVFGIVGCAWSLL  214 (465)
T ss_pred             cccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----------CCCeehhhhhHHHHHHHHH
Confidence            8888999999999999999999999999999999999999999998875 3          7889999888777666554


Q ss_pred             Hhh
Q 011783          467 TFK  469 (477)
Q Consensus       467 ~~~  469 (477)
                      .+.
T Consensus       215 ~~~  217 (465)
T TIGR00894       215 WFV  217 (465)
T ss_pred             HHH
Confidence            433

>PRK10133 L-fucose transporter; Provisional

Probab=99.18  E-value=5.6e-09  Score=100.84  Aligned_cols=150  Identities=9%  Similarity=-0.062  Sum_probs=112.4

Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 011783          275 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  354 (477)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  354 (477)
                      +....+.++.+.+.........|.+-      +++|.++.+.|+..+...++..++++ ..+++.||+|||+.+..+..+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~p~i~------~~~~~s~~~~gl~~~~~~~g~~i~~~-~~g~l~dr~G~r~~l~~g~~~  100 (438)
T PRK10133         28 FALLCSLFFLWAVANNLNDILLPQFQ------QAFTLTNFQAGLIQSAFYFGYFIIPI-PAGILMKKLSYKAGIITGLFL  100 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH------HHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCcHHHHHHHHHH
Confidence            34445555555555555555566542      34899999999999999999999998 899999999999999999998


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHH
Q 011783          355 TIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALF  434 (477)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  434 (477)
                      ..++.++.......+   .+..+.+.-++.+.+.+...+....++.+..|+++++..+++.+....+|..++|.+++.+.
T Consensus       101 ~~~~~~l~~~~~~a~---~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        101 YALGAALFWPAAEIM---NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888876643222111   12244445555667777888888888888777676667899999999999999999987765

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.17  E-value=1.9e-09  Score=106.12  Aligned_cols=157  Identities=8%  Similarity=-0.053  Sum_probs=116.3

Q ss_pred             ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH------hhhhhHHHHHHHHH
Q 011783          308 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAM------LSGFGLAFLLNCAS  381 (477)
Q Consensus       308 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  381 (477)
                      +++.+..+.++..+...++..++++ +.+++.||+|||+.+..+..+..++.+...+...      ......+..+++.-
T Consensus        49 ~~~~~~~~~~~~~s~~~ig~~~~~~-~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R  127 (479)
T PRK10077         49 SESAANSLLGFCVASALIGCIIGGA-LGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYR  127 (479)
T ss_pred             cccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHH
Confidence            3588899999999999999999999 9999999999999999998887766555443210      01112233445555


Q ss_pred             HHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHH
Q 011783          382 VVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEA  461 (477)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~  461 (477)
                      ++.|++.+...+...+++.|.+|+++||+++++.+....+|..+++.+.+.+.......... . .||++.|++.++..+
T Consensus       128 ~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~-~gWr~~f~~~~~~~~  205 (479)
T PRK10077        128 IIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLN-T-DGWRYMFASEAIPAL  205 (479)
T ss_pred             HHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccc-c-CChHHHHHHHHHHHH
Confidence            66788889999999999999999999999999999999999988877666554321100000 0 189999998877766


Q ss_pred             HHHHHH
Q 011783          462 IGVLMT  467 (477)
Q Consensus       462 ~~~~~~  467 (477)
                      +..+..
T Consensus       206 ~~~~~~  211 (479)
T PRK10077        206 LFLMLL  211 (479)
T ss_pred             HHHHHH
Confidence            655443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.16  E-value=1e-09  Score=103.78  Aligned_cols=147  Identities=17%  Similarity=0.236  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHhh-hchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHH
Q 011783           43 LFSIWIIVLCTA-LPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (477)
Q Consensus        43 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~  121 (477)
                      +.+.....+... -+...+......+.++-|++.++      .-+..........+..+.+..+.||+|||+.++.+..+
T Consensus       271 ~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~------a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~  344 (485)
T KOG0569|consen  271 LLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEE------AQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSL  344 (485)
T ss_pred             HHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            333433444433 44556666667899999999998      88999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh---hHH------HHHHHHHHhhhcccc-hhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHH
Q 011783          122 VVIFNTLFGLSV---NFW------MAVLTRFLLGSLNGL-LGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (477)
Q Consensus       122 ~~i~~~~~~~~~---~~~------~l~~~r~l~G~~~g~-~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  190 (477)
                      +.+..+++....   +..      ..+++.++..++-+. ..|. .-+.+|++|++.|..++++.....-+...+-...-
T Consensus       345 ~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~f  424 (485)
T KOG0569|consen  345 MAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAF  424 (485)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            998888776542   211      123444555554333 5666 88899999999999999999888888877766666


Q ss_pred             HHhhh
Q 011783          191 GFLAQ  195 (477)
Q Consensus       191 ~~l~~  195 (477)
                      ..+.+
T Consensus       425 p~l~~  429 (485)
T KOG0569|consen  425 PPLQN  429 (485)
T ss_pred             HHHHH
Confidence            66655

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.16  E-value=4.8e-10  Score=108.57  Aligned_cols=161  Identities=16%  Similarity=0.256  Sum_probs=143.6

Q ss_pred             hHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcC--CchhhHHH
Q 011783           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG--RKPVIIMG  118 (477)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~G--rr~~~~~~  118 (477)
                      +.++.+.+...+..++.......+|.+.++.+.+..+      .+.+.++..+...++.+..|+++|+..  ++.+..++
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~------aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~  371 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSND------AAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLT  371 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhh------hHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHH
Confidence            3456677777888888888888999999999999999      999999999999999999999999988  56678888


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhcc
Q 011783          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (477)
Q Consensus       119 ~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  197 (477)
                      +++.+++...+.++++++.+...-.+.|+..|.+... ..++.|..+.++-..+.|+.....+++.++||+++|.+.+..
T Consensus       372 ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t  451 (509)
T KOG2504|consen  372 LLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT  451 (509)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc
Confidence            8899999999999999999999999999999998888 678999999999999999999999999999999999998876


Q ss_pred             ccCCcccccc
Q 011783          198 EKYPNLFSSE  207 (477)
Q Consensus       198 ~~~~~~~~~~  207 (477)
                      .+|...|...
T Consensus       452 g~Y~~~f~~~  461 (509)
T KOG2504|consen  452 GNYDHAFYFC  461 (509)
T ss_pred             CCeeeehhhc
Confidence            6666555543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.15  E-value=5.5e-09  Score=103.10  Aligned_cols=164  Identities=12%  Similarity=-0.019  Sum_probs=118.0

Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh
Q 011783          309 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS  388 (477)
Q Consensus       309 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (477)
                      .+.+..+.+.+.+...++.+++.+ +.+++.||+|||+.+..+.++..++..+...............+.+.-++.+++.
T Consensus        51 ~~~~~~~~~~~~~~~~ig~~ig~~-~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  129 (502)
T TIGR00887        51 GPLPSSVSAAVNGSASIGTLAGQL-FFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGI  129 (502)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHH
Confidence            345666778899999999999998 9999999999999999888887777665554332111111234555556667888


Q ss_pred             HHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhc---c----------ccCCCCchHHHHH
Q 011783          389 VSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRL---D----------ASFLPGSQMVFFV  455 (477)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~---~----------~~~~~g~~~~~~~  455 (477)
                      +...+....+..|.+|++.||++.++.+....+|..+++.+...+........   +          .....+|+..+.+
T Consensus       130 g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~  209 (502)
T TIGR00887       130 GGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGF  209 (502)
T ss_pred             hhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHH
Confidence            88889999999999999999999999999999999999999887765332100   0          0000179999977


Q ss_pred             HHHHHHHHHHHHhhhhhhcc
Q 011783          456 LNVVEAIGVLMTFKPFLAQR  475 (477)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~  475 (477)
                      .++..++..+...  ++||+
T Consensus       210 ~~ip~~i~~~~~~--~lpES  227 (502)
T TIGR00887       210 GAVPALLALYFRL--TIPET  227 (502)
T ss_pred             HHHHHHHHHHHHH--hCCCC
Confidence            7666655544433  35553

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.15  E-value=8.5e-10  Score=104.14  Aligned_cols=163  Identities=17%  Similarity=0.264  Sum_probs=131.6

Q ss_pred             hHHHHHHHHHHHhhhchhchHhHHHHHHHHhc-ccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHH
Q 011783           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQ-IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (477)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~  119 (477)
                      +++....+..++.......+....+.+.+|.| .+.+.      .+.+.++..++=.+.-...+++..|+|.|+++.++.
T Consensus       207 ~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~------~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~  280 (400)
T PF03825_consen  207 PRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGST------IGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLAL  280 (400)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            44556666777778888888888888889988 56666      788888888888888899999999999999999999


Q ss_pred             HHHHHHHHHHHhh-hhHHHHHHH----HHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHH-HhHHHHHHHHhHHHH
Q 011783          120 ASVVIFNTLFGLS-VNFWMAVLT----RFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVST-AWGIGLIIGPALGGF  192 (477)
Q Consensus       120 ~~~~i~~~~~~~~-~~~~~l~~~----r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~~~~~  192 (477)
                      +.+++=..+++.. ++.+...+.    ..++|+.-+...++ ..++.+.+|++.|+++.++++. ..++|..+|..++|+
T Consensus       281 ~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~  360 (400)
T PF03825_consen  281 VAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGW  360 (400)
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            9999998888887 554443333    45699998888877 9999999999999999998876 478999999999999


Q ss_pred             hhhccccCCccccccccc
Q 011783          193 LAQPAEKYPNLFSSESLF  210 (477)
Q Consensus       193 l~~~~~~~~~~~~~~~~~  210 (477)
                      +.+. .+-+..+.|...|
T Consensus       361 l~~~-~g~~~~~~~~~~~  377 (400)
T PF03825_consen  361 LYDA-FGARGMFDWSAVF  377 (400)
T ss_pred             HHHH-hcchhhhhHHHHH
Confidence            9984 2344455555554

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.15  E-value=1.1e-07  Score=89.36  Aligned_cols=332  Identities=13%  Similarity=0.023  Sum_probs=199.1

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhcccc
Q 011783           88 GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE  166 (477)
Q Consensus        88 ~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~  166 (477)
                      .++-.....+.+++.+.+.|+.|.|+.+.++...+....+.+-+.+ -+-++..-.+.|+|.+..+.. ..+++|..++|
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N-~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN-SYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc-hHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            6777778889999999999999999999999999998888876654 566788889999999999998 99999999999


Q ss_pred             chhhHHHHHHHHhHHHHHHHHhHHHHhhhccccC-Cccccc-ccc----cccc-cchHHHHHHHHHhhc-cccccCCCCC
Q 011783          167 HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY-PNLFSS-ESL----FGKF-PYFLPCLCISLFAFG-ETLHRHNDDD  238 (477)
Q Consensus       167 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~-~~~~~~-~~~----~~~~-~~~~~~~~~~~~~l~-~~~~~~~~~~  238 (477)
                      .+.+..++.......+.++|..+-..+..+...- ....+- +..    +... ...+..++.....+. ......+.++
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~  214 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD  214 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc
Confidence            9999999988888888888876665554322210 000000 000    0000 000011111110010 1111111111


Q ss_pred             CccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccch-hhhH
Q 011783          239 DSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYST-QMVG  317 (477)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~g  317 (477)
                      ...+.. .. +       +...+..+..-+++++++...+...++...+...-+...+|..+...   ...+.+. ...+
T Consensus       215 ~~~~~~-~~-~-------~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft---~~~~~n~~~~~a  282 (461)
T KOG3098|consen  215 VVNCKS-SS-E-------TSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFT---RKLGSNTTYLIA  282 (461)
T ss_pred             hhhhhh-hc-c-------ccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhh---hhccCcchhHHH
Confidence            000000 00 0       00111122344566778777766666555444444444444433221   1122222 2345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh---hcchhHHHHHHHHHHHHHHHHHHHHHhhhh------------hHHHHHHHHHH
Q 011783          318 EVLAITGFSLLVFQLSLYPFLERI---LGPIMVARIAGVLTIPLLTSYPYIAMLSGF------------GLAFLLNCASV  382 (477)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~  382 (477)
                      +.....+++.++++. ..+.+.||   +|+++.+..+..+-.+.+++.-.....+.+            .......++.+
T Consensus       283 i~~~~~g~g~v~~g~-~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~  361 (461)
T KOG3098|consen  283 IYSIGIGLGEVIGGL-DFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGF  361 (461)
T ss_pred             HHHHHHhHHHHHHHH-HHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHH
Confidence            555566677777666 55666554   567787777777666665544333221110            01335566667


Q ss_pred             HHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHH
Q 011783          383 VKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALF  434 (477)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  434 (477)
                      +.|+.-.......+.++.... +++|.++.++.-.-..++..++-+......
T Consensus       362 l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~~  412 (461)
T KOG3098|consen  362 LLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYLL  412 (461)
T ss_pred             HHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence            778888888889999999988 477999998888877777777666544443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.13  E-value=3.8e-09  Score=114.97  Aligned_cols=187  Identities=16%  Similarity=0.090  Sum_probs=120.9

Q ss_pred             hhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCcccc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 011783          267 KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNY-STQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  345 (477)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  345 (477)
                      +.+++++.+..+....++..+........++.+.... .....+. +....++..+...+...+.++ +.|++.||++||
T Consensus         5 ~~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~-~~G~laDr~~rk   82 (1140)
T PRK06814          5 LYLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYG-LSGALGAYNNALVTLAGAVFILPFFIFSA-LAGQLADKYDKA   82 (1140)
T ss_pred             hhhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHH-hccccccchHHHHHHHHHHHHHHHHHHhh-hHHhhhhhccHH
Confidence            3467777777766666665544332222212111111 1111222 234467777788888888888 899999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHH
Q 011783          346 MVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAA  425 (477)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~  425 (477)
                      +++.....+..+............   ....+++..++.+++.+...|...+++.+.+|++++++++|+.++...+|..+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~---s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~i  159 (1140)
T PRK06814         83 KLAKILKFAEIGIAALAIYGFHLN---SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILL  159 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHH
Confidence            976443222222221111111111   12244555666678888889999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHh
Q 011783          426 GPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF  468 (477)
Q Consensus       426 ~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  468 (477)
                      ||.++|.+.+..          +|+..|+..+++.+++.++..
T Consensus       160 gp~l~g~l~~~~----------~~~~~~~~~~~~~~~~~~~~~  192 (1140)
T PRK06814        160 GTIIGGLATISG----------NFVILVALLMGIAVLGWLASL  192 (1140)
T ss_pred             HHHHHHHHHhcc----------ccHHHHHHHHHHHHHHHHHHh
Confidence            999999999877          788888555555554444433

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.13  E-value=6.9e-09  Score=96.71  Aligned_cols=178  Identities=13%  Similarity=0.139  Sum_probs=125.6

Q ss_pred             hhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH
Q 011783          268 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV  347 (477)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  347 (477)
                      +++.++.....++...+.........+++-.+++      +.+-.+..-|......-.+.++.-+ +.+++.+|+|+.++
T Consensus       366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHle------d~~~~~~LfGv~~a~~~~gEI~~~f-fs~klI~kiGHv~v  438 (618)
T KOG3762|consen  366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLE------DLGGIKTLFGVVSALCHAGEILFYF-FSFKLIEKIGHVNV  438 (618)
T ss_pred             HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHh------hcCCcceeeeehhhhhccchHHHHH-HHHHHHHHhcccce
Confidence            4566666555444444444333333333322333      2565666667666666666666655 88899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHH-HHHHHHh
Q 011783          348 ARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGM-SLFKAAG  426 (477)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~g~~~~  426 (477)
                      +.+++.+..+=++.+.+..+.+      ..+..-++.+...+..+....+|++...||+.+.++.++..... .+|-.+|
T Consensus       439 ~~lgLa~~~~Rf~~~S~L~n~W------~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~G  512 (618)
T KOG3762|consen  439 MYLGLACNVGRFLYYSYLQNPW------MVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLG  512 (618)
T ss_pred             eeehhhHHHHHHHHHHHhcCch------heeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchh
Confidence            9999888877777666655422      33444455667778889999999999999999999999998855 8899999


Q ss_pred             hhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHh
Q 011783          427 PAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF  468 (477)
Q Consensus       427 ~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  468 (477)
                      .+++|.+.+.+          |-+..|..+++.+++.++...
T Consensus       513 slIGG~~v~~f----------g~~ttf~~~giAcl~~l~~~~  544 (618)
T KOG3762|consen  513 SLIGGFVVERF----------GARTTFRIFGIACLVTLALFI  544 (618)
T ss_pred             hhhhhhhheee----------hhHHHHHHHHHHHHHHHHHHH
Confidence            99999999988          666788777776666655443

>TIGR00901 2A0125 AmpG-related permease

Probab=99.13  E-value=7.1e-10  Score=104.53  Aligned_cols=132  Identities=15%  Similarity=0.128  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHH-HHHHHHhhhhhhhhhhcCCchhhHHHHHH
Q 011783           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFM-FGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (477)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~-~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~  121 (477)
                      ++.+.+..++............|.+.+++|.+.++      .+.+.++.. ++..++.+++|++.||+|||+.+..+.++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~------~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~  284 (356)
T TIGR00901       211 ALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEE------IALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIV  284 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            44444445555555566667778777779999988      898887765 67789999999999999999999988888


Q ss_pred             HHHHHHHHHhh-----------hhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhH
Q 011783          122 VVIFNTLFGLS-----------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWG  180 (477)
Q Consensus       122 ~~i~~~~~~~~-----------~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~  180 (477)
                      .++...+..+.           ++.+.+....++.+++.+...+. .+++.|.+|+++|++.+++.+...+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       285 QALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            87776655543           45677888889999999988887 9999999999999999999887654

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.12  E-value=6.5e-11  Score=108.23  Aligned_cols=150  Identities=14%  Similarity=0.067  Sum_probs=129.5

Q ss_pred             ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 011783          308 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLL  387 (477)
Q Consensus       308 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (477)
                      .+|.++...|++.....+...+.++ +.+++.||++|++++..|..+-.++.+.-.+..      ++..+.++=.+.|++
T Consensus        62 ~fni~~s~~Gll~~vf~v~~~i~sP-l~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~------~Fwq~~l~R~~vGiG  134 (493)
T KOG1330|consen   62 YFNISDSELGLLQTVFIVVFMIASP-LFGYLADRYNRKRVIAVGIFIWTLAVFASGFSN------HFWQVLLCRGFVGIG  134 (493)
T ss_pred             hcCCCchhccchhHHHHHHHHHHHH-HHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHH------HHHHHHHHHHHhccc
Confidence            3899999999999999999999999 999999999999999999988888877766653      344556666677889


Q ss_pred             hHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCC-chHHHHHHHHHHHHHHHH
Q 011783          388 SVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPG-SQMVFFVLNVVEAIGVLM  466 (477)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~  466 (477)
                      .....|..++++++.+|.++|++++++.+.....|..+|-.+++.+.++.          + |++.|...+++.++..++
T Consensus       135 eAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~----------~~Wr~af~~~avl~vi~~~L  204 (493)
T KOG1330|consen  135 EASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT----------FWWRWAFRGSAVLGVIVGLL  204 (493)
T ss_pred             hhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc----------cceEEEEEeehHHHHHHHHH
Confidence            99999999999999999999999999999999999999999888888776          4 999999999998888777


Q ss_pred             Hhhhhhhcc
Q 011783          467 TFKPFLAQR  475 (477)
Q Consensus       467 ~~~~~~~~~  475 (477)
                      ... +.+|+
T Consensus       205 ~~~-f~~eP  212 (493)
T KOG1330|consen  205 VFL-FVREP  212 (493)
T ss_pred             HHh-hccCc
Confidence            665 45544

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=7.4e-10  Score=99.26  Aligned_cols=146  Identities=20%  Similarity=0.235  Sum_probs=128.1

Q ss_pred             CccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 011783          307 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL  386 (477)
Q Consensus       307 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (477)
                      ...+-+..++|++++...+..++.+. +.|.+.||+|+|..+..|+.++...-+++++....+      .+++.=.+.++
T Consensus        99 ~~~~~e~~~iG~LFaskA~~qllvnp-~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~------~l~vAR~LQgv  171 (464)
T KOG3764|consen   99 ISLDRENTQIGLLFASKALVQLLVNP-FFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYP------MLFVARSLQGV  171 (464)
T ss_pred             cCccccccchhHHHHHHHHHHHHhcc-cchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhH------HHHHHHHHhhh
Confidence            34666788899999999999999999 888999999999999999999999988888876533      45555566778


Q ss_pred             hhHHHHhHHHHHHhhcCCcch-hhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHH
Q 011783          387 LSVSIITGLFILQNRAVDQDQ-RGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVL  465 (477)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  465 (477)
                      +.........+++++.+|+|. |++++|+.-.+..+|-.+||.++|.+++..          |++.+|+++++++++...
T Consensus       172 gsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~----------Gk~aPFlVL~~v~Lld~~  241 (464)
T KOG3764|consen  172 GSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA----------GKSAPFLVLAIVLLLDGA  241 (464)
T ss_pred             hHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc----------CCcCcHHHHHHHHHHHHH
Confidence            888889999999999999775 699999999999999999999999999998          999999999999999888


Q ss_pred             HHhh
Q 011783          466 MTFK  469 (477)
Q Consensus       466 ~~~~  469 (477)
                      +-++
T Consensus       242 L~l~  245 (464)
T KOG3764|consen  242 LQLL  245 (464)
T ss_pred             HHHh
Confidence            7766

>TIGR01272 gluP glucose/galactose transporter

Probab=99.12  E-value=2.2e-09  Score=98.30  Aligned_cols=146  Identities=16%  Similarity=0.117  Sum_probs=110.2

Q ss_pred             hHHHHHHHHHHHhhhchhchHhHHHHHHHH---hcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHH
Q 011783           41 TELFSIWIIVLCTALPISSLFPFLYFMIKD---FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (477)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~  117 (477)
                      +.+....++.++.......+....+.+.+|   +|.++++      .++..+.+..+..++.+..+++.||+|+|+.+.+
T Consensus       140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~------a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~  213 (310)
T TIGR01272       140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQ------AAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAF  213 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            344444455555444555666666755543   6888888      9999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhh
Q 011783          118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (477)
Q Consensus       118 ~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (477)
                      +.++..++.++....++... ...-++.|++.+...|. .+...+..|++ .+++.++. ....+|..++|++.|.+.+
T Consensus       214 ~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad  289 (310)
T TIGR01272       214 NAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLAD  289 (310)
T ss_pred             HHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHH
Confidence            88888887766655554332 23555788998888888 88888887753 45666665 5667899999999999988

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.11  E-value=3.2e-09  Score=96.46  Aligned_cols=147  Identities=17%  Similarity=0.082  Sum_probs=117.7

Q ss_pred             CccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 011783          307 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL  386 (477)
Q Consensus       307 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (477)
                      +++++|+.|.+++.++..+.+.+.++ ..+.+.||+|.|+....+.++..+-++.+.+....++.  +..+. +.++.+ 
T Consensus        42 ~~~~LS~~q~~ll~aiPil~GallRl-~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~--~~ll~-~gll~G-  116 (417)
T COG2223          42 SDFGLSEGQKGLLVAIPILVGALLRL-PYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPST--WQLLV-IGLLLG-  116 (417)
T ss_pred             cccCCCHHHHHHHHHHHHHHhHHHHH-HHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCch--HHHHH-HHHHHh-
Confidence            55999999999999999999999999 88999999999999999999988888877777664433  22332 223323 


Q ss_pred             hhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCC---chHHHHHHHHHHHHH
Q 011783          387 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPG---SQMVFFVLNVVEAIG  463 (477)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~  463 (477)
                      ..++.+......+++.+|+|++|.++|+.. .+++|..+...++..+....          |   |+.+..+.....++.
T Consensus       117 ~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~----------g~~~w~~~~~i~~~~l~v~  185 (417)
T COG2223         117 LAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF----------GFLAWRNVAGIYVVALAIA  185 (417)
T ss_pred             cccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHHH
Confidence            335566677778899999999999999988 99999999999999998887          6   777777777777776


Q ss_pred             HHHHhh
Q 011783          464 VLMTFK  469 (477)
Q Consensus       464 ~~~~~~  469 (477)
                      .+..++
T Consensus       186 ~v~~~~  191 (417)
T COG2223         186 AVLAWL  191 (417)
T ss_pred             HHHHHH
Confidence            665554

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.11  E-value=1e-08  Score=99.29  Aligned_cols=145  Identities=10%  Similarity=-0.087  Sum_probs=101.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHhhhhHHHHh
Q 011783          316 VGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSG--FGLAFLLNCASVVKNLLSVSIIT  393 (477)
Q Consensus       316 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  393 (477)
                      .+..+....++..++++ +.|++.||+|||+.+..+..+..++.+...+.+....  ......+.+.=++.|++.++..+
T Consensus        65 ~~~~~~~~~~~~~ig~~-~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~  143 (432)
T PRK10406         65 TAGVFAAGFLMRPIGGW-LFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYG  143 (432)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHh
Confidence            34444555555668887 8999999999999999999988888777665443211  11122344455566778888899


Q ss_pred             HHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhc-cccCCCCchHHHHHHHHHHHHHH
Q 011783          394 GLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRL-DASFLPGSQMVFFVLNVVEAIGV  464 (477)
Q Consensus       394 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~  464 (477)
                      ...+++.|..|+++||++.++.......|..+++.+...+.....+.. ..   .||+..|++.++..++..
T Consensus       144 ~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~---~gWr~~F~i~~~~~ll~~  212 (432)
T PRK10406        144 TSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELRE---WGWRIPFALGAVLAVVAL  212 (432)
T ss_pred             hHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhc---cchHHHHHHHHHHHHHHH
Confidence            999999999999999999998887777888877776555443221100 00   189999998777666543

>TIGR00898 2A0119 cation transport protein

Probab=99.10  E-value=5e-10  Score=110.89  Aligned_cols=107  Identities=18%  Similarity=0.062  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHhhhcccchhhH-HHHhhhhcc
Q 011783           88 GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF--WMAVLTRFLLGSLNGLLGPI-KAYACEIFR  164 (477)
Q Consensus        88 ~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~  164 (477)
                      .....+....+.++.+++.||+|||+.+.++.++.+++.++..+.++.  +...+.-++.+++.+...+. ..+.+|.+|
T Consensus       361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  440 (505)
T TIGR00898       361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP  440 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            344556677888999999999999999999999988888877776543  44455556666666665566 899999999


Q ss_pred             ccchhhHHHHHHHHhHHHHHHHHhHHHHhhh
Q 011783          165 EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (477)
Q Consensus       165 ~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (477)
                      ++.|++++|+.+....+|.+++|.+.+ +.+
T Consensus       441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~  470 (505)
T TIGR00898       441 TVVRNLGVGVCSTMARVGSIISPFLVY-LGE  470 (505)
T ss_pred             HHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH
Confidence            999999999999999999999999988 443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.10  E-value=1.5e-09  Score=104.92  Aligned_cols=150  Identities=18%  Similarity=0.204  Sum_probs=127.5

Q ss_pred             hhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHH
Q 011783           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (477)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~  119 (477)
                      .|.+..+....++..+.........+++.++.--+++.      .+.+..+..++..++.+++++++||+|+|+.+..+.
T Consensus       224 nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~------~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~  297 (428)
T PF13347_consen  224 NRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGL------ISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGL  297 (428)
T ss_pred             cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchh------hHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhH
Confidence            34566677777888888888887888777664434455      788889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhh--hHHHHHHHHHHhhhcccchhhH-HHHhhhhccc-------cchhhHHHHHHHHhHHHHHHHHhH
Q 011783          120 ASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE-------EHQALGLSTVSTAWGIGLIIGPAL  189 (477)
Q Consensus       120 ~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~  189 (477)
                      ++.+++.++..+.+  |.+.+++.-++.|++.+...+. .++++|..+.       ++.|..++..+....+|..+++.+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i  377 (428)
T PF13347_consen  298 LLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAI  377 (428)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHH
Confidence            99999999988886  9999999999999999988887 9999998873       345888889999999999999998


Q ss_pred             HHHhhh
Q 011783          190 GGFLAQ  195 (477)
Q Consensus       190 ~~~l~~  195 (477)
                      .+.+.+
T Consensus       378 ~g~~l~  383 (428)
T PF13347_consen  378 VGLLLA  383 (428)
T ss_pred             HHHHHH
Confidence            888776

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.10  E-value=1.2e-08  Score=97.87  Aligned_cols=165  Identities=16%  Similarity=0.119  Sum_probs=118.3

Q ss_pred             HHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-----cchh-HHHHHHHH
Q 011783          281 VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-----GPIM-VARIAGVL  354 (477)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~-~~~~~~~~  354 (477)
                      .++.............|.|+.+      .|+|.+++|++......  .+..+ +.+++.||+     |||+ .+..+..+
T Consensus         7 l~~~~~~~~~~~~~~~~~~l~~------~g~~~~~ig~~~~~~~~--~~~~~-l~g~~~Dr~~~~~~g~rr~~l~~~~~~   77 (402)
T PRK11902          7 LGFASGLPLALTSGTLQAWMTV------EGLDIQTIGFFSLVGQA--YIFKF-LWAPLMDRYTPPLLGRRRGWLLLTQVG   77 (402)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHH--HHHHH-HHHHHHHcccccCCCcchhHHHHHHHH
Confidence            3444444444555667777765      79999999988666554  46666 889999999     6665 56666666


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHH
Q 011783          355 TIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALF  434 (477)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  434 (477)
                      .+++...+.+.....  ..+ .+....++.+++.....+...+++.|.+|+++|+++.++......+|..+++.+.+.+.
T Consensus        78 ~~l~~~~l~~~~~~~--~~~-~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~  154 (402)
T PRK11902         78 LAASIAAMAFCPPHA--ALW-PLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLA  154 (402)
T ss_pred             HHHHHHHHHhcCccc--hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            666666554442211  122 23333333456677788888999999999999999999999988999999999999887


Q ss_pred             HH-hhhhccccCCCCchHHHHHHHHHHHHHHHHH
Q 011783          435 SW-AQKRLDASFLPGSQMVFFVLNVVEAIGVLMT  467 (477)
Q Consensus       435 ~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  467 (477)
                      +. .          ||+..|++.+++.++..+..
T Consensus       155 ~~~~----------gw~~~f~i~a~~~l~~~l~~  178 (402)
T PRK11902        155 DRVL----------GWGNTYLLMAGLMLAGALTT  178 (402)
T ss_pred             hccc----------CHHHHHHHHHHHHHHHHHHH
Confidence            74 3          89999999888777665543

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=99.10  E-value=2.3e-07  Score=85.81  Aligned_cols=367  Identities=13%  Similarity=0.074  Sum_probs=185.7

Q ss_pred             HHHHHHHHhhhchhchHhHHHHHHHHhcccccchh------------------hhhhhHHHHHHHHHHHHHHhhhhhhhh
Q 011783           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREED------------------IGSYAGYVGSSFMFGRALTSVFWGLVA  106 (477)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~------------------~~~~~g~~~s~~~~~~~~~~~~~G~l~  106 (477)
                      ..|+..+++.+.+-++..+.-++.++.+.+..+.+                  ...-.+.+.-+-.+...+..+.+.+..
T Consensus         4 ~fw~~Gl~Nn~~yvv~lsaA~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~c~~~~t~~Vlladi~P~l~~Kl~aP~fi   83 (402)
T PF02487_consen    4 AFWLLGLCNNFLYVVMLSAAHDIVGEQKASPNSSHVDPDPPSTTLPSSSRRDCKSVSTGAVLLADILPSLLVKLIAPFFI   83 (402)
T ss_pred             HHHHHHHhcchhHhhhHHhHHHHhhccccCCCCCCCCCCCCCCcCCCccCCCCCcccchHHHHHHHHHHHHHHHHhHhhh
Confidence            34566666777766666666666663321110000                  111145677777788888999999999


Q ss_pred             hhcCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHH
Q 011783          107 DRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLII  185 (477)
Q Consensus       107 Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~  185 (477)
                      +|+..+.=.....++..++.++.++++|.+.=+++-.+.+++.|.--.. ..+ +..+++    ...+-++.+.+.++++
T Consensus        84 ~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y~~----~~l~~wssGTG~aGl~  158 (402)
T PF02487_consen   84 HRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFYGK----SSLSAWSSGTGGAGLV  158 (402)
T ss_pred             hhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhcCc----cccccccCCcChhhHH
Confidence            9998766667777788889999999999998888889999988876665 554 445553    3577788888888888


Q ss_pred             HHhHHHHhhhccccCCcccccccccccccchHHH-HHHHHH-hhccccccCCCCCCcc-chhhhhhhhhhccchhhcccC
Q 011783          186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPC-LCISLF-AFGETLHRHNDDDDSC-DVSYDALESASAEVKEEEGRE  262 (477)
Q Consensus       186 g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  262 (477)
                      |+..-..+...      .+..|..+ .....++. ..+..+ .+|..+..++..+.+. +...++..+.+.+..+.+...
T Consensus       159 Ga~~y~~lT~~------g~s~~~tl-l~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (402)
T PF02487_consen  159 GALYYLGLTTL------GLSPRTTL-LIMLVLPAIFLLSYFFLLPSPPTNRPYQESESEDEAEDDLLESETSESKPDSSS  231 (402)
T ss_pred             HHHHHHHHHHh------CcCHHHHH-HHHHHHHHHHHHHHHHhhccccccCCCcccCCCCcccccccccccccccccccc
Confidence            88776655541      11222222 11111221 112222 3332221111111110 000000000000000001111


Q ss_pred             Cchhhhhh-cchhhHHHHHHHHHHHhhhh-hhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011783          263 ATPKKSLL-KNWPLMSSIIVYCVFSLHDM-AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLER  340 (477)
Q Consensus       263 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~  340 (477)
                      +...++-+ +-+.+...++-.+...+..+ .-+...+......    ...-...+..+....+.++..+++- ..    .
T Consensus       232 ~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~----~~~~~r~~Y~~Y~~~YQ~GVFISRS-S~----~  302 (402)
T PF02487_consen  232 KLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPN----SFFSPRDQYRWYQLLYQLGVFISRS-SL----P  302 (402)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCc----cCCCHHHHHHHHHHHHHHHHhhhhc-ce----e
Confidence            11222111 11222222222222222222 2223333322211    1122234455566666666555543 21    1


Q ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHH
Q 011783          341 ILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMS  420 (477)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  420 (477)
                      .+.-|++..... +..+-+..+.+.....-......+.+..+..|..++..+......+.+..|+++|.-++|.....-.
T Consensus       303 ~~rir~lwils~-LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds  381 (402)
T PF02487_consen  303 FFRIRRLWILSL-LQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDS  381 (402)
T ss_pred             eeehhhHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence            222233333322 2222222221111111111122333445556777777887777778888999999999999988888


Q ss_pred             HHHHHhhhHHHHH
Q 011783          421 LFKAAGPAGGGAL  433 (477)
Q Consensus       421 ~g~~~~~~~~g~l  433 (477)
                      +|..++..++=.+
T Consensus       382 ~GI~lAgll~l~l  394 (402)
T PF02487_consen  382 LGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHHHH
Confidence            8887777665444

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.10  E-value=2.5e-09  Score=97.14  Aligned_cols=154  Identities=15%  Similarity=0.197  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHhhhchhchHhHHHHH-HHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHH
Q 011783           42 ELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (477)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~  120 (477)
                      .+....++.++..=+.+.+...-..+ .+++|++..+      ..++.....+..+++++++|+|.||+|.|+++.++++
T Consensus       253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~------lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lv  326 (438)
T COG2270         253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTE------LLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLV  326 (438)
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHH
Confidence            34444444444333333333333444 4599999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhcccc
Q 011783          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (477)
Q Consensus       121 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  199 (477)
                      +..+..+..-+...-..+.+.-.+.|.+.|..... .++.++.+|+++-++.+|+++...-.+..+||.+-+.+.+.+.+
T Consensus       327 i~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~  406 (438)
T COG2270         327 ILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGS  406 (438)
T ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc
Confidence            99888887777666666677778899998888777 99999999999999999999999999999999999999986554


Q ss_pred             CC
Q 011783          200 YP  201 (477)
Q Consensus       200 ~~  201 (477)
                      -|
T Consensus       407 ~r  408 (438)
T COG2270         407 SR  408 (438)
T ss_pred             hh
Confidence            33

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.06  E-value=1.7e-09  Score=118.01  Aligned_cols=143  Identities=13%  Similarity=0.079  Sum_probs=119.9

Q ss_pred             HHHHHHhhhchhchHhHHH-HHHHHhccccc-chhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHH
Q 011783           47 WIIVLCTALPISSLFPFLY-FMIKDFQIAKR-EEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (477)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~-~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i  124 (477)
                      .+..++...........+| .+.+++|.+.. +      .|++.+...++..+++++.|+++||+++|+++.++.++.++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~------~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~  311 (1146)
T PRK08633        238 IIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQ------VQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLAL  311 (1146)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHH------HHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHH
Confidence            3333333333344445555 55677899888 7      89999999999999999999999999999999999988888


Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhh
Q 011783          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (477)
Q Consensus       125 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (477)
                      +.++..+..+.+.+++..++.|++.+...+. .+++.+.+|+++|++++++.+....+|.++++.+++.+..
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~  383 (1146)
T PRK08633        312 SLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG  383 (1146)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888889888889999999998887776 9999999999999999999999999999998888877654

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=99.04  E-value=1.9e-08  Score=89.51  Aligned_cols=369  Identities=12%  Similarity=0.058  Sum_probs=198.6

Q ss_pred             CCchhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhh-----hcCC
Q 011783           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD-----RYGR  111 (477)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~D-----r~Gr  111 (477)
                      +..++.+..+.+.+.+.++..+... .+|.+.+.-|.|.++      .+...-++ .. -..-++|.++.|     |+||
T Consensus        27 ~~d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~------~a~fS~ay-~P-~sLKllWaPiVDs~y~k~~Gr   97 (510)
T KOG3574|consen   27 KGDRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTS------QAIFSFAY-WP-FSLKLLWAPIVDSVYSKRFGR   97 (510)
T ss_pred             hhhhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhh------hhhhhhhh-hH-HHHHHHHHhhhHHHHHHhhcc
Confidence            4445778888999999999999988 899999988888877      44433332 12 234578999999     9999


Q ss_pred             chhhHH-HHHHHHHHHHHHHh-----------hhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHH
Q 011783          112 KPVIIM-GTASVVIFNTLFGL-----------SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTA  178 (477)
Q Consensus       112 r~~~~~-~~~~~~i~~~~~~~-----------~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~  178 (477)
                      ||.-++ +..+.+....+.+.           .++...+...-++.-+..+..-.+ -.+.-.+..+++.|.+..-...+
T Consensus        98 rksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg  177 (510)
T KOG3574|consen   98 RKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVG  177 (510)
T ss_pred             ccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHH
Confidence            987443 33333333333322           233344444455666666666555 67777777788887776665555


Q ss_pred             hHHHHHHHHhHHHHhhh------ccccCCcccccc--cccc-cccchHHHHHHHHHhhccccccCCCCCCccchhhhhhh
Q 011783          179 WGIGLIIGPALGGFLAQ------PAEKYPNLFSSE--SLFG-KFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALE  249 (477)
Q Consensus       179 ~~~g~~~g~~~~~~l~~------~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  249 (477)
                      .+.|..+|..+--.+..      ...+|+.--+.-  +.+. .+.... .+.-.+..++..+.+.... +|.+.      
T Consensus       178 ~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~-~vat~Lv~~~kke~~~~~~-~e~~~------  249 (510)
T KOG3574|consen  178 QTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALF-IVATTLVALLKKENDESVD-EELEL------  249 (510)
T ss_pred             HhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHH-HHHHHHHHHhcCCCchhhh-hhhhc------
Confidence            55555555433211111      011233111100  0000 000011 1111112222111111100 00000      


Q ss_pred             hhhccchhhcccCCchhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHH
Q 011783          250 SASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLV  329 (477)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~  329 (477)
                              ..++..+..+++++-|.+..........-..+.+-....++-+.+      .|.+..+.++...+..-..++
T Consensus       250 --------~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle------~Gv~ke~Lal~~v~~~plqI~  315 (510)
T KOG3574|consen  250 --------GIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLE------HGVPKEELALIAVPLVPLQIA  315 (510)
T ss_pred             --------CHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHH------cCCChhHheeeeeehhhHHHh
Confidence                    011112245667777777665555554444444444444443333      788888877666444444444


Q ss_pred             HHHHHHHHHHHhhc-----chhHHHHHHHHHHHHHHHHHHHHHhhh------hhHHHHHHHHHHHHhhhhHHHHhHHHHH
Q 011783          330 FQLSLYPFLERILG-----PIMVARIAGVLTIPLLTSYPYIAMLSG------FGLAFLLNCASVVKNLLSVSIITGLFIL  398 (477)
Q Consensus       330 ~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (477)
                      ....++.+..++..     |+...+++.......+.  .+.+....      ....++.+....+.+++.-..+....+.
T Consensus       316 l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv--~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf  393 (510)
T KOG3574|consen  316 LPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALV--WWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAF  393 (510)
T ss_pred             hhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHH--hhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            44433333332211     12222222222222111  11111111      1233444445566667777777788888


Q ss_pred             HhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 011783          399 QNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQ  438 (477)
Q Consensus       399 ~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  438 (477)
                      .+++.||...|+.+.+.|+..++|+--=..++.++.|...
T Consensus       394 ~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt  433 (510)
T KOG3574|consen  394 HAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLT  433 (510)
T ss_pred             HhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence            9999999999999999999999999888888888888653

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.03  E-value=2.9e-09  Score=106.90  Aligned_cols=162  Identities=12%  Similarity=-0.002  Sum_probs=126.6

Q ss_pred             cCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhh--------------
Q 011783          305 KLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSG--------------  370 (477)
Q Consensus       305 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  370 (477)
                      .++++++++.+.|++.+.+.++..++.+ ..+++.||.+|++.+..+.++.+++.+++++.....+              
T Consensus        59 iek~F~lss~~~G~i~s~~~i~~~~~~i-~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~  137 (633)
T TIGR00805        59 IERRFKLSTSSSGLINGSYEIGNLLLII-FVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNL  137 (633)
T ss_pred             hhhhhCCCCCcceeeeehhhHHHHHHHH-HHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccc
Confidence            5567999999999999999999999988 8899999999999999999999888877665431100              


Q ss_pred             -------------------------------hhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHH
Q 011783          371 -------------------------------FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGM  419 (477)
Q Consensus       371 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  419 (477)
                                                     ...+..+++.-++.|++.+..++...+++.|.+|+++|+...|+.+...
T Consensus       138 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~  217 (633)
T TIGR00805       138 SSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIA  217 (633)
T ss_pred             cccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHH
Confidence                                           1134455667778888889999999999999999999999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHhhhhc-----------cccC-CCCchHHHHHHHHHHHHHHHHH
Q 011783          420 SLFKAAGPAGGGALFSWAQKRL-----------DASF-LPGSQMVFFVLNVVEAIGVLMT  467 (477)
Q Consensus       420 ~~g~~~~~~~~g~l~~~~~~~~-----------~~~~-~~g~~~~~~~~~~~~~~~~~~~  467 (477)
                      .+|..+|+.++|.+.+...+..           ..+. .++|+..|++.+++.++..+..
T Consensus       218 ~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l  277 (633)
T TIGR00805       218 VFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPF  277 (633)
T ss_pred             HhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999987653211           0011 1136777888877776655443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.02  E-value=2.7e-08  Score=84.32  Aligned_cols=370  Identities=10%  Similarity=0.019  Sum_probs=193.5

Q ss_pred             HHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHH
Q 011783           50 VLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF  129 (477)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~  129 (477)
                      .++...+...-.|.+-++-++++....+      +|.+.-+.+-...+...+.|-++||-|||+.-+.-++.+.++++ .
T Consensus        46 yslmmAgDWLQgPYvYyLYstYgFgkG~------IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-T  118 (454)
T KOG4332|consen   46 YSLMMAGDWLQGPYVYYLYSTYGFGKGD------IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-T  118 (454)
T ss_pred             HHHHHhhhhhcCceeeeeehhcCccCCc------cceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-h
Confidence            3344445566678777888899999999      99988888888899999999999999999975544444443322 2


Q ss_pred             HhhhhHHHHHHHHHHhhhcccchhhH--HHHhhhhccccchhhHHHHHHHH----hHHHHHHHHhHHHHhhhccccCCcc
Q 011783          130 GLSVNFWMAVLTRFLLGSLNGLLGPI--KAYACEIFREEHQALGLSTVSTA----WGIGLIIGPALGGFLAQPAEKYPNL  203 (477)
Q Consensus       130 ~~~~~~~~l~~~r~l~G~~~g~~~~~--~~~i~~~~~~~~r~~~~~~~~~~----~~~g~~~g~~~~~~l~~~~~~~~~~  203 (477)
                      -.++.|-.++++|.+-|+..+....+  .=++.|..+  +|+.-.-+....    ..+|.-+-.+++|...+...+|- .
T Consensus       119 KhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHne--kr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~-s  195 (454)
T KOG4332|consen  119 KHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNE--KRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTF-S  195 (454)
T ss_pred             hcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhh--ccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHh-c
Confidence            34688999999999999998886665  446777653  333322222221    22333333334443333211121 1


Q ss_pred             cccccccccccchHHHHHHHHHhhccccccCCC--CCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHHH
Q 011783          204 FSSESLFGKFPYFLPCLCISLFAFGETLHRHND--DDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIV  281 (477)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (477)
                      +|--+.|     -.+...+.+-.......|.+.  ++.+.+..              ..+.+...+.+..++++..+-..
T Consensus       196 lGPVAPF-----dAAacfLaigmAvil~~W~ENygdps~~kdl--------------ltqf~gaa~aiaSD~ki~LLG~i  256 (454)
T KOG4332|consen  196 LGPVAPF-----DAAACFLAIGMAVILSSWSENYGDPSENKDL--------------LTQFKGAARAIASDEKIALLGAI  256 (454)
T ss_pred             cCCCCch-----HHHHHHHHHHHHHHHhhhhhccCChhhhHHH--------------HHHhhHhHHHHhcchHHHHHHHH
Confidence            2322223     222222111111100111111  11111111              12223345566677776665555


Q ss_pred             HHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHH
Q 011783          282 YCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG--PIMVARIAGVLTIPLL  359 (477)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~  359 (477)
                      ..++-...+.+     .++.+|....  +-...--|.+++.+.+..++++- +..++..|-.  ......+.+++....+
T Consensus       257 qsLFE~smytF-----VFLWTPaLsp--n~e~iPhGfiFatFMlASmLGSS-la~Rl~s~s~~~ve~ymqivf~vs~a~l  328 (454)
T KOG4332|consen  257 QSLFEGSMYTF-----VFLWTPALSP--NDEEIPHGFIFATFMLASMLGSS-LASRLLSRSSPKVESYMQIVFLVSIAAL  328 (454)
T ss_pred             HHHHhhhhhee-----eeeecccCCC--CcccCCchhHHHHHHHHHHHhhH-HHHHHHhcCCcccchHHHHHHHHHHHHH
Confidence            55443322222     1222231110  01112257888888888888887 5545544433  2344445554444443


Q ss_pred             HHHHHHHHh-hhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 011783          360 TSYPYIAML-SGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQ  438 (477)
Q Consensus       360 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  438 (477)
                      .+....... ++......-.+.+.+.-.+.+..+|...-+-.+..|++.|++.+-.+..--++-.-++      ++....
T Consensus       329 ~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLnifvClv------Lynlh~  402 (454)
T KOG4332|consen  329 LLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLV------LYNLHV  402 (454)
T ss_pred             HHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhHhhhhh------heeccc
Confidence            333222211 1111111223333444566788899999999999999999887665543323222221      222111


Q ss_pred             hhccccCCCCchHHHHHHHHHHHHHHHH
Q 011783          439 KRLDASFLPGSQMVFFVLNVVEAIGVLM  466 (477)
Q Consensus       439 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~  466 (477)
                      +..    ..+-+..|-++.+...++.+.
T Consensus       403 ~~~----p~~tr~mf~icS~~~~~a~i~  426 (454)
T KOG4332|consen  403 DAF----PTTTRNMFGICSAFLFVASIL  426 (454)
T ss_pred             ccC----ccccchhhhhhHHHHHHHHHH
Confidence            110    014456777776666666444

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.00  E-value=3.1e-08  Score=94.96  Aligned_cols=164  Identities=13%  Similarity=0.026  Sum_probs=114.4

Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHHHHHHHHH----hhcchhHHHHH-HHHHHHHHHHHHHHHHhh-----------hhh
Q 011783          309 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLER----ILGPIMVARIA-GVLTIPLLTSYPYIAMLS-----------GFG  372 (477)
Q Consensus       309 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----------~~~  372 (477)
                      +|.+....+.+.....+...+.++ +.|+++|    |+|||+....+ .....+++.++++.....           ...
T Consensus        34 lg~~~~~~~~i~~~~~l~~~i~~P-i~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~  112 (477)
T TIGR01301        34 LGIPHAWASIIWLCGPLSGLLVQP-LVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPR  112 (477)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHh-HeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhH
Confidence            789999999999999999999999 8899999    59999988775 444445555554433211           001


Q ss_pred             HHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchh--hHHhHHHHHHHHHHHHHhhhHHHHH--HHHhhh---hccccC
Q 011783          373 LAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQR--GAANGIAMTGMSLFKAAGPAGGGAL--FSWAQK---RLDASF  445 (477)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~g~~~~~~~~g~~~~~~~~g~l--~~~~~~---~~~~~~  445 (477)
                      ..........+..+......+...+++.|.+|+++|  +.+.++.+....+|+.+|+.+++..  .+....   ......
T Consensus       113 ~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~  192 (477)
T TIGR01301       113 AIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVS  192 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccc
Confidence            112223333334566677778889999999998865  6899999999999999999998875  222111   000111


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHhhhhhhc
Q 011783          446 LPGSQMVFFVLNVVEAIGVLMTFKPFLAQ  474 (477)
Q Consensus       446 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (477)
                      ..+++..|++.+++.+++.++..+ ..||
T Consensus       193 ~~~~~~~F~i~a~~l~i~~l~t~~-~v~E  220 (477)
T TIGR01301       193 CANLKSCFLIDIILLAILTYIALS-AVKE  220 (477)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHee-eeec
Confidence            126788999998888888887766 3444

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.99  E-value=6.9e-09  Score=88.63  Aligned_cols=149  Identities=18%  Similarity=0.233  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHhhhchhchHhHHH-HHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHH
Q 011783           43 LFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (477)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~  121 (477)
                      ++++...+++.+....-+..+-| .+++.||.|+.+      .+.+.+....-.++.+++.|.++||+|++...+.+..+
T Consensus       266 fw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~------a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~  339 (459)
T KOG4686|consen  266 FWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVS------AGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACI  339 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhh------ccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHH
Confidence            34444444444433332333334 678999999999      88888888888899999999999999999887766544


Q ss_pred             HHH-HHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhcccc
Q 011783          122 VVI-FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (477)
Q Consensus       122 ~~i-~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  199 (477)
                      ..+ +-....+  +++.=.++..+.|+........ ...++...|+++.|++.|..+...++|..+-|+++|.+.+...+
T Consensus       340 ~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~  417 (459)
T KOG4686|consen  340 LTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGS  417 (459)
T ss_pred             HHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCc
Confidence            433 3333333  2233355667888888877776 88889999999999999999999999999999999999985544

>PTZ00207 hypothetical protein; Provisional

Probab=98.99  E-value=1.1e-07  Score=93.27  Aligned_cols=148  Identities=17%  Similarity=0.081  Sum_probs=100.6

Q ss_pred             CccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 011783          307 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL  386 (477)
Q Consensus       307 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (477)
                      +++|++..+.+.+...... ....++ ..|++.||+|+|+++.++.++..++.++..+............+.+...+.+.
T Consensus        55 ~~lgls~~~l~~i~svg~~-~g~~~l-p~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~  132 (591)
T PTZ00207         55 ARYNLTQRDLSTITTVGIA-VGYFLL-PYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTL  132 (591)
T ss_pred             HHhCcCHHHHHHHHHHHHH-HHHHHH-HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence            4489999999988776333 334455 67999999999999999999999998877765221100112233333444556


Q ss_pred             hhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHH
Q 011783          387 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM  466 (477)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  466 (477)
                      +.+...+.....+.+.+| ++||++.|+......+|+++.+.+...++..           +++..|++.+++.++..++
T Consensus       133 G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~-----------~~~~~fl~l~vl~~vv~ll  200 (591)
T PTZ00207        133 GCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD-----------NTSAYFFFLMSFALVVGIL  200 (591)
T ss_pred             HHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHHHHH
Confidence            666666777777788887 7899999999999999998655554444431           3455666666666555444


Q ss_pred             Hh
Q 011783          467 TF  468 (477)
Q Consensus       467 ~~  468 (477)
                      ..
T Consensus       201 ~~  202 (591)
T PTZ00207        201 AI  202 (591)
T ss_pred             HH
Confidence            43

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.98  E-value=2.3e-07  Score=92.67  Aligned_cols=131  Identities=16%  Similarity=0.195  Sum_probs=106.8

Q ss_pred             chHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhh-cCCchhhHHHHHHHHHHHHHHHhhh----
Q 011783           59 SLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGTASVVIFNTLFGLSV----  133 (477)
Q Consensus        59 ~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~Grr~~~~~~~~~~~i~~~~~~~~~----  133 (477)
                      +...+..++.+.+|.+.++      ...+...+....-+..+++|+++|+ +||++.+.++.++..++.++.+++.    
T Consensus         6 m~aiLvlYl~~~lg~~~~~------A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~   79 (654)
T TIGR00926         6 MRTILVLYFLNFLGFSEST------STVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSS   79 (654)
T ss_pred             cHHHHHHHHHHHcCCcHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccc
Confidence            3445556777888998888      7788888888888899999999997 5999999999999999988877642    


Q ss_pred             ----hHHHHHHHHHHhhhcccchhhH-HHHhhhhcccc---chhhHHHHHHHHhHHHHHHHHhHHHHhhh
Q 011783          134 ----NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE---HQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (477)
Q Consensus       134 ----~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~---~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (477)
                          .....+++-.+..+|.|..-|+ .+...|.++++   +|-..+.++..+.++|..+++.+.+++.+
T Consensus        80 ~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~  149 (654)
T TIGR00926        80 GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRG  149 (654)
T ss_pred             ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                1233556667777889999898 99999999754   47788889999999999999999988875

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.98  E-value=2.5e-09  Score=104.56  Aligned_cols=149  Identities=11%  Similarity=0.047  Sum_probs=111.9

Q ss_pred             hHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHH
Q 011783           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (477)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~  120 (477)
                      +.+..+....++............+++.++...+.+.      .+++.+...++..++.+++++++||+|+|+.+.++.+
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~------~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~  304 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADL------FPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASI  304 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            4455555556655566566655556555554334444      6777777778899999999999999999999998888


Q ss_pred             HHHHHHHHHHh-----hhhHHHHHHHHHHhhhcccchhhH-HHHhhhhcc-------ccchhhHHHHHHHHhHHHHHHHH
Q 011783          121 SVVIFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-------EEHQALGLSTVSTAWGIGLIIGP  187 (477)
Q Consensus       121 ~~~i~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~  187 (477)
                      +..++.+....     .++.+.+++.-++.|++.+...+. .++++|..+       +++.|..++......-+|..+++
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~  384 (473)
T PRK10429        305 FPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAA  384 (473)
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHH
Confidence            77766555432     345677777778889988887776 999999966       33456688999999999999999


Q ss_pred             hHHHHhhh
Q 011783          188 ALGGFLAQ  195 (477)
Q Consensus       188 ~~~~~l~~  195 (477)
                      .+.|++.+
T Consensus       385 ~i~g~~l~  392 (473)
T PRK10429        385 FFIGVVLG  392 (473)
T ss_pred             HHHHHHHH
Confidence            99999876

>PRK09848 glucuronide transporter; Provisional

Probab=98.96  E-value=2.7e-09  Score=103.87  Aligned_cols=149  Identities=16%  Similarity=0.142  Sum_probs=112.2

Q ss_pred             hHHHHHHHHHHHhhhchhchHhHHHHHHH-HhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHH
Q 011783           41 TELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (477)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~  119 (477)
                      +.+....+..++............|.+.+ .+|.++..      .++......++..++.++++++.||+|+|+++.++.
T Consensus       228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~  301 (448)
T PRK09848        228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLF------TVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGA  301 (448)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            33444445555555554555555564443 46655544      445455556778889999999999999999999999


Q ss_pred             HHHHHHHHHHHhhh--hHHHHHHHHHHhhhcccchhhH-HHHhhhhcccc-------chhhHHHHHHHHhHHHHHHHHhH
Q 011783          120 ASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE-------HQALGLSTVSTAWGIGLIIGPAL  189 (477)
Q Consensus       120 ~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~g~~~  189 (477)
                      ++..++.++..+.+  +++.+++..++.|+|.+...+. .++.+|..|.+       ++|...+..+....+|..+|+.+
T Consensus       302 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i  381 (448)
T PRK09848        302 LLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSI  381 (448)
T ss_pred             HHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHH
Confidence            88888877776643  6777777788899998887777 88999988754       35899999999999999999999


Q ss_pred             HHHhhh
Q 011783          190 GGFLAQ  195 (477)
Q Consensus       190 ~~~l~~  195 (477)
                      .+.+.+
T Consensus       382 ~g~~l~  387 (448)
T PRK09848        382 PAFILG  387 (448)
T ss_pred             HHHHHH
Confidence            998876

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.94  E-value=4.8e-08  Score=90.82  Aligned_cols=177  Identities=16%  Similarity=0.145  Sum_probs=117.0

Q ss_pred             hcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Q 011783          270 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  349 (477)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  349 (477)
                      .||++++.....++++++....+.++++.|+.+.     .|++..++|.+++...+..++.++ +.|.+.||.+.|+-+.
T Consensus         4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~-----~GLs~~~iG~i~s~~~~~~l~~qp-~~G~i~Dklg~kK~Ll   77 (412)
T PF01306_consen    4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQV-----AGLSGTEIGIIFSAGSLFALLAQP-VYGFISDKLGLKKHLL   77 (412)
T ss_dssp             CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H---HHHHHHHHHHHHHHHHHTHH-HHHHHHHHCTTCSHHH
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccc-----cCCCHHHHHHHHHHHHHHHHHHHH-hHHHhcchhhhhHHHH
Confidence            4678899999999999999999999999999864     799999999999999999999999 8899999999665544


Q ss_pred             HHHHHHHH--H-HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHh
Q 011783          350 IAGVLTIP--L-LTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAG  426 (477)
Q Consensus       350 ~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~  426 (477)
                      .......+  + ...+.+.+... ...+...++..+..++......|..-++..+.  .++.+--.|=..+.+++|.+++
T Consensus        78 ~~i~~l~~l~~pff~~v~~pll~-~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~--sr~~~feYG~~R~wGSig~ai~  154 (412)
T PF01306_consen   78 WFIAILLLLFGPFFIYVFGPLLQ-SNFWLGAIIGGIYLGLVFNAGVPLSEAYAERV--SRRNGFEYGRARMWGSIGFAIA  154 (412)
T ss_dssp             HHHHHHHHTCHHHHHHTHHHHHH-TT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHH--HHHHSS-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcccchHHHHHHHHH--HHHhcCCcchHHHHhhHHHHHH
Confidence            33322221  1 12222222211 11222333333333445555666666665553  2445556777888999999999


Q ss_pred             hhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHH
Q 011783          427 PAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM  466 (477)
Q Consensus       427 ~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  466 (477)
                      ..++|.+++..           .+..|++..+..++..++
T Consensus       155 s~~~G~L~~i~-----------p~~~fwi~s~~~~il~ll  183 (412)
T PF01306_consen  155 SLLAGILFNIN-----------PNIIFWIASAAAIILLLL  183 (412)
T ss_dssp             HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHhheeeeeC-----------ccHHHHHHHHHHHHHHHH
Confidence            99999999864           345666655544444433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.94  E-value=1.4e-08  Score=94.60  Aligned_cols=182  Identities=13%  Similarity=0.056  Sum_probs=141.2

Q ss_pred             chhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHH
Q 011783          272 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-GPIMVARI  350 (477)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~  350 (477)
                      .|.++.+...-+.--+.+++....+..|++...... +|++.+++.-+++.++.-.-+... ++||++||+ |+|+.+.+
T Consensus        20 Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~g-Lg~~~~~A~~l~~~y~slVY~t~i-~GG~laDr~LG~~~tI~l   97 (498)
T COG3104          20 PRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDG-LGFDETHATGLFSAYGSLVYLTPI-IGGWLADRVLGTRRTIVL   97 (498)
T ss_pred             CchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccc-CCcChHhhHHHHHHHHHHHHHHHH-HHHHHHHHhcchhHHHHH
Confidence            455667777777778888888889998888764433 779999888777777666666655 899999995 89999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcc--hhhHHhHHHHHHHHHHHHHhhh
Q 011783          351 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQD--QRGAANGIAMTGMSLFKAAGPA  428 (477)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~g~~~~~~  428 (477)
                      +.++..++.+.+...... +   ...+.+...+...+.+..=+...+++.+.+|++  +|-..+++..+..++|+.++|.
T Consensus        98 Gail~~iGh~~L~~~~~~-~---~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~  173 (498)
T COG3104          98 GAILMAIGHLVLAISSVS-G---PGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPI  173 (498)
T ss_pred             HHHHHHHHHHHHhccccc-c---ccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHH
Confidence            999999998888776410 1   112333334444677777788888999988754  3666777778888999999999


Q ss_pred             HHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          429 GGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       429 ~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      +.+++.++.          ||+..|...++-..++.+..+.
T Consensus       174 i~~~~~~~~----------g~~~gF~~aavGm~~gl~~f~~  204 (498)
T COG3104         174 ITGLLAINY----------GWHVGFGLAAVGMIIGLVIFLL  204 (498)
T ss_pred             HHHHHHHhh----------CHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998          9999999999998888887765

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.92  E-value=3.2e-08  Score=88.45  Aligned_cols=119  Identities=13%  Similarity=0.016  Sum_probs=97.2

Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh
Q 011783          309 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS  388 (477)
Q Consensus       309 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (477)
                      .+-+....|++-+.+.+...+.++ ..|.++||+|||+++.++.+...+..++.+...+..      .+...=++ +...
T Consensus        63 ~~~~~~yaGflGSsF~ilQ~~sS~-~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~------afv~aR~l-~Gi~  134 (451)
T KOG2615|consen   63 DGASVFYAGFLGSSFSILQFISSP-LWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFA------AFVLARFL-GGIF  134 (451)
T ss_pred             ccccchhhhhHhhHHHHHHHHhhh-hhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHh-hhhc
Confidence            345667789999999999999999 899999999999999999999888877777766521      12221222 2334


Q ss_pred             HHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHH
Q 011783          389 VSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFS  435 (477)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  435 (477)
                      .+......++++|++++|+|+.+++.++....+|.++||.++|++..
T Consensus       135 kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  135 KGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             cCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            55667778999999999999999999999999999999999999987

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.91  E-value=4.5e-08  Score=93.82  Aligned_cols=148  Identities=18%  Similarity=0.208  Sum_probs=130.6

Q ss_pred             CccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 011783          307 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL  386 (477)
Q Consensus       307 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (477)
                      .++++++.+-+++++....+.+++++ -++++.||+|.|+++..+.++..+.-++.++.......    .+++.=++.|+
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~i-P~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~----~~~~~R~lqGl  140 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQI-PGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFY----LLLVLRFLQGL  140 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHc-CcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcch----hhHHHHHHhHH
Confidence            35899999999999999999999998 88999999999999999999999988888887664322    44555666788


Q ss_pred             hhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHH-hhhhccccCCCCchHHHHHHHHHHHHHHH
Q 011783          387 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSW-AQKRLDASFLPGSQMVFFVLNVVEAIGVL  465 (477)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  465 (477)
                      +.+..+|....+..+-.|+++|++..++.....++|.+++-.++|.+-+. .          ||+.+|++.+++.++-.+
T Consensus       141 ~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~----------GW~sifY~~g~~g~i~~~  210 (466)
T KOG2532|consen  141 GQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSL----------GWPSIFYVFGIVGLIWFI  210 (466)
T ss_pred             HHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCC----------CCchHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999988 5          999999999998888777


Q ss_pred             HHhh
Q 011783          466 MTFK  469 (477)
Q Consensus       466 ~~~~  469 (477)
                      +.+.
T Consensus       211 ~w~~  214 (466)
T KOG2532|consen  211 LWFL  214 (466)
T ss_pred             HHHH
Confidence            6554

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.91  E-value=3.5e-09  Score=93.88  Aligned_cols=95  Identities=21%  Similarity=0.311  Sum_probs=78.1

Q ss_pred             HHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhhhh--H--HHHHHHHHHhhhcccchhhHHHHhhhhccccch
Q 011783           93 FGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN--F--WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQ  168 (477)
Q Consensus        93 ~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~--~--~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r  168 (477)
                      +.-.-|.++.+++.||+|||+.|..+.+++++..++.....+  .  .++..+|++.   .|++..++.|..|++|.+-|
T Consensus       392 laefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafi---sg~fqvaYvYtPEVyPTavR  468 (528)
T KOG0253|consen  392 LAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFI---SGAFQVAYVYTPEVYPTAVR  468 (528)
T ss_pred             HhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH---hchheEEEEecCcccchhhh
Confidence            345678899999999999999999999999999887766542  2  3344556443   34455568899999999999


Q ss_pred             hhHHHHHHHHhHHHHHHHHhHH
Q 011783          169 ALGLSTVSTAWGIGLIIGPALG  190 (477)
Q Consensus       169 ~~~~~~~~~~~~~g~~~g~~~~  190 (477)
                      +...|..+.+.-+|.++.|+++
T Consensus       469 atgvGtcSsmaRIggI~~p~iA  490 (528)
T KOG0253|consen  469 ATGVGTCSSMARIGGIFSPVIA  490 (528)
T ss_pred             hcchhhhhhHHhhhhhhhhHHH
Confidence            9999999999999999999999

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.88  E-value=6.1e-08  Score=94.46  Aligned_cols=142  Identities=12%  Similarity=0.055  Sum_probs=97.6

Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh
Q 011783          309 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS  388 (477)
Q Consensus       309 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (477)
                      .|-+ ....++.....+...+..+ +.++++|.+|||...+.+.++..++.++.....+..      .++....+.+++.
T Consensus        74 iG~~-~~~~w~~~~~~l~~av~~~-~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~------~~iag~~l~Gvga  145 (599)
T PF06609_consen   74 IGGS-DNWSWFSTAWTLASAVSFP-FVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMN------TFIAGMVLYGVGA  145 (599)
T ss_pred             cCCC-ccchHHHHHHHHHHHHHHH-hhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHH------HHHHHHHHHHHhh
Confidence            5654 3456666677777777777 889999999999999999999999988776655533      3444444445543


Q ss_pred             HHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHh
Q 011783          389 VSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF  468 (477)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  468 (477)
                      + ........++|..|.+.|+...++.....-.....+|.++..+..+.          +|++.|++..++..++++..+
T Consensus       146 G-~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~----------~WRw~~~~~~i~~~i~~vl~~  214 (599)
T PF06609_consen  146 G-VQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHS----------GWRWIFYIFIIWSGIALVLIF  214 (599)
T ss_pred             H-HHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCC----------CcchHHHHHHHHHHHHHHHHH
Confidence            3 33345666899999999988776655444344445555544433322          899999999888777766554


Q ss_pred             h
Q 011783          469 K  469 (477)
Q Consensus       469 ~  469 (477)
                      +
T Consensus       215 ~  215 (599)
T PF06609_consen  215 F  215 (599)
T ss_pred             H
Confidence            4

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.87  E-value=5.7e-08  Score=89.51  Aligned_cols=145  Identities=30%  Similarity=0.477  Sum_probs=121.7

Q ss_pred             HHHHHHHhhhchhchHhHHHHHHHHhcccc--cchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHH
Q 011783           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAK--REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (477)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~  123 (477)
                      .....+....+.....+..+.+.++++.+.  .+      .++..+.+.++..+++++.|.++||+|||+.+..+.....
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~   80 (338)
T COG0477           7 LALAALLLGLDLGLLSPALPLLLSTLSLSSGRLL------YGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFL   80 (338)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHcCCCchhHH------HHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHH
Confidence            344444455677777788888888888776  36      8999999999999999999999999999998888887766


Q ss_pred             HHHHHHHhhhh--HHHHHHHHHHhhhcccchhhH-HHHhhhhccc-cchhhHHHHHHH-HhHHHHHHHHhHHHHhhhc
Q 011783          124 IFNTLFGLSVN--FWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE-EHQALGLSTVST-AWGIGLIIGPALGGFLAQP  196 (477)
Q Consensus       124 i~~~~~~~~~~--~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~-~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~~~  196 (477)
                      ++.+..++..+  .+.+++.|+.+|++.+...+. .+++.|+.|+ ++|+...+.... ...+|..++|.+++.+...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T COG0477          81 LGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA  158 (338)
T ss_pred             HHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66677777666  999999999999999988887 9999999998 789999998888 6888999999888887764

>PRK09669 putative symporter YagG; Provisional

Probab=98.86  E-value=1.8e-08  Score=97.96  Aligned_cols=147  Identities=15%  Similarity=0.188  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHH
Q 011783           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (477)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~  122 (477)
                      +..+....++............+++.++.-.+++.      .+.+.....+...++.+++++++||+|+|+.+..+.++.
T Consensus       231 ~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~------~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~  304 (444)
T PRK09669        231 WRIMFIFNVVLLTAVVTRGGATLYYVNYVLLRPDL------ATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAF  304 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhheeeeeecCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            33344444444444444444444444433222222      456666777888899999999999999999999888766


Q ss_pred             HHHHHHHHh--hhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccc-------cchhhHHHHHHHHhHHHHHHHHhHHHH
Q 011783          123 VIFNTLFGL--SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE-------EHQALGLSTVSTAWGIGLIIGPALGGF  192 (477)
Q Consensus       123 ~i~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~  192 (477)
                      ++......+  .++.+.+++..++.|++.+...+. .++++|..+.       ++.|..++..+....+|..+|+.++|.
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~  384 (444)
T PRK09669        305 VILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGW  384 (444)
T ss_pred             HHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            654433322  357777888889999999888888 9999998862       334667888999999999999999999


Q ss_pred             hhh
Q 011783          193 LAQ  195 (477)
Q Consensus       193 l~~  195 (477)
                      +.+
T Consensus       385 ll~  387 (444)
T PRK09669        385 ILA  387 (444)
T ss_pred             HHH
Confidence            887

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.86  E-value=7e-08  Score=83.81  Aligned_cols=132  Identities=14%  Similarity=0.197  Sum_probs=108.8

Q ss_pred             chhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhh---
Q 011783           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS---  132 (477)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~---  132 (477)
                      ..+.++..-|.+.+.+|.+.+|      ...+.++..+|..+ .++.|.+.|++|+|.++.+|.+...++..+...+   
T Consensus        17 t~Y~Fs~yS~~Lk~~l~~sq~~------l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~   89 (250)
T PF06813_consen   17 TTYTFSAYSPQLKSRLGYSQSQ------LNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSG   89 (250)
T ss_pred             cccchhhhhHHHHHHhCCCHHH------HHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3456667778999999999999      99999999999886 4899999999999999999999999998877653   


Q ss_pred             ----hhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhh
Q 011783          133 ----VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (477)
Q Consensus       133 ----~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (477)
                          .++|.+.+..++.|.+.+....+ .....+.|| ++||++.|+.-...+++..+-..+...+.+
T Consensus        90 ~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~  156 (250)
T PF06813_consen   90 RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFG  156 (250)
T ss_pred             ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence                36788888888888887766555 566668887 689999999999999988776666555544

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.80  E-value=1.2e-06  Score=79.64  Aligned_cols=187  Identities=9%  Similarity=-0.051  Sum_probs=133.9

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 011783          278 SIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIP  357 (477)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  357 (477)
                      ....++.+.+.........|.+-. .     ++.+..+++++......+..+.++ -.+++.||+|.|+.+..++.+.++
T Consensus        18 ~t~lFfl~G~~~~l~diLip~l~~-~-----f~ls~~~a~liqfaff~gYf~~~l-pa~~~~kk~gyk~gi~lgL~l~av   90 (422)
T COG0738          18 LTSLFFLWGFITCLNDILIPHLKE-V-----FDLTYFEASLIQFAFFGGYFIMSL-PAGLLIKKLGYKAGIVLGLLLYAV   90 (422)
T ss_pred             HHHHHHHHHHHhhcchhhHHHHHH-H-----hCccHHHHHHHHHHHHHHHHHHhc-cHHHHHHHhhhHHHHHHHHHHHHH
Confidence            334444444444444455554333 2     899999999999999999999888 889999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHh
Q 011783          358 LLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWA  437 (477)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  437 (477)
                      ++.++.-.....   .+..+++..++.+.+.+..-.....++...-|++....-+.+.+.++.+|++++|.+++.+..+.
T Consensus        91 g~~lF~pAa~~~---~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~  167 (422)
T COG0738          91 GAALFWPAASSK---SYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSG  167 (422)
T ss_pred             HHHHHhhhhhhh---hHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence            988775443322   23344444455566667777888888899899888899999999999999999999999998841


Q ss_pred             hh---------hccccCCCCchHHHHHHHHHHHHHHHHHhhhhhhc
Q 011783          438 QK---------RLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQ  474 (477)
Q Consensus       438 ~~---------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (477)
                      ..         .....+...++.+|...+...++..+.......|+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~  213 (422)
T COG0738         168 VALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPD  213 (422)
T ss_pred             hhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCc
Confidence            00         00001111477888888877777666655533343

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.74  E-value=4.7e-08  Score=68.24  Aligned_cols=81  Identities=16%  Similarity=0.271  Sum_probs=74.9

Q ss_pred             hhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhh
Q 011783           53 TALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS  132 (477)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~  132 (477)
                      ..+++..+.|.+|.+++|.++|.++      .|++.+...+||.+|.+...++.++..+++.+..+++...+..+.+++.
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~------ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQ------AGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567788999999999999999999      9999999999999999999999999989999999999999999999999


Q ss_pred             hhHHHHH
Q 011783          133 VNFWMAV  139 (477)
Q Consensus       133 ~~~~~l~  139 (477)
                      ++++...
T Consensus        78 ~~~~~w~   84 (85)
T PF06779_consen   78 HSFWLWS   84 (85)
T ss_pred             hchHHHh
Confidence            8876543

Note that many members are hypothetical proteins.

>PRK11462 putative transporter; Provisional

Probab=98.73  E-value=1.5e-07  Score=91.62  Aligned_cols=148  Identities=11%  Similarity=0.122  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHH
Q 011783           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (477)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~  122 (477)
                      +..+....++..+..........++.+....+++.      .+.+.+.+.++..++.+++++++||+|+|+++..+..+.
T Consensus       230 ~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~~------~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~  303 (460)
T PRK11462        230 WRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPEV------FVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALL  303 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChHH------HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            33444444555555555555555555554433333      567778888899999999999999999999887665544


Q ss_pred             HHHHHHHHhhh--hHHHHHHHHHHhhhcccchhhH-HHHhhhhcc-------ccchhhHHHHHHHHhHHHHHHHHhHHHH
Q 011783          123 VIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-------EEHQALGLSTVSTAWGIGLIIGPALGGF  192 (477)
Q Consensus       123 ~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~~  192 (477)
                      ++..++..+.+  +...+++.-++.|++.+...+. .++++|..+       +++.|..++.......+|..+|+.++|.
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~  383 (460)
T PRK11462        304 AVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGW  383 (460)
T ss_pred             HHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44333333322  2334445556678777666666 778888776       3334555677778899999999999998


Q ss_pred             hhhc
Q 011783          193 LAQP  196 (477)
Q Consensus       193 l~~~  196 (477)
                      +.+.
T Consensus       384 iL~~  387 (460)
T PRK11462        384 MLAY  387 (460)
T ss_pred             HHHH
Confidence            8763

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.72  E-value=1.3e-07  Score=88.98  Aligned_cols=149  Identities=12%  Similarity=0.206  Sum_probs=117.5

Q ss_pred             hHHHHHHHHHHHhhhchhchHhHHHHHHHH-hcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHH
Q 011783           41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (477)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~  119 (477)
                      |.+..+.+..++......+......++.+. +|.++.+      ..+.......+..++.+++.++.+|+|+|+++.++.
T Consensus       236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~------~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~  309 (467)
T COG2211         236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELF------AYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGL  309 (467)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHH
Confidence            445555556666666666666666655433 4444444      667778888888888999999999999999999999


Q ss_pred             HHHHHHHHHHHhhh--hHHHHHHHHHHhhhcccchhhH-HHHhhhhccc-------cchhhHHHHHHHHhHHHHHHHHhH
Q 011783          120 ASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE-------EHQALGLSTVSTAWGIGLIIGPAL  189 (477)
Q Consensus       120 ~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~  189 (477)
                      ++..++.++..+.+  +.+.+++..++.+++.+...+. .++++|..+-       ++-|...+......=+|..++..+
T Consensus       310 ~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~  389 (467)
T COG2211         310 LLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFI  389 (467)
T ss_pred             HHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999888876  7888999999999999998887 8888887752       344677788888888899999888


Q ss_pred             HHHhhh
Q 011783          190 GGFLAQ  195 (477)
Q Consensus       190 ~~~l~~  195 (477)
                      .|++..
T Consensus       390 ~g~~L~  395 (467)
T COG2211         390 PGWILG  395 (467)
T ss_pred             HHHHHH
Confidence            888776

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.70  E-value=8e-07  Score=79.44  Aligned_cols=153  Identities=16%  Similarity=0.132  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhc-CCchhhHHHHHH
Q 011783           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVIIMGTAS  121 (477)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-Grr~~~~~~~~~  121 (477)
                      -+.+.+..-+..+..+....-+|.+..|-|.|..+      .|++.+...+.....++....+++|. ++|+..+....+
T Consensus       210 aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~------aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~  283 (395)
T COG2807         210 AWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAE------AGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLL  283 (395)
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHH------hhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            44455555566677778888899999999999999      99999999999999999999999965 788888888888


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhcc-ccchhhHHHHHHHHhHHHHHHHHhHHHHhhhcccc
Q 011783          122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (477)
Q Consensus       122 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  199 (477)
                      +.++.+.+.+.+.-..++- -++.|+|.|...|. ...+.+..+ +++-++-.++.+....+=..+||.+.|++.+..++
T Consensus       284 ~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gs  362 (395)
T COG2807         284 MLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGS  362 (395)
T ss_pred             HHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCC
Confidence            8888888888764433333 48999998888887 888887776 45556666677777777788899999999997766


Q ss_pred             CCc
Q 011783          200 YPN  202 (477)
Q Consensus       200 ~~~  202 (477)
                      |+.
T Consensus       363 w~~  365 (395)
T COG2807         363 WSA  365 (395)
T ss_pred             hHH
Confidence            643

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.69  E-value=7.1e-07  Score=85.92  Aligned_cols=155  Identities=15%  Similarity=0.075  Sum_probs=118.0

Q ss_pred             CccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 011783          307 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL  386 (477)
Q Consensus       307 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (477)
                      ++.++...+.+.+.+.+.++.+++.+ .++.+.||++..+.+....++..+..++-....+      ...+++.-++.|+
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~-p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s------~~~~ialr~llGl  146 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQF-PSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHS------FPGLIALRFLLGL  146 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHh-hHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHH
Confidence            45677788899999999999999999 8999999999555554444443333322222222      2345556667788


Q ss_pred             hhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHH
Q 011783          387 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM  466 (477)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  466 (477)
                      +.+..+|....++...+.+++||..+|+.+....+|+++|+.++..+.+..+...-    .||++.|++-+++.++..++
T Consensus       147 ~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~----~gW~~~FiI~G~i~~~~gi~  222 (495)
T KOG2533|consen  147 FESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGL----AGWRWLFIIEGVITLVLGIV  222 (495)
T ss_pred             HhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCc----CCceeehhHHHHHHHHHHhe
Confidence            99999999999999999999999999999999999999999998887763322111    28999999999988888776


Q ss_pred             Hhhhhhh
Q 011783          467 TFKPFLA  473 (477)
Q Consensus       467 ~~~~~~~  473 (477)
                      .++ ++|
T Consensus       223 ~f~-~lp  228 (495)
T KOG2533|consen  223 VFF-FLP  228 (495)
T ss_pred             EEE-Eec
Confidence            655 344

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.65  E-value=2.3e-06  Score=84.67  Aligned_cols=144  Identities=15%  Similarity=-0.024  Sum_probs=113.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHh
Q 011783          314 QMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIIT  393 (477)
Q Consensus       314 ~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (477)
                      .+.+++.+...++..++++ +.++++|++|||+.+..+.+...++.++.....+      ...+.+.=++.|++.++...
T Consensus        89 ~~~s~~~s~~~lga~~g~l-~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~------~~~l~~GR~l~G~g~G~~~~  161 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSL-LAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPS------WYQLIVGRILTGLGVGGASV  161 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHhccchhhhhh
Confidence            3458999999999999999 8999999999999999999999999888877764      33566666777888888888


Q ss_pred             HHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhhhhhh
Q 011783          394 GLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLA  473 (477)
Q Consensus       394 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  473 (477)
                      ....+.+|..|++.||...+..+....+|..++ .+.+...++. .       .+|+..+.+..+.+++-.+..++  .|
T Consensus       162 ~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~-~-------~~Wr~~~~~~~i~~~~~~~~~~~--~p  230 (513)
T KOG0254|consen  162 LAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKV-Y-------AGWRIPLGLALIPAVILALGMLF--LP  230 (513)
T ss_pred             cchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccC-C-------ccHHHHHHHHHHHHHHHHHHHHh--CC
Confidence            889999999999999999999999888888777 5444444332 1       17888887777777766666333  55


Q ss_pred             cc
Q 011783          474 QR  475 (477)
Q Consensus       474 ~~  475 (477)
                      |+
T Consensus       231 es  232 (513)
T KOG0254|consen  231 ES  232 (513)
T ss_pred             CC
Confidence            43

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.64  E-value=1.2e-07  Score=88.78  Aligned_cols=152  Identities=21%  Similarity=0.340  Sum_probs=130.5

Q ss_pred             HHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHH
Q 011783           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (477)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~  125 (477)
                      +++..++.+...+.+...+-...||.+..+.-      .|........+-++.-++.+++.+|+|+-+++.+++.+..+=
T Consensus       376 ff~~av~mG~g~~lv~tFLfWHled~~~~~~L------fGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~R  449 (618)
T KOG3762|consen  376 FFFVAVVMGAGVGLVFTFLFWHLEDLGGIKTL------FGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGR  449 (618)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcCCccee------eeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHH
Confidence            44455555666666667777778888877777      888888888888999999999999999999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHH-HhHHHHHHHHhHHHHhhhccccCCcc
Q 011783          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVST-AWGIGLIIGPALGGFLAQPAEKYPNL  203 (477)
Q Consensus       126 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~~~~~~~~~~  203 (477)
                      .+.....+|.|..+..-+++|+..+..+.+ .+|+++..||+-|..+.++.+. ..++|-.+|.++||.+.+       .
T Consensus       450 f~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~-------~  522 (618)
T KOG3762|consen  450 FLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVE-------R  522 (618)
T ss_pred             HHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhe-------e
Confidence            999999999999999999999999988877 9999999999999999997755 467899999999999998       5


Q ss_pred             ccccccc
Q 011783          204 FSSESLF  210 (477)
Q Consensus       204 ~~~~~~~  210 (477)
                      |+-+..|
T Consensus       523 fg~~ttf  529 (618)
T KOG3762|consen  523 FGARTTF  529 (618)
T ss_pred             ehhHHHH
Confidence            6666555

>TIGR00788 fbt folate/biopterin transporter

Probab=98.62  E-value=7e-08  Score=93.89  Aligned_cols=123  Identities=7%  Similarity=-0.048  Sum_probs=105.5

Q ss_pred             HHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhh----------hhHHHH
Q 011783           69 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS----------VNFWMA  138 (477)
Q Consensus        69 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~----------~~~~~l  138 (477)
                      +++|.++.+      .|++.....++..++....+++.+|++.|+++.++.++.+++.......          ++.+..
T Consensus       281 ~~lG~s~~~------~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~  354 (468)
T TIGR00788       281 QCLPGGPSF------SGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFV  354 (468)
T ss_pred             ccCCCCcch------hhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeee
Confidence            568999999      9999999999999999999999999999999999999999887654311          333445


Q ss_pred             HHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhcc
Q 011783          139 VLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (477)
Q Consensus       139 ~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  197 (477)
                      ...-++.+++.+..... ..++.+..|+++++...++.+...++|..+++.+++.+.+..
T Consensus       355 ~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~  414 (468)
T TIGR00788       355 LGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETI  414 (468)
T ss_pred             eehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            55667888887775554 999999999999999999999999999999999999998843

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.60  E-value=1e-06  Score=87.62  Aligned_cols=138  Identities=17%  Similarity=0.127  Sum_probs=116.1

Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh
Q 011783          309 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS  388 (477)
Q Consensus       309 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (477)
                      ...+.....+..++..++..+|.+ +.|.++||+|||+++..+..+..++....++..+..      .+.+.=++.|++.
T Consensus       113 ~c~~~~~~~~~~s~~~~G~~vG~~-i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~------~~~~~Rfl~G~~~  185 (521)
T KOG0255|consen  113 VCDSSTLVALGQSLFFLGVLVGSL-IFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYW------MFLIFRFLSGFFG  185 (521)
T ss_pred             eeCcHhHHHHHHHHHHHHHHHHHh-hheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHH------HHHHHHHHHHhhc
Confidence            556677788888888899999988 889999999999999999999998887777766533      5556666677888


Q ss_pred             HHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHH
Q 011783          389 VSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM  466 (477)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  466 (477)
                      .+.......+..|.++++.|+.+..+ ......++.+++...+++..            +|++.+++..+...+..+.
T Consensus       186 ~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~------------~Wr~~~~~~~~~~~~~~~~  250 (521)
T KOG0255|consen  186 SGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR------------DWRWLFWIISIPSGLFLLL  250 (521)
T ss_pred             cchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh------------hHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999 88888888899998888876            5788888888777776665

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.59  E-value=2e-06  Score=68.94  Aligned_cols=107  Identities=21%  Similarity=0.191  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhcccc
Q 011783           88 GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE  166 (477)
Q Consensus        88 ~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~  166 (477)
                      .++......+.+++.+.+.+++|.|+.++++.+.+.+-.... +-++.+.++.+-++.|++.+..+++ ..++.+..+++
T Consensus        43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~  121 (156)
T PF05978_consen   43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEE  121 (156)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHH
Confidence            455566677888889999999999999999999998666554 4567889999999999999999998 89999999999


Q ss_pred             chhhHHHHHHHHhHHHHHHHHhHHHHhhh
Q 011783          167 HQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (477)
Q Consensus       167 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (477)
                      +|++..++.......+.++|.++.-.+..
T Consensus       122 ~~~~~~~ifw~i~~~s~i~G~~~~~~~~~  150 (156)
T PF05978_consen  122 TIGRNTGIFWAIFQSSLIFGNLFLFFIFQ  150 (156)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999998988888888877666543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=98.55  E-value=0.00023  Score=70.23  Aligned_cols=162  Identities=13%  Similarity=0.061  Sum_probs=117.5

Q ss_pred             CCchhHHHHHHHHHHHhhhch-hchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhc-CCchh
Q 011783           37 GLPITELFSIWIIVLCTALPI-SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPV  114 (477)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-Grr~~  114 (477)
                      ...|+....+.....+..+.. +.....+.++.+++|.+...      +.-..+.+.-......+..+.++|-| ||-+.
T Consensus        33 ~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~------aa~~v~~f~G~~~~~~l~g~~laD~f~gry~t  106 (571)
T KOG1237|consen   33 TGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGG------AANNVNAFGGTQFLLPLLGAFLADSFLGRYFT  106 (571)
T ss_pred             echhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHH------HHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHH
Confidence            334454444444445555544 34467778899999998877      78888888888888899999999986 99999


Q ss_pred             hHHHHHHHHHHHHHHHhhhh-------------------------HHHHHHHHHHhhhcccchhhH-HHHhhhhcc---c
Q 011783          115 IIMGTASVVIFNTLFGLSVN-------------------------FWMAVLTRFLLGSLNGLLGPI-KAYACEIFR---E  165 (477)
Q Consensus       115 ~~~~~~~~~i~~~~~~~~~~-------------------------~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~---~  165 (477)
                      +.++.++..++.++...+..                         ...++.+.-+..+|.|..-|+ .+.-+|-++   +
T Consensus       107 I~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~  186 (571)
T KOG1237|consen  107 INIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDP  186 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCc
Confidence            99999998888655544221                         235666667778899998888 888899998   2


Q ss_pred             -c--chhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCcccc
Q 011783          166 -E--HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFS  205 (477)
Q Consensus       166 -~--~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~  205 (477)
                       +  .+...+.++....++|..++..+-.++-+ ..+|.+.|+
T Consensus       187 ~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~-~~~w~lgf~  228 (571)
T KOG1237|consen  187 VEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQD-NVGWKLGFG  228 (571)
T ss_pred             chhhCcccchhHHHHHHHHHHHHHHHHHHhhhh-cccceeecc
Confidence             2  22367788888999999998888777765 344544444

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.50  E-value=5.5e-07  Score=62.62  Aligned_cols=71  Identities=23%  Similarity=0.529  Sum_probs=61.6

Q ss_pred             HHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHH
Q 011783           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (477)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~  122 (477)
                      +-...++.+...+...|.+|.+.++.|.+..+      +|.+.++..+...++++++|.++||+++++.++.....+
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~------iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLKQLGLSPSQ------IGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            34455666777788899999999999999999      999999999999999999999999999999877765543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.46  E-value=3.2e-06  Score=77.52  Aligned_cols=142  Identities=20%  Similarity=0.187  Sum_probs=118.3

Q ss_pred             HHHHhhhchhchHhHHH-HHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhh-hcCCchhhHHHHHHHHHHH
Q 011783           49 IVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD-RYGRKPVIIMGTASVVIFN  126 (477)
Q Consensus        49 ~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~D-r~Grr~~~~~~~~~~~i~~  126 (477)
                      ..++..++..+--.++. +=.+-||++..|      ...+......|..++-...|++.. |.++|+.-.+++....++.
T Consensus       216 fl~l~t~a~~~QD~iLEPygg~Vfgmsv~e------TT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f  289 (403)
T PF03209_consen  216 FLFLGTLAFFMQDVILEPYGGEVFGMSVGE------TTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAF  289 (403)
T ss_pred             HHHHHHHHHHhhHHHcCCchhHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Confidence            33444455555556664 445669999999      899999999999999999999888 6788888888888887776


Q ss_pred             HHHHh---hhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhc
Q 011783          127 TLFGL---SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (477)
Q Consensus       127 ~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  196 (477)
                      .+..+   ..+.+.+...-++.|++.|.+... .+...|..++++.|..+|.+.....++..+|-.++|.+.+.
T Consensus       290 ~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~  363 (403)
T PF03209_consen  290 ALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL  363 (403)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65444   457888999999999999999988 99999999999999999999999999999999999998874

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=98.41  E-value=3.5e-05  Score=72.18  Aligned_cols=381  Identities=12%  Similarity=0.044  Sum_probs=188.2

Q ss_pred             HHHHHHHHHHhhhchhchHhHHHHHHHH--hcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhh-----hcCCchhh
Q 011783           43 LFSIWIIVLCTALPISSLFPFLYFMIKD--FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD-----RYGRKPVI  115 (477)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~D-----r~Grr~~~  115 (477)
                      +.++.+.+++.+...+.....+|.+.++  -+.|.+|      .|...-+ ...+ -.-++|.++.|     |+||||.-
T Consensus         2 ~~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q------~~~fSla-~~Pf-SlKlLWaPiVDs~y~~~~GRRKSW   73 (544)
T PF13000_consen    2 IALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQ------QAIFSLA-SYPF-SLKLLWAPIVDSVYSKRIGRRKSW   73 (544)
T ss_pred             eeHHHHHHHHcCcccccccccchhhhccccCCCChhH------heeeeee-echh-HHHHhhhhhhhhhcccccCCcchh
Confidence            3456777888888888877788988888  7788777      4443211 1111 12356666666     89999985


Q ss_pred             HHH-HHHHHHHHHHHHhhh------------------------hHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchh
Q 011783          116 IMG-TASVVIFNTLFGLSV------------------------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQA  169 (477)
Q Consensus       116 ~~~-~~~~~i~~~~~~~~~------------------------~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~  169 (477)
                      ++- -.+.++..+..+..-                        +...+...-++.-+-.+..-.+ -.+.-....+++++
T Consensus        74 iiP~Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~  153 (544)
T PF13000_consen   74 IIPIQYLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVG  153 (544)
T ss_pred             hhHHHHHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcc
Confidence            553 334444333332211                        0112222222333333443333 45555556678877


Q ss_pred             hHHHHHHHHhHHHHHHHHhHHHHhhhc--ccc-CCcc---ccccc--ccc-cccch-HHHHHHHHHhhccccccCCCCCC
Q 011783          170 LGLSTVSTAWGIGLIIGPALGGFLAQP--AEK-YPNL---FSSES--LFG-KFPYF-LPCLCISLFAFGETLHRHNDDDD  239 (477)
Q Consensus       170 ~~~~~~~~~~~~g~~~g~~~~~~l~~~--~~~-~~~~---~~~~~--~~~-~~~~~-~~~~~~~~~~l~~~~~~~~~~~~  239 (477)
                      .+..-...+.+.|..++..+--.+.+.  .+. +|..   .|.-.  .|. .+... ++......++-.|.+.....++.
T Consensus       154 ~ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~  233 (544)
T PF13000_consen  154 YASTCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKI  233 (544)
T ss_pred             hHHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCccc
Confidence            776666666666665554443222211  000 1110   00000  000 00001 11111111222233221111100


Q ss_pred             c----cchhhhhhhhhhccch----hhc---ccCCchhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCc
Q 011783          240 S----CDVSYDALESASAEVK----EEE---GREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGG  308 (477)
Q Consensus       240 ~----~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (477)
                      +    .+...++...+.++.+    ++.   .+.-....+++|-|++..+++.....-..+.+-.....+=+.      +
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLl------E  307 (544)
T PF13000_consen  234 EPINKSDGKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLL------E  307 (544)
T ss_pred             cccccccccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHH------H
Confidence            0    0000000000000000    000   111123445677888887777766655444444433333222      2


Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------------------------hhHHHHHHHHHHHHHHH-
Q 011783          309 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP--------------------------IMVARIAGVLTIPLLTS-  361 (477)
Q Consensus       309 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------------~~~~~~~~~~~~~~~~~-  361 (477)
                      .|++-+..+++..+..-..++...+++.|..++-..                          -+....++..-.+..+. 
T Consensus       308 kG~~KE~LAl~~li~~P~qii~~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~  387 (544)
T PF13000_consen  308 KGLSKEDLALLVLIDFPFQIILPYYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLA  387 (544)
T ss_pred             cCCCHHHhHHHHHHhhhHHHHHHHHhhhhhcCCCccccccccccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHH
Confidence            788888877776655555555555344443332110                          01111222211111111 


Q ss_pred             ---HHHHHHh--hhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHH
Q 011783          362 ---YPYIAML--SGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSW  436 (477)
Q Consensus       362 ---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  436 (477)
                         ....+..  .....+..++....+..+.....+....+.-+++.+|..-|+.+.+.|++.++|+---..+.=++.|.
T Consensus       388 ~~iV~~fP~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~  467 (544)
T PF13000_consen  388 QLIVYFFPSDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY  467 (544)
T ss_pred             HheEEeCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence               1111111  12234556666677778888888888899999999999999999999999999998777777777776


Q ss_pred             h
Q 011783          437 A  437 (477)
Q Consensus       437 ~  437 (477)
                      .
T Consensus       468 f  468 (544)
T PF13000_consen  468 F  468 (544)
T ss_pred             c
Confidence            5

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.37  E-value=1.7e-06  Score=79.68  Aligned_cols=127  Identities=13%  Similarity=0.004  Sum_probs=98.3

Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhhh
Q 011783          310 NYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGF-GLAFLLNCASVVKNLLS  388 (477)
Q Consensus       310 g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  388 (477)
                      ++++...+.+.....++.+++++ +.|++.||+|||+++-..+++++++-+..........+ .....+.+.=++.|++.
T Consensus        80 ~~ps~i~~~Vn~~A~vGti~GQl-~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGI  158 (538)
T KOG0252|consen   80 HYPSGVLALVNAAALVGTIFGQL-FFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGI  158 (538)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHH-HHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccc
Confidence            36677788888999999999999 99999999999999999888888887655444433333 23334444445668888


Q ss_pred             HHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHh
Q 011783          389 VSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWA  437 (477)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  437 (477)
                      ++-+|...+..+|....+.||+-.+....++..|...|..++-.+...+
T Consensus       159 GGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~f  207 (538)
T KOG0252|consen  159 GGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIF  207 (538)
T ss_pred             cCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHH
Confidence            9999999999999999999999999888887777766666555555444

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.34  E-value=1.4e-05  Score=70.95  Aligned_cols=358  Identities=13%  Similarity=0.030  Sum_probs=196.3

Q ss_pred             HHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhHHHHhhhhccccchhhH
Q 011783           92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALG  171 (477)
Q Consensus        92 ~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~  171 (477)
                      .-.+.+.-.+.=.+.|..-.|++++.-.+.......+..+.++.+.+=+.-++.|...+.-..-++++-+.++++++.++
T Consensus        52 TYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEIAYysYIYs~Vd~~~Yqrv  131 (433)
T KOG3810|consen   52 TYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEIAYYSYIYSKVDPEMYKRV  131 (433)
T ss_pred             hHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHHhhhheeeeecCHHHHHHH
Confidence            33445555666678999999999999988888888899999999999999998888766655558899999999999999


Q ss_pred             HHHHHHHhHHHHHHHHhHHHHhhhccccCCcccccccccccccch-HHHHHHHHHhhccccccCCCCCCccchhhhhhhh
Q 011783          172 LSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYF-LPCLCISLFAFGETLHRHNDDDDSCDVSYDALES  250 (477)
Q Consensus       172 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  250 (477)
                      .+...++.-.|-..|..++-.+....  |-..+....    .... ..+.....+++|..++..-.++++.+....+.++
T Consensus       132 t~y~RaA~L~g~~~g~vlaQlLvs~~--~~sy~~LN~----ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~v~~~e~  205 (433)
T KOG3810|consen  132 TGYCRAAFLVGKFVGSVLAQLLVSLE--TLSYTTLNY----ISLAEVTIAVLLALFLPRVKRSLYFHRLEDKISVGDLEE  205 (433)
T ss_pred             HHHhHHHHHHHhHHHhHHHHHHhhhc--ccchhhhch----hhHHHHHHHHHHHhhCCCCchhhhhhcccccceeccchh
Confidence            99999999999999999988887622  111111111    1111 1222333345554332111111111110011111


Q ss_pred             hhccch--h----hcccCCchhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHH
Q 011783          251 ASAEVK--E----EEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITG  324 (477)
Q Consensus       251 ~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~  324 (477)
                      ...+.+  +    ..........+..+||.+..-.+-+.+..+......++....-....    -+-...-.|..-++..
T Consensus       206 ~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~----~~~~~vyNG~veAv~t  281 (433)
T KOG3810|consen  206 MNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVA----PNPANVYNGAVEAVST  281 (433)
T ss_pred             cCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhC----CCchhhhcCHHHHHHH
Confidence            111000  0    00111123444556776665555555555444444433332222110    1112223456666666


Q ss_pred             HHHHHHHHHHHHHHHHhhcchhHHH--HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhc
Q 011783          325 FSLLVFQLSLYPFLERILGPIMVAR--IAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRA  402 (477)
Q Consensus       325 ~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (477)
                      +.+.+..+ ..|.+.-++.|..-+.  .+.+..+...+.+.....     .| +......+.........+.....+++.
T Consensus       282 lLGa~~~~-~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~-----Iw-~~Ya~yvlfr~~y~l~itiA~~~iA~n  354 (433)
T KOG3810|consen  282 LLGAIAAL-AAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQH-----IW-VCYAGYVLFRVIYQLTITIATFQIARN  354 (433)
T ss_pred             HHHHHHHH-HHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccc-----ee-hhhhhHHHHHhhHhhhhhHHHHHHHHh
Confidence            77777777 7777766555553333  333332222222222221     22 333333333333344445555556666


Q ss_pred             CCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccc-cCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          403 VDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDA-SFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       403 ~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      .+.|.-|...|+..++.-+-+.+-..+   +.|..+...+. ...--|..-|++.+++.+++..+...
T Consensus       355 L~~e~~gLvFGiNTFvAl~lQsilT~i---Vvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~  419 (433)
T KOG3810|consen  355 LSSELFGLVFGINTFVALILQSILTLI---VVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYL  419 (433)
T ss_pred             hhhhhheeeeehHHHHHHHHHHhheEE---EEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHH
Confidence            788899999999877665555444443   33422211111 11113455677788888887665444

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.27  E-value=0.002  Score=62.23  Aligned_cols=297  Identities=13%  Similarity=0.129  Sum_probs=153.8

Q ss_pred             CchhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcc---cccchhhhhhhHHHHHHHHH-HHHHHhhhhhhhhhhcCCch
Q 011783           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQI---AKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGRKP  113 (477)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~~~~~~g~~~s~~~~-~~~~~~~~~G~l~Dr~Grr~  113 (477)
                      ..++++..+.+..|+..+.++..-    .+.+.+=+   +++.      +..+=....+ ...+......+++||++|.+
T Consensus        21 ~E~~k~~~l~~m~f~i~f~y~~lR----~~KD~lvvt~~gae~------I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~   90 (491)
T PF03219_consen   21 SELKKFLPLALMFFFILFNYTILR----DLKDTLVVTAQGAEV------IPFLKVWGVLPVAILFTILYSKLSNRLSREK   90 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HhcCeEEEecCChhH------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            335566666666666555544332    22222222   2222      4555444444 34555778999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHhh--h-----------------------------hHHHHHHHHHHhhhcccc-hhhH-HHHhh
Q 011783          114 VIIMGTASVVIFNTLFGLS--V-----------------------------NFWMAVLTRFLLGSLNGL-LGPI-KAYAC  160 (477)
Q Consensus       114 ~~~~~~~~~~i~~~~~~~~--~-----------------------------~~~~l~~~r~l~G~~~g~-~~~~-~~~i~  160 (477)
                      ++-+....+.....++++.  |                             +.|.+.+.....-+-+.. .... ..+..
T Consensus        91 lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN  170 (491)
T PF03219_consen   91 LFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFAN  170 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9887777776666655542  1                             123333333333343333 3335 78889


Q ss_pred             hhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhh-ccccCCc-ccccccccccccchHHHHH-HHHHhhc-cccccCCC
Q 011783          161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ-PAEKYPN-LFSSESLFGKFPYFLPCLC-ISLFAFG-ETLHRHND  236 (477)
Q Consensus       161 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~l~-~~~~~~~~  236 (477)
                      |.++.+|-.+..++++.+.++|.+++..+..++.+ .....+. .-.|.... .....+.... ..+..+. ...+....
T Consensus       171 ~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~v~~~g~~i~~~~~~~~~~vl~  249 (491)
T PF03219_consen  171 EITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSL-NSLMGIVLILGIVIILLYRYMNKNVLT  249 (491)
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            99999999999999999999999999888888876 1110000 11121111 0001111111 1111111 00000000


Q ss_pred             CCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhh
Q 011783          237 DDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMV  316 (477)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  316 (477)
                      +++..+.      ...++.++.+....++.+.++|+|.+..+.+...++..........+-......+. +...++. -.
T Consensus       250 ~~~~~~~------~~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~-~~~~ysa-fm  321 (491)
T PF03219_consen  250 DPRFYPS------AKKKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYP-DPNDYSA-FM  321 (491)
T ss_pred             ccccchh------hhcccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CchHHHH-HH
Confidence            0000000      00000011122334567788899988887777776655544444333333222110 1111111 23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 011783          317 GEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  354 (477)
Q Consensus       317 g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  354 (477)
                      |-.....++..++..+ +++.+.+|+|-+....+.-++
T Consensus       322 G~~~~~tGivtii~~~-l~~~iir~~GW~~~AlitPiv  358 (491)
T PF03219_consen  322 GKFSSWTGIVTIIMMF-LSSNIIRRFGWRTAALITPIV  358 (491)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHhHHH
Confidence            5555666777777775 888999998876665554333

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.25  E-value=3.8e-09  Score=103.04  Aligned_cols=132  Identities=20%  Similarity=0.302  Sum_probs=87.6

Q ss_pred             chhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHH--h--
Q 011783           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG--L--  131 (477)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~--~--  131 (477)
                      +........+.+.++.+.+...     ....+..   +...++.+....+.||+|||++++.+..+.+++.+..+  .  
T Consensus       268 g~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~  339 (451)
T PF00083_consen  268 GINFIFYYSPSIFENAGISNSF-----LATLILG---LVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFL  339 (451)
T ss_pred             cccccccccccccccccccccc-----ccccccc---ccccccccccccccccccccccccccccccccccccccccccc
Confidence            3344445556777777776652     0233222   33455666777999999999999999998888877664  1  


Q ss_pred             -hhh-----HHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhh
Q 011783          132 -SVN-----FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (477)
Q Consensus       132 -~~~-----~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (477)
                       .++     ...+...............+. ..+.+|.+|.+.|.++.++......++..+++.+...+.+
T Consensus       340 ~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~  410 (451)
T PF00083_consen  340 GVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFN  410 (451)
T ss_pred             ccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence             111     122222221111222234455 6888999999999999999999888988888888777765

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.23  E-value=3.4e-05  Score=67.20  Aligned_cols=127  Identities=17%  Similarity=0.047  Sum_probs=89.9

Q ss_pred             cCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHH
Q 011783          305 KLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSG--FGLAFLLNCASV  382 (477)
Q Consensus       305 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  382 (477)
                      ..+.+|+|..+...+-....++..++ + ..|.+.|+.|++..+.+|.+...++...+.......-  ...|. +.+...
T Consensus        28 Lk~~l~~sq~~l~~l~~~~~~G~~~G-~-~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~-~~~~~~  104 (250)
T PF06813_consen   28 LKSRLGYSQSQLNTLSTAGDIGSYFG-I-LAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWL-MCLFLF  104 (250)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHhhcc-H-HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHH-HHHHHH
Confidence            34559999999999998888888775 5 7899999999999999999999999876655544322  22232 233333


Q ss_pred             HHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHH
Q 011783          383 VKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFS  435 (477)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  435 (477)
                      +.+.+.............+.+| ++||++.|+.-....+++++-..+...+++
T Consensus       105 l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~  156 (250)
T PF06813_consen  105 LGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFG  156 (250)
T ss_pred             HHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence            3333334444454455556788 579999999999988888877776555543

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.20  E-value=0.00063  Score=61.72  Aligned_cols=145  Identities=12%  Similarity=0.059  Sum_probs=95.8

Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh
Q 011783          309 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS  388 (477)
Q Consensus       309 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (477)
                      +|++..+++.++........+.+. +.|.+.||+|||+..+...++..+.++.-.. +      ....+.+.=++.|+..
T Consensus        64 yg~~~~qIa~Lf~~Gf~Ss~i~g~-~~G~laD~~Grk~~cl~~cily~~scl~k~~-~------~~~~L~~GRvlgGiaT  135 (354)
T PF05631_consen   64 YGFSEHQIAILFVAGFASSAIFGT-FVGSLADRYGRKKACLLFCILYSLSCLTKHS-S------NYPVLLLGRVLGGIAT  135 (354)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-c------ccHHHHHHHHHHHHHH
Confidence            899999999999998888888888 8899999999999988888877777753221 1      1224555556666666


Q ss_pred             HHHHhHHHHHH-h----hcCCcchhhHHhHHHHHH-HHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHH
Q 011783          389 VSIITGLFILQ-N----RAVDQDQRGAANGIAMTG-MSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAI  462 (477)
Q Consensus       389 ~~~~~~~~~~~-~----~~~~~~~~g~~~g~~~~~-~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  462 (477)
                      ...+...-+.. .    +-+|++..+...+..... +.+-++.+..++..+.++.+.        |...+|.....+.++
T Consensus       136 SLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~--------g~vaPF~~a~~~l~~  207 (354)
T PF05631_consen  136 SLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGF--------GPVAPFDAAIVLLAV  207 (354)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCC--------CCcchHHHHHHHHHH
Confidence            66666665543 2    245666666655554422 333344444444444444311        346788888888888


Q ss_pred             HHHHHhh
Q 011783          463 GVLMTFK  469 (477)
Q Consensus       463 ~~~~~~~  469 (477)
                      +.+++..
T Consensus       208 ~~~~I~~  214 (354)
T PF05631_consen  208 AAVLILK  214 (354)
T ss_pred             HHHHHHh
Confidence            8777654

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.18  E-value=0.00013  Score=70.10  Aligned_cols=132  Identities=18%  Similarity=0.191  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhc
Q 011783          323 TGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRA  402 (477)
Q Consensus       323 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (477)
                      .++...+.+. ..|.++||+|||..+........+..+...+..      .| .+....+  .++.........+++++.
T Consensus        71 ~~~~~~i~s~-~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~------~~-~~~~~~l--~g~~~~~~s~~~a~vadi  140 (463)
T KOG2816|consen   71 AGLLTLISSP-LIGALSDRYGRKVVLLLPLFGTILPALCLLFQG------YW-FFLLLGL--SGGFSAIFSVGFAYVADI  140 (463)
T ss_pred             hHHHHHHHHh-hhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH------HH-Hhhhccc--ccchhhhhhhhhhheeec
Confidence            3666777777 789999999999999988887777766655544      12 2222222  234456667778899999


Q ss_pred             CCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhhhhhhcc
Q 011783          403 VDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQR  475 (477)
Q Consensus       403 ~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (477)
                      ...+.|....|+.+.....+..++|.+.+.+.+..          |+..+|.+..+..+++.+.... .+||+
T Consensus       141 s~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~----------~~a~~f~ia~~~~~~~~~y~~~-~l~Es  202 (463)
T KOG2816|consen  141 SSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFL----------GIALVFLIAAASGILSLLYMLL-FLPES  202 (463)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc----------CchHHHHHHHHHHHHHHHHHhh-ccccc
Confidence            99999999999999999999999999999999887          8888999998888888777665 56664

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.12  E-value=0.00014  Score=73.05  Aligned_cols=170  Identities=9%  Similarity=-0.032  Sum_probs=114.9

Q ss_pred             hhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 011783          291 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-LGPIMVARIAGVLTIPLLTSYPYIAMLS  369 (477)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (477)
                      +....+..|+...     +|++...+..+........-+... +++++.|+ +|+++.+..+.++..++..++.......
T Consensus         5 Gm~aiLvlYl~~~-----lg~~~~~A~~i~~~f~~l~yl~pi-lGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~   78 (654)
T TIGR00926         5 GMRTILVLYFLNF-----LGFSESTSTVLFHTFTYLCYLTPL-IGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPS   78 (654)
T ss_pred             ecHHHHHHHHHHH-----cCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcc
Confidence            3444555555543     788888777776666655556555 77787776 6899999999988888877665532211


Q ss_pred             h--hhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcc---hhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcccc
Q 011783          370 G--FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQD---QRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDAS  444 (477)
Q Consensus       370 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~  444 (477)
                      .  .......+....+..++.++.-|...+...+.++++   .+-+...++....++|+.+++.+.+++.+........ 
T Consensus        79 ~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~-  157 (654)
T TIGR00926        79 SGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQ-  157 (654)
T ss_pred             cccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC-
Confidence            1  112223344455556777788888888888877654   4667788888888999999999988887543211000 


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          445 FLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       445 ~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                        .+|...|.+.+++.+++.++...
T Consensus       158 --~~~~~aF~i~~i~m~ia~lvf~~  180 (654)
T TIGR00926       158 --DCYPLAFGVPAILMILALIVFMA  180 (654)
T ss_pred             --cchHHHHHHHHHHHHHHHHHHHH
Confidence              16888999988888888776654

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.02  E-value=7.9e-05  Score=68.94  Aligned_cols=127  Identities=14%  Similarity=-0.061  Sum_probs=87.0

Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHHHHHHHHhh
Q 011783          309 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAF--LLNCASVVKNL  386 (477)
Q Consensus       309 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  386 (477)
                      || +...+-+...++.+..+...+ .+-|+.|++|-|..+.++....+++..+=.......-.....  +......+.+.
T Consensus        75 Yg-s~~~~~wlsmIym~v~vp~gf-~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~  152 (480)
T KOG2563|consen   75 YG-SSSAADWLSMIYMVVSVPFGF-AAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAA  152 (480)
T ss_pred             hc-chHHHHHHHHHHHHHHHHHhh-HHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHH
Confidence            56 566666777788888888877 889999999999999999998888876544433321111111  22233333223


Q ss_pred             hhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHh
Q 011783          387 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWA  437 (477)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  437 (477)
                      ........-.-.....+|+++|+++..+..+.+.+|.+++..+...+..+.
T Consensus       153 Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~  203 (480)
T KOG2563|consen  153 AQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS  203 (480)
T ss_pred             hhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence            332222222234455789999999999999999999999999888888766

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=97.89  E-value=0.0039  Score=57.80  Aligned_cols=122  Identities=14%  Similarity=0.129  Sum_probs=63.5

Q ss_pred             hHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHH
Q 011783           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (477)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~  120 (477)
                      ...++.++..+-......+.....+++.+++...+.+   ............+...+....--.+.-|. |+++.....+
T Consensus        18 ~v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~~---~~F~~~~~~~a~i~~ll~~~~n~~~~~~~-~~~~~~~l~~   93 (406)
T KOG1479|consen   18 LVYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHNS---KNFTSSYTLAAQIPLLLFNLLNAFLNTRL-RTRVGYLLSL   93 (406)
T ss_pred             cHHHHHHHHhcccccchHhhhccHHHHHhhcCCCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            3444555555666667777888888888887655443   11133334444444555555555555562 2222111111


Q ss_pred             HHHHHHHHHHhh---------hhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccc
Q 011783          121 SVVIFNTLFGLS---------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEH  167 (477)
Q Consensus       121 ~~~i~~~~~~~~---------~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~  167 (477)
                      ...+..+.+.++         ..+...++.-.+.+.+.|...-. ....++ +|+|.
T Consensus        94 ~~il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~y  149 (406)
T KOG1479|consen   94 IAILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEY  149 (406)
T ss_pred             HHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHH
Confidence            111112222221         24566667777788888877666 555555 45444

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.87  E-value=0.00021  Score=49.73  Aligned_cols=70  Identities=17%  Similarity=0.220  Sum_probs=57.3

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 011783          278 SIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  354 (477)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  354 (477)
                      .-..+++++....+...+++.|..+      .|+|+.++|++.++..+..+++.+ +.+++.||.++++........
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~~------~Gl~~~~iGil~~i~~~~~~~~~p-l~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLKQ------LGLSPSQIGILSAIRPLIRFLAPP-LWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhh------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCccHHHHHHHHH
Confidence            3456666666777777778877765      799999999999999999999999 899999999988877665543

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.85  E-value=0.028  Score=53.26  Aligned_cols=299  Identities=12%  Similarity=0.135  Sum_probs=158.6

Q ss_pred             chhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHH-HHHHHhhhhhhhhhhcCCchhhHH
Q 011783           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGRKPVIIM  117 (477)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~-~~~~~~~~~G~l~Dr~Grr~~~~~  117 (477)
                      .++.+..+.+..++..+.+    ..+-.+.+.+-++....+.   +.++-+...+ +..+..++.+++.+++.|.+++-+
T Consensus        25 E~~kflpl~Ll~f~I~~ny----~~lR~lKDslvv~~~gae~---I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~   97 (509)
T COG3202          25 ELKKFLPLALLFFCILFNY----NLLRSLKDSLVVTRQGAES---ISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYI   97 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHhhhheEeecCcchh---hHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHH
Confidence            3455555555555544443    3444556666655332111   7777777777 677888999999999999999888


Q ss_pred             HHHHHHHHHHHHHhhh---------h-----------------------HHHHHHHHHHhhhcccc-hhhH-HHHhhhhc
Q 011783          118 GTASVVIFNTLFGLSV---------N-----------------------FWMAVLTRFLLGSLNGL-LGPI-KAYACEIF  163 (477)
Q Consensus       118 ~~~~~~i~~~~~~~~~---------~-----------------------~~~l~~~r~l~G~~~g~-~~~~-~~~i~~~~  163 (477)
                      -+..+....+++++.-         +                       .|...+...+.-+-... ..-. .....|.+
T Consensus        98 ~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeit  177 (509)
T COG3202          98 ILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEIT  177 (509)
T ss_pred             HHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            8888877777776531         1                       12333333333332233 2224 66788999


Q ss_pred             cccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCcccccccccccccchHHHHH-HHHHhhc---cccccCCCCCC
Q 011783          164 REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLC-ISLFAFG---ETLHRHNDDDD  239 (477)
Q Consensus       164 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~---~~~~~~~~~~~  239 (477)
                      ..+|-.|.+++++...+++..++..+..++.++...+...+-- ..+ ...+.+.... .....+.   |....+++.. 
T Consensus       178 t~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~-~~~-~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f-  254 (509)
T COG3202         178 TIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKD-LLL-QILFIVIVILGIIAILLYRYINRNVLTDPLF-  254 (509)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHhhcccCcch-
Confidence            9999999999999999999999988888887633221111100 000 0001111111 1111111   1100000000 


Q ss_pred             ccchhhhhhhhhhccchhhcccCCchhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccch---hhh
Q 011783          240 SCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYST---QMV  316 (477)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~  316 (477)
                      ..+      ....++.++.+....++.+.+.|+|.+....+...+++.....+..   .|-...  .+.+..+.   .-.
T Consensus       255 ~~~------~~~kk~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~---~wKs~i--k~~~~~~~~~~~f~  323 (509)
T COG3202         255 YLR------AKKKKKKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEG---VWKSGI--KELYPTTNEYTAFM  323 (509)
T ss_pred             hHH------HhcccccccccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH---HHHHhH--HHhcCChhHHHHHH
Confidence            000      0000000111222334667788888888777666666544333322   222211  11111111   223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 011783          317 GEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPL  358 (477)
Q Consensus       317 g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  358 (477)
                      |.+....++..++.....++.+.+|.|=.....+.-++..+.
T Consensus       324 ~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPiv~lit  365 (509)
T COG3202         324 GRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLVMLIT  365 (509)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            444555666655555657888888888666555554444444

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=97.80  E-value=0.0074  Score=57.97  Aligned_cols=51  Identities=16%  Similarity=0.055  Sum_probs=39.2

Q ss_pred             HHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhH
Q 011783          379 CASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAG  429 (477)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~  429 (477)
                      +..++.++..+-.......+..+.+++++|..+..+....-.+|-.+|..+
T Consensus       377 ~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       377 ILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             HHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445667777777777788888999999998888888888888877765

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.80  E-value=0.0005  Score=65.42  Aligned_cols=158  Identities=15%  Similarity=0.114  Sum_probs=110.1

Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 011783          309 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG-PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLL  387 (477)
Q Consensus       309 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (477)
                      .+-+.+..|+..+...++..++++ ..++...|.+ -|+.+..+.+++.++.+++......+....+ +++++=++.|+ 
T Consensus        66 ~~A~~~ffG~viaa~slg~~i~~l-iF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y-~mL~~R~l~Gv-  142 (488)
T KOG2325|consen   66 PTATATFFGLVIAASSLGHAIFSL-IFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKY-LMLVARILTGV-  142 (488)
T ss_pred             CCCCcchhhHHHHHHHHHHHhcch-hhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHH-HHHHHHHHcCc-
Confidence            566777889999999999999999 5666666655 4888899999999998888555544432222 33333343333 


Q ss_pred             hHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhh---ccccCCCCchHHHHHHHHHHHHHH
Q 011783          388 SVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKR---LDASFLPGSQMVFFVLNVVEAIGV  464 (477)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~  464 (477)
                      +.+.......++++..-.++|.++++..+....+|.++||.+...+.......   ..+..++-|..+-++++++.++..
T Consensus       143 g~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~  222 (488)
T KOG2325|consen  143 GVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYI  222 (488)
T ss_pred             CcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHH
Confidence            34556677788888777788999999998888888888888766554433111   111233457778888888888887


Q ss_pred             HHHhh
Q 011783          465 LMTFK  469 (477)
Q Consensus       465 ~~~~~  469 (477)
                      ++...
T Consensus       223 v~i~~  227 (488)
T KOG2325|consen  223 VIILF  227 (488)
T ss_pred             HHHHh
Confidence            77665

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.57  E-value=0.012  Score=47.25  Aligned_cols=107  Identities=18%  Similarity=0.062  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHh
Q 011783          321 AITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQN  400 (477)
Q Consensus       321 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (477)
                      ++......+..+ +.+.+.+++|.|+.+.++.+...+-.+.....       .+..++....+.|++.+..+.....++.
T Consensus        44 ai~Y~~~~~s~l-~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~-------~~~~l~~~s~l~G~~~a~lW~aqg~ylt  115 (156)
T PF05978_consen   44 AILYGSFAISCL-FAPSIVNKLGPKWSMILGSLGYAIYIASFFYP-------NSYTLYPASALLGFGAALLWTAQGTYLT  115 (156)
T ss_pred             HHHHHHHHHHHH-hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHhhhhHHhhHhhhHHHH
Confidence            333444455555 67888999999999999988776655544322       1335666677778888999999889999


Q ss_pred             hcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHH
Q 011783          401 RAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFS  435 (477)
Q Consensus       401 ~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  435 (477)
                      +..+++.+++-.|+.-.+.+.+.++|..+.-.+..
T Consensus       116 ~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~  150 (156)
T PF05978_consen  116 SYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ  150 (156)
T ss_pred             HcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999888888888876555443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=97.53  E-value=0.0034  Score=54.12  Aligned_cols=245  Identities=9%  Similarity=-0.003  Sum_probs=104.8

Q ss_pred             cchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhh
Q 011783          166 EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSY  245 (477)
Q Consensus       166 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  245 (477)
                      |+|+........+.++|.++....--.-.+....-  .-.|+.++ .....+..+.+++..+.++.-+...++++.++  
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~--~~~W~~I~-si~~lL~~IpLIly~ifGk~fd~~~~~~k~~k--   76 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIAL--TNNWQWIL-SIFILLIFIPLILYIIFGKNFDIYSPKEKQEK--   76 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHH--HHHHHHHH-HHHHHHHHHHHHHHHHhcccccccCccccccc--
Confidence            56777777777888888877644321110110101  11244443 11122223333333444443322222101000  


Q ss_pred             hhhhhhhccchhhcccCCchhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccc----hh----hhH
Q 011783          246 DALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYS----TQ----MVG  317 (477)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~----~~g  317 (477)
                                .+...+.+....+.+|++.-|...+.+..+......  ...+.+..........+.+    ..    ...
T Consensus        77 ----------~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wLv~~V~--p~t~~~~~~~~~~s~~ni~~~~~~~~~~~~~~  144 (267)
T PF07672_consen   77 ----------ENSTLSKKPSYKSILKEKETWKWILIYGIWLVVVVF--PFTPSWFNILIWISPANIKSVVSGGGFNWIIP  144 (267)
T ss_pred             ----------ccccccccchHHHHHccchHHHHHHHHHHHheeEEE--eccchhHhHhhhcCcccccccccccccchhhH
Confidence                      000222346788999999999888777765433211  1111111111001111111    11    112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH----HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHh
Q 011783          318 EVLAITGFSLLVFQLSLYPFLERILGPIMVARIA----GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIIT  393 (477)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (477)
                      ....+...+..++...++.|=..+.+||+.+...    .++..+..+. .......+........+..++.|.+.-+..+
T Consensus       145 ~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~-~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~  223 (267)
T PF07672_consen  145 IFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVV-VYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG  223 (267)
T ss_pred             HHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHH-HHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence            2233333333344342333333334566655432    2222222222 1111111222233455556666666666666


Q ss_pred             HHHHHHhh--cCCcchhhHHhHHHHHHHHHHHHHhhh
Q 011783          394 GLFILQNR--AVDQDQRGAANGIAMTGMSLFKAAGPA  428 (477)
Q Consensus       394 ~~~~~~~~--~~~~~~~g~~~g~~~~~~~~g~~~~~~  428 (477)
                      .......|  -.+|++.|...|+.-.++++.-.+.-.
T Consensus       224 ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~yTi~~I  260 (267)
T PF07672_consen  224 VILNLPHEYKGYNPKKIGIQFGLIWGFGYIFYTIYDI  260 (267)
T ss_pred             HHhcChhhhcCCCcceehhHHHHHHHHHHHHHHHHHH
Confidence            66665555  234566676666665555544444433

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=97.53  E-value=0.0018  Score=56.92  Aligned_cols=149  Identities=13%  Similarity=0.070  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHhhhchhchHhHHHHHHHHhcccccc---------hhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCch
Q 011783           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKRE---------EDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP  113 (477)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---------~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~  113 (477)
                      ....++..+++.+++-++..+..++.++-.-++..         +-.....|.+.-+-.+...+..+.+....||+---.
T Consensus        14 ~~~FwllGLcNN~~YVvmLSAA~DIl~~~~~~~~~~c~~h~~~r~c~~~stg~VLLaDilPsL~iKl~~Pff~~rfpf~~   93 (409)
T KOG3880|consen   14 AVAFWLLGLCNNYGYVVMLSAAEDILSEQVSDPGPTCIPHNSGRECQSVSTGAVLLADILPSLAIKLTAPFFIHRFPFGF   93 (409)
T ss_pred             chHHHHHHHhcccceEeehhhhhhhhccccCCCCCCcccccccccccccccchhhhhhhhHHHHHHHhchhhhhhcccch
Confidence            44556667777777666555555554432221100         001111466666777788888889999999875444


Q ss_pred             hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhHHHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHh
Q 011783          114 VIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (477)
Q Consensus       114 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  193 (477)
                      =..+..++.+.+.++.+++++.++=+.+-.+..++.|.--...--++..+++    ...+-++.+.+.++++|..--..+
T Consensus        94 Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~Y~~----~~i~~WSSGTGgAGliGa~SYa~l  169 (409)
T KOG3880|consen   94 RIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSRYPS----IVIAGWSSGTGGAGLIGASSYAFL  169 (409)
T ss_pred             HHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhccCCC----ceeccccCCCCcchhhhhhHHHHH
Confidence            4455667777888888999999988888888888777655542233333432    234455556666666666655555


Q ss_pred             hh
Q 011783          194 AQ  195 (477)
Q Consensus       194 ~~  195 (477)
                      .+
T Consensus       170 T~  171 (409)
T KOG3880|consen  170 TS  171 (409)
T ss_pred             hh
Confidence            54

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.52  E-value=0.0014  Score=63.13  Aligned_cols=148  Identities=13%  Similarity=0.073  Sum_probs=97.8

Q ss_pred             ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-----chhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 011783          308 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG-----PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASV  382 (477)
Q Consensus       308 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (477)
                      ++|+++.+...+.....+.-.+- + +.|.++|.+.     ||+-+.++.++..++...+...+.....  .....+..+
T Consensus        19 ~l~ls~~~~~~~~~~~~lPw~~K-p-~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s--~~~~~~~l~   94 (433)
T PF03092_consen   19 DLGLSPAQLQRLSSLASLPWSIK-P-LYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESS--AAIAVVLLF   94 (433)
T ss_pred             HcCCCHHHHHHHHHHHhCchHHh-h-hHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccch--hhhHHHHHH
Confidence            38999999988888877766665 3 6789999863     5555566666665555544444331111  112223333


Q ss_pred             HHhhhhHHHHhHHHHHHhhcC--CcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHH
Q 011783          383 VKNLLSVSIITGLFILQNRAV--DQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVE  460 (477)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~  460 (477)
                      +..++.........++..|..  .++.+|...+.......+|+.++..+.|.+.+..          +++..|.+.+.+.
T Consensus        95 la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~----------~~~~~f~i~~~~~  164 (433)
T PF03092_consen   95 LASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF----------GPQGVFLISAALP  164 (433)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC----------CCeEEehHHHHHH
Confidence            344555555666666666644  2234888899999999999999999999998887          6667777777776


Q ss_pred             HHHHHHHhh
Q 011783          461 AIGVLMTFK  469 (477)
Q Consensus       461 ~~~~~~~~~  469 (477)
                      .+..+..+.
T Consensus       165 ~l~~~~~~~  173 (433)
T PF03092_consen  165 LLMLIVALF  173 (433)
T ss_pred             HHHHHHHHH
Confidence            666554444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=97.47  E-value=0.029  Score=50.10  Aligned_cols=97  Identities=12%  Similarity=0.146  Sum_probs=65.1

Q ss_pred             HHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhcc--ccch-
Q 011783           93 FGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR--EEHQ-  168 (477)
Q Consensus        93 ~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~--~~~r-  168 (477)
                      +..+..+++.+.+..++|-|+.+.++...+......- +-+.+..++-+-...|++.+..+.. -+++++.-.  .++| 
T Consensus        69 ~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~N-l~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~~  147 (390)
T KOG3097|consen   69 LSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAAN-LEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQRG  147 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-cchhHHhhccHHHhhccccccccccCcceecHHHHHHHHhhh
Confidence            3444555666699999999999999888776543322 3467889999999999999988777 777766543  2444 


Q ss_pred             --------hhHHHHHHHHhHHHHHHHHhHH
Q 011783          169 --------ALGLSTVSTAWGIGLIIGPALG  190 (477)
Q Consensus       169 --------~~~~~~~~~~~~~g~~~g~~~~  190 (477)
                              .+..+.+...+.-+...|..++
T Consensus       148 ~q~~~~~~~~ffg~Ffii~~~~qv~gn~is  177 (390)
T KOG3097|consen  148 EQAGDGMKVRFFGEFFIIFQCAQVWGNLIS  177 (390)
T ss_pred             hhccCceeeeehhHHHHHHHHHHHHHHHHH
Confidence                    3445555444444444444433

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.44  E-value=0.0025  Score=60.39  Aligned_cols=91  Identities=16%  Similarity=0.239  Sum_probs=72.2

Q ss_pred             hhhHHHHHHHHHHHHHHHhhh---------hHHHHHHHHHHhhhcccchhhH-HHHhhhhcccc---chhhHHHHHHHHh
Q 011783          113 PVIIMGTASVVIFNTLFGLSV---------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE---HQALGLSTVSTAW  179 (477)
Q Consensus       113 ~~~~~~~~~~~i~~~~~~~~~---------~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~---~r~~~~~~~~~~~  179 (477)
                      |.++++.++..+|.++..++.         +.+.++++-++.++|.|..-|. .++.+|.++++   +|.+.+.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            567888888888888854432         2367888889999999999998 99999999865   5777888999999


Q ss_pred             HHHHHHHHhHHHHhhhccccCCccccccccc
Q 011783          180 GIGLIIGPALGGFLAQPAEKYPNLFSSESLF  210 (477)
Q Consensus       180 ~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~  210 (477)
                      ++|..+++.+.+++.+       .++|...|
T Consensus        82 n~G~~~~~~~~~~i~~-------~~~~~~~f  105 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQ-------NYGWFLGF  105 (372)
T ss_dssp             HHHHHHHHHCCCHHHH-------CS-HHHHH
T ss_pred             hhhhHhhcccchhhcc-------ccchhhhh
Confidence            9999999999999987       45555555

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK03612 spermidine synthase; Provisional

Probab=97.44  E-value=0.036  Score=54.66  Aligned_cols=165  Identities=16%  Similarity=0.052  Sum_probs=86.9

Q ss_pred             HHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH---
Q 011783          282 YCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPL---  358 (477)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---  358 (477)
                      .++..++...+.....-.+...     +|-+..+.+.+.+++..+..+|+. +++++.++..++ ....-..+..++   
T Consensus        23 ~f~sg~~~L~yEv~~~r~l~~~-----~G~s~~~~~~ii~~fl~glalGs~-l~~~~~~~~~~~-~~~~e~~i~l~~~~~   95 (521)
T PRK03612         23 VFVCAACGLVYELLLGTLASYL-----LGDSVTQFSTVIGLMLFAMGVGAL-LSKYLLRDAAAG-FVAVELLLALLGGLS   95 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----hCchHHHHHHHHHHHHHHHHHHHH-HHHhhhhhHHHH-HHHHHHHHHHHHHHH
Confidence            3344444445554444444333     677788888888888888888777 666665332222 111111111111   


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHH-Hh
Q 011783          359 LTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFS-WA  437 (477)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~-~~  437 (477)
                      ..++....... ...........+..++..++..|....+..+. ..++.|...|-......+|+++|+.+.+.++- ..
T Consensus        96 ~~ll~~~~~~~-~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~-~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~l  173 (521)
T PRK03612         96 ALILYAAFAFQ-GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRI-RDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRL  173 (521)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhc
Confidence            11111111100 11112222333444566677777766655542 22345677788888899999999999888874 55


Q ss_pred             hhhccccCCCCchHHHHHHHHHHHHHHH
Q 011783          438 QKRLDASFLPGSQMVFFVLNVVEAIGVL  465 (477)
Q Consensus       438 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~  465 (477)
                                |.....++.+.+.++..+
T Consensus       174 ----------G~~~t~~~~a~l~~~~a~  191 (521)
T PRK03612        174 ----------GLIRTAALTGSLNLLAAL  191 (521)
T ss_pred             ----------chHHHHHHHHHHHHHHHH
Confidence                      544444454444444433

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.41  E-value=2.9e-05  Score=76.33  Aligned_cols=164  Identities=12%  Similarity=0.021  Sum_probs=2.8

Q ss_pred             cCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHh----------------
Q 011783          305 KLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAML----------------  368 (477)
Q Consensus       305 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------  368 (477)
                      +++++++++.+.|++.+.+-++.++..+ +..+..+|..|.+.+-.|.++++++.+++.+-...                
T Consensus        29 iErRF~l~S~~~G~i~s~~di~~~~~~~-~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~  107 (539)
T PF03137_consen   29 IERRFGLSSSQSGLISSSYDIGSLVVVL-FVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNS  107 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccc
Confidence            5677999999999999999999999887 66677777777777778888888776655431000                


Q ss_pred             ----------------------------hhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHH
Q 011783          369 ----------------------------SGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMS  420 (477)
Q Consensus       369 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  420 (477)
                                                  .....+.++++..++.|++....++...+|+-|.+++++.+...|+......
T Consensus       108 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~  187 (539)
T PF03137_consen  108 SISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSI  187 (539)
T ss_dssp             --------------------------------------------SSS---------------------------------
T ss_pred             ccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhh
Confidence                                        0011345677778888999999999999999999999999999999999999


Q ss_pred             HHHHHhhhHHHHHHHHhhhhcc------------ccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          421 LFKAAGPAGGGALFSWAQKRLD------------ASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       421 ~g~~~~~~~~g~l~~~~~~~~~------------~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      +|-++|-.++|.+.+.+.+...            +...+.|...|++.+.+.++..+..+.
T Consensus       188 lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~  248 (539)
T PF03137_consen  188 LGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFF  248 (539)
T ss_dssp             -------------------------------------------------------------
T ss_pred             ccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999998888765433211            112335777777777777766655443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.40  E-value=0.0019  Score=60.21  Aligned_cols=108  Identities=17%  Similarity=0.243  Sum_probs=76.1

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHH--HHHHH---HHHHHhhhhHHHHHHHHHHhhhcccchhhH-HH
Q 011783           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA--SVVIF---NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KA  157 (477)
Q Consensus        84 ~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~--~~~i~---~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~  157 (477)
                      .-+...+|.+|-.++.--...+  |+  |++.+.+.+  +..+.   ....-+.++.|..++.-+..|+.+|..++- ..
T Consensus       283 Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~  358 (402)
T PF02487_consen  283 YRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFY  358 (402)
T ss_pred             HHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            6677777777766554322221  33  444333332  22222   223334678999999999999988887776 88


Q ss_pred             HhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhh
Q 011783          158 YACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (477)
Q Consensus       158 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (477)
                      .+.|-.|+++|..++|..+.+-++|..++.+++-.+-.
T Consensus       359 ~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~  396 (402)
T PF02487_consen  359 RISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP  396 (402)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            88888999999999999999999999999988876644

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.26  E-value=0.046  Score=49.76  Aligned_cols=134  Identities=19%  Similarity=0.086  Sum_probs=90.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHh
Q 011783          314 QMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIIT  393 (477)
Q Consensus       314 ~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (477)
                      ...+.......+...++.. ..+.+.||.|||+....+......+.....+...    .....+.......++..+...+
T Consensus        39 ~~~~~~~~~~~~~~~~~~~-~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~  113 (338)
T COG0477          39 LLYGLLLSAFFLGYAIGSL-LAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN----VGLALLLILRLLQGLGGGGLLP  113 (338)
T ss_pred             HHHHHHHHHHHHHHHHHhh-hhhhccccccchHHHHHHHHHHHHHHHHHHhCcc----chHHHHHHHHHHHHhhhHHHHH
Confidence            4677888888888888876 8899999999887777666543333222222222    1111222222324566677888


Q ss_pred             HHHHHHhhcCCc-chhhHHhHHHHH-HHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHH
Q 011783          394 GLFILQNRAVDQ-DQRGAANGIAMT-GMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVE  460 (477)
Q Consensus       394 ~~~~~~~~~~~~-~~~g~~~g~~~~-~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~  460 (477)
                      ....+..+..|+ +.|+...+.... ...++..++|.+.+.+... ...       +|+..|.......
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~  174 (338)
T COG0477         114 VASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-LLW-------GWRAAFLLAALLG  174 (338)
T ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-------chHHHHHHHHHHH
Confidence            889999999887 678999998888 5788889999888877776 111       6777555555444

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.09  E-value=0.24  Score=48.02  Aligned_cols=125  Identities=8%  Similarity=0.017  Sum_probs=83.4

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhh-------------------
Q 011783          312 STQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFG-------------------  372 (477)
Q Consensus       312 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  372 (477)
                      +.+....+.....+...+.-..+..++++|++|++............++++.+........                   
T Consensus        41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~  120 (472)
T TIGR00769        41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM  120 (472)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence            3456677776665655555233789999999999888776665555555544431110000                   


Q ss_pred             ------HHHHHHHHHHHHhhhhHHHHh-HHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHH
Q 011783          373 ------LAFLLNCASVVKNLLSVSIIT-GLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSW  436 (477)
Q Consensus       373 ------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  436 (477)
                            .-+...+..+.....+....+ ..+.+.+|..+.++..+-.++.....++|..+++.+..++.+.
T Consensus       121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~  191 (472)
T TIGR00769       121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKL  191 (472)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                  001111222333445555555 8889999999999999999999999999999999998887753

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.03  E-value=0.15  Score=47.91  Aligned_cols=146  Identities=10%  Similarity=0.012  Sum_probs=98.6

Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh
Q 011783          309 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS  388 (477)
Q Consensus       309 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (477)
                      .|++..+..--.-+...=+-+..++....+.|..+.|+.++++.+...+...++.+.....      .+.+.-++.|...
T Consensus        35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~------~mq~~q~~yg~~~  108 (412)
T PF01770_consen   35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVL------AMQLMQFFYGLAT  108 (412)
T ss_pred             cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHH------HHHHHHHHHHHHH
Confidence            7888888765555554444444455778999999999999999888777777766664422      2223333333333


Q ss_pred             HHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHh
Q 011783          389 VSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF  468 (477)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  468 (477)
                       ..-.+.++++-..+|+++--++.+......-+|.+++..++-.+......        .+.....+......++.++.+
T Consensus       109 -a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~--------sy~~L~~isl~~~~~a~~~~~  179 (412)
T PF01770_consen  109 -AAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGV--------SYFQLNYISLASVSLALLIAL  179 (412)
T ss_pred             -HHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHHHHHHHH
Confidence             33556667777778999999999999999999998888887766663311        455565555555555555554


Q ss_pred             h
Q 011783          469 K  469 (477)
Q Consensus       469 ~  469 (477)
                      +
T Consensus       180 f  180 (412)
T PF01770_consen  180 F  180 (412)
T ss_pred             H
Confidence            4

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.85  E-value=0.0037  Score=62.44  Aligned_cols=164  Identities=12%  Similarity=-0.007  Sum_probs=128.3

Q ss_pred             cCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH-----------------
Q 011783          305 KLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAM-----------------  367 (477)
Q Consensus       305 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  367 (477)
                      ++++++++..+.|++.+.+-++..+... ...+...|..|.+.+-.|.++++++.++..+-..                 
T Consensus       123 iErRF~i~Ss~sG~I~s~~dig~~l~i~-fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~  201 (735)
T KOG3626|consen  123 IERRFKISSSQSGLIASSYDIGNLLLII-FVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVE  201 (735)
T ss_pred             hhhhcCCCCCcceeEeeecccchhhhhH-hHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhcccc
Confidence            4567999999999998888888888766 6677777777888888888888888766654210                 


Q ss_pred             -----------------------------hhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHH
Q 011783          368 -----------------------------LSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTG  418 (477)
Q Consensus       368 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  418 (477)
                                                   ..+...|+.+++..++.|++....++...+|+-|.+.+++.....|+..++
T Consensus       202 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~  281 (735)
T KOG3626|consen  202 NPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSM  281 (735)
T ss_pred             CCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHH
Confidence                                         011125677888888899999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHhhhh-cc--------ccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          419 MSLFKAAGPAGGGALFSWAQKR-LD--------ASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       419 ~~~g~~~~~~~~g~l~~~~~~~-~~--------~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      ..+|-++|-.+++.+...+.+. ..        +...+.|...|++.+.+.++..+..++
T Consensus       282 ~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~  341 (735)
T KOG3626|consen  282 AILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFF  341 (735)
T ss_pred             HHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999998876554 11        123345777888888888888777665

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.49  E-value=0.035  Score=39.11  Aligned_cols=73  Identities=21%  Similarity=0.159  Sum_probs=59.1

Q ss_pred             hhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 011783          288 HDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAM  367 (477)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (477)
                      .-+.+...+|....+      .++|..+.|++-+.+.++..++.+ ...++.++.++++.+..+.+...+..+.+.+...
T Consensus         7 gRFayTplLP~M~~~------~~ls~~~ag~lasaNy~GYL~GAl-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~   79 (85)
T PF06779_consen    7 GRFAYTPLLPLMQAD------GGLSLSQAGWLASANYLGYLVGAL-LASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHS   79 (85)
T ss_pred             HHHHHHhHhHHHHHh------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            345666677755544      799999999999999999999998 7788888877888888888888888777766654

Note that many members are hypothetical proteins.

>PRK03612 spermidine synthase; Provisional

Probab=96.47  E-value=0.12  Score=51.05  Aligned_cols=141  Identities=15%  Similarity=0.074  Sum_probs=80.7

Q ss_pred             HHHHHHhhhchhchHhHHH-HHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHH--
Q 011783           47 WIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV--  123 (477)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~--  123 (477)
                      ....++.++..-.+-.+.. .+..-+|.+..+      .+.+.+++.+|.++|+.+.|++.++--|+.. .+-+.+..  
T Consensus        20 ~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~------~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~   92 (521)
T PRK03612         20 LAAVFVCAACGLVYELLLGTLASYLLGDSVTQ------FSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLG   92 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHH
Confidence            3344444444444434443 344456777777      8999999999999999999988743322222 11111111  


Q ss_pred             -HHHHHH----HhhhhH-HHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhh
Q 011783          124 -IFNTLF----GLSVNF-WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (477)
Q Consensus       124 -i~~~~~----~~~~~~-~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (477)
                       ++..+.    ++...+ ..++..-++.++..|+..|. ..+..+. ..++-++..|..+....+|.++|.++.+++.-
T Consensus        93 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~-~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl  170 (521)
T PRK03612         93 GLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRI-RDQHLGHNVATVLAADYLGALVGGLAFPFLLL  170 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence             111111    111111 11233345556667777776 4444332 22345677888888999999999999888764

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.40  E-value=0.048  Score=52.00  Aligned_cols=129  Identities=8%  Similarity=-0.101  Sum_probs=92.9

Q ss_pred             hHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHh---h---h
Q 011783           60 LFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL---S---V  133 (477)
Q Consensus        60 ~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~---~---~  133 (477)
                      ....+..+.+.-|.++..      +|..-+...+....+.+...++.+|+|..|.=.++...-.....++..   +   +
T Consensus       277 f~~lmt~yl~~~G~s~~~------igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~  350 (432)
T PF06963_consen  277 FGGLMTAYLKSQGYSPSV------IGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSP  350 (432)
T ss_pred             CcHHHHHHHHHCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            345556666666999999      999999999999999999999999999988877776654433333322   1   1


Q ss_pred             ----hHHHHHHHHHHhhhc-ccchhhHHHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhh
Q 011783          134 ----NFWMAVLTRFLLGSL-NGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (477)
Q Consensus       134 ----~~~~l~~~r~l~G~~-~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (477)
                          +...++.+-.+.-+| .+......-++-|..|+++||...|.-....++-.++-..++-.+.
T Consensus       351 ~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~  416 (432)
T PF06963_consen  351 FSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFP  416 (432)
T ss_pred             chhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence                333344444444444 3333333888999999999999999999999988888777765443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.26  E-value=0.036  Score=52.50  Aligned_cols=114  Identities=9%  Similarity=-0.021  Sum_probs=81.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcc---hhhHHhHHHHHHH
Q 011783          346 MVARIAGVLTIPLLTSYPYIAMLSGF---GLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQD---QRGAANGIAMTGM  419 (477)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~  419 (477)
                      +++..+.++..++.+++.........   .....+.+...+.+++.++.=|...++..+.++++   ++.+....+....
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            45667777777777775555433221   11223444445567788888899999999988765   4666777778888


Q ss_pred             HHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          420 SLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       420 ~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      ++|..+++.+.+++-++.          ||...|.+.++..+++.+..+.
T Consensus        82 n~G~~~~~~~~~~i~~~~----------~~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNY----------GWFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-----------HHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhHhhcccchhhcccc----------chhhhhhHHHHHHHHHHHHHHh
Confidence            999999999999998777          9999999999998888887655

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.78  E-value=0.12  Score=49.54  Aligned_cols=148  Identities=15%  Similarity=0.250  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHhhhchhchHhHHHHHH-HHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhh---hcCCchhhHH
Q 011783           42 ELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD---RYGRKPVIIM  117 (477)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~D---r~Grr~~~~~  117 (477)
                      ++..+....+.+++.........|.-. -....+...   ..+.++-.-...++..++..+.+.+++   ++||++.+.+
T Consensus       241 ~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~---~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~  317 (461)
T KOG3098|consen  241 KMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNT---TYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLI  317 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcc---hhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhH
Confidence            344555555555555555555555322 111222221   111334444445555556666666665   5799999999


Q ss_pred             HHHHHHHHHHHHHhh------------------hhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHH
Q 011783          118 GTASVVIFNTLFGLS------------------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTA  178 (477)
Q Consensus       118 ~~~~~~i~~~~~~~~------------------~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~  178 (477)
                      +..+..+..++.-..                  +++...++.-++.|++.+..... +.++.+.. +++|.++.++...-
T Consensus       318 ~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfy  396 (461)
T KOG3098|consen  318 GIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFY  396 (461)
T ss_pred             HHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHH
Confidence            988888777766442                  24667777889999999998887 99999999 68899999988888


Q ss_pred             hHHHHHHHHhHHHHh
Q 011783          179 WGIGLIIGPALGGFL  193 (477)
Q Consensus       179 ~~~g~~~g~~~~~~l  193 (477)
                      ..++..++-......
T Consensus       397 q~~~s~v~~f~~~~~  411 (461)
T KOG3098|consen  397 QSVASCVAFFFSPYL  411 (461)
T ss_pred             HHHHHHHHhhhhhhh
Confidence            888777665554443

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=95.74  E-value=0.0048  Score=52.81  Aligned_cols=66  Identities=17%  Similarity=0.296  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhh---------hhhcCCch
Q 011783           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLV---------ADRYGRKP  113 (477)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l---------~Dr~Grr~  113 (477)
                      .+....+.+++-+..+.....+-.+.++.+.++..      ...+.-+..+.-++..++.|..         .||+|||+
T Consensus        19 vf~yGvGHmlNDitAScWFTYlllfltqiglsp~~------~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~   92 (412)
T KOG4830|consen   19 VFAYGVGHMLNDITASCWFTYLLLFLTQIGLSPSS------RAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRM   92 (412)
T ss_pred             eeeechhHHHhhHHHHHHHHHHHHHHHHhcCCcch------hHHHHHhhHHHHHHhcccccccccccccHHHhhhhccee
Confidence            34455667777777777777777888899999988      7777777888888888887754         46999987


Q ss_pred             h
Q 011783          114 V  114 (477)
Q Consensus       114 ~  114 (477)
                      .
T Consensus        93 ~   93 (412)
T KOG4830|consen   93 S   93 (412)
T ss_pred             e
Confidence            6

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=95.46  E-value=0.27  Score=47.45  Aligned_cols=110  Identities=13%  Similarity=0.037  Sum_probs=75.4

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhhcCCc-hhhHHHHHH---HHHHHHHHHhh---------hhHHHHHHHHHHhhhccc
Q 011783           84 AGYVGSSFMFGRALTSVFWGLVADRYGRK-PVIIMGTAS---VVIFNTLFGLS---------VNFWMAVLTRFLLGSLNG  150 (477)
Q Consensus        84 ~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr-~~~~~~~~~---~~i~~~~~~~~---------~~~~~l~~~r~l~G~~~g  150 (477)
                      .-.....+.++-.+|..+..+.. .-++| +.+.+..+.   +.-..++|..-         ++-+..++.-++.|+..|
T Consensus       309 ~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG  387 (437)
T TIGR00939       309 PIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG  387 (437)
T ss_pred             HHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence            45667888888888887654431 11223 133333333   22223333322         356677778999999999


Q ss_pred             chhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhh
Q 011783          151 LLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (477)
Q Consensus       151 ~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  194 (477)
                      -.... ..+..+..+++||..+-.+...+..+|..+|..++-.+.
T Consensus       388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~~  432 (437)
T TIGR00939       388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLFV  432 (437)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98887 888899999999999999999999999999888765443

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=95.29  E-value=0.057  Score=50.70  Aligned_cols=122  Identities=16%  Similarity=0.005  Sum_probs=86.9

Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh----hcchhHHH-HHHHHHHHHHHHHHHHHHhh--------h---hh
Q 011783          309 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI----LGPIMVAR-IAGVLTIPLLTSYPYIAMLS--------G---FG  372 (477)
Q Consensus       309 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~---~~  372 (477)
                      .|.+....+.+.....+.+.+.++ +.|..+||    +||||..+ .+.....+++.++++.....        .   ..
T Consensus        62 lGvphk~~S~iw~~gPi~G~~vQP-~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~r  140 (498)
T KOG0637|consen   62 LGVPHKWSSIIWLCGPLSGLLVQP-LVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPR  140 (498)
T ss_pred             cCCCcccccccccccccccceecc-cccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchH
Confidence            788888889998888889999998 77888886    56655544 55555666666666554321        1   11


Q ss_pred             HHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhH-HhHHHHHHHHHHHHHhhhHHH
Q 011783          373 LAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGA-ANGIAMTGMSLFKAAGPAGGG  431 (477)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~~~~g~~~~~~~~g  431 (477)
                      .....++...+.-+.........-++..+....+++.+ +++....+..+|+.+|-.+.+
T Consensus       141 ai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  141 AIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             HHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence            22334444455556677778888899999888777777 999999999999888776655

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=95.27  E-value=0.34  Score=44.35  Aligned_cols=150  Identities=10%  Similarity=-0.010  Sum_probs=86.7

Q ss_pred             hHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHH
Q 011783           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (477)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~  120 (477)
                      +..+.+.++.++...+.-+.......++.+++.+.-.     +.+.-..+-.....+..++.|...|+..|+|++...++
T Consensus        27 ~~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~-----lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~  101 (503)
T KOG2601|consen   27 STVIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLL-----LVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLL  101 (503)
T ss_pred             ceeehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceeh-----hHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHh
Confidence            3455678888888888888888888777777654322     02222223333456777888999999999999988877


Q ss_pred             HHHHHHHHHH------hh------hhHHHHHHHHHHhhhcccc--hh-hHHH--Hhhhhc----cccchhhHH---HHHH
Q 011783          121 SVVIFNTLFG------LS------VNFWMAVLTRFLLGSLNGL--LG-PIKA--YACEIF----REEHQALGL---STVS  176 (477)
Q Consensus       121 ~~~i~~~~~~------~~------~~~~~l~~~r~l~G~~~g~--~~-~~~~--~i~~~~----~~~~r~~~~---~~~~  176 (477)
                      +--++.++++      +.      .++..+..+-.+.-.-.+.  .. .+.+  +-.||.    ..+.+....   +...
T Consensus       102 lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir  181 (503)
T KOG2601|consen  102 LQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIR  181 (503)
T ss_pred             hccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhh
Confidence            6544443332      21      2444554444443332221  11 1122  223443    233343333   4444


Q ss_pred             HHhHHHHHHHHhHHHHhhh
Q 011783          177 TAWGIGLIIGPALGGFLAQ  195 (477)
Q Consensus       177 ~~~~~g~~~g~~~~~~l~~  195 (477)
                      ..-..-..+.|.+.|.+..
T Consensus       182 ~iDq~tn~Lapv~tg~Iit  200 (503)
T KOG2601|consen  182 GIDQSTNLLAPVITGLIIT  200 (503)
T ss_pred             hhhhhhhchhhhhhcccce
Confidence            4555567788888888877

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=93.75  E-value=0.021  Score=52.42  Aligned_cols=107  Identities=20%  Similarity=0.145  Sum_probs=2.4

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhh-cCCchhhHHHH--HHHHHHHHHHH----------hhhhHHHHHHHHHHhhhcccch
Q 011783           86 YVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGT--ASVVIFNTLFG----------LSVNFWMAVLTRFLLGSLNGLL  152 (477)
Q Consensus        86 ~~~s~~~~~~~~~~~~~G~l~Dr-~Grr~~~~~~~--~~~~i~~~~~~----------~~~~~~~l~~~r~l~G~~~g~~  152 (477)
                      .+...+.++-.+|....++.-=+ -.+|++...+.  +++.-..++|.          ..+|-+..++.-++.|+..|-.
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl  265 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL  265 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence            45678888888888887764211 13444443321  22222222221          2235577788888999999998


Q ss_pred             hhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHH
Q 011783          153 GPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (477)
Q Consensus       153 ~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  192 (477)
                      ... ..+..+..++++|..+-.+......+|..+|..++-.
T Consensus       266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~  306 (309)
T PF01733_consen  266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL  306 (309)
T ss_dssp             -HHHH------------------------------------
T ss_pred             hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887 8889999999999999888888888888888776543

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=93.01  E-value=0.034  Score=51.01  Aligned_cols=109  Identities=10%  Similarity=0.066  Sum_probs=3.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHhhhhHH
Q 011783          319 VLAITGFSLLVFQLSLYPFLERIL-GPIMVARIAGVLTIPLLTSYPYIAMLSG-------FGLAFLLNCASVVKNLLSVS  390 (477)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~  390 (477)
                      .+..+.++-.+|+. +..+..-+. ++|++. ...+.-.+...++......+.       ...-....+..++.++..+-
T Consensus       187 ~fl~Fn~gD~iGR~-l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy  264 (309)
T PF01733_consen  187 LFLLFNLGDFIGRF-LASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY  264 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcch-hcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence            45567788888877 555532221 233333 333333333222222211100       01112333334444666777


Q ss_pred             HHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhH
Q 011783          391 IITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAG  429 (477)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~  429 (477)
                      .......+..+.+++++|..+-.+....-.+|-.+|..+
T Consensus       265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l  303 (309)
T PF01733_consen  265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL  303 (309)
T ss_dssp             --HHHH---------------------------------
T ss_pred             hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777788888888899888888877777777777664

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=92.65  E-value=11  Score=37.00  Aligned_cols=124  Identities=8%  Similarity=0.021  Sum_probs=75.2

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHh-----hh-----------hh--H
Q 011783          312 STQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAML-----SG-----------FG--L  373 (477)
Q Consensus       312 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----------~~--~  373 (477)
                      +++....+-....+...+.-..+..++.++++++++...........+.++++.-.+     ..           ..  .
T Consensus        56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~  135 (491)
T PF03219_consen   56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK  135 (491)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence            455555554443343333333377899999999887776555544444444332110     00           00  0


Q ss_pred             H-------HHHHHHHHHHhhhhHHHHh-HHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHH
Q 011783          374 A-------FLLNCASVVKNLLSVSIIT-GLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFS  435 (477)
Q Consensus       374 ~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  435 (477)
                      +       +...+.....-..+....+ ..+.+.++..+.++..+-.++.....++|..++..+...+.+
T Consensus       136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0       0111122222233344433 578999999999999999999999999999999888887777

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=91.75  E-value=6.8  Score=39.30  Aligned_cols=160  Identities=15%  Similarity=0.071  Sum_probs=94.7

Q ss_pred             HHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHHHhh---
Q 011783          294 EIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-GPIMVARIAGVLTIPLLTSYPYIAMLS---  369 (477)
Q Consensus       294 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---  369 (477)
                      ..+-.|+...     ++.+...+.-......-....... .+++++|-+ ||-+++.++.++..+++.++.......   
T Consensus        58 ~nlv~ylt~~-----~~~~~~~aa~~v~~f~G~~~~~~l-~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~  131 (571)
T KOG1237|consen   58 SNLVTYLTLE-----LHASGGGAANNVNAFGGTQFLLPL-LGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALL  131 (571)
T ss_pred             hHHHHHHHHH-----hccchHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            3344455544     555555444444444333344434 788888864 788888888887777765555443322   


Q ss_pred             ----------------hhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcc----hhh--HHhHHHHHHHHHHHHHhh
Q 011783          370 ----------------GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQD----QRG--AANGIAMTGMSLFKAAGP  427 (477)
Q Consensus       370 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g--~~~g~~~~~~~~g~~~~~  427 (477)
                                      .......+.....+...+.++.-|...+.-++-++++    .+.  .-+.......+.|..++-
T Consensus       132 p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~  211 (571)
T KOG1237|consen  132 PFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQ  211 (571)
T ss_pred             CccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHH
Confidence                            1112334445555555677777888888888878732    222  334444455566666666


Q ss_pred             hHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          428 AGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       428 ~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      .+.-++-+..          +|...|.+..++..++.++.+.
T Consensus       212 t~~vyiq~~~----------~w~lgf~i~~~~~~lai~iF~~  243 (571)
T KOG1237|consen  212 TVLVYIQDNV----------GWKLGFGIPTVLNALAILIFLP  243 (571)
T ss_pred             HHHHhhhhcc----------cceeeccHHHHHHHHHHHHHHc
Confidence            6555544444          8888888888887777766543

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=88.37  E-value=1.5  Score=38.27  Aligned_cols=102  Identities=20%  Similarity=0.202  Sum_probs=55.8

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhh-cCCchhhH----HHHHHHHHHHHHHHh-h----hhHHHHHHHHHHhhhcccchh
Q 011783           84 AGYVGSSFMFGRALTSVFWGLVADR-YGRKPVII----MGTASVVIFNTLFGL-S----VNFWMAVLTRFLLGSLNGLLG  153 (477)
Q Consensus        84 ~g~~~s~~~~~~~~~~~~~G~l~Dr-~Grr~~~~----~~~~~~~i~~~~~~~-~----~~~~~l~~~r~l~G~~~g~~~  153 (477)
                      .....-++..|..+|....|..... +.||+.+.    .+++.+.+..+.... .    .++..+++.-++.|.+.=...
T Consensus       143 ~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ  222 (267)
T PF07672_consen  143 IPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQ  222 (267)
T ss_pred             hHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence            4555666777777888888888774 45666544    234444444433211 1    146667888888888633333


Q ss_pred             hHHHHhhhhccccchhhHHHHHHHHhHHHHHH
Q 011783          154 PIKAYACEIFREEHQALGLSTVSTAWGIGLII  185 (477)
Q Consensus       154 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~  185 (477)
                      ++.-.+.+-++..++.+.--.++..+++|-++
T Consensus       223 ~ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~  254 (267)
T PF07672_consen  223 GVILNLPHEYKGYNPKKIGIQFGLIWGFGYIF  254 (267)
T ss_pred             HHHhcChhhhcCCCcceehhHHHHHHHHHHHH
Confidence            33344455554443333333444556665544

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=87.26  E-value=3  Score=37.51  Aligned_cols=74  Identities=15%  Similarity=0.178  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHh
Q 011783          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (477)
Q Consensus       120 ~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  193 (477)
                      +++.+...+..+.++++..++.-+..|+-+|..++- .--+.+-.++++|..+++....+-++|..++.+++-.+
T Consensus       327 l~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  327 LLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            344455556667889999999999999977776665 66666667789999999999999999988887776544

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=87.19  E-value=21  Score=33.50  Aligned_cols=148  Identities=10%  Similarity=0.038  Sum_probs=68.5

Q ss_pred             hhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHH---HHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 011783          274 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLA---ITGFSLLVFQLSLYPFLERILGPIMVARI  350 (477)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  350 (477)
                      ++..++..+.+.... .+.....|..++.      -|.|-+..+....   +..+ -++=++++-..-.+|+|||+..+.
T Consensus        32 ~illLl~LYllQGiP-~GL~~~iP~lL~a------k~vSyt~~a~fS~ay~P~sL-KllWaPiVDs~y~k~~GrrksWvv  103 (510)
T KOG3574|consen   32 SILLLLFLYLLQGIP-LGLIGAIPLLLQA------KGVSYTSQAIFSFAYWPFSL-KLLWAPIVDSVYSKRFGRRKSWVV  103 (510)
T ss_pred             hHHHHHHHHHHcCCc-hhHhhhhHHHhcC------CCcchhhhhhhhhhhhHHHH-HHHHHhhhHHHHHHhhccccceee
Confidence            344444444443332 3444466666553      4555444443322   2211 122222244444559998875543


Q ss_pred             -HHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHH
Q 011783          351 -AGVLTIPLLTSYPYIAMLS-----GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKA  424 (477)
Q Consensus       351 -~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~  424 (477)
                       ...+.+..+..+....+..     ...........+++..+....--.+..........+++.|-++.........|.+
T Consensus       104 p~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~Gyf  183 (510)
T KOG3574|consen  104 PCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYF  183 (510)
T ss_pred             ehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHH
Confidence             3333333333333322111     0111112222223333444444455556666667788888777666656666666


Q ss_pred             HhhhH
Q 011783          425 AGPAG  429 (477)
Q Consensus       425 ~~~~~  429 (477)
                      ++..+
T Consensus       184 L~~~i  188 (510)
T KOG3574|consen  184 LGNVV  188 (510)
T ss_pred             hhcce
Confidence            66544

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=86.90  E-value=1.9  Score=37.87  Aligned_cols=148  Identities=13%  Similarity=0.040  Sum_probs=79.3

Q ss_pred             CCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 011783          306 LGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKN  385 (477)
Q Consensus       306 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (477)
                      .+.+|+...++|.++.......++.+. +.+-+.|+.|||+..+.-.+...++++    ....+   ..-++.+.=.++|
T Consensus        64 YstYgFgkG~IgqLfiaGfgSsmLFGt-ivgSLaDkqGRKracvtycitYiLsCi----TKhSp---qYkVLmVGR~LGG  135 (454)
T KOG4332|consen   64 YSTYGFGKGDIGQLFIAGFGSSMLFGT-IVGSLADKQGRKRACVTYCITYILSCI----TKHSP---QYKVLMVGRVLGG  135 (454)
T ss_pred             ehhcCccCCccceeeecccchHHHHHH-HHHHHHhhhccccceeeehHHHHHHHH----hhcCC---ceEEEeehhhhhh
Confidence            345888888999887766666667666 788999999999876655544444433    11111   1113333444445


Q ss_pred             hhhHHHHhHHHHH-HhhcC-----CcchhhHHhHHHH-HHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHH
Q 011783          386 LLSVSIITGLFIL-QNRAV-----DQDQRGAANGIAM-TGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNV  458 (477)
Q Consensus       386 ~~~~~~~~~~~~~-~~~~~-----~~~~~g~~~g~~~-~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~  458 (477)
                      +.....+...-+. +.|-.     |++-.....+=.. ..+.+-++++...+..+.|+...        |.-.+|-..+.
T Consensus       136 iaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~sl--------GPVAPFdAAac  207 (454)
T KOG4332|consen  136 IATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSL--------GPVAPFDAAAC  207 (454)
T ss_pred             HHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc--------CCCCchHHHHH
Confidence            5555555555443 34432     2222222222222 12233334444444445554421        55567777776


Q ss_pred             HHHHHHHHHhh
Q 011783          459 VEAIGVLMTFK  469 (477)
Q Consensus       459 ~~~~~~~~~~~  469 (477)
                      +..++..+.+.
T Consensus       208 fLaigmAvil~  218 (454)
T KOG4332|consen  208 FLAIGMAVILS  218 (454)
T ss_pred             HHHHHHHHHHh
Confidence            66666655543

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=86.53  E-value=30  Score=32.82  Aligned_cols=43  Identities=14%  Similarity=0.063  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHH
Q 011783          373 LAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAM  416 (477)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~  416 (477)
                      ..........+.+++.+......+...++ .|+|.....++-.+
T Consensus       116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm~G~a  158 (406)
T KOG1479|consen  116 FFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVMSGQA  158 (406)
T ss_pred             hHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHHhcch
Confidence            44455555555667777777777777776 67666555444333

>PRK11469 hypothetical protein; Provisional

Probab=83.15  E-value=26  Score=29.32  Aligned_cols=52  Identities=10%  Similarity=-0.012  Sum_probs=31.3

Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 011783          310 NYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTS  361 (477)
Q Consensus       310 g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  361 (477)
                      |.+.........+........+..++.++.+++++|..+.-|.++..++.-.
T Consensus       130 g~~~~~~~~~ig~~s~~~~~~G~~lG~~~g~~~g~~a~~lgG~iLI~iGi~i  181 (188)
T PRK11469        130 QVNIIATALAIGCATLIMSTLGMMVGRFIGSIIGKKAEILGGLVLIGIGVQI  181 (188)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444555555555555544546777777788887777777666666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	477
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
2cfq_A	417	Lactose permease; transport, transport mechanism,	8e-08
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	1e-07
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	4e-05
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	5e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 2e-08
 Identities = 73/446 (16%), Positives = 128/446 (28%), Gaps = 159/446 (35%)

Query: 87  VGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG---------------- 130
           V     F      +FW  +  +    P  ++      +   L                  
Sbjct: 176 VQCKMDFK-----IFW--LNLKNCNSPETVL-----EMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 131 -LSVNFWMAVLTRFLLGSL--NGLL--------GPIKAYA--CEIF---REEHQALGLST 174
            L ++   A L R L      N LL            A+   C+I    R +     LS 
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 175 VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF----PYFLP---C----LCIS 223
            +T     + +          P E        +SL  K+    P  LP          +S
Sbjct: 284 ATT---THISLDHHSMTL--TPDE-------VKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 224 LFAFGETLH---------RHNDDD---DSCDVSYDALESAS------------------- 252
           +    E++          +H + D      + S + LE A                    
Sbjct: 332 II--AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389

Query: 253 -------AEVKEEEGREATP---KKSLLKNWPLMSSIIVYCVF-----------SLHDM- 290
                   +V + +         K SL++  P  S+I +  ++           +LH   
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449

Query: 291 --AYSEI--FSLWANSPKKLGGLNYSTQMVGEVLA-------ITGFSLLVFQLSLYPFLE 339
              Y+    F      P  L    Y    +G  L        +T F ++        FLE
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLD--QYFYSHIGHHLKNIEHPERMTLFRMVFLDFR---FLE 504

Query: 340 ---RILGPIMVARIAGVLTIPLLTSY-PYI--------AMLSGFGLAFLLNCASVV---- 383
              R       A  + + T+  L  Y PYI         +++   L FL      +    
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI-LDFLPKIEENLICSK 563

Query: 384 -KNLLSVSIIT---GLFILQNRAVDQ 405
             +LL ++++     +F   ++ V +
Sbjct: 564 YTDLLRIALMAEDEAIFEEAHKQVQR 589

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 53.4 bits (128), Expect = 8e-08
 Identities = 51/400 (12%), Positives = 119/400 (29%), Gaps = 56/400 (14%)

Query: 81  GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI---------FNTLFGL 131
            S  G + ++      L    +GL++D+ G +  ++     +++         F  L   
Sbjct: 42  KSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY 101

Query: 132 SVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWG-IGLIIGPALG 190
           ++     V   +L    N     ++A+  ++ R  +   G + +   +G +G  +G ++ 
Sbjct: 102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARM---FGCVGWALGASIV 158

Query: 191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALES 250
           G +              ++  +F ++L   C  + A      + +           +   
Sbjct: 159 GIMF-------------TINNQFVFWLGSGCALILAVLLFFAKTDAP--------SSATV 197

Query: 251 ASAEVKEEEGREATPKKSLLKNWPLMS-SIIVYCVFSLHDMAYSEIFSLWANSPKKLGGL 309
           A+A               L +   L   S+ V  V   +D+   +  + + +        
Sbjct: 198 ANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGE-- 255

Query: 310 NYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLS 369
              T++ G V  +               + RI G      +AG +    +    +     
Sbjct: 256 -QGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFATSAL 313

Query: 370 GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGI-AMTGMSLFKAAGPA 428
              +   L+   V        ++ G F       +         +       L       
Sbjct: 314 EVVILKTLHMFEV------PFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSV 367

Query: 429 GGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF 468
             G ++             G Q  + VL +V     L++ 
Sbjct: 368 LAGNMYESI----------GFQGAYLVLGLVALGFTLISV 397

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 20/149 (13%), Positives = 56/149 (37%), Gaps = 9/149 (6%)

Query: 89  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL 148
            +++    ++ +F+G ++DR GR+PVI++G +  ++   +   + +  + +    + G +
Sbjct: 42  GAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQG-M 100

Query: 149 NGLLGPIKAYAC--EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSS 206
              +G + A     +++         S ++    +  ++ P +GG L      +   +  
Sbjct: 101 GTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYLF 159

Query: 207 ESLFGKFPYFLPCLCISLFAFGETLHRHN 235
             +                   ET     
Sbjct: 160 LLVLC-----AGVTFSMARWMPETRPVDA 183

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 44/315 (13%), Positives = 87/315 (27%), Gaps = 39/315 (12%)

Query: 84  AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV---NFWMAVL 140
           AG + S+F FG  +  +  G++  +   K  II G     +   LF  +    N+ + ++
Sbjct: 63  AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLV 122

Query: 141 TRFLLGSLNGLLG-PIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL------ 193
             F++ +  G L      +   +  E      L+   T    G II    G  L      
Sbjct: 123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182

Query: 194 --------AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSY 245
                       E+      S  L  + PY +    + L A    L +            
Sbjct: 183 HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS------ 236

Query: 246 DALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKK 305
                       ++G  +     L +      +++    +     A       +A     
Sbjct: 237 ------DNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEE-- 288

Query: 306 LGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-----LGPIMVARIAGVLTIPLLT 360
                 +       L  T     + + +    + R      L    +  +A  L      
Sbjct: 289 --IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG 346

Query: 361 SYPYIAMLSGFGLAF 375
            +  +  L+      
Sbjct: 347 GHVGLIALTLCSAFM 361

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 27/203 (13%), Positives = 56/203 (27%), Gaps = 11/203 (5%)

Query: 85  GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFL 144
           G+  S        +    G V+DR   +  +  G           G       ++   F+
Sbjct: 65  GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFV 124

Query: 145 LGSLNGLL-GPIKAYACEI----FREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK 199
           L  L G   G             + ++ +   +S  + A  +G  I P L          
Sbjct: 125 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFND 184

Query: 200 YPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEE 259
           +       +           + +  FA      +        +   D  +  + + ++E 
Sbjct: 185 WHAALYMPAFCAIL------VALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQEL 238

Query: 260 GREATPKKSLLKNWPLMSSIIVY 282
             +    + +L N  L    I  
Sbjct: 239 TAKQIFMQYVLPNKLLWYIAIAN 261

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	477
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	100.0
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	100.0
2cfq_A	417	Lactose permease; transport, transport mechanism,	100.0
2xut_A	524	Proton/peptide symporter family protein; transport	99.96
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.53
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.49
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.49
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.42
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.4
2xut_A	524	Proton/peptide symporter family protein; transport	99.39
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.25

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=1.2e-40  Score=323.28  Aligned_cols=399  Identities=12%  Similarity=0.044  Sum_probs=306.5

Q ss_pred             CchhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHH
Q 011783           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (477)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~  117 (477)
                      .+++.+..+++..++..++...+.+.+|.+.+++ .+..+      .|++.+++.++..++++++|+++||+|||+++++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~   97 (451)
T 1pw4_A           25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPA   97 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhH------HHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHH
Confidence            3455677788888899999999999999999999 99999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh----hhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHH
Q 011783          118 GTASVVIFNTLFGL----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (477)
Q Consensus       118 ~~~~~~i~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  192 (477)
                      +.++.+++.+++++    ++|++.++++|+++|++.+...+. .+++.|++|+++|++++++.+.+..+|.++||.+++.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  177 (451)
T 1pw4_A           98 GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL  177 (451)
T ss_dssp             HHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999    999999999999999999988887 9999999999999999999999999999999999999


Q ss_pred             hhhccccCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcc
Q 011783          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  272 (477)
Q Consensus       193 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (477)
                      +.+...+||+.+....+.     .++..++..+.+||+++..+.++++.... +..++..++.+++........++.+|+
T Consensus       178 l~~~~g~w~~~f~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (451)
T 1pw4_A          178 GMAWFNDWHAALYMPAFC-----AILVALFAFAMMRDTPQSCGLPPIEEYKN-DYPDDYNEKAEQELTAKQIFMQYVLPN  251 (451)
T ss_dssp             HHHHTCCSTTCTHHHHHH-----HHHHHHHHHHHCCCSSTTTCCCSCTTTCC-C-------------CCTHHHHHHTSSC
T ss_pred             HHHHhccHHHHHHHHHHH-----HHHHHHHHHhhccCCHhhcCCCChhhhcc-cccccchhhhhcccccccchHHHHHcC
Confidence            886322255544322211     22233344456677665433221111100 000000000000011111124778899


Q ss_pred             hhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--cchhHHHH
Q 011783          273 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL--GPIMVARI  350 (477)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~  350 (477)
                      |.++...+..++..........+.|.|+.+.     +|+++.+.+.+.+...++.+++.+ +.+++.||+  ++|+.+..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~  325 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGTL-LCGWMSDKVFRGNRGATGV  325 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB-----SCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTSTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCchhHHH
Confidence            9999988888888888788888888887754     789999999999999999999988 889999999  99888877


Q ss_pred             HHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHH-HHHHhhh
Q 011783          351 AGVLTI-PLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSL-FKAAGPA  428 (477)
Q Consensus       351 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~~~~  428 (477)
                      +..+.. ++++.+.+....   ..+ .......+.+++.....+....+..+.+|++.||+++|+.+....+ |..++|.
T Consensus       326 ~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~  401 (451)
T 1pw4_A          326 FFMTLVTIATIVYWMNPAG---NPT-VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA  401 (451)
T ss_dssp             HHHHHHHHHHHHTTSCCTT---CHH-HHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccc---CHH-HHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            766655 454444332211   111 2333334445666777778888999999999999999999999999 9999999


Q ss_pred             HHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          429 GGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       429 ~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      +.|.+.+..          |++..|++.+++.+++.++.+.
T Consensus       402 ~~g~l~~~~----------g~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          402 IVGYTVDFF----------GWDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHHHHHHSS----------CSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhc----------CcHHHHHHHHHHHHHHHHHHHH
Confidence            999999987          8889999988888887776654

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=1.1e-38  Score=308.25  Aligned_cols=385  Identities=13%  Similarity=0.101  Sum_probs=294.3

Q ss_pred             CCchhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhH
Q 011783           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (477)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~  116 (477)
                      +.+++.+..+.+..++..++.....+.+|.+.+++|.+..+      .|++.+++.+++.++++++|+++||+|||++++
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~   95 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQ------AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGII   95 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHH------HHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHH
Confidence            34456677778888888899899999999999999999999      999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH---HhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHH
Q 011783          117 MGTASVVIFNTLF---GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (477)
Q Consensus       117 ~~~~~~~i~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  192 (477)
                      ++.++.+++.+++   +++++++.+++.|++.|++.+...+. .++++|++|+++|++++++.+.+.++|..++|.+++.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  175 (438)
T 3o7q_A           96 TGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS  175 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999   88899999999999999999998887 9999999999999999999999999999999999999


Q ss_pred             hh-hcccc----------------CC--cccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhc
Q 011783          193 LA-QPAEK----------------YP--NLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASA  253 (477)
Q Consensus       193 l~-~~~~~----------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (477)
                      +. +....                |+  ...+|++.|...........+..+.. ..++.+++++++.+           
T Consensus       176 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~-----------  243 (438)
T 3o7q_A          176 LILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT-KFPALQSDNHSDAK-----------  243 (438)
T ss_dssp             HHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCTTTCCCCSS-----------
T ss_pred             HHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-cCCccccccccccc-----------
Confidence            98 42221                00  00004433311111111111111111 11111111000000           


Q ss_pred             cchhhcccCCchhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHh-hcCcccCCccccchhhhHHHHHHHHHHHHHHHH
Q 011783          254 EVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLW-ANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQL  332 (477)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~  332 (477)
                           +.+.....++++|+|.++...+..++..........+.+.| ..+.     +|+++.+.+...+...++.+++.+
T Consensus       244 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~  313 (438)
T 3o7q_A          244 -----QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEI-----PGMTAGFAANYLTGTMVCFFIGRF  313 (438)
T ss_dssp             -----TTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----ccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----CCcchhHHHHHHHHHHHHHHHHHH
Confidence                 11223466788999999998888888888778888888888 6654     699999999999999999999988


Q ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHh
Q 011783          333 SLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAAN  412 (477)
Q Consensus       333 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  412 (477)
                       +.+++.||+++|+.+..+..+..++++.+.+....     + . .....+.+++.+...+...++..+.+|++ ++++.
T Consensus       314 -~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~  384 (438)
T 3o7q_A          314 -TGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH-----V-G-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGS  384 (438)
T ss_dssp             -HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHH-----H-H-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHH
T ss_pred             -HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCc-----H-H-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchh
Confidence             89999999999999998888877776665544321     1 1 11223445666777888888888888866 89999


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCC-chHHHHHHHHHHHHHHHHHhh
Q 011783          413 GIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPG-SQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       413 g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      ++.. ...+|+.++|.+.|.+.+..          | ++..|++.+++.++..+..+.
T Consensus       385 ~~~~-~~~~g~~~~~~~~g~l~~~~----------g~~~~~~~~~~~~~~~~~~~~~~  431 (438)
T 3o7q_A          385 SFIV-MTIIGGGIVTPVMGFVSDAA----------GNIPTAELIPALCFAVIFIFARF  431 (438)
T ss_dssp             HHHH-HTTHHHHHHHHHHHHHHHHH----------TSSGGGGHHHHHHHHHHHHHHTT
T ss_pred             hHHH-HHHHHHHHHHHHHHHHHHHh----------cchHHHHHHHHHHHHHHHHHHHH
Confidence            8877 77899999999999999988          6 777888776665555544433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=9.4e-37  Score=299.23  Aligned_cols=419  Identities=13%  Similarity=0.061  Sum_probs=285.5

Q ss_pred             HHHHHHHhhhchhchHhHHHHHHHHhcccccc--hhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHH
Q 011783           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKRE--EDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (477)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~  123 (477)
                      ..++.++.++|.+.++..+|.+.++++.+...  ...+...|++.+++.+|..+|++++|+++||+|||+++.++.+++.
T Consensus        17 a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~   96 (491)
T 4gc0_A           17 ATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFF   96 (491)
T ss_dssp             HHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            34556777788899999999999988654322  2223448999999999999999999999999999999999999999


Q ss_pred             HHHHHHH------------------hhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHH
Q 011783          124 IFNTLFG------------------LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLI  184 (477)
Q Consensus       124 i~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~  184 (477)
                      +++++++                  +++|+++++++|+++|++.|...+. ..+++|+.|+++|++..+..+.+..+|.+
T Consensus        97 i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~  176 (491)
T 4gc0_A           97 ISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQL  176 (491)
T ss_dssp             HHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhh
Confidence            9999998                  4789999999999999999998887 99999999999999999999999999999


Q ss_pred             HHHhHHHHhhhccc-cCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchh--hhhhhhhhccc------
Q 011783          185 IGPALGGFLAQPAE-KYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVS--YDALESASAEV------  255 (477)
Q Consensus       185 ~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~------  255 (477)
                      +++.++..+..... .+....+|+..+..........+.....+||+|++...+.++++..  .++...+....      
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~  256 (491)
T 4gc0_A          177 LVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEI  256 (491)
T ss_dssp             HHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHH
Confidence            99999887765322 2333445555542222233444555667899988744333222211  11111100000      


Q ss_pred             h--hhcccCCchhhhhhcchhhHHHHHHHHHHHhhh-hhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHH
Q 011783          256 K--EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHD-MAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQL  332 (477)
Q Consensus       256 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~  332 (477)
                      +  .++.+........++.+..........+..... .....+.+....      ..+.+...........++..+++..
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  330 (491)
T 4gc0_A          257 KHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFK------TLGASTDIALLQTIIVGVINLTFTV  330 (491)
T ss_dssp             HHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHH------hcCCCccchhhHHHHHHHHHHHHHH
Confidence            0  001111112222333344333333333322222 222222222222      2566666666677777788888877


Q ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHh
Q 011783          333 SLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAAN  412 (477)
Q Consensus       333 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  412 (477)
                       +.+++.||+|||+.+..+.....++++.+.......... +..+....+....+..+..+..+.+.+|.+|++.|+++.
T Consensus       331 -~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~  408 (491)
T 4gc0_A          331 -LAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPG-IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKAL  408 (491)
T ss_dssp             -HHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHH
T ss_pred             -HHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHH
Confidence             889999999999999998888887776665544332222 222222223333444555677888999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhhhhhhccCC
Q 011783          413 GIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRHD  477 (477)
Q Consensus       413 g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (477)
                      |+.+..+++++++++.+.+.+.+........    +....|++.+++++++.+..++ ++||+|+
T Consensus       409 g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~----~~~~~~~i~~~~~~~~~i~~~~-~~PETkg  468 (491)
T 4gc0_A          409 AIAVAAQWLANYFVSWTFPMMDKNSWLVAHF----HNGFSYWIYGCMGVLAALFMWK-FVPETKG  468 (491)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHCHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHH-HCCCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHHh-eecCCCC
Confidence            9999999999999999988776543211100    4556888888888888887765 6888864

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=100.00  E-value=1e-34  Score=274.51  Aligned_cols=352  Identities=11%  Similarity=0.100  Sum_probs=268.3

Q ss_pred             HHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHH
Q 011783           44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (477)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~  123 (477)
                      ..+++..++..++.....+.+|.+.+++|.++.+      .+++.+++.++..++++++|+++||+|||+++..+.++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   76 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGA------VQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFM   76 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHH------HHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence            4567778888899999999999999999999999      9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhhccccCCc
Q 011783          124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN  202 (477)
Q Consensus       124 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~  202 (477)
                      ++.++.++++|++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+....+|..++|.+++++.+       
T Consensus        77 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-------  149 (375)
T 2gfp_A           77 LATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-------  149 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC-------
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------
Confidence            99999999999999999999999999998888 9999999999999999999999999999999999999987       


Q ss_pred             ccccccccccccchHHHHHHHH------HhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhcchhhH
Q 011783          203 LFSSESLFGKFPYFLPCLCISL------FAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLM  276 (477)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (477)
                      .++|+..+     ........+      ..+||+++++++                      +++.....++.+|+|.++
T Consensus       150 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~  202 (375)
T 2gfp_A          150 MWNWRACY-----LFLLVLCAGVTFSMARWMPETRPVDAP----------------------RTRLLTSYKTLFGNSGFN  202 (375)
T ss_dssp             HHHHHHHH-----HHHHHHHHHHHCCCCCSSCCCSTTTCC----------------------CCCTTTCSTHHHHHHHHH
T ss_pred             hccHHHHH-----HHHHHHHHHHHHHHHHHCcccCCCCcc----------------------cccHHHHHHHHhcCcchH
Confidence            45566555     111111111      122232211100                      111233566788889988


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH-H
Q 011783          277 SSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL-T  355 (477)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~  355 (477)
                      ...+..++.......+..+.|.|..+.     +|.++.+.+.......++.+++.. +.+++.||.+++  ...+... .
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~~-~~~~l~~r~~~~--~~~~~~~~~  274 (375)
T 2gfp_A          203 CYLLMLIGGLAGIAAFEACSGVLMGAV-----LGLSSMTVSILFILPIPAAFFGAW-FAGRPNKRFSTL--MWQSVICCL  274 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSCSSHHH-----HHHHHHHHHHHHHTHHHHHHHHHH-HHHTTTTHHHHH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHH
Confidence            888877777666666665555554432     788999999999999999999888 888888888762  2233322 2


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHH
Q 011783          356 IPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFS  435 (477)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  435 (477)
                      ..+...+...... .. ..........+.+++.+...+....+..|..| ++||++.|+.+....+|..++|.+.|.+.+
T Consensus       275 ~~~~~~~~~~~~~-~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  351 (375)
T 2gfp_A          275 LAGLLMWIPDWFG-VM-NVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQ  351 (375)
T ss_dssp             HTSSSSSHHHHHH-HH-HHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHH
T ss_pred             HHHHHHHHHhhhc-cc-cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            2222211111100 00 11223333344456667778888999999888 899999999999999999999999999987


Q ss_pred             HhhhhccccCCCCchHHHHHH
Q 011783          436 WAQKRLDASFLPGSQMVFFVL  456 (477)
Q Consensus       436 ~~~~~~~~~~~~g~~~~~~~~  456 (477)
                      ..          ++...+.+.
T Consensus       352 ~~----------~~~~~~~~~  362 (375)
T 2gfp_A          352 TG----------QGSLGLLMT  362 (375)
T ss_dssp             HH----------HHHHHHHHH
T ss_pred             CC----------cccHHHHHH
Confidence            66          566666554

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=100.00  E-value=2.1e-33  Score=275.32  Aligned_cols=398  Identities=12%  Similarity=0.073  Sum_probs=264.2

Q ss_pred             hHHHHHHHHHHHhhhchhchHhHHH-HHHHH-----hcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhh-cCCch
Q 011783           41 TELFSIWIIVLCTALPISSLFPFLY-FMIKD-----FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKP  113 (477)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~Grr~  113 (477)
                      +.++.+....+...++.....+.++ ++.++     +|.+..+      .+++.+++.++..++++++|+++|| +|||+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~   86 (491)
T 4aps_A           13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRAT------AASIMAIYASMVYLSGTIGGFVADRIIGARP   86 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence            4566677777777777776666665 55555     8999999      9999999999999999999999999 89999


Q ss_pred             hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhhccccc--hhhHHHHHHHHhHHHHHHHHhHH
Q 011783          114 VIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEH--QALGLSTVSTAWGIGLIIGPALG  190 (477)
Q Consensus       114 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~  190 (477)
                      ++..+.++.+++.+++++++|++.++++|+++|++.+...+. .++++|++|+++  |++++++++.+.++|..++|.++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  166 (491)
T 4aps_A           87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV  166 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998887 999999999988  77888889999999999999999


Q ss_pred             HHhhhccccCCcccccccccccccchHHHHHHHHH-hhccccccCCCCCCccchhhhhhhhhhc----------------
Q 011783          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLF-AFGETLHRHNDDDDSCDVSYDALESASA----------------  253 (477)
Q Consensus       191 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------  253 (477)
                      +.+.+       .++|+..|..........++..+ ..++..+++..++++.+.. ++.++..+                
T Consensus       167 ~~l~~-------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~~  238 (491)
T 4aps_A          167 GAAQE-------AAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAP-EEVKPLLVKVSLAVAGFIAIIVVM  238 (491)
T ss_dssp             HHHHH-------HSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSH-HHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred             HHHHh-------hhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCcccc-chhHHHHHHHHHHHHHHHHHHHHH
Confidence            99988       44555555211111111111111 2222222111111111000 00000000                


Q ss_pred             ------cchh-------------------hcccCCchhhhhhcchhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCc
Q 011783          254 ------EVKE-------------------EEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGG  308 (477)
Q Consensus       254 ------~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (477)
                            +.++                   ..++......+..+....+...+...+...........++.|..+.     
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  313 (491)
T 4aps_A          239 NLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAER-----  313 (491)
T ss_dssp             HHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHS-----
T ss_pred             HhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH-----
Confidence                  0000                   0000001111111222233344444444444455556666666543     


Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH-----HHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHH
Q 011783          309 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR-----IAGVLTIPLLTSYPYIAMLS---GFGLAFLLNCA  380 (477)
Q Consensus       309 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  380 (477)
                      .+.+..+.+.......+..+++.. +.+++.||++||+...     .+..+..+++..+.......   .........+.
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (491)
T 4aps_A          314 VDSSWFPVSWFQSLNPLFIMLYTP-FFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGS  392 (491)
T ss_dssp             CCCSSSCSGGGTTHHHHHHHHHHH-HHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHH
T ss_pred             hccCccCHHHHhccchHHHHHHHH-HHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHH
Confidence            455556677777778888888877 7889999999876544     56666666655554433110   00111223334


Q ss_pred             HHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHH
Q 011783          381 SVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVE  460 (477)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~  460 (477)
                      ..+.+++.....+....+..|.+|++.|+++.|+.+....+|.+++|.+.+.+.+.           ++...|.+.++++
T Consensus       393 ~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-----------~~~~~~~~~~~~~  461 (491)
T 4aps_A          393 WALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-----------SEVAYFSYFGLGS  461 (491)
T ss_dssp             HHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-----------STTHHHHHTHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------cHHHHHHHHHHHH
Confidence            44455666677788899999999999999999999999999999999998877543           5667777777777


Q ss_pred             HHHHHHHhh
Q 011783          461 AIGVLMTFK  469 (477)
Q Consensus       461 ~~~~~~~~~  469 (477)
                      +++.++.+.
T Consensus       462 ~~~~~~~~~  470 (491)
T 4aps_A          462 VVLGIVLVF  470 (491)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            776665544

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=100.00  E-value=9.6e-32  Score=257.39  Aligned_cols=384  Identities=12%  Similarity=0.091  Sum_probs=250.7

Q ss_pred             hhHHHHHHHHHHHhhhchhchHhHHHHH-HHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHH
Q 011783           40 ITELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (477)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~  118 (477)
                      .+.++.+....++..+......+.+|.+ .+++|.++.+      .|++.+++.++..++++++|+++||+|||++++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~   79 (417)
T 2cfq_A            6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSD------TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWI   79 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTT------SHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            3556666666677777777778888864 5569999999      99999999999999999999999999999999998


Q ss_pred             HHHHHHHHH---HHHhhhhHH-HHHHHHHHhhhcccchhhH-HHHhhhhccc--cchhhHHHHHHHHhHHHHHHHHhHHH
Q 011783          119 TASVVIFNT---LFGLSVNFW-MAVLTRFLLGSLNGLLGPI-KAYACEIFRE--EHQALGLSTVSTAWGIGLIIGPALGG  191 (477)
Q Consensus       119 ~~~~~i~~~---~~~~~~~~~-~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~  191 (477)
                      ..+.++...   ...+++... .++..+.+.|++.+...+. ...+.++.++  ++|+...+.......+|..++|.+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~  159 (417)
T 2cfq_A           80 ITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG  159 (417)
T ss_dssp             HHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHH
Confidence            887765322   223333221 2455677777766654443 4444455443  45677788888889999999999999


Q ss_pred             HhhhccccCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhc
Q 011783          192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK  271 (477)
Q Consensus       192 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (477)
                      ++.+.  +|++.+....+      ......+.....++.+++.. ++++.++            +++++......++++|
T Consensus       160 ~l~~~--~~~~~f~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~------------~~~~~~~~~~~~~~~~  218 (417)
T 2cfq_A          160 IMFTI--NNQFVFWLGSG------CALILAVLLFFAKTDAPSSA-TVANAVG------------ANHSAFSLKLALELFR  218 (417)
T ss_dssp             HHHHH--CSHHHHTTTTT------TTTTHHHHSCSSCCCCSCSS-CSSSSSS------------SCCCCCCHHHHHHHTT
T ss_pred             HHHHh--chhHHHHHHHH------HHHHHHHHHHHcCccccccc-ccccccc------------cccccccHHHHHHHhc
Confidence            98762  34444332111      11122222222232211110 0000000            0001111224567888


Q ss_pred             chhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 011783          272 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA  351 (477)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  351 (477)
                      +|.++...+..+........+..++|.|+.+..  +..+.+....+...+...++.+++.. +.+++.||++||+.+..+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~g~~~~l~~~  295 (417)
T 2cfq_A          219 QPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFF--ATGEQGTRVFGYVTTMGELLNASIMF-FAPLIINRIGGKNALLLA  295 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--SSHHHHTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHhcHHHHHHHH
Confidence            898887666555444444445555676664321  11233455667888888888888877 899999999999998887


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHH-HHHHHHHHHHhhhHH
Q 011783          352 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIA-MTGMSLFKAAGPAGG  430 (477)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~~~~~~~  430 (477)
                      ..+..+..+.+.+..   +  .+ .+.+...+.++......+....+..|.+|++.||++.+.. +....+|++++|.+.
T Consensus       296 ~~~~~~~~~~~~~~~---~--~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~  369 (417)
T 2cfq_A          296 GTIMSVRIIGSSFAT---S--AL-EVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA  369 (417)
T ss_dssp             HHHHHHHHHHHTTCC---S--HH-HHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHhc---c--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhH
Confidence            777666655443321   1  11 1222222233344445556678899999999999999994 788899999999999


Q ss_pred             HHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          431 GALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       431 g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      |.+.+..          |+...|.+.+++++++.++.+.
T Consensus       370 G~l~~~~----------g~~~~f~~~~~~~l~~~~~~~~  398 (417)
T 2cfq_A          370 GNMYESI----------GFQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HTHHHHS----------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhc----------CcHHHHHHHHHHHHHHHHHHHh
Confidence            9999876          7778898888888888776554

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.96  E-value=8.8e-29  Score=244.53  Aligned_cols=405  Identities=11%  Similarity=0.079  Sum_probs=235.3

Q ss_pred             HHHHHHHHHHHhhhchhchHhHHH-HHHHHhc------ccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhc-CCch
Q 011783           42 ELFSIWIIVLCTALPISSLFPFLY-FMIKDFQ------IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKP  113 (477)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-Grr~  113 (477)
                      .++.+.+..++..+..+...+.++ ++.+++|      .+..+      .|++.+++.++..++++++|+++||+ |||+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~   86 (524)
T 2xut_A           13 QIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAV------AKDVFHSFVIGVYFFPLLGGWIADRFFGKYN   86 (524)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTT------HHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence            344566677777777776777776 5667799      99999      99999999999999999999999999 9999


Q ss_pred             hhHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHH---HHHHhHHHHHHHHh
Q 011783          114 VIIMGTASVVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLST---VSTAWGIGLIIGPA  188 (477)
Q Consensus       114 ~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~g~~  188 (477)
                      ++.++.++.+++.+++++++ +++.+++.|++.|++.+...+. .+++.|++|+++|+++.+.   .+...++|..+||.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~  166 (524)
T 2xut_A           87 TILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASL  166 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999 9999999999999999998887 9999999999999876666   89999999999999


Q ss_pred             HHHHhhhccccCCcccccccccccccchHHHHHHHHHhhccccccCC--CCCCccchhhhh----hhhhhc--cc-----
Q 011783          189 LGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHN--DDDDSCDVSYDA----LESASA--EV-----  255 (477)
Q Consensus       189 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~----~~~~~~--~~-----  255 (477)
                      +++.+.+       .++|+..|.......  ++..+......++..+  +++++.....+.    .++...  +.     
T Consensus       167 ~~~~l~~-------~~g~~~~f~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (524)
T 2xut_A          167 SMPLLLK-------NFGAAVAFGIPGVLM--FVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVL  237 (524)
T ss_dssp             TSTHHHH-------TSCHHHHHHHHHHHH--HHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHH
T ss_pred             HHHHHhc-------cccHHHHHHHHHHHH--HHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhh
Confidence            9999987       345655552111111  1111111111111111  000000000000    000000  00     


Q ss_pred             -------------------------------hhhcccCC----------chhhhhhcchhhHHHHHHH---HHHHhhhhh
Q 011783          256 -------------------------------KEEEGREA----------TPKKSLLKNWPLMSSIIVY---CVFSLHDMA  291 (477)
Q Consensus       256 -------------------------------~~~~~~~~----------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  291 (477)
                                                     .+++.+.+          ....+..+.+..+......   .++......
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (524)
T 2xut_A          238 ALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQ  317 (524)
T ss_dssp             HHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSS
T ss_pred             hhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                                           00000000          0000011112222111111   111111111


Q ss_pred             hHHHHHHhhcCcccCCccccch-hhhHHHHHHHHHHHHHHHHHHHHHHH----Hhhc----chhHHHHHHHHHHHHHHHH
Q 011783          292 YSEIFSLWANSPKKLGGLNYST-QMVGEVLAITGFSLLVFQLSLYPFLE----RILG----PIMVARIAGVLTIPLLTSY  362 (477)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~g~~~-~~~g~~~~~~~~~~~~~~~~~~~~l~----~~~~----~~~~~~~~~~~~~~~~~~~  362 (477)
                      ....++.+...      .+.+. ...+.+.....++.++... +.+++.    +|.+    +++.+..+..+..++++.+
T Consensus       318 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  390 (524)
T 2xut_A          318 KASTWILQAND------MVKPQWFEPAMMQALNPLLVMLLIP-FNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVV  390 (524)
T ss_dssp             TTTHHHHHHHH------SCCCSSSCHHHHHTTSGGGHHHHGG-GTTTC------------CCHHHHHTHHHHHHHHHHTT
T ss_pred             cchhhHHhHHh------cCCCeeecHHHHHHHHHHHHHHhHH-HHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHH
Confidence            12222222211      11111 1345555554455555544 333321    3332    2345556666666665554


Q ss_pred             HHHHHhh---hhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 011783          363 PYIAMLS---GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQK  439 (477)
Q Consensus       363 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~  439 (477)
                      .......   .......+....++.+++.+...+....+..+.+|++.||+++|+.+....+|+.++|.+.|.+.+....
T Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~  470 (524)
T 2xut_A          391 GTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVT  470 (524)
T ss_dssp             TTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            4432100   0011112333445556777778888889999999999999999999999999999999999988763210


Q ss_pred             hc-cccCCCCc-hHHHHHHHHHHHHHHHHHhh
Q 011783          440 RL-DASFLPGS-QMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       440 ~~-~~~~~~g~-~~~~~~~~~~~~~~~~~~~~  469 (477)
                      .. ..... +. ...|++.+++++++.++.+.
T Consensus       471 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  501 (524)
T 2xut_A          471 EQIVQTGM-SVTAFQMFFFAGFAILAAIVFAL  501 (524)
T ss_dssp             HHHHHHHS-CHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             cccccccc-cccccHHHHHHHHHHHHHHHHHH
Confidence            00 00000 11 23366677776666665543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.53  E-value=3.9e-13  Score=129.66  Aligned_cols=176  Identities=9%  Similarity=0.026  Sum_probs=136.1

Q ss_pred             hhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 011783          273 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  352 (477)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  352 (477)
                      +.+....+..++.......+....|.+..+      + .+..+.|++.+...++..++++ ..+++.||+|||+.+..+.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~s~~~~g~~~~~~~~~~~~~~~-~~G~l~dr~g~r~~l~~~~   99 (451)
T 1pw4_A           28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQ------G-FSRGDLGFALSGISIAYGFSKF-IMGSVSDRSNPRVFLPAGL   99 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHHTTSS------T-TCSSCHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------h-ccHhHHHHHHHHHHHHHHHHHH-hHHHHHHhcCchHHHHHHH
Confidence            334444445555554445555555554433      7 8899999999999999999998 8999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHH
Q 011783          353 VLTIPLLTSYPYIAM-LSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGG  431 (477)
Q Consensus       353 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g  431 (477)
                      ++..++.+...+... ..+   ...+.+..++.+++.+...+...+++.|.+|+++|++++|+.+....+|..++|.+++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  176 (451)
T 1pw4_A          100 ILAAAVMLFMGFVPWATSS---IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL  176 (451)
T ss_dssp             HHHHHHHHHHHHCHHHHSS---SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccc---HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            998888877766221 111   1134444556677788888999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhccccCCCC-chHHHHHHHHHHHHHHHHHhh
Q 011783          432 ALFSWAQKRLDASFLPG-SQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       432 ~l~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      .+.+..          | |+..|++.+++.++..++..+
T Consensus       177 ~l~~~~----------g~w~~~f~~~~~~~~~~~~~~~~  205 (451)
T 1pw4_A          177 LGMAWF----------NDWHAALYMPAFCAILVALFAFA  205 (451)
T ss_dssp             HHHHHT----------CCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHh----------ccHHHHHHHHHHHHHHHHHHHHh
Confidence            988876          7 999999988887776655443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.49  E-value=1.9e-12  Score=126.37  Aligned_cols=180  Identities=16%  Similarity=0.078  Sum_probs=143.3

Q ss_pred             hhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHH
Q 011783          273 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-LGPIMVARIA  351 (477)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~  351 (477)
                      +.++......++..+.......+.+.|+.+....+++|.+..+.+++.+...++..++++ +.+++.|| +|||+.+..+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~~g~r~~~~~~   91 (491)
T 4aps_A           13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGT-IGGFVADRIIGARPAVFWG   91 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTSCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhccccchHHHHHH
Confidence            345566666666666666777777777765433445899999999999999999999998 99999999 8999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcch--hhHHhHHHHHHHHHHHHHhhhH
Q 011783          352 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQ--RGAANGIAMTGMSLFKAAGPAG  429 (477)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~g~~~~~~~  429 (477)
                      .++..++.+...+..+.      ..+.+..++.+++.+...+...+++.|.+|+++  |+++.+..+....+|..++|.+
T Consensus        92 ~~~~~~~~~~~~~~~~~------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  165 (491)
T 4aps_A           92 GVLIMLGHIVLALPFGA------SALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLI  165 (491)
T ss_dssp             HHHHHHHHHHHHSCCST------THHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHH
Confidence            98888887766554321      133344455567778888999999999999988  7888888999999999999999


Q ss_pred             HHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          430 GGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       430 ~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      ++.+.+..          ||+..|++.++..+++.++...
T Consensus       166 ~~~l~~~~----------g~~~~f~~~~~~~~~~~~~~~~  195 (491)
T 4aps_A          166 VGAAQEAA----------GYHVAFSLAAIGMFIGLLVYYF  195 (491)
T ss_dssp             HHHHHHHS----------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhh----------hHHHHHHHHHHHHHHHHHHHHH
Confidence            99999877          8999999988877777666543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.49  E-value=1.4e-12  Score=125.35  Aligned_cols=180  Identities=9%  Similarity=-0.004  Sum_probs=130.2

Q ss_pred             HHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 011783          280 IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLL  359 (477)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  359 (477)
                      ...++............|.+..      ++|.+..+.|++.+...++..++++ ..+++.||+|||+.+..+..+..++.
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~------~~g~s~~~~g~~~~~~~~~~~i~~~-~~G~l~dr~g~r~~l~~~~~~~~~~~  105 (438)
T 3o7q_A           33 SLFFLWAVANNLNDILLPQFQQ------AFTLTNFQAGLIQSAFYFGYFIIPI-PAGILMKKLSYKAGIITGLFLYALGA  105 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH------HSCCCSHHHHHHHHHHHHHHHTTHH-HHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHH------HcCCCHHHHHHHHHHHHHHHHHHHH-hHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            3333333333444444554433      3899999999999999999999998 89999999999999999999888887


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHH-HHhh
Q 011783          360 TSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALF-SWAQ  438 (477)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~-~~~~  438 (477)
                      ++........+   ...+.+..++.+++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+++.+. +...
T Consensus       106 ~~~~~~~~~~~---~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  182 (438)
T 3o7q_A          106 ALFWPAAEIMN---YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP  182 (438)
T ss_dssp             HHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred             HHHHhcccccc---HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            77633222111   2234455566678888889999999999999999999999999999999999999999998 3331


Q ss_pred             hhc------------ccc---CCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          439 KRL------------DAS---FLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       439 ~~~------------~~~---~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      ...            ..+   ...+|++.|++.+++.++..++..+
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  228 (438)
T 3o7q_A          183 HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML  228 (438)
T ss_dssp             CCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            000            000   0001788887777766666555544

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.42  E-value=5.2e-13  Score=127.31  Aligned_cols=112  Identities=16%  Similarity=0.071  Sum_probs=99.0

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhh
Q 011783           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI  162 (477)
Q Consensus        84 ~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~  162 (477)
                      .++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+. ..+++|.
T Consensus       261 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  340 (417)
T 2cfq_A          261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ  340 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            688888888899999999999999999999999999888888888888888888888888888876666665 8899999


Q ss_pred             ccccchhhHHHH-HHHHhHHHHHHHHhHHHHhhh
Q 011783          163 FREEHQALGLST-VSTAWGIGLIIGPALGGFLAQ  195 (477)
Q Consensus       163 ~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~  195 (477)
                      +|++.|+++.+. ++....+|..++|.++|.+.+
T Consensus       341 ~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~  374 (417)
T 2cfq_A          341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE  374 (417)
T ss_dssp             SCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH
Confidence            999999999998 588888999999999999887

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.40  E-value=2.3e-12  Score=121.05  Aligned_cols=171  Identities=16%  Similarity=0.079  Sum_probs=134.0

Q ss_pred             HHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 011783          280 IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLL  359 (477)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  359 (477)
                      ...++.......+....|.+..      ++|.++.+.++..+...++..++++ ..+++.||+|||+.+..+..+..++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~------~~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~~~~~~   79 (375)
T 2gfp_A            7 LLVAVGQMAQTIYIPAIADMAR------DLNVREGAVQSVMGAYLLTYGVSQL-FYGPISDRVGRRPVILVGMSIFMLAT   79 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT------TSSSTTHHHHHHHHHHHHHHHHHHT-THHHHHTTSCCCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHH------HcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCchhHHHHHHHHHHHH
Confidence            3344444444444455554443      3899999999999999999999998 89999999999999999998888887


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 011783          360 TSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQK  439 (477)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~  439 (477)
                      .......+      ...+....++.+++.+...+...+++.|..|+++|+++++..+....+|..++|.+++.+.+..  
T Consensus        80 ~~~~~~~~------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--  151 (375)
T 2gfp_A           80 LVAVTTSS------LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW--  151 (375)
T ss_dssp             HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH--
T ss_pred             HHHHHhcc------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc--
Confidence            77766543      2234445556677778888999999999999999999999999999999999999999998776  


Q ss_pred             hccccCCCCchHHHHHHHHHHHHHHHHHhhhhhhc
Q 011783          440 RLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQ  474 (477)
Q Consensus       440 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (477)
                              +|+..|.+.+++.++..+.... ..||
T Consensus       152 --------~~~~~~~~~~~~~~~~~~~~~~-~~~~  177 (375)
T 2gfp_A          152 --------NWRACYLFLLVLCAGVTFSMAR-WMPE  177 (375)
T ss_dssp             --------HHHHHHHHHHHHHHHHHCCCCC-SSCC
T ss_pred             --------cHHHHHHHHHHHHHHHHHHHHH-HCcc
Confidence                    7889999888877776654333 3444

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.39  E-value=9.5e-12  Score=122.47  Aligned_cols=174  Identities=10%  Similarity=0.013  Sum_probs=136.7

Q ss_pred             hhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccc------cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-cch
Q 011783          273 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLN------YSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-GPI  345 (477)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~~  345 (477)
                      +.++...+..++..........+++.|+.+.     +|      +++.+.+.+.+...++..++.+ ..+++.||+ |||
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~-~~G~l~dr~~g~r   85 (524)
T 2xut_A           12 RQIPYIIASEACERFSFYGMRNILTPFLMTA-----LLLSIPEELRGAVAKDVFHSFVIGVYFFPL-LGGWIADRFFGKY   85 (524)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CSSCCSSSTTTTTHHHHHHHHHHHHHHTHH-HHHHHHTTSSCSH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hccccccccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcch
Confidence            4555566666666666666777777776543     56      9999999999999999999988 899999999 999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHH---HHHHHHH
Q 011783          346 MVARIAGVLTIPLLTSYPYIA-MLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGI---AMTGMSL  421 (477)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~---~~~~~~~  421 (477)
                      +.+..+.++..++.+...+.. +      ...+.+..++.+++.+...+...+++.|.+|+++|+++.+.   .+....+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~  159 (524)
T 2xut_A           86 NTILWLSLIYCVGHAFLAIFEHS------VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINF  159 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSC------HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccc------HHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHH
Confidence            999998888887777665543 2      11333444555677788889999999999999999877666   8888999


Q ss_pred             HHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHh
Q 011783          422 FKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF  468 (477)
Q Consensus       422 g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  468 (477)
                      |..++|.+.+.+.+..          ||+..|++.+++.+++.++..
T Consensus       160 g~~~g~~~~~~l~~~~----------g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          160 GSFFASLSMPLLLKNF----------GAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             HHHHHHHTSTHHHHTS----------CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccc----------cHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998876          899999988888777666544

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.25  E-value=1.2e-11  Score=120.75  Aligned_cols=147  Identities=14%  Similarity=0.139  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHH
Q 011783           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (477)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~  122 (477)
                      ........+........+....|.+.++.+.+...      .........+...++.++.+++.||+|||+.++.+....
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~  352 (491)
T 4gc0_A          279 VIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDI------ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGM  352 (491)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccc------hhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHH
Confidence            33444444555556666667778888888887776      677777788888999999999999999999999998888


Q ss_pred             HHHHHHHHhhh-----hHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHHHhhh
Q 011783          123 VIFNTLFGLSV-----NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (477)
Q Consensus       123 ~i~~~~~~~~~-----~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  195 (477)
                      .++.+..+...     +...++..-+..+.......+. ..+.+|.+|.+.|++++|+......+|..+++.+.+.+.+
T Consensus       353 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~  431 (491)
T 4gc0_A          353 AIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDK  431 (491)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCH
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88776655431     2222222222222222234455 8899999999999999999999999999999888777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	477
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	3e-13
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	2e-09

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 68.9 bits (167), Expect = 3e-13
 Identities = 47/391 (12%), Positives = 96/391 (24%), Gaps = 29/391 (7%)

Query: 84  AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF 143
            G+  S        +    G V+DR   +  +  G           G       ++   F
Sbjct: 61  LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMF 120

Query: 144 LLGSLNGLLGPIKAYAC-----EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE 198
           +L  L G    +    C       + ++ +   +S  + A  +G  I P L         
Sbjct: 121 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 180

Query: 199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEE 258
            +              +    + +  FA      +        +   D  +  + + ++E
Sbjct: 181 DWHAALYM------PAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQE 234

Query: 259 EGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGE 318
              +    + +L N  L    I      L      +    +    K       S      
Sbjct: 235 LTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY 294

Query: 319 VLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLN 378
             A    +LL   +S   F        +       +   +    P            ++ 
Sbjct: 295 EYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG 354

Query: 379 CASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKA-AGPAGGGALFSWA 437
                        +  + +       +   G A G       L  + A  A  G    + 
Sbjct: 355 FL-------IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF 407

Query: 438 QKRLDASFLPGSQMVFFVLNVVEAIGVLMTF 468
                     G    F V+     + V++  
Sbjct: 408 ----------GWDGGFMVMIGGSILAVILLI 428

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 56.7 bits (135), Expect = 2e-09
 Identities = 47/429 (10%), Positives = 105/429 (24%), Gaps = 41/429 (9%)

Query: 42  ELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSV 100
             +   +        + + FPF   ++     I+       S  G + ++      L   
Sbjct: 8   NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHIS------KSDTGIIFAAISLFSLLFQP 61

Query: 101 FWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYAC 160
            +GL++D+ G +  ++     +++    F + +   +      +   + G+       A 
Sbjct: 62  LFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAG 121

Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL 220
               E          +  +G   + G       A        + +    +      L   
Sbjct: 122 APAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILA 181

Query: 221 CISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSII 280
            +  FA  +        +           +  +    +   E   +  L      +  + 
Sbjct: 182 VLLFFAKTDAPSSATVANAV--------GANHSAFSLKLALELFRQPKLWFLSLYVIGVS 233

Query: 281 VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLER 340
                     A                    +T       +I  F+ L+           
Sbjct: 234 CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALL 293

Query: 341 ILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQN 400
           + G IM  RI G            +  L  F + F               ++ G F    
Sbjct: 294 LAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPF---------------LLVGCFKYIT 338

Query: 401 RAVDQDQRGAANGIAMT-GMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVV 459
              +         +       L         G ++             G Q  + VL +V
Sbjct: 339 SQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI----------GFQGAYLVLGLV 388

Query: 460 EAIGVLMTF 468
                L++ 
Sbjct: 389 ALGFTLISV 397

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	477
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.47
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.44

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-39  Score=313.66  Aligned_cols=403  Identities=11%  Similarity=0.025  Sum_probs=293.0

Q ss_pred             CCchhHHHHHHHHHHHhhhchhchHhHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhH
Q 011783           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (477)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~  116 (477)
                      +.+|..+..++++.+..+++...++...|.+. |+|.|.+|      .|++.+++.+++.++++++|+++||+|||+++.
T Consensus        21 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~   93 (447)
T d1pw4a_          21 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLP   93 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence            34455566677777888888888888888765 68999999      999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhh----hHHHHHHHHHHhhhcccchhhH-HHHhhhhccccchhhHHHHHHHHhHHHHHHHHhHHH
Q 011783          117 MGTASVVIFNTLFGLSV----NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG  191 (477)
Q Consensus       117 ~~~~~~~i~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  191 (477)
                      ++.++.+++.+++++++    +++.+++.|++.|++.|...+. .++++|++|+++|++++++.+.+..+|..++|.+++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  173 (447)
T d1pw4a_          94 AGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL  173 (447)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred             HHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhh
Confidence            99999999999988764    6788999999999999988887 999999999999999999999999999999999999


Q ss_pred             HhhhccccCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhc
Q 011783          192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK  271 (477)
Q Consensus       192 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (477)
                      .+.....+||+.+......     .....++....+++.++.....+.+..+. +..++..++.+++........+..++
T Consensus       174 ~~~~~~~~w~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (447)
T d1pw4a_         174 LGMAWFNDWHAALYMPAFC-----AILVALFAFAMMRDTPQSCGLPPIEEYKN-DYPDDYNEKAEQELTAKQIFMQYVLP  247 (447)
T ss_dssp             HHHHHTCCSTTCTHHHHHH-----HHHHHHHHHHHCCCSSTTTCCCSCTTTCC-C-------------CCTHHHHHHTSS
T ss_pred             hHhhhhhcccccchhhhhh-----HHHHHHHHHHhcccchhhcccchhhhhhh-hcccchhhccccccchhhHHHHHHHc
Confidence            8887656666655432221     22233333444445544332221111110 11111111111122233345667888


Q ss_pred             chhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 011783          272 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA  351 (477)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  351 (477)
                      ++.++......++..........+.+.|+.+.     .+++..+.+.......+..+++.+ +.+++.||.++++.....
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~  321 (447)
T d1pw4a_         248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGTL-LCGWMSDKVFRGNRGATG  321 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB-----SCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTSTTCHHHHH
T ss_pred             CchHHHHHHHhhhhhhhhhcchhhhhhhcccc-----cccccchhhhhhhcchhhhhhhhh-hhhhhhhhcccccccccc
Confidence            99998888888887777778888888877654     789999999999999999999988 899999999877655444


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHH-HHHHhhhHH
Q 011783          352 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSL-FKAAGPAGG  430 (477)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~~~~~~  430 (477)
                      .....+.............. ......+..++.+++.....+....+..|.+|++.||++.|+.+...++ |..++|.+.
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~  400 (447)
T d1pw4a_         322 VFFMTLVTIATIVYWMNPAG-NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV  400 (447)
T ss_dssp             HHHHHHHHHHHHHTTSCCTT-CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43333322222221111111 1223333334445666677788888999999999999999999998887 456789999


Q ss_pred             HHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          431 GALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       431 g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      |.+.+..          |++..|++.+++++++.++...
T Consensus       401 g~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~  429 (447)
T d1pw4a_         401 GYTVDFF----------GWDGGFMVMIGGSILAVILLIV  429 (447)
T ss_dssp             HHHHHSS----------CSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHh----------ChHHHHHHHHHHHHHHHHHHHH
Confidence            9999988          8888888887777776665544

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.8e-30  Score=245.86  Aligned_cols=384  Identities=11%  Similarity=0.089  Sum_probs=260.9

Q ss_pred             hhHHHHHHHHHHHhhhchhchHhHHHH-HHHHhcccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHH
Q 011783           40 ITELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (477)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~  118 (477)
                      .|.++.+.+..++..+..+...|.+|. +.+++|.|+.+      +|++.+++.+++.++++++|+++||+|||++++++
T Consensus         6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~------~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~   79 (417)
T d1pv7a_           6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSD------TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWI   79 (417)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH------HHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence            467888888889999999999999995 56779999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHH----HHHHHHhhhcccchhh-HHHHhhhhcc--ccchhhHHHHHHHHhHHHHHHHHhHHH
Q 011783          119 TASVVIFNTLFGLSVNFWMA----VLTRFLLGSLNGLLGP-IKAYACEIFR--EEHQALGLSTVSTAWGIGLIIGPALGG  191 (477)
Q Consensus       119 ~~~~~i~~~~~~~~~~~~~l----~~~r~l~G~~~g~~~~-~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~~~~  191 (477)
                      ..+..++..+..+..+....    ++.+.+.+.+.+.... ......+..+  .+++.+..+........+..++|.+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (417)
T d1pv7a_          80 ITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG  159 (417)
T ss_dssp             HHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccc
Confidence            99999998888887665544    4455555555444333 3333333332  245566777888889999999999999


Q ss_pred             HhhhccccCCcccccccccccccchHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhccchhhcccCCchhhhhhc
Q 011783          192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK  271 (477)
Q Consensus       192 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (477)
                      .+.+.       .++...+..............+..++.+...++++++.+..              +........+..+
T Consensus       160 ~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~  218 (417)
T d1pv7a_         160 IMFTI-------NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANH--------------SAFSLKLALELFR  218 (417)
T ss_dssp             HHHHH-------CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCC--------------CCCCHHHHHHHTT
T ss_pred             ccccc-------cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhc--------------ccccccccccccc
Confidence            98872       11211110111112222222233333333222211111100              1111222333444


Q ss_pred             chhhHHHHHHHHHHHhhhhhhHHHHHHhhcCcccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 011783          272 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA  351 (477)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  351 (477)
                      ++..+......................+...  .....+.+....+.......++..++.. +.+++.||.++++.+..+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~r~~~~~~~~~~  295 (417)
T d1pv7a_         219 QPKLWFLSLYVIGVSCTYDVFDQQFANFFTS--FFATGEQGTRVFGYVTTMGELLNASIMF-FAPLIINRIGGKNALLLA  295 (417)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHCHHHHHHHH
T ss_pred             cccccchhhhhHHHHHHHHhhhccccccccc--cccccccchhhhcccccccccccccchh-hhhhhhcccccccchhhh
Confidence            4444444333333333333333333333322  2233566677778888888888888887 899999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhHHHHhHHHHHHhhcCCcchhhHHhHHHH-HHHHHHHHHhhhHH
Q 011783          352 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAM-TGMSLFKAAGPAGG  430 (477)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~~~~~~~  430 (477)
                      ..+..+..+.+.+..+      .....+...+.+++.+...+...++.+|.+|++.|+++.|+.. ....+|..++|.+.
T Consensus       296 ~~~~~~~~~~~~~~~~------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~  369 (417)
T d1pv7a_         296 GTIMSVRIIGSSFATS------ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA  369 (417)
T ss_dssp             HHHHHHHHHHHHTCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccccccc------cchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888777776655432      1133344445567777888999999999999999999999864 56779999999999


Q ss_pred             HHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 011783          431 GALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK  469 (477)
Q Consensus       431 g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  469 (477)
                      |++.|..          |++.+|++.+++.++..++..+
T Consensus       370 G~l~~~~----------g~~~~~~~~~~~~~~~~~~~~~  398 (417)
T d1pv7a_         370 GNMYESI----------GFQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHHHHHH----------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH----------CHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998          8889999988888877776655

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=1.4e-14  Score=135.39  Aligned_cols=120  Identities=15%  Similarity=0.073  Sum_probs=109.3

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcccchhhH-HHHhhhh
Q 011783           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI  162 (477)
Q Consensus        84 ~g~~~s~~~~~~~~~~~~~G~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~  162 (477)
                      .+...+...++..++..+.+++.||+|||+.+..+.++.+++.++..+.++.+.+++..++.|++.+...+. .+++.|.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  340 (417)
T d1pv7a_         261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ  340 (417)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788888899999999999999999999999999999999999999999999999999999999998888887 9999999


Q ss_pred             ccccchhhHHHHH-HHHhHHHHHHHHhHHHHhhhccccCCccccccccc
Q 011783          163 FREEHQALGLSTV-STAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF  210 (477)
Q Consensus       163 ~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~  210 (477)
                      +|+++|+++.+.. +....+|..++|.++|++.+       .++++..+
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~-------~~g~~~~~  382 (417)
T d1pv7a_         341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE-------SIGFQGAY  382 (417)
T ss_dssp             SCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-------HHCHHHHH
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCHHHHH
Confidence            9999999999975 56778999999999999998       55665554

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=3.1e-12  Score=120.80  Aligned_cols=149  Identities=8%  Similarity=-0.002  Sum_probs=120.6

Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh
Q 011783          309 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS  388 (477)
Q Consensus       309 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (477)
                      .|+|..+.|++.+...++..++++ +.|++.||+|||+.+..+.++..++.++..+.......  ...+.+..++.+++.
T Consensus        54 ~g~s~~~~g~~~s~~~~~~~~~~~-~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~  130 (447)
T d1pw4a_          54 QGFSRGDLGFALSGISIAYGFSKF-IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS--IAVMFVLLFLCGWFQ  130 (447)
T ss_dssp             STTCSSCHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSS--SSHHHHHHHHHHHHH
T ss_pred             hCcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhh--HHHHHHHHHHHHHhh
Confidence            799999999999999999999998 99999999999999999999888887776655432211  123444445556777


Q ss_pred             HHHHhHHHHHHhhcCCcchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhhccccCCCCchHHHHHHHHHHHHHHHHHh
Q 011783          389 VSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF  468 (477)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  468 (477)
                      +...+....++.+.+|+++|++++|+.+....+|..++|.+.+.+.+..         .+|+..|++.+.+.++..++.+
T Consensus       131 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~---------~~w~~~~~~~~~~~~~~~~~~~  201 (447)
T d1pw4a_         131 GMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF---------NDWHAALYMPAFCAILVALFAF  201 (447)
T ss_dssp             HHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT---------CCSTTCTHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh---------hcccccchhhhhhHHHHHHHHH
Confidence            8888899999999999999999999999999999999999988887765         2677788877777666655544


Q ss_pred             h
Q 011783          469 K  469 (477)
Q Consensus       469 ~  469 (477)
                      .
T Consensus       202 ~  202 (447)
T d1pw4a_         202 A  202 (447)
T ss_dssp             H
T ss_pred             H
Confidence            4