Citrus Sinensis ID: 011791
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 477 | 2.2.26 [Sep-21-2011] | |||||||
| O80763 | 578 | Probable nucleoredoxin 1 | yes | no | 1.0 | 0.825 | 0.658 | 0.0 | |
| Q7Y0F2 | 581 | Probable nucleoredoxin 1- | yes | no | 0.995 | 0.817 | 0.586 | 1e-166 | |
| Q7Y0E8 | 569 | Probable nucleoredoxin 1- | yes | no | 0.989 | 0.829 | 0.586 | 1e-165 | |
| Q8VZQ0 | 392 | Probable nucleoredoxin 3 | no | no | 0.769 | 0.936 | 0.409 | 1e-81 | |
| Q0JIL1 | 394 | Probable nucleoredoxin 2 | no | no | 0.744 | 0.901 | 0.389 | 2e-74 | |
| Q7XPE8 | 471 | Probable nucleoredoxin 3 | no | no | 0.687 | 0.696 | 0.385 | 7e-67 | |
| Q503L9 | 418 | Nucleoredoxin OS=Danio re | yes | no | 0.490 | 0.559 | 0.344 | 3e-38 | |
| P97346 | 435 | Nucleoredoxin OS=Mus musc | yes | no | 0.538 | 0.590 | 0.320 | 8e-38 | |
| Q6DKJ4 | 435 | Nucleoredoxin OS=Homo sap | yes | no | 0.534 | 0.586 | 0.318 | 9e-38 | |
| A6QLU8 | 435 | Nucleoredoxin OS=Bos taur | yes | no | 0.534 | 0.586 | 0.318 | 9e-38 |
| >sp|O80763|NRX1_ARATH Probable nucleoredoxin 1 OS=Arabidopsis thaliana GN=At1g60420 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/480 (65%), Positives = 397/480 (82%), Gaps = 3/480 (0%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVE 60
MPWLAVPF+DSETRD+LDELFKV GIP+LV++D++GK++++ GV +IR YG + YPFT E
Sbjct: 99 MPWLAVPFTDSETRDRLDELFKVRGIPNLVMVDDHGKLVNENGVGVIRSYGADAYPFTPE 158
Query: 61 RIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKAS 120
++KE+KE E+RA+R Q+LRSVL + SRDFVIS DG K+ VS+LEGKTIGL FS++SY+
Sbjct: 159 KMKEIKEDEDRARRGQTLRSVLVTPSRDFVISPDGNKVPVSELEGKTIGLLFSVASYRKC 218
Query: 121 AEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180
E TP+LVE Y KLK E FEIVLISL+D+EESF +D + PWLALPF DKS KLAR+
Sbjct: 219 TELTPKLVEFYTKLKENKEDFEIVLISLEDDEESFNQDFKTKPWLALPFNDKSGSKLARH 278
Query: 181 FELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLES 240
F LSTLPTLVI+GPDGKT HSNVAEAI+++GV A+PFTPEKF EL E+++AK E+QTLES
Sbjct: 279 FMLSTLPTLVILGPDGKTRHSNVAEAIDDYGVLAYPFTPEKFQELKELEKAKVEAQTLES 338
Query: 241 VLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNES 300
+LVSGDL++V+GK+G KV VSDL GKTIL+YFSAHWCPPCRAF PKL++ YK+IKERNE+
Sbjct: 339 LLVSGDLNYVLGKDGAKVLVSDLVGKTILMYFSAHWCPPCRAFTPKLVEVYKQIKERNEA 398
Query: 301 LEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTIT 360
E++FISSDRDQ SFDE++ MPWLALPFGD RKASL++ FKV GIPML A+GP+G+T+T
Sbjct: 399 FELIFISSDRDQESFDEYYSQMPWLALPFGDPRKASLAKTFKVGGIPMLAALGPTGQTVT 458
Query: 361 KEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPENVKHALH-EHELVLDRCGVYSC 419
KEARD++ HGA+AYPFTEER+KEI+ +Y+E+AK WP+ VKH LH EHEL L R VY+C
Sbjct: 459 KEARDLVVAHGADAYPFTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTC 518
Query: 420 DGCDEEGRVWAFSCDECDFCLHPNCALGEDKGTKDDKSEE--QNPSKEGWRCDGGLCYKG 477
D C+EEG +W++ CDECDF LH CAL ED D++ + + SK+GW C+G +C K
Sbjct: 519 DKCEEEGTIWSYHCDECDFDLHAKCALNEDTKENGDEAVKVGGDESKDGWVCEGNVCTKA 578
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Probable thiol-disulfide oxidoreductase required for pollen tube growth and pollen function in the pistil. Seems not to be required for in vitro pollen tube growth. May be involved in the generation of lipid signaling molecules in pistil. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 8EC: .EC: 1EC: .EC: 8 |
| >sp|Q7Y0F2|NRX12_ORYSJ Probable nucleoredoxin 1-2 OS=Oryza sativa subsp. japonica GN=Os03g0405900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 586 bits (1511), Expect = e-166, Method: Compositional matrix adjust.
Identities = 284/484 (58%), Positives = 364/484 (75%), Gaps = 9/484 (1%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLSDGGVEIIREYGVEGYPFTV 59
MPWLAVPFSDSE KL+E +KVMGIPHLVILD ++G++ ++ GVE++ EYG E YPFT
Sbjct: 98 MPWLAVPFSDSEALAKLNERYKVMGIPHLVILDAKSGEIYTEDGVELVHEYGTEAYPFTT 157
Query: 60 ERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKA 119
ERI E+KEQE+ AK Q++ S+ + +RD++I++ G K+ +SDLEGK +GL F ++ Y
Sbjct: 158 ERINELKEQEKAAKDNQTIHSLFGTPTRDYLITNKGDKVPISDLEGKYVGLCFVVNGYGP 217
Query: 120 SAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 179
+FT L ++YEKLK GE FE+V++SLD +EESF MPWLA+P DK EKLAR
Sbjct: 218 VVQFTSVLAKIYEKLKAVGEKFEVVMVSLDGDEESFNESFADMPWLAIPQGDKMCEKLAR 277
Query: 180 YFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGA---FPFTPEKFAELAEIQRAKEESQ 236
YFELS LP LV+IGPDGKTL+ ++A+ I+EHG A FPF+ EK LAE +AK ESQ
Sbjct: 278 YFELSGLPMLVLIGPDGKTLNDDIADIIDEHGPDAWEGFPFSAEKLEILAEKAKAKAESQ 337
Query: 237 TLESVLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKE 296
TLES+LV+GDLDFV+GK+G KVPVS+L GKT+LLYFSA WCPPCRAFLPKL++ Y KIKE
Sbjct: 338 TLESLLVTGDLDFVLGKDGAKVPVSELVGKTVLLYFSAKWCPPCRAFLPKLVNEYNKIKE 397
Query: 297 RNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSG 356
++ E+VFISSDR+Q+S+DEFF GMPWLALP GD RK LS+ FK++GIP LVAIGP G
Sbjct: 398 KHNDFEIVFISSDREQSSYDEFFSGMPWLALPLGDERKQQLSKIFKITGIPSLVAIGPDG 457
Query: 357 RTITKEARDMIAVHGAEAYPFT----EERMKEIDGQYNEMAKGWPENVKHALHEHELVLD 412
+T+TK+A+ + HGA+A+PFT +E KE + + N+MAKGWPE +KH LH+HELVL
Sbjct: 458 KTVTKDAKTPLVAHGADAFPFTEEKLQELEKEKEKKINDMAKGWPEKLKHDLHDHELVLT 517
Query: 413 RCGVYSCDGCDEEGRVWAFSCDECDFCLHPNCALGEDKGTKDDKSEEQNPSKEGWRCDGG 472
RC Y CDGCDE G W++ C ECDF LHP CAL E+KG + E + G+ C+G
Sbjct: 518 RCTTYGCDGCDEMGDSWSYRCKECDFDLHPKCAL-EEKGDVEMGEENAEAAPAGYVCEGD 576
Query: 473 LCYK 476
+C K
Sbjct: 577 VCRK 580
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Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q7Y0E8|NRX11_ORYSJ Probable nucleoredoxin 1-1 OS=Oryza sativa subsp. japonica GN=Os03g0405500 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 580 bits (1495), Expect = e-165, Method: Compositional matrix adjust.
Identities = 284/484 (58%), Positives = 359/484 (74%), Gaps = 12/484 (2%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLSDGGVEIIREYGVEGYPFTV 59
MPWLAVPFSDSE R KL++ FKV GIPHLVIL+ +G+V ++ GVE++ +G E YPFT
Sbjct: 91 MPWLAVPFSDSECRAKLNKRFKVRGIPHLVILNATSGEVYTEDGVELVTVHGTEAYPFTT 150
Query: 60 ERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKA 119
ERI E+KEQE+ AK Q+++SVL + +RD+++S+ G ++ +SDLEGK +GL F ++ Y
Sbjct: 151 ERINELKEQEKAAKDNQTVQSVLGTPTRDYLLSNKGDRVPISDLEGKYVGLCFVVNGYGP 210
Query: 120 SAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 179
+FT L + YEKLK GE FE+V +SLD +EE MPWLA+P +DK EKLAR
Sbjct: 211 VVQFTSLLAKFYEKLKEVGEKFEVVAVSLDSDEELSNESFAGMPWLAIPQEDKMGEKLAR 270
Query: 180 YFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGA---FPFTPEKFAELAEIQRAKEESQ 236
YFEL LPTLV+IGPDGKTL++NVA+ I+EHG A FPFT EK LAE +AK E Q
Sbjct: 271 YFELRGLPTLVLIGPDGKTLNNNVADIIDEHGQDAWEGFPFTAEKMEILAEKAKAKAELQ 330
Query: 237 TLESVLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKE 296
TLES+LV GDLDFV+GK+G KVPVS+L GKT+LLYFSA WC PCRAFLPKL+D Y KIKE
Sbjct: 331 TLESLLVIGDLDFVLGKDGAKVPVSELVGKTVLLYFSAKWCGPCRAFLPKLVDEYNKIKE 390
Query: 297 RNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSG 356
++ E++FISSDRDQ+S+DEFF GMPWLALP GD RK LS+ F+V GIP LVAIG G
Sbjct: 391 KHNDFEIIFISSDRDQSSYDEFFSGMPWLALPLGDERKQHLSKTFRVRGIPSLVAIGADG 450
Query: 357 RTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPENVKHALH-EHELVLDRCG 415
RT+ ++A+ + HGA+A+PFTEER+ E++ + +EMAKGWP +KH LH EHELVL RC
Sbjct: 451 RTVARDAKTPLTAHGADAFPFTEERLLEMERKIDEMAKGWPGKLKHELHDEHELVLTRCT 510
Query: 416 VYSCDGCDEEGRVWAFSCDECDFCLHPNCALG--EDKGTKDDKSEEQNPSKEGWRCDGGL 473
Y CDGCDE G W++ C ECDF LHP CALG E+K D+ E +P+ C+GG+
Sbjct: 511 TYGCDGCDEMGSSWSYRCRECDFDLHPKCALGKEEEKKGDDEAEAEADPA-----CEGGV 565
Query: 474 CYKG 477
C K
Sbjct: 566 CRKA 569
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Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q8VZQ0|NRX3_ARATH Probable nucleoredoxin 3 OS=Arabidopsis thaliana GN=At4g31240 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 304 bits (778), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 151/369 (40%), Positives = 219/369 (59%), Gaps = 2/369 (0%)
Query: 78 LRSVLTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGK 137
L S+L + +F++S G ++ + + GKTI L+FS + +FTP L+++YE L+ +
Sbjct: 17 LYSILAAEGIEFLLSHSG-EVPLEYIHGKTICLFFSAIWCRPCKDFTPELIKLYENLQNR 75
Query: 138 GESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGK 197
GE EI+ +S D + SF MPWLA+PF KL + +S +P+LV + D
Sbjct: 76 GEELEIIFVSFDHDMTSFYEHFWCMPWLAVPFNLSLLNKLRDKYGISRIPSLVPLYSDEI 135
Query: 198 TLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGK 257
++ +V IE++G AFPFT ++ EL I +K LE +L ++VV +NG K
Sbjct: 136 SVAEDVIGLIEDYGSEAFPFTKKRKEELKAIDDSKRLGGQLEKLLTHESRNYVVARNGSK 195
Query: 258 VPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNE-SLEVVFISSDRDQTSFD 316
V VS L GKTI LYF AHWCPP R+F +L+D Y ++ ++ S EV+ IS+DRD F+
Sbjct: 196 VLVSKLVGKTIGLYFGAHWCPPFRSFTSQLVDVYNELATTDKGSFEVILISTDRDSREFN 255
Query: 317 EFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYP 376
MPWLA+P+ D + L R F V IP LV IGP +T+T AR+M++++G+ ++P
Sbjct: 256 INMTNMPWLAIPYEDRTRQDLCRIFNVKLIPALVIIGPEEKTVTTNAREMVSLYGSRSFP 315
Query: 377 FTEERMKEIDGQYNEMAKGWPENVKHALHEHELVLDRCGVYSCDGCDEEGRVWAFSCDEC 436
FTE R+ E+ + P VK HEHEL LD Y CD C ++GR WAFSC+ C
Sbjct: 316 FTESRIVELKACLKKEGDSLPRKVKDNKHEHELKLDMAKAYVCDFCKKQGRFWAFSCNAC 375
Query: 437 DFCLHPNCA 445
D+ LHP C
Sbjct: 376 DYDLHPTCV 384
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Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q0JIL1|NRX2_ORYSJ Probable nucleoredoxin 2 OS=Oryza sativa subsp. japonica GN=Os01g0794400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 280 bits (716), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 141/362 (38%), Positives = 216/362 (59%), Gaps = 7/362 (1%)
Query: 90 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 149
+IS G ++ +S+LEGK IGLYF+ + Y FTP L Y +LK G FE++ +S D
Sbjct: 26 LISPTGNEVQISELEGKIIGLYFAANWYPKCEAFTPALTAAYHQLKEHGAGFEVIFVSCD 85
Query: 150 DEEESFKRDLGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIE 208
+ SF+R +MPW A+PF D +++L+ F++ +P LV++ P+G+ + + E +
Sbjct: 86 ENRPSFERFHRAMPWPAVPFGDIGCKKRLSERFQVEGIPRLVVLAPNGEVVQPDAVELVH 145
Query: 209 EHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKVPVSDLAGKTI 268
+G AFPFT + AEL ++ K SQTLE + D+V G +VP+S L GKT+
Sbjct: 146 RYGDRAFPFTSARVAELEADEQRKFASQTLEKIFSVSGKDYVNGSQ-EQVPISSLVGKTV 204
Query: 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALP 328
LYFSAH C PC F KL Y +K + E E+++I D+++ + MPWLALP
Sbjct: 205 GLYFSAHRCAPCIKFTAKLAAIYSNLKGKAEDFEIIYIPMDKEEDGYLRSCSDMPWLALP 264
Query: 329 FGD-ARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDG 387
+ D A +L+R F V IP LV +GP G+T+T+E R+++ ++ A+PFT+E+++ +
Sbjct: 265 YDDGASSGALARYFDVREIPTLVVVGPDGKTVTREGRNLVNLYFDMAFPFTDEQIRLLQE 324
Query: 388 QYNEMAKGWPENVKHALHEHEL--VLDRC--GVYSCDGCDEEGRVWAFSCDECDFCLHPN 443
+E AKG+P +++H H HEL V D+ G Y C CDE+G WA+ C C + +H
Sbjct: 325 MEDEDAKGYPPSLRHTGHRHELSIVSDKSGGGPYICCECDEQGLGWAYQCIACGYEIHLR 384
Query: 444 CA 445
C
Sbjct: 385 CG 386
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Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q7XPE8|NRX3_ORYSJ Probable nucleoredoxin 3 OS=Oryza sativa subsp. japonica GN=Os04g0608600 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 254 bits (650), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 128/332 (38%), Positives = 195/332 (58%), Gaps = 4/332 (1%)
Query: 90 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 149
++S+ G++I +S +EGK I L+FS + FTP+L+++Y KL+ ++ EI+ ISLD
Sbjct: 26 LLSNGGKEIPLSSIEGKRICLFFSAHWCRPCRNFTPKLLQIYRKLRNTCKNMEIIFISLD 85
Query: 150 DEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGP---DGKTLHSNVAEA 206
+E SF MPWLALPF R+KL F++ +P L+ + G + + +
Sbjct: 86 RDEISFLDYFKGMPWLALPFDTGLRQKLCVQFDIEHIPALIPLSTTLSHGFRVEEDAVKL 145
Query: 207 IEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKVPVSDLAGK 266
+EE+GV A+PF ++ +EL + A+ + L +L + ++V+ +G K P+SDL GK
Sbjct: 146 VEEYGVDAYPFGAKRRSELEGMDDARRQGGNLLQLLGCKEREYVISADGIKTPISDLNGK 205
Query: 267 TILLYFSAHWCPPCRAFLPKLIDAYKKIKE-RNESLEVVFISSDRDQTSFDEFFKGMPWL 325
TI LYF AHWCPPCRAF +L +AY ++K R + +V+FIS DR++ F MPW
Sbjct: 206 TIGLYFGAHWCPPCRAFTKQLREAYDELKALRPGNFQVIFISMDRNEEEFQASLSAMPWF 265
Query: 326 ALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEI 385
A+P+ D LSR F + GIP L+ +GP G+ + R +I+ +GA A+PFTE R E+
Sbjct: 266 AIPYSDTTVQELSRIFTIKGIPTLLILGPDGKVFKTDGRRIISKYGAMAFPFTESRAYEL 325
Query: 386 DGQYNEMAKGWPENVKHALHEHELVLDRCGVY 417
+ + P V+ HEHEL LD Y
Sbjct: 326 EEVLKKERDSLPHRVRDHRHEHELELDMAKAY 357
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Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q503L9|NXN_DANRE Nucleoredoxin OS=Danio rerio GN=nxn PE=2 SV=1 | Back alignment and function description |
|---|
Score = 159 bits (403), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/261 (34%), Positives = 141/261 (54%), Gaps = 27/261 (10%)
Query: 111 YFSMSSYKASAEFTPRLVEVYEKLKGKGE---SFEIVLISLDDEEESFKRDLGSMPWLAL 167
YF S +F L E Y K K E EIV IS D +++ ++ L M W AL
Sbjct: 36 YFGCSLNGPCKQFNASLTEFYSKFKKSSEHKDKLEIVFISSDQDQKQWQDFLQEMQWPAL 95
Query: 168 PFKDKSRE-KLARYFELSTLPTLVII-GPDGKTLHSNVAEAIEEHGVGA-FPFTPEKFAE 224
PFKD+ ++ KL ++++++P+LV I GK + N + + G FP+ P+ FAE
Sbjct: 96 PFKDRHKKMKLWNKYKVTSIPSLVFIDAATGKVVCRNGLLVVRDDPKGLEFPWGPKPFAE 155
Query: 225 LAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFL 284
+ + QT +S + L G + +YFSAHWCPPCR+
Sbjct: 156 VVSGPLLRNNRQTTDS--------------------TALEGSYVGVYFSAHWCPPCRSLT 195
Query: 285 PKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGD-ARKASLSRKFKV 343
L+++Y+K+KE + E+VF+S+DR + SF ++F MPWLA+P+ D AR++ L+R + +
Sbjct: 196 RVLVESYRKVKETGQKFEIVFVSADRSEESFTQYFSEMPWLAVPYSDEARRSRLNRLYGI 255
Query: 344 SGIPMLVAIGPSGRTITKEAR 364
GIP L+ + G IT++ R
Sbjct: 256 QGIPTLILLDTEGHMITRQGR 276
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Functions as a redox-dependent negative regulator of the Wnt signaling pathway. Danio rerio (taxid: 7955) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|P97346|NXN_MOUSE Nucleoredoxin OS=Mus musculus GN=Nxn PE=1 SV=1 | Back alignment and function description |
|---|
Score = 158 bits (400), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 97/303 (32%), Positives = 157/303 (51%), Gaps = 46/303 (15%)
Query: 88 DFVISSDGRKISVSDLEGKTI---GLYFSMSSYKASAEFTPRLVEVYEKLKGKG------ 138
D +++ G ++ V L + I GLYF S A+ + L Y +L+G
Sbjct: 11 DKLVTGGGEEVDVHSLGARGIALLGLYFGCSLSAPCAQLSASLAAFYGRLRGDAAAGPGA 70
Query: 139 -------------ESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSRE-KLARYFELS 184
EIV +S D ++ ++ + MPWLALP+K+K R+ KL + +S
Sbjct: 71 GAGAGAAAEPEPRHRLEIVFVSSDQDQRQWQDFVRDMPWLALPYKEKHRKLKLWNKYRVS 130
Query: 185 TLPTLVII-GPDGKTLHSNVAEAIEEHGVGA-FPFTPEKFAELAEIQRAKEESQTLESVL 242
+P+L+ + GK + N I + G FP+ P+ F E+
Sbjct: 131 NIPSLIFLDATTGKVVCRNGLLVIRDDPEGLEFPWGPKPFREV----------------- 173
Query: 243 VSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLE 302
++G L + NG + S L G + +YFSAHWCPPCR+ L+++Y+KIKE + E
Sbjct: 174 IAGPL---LRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQEFE 230
Query: 303 VVFISSDRDQTSFDEFFKGMPWLALPFGD-ARKASLSRKFKVSGIPMLVAIGPSGRTITK 361
++F+S+DR + SF ++F MPWLA+P+ D AR++ L+R + + GIP L+ + P G IT+
Sbjct: 231 IIFVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITR 290
Query: 362 EAR 364
+ R
Sbjct: 291 QGR 293
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Functions as a redox-dependent negative regulator of the Wnt signaling pathway, possibly by preventing ubiquitination of DVL3 by the BCR(KLHL12) complex. May also function as a transcriptional regulator act as a regulator of protein phosphatase 2A (PP2A). Mus musculus (taxid: 10090) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q6DKJ4|NXN_HUMAN Nucleoredoxin OS=Homo sapiens GN=NXN PE=1 SV=2 | Back alignment and function description |
|---|
Score = 158 bits (399), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 157/301 (52%), Gaps = 46/301 (15%)
Query: 90 VISSDGRKISVSDLEGKTI---GLYFSMSSYKASAEFTPRLVEVYEKLKGKG-------- 138
+++ G ++ V L + I GLYF S A+ + L Y +L+G
Sbjct: 13 LVTGGGEEVDVHSLGARGISLLGLYFGCSLSAPCAQLSASLAAFYGRLRGDAAAGPGPGA 72
Query: 139 -----------ESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSRE-KLARYFELSTL 186
EIV +S D ++ ++ + MPWLALP+K+K R+ KL + +S +
Sbjct: 73 GAGAAAEPEPRRRLEIVFVSSDQDQRQWQDFVRDMPWLALPYKEKHRKLKLWNKYRISNI 132
Query: 187 PTLVII-GPDGKTLHSNVAEAIEEHGVGA-FPFTPEKFAELAEIQRAKEESQTLESVLVS 244
P+L+ + GK + N I + G FP+ P+ F E+ ++
Sbjct: 133 PSLIFLDATTGKVVCRNGLLVIRDDPEGLEFPWGPKPFREV-----------------IA 175
Query: 245 GDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVV 304
G L + NG + S L G + +YFSAHWCPPCR+ L+++Y+KIKE ++ E++
Sbjct: 176 GPL---LRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQNFEII 232
Query: 305 FISSDRDQTSFDEFFKGMPWLALPFGD-ARKASLSRKFKVSGIPMLVAIGPSGRTITKEA 363
F+S+DR + SF ++F MPWLA+P+ D AR++ L+R + + GIP L+ + P G IT++
Sbjct: 233 FVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIMLDPQGEVITRQG 292
Query: 364 R 364
R
Sbjct: 293 R 293
|
Functions as a redox-dependent negative regulator of the Wnt signaling pathway, possibly by preventing ubiquitination of DVL3 by the BCR(KLHL12) complex. May also function as a transcriptional regulator act as a regulator of protein phosphatase 2A (PP2A). Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|A6QLU8|NXN_BOVIN Nucleoredoxin OS=Bos taurus GN=NXN PE=2 SV=1 | Back alignment and function description |
|---|
Score = 158 bits (399), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 156/301 (51%), Gaps = 46/301 (15%)
Query: 90 VISSDGRKISVSDLEGKTI---GLYFSMSSYKASAEFTPRLVEVYEKLKGKG-------- 138
+++ G ++ V L + I GLYF S A+ + L Y +L+G
Sbjct: 13 LVTGGGEEVDVHSLAARGISLLGLYFGCSLSAPCAQLSASLAAFYGRLRGDAAAGPGPGP 72
Query: 139 -----------ESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSRE-KLARYFELSTL 186
EIV +S D ++ ++ + MPWLALP+K+K R+ KL + +S +
Sbjct: 73 GAGASAEPEPRRRLEIVFVSSDQDQRQWQDFVRDMPWLALPYKEKHRKLKLWNKYRISNI 132
Query: 187 PTLVII-GPDGKTLHSNVAEAIEEHGVGA-FPFTPEKFAELAEIQRAKEESQTLESVLVS 244
P+L+ + GK + N I + G FP+ P+ F E+ ++
Sbjct: 133 PSLIFLDATSGKVVCRNGLLVIRDDPEGLEFPWGPKPFREV-----------------IA 175
Query: 245 GDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVV 304
G L + NG + S L G + +YFSAHWCPPCR+ L+++Y+KIKE + E++
Sbjct: 176 GPL---LRSNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEII 232
Query: 305 FISSDRDQTSFDEFFKGMPWLALPFGD-ARKASLSRKFKVSGIPMLVAIGPSGRTITKEA 363
F+S+DR + SF ++F MPWLA+P+ D AR++ L+R + + GIP L+ + P G IT++
Sbjct: 233 FVSADRSEDSFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQG 292
Query: 364 R 364
R
Sbjct: 293 R 293
|
Functions as a redox-dependent negative regulator of the Wnt signaling pathway, possibly by preventing ubiquitination of DVL3 by the BCR(KLHL12) complex. May also function as a transcriptional regulator act as a regulator of protein phosphatase 2A (PP2A). Bos taurus (taxid: 9913) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 477 | ||||||
| 147799889 | 572 | hypothetical protein VITISV_008818 [Viti | 0.997 | 0.832 | 0.740 | 0.0 | |
| 255568796 | 575 | nucleoredoxin, putative [Ricinus communi | 1.0 | 0.829 | 0.708 | 0.0 | |
| 147792238 | 570 | hypothetical protein VITISV_043885 [Viti | 0.995 | 0.833 | 0.709 | 0.0 | |
| 359473224 | 570 | PREDICTED: probable nucleoredoxin 1-like | 0.995 | 0.833 | 0.711 | 0.0 | |
| 356526803 | 570 | PREDICTED: probable nucleoredoxin 1-like | 0.995 | 0.833 | 0.707 | 0.0 | |
| 359473192 | 573 | PREDICTED: probable nucleoredoxin 1-like | 1.0 | 0.832 | 0.698 | 0.0 | |
| 359473226 | 806 | PREDICTED: probable nucleoredoxin 1 [Vit | 0.993 | 0.588 | 0.700 | 0.0 | |
| 217074414 | 570 | unknown [Medicago truncatula] gi|3885162 | 0.995 | 0.833 | 0.686 | 0.0 | |
| 147778402 | 570 | hypothetical protein VITISV_044051 [Viti | 0.993 | 0.831 | 0.698 | 0.0 | |
| 18406743 | 578 | putative nucleoredoxin 1 [Arabidopsis th | 1.0 | 0.825 | 0.658 | 0.0 |
| >gi|147799889|emb|CAN77321.1| hypothetical protein VITISV_008818 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/478 (74%), Positives = 425/478 (88%), Gaps = 2/478 (0%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVE 60
MPWLA+PFSDS+ RD+L+ELFKVMGIP+LV+LDE+GKVLS+ GV+II+EYGVE YPFT E
Sbjct: 96 MPWLAIPFSDSDARDQLNELFKVMGIPNLVMLDESGKVLSEDGVDIIQEYGVEAYPFTPE 155
Query: 61 RIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKAS 120
+IKEMKE+EE A++EQSLRS+L S SRD+VIS+DG+K+ VS+LEGK +GL+FS+SSYKA
Sbjct: 156 KIKEMKEKEETARKEQSLRSILVSQSRDYVISTDGKKVPVSELEGKFVGLFFSLSSYKAC 215
Query: 121 AEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180
EFTP LV+VYEKL+ KGESFEIV+ISLDDEEESFK+ GSMPWLALPF+DKS EKLARY
Sbjct: 216 LEFTPTLVDVYEKLRAKGESFEIVMISLDDEEESFKKYFGSMPWLALPFRDKSCEKLARY 275
Query: 181 FELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLES 240
FELS LPTLV+IGPDGKTLHSNVAEAI+EHG+ A+PFTPEKFAEL EI++AK E+QTLES
Sbjct: 276 FELSALPTLVVIGPDGKTLHSNVAEAIQEHGIQAYPFTPEKFAELEEIEKAKREAQTLES 335
Query: 241 VLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNES 300
+LVSGD DFV+GK+G K+PVSDL GK ILLYFSAHWCPPCRAFLPKLI+AY+KIK ++E+
Sbjct: 336 ILVSGDRDFVIGKDGVKIPVSDLVGKNILLYFSAHWCPPCRAFLPKLIEAYQKIKTKDEA 395
Query: 301 LEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTIT 360
EV+FISSD+DQTSFDEFF GMPWLALPFGD RKASLSR FKV GIP L+AIGP+GRT+T
Sbjct: 396 FEVIFISSDKDQTSFDEFFSGMPWLALPFGDKRKASLSRTFKVHGIPSLIAIGPTGRTVT 455
Query: 361 KEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPENVKHALH-EHELVLDRCGVYSC 419
EAR+++ +HGA+AYPFTEE +KEI+ QY EMAKGWPE +KHALH EHELVL + VY C
Sbjct: 456 TEARNLVMIHGADAYPFTEEHIKEIEAQYEEMAKGWPEKMKHALHEEHELVLTKRRVYGC 515
Query: 420 DGCDEEGRVWAFSCDECDFCLHPNCALGEDKGTKDDKSEEQNPSKEGWRCDGGLCYKG 477
+GC+++G +W+F C+ECDF LHP CAL EDKG+KDD+ E+ +P EGW+CDG +CYK
Sbjct: 516 NGCEKQGHLWSFYCEECDFDLHPKCALEEDKGSKDDEMEKASPG-EGWKCDGEVCYKA 572
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255568796|ref|XP_002525369.1| nucleoredoxin, putative [Ricinus communis] gi|223535332|gb|EEF37007.1| nucleoredoxin, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/481 (70%), Positives = 407/481 (84%), Gaps = 4/481 (0%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVE 60
MPWLA+PFSDS+ RD+LDE+FKV GIPH VILDENGKV S+ GVEII+EYGV+ YPFT E
Sbjct: 95 MPWLAIPFSDSDKRDRLDEIFKVQGIPHFVILDENGKVSSESGVEIIQEYGVQCYPFTAE 154
Query: 61 RIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKAS 120
RIK +K QEE A+R QSLRS+L SRD+VI+SDG+K+SVS+LEGKT+GLYFS+SSY +
Sbjct: 155 RIKVLKGQEEEARRNQSLRSILVFGSRDYVIASDGKKVSVSELEGKTVGLYFSLSSYTSC 214
Query: 121 AEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180
+FT L EVYEKLK KGE+FEIV ISLDDEEE+F++ L +MPWLA PF DK EKL RY
Sbjct: 215 VDFTSTLAEVYEKLKAKGENFEIVFISLDDEEETFQQSLANMPWLAFPFNDKGCEKLVRY 274
Query: 181 FELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLES 240
FELST+PTLV+IGPDGKTLHSNVAEAIEEHGV A+PFTPEKFAELAE+++A+E +QTLES
Sbjct: 275 FELSTVPTLVVIGPDGKTLHSNVAEAIEEHGVQAYPFTPEKFAELAEMEKAREAAQTLES 334
Query: 241 VLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNES 300
VLVSGD +FV+G++G K+PV+DL GK ILLYFSAHWCPPCRAFLPKL++AY +IK ++++
Sbjct: 335 VLVSGDQNFVIGRDGAKIPVTDLVGKNILLYFSAHWCPPCRAFLPKLVEAYHEIKTKDDA 394
Query: 301 LEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTIT 360
EV+FISSDRDQ SFDEFF GMPWLALPFGD RKASLSRKFKV GIPML+A+GP+GRTIT
Sbjct: 395 FEVIFISSDRDQASFDEFFSGMPWLALPFGDVRKASLSRKFKVQGIPMLIALGPTGRTIT 454
Query: 361 KEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPENVKHALH-EHELVLDRCGVYSC 419
KEAR ++ +HGA+AY FTEE +KEI+ +Y +MAKGWPE V HALH EHELVL R + C
Sbjct: 455 KEARSLVTLHGADAYLFTEEHLKEIEAKYEDMAKGWPEKVNHALHEEHELVLSRRMNFIC 514
Query: 420 DGCDEEGRVWAFSCDECDFCLHPNCALGEDKGTKDDKSEEQN---PSKEGWRCDGGLCYK 476
DGC+E G +W+F C+ECDF LHP CAL E K T+D E++N SKEGW CDG +CYK
Sbjct: 515 DGCNEGGNIWSFHCEECDFDLHPKCALKEGKETRDGGKEDENGEAVSKEGWICDGEVCYK 574
Query: 477 G 477
Sbjct: 575 A 575
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147792238|emb|CAN59927.1| hypothetical protein VITISV_043885 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/478 (70%), Positives = 403/478 (84%), Gaps = 3/478 (0%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVE 60
MPWLA+PFSDS+TRD LDELF+V GIPH+VI+ ENGKVL+D GVEIIREYGVEG+PFT E
Sbjct: 95 MPWLAIPFSDSDTRDHLDELFRVSGIPHIVIIGENGKVLTDSGVEIIREYGVEGFPFTSE 154
Query: 61 RIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKAS 120
RIKE+KEQEE AKREQSLRS+L S SRDFVIS++G K+ +S LEG+ +GLYFS+SSYK
Sbjct: 155 RIKELKEQEEVAKREQSLRSILVSDSRDFVISANGMKVPISKLEGRLVGLYFSLSSYKLC 214
Query: 121 AEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180
+FT +LV+VY K+K GESFEIVLIS DD+EESF GSMPW ALPFKD+S KLARY
Sbjct: 215 VDFTSKLVDVYAKVKAMGESFEIVLISFDDDEESFNEGXGSMPWFALPFKDESCRKLARY 274
Query: 181 FELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLES 240
FELST+PTLV+IGPDGKTLHSNV EAIEE+G+ A+PFTP KFAEL EI++AK+E+QTLES
Sbjct: 275 FELSTVPTLVMIGPDGKTLHSNVVEAIEEYGIQAYPFTPAKFAELEEIEKAKQEAQTLES 334
Query: 241 VLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNES 300
+LVSG+ D+++GK+G KVPVSDL GK ILLYFSA WC PCRAFLPKL DAY KIK ++
Sbjct: 335 ILVSGNRDYLIGKHGVKVPVSDLVGKNILLYFSAXWCSPCRAFLPKLTDAYHKIKAKDSG 394
Query: 301 LEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTIT 360
EV+FISSDRDQTSFD+FF MPWLALPFGD RK SLS+ FKV GIP +VAIGP+GRTIT
Sbjct: 395 FEVIFISSDRDQTSFDDFFSEMPWLALPFGDERKESLSKMFKVQGIPKVVAIGPTGRTIT 454
Query: 361 KEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPENVKHALH-EHELVLDRCGVYSC 419
+ARD++A HGA+AYPFT+ER++EI+ QY EMAKGWP+ + HALH EHEL L + +Y C
Sbjct: 455 TQARDLVADHGADAYPFTDERLQEIEAQY-EMAKGWPDKLSHALHEEHELALTQHQIYKC 513
Query: 420 DGCDEEGRVWAFSCDECDFCLHPNCALGEDKGTKDDKSEEQNPSKEGWRCDGGLCYKG 477
DGCDEEG WAFSC+ECDF LHP CAL + KGT+DD +E+ P +EGW CDG +C+K
Sbjct: 514 DGCDEEGHAWAFSCEECDFDLHPKCALEDGKGTEDDAMDEEKP-EEGWICDGKVCFKA 570
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473224|ref|XP_003631272.1| PREDICTED: probable nucleoredoxin 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/478 (71%), Positives = 403/478 (84%), Gaps = 3/478 (0%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVE 60
MPWLA+PFSDS+TRD LDELF+V GIPHLVI+ ENGKVL+D GVEIIREYGVEG+PFT E
Sbjct: 95 MPWLAIPFSDSDTRDHLDELFRVSGIPHLVIIGENGKVLTDSGVEIIREYGVEGFPFTSE 154
Query: 61 RIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKAS 120
RIKE+KEQEE AKREQSLRS+L S SRDFVIS++G K+ +S LEG+ +GLYFS+SSYK
Sbjct: 155 RIKELKEQEEVAKREQSLRSILVSDSRDFVISANGMKVPISKLEGRLVGLYFSLSSYKLC 214
Query: 121 AEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180
+FT +LV+VY K+K GESFEIVLIS DD+EESF GSMP ALPFKD+S KLARY
Sbjct: 215 VDFTSKLVDVYAKVKAMGESFEIVLISFDDDEESFNEGFGSMPCFALPFKDESCRKLARY 274
Query: 181 FELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLES 240
FELST+PTLV+IGPDGKTLHSNV EAIEE+G+ A+PFTP KFAEL EI++AK+E+QTLES
Sbjct: 275 FELSTVPTLVMIGPDGKTLHSNVVEAIEEYGIQAYPFTPAKFAELEEIEKAKQEAQTLES 334
Query: 241 VLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNES 300
+LVSG+ D+++GK+G KVPVSDL GK ILLYFSAHWC PCRAFLPKL DAY KIK ++
Sbjct: 335 ILVSGNRDYLIGKHGVKVPVSDLVGKNILLYFSAHWCSPCRAFLPKLTDAYHKIKAKDSG 394
Query: 301 LEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTIT 360
EV+FISSDRDQTSFD+FF MPWLALPFGD RK SLS+ FKV GIP +VAIGP+GRTIT
Sbjct: 395 FEVIFISSDRDQTSFDDFFSEMPWLALPFGDERKESLSKMFKVQGIPKVVAIGPTGRTIT 454
Query: 361 KEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPENVKHALH-EHELVLDRCGVYSC 419
+ARD++A HGA+AYPFT+ER++EI+ QY EMAKGWP+ + HALH EHEL L + +Y C
Sbjct: 455 TQARDLVADHGADAYPFTDERLQEIEAQY-EMAKGWPDKLSHALHEEHELALTQHQIYKC 513
Query: 420 DGCDEEGRVWAFSCDECDFCLHPNCALGEDKGTKDDKSEEQNPSKEGWRCDGGLCYKG 477
DGCDEEG WAFSC+ECDF LHP CAL + KGT+DD +E+ P +EGW CDG +C+K
Sbjct: 514 DGCDEEGHAWAFSCEECDFDLHPKCALEDGKGTEDDAMDEEKP-EEGWICDGKVCFKA 570
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526803|ref|XP_003532006.1| PREDICTED: probable nucleoredoxin 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/479 (70%), Positives = 406/479 (84%), Gaps = 4/479 (0%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVE 60
MPWLA+PFSDS+TR +LDELF V GIPHL +LDE G V+++ GV++IREYGVEGYPFT
Sbjct: 94 MPWLAIPFSDSDTRSRLDELFHVRGIPHLALLDEAGNVVTEDGVDVIREYGVEGYPFTSA 153
Query: 61 RIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKAS 120
RI+E+++QEE A+R QS+RS+L S SRDFVISSDG+K VS+LEGKT+GLYF + S+ +
Sbjct: 154 RIQELRDQEEEARRNQSVRSLLVSPSRDFVISSDGKKTLVSELEGKTVGLYFCVKSFGSC 213
Query: 121 AEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180
++FTP+LVEVYEKLK +GE+FE+VLI LDD+EESFK L S+PWL+LPFKDK KLARY
Sbjct: 214 SDFTPKLVEVYEKLKAQGENFEVVLIPLDDDEESFKELLESVPWLSLPFKDKICGKLARY 273
Query: 181 FELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLES 240
FELSTLPTLVIIGPDGKTLHSNVAEAIE+HGV A+PFTPEKFAEL EI +AKE +QTLES
Sbjct: 274 FELSTLPTLVIIGPDGKTLHSNVAEAIEDHGVAAYPFTPEKFAELDEILKAKEAAQTLES 333
Query: 241 VLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNES 300
+LVS D DFV+GK+G K+PVS+L GK +LLYFSAHWCPPCRAFLPKLIDAY KIKE+ +
Sbjct: 334 ILVSDDQDFVIGKDGVKIPVSELKGKVVLLYFSAHWCPPCRAFLPKLIDAYNKIKEKGNA 393
Query: 301 LEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTIT 360
LEVVFISSDRDQTSFDEFF GMPWLALPFGD+RK LSRKF+VSGIPMLVAI SG+T+T
Sbjct: 394 LEVVFISSDRDQTSFDEFFAGMPWLALPFGDSRKKFLSRKFRVSGIPMLVAIASSGQTLT 453
Query: 361 KEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPENVKHALHEHELVLDRCGVYSCD 420
+ARD+++++GA+AYPFTEER+KEI+ + E AKGWPE +KH LHEHELVL R VY CD
Sbjct: 454 TKARDLVSLYGADAYPFTEERIKEIETEQEETAKGWPEKLKHELHEHELVLTRRRVYYCD 513
Query: 421 GCDEEGRVWAFSCDECDFCLHPNCAL-GEDK-GTKDDKSEEQNPSKEGWRCDGGLCYKG 477
C+EEG +W++ C +CDF LHP CAL EDK G+KDD EE+ SK+ W CDG +C K
Sbjct: 514 ACNEEGHIWSYYCGDCDFDLHPKCALEKEDKEGSKDDAKEEK--SKDEWVCDGEVCKKA 570
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473192|ref|XP_003631262.1| PREDICTED: probable nucleoredoxin 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/478 (69%), Positives = 400/478 (83%), Gaps = 1/478 (0%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVE 60
MPWLA+PFSDS+TRD L +LFK+ GIP L +LDE+GKVLS GVEII++YGVEGYPFT E
Sbjct: 96 MPWLAIPFSDSDTRDHLKKLFKMRGIPSLAMLDESGKVLSSEGVEIIKDYGVEGYPFTAE 155
Query: 61 RIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKAS 120
+IKE+KE+EE AK+EQSLRS+L S SRD+VIS+DGRK+SVS+LEGK +GLYFS+SSY A
Sbjct: 156 KIKELKEKEETAKKEQSLRSILVSQSRDYVISADGRKVSVSELEGKLVGLYFSLSSYNAC 215
Query: 121 AEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180
EFT L EVYE+L+ KGESFEIV+ISLDDEE+SFK+ SMPW ALPF DKS KLARY
Sbjct: 216 QEFTTTLAEVYEELRAKGESFEIVMISLDDEEQSFKKYFESMPWFALPFNDKSCGKLARY 275
Query: 181 FELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLES 240
F+L LPTLV+IG DGKTLHSNVAEAIE+HG+ A+PFTPEKF EL EI++AK E+QTLES
Sbjct: 276 FKLRVLPTLVVIGQDGKTLHSNVAEAIEQHGIQAYPFTPEKFVELEEIEKAKREAQTLES 335
Query: 241 VLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNES 300
+LVSGD DFV+GK+G K+PVS LAGK ILLYFSAHWCPPCRAFLPKLI+AY+ IK ++E+
Sbjct: 336 ILVSGDTDFVIGKDGVKIPVSHLAGKNILLYFSAHWCPPCRAFLPKLIEAYQNIKAKDEA 395
Query: 301 LEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTIT 360
EV+FISSDRDQ SFDEFF GMPWLALPFGD RKASL R FKV IP L+A+ P+GRT+T
Sbjct: 396 FEVIFISSDRDQASFDEFFSGMPWLALPFGDKRKASLGRTFKVRSIPKLIAVEPTGRTVT 455
Query: 361 KEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPENVKHALHE-HELVLDRCGVYSC 419
EAR+++ +HGA+AYPFT+E +KEI+ +Y EMAKGWP VKHALHE HELVL + +Y C
Sbjct: 456 TEARNLVMIHGADAYPFTDEHIKEIEARYEEMAKGWPAKVKHALHEQHELVLTKHRMYRC 515
Query: 420 DGCDEEGRVWAFSCDECDFCLHPNCALGEDKGTKDDKSEEQNPSKEGWRCDGGLCYKG 477
+GC++EG +W+F C ECDF LHP CAL EDKG KDD E+ EGW+CDG +C +
Sbjct: 516 NGCEKEGHLWSFYCAECDFDLHPKCALDEDKGIKDDNKLEKAKPGEGWKCDGEVCSRA 573
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473226|ref|XP_002263480.2| PREDICTED: probable nucleoredoxin 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/478 (70%), Positives = 407/478 (85%), Gaps = 4/478 (0%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVE 60
MPWLA+PFSDS+TRD L +LFKV GIP L +LDE+GKVLS GVEII++YGVEGYPFT E
Sbjct: 332 MPWLAIPFSDSDTRDHLKKLFKVRGIPSLAMLDESGKVLSSEGVEIIKDYGVEGYPFTAE 391
Query: 61 RIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKAS 120
+IKE+KE+EE AK+EQSL S+L S SRD+VIS+DG+++ VS+LEGK +GLYFS+SS K
Sbjct: 392 KIKELKEKEETAKKEQSLISILVSQSRDYVISTDGKRVPVSELEGKFVGLYFSLSSSKPR 451
Query: 121 AEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180
+FT LV+VY+KL+ KGESFEIV+ISLDDE ESFK + GSMPWLALPFKD+S +KLARY
Sbjct: 452 LQFTRTLVDVYKKLRAKGESFEIVMISLDDEIESFKTNFGSMPWLALPFKDRSCKKLARY 511
Query: 181 FELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLES 240
FELS LPTLV+IGPDGKTLHSNVAEAI+EHG+ A+PFTPEKFAEL EI++AK E+QTLES
Sbjct: 512 FELSALPTLVVIGPDGKTLHSNVAEAIQEHGIQAYPFTPEKFAELEEIEKAKREAQTLES 571
Query: 241 VLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNES 300
+LVSG+ DFV+GK+ K+PVSDL GK ILLYFSAHWCPPCRAFLPKLI+AY+ IK ++E+
Sbjct: 572 ILVSGNRDFVIGKDRVKIPVSDLVGKNILLYFSAHWCPPCRAFLPKLIEAYQNIKAKDEA 631
Query: 301 LEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTIT 360
EV+FISSDRDQ SFDEFF GMPWLALPFGD RKASL R FKV IP L+A+ P+GRT+T
Sbjct: 632 FEVIFISSDRDQASFDEFFSGMPWLALPFGDKRKASLGRTFKVRSIPKLIAVEPTGRTVT 691
Query: 361 KEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPENVKHALH-EHELVLDRCGVYSC 419
EAR ++ +HGA+AYPFTEE +KEI+ QY EMAKGWPE +KHALH EHELVL + G+Y C
Sbjct: 692 TEARTLVMIHGADAYPFTEEHIKEIEAQY-EMAKGWPEKMKHALHEEHELVLTKRGIYRC 750
Query: 420 DGCDEEGRVWAFSCDECDFCLHPNCALGEDKGTKDDKSEEQNPSKEGWRCDGGLCYKG 477
+GC+++G +W+F C+ECDF LHP CAL EDKG+K+D EE+ EGW+CDG +C +
Sbjct: 751 NGCEKQGHLWSFYCEECDFNLHPKCALEEDKGSKED--EEKARPGEGWKCDGEVCSRA 806
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|217074414|gb|ACJ85567.1| unknown [Medicago truncatula] gi|388516263|gb|AFK46193.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/478 (68%), Positives = 394/478 (82%), Gaps = 3/478 (0%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVE 60
MPWLA+PFSDSETR +LDELF V GIPHL +LDE GKV+++ GV+IIR YG E YPFT +
Sbjct: 95 MPWLAIPFSDSETRGRLDELFHVNGIPHLALLDEAGKVITEDGVDIIRVYGAEAYPFTSK 154
Query: 61 RIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKAS 120
R++E+K+ EE AKR QSLRS+L S SRDF+ISSDG +I + +LEGKT+GL+F +SY+A
Sbjct: 155 RVQELKDIEEEAKRNQSLRSILASRSRDFLISSDGNEIPIPELEGKTVGLHFCATSYRAC 214
Query: 121 AEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180
FT +L EVY+KLK GE+FE+V I LDDEE++FK++L S PWL+LP KDK+ KL +Y
Sbjct: 215 TLFTQKLKEVYKKLKENGENFEVVFIPLDDEEDAFKKELESAPWLSLPLKDKTCAKLIQY 274
Query: 181 FELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLES 240
FELS LPTLVIIGPDGKTLH N AEAIE+HGV A+PFTPEKF+EL EI +AKE SQTLES
Sbjct: 275 FELSELPTLVIIGPDGKTLHPNAAEAIEDHGVDAYPFTPEKFSELDEIAKAKEASQTLES 334
Query: 241 VLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKER-NE 299
VLVSGD DFV+ K+G K+PVS+L GKT+LLYFSAHWCPPCRAFLPKLI+AY KIK R N+
Sbjct: 335 VLVSGDQDFVIDKDGKKIPVSELVGKTVLLYFSAHWCPPCRAFLPKLIEAYHKIKARNND 394
Query: 300 SLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 359
+LEVVFISSDRDQ SF+EFF GMPWLALPFGD RK LSRKFKVSGIP LVAIGPSG+T+
Sbjct: 395 ALEVVFISSDRDQESFNEFFAGMPWLALPFGDTRKEFLSRKFKVSGIPELVAIGPSGQTV 454
Query: 360 TKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPENVKHALHEHELVLDRCGVYSC 419
TKEAR ++ ++GA+AYPFTE+R+KEI+ Q +++AKGWPE V H HEHELVL R VY C
Sbjct: 455 TKEARGLVGLYGADAYPFTEKRIKEIEAQKDDIAKGWPEKVTHETHEHELVLSRRNVYCC 514
Query: 420 DGCDEEGRVWAFSCDECDFCLHPNCALGEDKGTKDDKSEEQNPSKEGWRCDGGLCYKG 477
DGC +EG W++ C ECDF LHPNCALG DKG+ + EE+ P K+GW CDG +C K
Sbjct: 515 DGCKDEGDTWSYLCAECDFDLHPNCALG-DKGSINGAKEEEKP-KDGWVCDGDVCTKA 570
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147778402|emb|CAN63033.1| hypothetical protein VITISV_044051 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/478 (69%), Positives = 406/478 (84%), Gaps = 4/478 (0%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVE 60
MPWLA+PFSDS+TRD L +LFKV GIP L +LDE+GKVLS GVEII++YGVEGYPFT E
Sbjct: 96 MPWLAIPFSDSDTRDHLKKLFKVRGIPSLAMLDESGKVLSSEGVEIIKDYGVEGYPFTAE 155
Query: 61 RIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKAS 120
+IKE+KE+EE AK+EQSL S+L S SRD+VIS+DG+++ VS+LEGK +GLYFS+SS K
Sbjct: 156 KIKELKEKEETAKKEQSLISILVSQSRDYVISTDGKRVPVSELEGKFVGLYFSLSSSKPR 215
Query: 121 AEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180
+FT LV+VY+KL+ KGESFEIV+ISLDDE ESFK + GSMPWLALPFKD+S +KLARY
Sbjct: 216 LQFTRTLVDVYKKLRAKGESFEIVMISLDDEIESFKTNFGSMPWLALPFKDRSCKKLARY 275
Query: 181 FELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLES 240
FELS LPTLV+IGPDGKTLHSNVAEAI+EHG+ A+PFTPEKFAEL EI++AK E+QTLES
Sbjct: 276 FELSALPTLVVIGPDGKTLHSNVAEAIQEHGIQAYPFTPEKFAELEEIEKAKREAQTLES 335
Query: 241 VLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNES 300
+LVSG+ DFV+GK+ K+PVSDL GK ILLYFSAHWCPPCRAFLPKLI+AY+ IK ++E+
Sbjct: 336 ILVSGNRDFVIGKDRVKIPVSDLVGKNILLYFSAHWCPPCRAFLPKLIEAYQNIKAKDEA 395
Query: 301 LEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTIT 360
EV+FISSDRDQ SFDEFF GMPW ALPFGD RKASL R FKV IP L+A+ P+GRT+T
Sbjct: 396 FEVIFISSDRDQASFDEFFSGMPWXALPFGDKRKASLGRTFKVRSIPKLIAVEPTGRTVT 455
Query: 361 KEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPENVKHALH-EHELVLDRCGVYSC 419
EAR ++ +HGA+AYPFTEE +KEI+ QY EMAKGWPE +KHALH EHELVL + G+Y C
Sbjct: 456 TEARTLVMIHGADAYPFTEEHIKEIEAQY-EMAKGWPEKMKHALHEEHELVLTKRGIYRC 514
Query: 420 DGCDEEGRVWAFSCDECDFCLHPNCALGEDKGTKDDKSEEQNPSKEGWRCDGGLCYKG 477
+GC+++G +W+F C+ECDF LHP CAL EDKG+K+D EE+ EGW+CDG +C +
Sbjct: 515 NGCEKQGHLWSFYCEECDFNLHPKCALEEDKGSKED--EEKARPGEGWKCDGEVCSRA 570
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18406743|ref|NP_564756.1| putative nucleoredoxin 1 [Arabidopsis thaliana] gi|75318691|sp|O80763.1|NRX1_ARATH RecName: Full=Probable nucleoredoxin 1; Short=AtNrx1 gi|3249084|gb|AAC24068.1| Similar to red-1 (related to thioredoxin) gene gb|X92750 from Mus musculus. ESTs gb|AA712687 and gb|Z37223 come from this gene [Arabidopsis thaliana] gi|17529294|gb|AAL38874.1| unknown protein [Arabidopsis thaliana] gi|21436119|gb|AAM51306.1| unknown protein [Arabidopsis thaliana] gi|332195563|gb|AEE33684.1| putative nucleoredoxin 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/480 (65%), Positives = 397/480 (82%), Gaps = 3/480 (0%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVE 60
MPWLAVPF+DSETRD+LDELFKV GIP+LV++D++GK++++ GV +IR YG + YPFT E
Sbjct: 99 MPWLAVPFTDSETRDRLDELFKVRGIPNLVMVDDHGKLVNENGVGVIRSYGADAYPFTPE 158
Query: 61 RIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKAS 120
++KE+KE E+RA+R Q+LRSVL + SRDFVIS DG K+ VS+LEGKTIGL FS++SY+
Sbjct: 159 KMKEIKEDEDRARRGQTLRSVLVTPSRDFVISPDGNKVPVSELEGKTIGLLFSVASYRKC 218
Query: 121 AEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180
E TP+LVE Y KLK E FEIVLISL+D+EESF +D + PWLALPF DKS KLAR+
Sbjct: 219 TELTPKLVEFYTKLKENKEDFEIVLISLEDDEESFNQDFKTKPWLALPFNDKSGSKLARH 278
Query: 181 FELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLES 240
F LSTLPTLVI+GPDGKT HSNVAEAI+++GV A+PFTPEKF EL E+++AK E+QTLES
Sbjct: 279 FMLSTLPTLVILGPDGKTRHSNVAEAIDDYGVLAYPFTPEKFQELKELEKAKVEAQTLES 338
Query: 241 VLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNES 300
+LVSGDL++V+GK+G KV VSDL GKTIL+YFSAHWCPPCRAF PKL++ YK+IKERNE+
Sbjct: 339 LLVSGDLNYVLGKDGAKVLVSDLVGKTILMYFSAHWCPPCRAFTPKLVEVYKQIKERNEA 398
Query: 301 LEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTIT 360
E++FISSDRDQ SFDE++ MPWLALPFGD RKASL++ FKV GIPML A+GP+G+T+T
Sbjct: 399 FELIFISSDRDQESFDEYYSQMPWLALPFGDPRKASLAKTFKVGGIPMLAALGPTGQTVT 458
Query: 361 KEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPENVKHALH-EHELVLDRCGVYSC 419
KEARD++ HGA+AYPFTEER+KEI+ +Y+E+AK WP+ VKH LH EHEL L R VY+C
Sbjct: 459 KEARDLVVAHGADAYPFTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTC 518
Query: 420 DGCDEEGRVWAFSCDECDFCLHPNCALGEDKGTKDDKSEE--QNPSKEGWRCDGGLCYKG 477
D C+EEG +W++ CDECDF LH CAL ED D++ + + SK+GW C+G +C K
Sbjct: 519 DKCEEEGTIWSYHCDECDFDLHAKCALNEDTKENGDEAVKVGGDESKDGWVCEGNVCTKA 578
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 477 | ||||||
| TAIR|locus:2195623 | 578 | AT1G60420 [Arabidopsis thalian | 0.997 | 0.823 | 0.659 | 6.3e-179 | |
| TAIR|locus:2128141 | 392 | AT4G31240 [Arabidopsis thalian | 0.777 | 0.946 | 0.407 | 3.9e-76 | |
| RGD|1310489 | 435 | Nxn "nucleoredoxin" [Rattus no | 0.297 | 0.326 | 0.372 | 4.7e-41 | |
| UNIPROTKB|A6QLU8 | 435 | NXN "Nucleoredoxin" [Bos tauru | 0.297 | 0.326 | 0.372 | 5e-41 | |
| MGI|MGI:109331 | 435 | Nxn "nucleoredoxin" [Mus muscu | 0.297 | 0.326 | 0.372 | 7.6e-41 | |
| UNIPROTKB|Q6DKJ4 | 435 | NXN "Nucleoredoxin" [Homo sapi | 0.297 | 0.326 | 0.372 | 8e-41 | |
| ZFIN|ZDB-GENE-050522-75 | 418 | nxn "nucleoredoxin" [Danio rer | 0.251 | 0.287 | 0.411 | 1.6e-38 | |
| UNIPROTKB|Q6GM16 | 414 | nxn "Nucleoredoxin" [Xenopus l | 0.285 | 0.328 | 0.362 | 1e-36 | |
| UNIPROTKB|I3LEF2 | 328 | NXN "Uncharacterized protein" | 0.297 | 0.432 | 0.372 | 2e-31 | |
| UNIPROTKB|F1NG23 | 328 | NXN "Uncharacterized protein" | 0.255 | 0.371 | 0.412 | 1.2e-29 |
| TAIR|locus:2195623 AT1G60420 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1737 (616.5 bits), Expect = 6.3e-179, P = 6.3e-179
Identities = 316/479 (65%), Positives = 397/479 (82%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVE 60
MPWLAVPF+DSETRD+LDELFKV GIP+LV++D++GK++++ GV +IR YG + YPFT E
Sbjct: 99 MPWLAVPFTDSETRDRLDELFKVRGIPNLVMVDDHGKLVNENGVGVIRSYGADAYPFTPE 158
Query: 61 RIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKAS 120
++KE+KE E+RA+R Q+LRSVL + SRDFVIS DG K+ VS+LEGKTIGL FS++SY+
Sbjct: 159 KMKEIKEDEDRARRGQTLRSVLVTPSRDFVISPDGNKVPVSELEGKTIGLLFSVASYRKC 218
Query: 121 AEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180
E TP+LVE Y KLK E FEIVLISL+D+EESF +D + PWLALPF DKS KLAR+
Sbjct: 219 TELTPKLVEFYTKLKENKEDFEIVLISLEDDEESFNQDFKTKPWLALPFNDKSGSKLARH 278
Query: 181 FELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLES 240
F LSTLPTLVI+GPDGKT HSNVAEAI+++GV A+PFTPEKF EL E+++AK E+QTLES
Sbjct: 279 FMLSTLPTLVILGPDGKTRHSNVAEAIDDYGVLAYPFTPEKFQELKELEKAKVEAQTLES 338
Query: 241 VLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNES 300
+LVSGDL++V+GK+G KV VSDL GKTIL+YFSAHWCPPCRAF PKL++ YK+IKERNE+
Sbjct: 339 LLVSGDLNYVLGKDGAKVLVSDLVGKTILMYFSAHWCPPCRAFTPKLVEVYKQIKERNEA 398
Query: 301 LEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTIT 360
E++FISSDRDQ SFDE++ MPWLALPFGD RKASL++ FKV GIPML A+GP+G+T+T
Sbjct: 399 FELIFISSDRDQESFDEYYSQMPWLALPFGDPRKASLAKTFKVGGIPMLAALGPTGQTVT 458
Query: 361 KEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPENVKHALHE-HELVLDRCGVYSC 419
KEARD++ HGA+AYPFTEER+KEI+ +Y+E+AK WP+ VKH LHE HEL L R VY+C
Sbjct: 459 KEARDLVVAHGADAYPFTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTC 518
Query: 420 DGCDEEGRVWAFSCDECDFCLHPNCALGEDKGTKDDKSEEQ--NPSKEGWRCDGGLCYK 476
D C+EEG +W++ CDECDF LH CAL ED D++ + + SK+GW C+G +C K
Sbjct: 519 DKCEEEGTIWSYHCDECDFDLHAKCALNEDTKENGDEAVKVGGDESKDGWVCEGNVCTK 577
|
|
| TAIR|locus:2128141 AT4G31240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
Identities = 152/373 (40%), Positives = 221/373 (59%)
Query: 78 LRSVLTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGK 137
L S+L + +F++S G ++ + + GKTI L+FS + +FTP L+++YE L+ +
Sbjct: 17 LYSILAAEGIEFLLSHSG-EVPLEYIHGKTICLFFSAIWCRPCKDFTPELIKLYENLQNR 75
Query: 138 GESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGK 197
GE EI+ +S D + SF MPWLA+PF KL + +S +P+LV + D
Sbjct: 76 GEELEIIFVSFDHDMTSFYEHFWCMPWLAVPFNLSLLNKLRDKYGISRIPSLVPLYSDEI 135
Query: 198 TLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGK 257
++ +V IE++G AFPFT ++ EL I +K LE +L ++VV +NG K
Sbjct: 136 SVAEDVIGLIEDYGSEAFPFTKKRKEELKAIDDSKRLGGQLEKLLTHESRNYVVARNGSK 195
Query: 258 VPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNE-SLEVVFISSDRDQTSFD 316
V VS L GKTI LYF AHWCPP R+F +L+D Y ++ ++ S EV+ IS+DRD F+
Sbjct: 196 VLVSKLVGKTIGLYFGAHWCPPFRSFTSQLVDVYNELATTDKGSFEVILISTDRDSREFN 255
Query: 317 EFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYP 376
MPWLA+P+ D + L R F V IP LV IGP +T+T AR+M++++G+ ++P
Sbjct: 256 INMTNMPWLAIPYEDRTRQDLCRIFNVKLIPALVIIGPEEKTVTTNAREMVSLYGSRSFP 315
Query: 377 FTEERMKEIDGQYNEMAKGWPENVKHALHEHELVLDRCGVYSCDGCDEEGRVWAFSCDEC 436
FTE R+ E+ + P VK HEHEL LD Y CD C ++GR WAFSC+ C
Sbjct: 316 FTESRIVELKACLKKEGDSLPRKVKDNKHEHELKLDMAKAYVCDFCKKQGRFWAFSCNAC 375
Query: 437 DFCLHPNCALGED 449
D+ LHP C E+
Sbjct: 376 DYDLHPTCVEEEE 388
|
|
| RGD|1310489 Nxn "nucleoredoxin" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 304 (112.1 bits), Expect = 4.7e-41, Sum P(3) = 4.7e-41
Identities = 54/145 (37%), Positives = 92/145 (63%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 313
NG + S L G + +YFSAHWCPPCR+ L+++Y+KIKE + E++F+S+DR +
Sbjct: 182 NGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEIIFVSADRSEE 241
Query: 314 SFDEFFKGMPWLALPFGD-ARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR-DMIAVHG 371
SF ++F MPWLA+P+ D AR++ L+R + + GIP L+ + P G IT++ R +++
Sbjct: 242 SFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEVLNDED 301
Query: 372 AEAYPFTEERMKEI-DGQYNEMAKG 395
+P+ + + E+ D ++ +G
Sbjct: 302 CREFPWHPKPVLELSDSNAVQLNEG 326
|
|
| UNIPROTKB|A6QLU8 NXN "Nucleoredoxin" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 305 (112.4 bits), Expect = 5.0e-41, Sum P(3) = 5.0e-41
Identities = 54/145 (37%), Positives = 92/145 (63%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 313
NG + S L G + +YFSAHWCPPCR+ L+++Y+KIKE + E++F+S+DR +
Sbjct: 182 NGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEIIFVSADRSED 241
Query: 314 SFDEFFKGMPWLALPFGD-ARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR-DMIAVHG 371
SF ++F MPWLA+P+ D AR++ L+R + + GIP L+ + P G IT++ R +++
Sbjct: 242 SFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEVLNDED 301
Query: 372 AEAYPFTEERMKEI-DGQYNEMAKG 395
+P+ + + E+ D ++ +G
Sbjct: 302 CRGFPWHPKPVLELSDSNAVQLNEG 326
|
|
| MGI|MGI:109331 Nxn "nucleoredoxin" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 304 (112.1 bits), Expect = 7.6e-41, Sum P(3) = 7.6e-41
Identities = 54/145 (37%), Positives = 92/145 (63%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 313
NG + S L G + +YFSAHWCPPCR+ L+++Y+KIKE + E++F+S+DR +
Sbjct: 182 NGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQEFEIIFVSADRSEE 241
Query: 314 SFDEFFKGMPWLALPFGD-ARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR-DMIAVHG 371
SF ++F MPWLA+P+ D AR++ L+R + + GIP L+ + P G IT++ R +++
Sbjct: 242 SFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEVLNDED 301
Query: 372 AEAYPFTEERMKEI-DGQYNEMAKG 395
+P+ + + E+ D ++ +G
Sbjct: 302 CREFPWHPKPVLELSDSNAVQLNEG 326
|
|
| UNIPROTKB|Q6DKJ4 NXN "Nucleoredoxin" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 305 (112.4 bits), Expect = 8.0e-41, Sum P(3) = 8.0e-41
Identities = 54/145 (37%), Positives = 93/145 (64%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 313
NG + S L G + +YFSAHWCPPCR+ L+++Y+KIKE ++ E++F+S+DR +
Sbjct: 182 NGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQNFEIIFVSADRSEE 241
Query: 314 SFDEFFKGMPWLALPFGD-ARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR-DMIAVHG 371
SF ++F MPWLA+P+ D AR++ L+R + + GIP L+ + P G IT++ R +++
Sbjct: 242 SFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIMLDPQGEVITRQGRVEVLNDED 301
Query: 372 AEAYPFTEERMKEI-DGQYNEMAKG 395
+P+ + + E+ D ++ +G
Sbjct: 302 CREFPWHPKPVLELSDSNAAQLNEG 326
|
|
| ZFIN|ZDB-GENE-050522-75 nxn "nucleoredoxin" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 282 (104.3 bits), Expect = 1.6e-38, Sum P(2) = 1.6e-38
Identities = 51/124 (41%), Positives = 80/124 (64%)
Query: 242 LVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESL 301
+VSG L + N + L G + +YFSAHWCPPCR+ L+++Y+K+KE +
Sbjct: 156 VVSGPL---LRNNRQTTDSTALEGSYVGVYFSAHWCPPCRSLTRVLVESYRKVKETGQKF 212
Query: 302 EVVFISSDRDQTSFDEFFKGMPWLALPFGD-ARKASLSRKFKVSGIPMLVAIGPSGRTIT 360
E+VF+S+DR + SF ++F MPWLA+P+ D AR++ L+R + + GIP L+ + G IT
Sbjct: 213 EIVFVSADRSEESFTQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPTLILLDTEGHMIT 272
Query: 361 KEAR 364
++ R
Sbjct: 273 RQGR 276
|
|
| UNIPROTKB|Q6GM16 nxn "Nucleoredoxin" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 284 (105.0 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 50/138 (36%), Positives = 87/138 (63%)
Query: 250 VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 309
++ N S L G + +YFSA+WCPPCR+ L+++Y+KIKE + E+V +S+D
Sbjct: 157 LIRNNSQSQESSTLEGSYVGIYFSAYWCPPCRSLTRVLVESYRKIKESGQKFEIVLVSAD 216
Query: 310 RDQTSFDEFFKGMPWLALPFGD-ARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR-DMI 367
R + SF ++F MPWLA+P+ D AR++ L+R + + GIP L+ + P G IT++ R +++
Sbjct: 217 RSEESFKQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPNLIILDPKGEVITRQGRVEVL 276
Query: 368 AVHGAEAYPFTEERMKEI 385
+ +P+ + + E+
Sbjct: 277 RDIDCKEFPWHPKPVVEL 294
|
|
| UNIPROTKB|I3LEF2 NXN "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 304 (112.1 bits), Expect = 2.0e-31, Sum P(2) = 2.0e-31
Identities = 54/145 (37%), Positives = 92/145 (63%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 313
NG + S L G + +YFSAHWCPPCR+ L+++Y+KIKE + E++F+S+DR +
Sbjct: 75 NGPALESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEIIFVSADRSED 134
Query: 314 SFDEFFKGMPWLALPFGD-ARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR-DMIAVHG 371
SF ++F MPWLA+P+ D AR++ L+R + + GIP L+ + P G IT++ R +++
Sbjct: 135 SFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEVLNDED 194
Query: 372 AEAYPFTEERMKEI-DGQYNEMAKG 395
+P+ + + E+ D ++ +G
Sbjct: 195 CRGFPWHPKPVLELSDSNAVQLNEG 219
|
|
| UNIPROTKB|F1NG23 NXN "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 290 (107.1 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
Identities = 52/126 (41%), Positives = 83/126 (65%)
Query: 240 SVLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNE 299
S +V+G L + NG + S L G + +YFSAHWCPPCR+ L+++Y+KIKE +
Sbjct: 64 SEVVAGPL---LRNNGQTLDSSALEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQ 120
Query: 300 SLEVVFISSDRDQTSFDEFFKGMPWLALPFGD-ARKASLSRKFKVSGIPMLVAIGPSGRT 358
E++F+S+DR + SF ++F MPW+A+P+ D AR++ L+R + + GIP L+ + G
Sbjct: 121 KFEILFVSADRSEDSFKQYFSEMPWVAVPYADEARRSRLNRLYGIQGIPTLIVLDSQGEV 180
Query: 359 ITKEAR 364
IT++ R
Sbjct: 181 ITRQGR 186
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7Y0E8 | NRX11_ORYSJ | 1, ., 8, ., 1, ., 8 | 0.5867 | 0.9895 | 0.8295 | yes | no |
| O80763 | NRX1_ARATH | 1, ., 8, ., 1, ., 8 | 0.6583 | 1.0 | 0.8252 | yes | no |
| Q7Y0F2 | NRX12_ORYSJ | 1, ., 8, ., 1, ., 8 | 0.5867 | 0.9958 | 0.8175 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 477 | |||
| cd03009 | 131 | cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-l | 4e-71 | |
| cd02964 | 132 | cd02964, TryX_like_family, Tryparedoxin (TryX)-lik | 2e-58 | |
| cd03009 | 131 | cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-l | 1e-46 | |
| cd02964 | 132 | cd02964, TryX_like_family, Tryparedoxin (TryX)-lik | 5e-37 | |
| pfam13905 | 94 | pfam13905, Thioredoxin_8, Thioredoxin-like | 3e-27 | |
| pfam13905 | 94 | pfam13905, Thioredoxin_8, Thioredoxin-like | 2e-22 | |
| cd03009 | 131 | cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-l | 1e-20 | |
| cd03008 | 146 | cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like | 5e-18 | |
| cd02966 | 116 | cd02966, TlpA_like_family, TlpA-like family; compo | 3e-17 | |
| cd02964 | 132 | cd02964, TryX_like_family, Tryparedoxin (TryX)-lik | 2e-16 | |
| cd03008 | 146 | cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like | 3e-14 | |
| pfam00578 | 124 | pfam00578, AhpC-TSA, AhpC/TSA family | 3e-10 | |
| pfam00578 | 124 | pfam00578, AhpC-TSA, AhpC/TSA family | 7e-10 | |
| pfam13098 | 105 | pfam13098, Thioredoxin_2, Thioredoxin-like domain | 1e-08 | |
| cd02966 | 116 | cd02966, TlpA_like_family, TlpA-like family; compo | 2e-07 | |
| cd02947 | 93 | cd02947, TRX_family, TRX family; composed of two g | 1e-06 | |
| PRK03147 | 173 | PRK03147, PRK03147, thiol-disulfide oxidoreductase | 1e-06 | |
| pfam08534 | 142 | pfam08534, Redoxin, Redoxin | 2e-06 | |
| pfam13905 | 94 | pfam13905, Thioredoxin_8, Thioredoxin-like | 3e-06 | |
| COG0526 | 127 | COG0526, TrxA, Thiol-disulfide isomerase and thior | 1e-05 | |
| PRK03147 | 173 | PRK03147, PRK03147, thiol-disulfide oxidoreductase | 2e-05 | |
| pfam07649 | 30 | pfam07649, C1_3, C1-like domain | 6e-05 | |
| cd02967 | 114 | cd02967, mauD, Methylamine utilization (mau) D fam | 2e-04 | |
| cd03011 | 123 | cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, | 4e-04 | |
| cd02968 | 142 | cd02968, SCO, SCO (an acronym for Synthesis of Cyt | 0.001 | |
| cd02971 | 140 | cd02971, PRX_family, Peroxiredoxin (PRX) family; c | 0.001 | |
| cd03008 | 146 | cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like | 0.002 | |
| cd02950 | 142 | cd02950, TxlA, TRX-like protein A (TxlA) family; T | 0.003 | |
| pfam03107 | 30 | pfam03107, C1_2, C1 domain | 0.004 | |
| cd02961 | 101 | cd02961, PDI_a_family, Protein Disulfide Isomerase | 0.004 | |
| pfam02630 | 152 | pfam02630, SCO1-SenC, SCO1/SenC | 0.004 |
| >gnl|CDD|239307 cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Score = 221 bits (565), Expect = 4e-71
Identities = 70/131 (53%), Positives = 100/131 (76%), Gaps = 1/131 (0%)
Query: 248 DFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS 307
DF++ +GGKVPVS L GKT+ LYFSA WCPPCRAF PKL++ Y+K+KE ++ E+VFIS
Sbjct: 1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFIS 60
Query: 308 SDRDQTSFDEFFKGMPWLALPFGD-ARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDM 366
DRD+ SF+++F MPWLA+PF D R++ L+R FK+ GIP L+ + G +T +AR++
Sbjct: 61 WDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDAREL 120
Query: 367 IAVHGAEAYPF 377
+ +GA+A+PF
Sbjct: 121 VLEYGADAFPF 131
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the vertebrate NRX by about 100-200 amino acids, is a nuclear protein containing a redox inactive TRX-like domain between two redox active TRX domains. Both vertebrate and plant NRXs show thiol oxidoreductase activity in vitro. Their localization in the nucleus suggests a role in the redox regulation of nuclear proteins such as transcription factors. Length = 131 |
| >gnl|CDD|239262 cd02964, TryX_like_family, Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 2e-58
Identities = 66/128 (51%), Positives = 87/128 (67%), Gaps = 3/128 (2%)
Query: 253 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 312
G VPVS L GKT+ LYFSA WCPPCRAF PKL++ Y+K+KE ++ E+VF+S DR +
Sbjct: 5 DGEGVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSE 64
Query: 313 TSFDEFFKGM-PWLALPFGD-ARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMI-AV 369
SF+E+F M PWLA+PF D + L ++FKV GIP LV + P G +T ARD +
Sbjct: 65 ESFNEYFSEMPPWLAVPFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEED 124
Query: 370 HGAEAYPF 377
GA A+P+
Sbjct: 125 PGACAFPW 132
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. Length = 132 |
| >gnl|CDD|239307 cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 1e-46
Identities = 66/131 (50%), Positives = 89/131 (67%), Gaps = 1/131 (0%)
Query: 88 DFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLIS 147
DF++ +DG K+ VS LEGKT+GLYFS S FTP+LVE YEKLK G++FEIV IS
Sbjct: 1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFIS 60
Query: 148 LDDEEESFKRDLGSMPWLALPFKDKS-REKLARYFELSTLPTLVIIGPDGKTLHSNVAEA 206
D +EESF MPWLA+PF D+ R +L R F++ +PTL+I+ DG+ + ++ E
Sbjct: 61 WDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDAREL 120
Query: 207 IEEHGVGAFPF 217
+ E+G AFPF
Sbjct: 121 VLEYGADAFPF 131
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the vertebrate NRX by about 100-200 amino acids, is a nuclear protein containing a redox inactive TRX-like domain between two redox active TRX domains. Both vertebrate and plant NRXs show thiol oxidoreductase activity in vitro. Their localization in the nucleus suggests a role in the redox regulation of nuclear proteins such as transcription factors. Length = 131 |
| >gnl|CDD|239262 cd02964, TryX_like_family, Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 5e-37
Identities = 63/133 (47%), Positives = 87/133 (65%), Gaps = 4/133 (3%)
Query: 88 DFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLIS 147
F++ +G + VS LEGKT+GLYFS S FTP+LVE YEKLK +G++FEIV +S
Sbjct: 1 LFLLDGEG-VVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVS 59
Query: 148 LDDEEESFKRDLGSM-PWLALPFKDKS-REKLARYFELSTLPTLVIIGPDGKTLHSNVAE 205
D EESF M PWLA+PF+D+ RE L + F++ +PTLV++ PDG + +N +
Sbjct: 60 RDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARD 119
Query: 206 AIEE-HGVGAFPF 217
+EE G AFP+
Sbjct: 120 EVEEDPGACAFPW 132
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. Length = 132 |
| >gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 3e-27
Identities = 44/95 (46%), Positives = 62/95 (65%), Gaps = 4/95 (4%)
Query: 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP- 323
GK +LLYF A WCPPCRAF P+L + Y+K+K+ +E+V++S DRD+ + ++ K MP
Sbjct: 1 GKVVLLYFWASWCPPCRAFTPELKELYEKLKKPK--VEIVYVSLDRDEEEWKKYLKKMPK 58
Query: 324 -WLALPFGDARKASLSRKFKVSGIPMLVAIGPSGR 357
WL +PFGD + L R + V IP LV + GR
Sbjct: 59 DWLNVPFGDKERNELLRLYGVKAIPTLVLLDKDGR 93
|
Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94 |
| >gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 2e-22
Identities = 43/95 (45%), Positives = 57/95 (60%), Gaps = 4/95 (4%)
Query: 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMP- 163
GK + LYF S FTP L E+YEKLK EIV +SLD +EE +K+ L MP
Sbjct: 1 GKVVLLYFWASWCPPCRAFTPELKELYEKLKKPK--VEIVYVSLDRDEEEWKKYLKKMPK 58
Query: 164 -WLALPFKDKSREKLARYFELSTLPTLVIIGPDGK 197
WL +PF DK R +L R + + +PTLV++ DG+
Sbjct: 59 DWLNVPFGDKERNELLRLYGVKAIPTLVLLDKDGR 93
|
Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94 |
| >gnl|CDD|239307 cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 1e-20
Identities = 30/57 (52%), Positives = 42/57 (73%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPF 57
MPWLAVPFSD E R +L+ FK+ GIP L+ILD +G+V++ E++ EYG + +PF
Sbjct: 75 MPWLAVPFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the vertebrate NRX by about 100-200 amino acids, is a nuclear protein containing a redox inactive TRX-like domain between two redox active TRX domains. Both vertebrate and plant NRXs show thiol oxidoreductase activity in vitro. Their localization in the nucleus suggests a role in the redox regulation of nuclear proteins such as transcription factors. Length = 131 |
| >gnl|CDD|239306 cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 5e-18
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 7/123 (5%)
Query: 260 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIK-----ERNESLEVVFISSDRDQTS 314
V+ L + +LL+F A P C+ F PKL D + ++ +R+ L +V++S D+ +
Sbjct: 20 VARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQ 79
Query: 315 FDEFFKGMP--WLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGA 372
+ F K MP WL LPF D + L +F V +P +V + P G + A D I G
Sbjct: 80 QESFLKDMPKKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGP 139
Query: 373 EAY 375
+
Sbjct: 140 ACF 142
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. Length = 146 |
| >gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 3e-17
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 313
+G V +SDL GK +L+ F A WCPPCRA +P+L K+ K+ +EVV ++ D D
Sbjct: 8 DGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDG--VEVVGVNVDDDDP 65
Query: 314 S-FDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 361
+ F K + P L++ + V G+P I GR +
Sbjct: 66 AAVKAFLKKYG-ITFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRAR 113
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116 |
| >gnl|CDD|239262 cd02964, TryX_like_family, Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 2e-16
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIRE-YGVEGYPF 57
PWLAVPF D E R+ L++ FKV GIP LV+L +G V++ + + E G +P+
Sbjct: 75 PPWLAVPFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. Length = 132 |
| >gnl|CDD|239306 cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 3e-14
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 100 VSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKG-----KGESFEIVLISLDDEEES 154
V+ LE + + L+F F P+L + + +L + +V +S+D E+
Sbjct: 20 VARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQ 79
Query: 155 FKRDLGSMP--WLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGV 212
+ L MP WL LPF+D+ R +L F + LPT+V++ PDG L +N + I G
Sbjct: 80 QESFLKDMPKKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGP 139
Query: 213 GAF 215
F
Sbjct: 140 ACF 142
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. Length = 146 |
| >gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 3e-10
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 248 DF-VVGKNGGKVPVSDLAGKTILLYF-SAHWCPPCRAFLPKLIDAYKKIKERNESLEVVF 305
DF + +G +V +SD GK ++L+F + P C LP L D Y++ K+ +EV+
Sbjct: 7 DFELPDLDGKEVSLSDYKGKWVVLFFYPKDFTPVCTTELPALADLYEEFKKLG--VEVLG 64
Query: 306 ISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAI 352
+S D S +F + + L P +++ + V +A+
Sbjct: 65 VSVD-SPESHKKFAEKLG-LPFPLLSDPDGEVAKAYGVLNEEEGLAL 109
|
This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124 |
| >gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 7e-10
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 28/130 (21%)
Query: 88 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTP-------RLVEVYEKLKGKGE 139
DF + DG+++S+SD +GK + L+F Y +FTP L ++YE+ K G
Sbjct: 7 DFELPDLDGKEVSLSDYKGKWVVLFF----Y--PKDFTPVCTTELPALADLYEEFKKLG- 59
Query: 140 SFEIVLISLDDEE--ESFKRDLG-SMPWLALPFKDKSRE-----KLARYFELSTLPTLVI 191
E++ +S+D E + F LG P L+ D E + E L T +
Sbjct: 60 -VEVLGVSVDSPESHKKFAEKLGLPFPLLS----DPDGEVAKAYGVLNEEEGLALRTTFV 114
Query: 192 IGPDGKTLHS 201
I PDGK +
Sbjct: 115 IDPDGKIRYI 124
|
This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124 |
| >gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-08
Identities = 18/97 (18%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW 324
GK +L+ F+ CP C+ +L+ + ++ V++++ D +
Sbjct: 5 GKPVLVVFTDPDCPYCKKLHKELLKDPDVQEYLKDNFVVIYVNVDDSK----------EV 54
Query: 325 LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 361
+ L+RK+ V G P +V + G+ + +
Sbjct: 55 TDFDGETLSEKELARKYGVRGTPTIVFLDGDGKEVAR 91
|
Length = 105 |
| >gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-07
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 12/115 (10%)
Query: 94 DGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEE 153
DG+ +S+SDL+GK + + F S P L + ++ K G E+V +++DD++
Sbjct: 8 DGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDG--VEVVGVNVDDDDP 65
Query: 154 ----SFKRDLGSMPWLALP-FKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203
+F + G + P D E LA+ + + LPT +I DG+ +V
Sbjct: 66 AAVKAFLKKYG----ITFPVLLDPDGE-LAKAYGVRGLPTTFLIDRDGRIRARHV 115
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116 |
| >gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 1e-06
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 27/90 (30%)
Query: 263 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 322
+ K +++ F A WC PC+A P L +++ E ++ V + D +
Sbjct: 8 KSAKPVVVDFWAPWCGPCKAIAPVL----EELAEEYPKVKFVKVDVDENP---------- 53
Query: 323 PWLALPFGDARKASLSRKFKVSGIPMLVAI 352
L+ ++ V IP +
Sbjct: 54 -------------ELAEEYGVRSIPTFLFF 70
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93 |
| >gnl|CDD|179545 PRK03147, PRK03147, thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-06
Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 15/138 (10%)
Query: 248 DFVVGK-NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI 306
+FV+ G K+ + DL GK + L F WC PC +P + + Y K KE + +E++ +
Sbjct: 43 NFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKE--KGVEIIAV 100
Query: 307 SSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDM 366
+ D + + F L P + + + V +P I G+ + +M
Sbjct: 101 NVDETELAVKNFVNRYG-LTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEM 159
Query: 367 IAVHGAEAYPFTEERMKE 384
TEE+++E
Sbjct: 160 -----------TEEQLEE 166
|
Length = 173 |
| >gnl|CDD|219888 pfam08534, Redoxin, Redoxin | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 251 VGKNGGKVPVSDLAGKTILLYF-SAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 309
V +G V +SD GK ++L F +CP C A P L K K + ++VV +++
Sbjct: 13 VALDGKTVSLSDFKGKKVVLNFWPGAFCPTCSAEHPYLEKLSKLYKAKG--VDVVAVNAS 70
Query: 310 RDQTSFDEF 318
D F
Sbjct: 71 NDPFFVMNF 79
|
This family of redoxins includes peroxiredoxin, thioredoxin and glutaredoxin proteins. Length = 142 |
| >gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-06
Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKV 38
WL VPF D E R++L L+ V IP LV+LD++G+V
Sbjct: 58 KDWLNVPFGDKE-RNELLRLYGVKAIPTLVLLDKDGRV 94
|
Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94 |
| >gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Score = 44.5 bits (104), Expect = 1e-05
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 255 GGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD 311
G + +S+L GK +L+ F A WCPPCRA P L + ++ E + V + D
Sbjct: 22 GAPLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPD 78
|
Length = 127 |
| >gnl|CDD|179545 PRK03147, PRK03147, thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 12/115 (10%)
Query: 88 DFVISS-DGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLI 146
+FV++ +G+KI + DL+GK + L F + K + P + E+Y K K KG EI+ +
Sbjct: 43 NFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKG--VEIIAV 100
Query: 147 SLDDEE---ESFKRDLGSMPWLALPFK-DKSREKLARYFELSTLPTLVIIGPDGK 197
++D+ E ++F G L P DK R+ + Y + LPT +I DGK
Sbjct: 101 NVDETELAVKNFVNRYG----LTFPVAIDKGRQVIDAY-GVGPLPTTFLIDKDGK 150
|
Length = 173 |
| >gnl|CDD|219497 pfam07649, C1_3, C1-like domain | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 6e-05
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 419 CDGCDEEG-RVWAFSCDECDFCLHPNCA 445
C+ C +SC ECDF LH +CA
Sbjct: 3 CNACGLPIDGDPFYSCSECDFVLHEDCA 30
|
This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130. Length = 30 |
| >gnl|CDD|239265 cd02967, mauD, Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 2e-04
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 13/108 (12%)
Query: 255 GGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEV-VFISSDRDQT 313
GG P G+ LL+F + CP C+ LP + + R E+ + V ++SD ++
Sbjct: 16 GGISP-----GRPTLLFFLSPTCPVCKKLLPVI-----RSIARAEADWLDVVLASDGEKA 65
Query: 314 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 361
F K A P+ A L ++VS +P V + +G K
Sbjct: 66 EHQRFLKKHGLEAFPY--VLSAELGMAYQVSKLPYAVLLDEAGVIAAK 111
|
mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit. Length = 114 |
| >gnl|CDD|239309 cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 4e-04
Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 21/101 (20%)
Query: 263 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS------SDRDQTSF- 315
L+GK +L+YF A WCP CR P + + + +S D F
Sbjct: 18 LSGKPVLVYFWATWCPVCRFTSPTVNQL---------AADYPVVSVALRSGDDGAVARFM 68
Query: 316 DEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSG 356
+ G P + P +S ++ VS P +V + P G
Sbjct: 69 QKKGYGFPVINDP-----DGVISARWGVSVTPAIVIVDPGG 104
|
The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. Length = 123 |
| >gnl|CDD|239266 cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.001
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 247 LDFV-VGKNGGKVPVSDLAGKTILLYFSAHWCP-PCRAFLPKLIDAYKKIKER-NESLEV 303
DF ++G V +SDL GK +L+YF CP C L L A K++ + ++V
Sbjct: 3 PDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQV 62
Query: 304 VFISSD--RD 311
VFIS D RD
Sbjct: 63 VFISVDPERD 72
|
Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properties of Sco1 implies that it participates in signaling events rather than functioning as a chaperone that transfers copper to COX II. Length = 142 |
| >gnl|CDD|239269 cd02971, PRX_family, Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.001
Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 32/143 (22%)
Query: 88 DF-VISSDGRKISVSDLEGKTIGLYFSMSSY-KASAEFTP-------RLVEVYEKLKGKG 138
DF + ++DG ++S+SD +GK + L+F Y K FTP ++ E+ G
Sbjct: 4 DFTLPATDGGEVSLSDFKGKWVVLFF----YPKD---FTPVCTTELCAFRDLAEEFAKGG 56
Query: 139 ESFEIVLISLDDEE--ESFKRDLGSMPWLALPFKDKSREKLAR----YFELSTLPTL--- 189
E++ +S+D +++ G + + L D + A+ E S L
Sbjct: 57 --AEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDG---EFAKAYGVLIEKSAGGGLAAR 111
Query: 190 --VIIGPDGKTLHSNVAEAIEEH 210
II PDGK + V
Sbjct: 112 ATFIIDPDGKIRYVEVEPLPTGR 134
|
PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a cysteine sulfenic acid intermediate. The second step of the reaction, the resolution of the intermediate, distinguishes the different types of PRXs. The presence or absence of a second cysteine (the resolving cysteine) classifies PRXs as either belonging to the 2-cys or 1-cys type. The resolving cysteine of 2-cys PRXs is either on the same chain (atypical) or on the second chain (typical) of a functional homodimer. Structural and motif analysis of this growing family supports the need for a new classification system. The peroxidase activity of PRXs is regulated in vivo by irreversible cysteine over-oxidation into a sulfinic acid, phosphorylation and limited proteolysis. Length = 140 |
| >gnl|CDD|239306 cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Score = 38.3 bits (89), Expect = 0.002
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 1 MP--WLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYG 51
MP WL +PF D E R +L+ F V +P +V+L +G VL+ V+ I G
Sbjct: 87 MPKKWLFLPFED-EFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLG 138
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. Length = 146 |
| >gnl|CDD|239248 cd02950, TxlA, TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.003
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 30/109 (27%)
Query: 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKER-NESLEVVFISSDRDQTSFDEFFKGMP 323
GK L+ F A WC C+ P + K+K++ + + V ++ D +
Sbjct: 20 GKPTLVEFYADWCTVCQEMAPDV----AKLKQKYGDQVNFVMLNVDNPK----------- 64
Query: 324 WLALPFGDARKASLSRKFKVSGIPMLVAIG----PSGRTITKEARDMIA 368
WL +++V GIP V + G++I + + ++A
Sbjct: 65 WL----------PEIDRYRVDGIPHFVFLDREGNEEGQSIGLQPKQVLA 103
|
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. Length = 142 |
| >gnl|CDD|202539 pfam03107, C1_2, C1 domain | Back alignment and domain information |
|---|
Score = 34.5 bits (80), Expect = 0.004
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 417 YSCDGCDEE-GRVWAFSCDECDFCLHPNCA 445
+ C C + + ++C +C F LH CA
Sbjct: 1 FWCSVCRRKIDGFYFYTCKKCCFTLHVRCA 30
|
This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins. Length = 30 |
| >gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.004
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 11/57 (19%)
Query: 241 VLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKER 297
L + D +V + K +L+ F A WC C+A P+ K++K
Sbjct: 2 ELTDDNFDELVKDS-----------KDVLVEFYAPWCGHCKALAPEYEKLAKELKGD 47
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101 |
| >gnl|CDD|202321 pfam02630, SCO1-SenC, SCO1/SenC | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.004
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPP-CRAFLPKLIDAYKKIKERNESLEVVFISSD 309
NG +L GK L+YF CP C L +L D KK+K N ++ VFIS D
Sbjct: 19 NGKNFTSENLKGKLSLIYFGFTNCPDICPPALDRLTDIIKKLKAENIDVQPVFISVD 75
|
This family is involved in biogenesis of respiratory and photosynthetic systems. SCO1 is required for a post-translational step in the accumulation of subunits COXI and COXII of cytochrome c oxidase. SenC is required for optimal cytochrome c oxidase activity and maximal induction of genes encoding the light-harvesting and reaction centre complexes of R. capsulatus. Length = 152 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 477 | |||
| cd03009 | 131 | TryX_like_TryX_NRX Tryparedoxin (TryX)-like family | 99.92 | |
| cd03008 | 146 | TryX_like_RdCVF Tryparedoxin (TryX)-like family, R | 99.91 | |
| cd03009 | 131 | TryX_like_TryX_NRX Tryparedoxin (TryX)-like family | 99.91 | |
| cd03008 | 146 | TryX_like_RdCVF Tryparedoxin (TryX)-like family, R | 99.9 | |
| cd02964 | 132 | TryX_like_family Tryparedoxin (TryX)-like family; | 99.9 | |
| cd02964 | 132 | TryX_like_family Tryparedoxin (TryX)-like family; | 99.89 | |
| KOG2501 | 157 | consensus Thioredoxin, nucleoredoxin and related p | 99.88 | |
| KOG2501 | 157 | consensus Thioredoxin, nucleoredoxin and related p | 99.85 | |
| PF13905 | 95 | Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_ | 99.82 | |
| PF13905 | 95 | Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_ | 99.82 | |
| PF08534 | 146 | Redoxin: Redoxin; InterPro: IPR013740 This redoxin | 99.81 | |
| cd02967 | 114 | mauD Methylamine utilization (mau) D family; mauD | 99.8 | |
| PRK14018 | 521 | trifunctional thioredoxin/methionine sulfoxide red | 99.79 | |
| PRK15412 | 185 | thiol:disulfide interchange protein DsbE; Provisio | 99.79 | |
| cd03012 | 126 | TlpA_like_DipZ_like TlpA-like family, DipZ-like su | 99.78 | |
| cd03010 | 127 | TlpA_like_DsbE TlpA-like family, DsbE (also known | 99.78 | |
| PRK03147 | 173 | thiol-disulfide oxidoreductase; Provisional | 99.78 | |
| cd00340 | 152 | GSH_Peroxidase Glutathione (GSH) peroxidase family | 99.77 | |
| cd02969 | 171 | PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot | 99.77 | |
| PLN02399 | 236 | phospholipid hydroperoxide glutathione peroxidase | 99.77 | |
| cd02967 | 114 | mauD Methylamine utilization (mau) D family; mauD | 99.76 | |
| PF00578 | 124 | AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per | 99.76 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 99.76 | |
| PF08534 | 146 | Redoxin: Redoxin; InterPro: IPR013740 This redoxin | 99.76 | |
| PTZ00056 | 199 | glutathione peroxidase; Provisional | 99.76 | |
| PLN02412 | 167 | probable glutathione peroxidase | 99.76 | |
| TIGR00385 | 173 | dsbE periplasmic protein thiol:disulfide oxidoredu | 99.75 | |
| cd03012 | 126 | TlpA_like_DipZ_like TlpA-like family, DipZ-like su | 99.74 | |
| PRK09437 | 154 | bcp thioredoxin-dependent thiol peroxidase; Review | 99.74 | |
| KOG0190 | 493 | consensus Protein disulfide isomerase (prolyl 4-hy | 99.73 | |
| TIGR02661 | 189 | MauD methylamine dehydrogenase accessory protein M | 99.73 | |
| cd03017 | 140 | PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit | 99.73 | |
| PRK00522 | 167 | tpx lipid hydroperoxide peroxidase; Provisional | 99.72 | |
| PF00578 | 124 | AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per | 99.72 | |
| cd03010 | 127 | TlpA_like_DsbE TlpA-like family, DsbE (also known | 99.72 | |
| PRK14018 | 521 | trifunctional thioredoxin/methionine sulfoxide red | 99.71 | |
| TIGR01626 | 184 | ytfJ_HI0045 conserved hypothetical protein YtfJ-fa | 99.71 | |
| TIGR02540 | 153 | gpx7 putative glutathione peroxidase Gpx7. This mo | 99.71 | |
| cd03015 | 173 | PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2- | 99.71 | |
| cd03014 | 143 | PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical | 99.71 | |
| cd03018 | 149 | PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik | 99.7 | |
| PRK15412 | 185 | thiol:disulfide interchange protein DsbE; Provisio | 99.7 | |
| PTZ00256 | 183 | glutathione peroxidase; Provisional | 99.7 | |
| PTZ00056 | 199 | glutathione peroxidase; Provisional | 99.7 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 99.7 | |
| cd02966 | 116 | TlpA_like_family TlpA-like family; composed of Tlp | 99.7 | |
| TIGR03137 | 187 | AhpC peroxiredoxin. This gene contains two invaria | 99.69 | |
| cd00340 | 152 | GSH_Peroxidase Glutathione (GSH) peroxidase family | 99.69 | |
| cd03011 | 123 | TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso | 99.69 | |
| PLN02399 | 236 | phospholipid hydroperoxide glutathione peroxidase | 99.68 | |
| TIGR02661 | 189 | MauD methylamine dehydrogenase accessory protein M | 99.68 | |
| PRK03147 | 173 | thiol-disulfide oxidoreductase; Provisional | 99.68 | |
| COG1225 | 157 | Bcp Peroxiredoxin [Posttranslational modification, | 99.67 | |
| cd02969 | 171 | PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot | 99.67 | |
| PLN02412 | 167 | probable glutathione peroxidase | 99.67 | |
| PRK00522 | 167 | tpx lipid hydroperoxide peroxidase; Provisional | 99.67 | |
| cd03014 | 143 | PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical | 99.67 | |
| cd02971 | 140 | PRX_family Peroxiredoxin (PRX) family; composed of | 99.66 | |
| PRK10382 | 187 | alkyl hydroperoxide reductase subunit C; Provision | 99.66 | |
| cd02968 | 142 | SCO SCO (an acronym for Synthesis of Cytochrome c | 99.65 | |
| PRK13190 | 202 | putative peroxiredoxin; Provisional | 99.65 | |
| cd02968 | 142 | SCO SCO (an acronym for Synthesis of Cytochrome c | 99.65 | |
| PRK13599 | 215 | putative peroxiredoxin; Provisional | 99.64 | |
| cd03015 | 173 | PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2- | 99.64 | |
| TIGR00385 | 173 | dsbE periplasmic protein thiol:disulfide oxidoredu | 99.64 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.63 | |
| TIGR03137 | 187 | AhpC peroxiredoxin. This gene contains two invaria | 99.63 | |
| PRK09437 | 154 | bcp thioredoxin-dependent thiol peroxidase; Review | 99.63 | |
| cd02970 | 149 | PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot | 99.63 | |
| cd03017 | 140 | PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit | 99.63 | |
| cd02950 | 142 | TxlA TRX-like protein A (TxlA) family; TxlA was or | 99.63 | |
| PTZ00256 | 183 | glutathione peroxidase; Provisional | 99.62 | |
| PRK13728 | 181 | conjugal transfer protein TrbB; Provisional | 99.62 | |
| PRK15000 | 200 | peroxidase; Provisional | 99.62 | |
| cd03018 | 149 | PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik | 99.62 | |
| cd03016 | 203 | PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub | 99.61 | |
| cd02966 | 116 | TlpA_like_family TlpA-like family; composed of Tlp | 99.61 | |
| KOG0191 | 383 | consensus Thioredoxin/protein disulfide isomerase | 99.6 | |
| PRK10382 | 187 | alkyl hydroperoxide reductase subunit C; Provision | 99.6 | |
| PRK13191 | 215 | putative peroxiredoxin; Provisional | 99.6 | |
| TIGR02540 | 153 | gpx7 putative glutathione peroxidase Gpx7. This mo | 99.59 | |
| cd02985 | 103 | TRX_CDSP32 TRX family, chloroplastic drought-induc | 99.59 | |
| cd02971 | 140 | PRX_family Peroxiredoxin (PRX) family; composed of | 99.59 | |
| PTZ00137 | 261 | 2-Cys peroxiredoxin; Provisional | 99.58 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.58 | |
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 99.57 | |
| cd03011 | 123 | TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso | 99.57 | |
| PTZ00253 | 199 | tryparedoxin peroxidase; Provisional | 99.57 | |
| cd02954 | 114 | DIM1 Dim1 family; Dim1 is also referred to as U5 s | 99.57 | |
| PRK13190 | 202 | putative peroxiredoxin; Provisional | 99.56 | |
| PRK13599 | 215 | putative peroxiredoxin; Provisional | 99.55 | |
| cd02970 | 149 | PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot | 99.55 | |
| TIGR01626 | 184 | ytfJ_HI0045 conserved hypothetical protein YtfJ-fa | 99.54 | |
| PRK13189 | 222 | peroxiredoxin; Provisional | 99.54 | |
| PHA02278 | 103 | thioredoxin-like protein | 99.54 | |
| cd02948 | 102 | TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus | 99.54 | |
| PRK10606 | 183 | btuE putative glutathione peroxidase; Provisional | 99.53 | |
| COG1225 | 157 | Bcp Peroxiredoxin [Posttranslational modification, | 99.53 | |
| PRK15000 | 200 | peroxidase; Provisional | 99.52 | |
| KOG0910 | 150 | consensus Thioredoxin-like protein [Posttranslatio | 99.52 | |
| TIGR02738 | 153 | TrbB type-F conjugative transfer system pilin asse | 99.51 | |
| PTZ00137 | 261 | 2-Cys peroxiredoxin; Provisional | 99.5 | |
| PRK13728 | 181 | conjugal transfer protein TrbB; Provisional | 99.5 | |
| cd02963 | 111 | TRX_DnaJ TRX domain, DnaJ domain containing protei | 99.49 | |
| PRK13191 | 215 | putative peroxiredoxin; Provisional | 99.49 | |
| cd02999 | 100 | PDI_a_ERp44_like PDIa family, endoplasmic reticulu | 99.49 | |
| cd02956 | 96 | ybbN ybbN protein family; ybbN is a hypothetical p | 99.47 | |
| PTZ00253 | 199 | tryparedoxin peroxidase; Provisional | 99.47 | |
| cd03003 | 101 | PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam | 99.46 | |
| KOG0907 | 106 | consensus Thioredoxin [Posttranslational modificat | 99.46 | |
| cd03016 | 203 | PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub | 99.45 | |
| cd02951 | 125 | SoxW SoxW family; SoxW is a bacterial periplasmic | 99.44 | |
| PRK13189 | 222 | peroxiredoxin; Provisional | 99.43 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 99.43 | |
| cd03006 | 113 | PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil | 99.43 | |
| PRK09381 | 109 | trxA thioredoxin; Provisional | 99.41 | |
| cd02950 | 142 | TxlA TRX-like protein A (TxlA) family; TxlA was or | 99.4 | |
| TIGR02738 | 153 | TrbB type-F conjugative transfer system pilin asse | 99.39 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 99.38 | |
| cd03000 | 104 | PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o | 99.38 | |
| cd02953 | 104 | DsbDgamma DsbD gamma family; DsbD gamma is the C-t | 99.37 | |
| cd02985 | 103 | TRX_CDSP32 TRX family, chloroplastic drought-induc | 99.36 | |
| cd02994 | 101 | PDI_a_TMX PDIa family, TMX subfamily; composed of | 99.36 | |
| PRK10996 | 139 | thioredoxin 2; Provisional | 99.36 | |
| cd03005 | 102 | PDI_a_ERp46 PDIa family, endoplasmic reticulum pro | 99.36 | |
| cd02996 | 108 | PDI_a_ERp44 PDIa family, endoplasmic reticulum pro | 99.36 | |
| PTZ00062 | 204 | glutaredoxin; Provisional | 99.35 | |
| TIGR02740 | 271 | TraF-like TraF-like protein. This protein is relat | 99.35 | |
| cd03004 | 104 | PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam | 99.35 | |
| cd02959 | 117 | ERp19 Endoplasmic reticulum protein 19 (ERp19) fam | 99.34 | |
| cd02962 | 152 | TMX2 TMX2 family; composed of proteins similar to | 99.34 | |
| cd03013 | 155 | PRX5_like Peroxiredoxin (PRX) family, PRX5-like su | 99.34 | |
| cd02986 | 114 | DLP Dim1 family, Dim1-like protein (DLP) subfamily | 99.34 | |
| PRK10606 | 183 | btuE putative glutathione peroxidase; Provisional | 99.33 | |
| cd03002 | 109 | PDI_a_MPD1_like PDI family, MPD1-like subfamily; c | 99.32 | |
| PLN00410 | 142 | U5 snRNP protein, DIM1 family; Provisional | 99.32 | |
| COG0450 | 194 | AhpC Peroxiredoxin [Posttranslational modification | 99.31 | |
| PF13098 | 112 | Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_ | 99.31 | |
| cd02993 | 109 | PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat | 99.3 | |
| cd03065 | 120 | PDI_b_Calsequestrin_N PDIb family, Calsequestrin s | 99.3 | |
| cd02954 | 114 | DIM1 Dim1 family; Dim1 is also referred to as U5 s | 99.29 | |
| KOG0908 | 288 | consensus Thioredoxin-like protein [Posttranslatio | 99.29 | |
| PF00085 | 103 | Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio | 99.29 | |
| cd02984 | 97 | TRX_PICOT TRX domain, PICOT (for PKC-interacting c | 99.29 | |
| cd02989 | 113 | Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior | 99.28 | |
| PTZ00443 | 224 | Thioredoxin domain-containing protein; Provisional | 99.28 | |
| cd02949 | 97 | TRX_NTR TRX domain, novel NADPH thioredoxin reduct | 99.26 | |
| cd02957 | 113 | Phd_like Phosducin (Phd)-like family; composed of | 99.26 | |
| cd02965 | 111 | HyaE HyaE family; HyaE is also called HupG and Hox | 99.26 | |
| TIGR01126 | 102 | pdi_dom protein disulfide-isomerase domain. This m | 99.26 | |
| cd02999 | 100 | PDI_a_ERp44_like PDIa family, endoplasmic reticulu | 99.25 | |
| cd02992 | 114 | PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas | 99.25 | |
| PF02630 | 174 | SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam | 99.24 | |
| cd02997 | 104 | PDI_a_PDIR PDIa family, PDIR subfamily; composed o | 99.24 | |
| cd02955 | 124 | SSP411 TRX domain, SSP411 protein family; members | 99.22 | |
| PTZ00062 | 204 | glutaredoxin; Provisional | 99.22 | |
| KOG0910 | 150 | consensus Thioredoxin-like protein [Posttranslatio | 99.21 | |
| KOG0191 | 383 | consensus Thioredoxin/protein disulfide isomerase | 99.21 | |
| PTZ00051 | 98 | thioredoxin; Provisional | 99.21 | |
| cd02956 | 96 | ybbN ybbN protein family; ybbN is a hypothetical p | 99.2 | |
| TIGR01068 | 101 | thioredoxin thioredoxin. Several proteins, such as | 99.2 | |
| PHA02278 | 103 | thioredoxin-like protein | 99.2 | |
| cd02948 | 102 | TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus | 99.19 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 99.19 | |
| cd03013 | 155 | PRX5_like Peroxiredoxin (PRX) family, PRX5-like su | 99.19 | |
| TIGR02740 | 271 | TraF-like TraF-like protein. This protein is relat | 99.18 | |
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 99.18 | |
| TIGR01295 | 122 | PedC_BrcD bacteriocin transport accessory protein, | 99.18 | |
| cd02963 | 111 | TRX_DnaJ TRX domain, DnaJ domain containing protei | 99.17 | |
| COG0450 | 194 | AhpC Peroxiredoxin [Posttranslational modification | 99.17 | |
| PF02630 | 174 | SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam | 99.16 | |
| cd02951 | 125 | SoxW SoxW family; SoxW is a bacterial periplasmic | 99.15 | |
| cd02952 | 119 | TRP14_like Human TRX-related protein 14 (TRP14)-li | 99.15 | |
| cd03001 | 103 | PDI_a_P5 PDIa family, P5 subfamily; composed of eu | 99.15 | |
| cd02987 | 175 | Phd_like_Phd Phosducin (Phd)-like family, Phd subf | 99.14 | |
| cd02998 | 105 | PDI_a_ERp38 PDIa family, endoplasmic reticulum pro | 99.14 | |
| cd03003 | 101 | PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam | 99.13 | |
| cd02975 | 113 | PfPDO_like_N Pyrococcus furiosus protein disulfide | 99.12 | |
| cd02953 | 104 | DsbDgamma DsbD gamma family; DsbD gamma is the C-t | 99.11 | |
| cd02961 | 101 | PDI_a_family Protein Disulfide Isomerase (PDIa) fa | 99.09 | |
| cd03006 | 113 | PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil | 99.08 | |
| cd02962 | 152 | TMX2 TMX2 family; composed of proteins similar to | 99.07 | |
| cd03004 | 104 | PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam | 99.06 | |
| cd03000 | 104 | PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o | 99.06 | |
| cd02995 | 104 | PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain | 99.05 | |
| PF13098 | 112 | Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_ | 99.05 | |
| KOG0907 | 106 | consensus Thioredoxin [Posttranslational modificat | 99.05 | |
| cd02986 | 114 | DLP Dim1 family, Dim1-like protein (DLP) subfamily | 99.04 | |
| TIGR00424 | 463 | APS_reduc 5'-adenylylsulfate reductase, thioredoxi | 99.04 | |
| cd02988 | 192 | Phd_like_VIAF Phosducin (Phd)-like family, Viral i | 99.04 | |
| cd03002 | 109 | PDI_a_MPD1_like PDI family, MPD1-like subfamily; c | 99.03 | |
| PRK09381 | 109 | trxA thioredoxin; Provisional | 99.03 | |
| KOG0190 | 493 | consensus Protein disulfide isomerase (prolyl 4-hy | 99.02 | |
| cd03005 | 102 | PDI_a_ERp46 PDIa family, endoplasmic reticulum pro | 99.02 | |
| cd02993 | 109 | PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat | 99.01 | |
| cd02959 | 117 | ERp19 Endoplasmic reticulum protein 19 (ERp19) fam | 99.01 | |
| cd02994 | 101 | PDI_a_TMX PDIa family, TMX subfamily; composed of | 99.0 | |
| COG0386 | 162 | BtuE Glutathione peroxidase [Posttranslational mod | 98.99 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 98.99 | |
| PRK10996 | 139 | thioredoxin 2; Provisional | 98.98 | |
| cd02996 | 108 | PDI_a_ERp44 PDIa family, endoplasmic reticulum pro | 98.98 | |
| COG1999 | 207 | Uncharacterized protein SCO1/SenC/PrrC, involved i | 98.97 | |
| cd02960 | 130 | AGR Anterior Gradient (AGR) family; members of thi | 98.96 | |
| TIGR00411 | 82 | redox_disulf_1 small redox-active disulfide protei | 98.95 | |
| PLN02309 | 457 | 5'-adenylylsulfate reductase | 98.95 | |
| COG1999 | 207 | Uncharacterized protein SCO1/SenC/PrrC, involved i | 98.95 | |
| cd02949 | 97 | TRX_NTR TRX domain, novel NADPH thioredoxin reduct | 98.94 | |
| cd02947 | 93 | TRX_family TRX family; composed of two groups: Gro | 98.94 | |
| PLN00410 | 142 | U5 snRNP protein, DIM1 family; Provisional | 98.94 | |
| cd02952 | 119 | TRP14_like Human TRX-related protein 14 (TRP14)-li | 98.93 | |
| cd02992 | 114 | PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas | 98.91 | |
| KOG0912 | 375 | consensus Thiol-disulfide isomerase and thioredoxi | 98.9 | |
| PRK00293 | 571 | dipZ thiol:disulfide interchange protein precursor | 98.9 | |
| PTZ00051 | 98 | thioredoxin; Provisional | 98.89 | |
| cd02984 | 97 | TRX_PICOT TRX domain, PICOT (for PKC-interacting c | 98.88 | |
| TIGR01126 | 102 | pdi_dom protein disulfide-isomerase domain. This m | 98.87 | |
| cd02965 | 111 | HyaE HyaE family; HyaE is also called HupG and Hox | 98.87 | |
| KOG2792 | 280 | consensus Putative cytochrome C oxidase assembly p | 98.86 | |
| KOG2792 | 280 | consensus Putative cytochrome C oxidase assembly p | 98.85 | |
| PTZ00443 | 224 | Thioredoxin domain-containing protein; Provisional | 98.84 | |
| cd02982 | 103 | PDI_b'_family Protein Disulfide Isomerase (PDIb') | 98.84 | |
| cd02997 | 104 | PDI_a_PDIR PDIa family, PDIR subfamily; composed o | 98.82 | |
| cd02955 | 124 | SSP411 TRX domain, SSP411 protein family; members | 98.81 | |
| cd02957 | 113 | Phd_like Phosducin (Phd)-like family; composed of | 98.81 | |
| cd03001 | 103 | PDI_a_P5 PDIa family, P5 subfamily; composed of eu | 98.81 | |
| TIGR01068 | 101 | thioredoxin thioredoxin. Several proteins, such as | 98.8 | |
| cd02989 | 113 | Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior | 98.8 | |
| cd02998 | 105 | PDI_a_ERp38 PDIa family, endoplasmic reticulum pro | 98.8 | |
| cd03065 | 120 | PDI_b_Calsequestrin_N PDIb family, Calsequestrin s | 98.78 | |
| KOG4277 | 468 | consensus Uncharacterized conserved protein, conta | 98.77 | |
| PF00085 | 103 | Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio | 98.77 | |
| PHA02125 | 75 | thioredoxin-like protein | 98.75 | |
| cd02961 | 101 | PDI_a_family Protein Disulfide Isomerase (PDIa) fa | 98.75 | |
| cd02975 | 113 | PfPDO_like_N Pyrococcus furiosus protein disulfide | 98.74 | |
| cd02958 | 114 | UAS UAS family; UAS is a domain of unknown functio | 98.74 | |
| TIGR00412 | 76 | redox_disulf_2 small redox-active disulfide protei | 98.71 | |
| cd02973 | 67 | TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)- | 98.67 | |
| KOG0855 | 211 | consensus Alkyl hydroperoxide reductase, thiol spe | 98.67 | |
| cd03007 | 116 | PDI_a_ERp29_N PDIa family, endoplasmic reticulum p | 98.64 | |
| cd02995 | 104 | PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain | 98.63 | |
| cd02987 | 175 | Phd_like_Phd Phosducin (Phd)-like family, Phd subf | 98.62 | |
| TIGR01295 | 122 | PedC_BrcD bacteriocin transport accessory protein, | 98.62 | |
| TIGR00424 | 463 | APS_reduc 5'-adenylylsulfate reductase, thioredoxi | 98.62 | |
| KOG0852 | 196 | consensus Alkyl hydroperoxide reductase, thiol spe | 98.59 | |
| KOG1651 | 171 | consensus Glutathione peroxidase [Posttranslationa | 98.52 | |
| TIGR00411 | 82 | redox_disulf_1 small redox-active disulfide protei | 98.51 | |
| cd03026 | 89 | AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid | 98.48 | |
| PF13728 | 215 | TraF: F plasmid transfer operon protein | 98.47 | |
| PF13899 | 82 | Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_ | 98.46 | |
| KOG0908 | 288 | consensus Thioredoxin-like protein [Posttranslatio | 98.45 | |
| PLN02309 | 457 | 5'-adenylylsulfate reductase | 98.44 | |
| PRK00293 | 571 | dipZ thiol:disulfide interchange protein precursor | 98.43 | |
| KOG0852 | 196 | consensus Alkyl hydroperoxide reductase, thiol spe | 98.43 | |
| cd02947 | 93 | TRX_family TRX family; composed of two groups: Gro | 98.4 | |
| cd02988 | 192 | Phd_like_VIAF Phosducin (Phd)-like family, Viral i | 98.39 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 98.39 | |
| KOG1731 | 606 | consensus FAD-dependent sulfhydryl oxidase/quiesci | 98.37 | |
| smart00594 | 122 | UAS UAS domain. | 98.36 | |
| cd02982 | 103 | PDI_b'_family Protein Disulfide Isomerase (PDIb') | 98.36 | |
| KOG0855 | 211 | consensus Alkyl hydroperoxide reductase, thiol spe | 98.33 | |
| TIGR02739 | 256 | TraF type-F conjugative transfer system pilin asse | 98.32 | |
| PF00255 | 108 | GSHPx: Glutathione peroxidase; InterPro: IPR000889 | 98.32 | |
| cd02973 | 67 | TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)- | 98.29 | |
| TIGR00412 | 76 | redox_disulf_2 small redox-active disulfide protei | 98.27 | |
| PF07649 | 30 | C1_3: C1-like domain; InterPro: IPR011424 This sho | 98.26 | |
| PRK13703 | 248 | conjugal pilus assembly protein TraF; Provisional | 98.25 | |
| PF03190 | 163 | Thioredox_DsbH: Protein of unknown function, DUF25 | 98.23 | |
| cd02960 | 130 | AGR Anterior Gradient (AGR) family; members of thi | 98.22 | |
| COG0386 | 162 | BtuE Glutathione peroxidase [Posttranslational mod | 98.21 | |
| cd03026 | 89 | AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid | 98.18 | |
| PF14595 | 129 | Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A. | 98.17 | |
| cd02958 | 114 | UAS UAS family; UAS is a domain of unknown functio | 98.15 | |
| KOG4277 | 468 | consensus Uncharacterized conserved protein, conta | 98.15 | |
| COG0526 | 127 | TrxA Thiol-disulfide isomerase and thioredoxins [P | 98.13 | |
| PHA02125 | 75 | thioredoxin-like protein | 98.11 | |
| COG2077 | 158 | Tpx Peroxiredoxin [Posttranslational modification, | 98.08 | |
| COG2143 | 182 | Thioredoxin-related protein [Posttranslational mod | 98.08 | |
| KOG1651 | 171 | consensus Glutathione peroxidase [Posttranslationa | 98.07 | |
| cd01659 | 69 | TRX_superfamily Thioredoxin (TRX) superfamily; a l | 98.04 | |
| PF13728 | 215 | TraF: F plasmid transfer operon protein | 98.03 | |
| PF13899 | 82 | Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_ | 97.92 | |
| KOG0854 | 224 | consensus Alkyl hydroperoxide reductase, thiol spe | 97.91 | |
| PF00255 | 108 | GSHPx: Glutathione peroxidase; InterPro: IPR000889 | 97.9 | |
| KOG0911 | 227 | consensus Glutaredoxin-related protein [Posttransl | 97.86 | |
| TIGR02739 | 256 | TraF type-F conjugative transfer system pilin asse | 97.84 | |
| cd01659 | 69 | TRX_superfamily Thioredoxin (TRX) superfamily; a l | 97.84 | |
| smart00594 | 122 | UAS UAS domain. | 97.83 | |
| PF03107 | 30 | C1_2: C1 domain; InterPro: IPR004146 This short do | 97.81 | |
| PRK11509 | 132 | hydrogenase-1 operon protein HyaE; Provisional | 97.8 | |
| PF00837 | 237 | T4_deiodinase: Iodothyronine deiodinase; InterPro: | 97.78 | |
| COG2077 | 158 | Tpx Peroxiredoxin [Posttranslational modification, | 97.77 | |
| cd03007 | 116 | PDI_a_ERp29_N PDIa family, endoplasmic reticulum p | 97.76 | |
| TIGR02196 | 74 | GlrX_YruB Glutaredoxin-like protein, YruB-family. | 97.75 | |
| PF06110 | 119 | DUF953: Eukaryotic protein of unknown function (DU | 97.74 | |
| PRK13703 | 248 | conjugal pilus assembly protein TraF; Provisional | 97.73 | |
| COG4232 | 569 | Thiol:disulfide interchange protein [Posttranslati | 97.73 | |
| TIGR02200 | 77 | GlrX_actino Glutaredoxin-like protein. This family | 97.72 | |
| KOG1731 | 606 | consensus FAD-dependent sulfhydryl oxidase/quiesci | 97.71 | |
| COG0526 | 127 | TrxA Thiol-disulfide isomerase and thioredoxins [P | 97.7 | |
| KOG0912 | 375 | consensus Thiol-disulfide isomerase and thioredoxi | 97.63 | |
| KOG0854 | 224 | consensus Alkyl hydroperoxide reductase, thiol spe | 97.58 | |
| TIGR02180 | 84 | GRX_euk Glutaredoxin. This model represents eukary | 97.56 | |
| cd02991 | 116 | UAS_ETEA UAS family, ETEA subfamily; composed of p | 97.55 | |
| PF14595 | 129 | Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A. | 97.5 | |
| PRK11657 | 251 | dsbG disulfide isomerase/thiol-disulfide oxidase; | 97.5 | |
| KOG0914 | 265 | consensus Thioredoxin-like protein [Posttranslatio | 97.42 | |
| TIGR02180 | 84 | GRX_euk Glutaredoxin. This model represents eukary | 97.21 | |
| KOG3425 | 128 | consensus Uncharacterized conserved protein [Funct | 97.2 | |
| PF06110 | 119 | DUF953: Eukaryotic protein of unknown function (DU | 97.17 | |
| PRK11200 | 85 | grxA glutaredoxin 1; Provisional | 97.15 | |
| PF13192 | 76 | Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY | 97.08 | |
| PRK10877 | 232 | protein disulfide isomerase II DsbC; Provisional | 97.07 | |
| PF00462 | 60 | Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl | 97.07 | |
| COG2143 | 182 | Thioredoxin-related protein [Posttranslational mod | 97.06 | |
| TIGR02196 | 74 | GlrX_YruB Glutaredoxin-like protein, YruB-family. | 97.0 | |
| cd03020 | 197 | DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil | 96.9 | |
| PF02114 | 265 | Phosducin: Phosducin; InterPro: IPR024253 The oute | 96.9 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 96.81 | |
| PF03190 | 163 | Thioredox_DsbH: Protein of unknown function, DUF25 | 96.79 | |
| COG4232 | 569 | Thiol:disulfide interchange protein [Posttranslati | 96.69 | |
| KOG0911 | 227 | consensus Glutaredoxin-related protein [Posttransl | 96.66 | |
| TIGR02200 | 77 | GlrX_actino Glutaredoxin-like protein. This family | 96.58 | |
| cd02972 | 98 | DsbA_family DsbA family; consists of DsbA and DsbA | 96.58 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 96.57 | |
| cd02991 | 116 | UAS_ETEA UAS family, ETEA subfamily; composed of p | 96.57 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 96.54 | |
| cd03419 | 82 | GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h | 96.44 | |
| cd02976 | 73 | NrdH NrdH-redoxin (NrdH) family; NrdH is a small m | 96.43 | |
| cd02066 | 72 | GRX_family Glutaredoxin (GRX) family; composed of | 96.24 | |
| PRK11657 | 251 | dsbG disulfide isomerase/thiol-disulfide oxidase; | 96.24 | |
| PF13848 | 184 | Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_ | 96.21 | |
| PF05988 | 211 | DUF899: Bacterial protein of unknown function (DUF | 96.15 | |
| cd03020 | 197 | DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil | 96.11 | |
| COG1331 | 667 | Highly conserved protein containing a thioredoxin | 96.02 | |
| PF00837 | 237 | T4_deiodinase: Iodothyronine deiodinase; InterPro: | 95.99 | |
| TIGR02190 | 79 | GlrX-dom Glutaredoxin-family domain. This C-termin | 95.9 | |
| PF04592 | 238 | SelP_N: Selenoprotein P, N terminal region; InterP | 95.86 | |
| PRK10877 | 232 | protein disulfide isomerase II DsbC; Provisional | 95.85 | |
| PF00462 | 60 | Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl | 95.48 | |
| PHA03050 | 108 | glutaredoxin; Provisional | 95.47 | |
| PRK10329 | 81 | glutaredoxin-like protein; Provisional | 95.47 | |
| PF09695 | 160 | YtfJ_HI0045: Bacterial protein of unknown function | 95.42 | |
| PF13192 | 76 | Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY | 95.3 | |
| KOG0914 | 265 | consensus Thioredoxin-like protein [Posttranslatio | 95.26 | |
| TIGR02181 | 79 | GRX_bact Glutaredoxin, GrxC family. This family of | 95.25 | |
| cd03029 | 72 | GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb | 95.22 | |
| cd03418 | 75 | GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b | 95.22 | |
| cd02972 | 98 | DsbA_family DsbA family; consists of DsbA and DsbA | 95.22 | |
| cd03419 | 82 | GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h | 95.1 | |
| TIGR02183 | 86 | GRXA Glutaredoxin, GrxA family. This model include | 95.03 | |
| PF05988 | 211 | DUF899: Bacterial protein of unknown function (DUF | 94.99 | |
| cd03027 | 73 | GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg | 94.9 | |
| TIGR02189 | 99 | GlrX-like_plant Glutaredoxin-like family. This fam | 94.86 | |
| PF11009 | 105 | DUF2847: Protein of unknown function (DUF2847); In | 94.84 | |
| TIGR02194 | 72 | GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red | 94.77 | |
| PF05176 | 252 | ATP-synt_10: ATP10 protein; InterPro: IPR007849 Th | 94.72 | |
| PRK11200 | 85 | grxA glutaredoxin 1; Provisional | 94.66 | |
| KOG3425 | 128 | consensus Uncharacterized conserved protein [Funct | 94.57 | |
| cd03023 | 154 | DsbA_Com1_like DsbA family, Com1-like subfamily; c | 94.53 | |
| PRK10638 | 83 | glutaredoxin 3; Provisional | 94.48 | |
| cd03028 | 90 | GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte | 94.43 | |
| TIGR00365 | 97 | monothiol glutaredoxin, Grx4 family. The gene for | 94.39 | |
| COG4312 | 247 | Uncharacterized protein conserved in bacteria [Fun | 94.38 | |
| KOG1672 | 211 | consensus ATP binding protein [Posttranslational m | 94.34 | |
| PRK11509 | 132 | hydrogenase-1 operon protein HyaE; Provisional | 94.05 | |
| cd02976 | 73 | NrdH NrdH-redoxin (NrdH) family; NrdH is a small m | 94.05 | |
| PF13462 | 162 | Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV | 93.98 | |
| cd02340 | 43 | ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre | 93.94 | |
| COG0678 | 165 | AHP1 Peroxiredoxin [Posttranslational modification | 93.85 | |
| PF13848 | 184 | Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_ | 93.73 | |
| KOG3414 | 142 | consensus Component of the U4/U6.U5 snRNP/mitosis | 93.24 | |
| cd03023 | 154 | DsbA_Com1_like DsbA family, Com1-like subfamily; c | 92.88 | |
| KOG2603 | 331 | consensus Oligosaccharyltransferase, gamma subunit | 92.74 | |
| TIGR02189 | 99 | GlrX-like_plant Glutaredoxin-like family. This fam | 92.72 | |
| KOG0913 | 248 | consensus Thiol-disulfide isomerase and thioredoxi | 92.62 | |
| PHA03050 | 108 | glutaredoxin; Provisional | 92.37 | |
| PF04592 | 238 | SelP_N: Selenoprotein P, N terminal region; InterP | 92.11 | |
| COG0695 | 80 | GrxC Glutaredoxin and related proteins [Posttransl | 91.86 | |
| cd02339 | 45 | ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre | 91.86 | |
| cd03019 | 178 | DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m | 91.83 | |
| PF13462 | 162 | Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV | 91.74 | |
| KOG1752 | 104 | consensus Glutaredoxin and related proteins [Postt | 91.59 | |
| cd02983 | 130 | P5_C P5 family, C-terminal redox inactive TRX-like | 91.31 | |
| TIGR02190 | 79 | GlrX-dom Glutaredoxin-family domain. This C-termin | 91.25 | |
| TIGR02183 | 86 | GRXA Glutaredoxin, GrxA family. This model include | 90.98 | |
| PRK10824 | 115 | glutaredoxin-4; Provisional | 90.81 | |
| COG1331 | 667 | Highly conserved protein containing a thioredoxin | 90.59 | |
| COG4545 | 85 | Glutaredoxin-related protein [Posttranslational mo | 90.43 | |
| PF02966 | 133 | DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th | 89.9 | |
| PF05768 | 81 | DUF836: Glutaredoxin-like domain (DUF836); InterPr | 89.84 | |
| PRK10329 | 81 | glutaredoxin-like protein; Provisional | 89.72 | |
| PF01216 | 383 | Calsequestrin: Calsequestrin; InterPro: IPR001393 | 89.44 | |
| PF09695 | 160 | YtfJ_HI0045: Bacterial protein of unknown function | 89.16 | |
| TIGR02194 | 72 | GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red | 89.04 | |
| cd03029 | 72 | GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb | 88.87 | |
| PF00130 | 53 | C1_1: Phorbol esters/diacylglycerol binding domain | 88.73 | |
| COG4312 | 247 | Uncharacterized protein conserved in bacteria [Fun | 88.72 | |
| cd03031 | 147 | GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d | 88.52 | |
| cd02066 | 72 | GRX_family Glutaredoxin (GRX) family; composed of | 88.5 | |
| PF13778 | 118 | DUF4174: Domain of unknown function (DUF4174) | 88.48 | |
| cd03418 | 75 | GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b | 88.19 | |
| TIGR02181 | 79 | GRX_bact Glutaredoxin, GrxC family. This family of | 87.95 | |
| cd03028 | 90 | GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte | 87.4 | |
| cd03027 | 73 | GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg | 87.24 | |
| cd03019 | 178 | DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m | 87.08 | |
| PF11009 | 105 | DUF2847: Protein of unknown function (DUF2847); In | 86.95 | |
| PRK12759 | 410 | bifunctional gluaredoxin/ribonucleoside-diphosphat | 86.78 | |
| PF02114 | 265 | Phosducin: Phosducin; InterPro: IPR024253 The oute | 86.29 | |
| PF05176 | 252 | ATP-synt_10: ATP10 protein; InterPro: IPR007849 Th | 86.29 | |
| PRK10954 | 207 | periplasmic protein disulfide isomerase I; Provisi | 86.01 | |
| COG0695 | 80 | GrxC Glutaredoxin and related proteins [Posttransl | 85.24 | |
| COG0678 | 165 | AHP1 Peroxiredoxin [Posttranslational modification | 84.98 | |
| cd00029 | 50 | C1 Protein kinase C conserved region 1 (C1) . Cyst | 84.84 | |
| TIGR00365 | 97 | monothiol glutaredoxin, Grx4 family. The gene for | 84.6 | |
| KOG3414 | 142 | consensus Component of the U4/U6.U5 snRNP/mitosis | 84.22 | |
| PF13831 | 36 | PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. | 84.02 | |
| cd03073 | 111 | PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s | 83.74 | |
| cd02249 | 46 | ZZ Zinc finger, ZZ type. Zinc finger present in dy | 82.56 | |
| cd03060 | 71 | GST_N_Omega_like GST_N family, Omega-like subfamil | 80.9 | |
| KOG1752 | 104 | consensus Glutaredoxin and related proteins [Postt | 80.84 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 80.49 | |
| cd03072 | 111 | PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second | 80.04 |
| >cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-25 Score=188.95 Aligned_cols=130 Identities=51% Similarity=0.911 Sum_probs=120.6
Q ss_pred CceecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccc
Q 011791 88 DFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLAL 167 (477)
Q Consensus 88 ~fl~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~ 167 (477)
||+.+.+|+.+++++++||+|+|+||++||++|+.++|.|+++++++++++.+++|++|++|.+.+.+.++++.++|..+
T Consensus 1 ~~l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 80 (131)
T cd03009 1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAV 80 (131)
T ss_pred CcccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEc
Confidence 57789999999999999999999999999999999999999999999876556999999999999999999999999888
Q ss_pred cCCc-hhHHHHHHHcCcccCCeEEEECCCCCccccchhhHHhhcCCCCCCC
Q 011791 168 PFKD-KSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPF 217 (477)
Q Consensus 168 ~~~~-~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~i~~~g~~a~P~ 217 (477)
++.. +....+.+.|++.++|+++|+|++|+++.+++.+++..+|..+|||
T Consensus 81 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 81 PFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 8766 4456789999999999999999999999999999999999999997
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the |
| >cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-24 Score=187.88 Aligned_cols=120 Identities=31% Similarity=0.597 Sum_probs=107.7
Q ss_pred CeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcC-----CCcEEEEEEEcCCCHHHHHHhhcCCC--Ccccc
Q 011791 96 RKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGK-----GESFEIVLISLDDEEESFKRDLGSMP--WLALP 168 (477)
Q Consensus 96 ~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~-----g~~~~vv~is~D~~~~~~~~~~~~~~--~~~~~ 168 (477)
+.+++++++||+|+|+|||+||+||+.++|.|.++|++++++ +.+|+||+||.|.+.+.+.+++++++ |+.+|
T Consensus 16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p 95 (146)
T cd03008 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLP 95 (146)
T ss_pred ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeec
Confidence 355778999999999999999999999999999999998763 23599999999999888999999886 88888
Q ss_pred CCchhHHHHHHHcCcccCCeEEEECCCCCccccchhhHHhhcCCCCC
Q 011791 169 FKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAF 215 (477)
Q Consensus 169 ~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~i~~~g~~a~ 215 (477)
+.......+.+.|++.++|+++|||++|+++.++++..|+++|..+|
T Consensus 96 ~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~~ 142 (146)
T cd03008 96 FEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPACF 142 (146)
T ss_pred ccchHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHHH
Confidence 88766678999999999999999999999999999999999887654
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. |
| >cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-24 Score=184.08 Aligned_cols=130 Identities=54% Similarity=1.107 Sum_probs=119.5
Q ss_pred cceeccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCcee
Q 011791 248 DFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLAL 327 (477)
Q Consensus 248 ~f~l~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~ 327 (477)
+|..+.+|+.+++++++||++||+||++||++|+.++|.|+++++++++++.+++|++|++|.+.+++++++++++|..+
T Consensus 1 ~~l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 80 (131)
T cd03009 1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAV 80 (131)
T ss_pred CcccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEc
Confidence 45668999999999999999999999999999999999999999999876557999999999999999999999999888
Q ss_pred ccCc-chhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCC
Q 011791 328 PFGD-ARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPF 377 (477)
Q Consensus 328 p~~~-d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~ 377 (477)
|+.. +....+.+.|+|.++|+++|||++|+++.+.+++++..+|+++|||
T Consensus 81 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 81 PFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 8765 5556889999999999999999999999999999999999999986
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the |
| >cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.7e-24 Score=183.14 Aligned_cols=119 Identities=32% Similarity=0.649 Sum_probs=105.8
Q ss_pred CceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhc-----CCcEEEEEEeCCCChhHHHHHHhcCC--Cceec
Q 011791 256 GKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKER-----NESLEVVFISSDRDQTSFDEFFKGMP--WLALP 328 (477)
Q Consensus 256 ~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~-----~~~~~iv~i~~d~~~~~~~~~~~~~~--~~~~p 328 (477)
..+++++++||+|+|+|||+||++|++++|.|+++|++++++ ..+++||+|+.|.+.+.+++|+++++ |+.+|
T Consensus 16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p 95 (146)
T cd03008 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLP 95 (146)
T ss_pred ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeec
Confidence 456788999999999999999999999999999999999864 23699999999988888999999997 77888
Q ss_pred cCcchhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCC
Q 011791 329 FGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEA 374 (477)
Q Consensus 329 ~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~ 374 (477)
+..+....+.+.|+|.++|+++|||++|+|+.++++..|..+|..+
T Consensus 96 ~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~ 141 (146)
T cd03008 96 FEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPAC 141 (146)
T ss_pred ccchHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHH
Confidence 8877667899999999999999999999999999988887777443
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. |
| >cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-23 Score=177.77 Aligned_cols=128 Identities=48% Similarity=0.877 Sum_probs=113.0
Q ss_pred ceecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCC-CCccc
Q 011791 89 FVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSM-PWLAL 167 (477)
Q Consensus 89 fl~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~-~~~~~ 167 (477)
|++|.+ +++++++++||+|+|+||++||++|+.++|.|+++++++++.+.+++|++|++|.+.+.+..+++++ +|..+
T Consensus 2 ~~~~~~-~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~ 80 (132)
T cd02964 2 FLLDGE-GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAV 80 (132)
T ss_pred ccccCC-ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEee
Confidence 455666 7999999999999999999999999999999999999998763349999999999988999999988 68888
Q ss_pred cCCc-hhHHHHHHHcCcccCCeEEEECCCCCccccchhhHHh-hcCCCCCCC
Q 011791 168 PFKD-KSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIE-EHGVGAFPF 217 (477)
Q Consensus 168 ~~~~-~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~i~-~~g~~a~P~ 217 (477)
++.+ .....+.+.|++.++|+++|+|++|+++++++.+.+. ++|..+|||
T Consensus 81 ~~~d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 81 PFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred ccCcHHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 8765 3456788899999999999999999999999876665 599999997
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. |
| >cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-22 Score=173.73 Aligned_cols=127 Identities=52% Similarity=1.020 Sum_probs=111.2
Q ss_pred eeccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcC-CCceec
Q 011791 250 VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM-PWLALP 328 (477)
Q Consensus 250 ~l~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~-~~~~~p 328 (477)
.+|.+ +++++++++||++||+||++||++|+.++|.|++++++++++..+++|++|++|.+.+++++|++++ +|..++
T Consensus 3 ~~~~~-~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~ 81 (132)
T cd02964 3 LLDGE-GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVP 81 (132)
T ss_pred cccCC-ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeec
Confidence 33444 6999999999999999999999999999999999999998654479999999999888999999999 688888
Q ss_pred cCc-chhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhh-cCCCCCCC
Q 011791 329 FGD-ARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAV-HGAEAYPF 377 (477)
Q Consensus 329 ~~~-d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~-~g~~~~~~ 377 (477)
+.. .....+.+.|+|.++|+++|||++|+|+.+++...+.. +|+.+||+
T Consensus 82 ~~d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 82 FEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred cCcHHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 765 34567888999999999999999999999998887777 88888875
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. |
| >KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-22 Score=172.58 Aligned_cols=123 Identities=36% Similarity=0.643 Sum_probs=115.9
Q ss_pred eecCCCCeEecC-CCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcC--CCCcc
Q 011791 90 VISSDGRKISVS-DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGS--MPWLA 166 (477)
Q Consensus 90 l~~~~g~~v~ls-~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~--~~~~~ 166 (477)
+...+|..+..+ .++||+|++||.|.||+||+.|+|.|.++|+.+++.+.+|+||+||.|.+.+++.+++.. ++|+.
T Consensus 17 l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~ 96 (157)
T KOG2501|consen 17 LRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLA 96 (157)
T ss_pred eeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEE
Confidence 557788888887 689999999999999999999999999999999999899999999999999999999995 68999
Q ss_pred ccCCchhHHHHHHHcCcccCCeEEEECCCCCccccchhhHHhhcCC
Q 011791 167 LPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGV 212 (477)
Q Consensus 167 ~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~i~~~g~ 212 (477)
+|+.+...+++.+.|+|.++|++++++++|+++..+++..|...|.
T Consensus 97 iPf~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~ 142 (157)
T KOG2501|consen 97 IPFGDDLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS 142 (157)
T ss_pred ecCCCHHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc
Confidence 9999999999999999999999999999999999999999998874
|
|
| >KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-21 Score=163.55 Aligned_cols=120 Identities=48% Similarity=0.917 Sum_probs=113.1
Q ss_pred ccCCCceecc-cCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhc--CCCceec
Q 011791 252 GKNGGKVPVS-DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG--MPWLALP 328 (477)
Q Consensus 252 ~~~g~~~~l~-~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~--~~~~~~p 328 (477)
..+|..+..+ .++||.|++||.|.||++|+.+.|.|.++|+++++.+..++||+||.|++.+++..|+.. ++|+.+|
T Consensus 19 ~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iP 98 (157)
T KOG2501|consen 19 KQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIP 98 (157)
T ss_pred ccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEec
Confidence 7777777776 789999999999999999999999999999999988788999999999999999999995 5799999
Q ss_pred cCcchhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcC
Q 011791 329 FGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHG 371 (477)
Q Consensus 329 ~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g 371 (477)
+.++..+++.++|+|.++|++++++++|++|..++|..+...|
T Consensus 99 f~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g 141 (157)
T KOG2501|consen 99 FGDDLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGG 141 (157)
T ss_pred CCCHHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhc
Confidence 9999999999999999999999999999999999999998887
|
|
| >PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.8e-20 Score=147.35 Aligned_cols=93 Identities=38% Similarity=0.711 Sum_probs=84.8
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCC--CCccccCCchhHHHHHHHcC
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSM--PWLALPFKDKSREKLARYFE 182 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~ 182 (477)
||+++|+|||+||++|+.++|.|.+++++|++ +.++++|+|+.|.+.++++++++++ +|..+++..+....+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 79999999999999999999999999999995 4559999999999999999999987 89999999888889999999
Q ss_pred cccCCeEEEECCCCCc
Q 011791 183 LSTLPTLVIIGPDGKT 198 (477)
Q Consensus 183 v~~~P~~~lid~~G~i 198 (477)
+.++|+++|+|++|+|
T Consensus 80 i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 80 INGIPTLVLLDPDGKI 95 (95)
T ss_dssp -TSSSEEEEEETTSBE
T ss_pred CCcCCEEEEECCCCCC
Confidence 9999999999999986
|
... |
| >PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-19 Score=146.26 Aligned_cols=93 Identities=45% Similarity=0.983 Sum_probs=85.2
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcC--CCceeccCcchhHHHHHhcC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM--PWLALPFGDARKASLSRKFK 342 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~--~~~~~p~~~d~~~~l~~~~~ 342 (477)
||+++|+|||+||++|++++|.|.++++++++ +.+++||+|++|.+.++++++++++ +|..+++..+....+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 79999999999999999999999999999995 4579999999999999999999988 89999999988889999999
Q ss_pred CCCcceEEEECCCCcE
Q 011791 343 VSGIPMLVAIGPSGRT 358 (477)
Q Consensus 343 v~~~Pt~~lid~~G~i 358 (477)
|.++|+++|+|++|+|
T Consensus 80 i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 80 INGIPTLVLLDPDGKI 95 (95)
T ss_dssp -TSSSEEEEEETTSBE
T ss_pred CCcCCEEEEECCCCCC
Confidence 9999999999999986
|
... |
| >PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-19 Score=156.73 Aligned_cols=116 Identities=33% Similarity=0.622 Sum_probs=103.2
Q ss_pred cCCCccee-c--cCCCceecccCCCCEEEEEEeCC-CChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHH
Q 011791 244 SGDLDFVV-G--KNGGKVPVSDLAGKTILLYFSAH-WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 319 (477)
Q Consensus 244 ~~~p~f~l-~--~~g~~~~l~~~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~ 319 (477)
...|+|.+ + .+|+++++++++||+++|+||++ |||+|+.++|.+.+++++++++ ++.+++|+.+.+.. ..+|+
T Consensus 4 ~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~--~v~~v~v~~~~~~~-~~~~~ 80 (146)
T PF08534_consen 4 DKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK--GVDVVGVSSDDDPP-VREFL 80 (146)
T ss_dssp SB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT--TCEEEEEEESSSHH-HHHHH
T ss_pred CCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC--ceEEEEecccCCHH-HHHHH
Confidence 34588887 5 99999999999999999999999 9999999999999999999876 79999999997765 88999
Q ss_pred hcCCCceeccCcchhHHHHHhcCCC---------CcceEEEECCCCcEEEecc
Q 011791 320 KGMPWLALPFGDARKASLSRKFKVS---------GIPMLVAIGPSGRTITKEA 363 (477)
Q Consensus 320 ~~~~~~~~p~~~d~~~~l~~~~~v~---------~~Pt~~lid~~G~iv~~~~ 363 (477)
++.+ .++|+..|....+.+.|++. ++|+++|||++|+|++.+.
T Consensus 81 ~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~ 132 (146)
T PF08534_consen 81 KKYG-INFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHV 132 (146)
T ss_dssp HHTT-TTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEE
T ss_pred HhhC-CCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEe
Confidence 8866 77888888889999999998 9999999999999999843
|
Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A .... |
| >cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.1e-19 Score=149.46 Aligned_cols=110 Identities=26% Similarity=0.489 Sum_probs=95.9
Q ss_pred Cccee-ccCCCceecccCC-CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCC
Q 011791 247 LDFVV-GKNGGKVPVSDLA-GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW 324 (477)
Q Consensus 247 p~f~l-~~~g~~~~l~~~~-gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~ 324 (477)
|+|.+ +.+|+.+++++++ ||+++|+||++||++|+.++|.++++++++++ ++.++.++ +.+.++.++++++++.
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~---~~~vi~v~-~~~~~~~~~~~~~~~~ 76 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD---WLDVVLAS-DGEKAEHQRFLKKHGL 76 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC---CcEEEEEe-CCCHHHHHHHHHHhCC
Confidence 67888 8999999999997 99999999999999999999999999888754 47888775 6677899999999986
Q ss_pred ceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEec
Q 011791 325 LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 325 ~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
..+|...+ ..+.+.|++.++|++++||++|+|++++
T Consensus 77 ~~~p~~~~--~~~~~~~~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 77 EAFPYVLS--AELGMAYQVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred CCCcEEec--HHHHhhcCCCCcCeEEEECCCCeEEecc
Confidence 66776653 4588999999999999999999999874
|
mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit. |
| >PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-18 Score=177.29 Aligned_cols=128 Identities=20% Similarity=0.329 Sum_probs=108.7
Q ss_pred CCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC-----CChhHHHHH
Q 011791 245 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-----RDQTSFDEF 318 (477)
Q Consensus 245 ~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d-----~~~~~~~~~ 318 (477)
..|+|.+ +.+|+++.++ +||+|||+|||+||++|+.++|.|++++++++.+ +++||.|+++ .+..+++++
T Consensus 37 ~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~--~v~VI~Vs~~~~~~e~~~~~~~~~ 112 (521)
T PRK14018 37 TLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS--SANLITVASPGFLHEKKDGDFQKW 112 (521)
T ss_pred CCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC--CeEEEEEecccccccccHHHHHHH
Confidence 4699998 9999999988 7999999999999999999999999999998754 6899999873 234678888
Q ss_pred HhcCCCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHH
Q 011791 319 FKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDG 387 (477)
Q Consensus 319 ~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~ 387 (477)
++.+++.++|+..|....+.+.|+|+++|+++|||++|+++.+.. | ..+.+.+.++++
T Consensus 113 ~~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~-------G----~~~~eeL~a~Ie 170 (521)
T PRK14018 113 YAGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVK-------G----SISEAQALALIR 170 (521)
T ss_pred HHhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEe-------C----CCCHHHHHHHHH
Confidence 888888888999998999999999999999999999999998843 3 345555555554
|
|
| >PRK15412 thiol:disulfide interchange protein DsbE; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-18 Score=157.86 Aligned_cols=114 Identities=23% Similarity=0.249 Sum_probs=95.2
Q ss_pred ccCCCccee-ccC--CCceecccC-CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHH
Q 011791 243 VSGDLDFVV-GKN--GGKVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 318 (477)
Q Consensus 243 ~~~~p~f~l-~~~--g~~~~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~ 318 (477)
+...|+|.+ +.+ |+.++++.+ +||+++|+|||+||++|++++|.|+++++ + +++|++|+.+.+.+..++|
T Consensus 42 g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~--~~~vi~v~~~~~~~~~~~~ 115 (185)
T PRK15412 42 GKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----Q--GIRVVGMNYKDDRQKAISW 115 (185)
T ss_pred CCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----c--CCEEEEEECCCCHHHHHHH
Confidence 455689998 777 466776665 79999999999999999999999988753 2 5889999998888889999
Q ss_pred HhcCCCceec-cCcchhHHHHHhcCCCCcceEEEECCCCcEEEecc
Q 011791 319 FKGMPWLALP-FGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEA 363 (477)
Q Consensus 319 ~~~~~~~~~p-~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~ 363 (477)
+++++ ..+| +..|....+.+.|+|.++|++++||++|+|+.++.
T Consensus 116 ~~~~~-~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~~ 160 (185)
T PRK15412 116 LKELG-NPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHA 160 (185)
T ss_pred HHHcC-CCCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEEe
Confidence 99887 4455 35567778889999999999999999999998854
|
|
| >cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.6e-19 Score=149.93 Aligned_cols=106 Identities=25% Similarity=0.339 Sum_probs=96.0
Q ss_pred CCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC-----CChhHHHHHHhcCCCceecc
Q 011791 255 GGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-----RDQTSFDEFFKGMPWLALPF 329 (477)
Q Consensus 255 g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d-----~~~~~~~~~~~~~~~~~~p~ 329 (477)
|+++++++++||++||+||++||++|+.++|.|++++++|+++ ++.|++|+.+ .+.+.+++|+++++ +++|+
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~--~~~vi~i~~~~~~~~~~~~~~~~~~~~~~-~~~p~ 89 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD--GLVVIGVHSPEFAFERDLANVKSAVLRYG-ITYPV 89 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC--CeEEEEeccCccccccCHHHHHHHHHHcC-CCCCE
Confidence 5789999999999999999999999999999999999999865 7999999863 45778999999888 57899
Q ss_pred CcchhHHHHHhcCCCCcceEEEECCCCcEEEecc
Q 011791 330 GDARKASLSRKFKVSGIPMLVAIGPSGRTITKEA 363 (477)
Q Consensus 330 ~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~ 363 (477)
..|....+.+.|++.++|++++||++|+++.+..
T Consensus 90 ~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~~ 123 (126)
T cd03012 90 ANDNDYATWRAYGNQYWPALYLIDPTGNVRHVHF 123 (126)
T ss_pred EECCchHHHHHhCCCcCCeEEEECCCCcEEEEEe
Confidence 8898899999999999999999999999998853
|
Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3. |
| >cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-18 Score=148.69 Aligned_cols=112 Identities=21% Similarity=0.295 Sum_probs=98.0
Q ss_pred CCccee-ccCC--CceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcC
Q 011791 246 DLDFVV-GKNG--GKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 322 (477)
Q Consensus 246 ~p~f~l-~~~g--~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~ 322 (477)
.|+|.+ +.+| +.+++++++||+++|+||++||++|++++|.|+++.+++ +++|++|+.+.+.+++++|++++
T Consensus 3 ~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-----~~~vv~v~~~~~~~~~~~~~~~~ 77 (127)
T cd03010 3 APAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG-----RVPIYGINYKDNPENALAWLARH 77 (127)
T ss_pred CCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-----CcEEEEEECCCCHHHHHHHHHhc
Confidence 588988 8888 889999999999999999999999999999999987664 38899999988889999999988
Q ss_pred CCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEec
Q 011791 323 PWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 323 ~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
.....++..|....+++.|++.++|+++++|++|+++.+.
T Consensus 78 ~~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~~ 117 (127)
T cd03010 78 GNPYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYKH 117 (127)
T ss_pred CCCCceEEECCcchHHHhcCCCCCCeEEEECCCceEEEEE
Confidence 7533345567778899999999999999999999999874
|
Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c. |
| >PRK03147 thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-18 Score=154.51 Aligned_cols=117 Identities=24% Similarity=0.515 Sum_probs=106.8
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhc
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 321 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~ 321 (477)
+...|+|.+ +.+|+.+++++++||+++|+||++||++|+...+.+.++++++++. ++.+++|+.|.+.+++++++++
T Consensus 38 g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~--~~~vi~i~~d~~~~~~~~~~~~ 115 (173)
T PRK03147 38 GKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK--GVEIIAVNVDETELAVKNFVNR 115 (173)
T ss_pred CCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC--CeEEEEEEcCCCHHHHHHHHHH
Confidence 445589999 9999999999999999999999999999999999999999999865 6999999999888999999998
Q ss_pred CCCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEec
Q 011791 322 MPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 322 ~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
++ .++|+..|....+.+.|++.++|++++||++|+++...
T Consensus 116 ~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~ 155 (173)
T PRK03147 116 YG-LTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVI 155 (173)
T ss_pred hC-CCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEE
Confidence 87 57888888888999999999999999999999999773
|
|
| >cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.4e-19 Score=154.38 Aligned_cols=113 Identities=22% Similarity=0.330 Sum_probs=93.2
Q ss_pred Cccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC-------ChhHHHHH
Q 011791 247 LDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSFDEF 318 (477)
Q Consensus 247 p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~~~~ 318 (477)
|+|.+ +.+|+++++++++||+|||+|||+||+ |+.++|.|++++++|+++ ++.|++|++|. +.+..++|
T Consensus 3 ~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~f 79 (152)
T cd00340 3 YDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR--GLVVLGFPCNQFGGQEPGSNEEIKEF 79 (152)
T ss_pred ceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC--CEEEEEeccCccccCCCCCHHHHHHH
Confidence 78888 999999999999999999999999999 999999999999999865 69999998753 35678999
Q ss_pred Hhc-CCCceeccCcch--hHH-HHHhcC--CCCcc-----------eEEEECCCCcEEEecc
Q 011791 319 FKG-MPWLALPFGDAR--KAS-LSRKFK--VSGIP-----------MLVAIGPSGRTITKEA 363 (477)
Q Consensus 319 ~~~-~~~~~~p~~~d~--~~~-l~~~~~--v~~~P-----------t~~lid~~G~iv~~~~ 363 (477)
+++ ++ ++||+..|. ... ..+.|+ +.++| +++|||++|+|+.+..
T Consensus 80 ~~~~~~-~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~ 140 (152)
T cd00340 80 CETNYG-VTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFA 140 (152)
T ss_pred HHHhcC-CCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEEC
Confidence 986 56 678877542 222 344555 45666 8999999999999854
|
GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes. |
| >cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.3e-18 Score=152.74 Aligned_cols=146 Identities=16% Similarity=0.301 Sum_probs=119.6
Q ss_pred CCCccee-ccCCCceecccC-CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC-------ChhHH
Q 011791 245 GDLDFVV-GKNGGKVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSF 315 (477)
Q Consensus 245 ~~p~f~l-~~~g~~~~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~ 315 (477)
..|+|.+ +.+|+.++++++ +||++||+||++||+.|..+++.|.+++++|+++ ++++|+|++|. +.+++
T Consensus 3 ~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~--~v~~v~is~d~~~~~~~d~~~~~ 80 (171)
T cd02969 3 PAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK--GVAVVAINSNDIEAYPEDSPENM 80 (171)
T ss_pred cCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC--CeEEEEEecCccccccccCHHHH
Confidence 3588988 999999999998 8999999999999999999999999999999865 69999999985 56789
Q ss_pred HHHHhcCCCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcC
Q 011791 316 DEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKG 395 (477)
Q Consensus 316 ~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 395 (477)
++++++++ +.+|++.|....+.+.|++..+|+++|||++|+|++....+. ..+. .....+..++.++|+.++.+
T Consensus 81 ~~~~~~~~-~~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~~~~--~~~~---~~~~~~~~~~~~~i~~~l~~ 154 (171)
T cd02969 81 KAKAKEHG-YPFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRGRIDD--SRPG---NDPPVTGRDLRAALDALLAG 154 (171)
T ss_pred HHHHHHCC-CCceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEeecccC--Cccc---ccccccHHHHHHHHHHHHcC
Confidence 99999887 458888888889999999999999999999999998753210 0110 01233457788888888876
Q ss_pred Cch
Q 011791 396 WPE 398 (477)
Q Consensus 396 ~~~ 398 (477)
.+.
T Consensus 155 ~~~ 157 (171)
T cd02969 155 KPV 157 (171)
T ss_pred CCC
Confidence 544
|
Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. |
| >PLN02399 phospholipid hydroperoxide glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.1e-18 Score=158.94 Aligned_cols=118 Identities=18% Similarity=0.269 Sum_probs=94.9
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC-------CChhH
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQTS 314 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d-------~~~~~ 314 (477)
+...|+|.+ +.+|+.+++++++||++||+|||+||++|+.++|.|++++++|+++ +++||+|++| .+.++
T Consensus 76 g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~--Gv~VIgV~~d~~~~~e~~s~~e 153 (236)
T PLN02399 76 EKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPE 153 (236)
T ss_pred CCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC--CcEEEEEecccccccCCCCHHH
Confidence 445699999 9999999999999999999999999999999999999999999876 7999999975 34567
Q ss_pred HHHHHh-cCCCceeccCc--chhH-HHHHhc-------C------CCCcceEEEECCCCcEEEecc
Q 011791 315 FDEFFK-GMPWLALPFGD--ARKA-SLSRKF-------K------VSGIPMLVAIGPSGRTITKEA 363 (477)
Q Consensus 315 ~~~~~~-~~~~~~~p~~~--d~~~-~l~~~~-------~------v~~~Pt~~lid~~G~iv~~~~ 363 (477)
.++|+. +++ +.+|+.. |.++ .+...| + +...|+++|||++|+|+.+..
T Consensus 154 i~~f~~~~~g-~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~ 218 (236)
T PLN02399 154 IKQFACTRFK-AEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYP 218 (236)
T ss_pred HHHHHHHhcC-CCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEEC
Confidence 889984 554 6677763 2222 222222 1 456799999999999999854
|
|
| >cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.3e-18 Score=142.54 Aligned_cols=111 Identities=20% Similarity=0.338 Sum_probs=91.8
Q ss_pred CCce-ecCCCCeEecCCCC-CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCC
Q 011791 87 RDFV-ISSDGRKISVSDLE-GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPW 164 (477)
Q Consensus 87 p~fl-~~~~g~~v~ls~l~-gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~ 164 (477)
|+|. .+.+|+.+++++++ ||+++|+||++||++|+.++|.|+++++++.+. +.++.++ |.+.+...+++++++.
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~---~~vi~v~-~~~~~~~~~~~~~~~~ 76 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADW---LDVVLAS-DGEKAEHQRFLKKHGL 76 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCC---cEEEEEe-CCCHHHHHHHHHHhCC
Confidence 4664 47899999999997 999999999999999999999999999887543 7888776 6677888888887664
Q ss_pred ccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 165 LALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
..+|... ...+.+.|++..+|++++||++|+++++++
T Consensus 77 ~~~p~~~--~~~~~~~~~~~~~P~~~vid~~G~v~~~~~ 113 (114)
T cd02967 77 EAFPYVL--SAELGMAYQVSKLPYAVLLDEAGVIAAKGL 113 (114)
T ss_pred CCCcEEe--cHHHHhhcCCCCcCeEEEECCCCeEEeccc
Confidence 4444433 245788999999999999999999998764
|
mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit. |
| >PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-18 Score=145.38 Aligned_cols=115 Identities=32% Similarity=0.650 Sum_probs=105.1
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCC-CChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHh
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAH-WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK 320 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~ 320 (477)
+...|+|.+ +.+|+.+++++++||+++|.||++ ||++|+..++.|++++++|+++ ++++++|+.| +.++.+++.+
T Consensus 2 G~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~--~~~vi~is~d-~~~~~~~~~~ 78 (124)
T PF00578_consen 2 GDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK--GVQVIGISTD-DPEEIKQFLE 78 (124)
T ss_dssp TSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT--TEEEEEEESS-SHHHHHHHHH
T ss_pred cCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccc--eEEeeecccc-cccchhhhhh
Confidence 445699999 999999999999999999999999 9999999999999999999976 7999999997 5568888888
Q ss_pred cCCCceeccCcchhHHHHHhcCCC------CcceEEEECCCCcEEEe
Q 011791 321 GMPWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 321 ~~~~~~~p~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~iv~~ 361 (477)
.++ ..+|+..|....+.+.|++. .+|+++|||++|+|+++
T Consensus 79 ~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 79 EYG-LPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHT-CSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred hhc-cccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 777 88899999899999999998 99999999999999874
|
Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G .... |
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.2e-17 Score=169.19 Aligned_cols=171 Identities=19% Similarity=0.254 Sum_probs=107.9
Q ss_pred HHHHcCcccCCeEEEECCCCCccccchhhHHhhcCCCCCC-CChhhHHHHHHHHHHHhhhhhhhhhhccCCCccee-ccC
Q 011791 177 LARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFP-FTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVV-GKN 254 (477)
Q Consensus 177 l~~~~~v~~~P~~~lid~~G~i~~~~~~~~i~~~g~~a~P-~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~p~f~l-~~~ 254 (477)
+.+.||+..+|++++.+.+|+.+..... .+ .+.+.+..+.+..........+.+.......+..+ .+.
T Consensus 294 ~~~~~gi~~~P~~~i~~~~~~y~~~~~~----------~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~ 363 (477)
T PTZ00102 294 AKEHLLIEEFPGLAYQSPAGRYLLPPAK----------ESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVV 363 (477)
T ss_pred HHHhcCcccCceEEEEcCCcccCCCccc----------cccCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEec
Confidence 6778999999999888877754432110 01 14555555554433332223332222222222223 566
Q ss_pred CCceecc-cCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcch
Q 011791 255 GGKVPVS-DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDAR 333 (477)
Q Consensus 255 g~~~~l~-~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~ 333 (477)
|.++... .-.||+|+|+|||+||++|+.+.|.++++++.+++. ..+.+..++.+...
T Consensus 364 ~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~v~~~~id~~~~~--------------------- 421 (477)
T PTZ00102 364 GNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDN-DSIIVAKMNGTANE--------------------- 421 (477)
T ss_pred ccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccC-CcEEEEEEECCCCc---------------------
Confidence 6666543 234899999999999999999999999999988753 24666666555332
Q ss_pred hHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcC
Q 011791 334 KASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKG 395 (477)
Q Consensus 334 ~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 395 (477)
..++.|+++++||++++++++++..+ +.| ....+.|.+.+++.+..
T Consensus 422 --~~~~~~~v~~~Pt~~~~~~~~~~~~~-------~~G-------~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 422 --TPLEEFSWSAFPTILFVKAGERTPIP-------YEG-------ERTVEGFKEFVNKHATN 467 (477)
T ss_pred --cchhcCCCcccCeEEEEECCCcceeE-------ecC-------cCCHHHHHHHHHHcCCC
Confidence 35778999999999999877665332 222 12236677777776654
|
|
| >PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-18 Score=151.68 Aligned_cols=118 Identities=29% Similarity=0.448 Sum_probs=99.2
Q ss_pred ccCcCCCcee---cCCCCeEecCCCCCCEEEEEEecC-CCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHH
Q 011791 82 LTSHSRDFVI---SSDGRKISVSDLEGKTIGLYFSMS-SYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKR 157 (477)
Q Consensus 82 ~g~~~p~fl~---~~~g~~v~ls~l~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~ 157 (477)
.|+.+|+|.+ +.+|+++++++++||+++|+||++ |||+|+.++|.|.+++++|+++| +.+|+|+.+.+.. ..+
T Consensus 2 ~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~--v~~v~v~~~~~~~-~~~ 78 (146)
T PF08534_consen 2 VGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKG--VDVVGVSSDDDPP-VRE 78 (146)
T ss_dssp TTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--CEEEEEEESSSHH-HHH
T ss_pred CCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCc--eEEEEecccCCHH-HHH
Confidence 4788999954 599999999999999999999999 99999999999999999999988 9999999998876 666
Q ss_pred hhcCCCCccccCCchhHHHHHHHcCcc---------cCCeEEEECCCCCccccch
Q 011791 158 DLGSMPWLALPFKDKSREKLARYFELS---------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~v~---------~~P~~~lid~~G~i~~~~~ 203 (477)
++++.. ..+++..+....+.+.|++. ++|+++|||++|+|++...
T Consensus 79 ~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~ 132 (146)
T PF08534_consen 79 FLKKYG-INFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHV 132 (146)
T ss_dssp HHHHTT-TTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEE
T ss_pred HHHhhC-CCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEe
Confidence 666533 33333444556789999988 9999999999999999875
|
Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A .... |
| >PTZ00056 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.1e-18 Score=154.51 Aligned_cols=118 Identities=15% Similarity=0.191 Sum_probs=94.2
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC-------CChhH
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQTS 314 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d-------~~~~~ 314 (477)
....|+|.+ +.+|+.+++++++||+|||+|||+||++|+.++|.|++++++|+++ +++||+|+++ .+.++
T Consensus 16 ~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~--g~~vvgv~~~~~~~~e~d~~e~ 93 (199)
T PTZ00056 16 RKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL--GLEILAFPTSQFLNQEFPNTKD 93 (199)
T ss_pred CCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC--ceEEEEecchhccCCCCCCHHH
Confidence 345699999 9999999999999999999999999999999999999999999876 7999999974 35678
Q ss_pred HHHHHhcCCCceeccCcch------hHH--------HHHhcCCC----Cc---ceEEEECCCCcEEEecc
Q 011791 315 FDEFFKGMPWLALPFGDAR------KAS--------LSRKFKVS----GI---PMLVAIGPSGRTITKEA 363 (477)
Q Consensus 315 ~~~~~~~~~~~~~p~~~d~------~~~--------l~~~~~v~----~~---Pt~~lid~~G~iv~~~~ 363 (477)
+++|+++++ +.+|+..+. ... +...|++. ++ |+++|||++|+|+.+..
T Consensus 94 ~~~f~~~~~-~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~ 162 (199)
T PTZ00056 94 IRKFNDKNK-IKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFS 162 (199)
T ss_pred HHHHHHHcC-CCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeC
Confidence 999999887 567765431 111 22234432 23 37999999999998753
|
|
| >PLN02412 probable glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.6e-18 Score=151.56 Aligned_cols=116 Identities=18% Similarity=0.278 Sum_probs=93.1
Q ss_pred CCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC-------ChhHHH
Q 011791 245 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSFD 316 (477)
Q Consensus 245 ~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~~ 316 (477)
..|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|++++++|+++ +++|++|++|. +.++..
T Consensus 8 ~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~--g~~vvgv~~~~~~~~~~~~~~~~~ 85 (167)
T PLN02412 8 SIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ--GFEILAFPCNQFLGQEPGSNEEIQ 85 (167)
T ss_pred CCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC--CcEEEEecccccccCCCCCHHHHH
Confidence 4589999 9999999999999999999999999999999999999999999976 79999999863 344555
Q ss_pred HHH-hcCCCceeccCcc--hh-HHHHHhcC-------------CCCcceEEEECCCCcEEEecc
Q 011791 317 EFF-KGMPWLALPFGDA--RK-ASLSRKFK-------------VSGIPMLVAIGPSGRTITKEA 363 (477)
Q Consensus 317 ~~~-~~~~~~~~p~~~d--~~-~~l~~~~~-------------v~~~Pt~~lid~~G~iv~~~~ 363 (477)
+++ ++++ +.||+..+ .+ ....+.|+ |.+.|+++|||++|+|+.+..
T Consensus 86 ~~~~~~~~-~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~ 148 (167)
T PLN02412 86 QTVCTRFK-AEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYA 148 (167)
T ss_pred HHHHHccC-CCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEEC
Confidence 554 5555 67887642 22 13333332 677899999999999999853
|
|
| >TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=150.77 Aligned_cols=115 Identities=22% Similarity=0.319 Sum_probs=95.5
Q ss_pred hhccCCCccee-ccCCC--ceecccC-CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHH
Q 011791 241 VLVSGDLDFVV-GKNGG--KVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFD 316 (477)
Q Consensus 241 ~~~~~~p~f~l-~~~g~--~~~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~ 316 (477)
..+...|+|.+ +.+|+ .++++++ +||+++|+||++||++|+.+.|.+++++++ ++++++|+.+.+.++.+
T Consensus 35 ~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~------~~~vi~V~~~~~~~~~~ 108 (173)
T TIGR00385 35 LIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAKD------GLPIVGVDYKDQSQNAL 108 (173)
T ss_pred hcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc------CCEEEEEECCCChHHHH
Confidence 34556799998 88886 4555565 699999999999999999999999877542 48899999987777888
Q ss_pred HHHhcCCCceec-cCcchhHHHHHhcCCCCcceEEEECCCCcEEEec
Q 011791 317 EFFKGMPWLALP-FGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 317 ~~~~~~~~~~~p-~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
+|+++++ ..+| +..|....+.+.|++.++|++++||++|+++++.
T Consensus 109 ~~~~~~~-~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~ 154 (173)
T TIGR00385 109 KFLKELG-NPYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRH 154 (173)
T ss_pred HHHHHcC-CCCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEE
Confidence 9999887 4455 4557778899999999999999999999999884
|
Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins. |
| >cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.3e-18 Score=144.72 Aligned_cols=107 Identities=19% Similarity=0.286 Sum_probs=91.0
Q ss_pred CCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC-----CCHHHHHHhhcCCCCcccc
Q 011791 94 DGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-----DEEESFKRDLGSMPWLALP 168 (477)
Q Consensus 94 ~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D-----~~~~~~~~~~~~~~~~~~~ 168 (477)
.|+++++++++||+++|+||++||++|+.++|.|++++++|++++ ++||+|+.+ .+.+..++++++.. +.+|
T Consensus 12 ~~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~--~~vi~i~~~~~~~~~~~~~~~~~~~~~~-~~~p 88 (126)
T cd03012 12 TDKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDG--LVVIGVHSPEFAFERDLANVKSAVLRYG-ITYP 88 (126)
T ss_pred CCCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCC--eEEEEeccCccccccCHHHHHHHHHHcC-CCCC
Confidence 367899999999999999999999999999999999999999877 999999863 45677777777654 2345
Q ss_pred CCchhHHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 169 FKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 169 ~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
...+....+.+.|++.++|+++|||++|++++...
T Consensus 89 ~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~~ 123 (126)
T cd03012 89 VANDNDYATWRAYGNQYWPALYLIDPTGNVRHVHF 123 (126)
T ss_pred EEECCchHHHHHhCCCcCCeEEEECCCCcEEEEEe
Confidence 55555677899999999999999999999998764
|
Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3. |
| >PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-17 Score=145.70 Aligned_cols=116 Identities=21% Similarity=0.329 Sum_probs=102.4
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCC-CChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHh
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAH-WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK 320 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~ 320 (477)
+...|+|.+ +.+|+.+++++++||++||+||++ ||+.|..+.+.|++++++++++ ++++|+|+.| +.+++++|++
T Consensus 7 g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~--~v~vi~Is~d-~~~~~~~~~~ 83 (154)
T PRK09437 7 GDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA--GVVVLGISTD-KPEKLSRFAE 83 (154)
T ss_pred CCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEcCC-CHHHHHHHHH
Confidence 445689999 999999999999999999999986 6888999999999999999876 6999999998 5688899999
Q ss_pred cCCCceeccCcchhHHHHHhcCCCCc------------ceEEEECCCCcEEEec
Q 011791 321 GMPWLALPFGDARKASLSRKFKVSGI------------PMLVAIGPSGRTITKE 362 (477)
Q Consensus 321 ~~~~~~~p~~~d~~~~l~~~~~v~~~------------Pt~~lid~~G~iv~~~ 362 (477)
+++ ..+|++.|....+.+.|++... |+++|||++|+|+...
T Consensus 84 ~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 136 (154)
T PRK09437 84 KEL-LNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVF 136 (154)
T ss_pred HhC-CCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEE
Confidence 887 5788888888889999998754 6789999999999884
|
|
| >KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-17 Score=166.15 Aligned_cols=88 Identities=24% Similarity=0.477 Sum_probs=65.1
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+|.|||.||||||+||+++.|.+++|+++|++. -.||...+|.+.++ .....+.
T Consensus 384 ~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~---~~vviAKmDaTaNd-----------------------~~~~~~~ 437 (493)
T KOG0190|consen 384 GKDVLVEFYAPWCGHCKALAPIYEELAEKYKDD---ENVVIAKMDATAND-----------------------VPSLKVD 437 (493)
T ss_pred ccceEEEEcCcccchhhhhhhHHHHHHHHhcCC---CCcEEEEecccccc-----------------------Ccccccc
Confidence 899999999999999999999999999999873 35677788876531 2345678
Q ss_pred CcceEEEECCCC--cEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHH
Q 011791 345 GIPMLVAIGPSG--RTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMA 393 (477)
Q Consensus 345 ~~Pt~~lid~~G--~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 393 (477)
++||++++-..+ +++... | +++++.|...+++..
T Consensus 438 ~fPTI~~~pag~k~~pv~y~--------g-------~R~le~~~~fi~~~a 473 (493)
T KOG0190|consen 438 GFPTILFFPAGHKSNPVIYN--------G-------DRTLEDLKKFIKKSA 473 (493)
T ss_pred ccceEEEecCCCCCCCcccC--------C-------CcchHHHHhhhccCC
Confidence 899999994433 233322 2 455677777776544
|
|
| >TIGR02661 MauD methylamine dehydrogenase accessory protein MauD | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.9e-17 Score=148.00 Aligned_cols=129 Identities=22% Similarity=0.295 Sum_probs=100.8
Q ss_pred hccCCCccee-ccCCCceecc--cCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHH
Q 011791 242 LVSGDLDFVV-GKNGGKVPVS--DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 318 (477)
Q Consensus 242 ~~~~~p~f~l-~~~g~~~~l~--~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~ 318 (477)
.+...|+|.+ +.+|+.++++ .++||+++|+||++||++|+.++|.+++++++. ++.+++|+.| +.++.++|
T Consensus 48 vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-----~~~vv~Is~~-~~~~~~~~ 121 (189)
T TIGR02661 48 VGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-----ETDVVMISDG-TPAEHRRF 121 (189)
T ss_pred CCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc-----CCcEEEEeCC-CHHHHHHH
Confidence 3455699999 9999999994 578999999999999999999999999987653 3668889855 67788999
Q ss_pred HhcCCCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHH
Q 011791 319 FKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYN 390 (477)
Q Consensus 319 ~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~ 390 (477)
+++++. .++... ...++.+.|++.++|++++||++|+|+.++. .-+.++++++++.++
T Consensus 122 ~~~~~~-~~~~~~-~~~~i~~~y~v~~~P~~~lID~~G~I~~~g~------------~~~~~~le~ll~~l~ 179 (189)
T TIGR02661 122 LKDHEL-GGERYV-VSAEIGMAFQVGKIPYGVLLDQDGKIRAKGL------------TNTREHLESLLEADR 179 (189)
T ss_pred HHhcCC-Ccceee-chhHHHHhccCCccceEEEECCCCeEEEccC------------CCCHHHHHHHHHHHH
Confidence 998874 232221 3467889999999999999999999998632 123455666665553
|
This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded. |
| >cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-17 Score=142.92 Aligned_cols=113 Identities=27% Similarity=0.419 Sum_probs=102.8
Q ss_pred CCccee-ccCCCceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCC
Q 011791 246 DLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 323 (477)
Q Consensus 246 ~p~f~l-~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~ 323 (477)
.|+|.+ +.+|+.+++++++||+++|+|| ++||+.|..+++.|++++++++++ +++||+|++| +.+.+++|.++++
T Consensus 3 ~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~~~vv~is~d-~~~~~~~~~~~~~ 79 (140)
T cd03017 3 APDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL--GAVVIGVSPD-SVESHAKFAEKYG 79 (140)
T ss_pred CCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEcCC-CHHHHHHHHHHhC
Confidence 488888 8999999999999999999999 589999999999999999999865 6999999998 4578899999887
Q ss_pred CceeccCcchhHHHHHhcCCCCc---------ceEEEECCCCcEEEec
Q 011791 324 WLALPFGDARKASLSRKFKVSGI---------PMLVAIGPSGRTITKE 362 (477)
Q Consensus 324 ~~~~p~~~d~~~~l~~~~~v~~~---------Pt~~lid~~G~iv~~~ 362 (477)
..+|++.|....+.+.||+... |++++||++|+|+...
T Consensus 80 -~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~ 126 (140)
T cd03017 80 -LPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVW 126 (140)
T ss_pred -CCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEE
Confidence 5788888888899999999988 9999999999999984
|
The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w |
| >PRK00522 tpx lipid hydroperoxide peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.8e-17 Score=145.63 Aligned_cols=116 Identities=16% Similarity=0.196 Sum_probs=101.5
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCCC-ChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHh
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHW-CPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK 320 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~ 320 (477)
+...|+|.+ +.+|+.+++++++||+++|+||++| |++|..++|.|+++++++. +++|++|+.|. ....++|.+
T Consensus 21 G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~----~~~vv~vs~D~-~~~~~~f~~ 95 (167)
T PRK00522 21 GDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD----NTVVLCISADL-PFAQKRFCG 95 (167)
T ss_pred CCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC----CcEEEEEeCCC-HHHHHHHHH
Confidence 455699998 8999999999999999999999999 9999999999999998883 58999999984 466788999
Q ss_pred cCCCceeccCcc-hhHHHHHhcCCCCcc---------eEEEECCCCcEEEecc
Q 011791 321 GMPWLALPFGDA-RKASLSRKFKVSGIP---------MLVAIGPSGRTITKEA 363 (477)
Q Consensus 321 ~~~~~~~p~~~d-~~~~l~~~~~v~~~P---------t~~lid~~G~iv~~~~ 363 (477)
+++...++++.| ....+++.||+...| ++++||++|+|+..+.
T Consensus 96 ~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~ 148 (167)
T PRK00522 96 AEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSEL 148 (167)
T ss_pred hCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEE
Confidence 887545788888 556899999998877 9999999999999853
|
|
| >PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-17 Score=140.94 Aligned_cols=116 Identities=34% Similarity=0.563 Sum_probs=97.5
Q ss_pred ccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecC-CCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhh
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMS-SYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 159 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~ 159 (477)
+|.++|+|.+ +.+|+.+++++++||+++|+||++ ||++|+..++.|++++++|+++| +.+++|+.|.. +..+++.
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~--~~vi~is~d~~-~~~~~~~ 77 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKG--VQVIGISTDDP-EEIKQFL 77 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSSH-HHHHHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccce--EEeeecccccc-cchhhhh
Confidence 5889999965 899999999999999999999999 99999999999999999999887 99999999754 3556666
Q ss_pred cCCCCccccCCchhHHHHHHHcCcc------cCCeEEEECCCCCcccc
Q 011791 160 GSMPWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 201 (477)
+... +.++...+....+.+.|++. .+|+++|||++|+|+++
T Consensus 78 ~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 78 EEYG-LPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHT-CSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred hhhc-cccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 5433 33333344556789999998 99999999999999863
|
Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G .... |
| >cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-17 Score=140.75 Aligned_cols=114 Identities=18% Similarity=0.146 Sum_probs=92.8
Q ss_pred cCCCcee-cCCC--CeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcC
Q 011791 85 HSRDFVI-SSDG--RKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGS 161 (477)
Q Consensus 85 ~~p~fl~-~~~g--~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~ 161 (477)
++|+|.+ +.+| +.+++++++||+++|+||++||++|+.++|.|.++++++ + ++||+|+.+++.+.+++++++
T Consensus 2 ~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~--~~vv~v~~~~~~~~~~~~~~~ 76 (127)
T cd03010 2 PAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---R--VPIYGINYKDNPENALAWLAR 76 (127)
T ss_pred CCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---C--cEEEEEECCCCHHHHHHHHHh
Confidence 5688854 6777 889999999999999999999999999999999988764 3 899999999888888888876
Q ss_pred CCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 162 MPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
......+...+....+++.|++.++|+++++|++|+++.+..
T Consensus 77 ~~~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~~~ 118 (127)
T cd03010 77 HGNPYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYKHV 118 (127)
T ss_pred cCCCCceEEECCcchHHHhcCCCCCCeEEEECCCceEEEEEe
Confidence 532211222234456889999999999999999999887653
|
Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c. |
| >PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=163.48 Aligned_cols=118 Identities=14% Similarity=0.160 Sum_probs=101.7
Q ss_pred ccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC-----CCHHHH
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-----DEEESF 155 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D-----~~~~~~ 155 (477)
.+.++|+|.+ |.+|+.+.++ +||+|+|+|||+||+||+.++|.|.+++++++..+ ++||+|+++ .+.+.+
T Consensus 34 ~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~--v~VI~Vs~~~~~~e~~~~~~ 109 (521)
T PRK14018 34 VPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSS--ANLITVASPGFLHEKKDGDF 109 (521)
T ss_pred ccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEecccccccccHHHH
Confidence 3567999955 9999999987 89999999999999999999999999999998666 999999873 345667
Q ss_pred HHhhcCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 156 KRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
+++++.+.+..++...+....+++.|+|.++|+++|||++|+++....
T Consensus 110 ~~~~~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~ 157 (521)
T PRK14018 110 QKWYAGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVK 157 (521)
T ss_pred HHHHHhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEe
Confidence 778777777677777777778999999999999999999999997764
|
|
| >TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626 | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.9e-17 Score=144.42 Aligned_cols=140 Identities=13% Similarity=0.070 Sum_probs=102.9
Q ss_pred hhhhhhhccCCCccee---ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEE------EEE
Q 011791 236 QTLESVLVSGDLDFVV---GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEV------VFI 306 (477)
Q Consensus 236 ~~l~~~~~~~~p~f~l---~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~i------v~i 306 (477)
+.++++.+...-+..+ +.+.+.++.++++||+.||+|||+||++|+.+.|.|.++.+ + ++.+ +.|
T Consensus 27 ~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~----~--~~~~~~y~~t~~I 100 (184)
T TIGR01626 27 QSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKA----A--KFPPVKYQTTTII 100 (184)
T ss_pred CcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHHHH----c--CCCcccccceEEE
Confidence 3343433333333444 34456778889999999999999999999999999998833 2 4667 899
Q ss_pred eCCCChhHHHHHH----hcCCCcee---ccCcchhHHHHHhcCCCCcceE-EEECCCCcEEEeccchhhhhcCCCCCCCC
Q 011791 307 SSDRDQTSFDEFF----KGMPWLAL---PFGDARKASLSRKFKVSGIPML-VAIGPSGRTITKEARDMIAVHGAEAYPFT 378 (477)
Q Consensus 307 ~~d~~~~~~~~~~----~~~~~~~~---p~~~d~~~~l~~~~~v~~~Pt~-~lid~~G~iv~~~~~~~~~~~g~~~~~~~ 378 (477)
+.|.+......|+ ++.. ..+ ++..|..+.+...|++.++|++ |+||++|+|+.+.. ++.+
T Consensus 101 N~dd~~~~~~~fVk~fie~~~-~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~-----------G~l~ 168 (184)
T TIGR01626 101 NADDAIVGTGMFVKSSAKKGK-KENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKE-----------GALS 168 (184)
T ss_pred ECccchhhHHHHHHHHHHHhc-ccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEe-----------CCCC
Confidence 9987655544444 4333 233 4777778888999999999988 89999999999854 3567
Q ss_pred HHHHHHHHHHHHHHH
Q 011791 379 EERMKEIDGQYNEMA 393 (477)
Q Consensus 379 ~~~~~~l~~~~~~~~ 393 (477)
++.++++...+++++
T Consensus 169 ~ee~e~~~~li~~ll 183 (184)
T TIGR01626 169 DSDIQTVISLVNGLL 183 (184)
T ss_pred HHHHHHHHHHHHHHh
Confidence 777777777777765
|
This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ. |
| >TIGR02540 gpx7 putative glutathione peroxidase Gpx7 | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.3e-17 Score=142.14 Aligned_cols=114 Identities=16% Similarity=0.232 Sum_probs=90.8
Q ss_pred Cccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC-------CChhHHHHH
Q 011791 247 LDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQTSFDEF 318 (477)
Q Consensus 247 p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d-------~~~~~~~~~ 318 (477)
-+|.+ +.+|+++++++++||++||+|||+||++|+..+|.|++++++|+++ ++.|++|+++ .+.+..++|
T Consensus 3 ~~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~--~~~v~~i~~~~~~~~~~d~~~~~~~f 80 (153)
T TIGR02540 3 YSFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPS--HFNVLAFPCNQFGESEPDSSKEIESF 80 (153)
T ss_pred ccceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC--CeEEEEEeccccccCCCCCHHHHHHH
Confidence 36777 8999999999999999999999999999999999999999999876 6999999852 345678999
Q ss_pred Hhc-CCCceeccCcc-----hhHHHHHhcC---CCCcce----EEEECCCCcEEEecc
Q 011791 319 FKG-MPWLALPFGDA-----RKASLSRKFK---VSGIPM----LVAIGPSGRTITKEA 363 (477)
Q Consensus 319 ~~~-~~~~~~p~~~d-----~~~~l~~~~~---v~~~Pt----~~lid~~G~iv~~~~ 363 (477)
+++ ++ +.+|+..+ ........|. ..++|+ ++|||++|+++.+..
T Consensus 81 ~~~~~~-~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~ 137 (153)
T TIGR02540 81 ARRNYG-VTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWR 137 (153)
T ss_pred HHHhcC-CCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEEC
Confidence 975 55 56777644 1112122232 246898 999999999999853
|
This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7. |
| >cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=142.97 Aligned_cols=136 Identities=19% Similarity=0.244 Sum_probs=106.7
Q ss_pred cCCCccee-ccCC----CceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHH
Q 011791 244 SGDLDFVV-GKNG----GKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDE 317 (477)
Q Consensus 244 ~~~p~f~l-~~~g----~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~ 317 (477)
...|+|.+ +.+| +.+++++++||++||+|| ++||++|...++.|++++++|+++ ++.|++|++|.. ...+.
T Consensus 3 ~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~--~v~vv~Is~d~~-~~~~~ 79 (173)
T cd03015 3 KKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL--NAEVLGVSTDSH-FSHLA 79 (173)
T ss_pred CcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEecCCH-HHHHH
Confidence 45689998 7776 789999999999999999 899999999999999999999875 799999999853 33344
Q ss_pred HHhcC------CCceeccCcchhHHHHHhcCCC------CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHH
Q 011791 318 FFKGM------PWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEI 385 (477)
Q Consensus 318 ~~~~~------~~~~~p~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l 385 (477)
+.+.. .-+++|+..|....+++.|++. .+|+++|||++|+|+..+. +..+ . .+..+++
T Consensus 80 ~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~-------~~~~--~-~~~~~~i 149 (173)
T cd03015 80 WRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITV-------NDLP--V-GRSVDET 149 (173)
T ss_pred HHHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEe-------cCCC--C-CCCHHHH
Confidence 54432 2357888889899999999986 6789999999999999853 2221 1 2234666
Q ss_pred HHHHHHH
Q 011791 386 DGQYNEM 392 (477)
Q Consensus 386 ~~~~~~~ 392 (477)
++.|+.+
T Consensus 150 l~~l~~~ 156 (173)
T cd03015 150 LRVLDAL 156 (173)
T ss_pred HHHHHHh
Confidence 6666654
|
The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric |
| >cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx) | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.9e-17 Score=140.98 Aligned_cols=116 Identities=17% Similarity=0.183 Sum_probs=101.4
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCCC-ChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHh
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHW-CPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK 320 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~ 320 (477)
+...|+|.+ +.+|+.+++++++||++||+||++| |++|+.++|.|++++++++ ++.|++|++|. ....++|.+
T Consensus 3 G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~----~~~vi~Is~d~-~~~~~~~~~ 77 (143)
T cd03014 3 GDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD----NTVVLTISADL-PFAQKRWCG 77 (143)
T ss_pred CCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC----CCEEEEEECCC-HHHHHHHHH
Confidence 345699999 9999999999999999999999998 6999999999999999873 58999999985 567788888
Q ss_pred cCCCceeccCcchh-HHHHHhcCCCC------cceEEEECCCCcEEEecc
Q 011791 321 GMPWLALPFGDARK-ASLSRKFKVSG------IPMLVAIGPSGRTITKEA 363 (477)
Q Consensus 321 ~~~~~~~p~~~d~~-~~l~~~~~v~~------~Pt~~lid~~G~iv~~~~ 363 (477)
+++...+++..|.. ..+.+.|++.. .|+++|||++|+|+..+.
T Consensus 78 ~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~ 127 (143)
T cd03014 78 AEGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVEL 127 (143)
T ss_pred hcCCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEE
Confidence 88766788888875 88999999863 799999999999999853
|
Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based |
| >cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-16 Score=140.00 Aligned_cols=117 Identities=23% Similarity=0.316 Sum_probs=101.2
Q ss_pred ccCCCccee-ccCCCceecccCCC-CEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHH
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAG-KTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 319 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~g-k~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~ 319 (477)
+...|+|.+ +.+|+.+++++++| |+++|.|| ++||+.|...+|.|++++++++++ ++++++|+.| +.+..++|.
T Consensus 4 G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~v~vi~vs~d-~~~~~~~~~ 80 (149)
T cd03018 4 GDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAA--GAEVLGISVD-SPFSLRAWA 80 (149)
T ss_pred CCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC--CCEEEEecCC-CHHHHHHHH
Confidence 344588988 89999999999999 99999888 899999999999999999999865 6999999988 456788999
Q ss_pred hcCCCceeccCcchh--HHHHHhcCCC----Ccc--eEEEECCCCcEEEecc
Q 011791 320 KGMPWLALPFGDARK--ASLSRKFKVS----GIP--MLVAIGPSGRTITKEA 363 (477)
Q Consensus 320 ~~~~~~~~p~~~d~~--~~l~~~~~v~----~~P--t~~lid~~G~iv~~~~ 363 (477)
++++ ..+|+..|.. ..+.+.|++. ++| ++++||++|+++..+.
T Consensus 81 ~~~~-~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~ 131 (149)
T cd03018 81 EENG-LTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWV 131 (149)
T ss_pred HhcC-CCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEe
Confidence 8887 6788888866 8899999997 333 8999999999999853
|
AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. |
| >PRK15412 thiol:disulfide interchange protein DsbE; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.2e-17 Score=148.54 Aligned_cols=117 Identities=15% Similarity=0.166 Sum_probs=92.7
Q ss_pred hhccCcCCCcee-cCC--CCeEecCCC-CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHH
Q 011791 80 SVLTSHSRDFVI-SSD--GRKISVSDL-EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESF 155 (477)
Q Consensus 80 ~~~g~~~p~fl~-~~~--g~~v~ls~l-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~ 155 (477)
...|.++|+|.+ +.+ |+.++++++ +||+++|+|||+||++|+.++|.|.++++ +| ++||+|+.|++.+..
T Consensus 39 ~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~--~~vi~v~~~~~~~~~ 112 (185)
T PRK15412 39 ALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QG--IRVVGMNYKDDRQKA 112 (185)
T ss_pred hhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cC--CEEEEEECCCCHHHH
Confidence 346888999954 665 577777665 79999999999999999999999988754 35 899999998888888
Q ss_pred HHhhcCCC--CccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccchh
Q 011791 156 KRDLGSMP--WLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVA 204 (477)
Q Consensus 156 ~~~~~~~~--~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~ 204 (477)
.++++++. |..+.. +....+.+.|++.++|+++++|++|+++++...
T Consensus 113 ~~~~~~~~~~~~~~~~--D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~~G 161 (185)
T PRK15412 113 ISWLKELGNPYALSLF--DGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAG 161 (185)
T ss_pred HHHHHHcCCCCceEEE--cCCccHHHhcCCCcCCeEEEECCCceEEEEEec
Confidence 88887653 332222 233557789999999999999999999988753
|
|
| >PTZ00256 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-16 Score=145.14 Aligned_cols=116 Identities=18% Similarity=0.335 Sum_probs=91.2
Q ss_pred CCCccee-ccCCCceecccCCCCEE-EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC-------ChhHH
Q 011791 245 GDLDFVV-GKNGGKVPVSDLAGKTI-LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSF 315 (477)
Q Consensus 245 ~~p~f~l-~~~g~~~~l~~~~gk~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~ 315 (477)
..|+|.+ +.+|+.+++++++||++ |+.|||+||++|+.++|.|++++++|+++ ++.|++|++|. +.++.
T Consensus 19 ~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~--gv~vv~vs~~~~~~~~~~~~~~~ 96 (183)
T PTZ00256 19 SFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ--GLEILAFPCNQFMEQEPWDEPEI 96 (183)
T ss_pred cccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC--CcEEEEEecccccccCCCCHHHH
Confidence 3489998 99999999999999965 45669999999999999999999999876 69999999752 34678
Q ss_pred HHHHh-cCCCceeccCcc--hhH----HHH------------HhcCCCCcce---EEEECCCCcEEEecc
Q 011791 316 DEFFK-GMPWLALPFGDA--RKA----SLS------------RKFKVSGIPM---LVAIGPSGRTITKEA 363 (477)
Q Consensus 316 ~~~~~-~~~~~~~p~~~d--~~~----~l~------------~~~~v~~~Pt---~~lid~~G~iv~~~~ 363 (477)
++|+. +++ ++||+..+ .+. .+. ..+++.++|+ ++|||++|+|+.+..
T Consensus 97 ~~f~~~~~~-~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~ 165 (183)
T PTZ00256 97 KEYVQKKFN-VDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFS 165 (183)
T ss_pred HHHHHHhcC-CCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEEC
Confidence 88876 555 66787643 111 222 1236789995 699999999999853
|
|
| >PTZ00056 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=146.97 Aligned_cols=120 Identities=10% Similarity=0.162 Sum_probs=90.2
Q ss_pred ccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC-------CCHH
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------DEEE 153 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D-------~~~~ 153 (477)
.+..+|+|.+ +.+|+.+++++++||+|+|+|||+||++|+.++|.|++++++|+++| ++||+|++| ++.+
T Consensus 15 ~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g--~~vvgv~~~~~~~~e~d~~e 92 (199)
T PTZ00056 15 LRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLG--LEILAFPTSQFLNQEFPNTK 92 (199)
T ss_pred cCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCc--eEEEEecchhccCCCCCCHH
Confidence 4667899955 89999999999999999999999999999999999999999999888 999999975 3566
Q ss_pred HHHHhhcCC--CCccccC---CchhHHH--------HHHHcCcc----cC---CeEEEECCCCCccccch
Q 011791 154 SFKRDLGSM--PWLALPF---KDKSREK--------LARYFELS----TL---PTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 154 ~~~~~~~~~--~~~~~~~---~~~~~~~--------l~~~~~v~----~~---P~~~lid~~G~i~~~~~ 203 (477)
..++++++. +|..+.. ....... +...|++. .+ |+.+|||++|+++.+..
T Consensus 93 ~~~~f~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~ 162 (199)
T PTZ00056 93 DIRKFNDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFS 162 (199)
T ss_pred HHHHHHHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeC
Confidence 778887754 3333211 1111111 12233332 23 37999999999997664
|
|
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=142.67 Aligned_cols=171 Identities=18% Similarity=0.220 Sum_probs=107.4
Q ss_pred EEEEEEec---CCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 107 TIGLYFSM---SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 107 ~vll~F~a---~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
..++.|.+ +||++|+...|.+.++.+.+.+ +++..+.+|.+.. ..+++.|+|
T Consensus 21 ~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~----~~i~~v~vd~~~~---------------------~~l~~~~~V 75 (215)
T TIGR02187 21 VEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK----LKLEIYDFDTPED---------------------KEEAEKYGV 75 (215)
T ss_pred eEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC----ceEEEEecCCccc---------------------HHHHHHcCC
Confidence 34444666 9999999999999999988832 5666777764321 458899999
Q ss_pred ccCCeEEEECCCCCccc-cchhhHHhhcCCCCCCCChhhHHHHHHHH-HHHhhhhhhhhhhccCCCcceeccCCCc-eec
Q 011791 184 STLPTLVIIGPDGKTLH-SNVAEAIEEHGVGAFPFTPEKFAELAEIQ-RAKEESQTLESVLVSGDLDFVVGKNGGK-VPV 260 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~-~~~~~~i~~~g~~a~P~~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~p~f~l~~~g~~-~~l 260 (477)
.++||+++++ +|+.+. +... +| +...+..+.+.. ......+ .+ +... -.+
T Consensus 76 ~~~Pt~~~f~-~g~~~~~~~~G----------~~-~~~~l~~~i~~~~~~~~~~~-------------~L--~~~~~~~l 128 (215)
T TIGR02187 76 ERVPTTIILE-EGKDGGIRYTG----------IP-AGYEFAALIEDIVRVSQGEP-------------GL--SEKTVELL 128 (215)
T ss_pred CccCEEEEEe-CCeeeEEEEee----------cC-CHHHHHHHHHHHHHhcCCCC-------------CC--CHHHHHHH
Confidence 9999999987 565542 2211 01 222222222111 0000000 01 1110 111
Q ss_pred ccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHh
Q 011791 261 SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 340 (477)
Q Consensus 261 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 340 (477)
..+.+..+++.||++||++|+.+.+.++++..+. +++.+..++.+... ++++.
T Consensus 129 ~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~----~~i~~~~vD~~~~~-----------------------~~~~~ 181 (215)
T TIGR02187 129 QSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN----DKILGEMIEANENP-----------------------DLAEK 181 (215)
T ss_pred HhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc----CceEEEEEeCCCCH-----------------------HHHHH
Confidence 2233445666699999999999998888776653 24666666665443 68899
Q ss_pred cCCCCcceEEEECCCCc
Q 011791 341 FKVSGIPMLVAIGPSGR 357 (477)
Q Consensus 341 ~~v~~~Pt~~lid~~G~ 357 (477)
|+|.++||+++. .+|+
T Consensus 182 ~~V~~vPtl~i~-~~~~ 197 (215)
T TIGR02187 182 YGVMSVPKIVIN-KGVE 197 (215)
T ss_pred hCCccCCEEEEe-cCCE
Confidence 999999999988 5665
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-16 Score=132.65 Aligned_cols=111 Identities=34% Similarity=0.632 Sum_probs=100.6
Q ss_pred ccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCC-hhHHHHHHhcCCCc
Q 011791 248 DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD-QTSFDEFFKGMPWL 325 (477)
Q Consensus 248 ~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~-~~~~~~~~~~~~~~ 325 (477)
+|.+ +.+|+.+++++++||+++|+||++||++|+..++.+.++.+++++. ++.++.|++|.. .+++++++++++ .
T Consensus 1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~~~~v~~d~~~~~~~~~~~~~~~-~ 77 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDD--GVEVVGVNVDDDDPAAVKAFLKKYG-I 77 (116)
T ss_pred CccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCC--CeEEEEEECCCCCHHHHHHHHHHcC-C
Confidence 3556 7899999999999999999999999999999999999999998733 699999999986 899999999988 6
Q ss_pred eeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEe
Q 011791 326 ALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 326 ~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
.+++..+....+.+.|++.++|+++++|++|+++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 78 TFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred CcceEEcCcchHHHhcCcCccceEEEECCCCcEEEE
Confidence 778877877889999999999999999999999876
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. |
| >TIGR03137 AhpC peroxiredoxin | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-16 Score=145.43 Aligned_cols=118 Identities=24% Similarity=0.322 Sum_probs=98.0
Q ss_pred hccCCCccee-c-cCCC--ceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHH
Q 011791 242 LVSGDLDFVV-G-KNGG--KVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFD 316 (477)
Q Consensus 242 ~~~~~p~f~l-~-~~g~--~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~ 316 (477)
++...|+|.+ + .+|+ .+++++++||++||+|| ++||++|..+++.|++++++|+++ +++|++|++|.. ...+
T Consensus 4 ~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~--gv~vi~VS~D~~-~~~~ 80 (187)
T TIGR03137 4 INTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL--GVEVYSVSTDTH-FVHK 80 (187)
T ss_pred cCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc--CCcEEEEeCCCH-HHHH
Confidence 4556799998 6 4676 68888999999999999 999999999999999999999876 799999999953 4444
Q ss_pred HHHhcC---CCceeccCcchhHHHHHhcCCC------CcceEEEECCCCcEEEec
Q 011791 317 EFFKGM---PWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 317 ~~~~~~---~~~~~p~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~iv~~~ 362 (477)
+|.+.. .-+.||++.|....+++.|||. ..|++++||++|+|+...
T Consensus 81 ~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~ 135 (187)
T TIGR03137 81 AWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVE 135 (187)
T ss_pred HHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEE
Confidence 444332 2366888888889999999986 469999999999999874
|
This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. |
| >cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate | Back alignment and domain information |
|---|
Probab=99.69 E-value=4e-17 Score=144.00 Aligned_cols=115 Identities=21% Similarity=0.300 Sum_probs=86.8
Q ss_pred CCCce-ecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC-------CHHHHHH
Q 011791 86 SRDFV-ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EEESFKR 157 (477)
Q Consensus 86 ~p~fl-~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~-------~~~~~~~ 157 (477)
.|+|. .+.+|+++++++++||+|+|+|||+||+ |+.++|.|++++++|+++| +.||+|++|. +.+..++
T Consensus 2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~ 78 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRG--LVVLGFPCNQFGGQEPGSNEEIKE 78 (152)
T ss_pred cceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCC--EEEEEeccCccccCCCCCHHHHHH
Confidence 56774 4899999999999999999999999999 9999999999999999887 9999999763 3566777
Q ss_pred hhcC-CCCccccCCch---hHHHHHHHcC--cccCC-----------eEEEECCCCCccccchh
Q 011791 158 DLGS-MPWLALPFKDK---SREKLARYFE--LSTLP-----------TLVIIGPDGKTLHSNVA 204 (477)
Q Consensus 158 ~~~~-~~~~~~~~~~~---~~~~l~~~~~--v~~~P-----------~~~lid~~G~i~~~~~~ 204 (477)
++++ .. +.+|...+ ......+.|+ +..+| +++|||++|+++++...
T Consensus 79 f~~~~~~-~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G 141 (152)
T cd00340 79 FCETNYG-VTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAP 141 (152)
T ss_pred HHHHhcC-CCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECC
Confidence 7764 33 22333211 1111233344 35566 79999999999987653
|
GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes. |
| >cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-16 Score=133.92 Aligned_cols=106 Identities=25% Similarity=0.475 Sum_probs=94.1
Q ss_pred Cccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCC-hhHHHHHHhcCCC
Q 011791 247 LDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD-QTSFDEFFKGMPW 324 (477)
Q Consensus 247 p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~-~~~~~~~~~~~~~ 324 (477)
|+|.+ +.+|+.++++.++||+++|+||++||++|+.+.|.|++++++ +++++|+.|.+ .+++++++++++
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-------~~~i~i~~~~~~~~~~~~~~~~~~- 72 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-------YPVVSVALRSGDDGAVARFMQKKG- 72 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-------CCEEEEEccCCCHHHHHHHHHHcC-
Confidence 67888 899999999999999999999999999999999999998776 44788888754 788999999988
Q ss_pred ceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEe
Q 011791 325 LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 325 ~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
+.+|+..|.+..+.+.|+|.++|++++||++| ++.+
T Consensus 73 ~~~~~~~d~~~~~~~~~~i~~~P~~~vid~~g-i~~~ 108 (123)
T cd03011 73 YGFPVINDPDGVISARWGVSVTPAIVIVDPGG-IVFV 108 (123)
T ss_pred CCccEEECCCcHHHHhCCCCcccEEEEEcCCC-eEEE
Confidence 67888888888899999999999999999998 7766
|
The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. |
| >PLN02399 phospholipid hydroperoxide glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-16 Score=148.22 Aligned_cols=123 Identities=19% Similarity=0.259 Sum_probs=92.3
Q ss_pred hhhccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC-------C
Q 011791 79 RSVLTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------D 150 (477)
Q Consensus 79 ~~~~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D-------~ 150 (477)
....|..+|+|.+ +.+|+.+++++++||+|+|+|||+||++|+.++|.|++++++|+++| ++||+|+.| +
T Consensus 72 ~~~~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~G--v~VIgV~~d~~~~~e~~ 149 (236)
T PLN02399 72 RAATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPG 149 (236)
T ss_pred chhcCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCC--cEEEEEecccccccCCC
Confidence 3457889999965 89999999999999999999999999999999999999999999888 999999975 3
Q ss_pred CHHHHHHhh-cC--CCCccccCCchhHHHHHHH-------cC------cccCCeEEEECCCCCccccch
Q 011791 151 EEESFKRDL-GS--MPWLALPFKDKSREKLARY-------FE------LSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 151 ~~~~~~~~~-~~--~~~~~~~~~~~~~~~l~~~-------~~------v~~~P~~~lid~~G~i~~~~~ 203 (477)
+.++..+++ ++ +++..+...+.....+... ++ +...|+.+|||++|+++.+..
T Consensus 150 s~~ei~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~ 218 (236)
T PLN02399 150 SNPEIKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYP 218 (236)
T ss_pred CHHHHHHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEEC
Confidence 445666765 33 2332221111111112122 22 355799999999999998765
|
|
| >TIGR02661 MauD methylamine dehydrogenase accessory protein MauD | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.7e-16 Score=142.71 Aligned_cols=114 Identities=17% Similarity=0.234 Sum_probs=91.5
Q ss_pred hccCcCCCcee-cCCCCeEecC--CCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHH
Q 011791 81 VLTSHSRDFVI-SSDGRKISVS--DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKR 157 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls--~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~ 157 (477)
-+|..+|+|.+ +.+|+.++++ +++||+++|+||++||++|+.++|.+.++++++ + +.+++|+.| +.++..+
T Consensus 47 ~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~--~~vv~Is~~-~~~~~~~ 120 (189)
T TIGR02661 47 DVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---E--TDVVMISDG-TPAEHRR 120 (189)
T ss_pred CCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---C--CcEEEEeCC-CHHHHHH
Confidence 46889999965 8999999995 579999999999999999999999999988653 3 668888854 6677788
Q ss_pred hhcCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccc
Q 011791 158 DLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 202 (477)
++++...-...+. ....+.+.|++..+|+.+++|++|++++..
T Consensus 121 ~~~~~~~~~~~~~--~~~~i~~~y~v~~~P~~~lID~~G~I~~~g 163 (189)
T TIGR02661 121 FLKDHELGGERYV--VSAEIGMAFQVGKIPYGVLLDQDGKIRAKG 163 (189)
T ss_pred HHHhcCCCcceee--chhHHHHhccCCccceEEEECCCCeEEEcc
Confidence 8886542211111 235688999999999999999999998764
|
This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded. |
| >PRK03147 thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-16 Score=142.36 Aligned_cols=119 Identities=28% Similarity=0.448 Sum_probs=102.9
Q ss_pred hccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhh
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 159 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~ 159 (477)
-.|..+|+|.+ +.+|+.+++++++||+++|+||++||++|+.+++.|.++++++++.+ +.+++|+.|.+.+.+.+++
T Consensus 36 ~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~--~~vi~i~~d~~~~~~~~~~ 113 (173)
T PRK03147 36 QVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKG--VEIIAVNVDETELAVKNFV 113 (173)
T ss_pred CCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCC--eEEEEEEcCCCHHHHHHHH
Confidence 35788999965 89999999999999999999999999999999999999999999876 9999999999988888888
Q ss_pred cCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccc
Q 011791 160 GSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 202 (477)
++++ +.++...+....+.+.|++..+|+++++|++|+++...
T Consensus 114 ~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~ 155 (173)
T PRK03147 114 NRYG-LTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVI 155 (173)
T ss_pred HHhC-CCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEE
Confidence 8654 23333334456788999999999999999999998654
|
|
| >COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.2e-16 Score=132.71 Aligned_cols=117 Identities=23% Similarity=0.342 Sum_probs=106.5
Q ss_pred hccCCCccee-ccCCCceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHH
Q 011791 242 LVSGDLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 319 (477)
Q Consensus 242 ~~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~ 319 (477)
++...|+|.+ +.+|+.++|++++||+|||||| ..++|.|..++-.+.+.+.+|++. +.+|++||.| +....++|.
T Consensus 6 ~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~--~a~V~GIS~D-s~~~~~~F~ 82 (157)
T COG1225 6 VGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL--GAVVLGISPD-SPKSHKKFA 82 (157)
T ss_pred CCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC--CCEEEEEeCC-CHHHHHHHH
Confidence 3566799999 9999999999999999999999 589999999999999999999976 7999999999 567899999
Q ss_pred hcCCCceeccCcchhHHHHHhcCCC------------CcceEEEECCCCcEEEec
Q 011791 320 KGMPWLALPFGDARKASLSRKFKVS------------GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 320 ~~~~~~~~p~~~d~~~~l~~~~~v~------------~~Pt~~lid~~G~iv~~~ 362 (477)
++++ ++||+++|.+..+++.|||. ..+++||||++|+|+...
T Consensus 83 ~k~~-L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~ 136 (157)
T COG1225 83 EKHG-LTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW 136 (157)
T ss_pred HHhC-CCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe
Confidence 9998 77999999999999999983 357899999999999874
|
|
| >cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.8e-16 Score=141.47 Aligned_cols=118 Identities=22% Similarity=0.413 Sum_probs=99.2
Q ss_pred cCcCCCcee-cCCCCeEecCCC-CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC-------CHH
Q 011791 83 TSHSRDFVI-SSDGRKISVSDL-EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EEE 153 (477)
Q Consensus 83 g~~~p~fl~-~~~g~~v~ls~l-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~-------~~~ 153 (477)
|..+|+|.+ +.+|+.++++++ +||+++|+||++||+.|..+++.|.+++++|++++ +++|+|++|. +.+
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~--v~~v~is~d~~~~~~~d~~~ 78 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKG--VAVVAINSNDIEAYPEDSPE 78 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCC--eEEEEEecCccccccccCHH
Confidence 457888854 889999999998 99999999999999999999999999999998766 9999999985 567
Q ss_pred HHHHhhcCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 154 SFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
.+++++++.... +++..+....+.+.|++..+|+++|+|++|++++...
T Consensus 79 ~~~~~~~~~~~~-~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~ 127 (171)
T cd02969 79 NMKAKAKEHGYP-FPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRGR 127 (171)
T ss_pred HHHHHHHHCCCC-ceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEeec
Confidence 888888765421 3333344567889999999999999999999997653
|
Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. |
| >PLN02412 probable glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-16 Score=142.68 Aligned_cols=117 Identities=20% Similarity=0.327 Sum_probs=87.2
Q ss_pred CcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC-------CHHHH
Q 011791 84 SHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EEESF 155 (477)
Q Consensus 84 ~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~-------~~~~~ 155 (477)
..+|+|.+ +.+|+.+++++++||+++|+|||+||++|+.++|.|++++++|+++| ++||+|+.|. +.+..
T Consensus 7 ~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g--~~vvgv~~~~~~~~~~~~~~~~ 84 (167)
T PLN02412 7 KSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQG--FEILAFPCNQFLGQEPGSNEEI 84 (167)
T ss_pred CCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCC--cEEEEecccccccCCCCCHHHH
Confidence 56889965 89999999999999999999999999999999999999999999988 9999999863 34444
Q ss_pred HHhh-cCCCCccccCC-----ch-hHHHHHH--------HcC--cccCCeEEEECCCCCccccch
Q 011791 156 KRDL-GSMPWLALPFK-----DK-SREKLAR--------YFE--LSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 156 ~~~~-~~~~~~~~~~~-----~~-~~~~l~~--------~~~--v~~~P~~~lid~~G~i~~~~~ 203 (477)
.+++ ++.. +.+|.. .+ ......+ .++ +...|+.+|||++|+++++..
T Consensus 85 ~~~~~~~~~-~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~ 148 (167)
T PLN02412 85 QQTVCTRFK-AEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYA 148 (167)
T ss_pred HHHHHHccC-CCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEEC
Confidence 4443 3321 222221 11 1111111 112 566899999999999998875
|
|
| >PRK00522 tpx lipid hydroperoxide peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-16 Score=139.97 Aligned_cols=118 Identities=16% Similarity=0.174 Sum_probs=97.0
Q ss_pred hccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCC-CccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHh
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSS-YKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 158 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~w-C~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~ 158 (477)
.+|.++|+|.+ +.+|+.+++++++||+++|+||++| |++|..++|.|+++++++. + ++||+||.|.. ...+++
T Consensus 19 ~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~--~~vv~vs~D~~-~~~~~f 93 (167)
T PRK00522 19 QVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--N--TVVLCISADLP-FAQKRF 93 (167)
T ss_pred CCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--C--cEEEEEeCCCH-HHHHHH
Confidence 36889999964 8899999999999999999999999 9999999999999999983 4 99999999853 445666
Q ss_pred hcCCCCccccCCch-hHHHHHHHcCcccCC---------eEEEECCCCCccccch
Q 011791 159 LGSMPWLALPFKDK-SREKLARYFELSTLP---------TLVIIGPDGKTLHSNV 203 (477)
Q Consensus 159 ~~~~~~~~~~~~~~-~~~~l~~~~~v~~~P---------~~~lid~~G~i~~~~~ 203 (477)
.++.....++...+ ....+++.||+...| +++|||++|+|++..+
T Consensus 94 ~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~ 148 (167)
T PRK00522 94 CGAEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSEL 148 (167)
T ss_pred HHhCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEE
Confidence 66654322444444 345789999998777 9999999999998875
|
|
| >cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx) | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.3e-16 Score=136.66 Aligned_cols=117 Identities=21% Similarity=0.208 Sum_probs=95.1
Q ss_pred ccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCC-CccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhh
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSS-YKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 159 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~w-C~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~ 159 (477)
+|..+|+|.+ +.+|+.+++++++||+++|+||++| |++|+.++|.|++++++++ | +.||+||.|. .+..+++.
T Consensus 2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~--~~vi~Is~d~-~~~~~~~~ 76 (143)
T cd03014 2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--N--TVVLTISADL-PFAQKRWC 76 (143)
T ss_pred CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--C--CEEEEEECCC-HHHHHHHH
Confidence 4788999955 8999999999999999999999998 6999999999999999974 4 8999999986 44455566
Q ss_pred cCCCCccccCCchhH-HHHHHHcCccc------CCeEEEECCCCCccccch
Q 011791 160 GSMPWLALPFKDKSR-EKLARYFELST------LPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 160 ~~~~~~~~~~~~~~~-~~l~~~~~v~~------~P~~~lid~~G~i~~~~~ 203 (477)
+++....++...+.. ..+.+.||+.. .|+++|||++|+|+....
T Consensus 77 ~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~ 127 (143)
T cd03014 77 GAEGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVEL 127 (143)
T ss_pred HhcCCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEE
Confidence 655433444444443 67888999853 799999999999998875
|
Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based |
| >cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.2e-16 Score=134.31 Aligned_cols=115 Identities=23% Similarity=0.365 Sum_probs=102.4
Q ss_pred CCccee-ccCCCceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCC
Q 011791 246 DLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 323 (477)
Q Consensus 246 ~p~f~l-~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~ 323 (477)
.|+|.+ +.+|+.+++++++||+++|+|| ++||++|...+|.|++++++++.+ ++.+++|+.| +....++|.++++
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~~~~i~is~d-~~~~~~~~~~~~~ 78 (140)
T cd02971 2 APDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG--GAEVLGVSVD-SPFSHKAWAEKEG 78 (140)
T ss_pred CCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCC-CHHHHHHHHhccc
Confidence 478998 9999999999999999999999 789999999999999999999754 6999999998 5577889999884
Q ss_pred CceeccCcchhHHHHHhcCCCCcc---------eEEEECCCCcEEEecc
Q 011791 324 WLALPFGDARKASLSRKFKVSGIP---------MLVAIGPSGRTITKEA 363 (477)
Q Consensus 324 ~~~~p~~~d~~~~l~~~~~v~~~P---------t~~lid~~G~iv~~~~ 363 (477)
-..++++.|....+.+.||+...| ++++||++|+|+.++.
T Consensus 79 ~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~ 127 (140)
T cd02971 79 GLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEV 127 (140)
T ss_pred CCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEe
Confidence 477888888888999999998766 8999999999999853
|
PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a |
| >PRK10382 alkyl hydroperoxide reductase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.6e-16 Score=139.53 Aligned_cols=119 Identities=17% Similarity=0.270 Sum_probs=99.3
Q ss_pred hccCCCccee----ccCCCceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHH
Q 011791 242 LVSGDLDFVV----GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFD 316 (477)
Q Consensus 242 ~~~~~p~f~l----~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~ 316 (477)
++...|+|.. +-+..++++++++||++||+|| +.||+.|..+++.|++++++|+++ +++|++||.|. ....+
T Consensus 4 ~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~--g~~vigIS~D~-~~~~~ 80 (187)
T PRK10382 4 INTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL--GVDVYSVSTDT-HFTHK 80 (187)
T ss_pred cCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC--CCEEEEEeCCC-HHHHH
Confidence 4566788876 2344567888999999999999 999999999999999999999876 69999999984 45666
Q ss_pred HHHhcC---CCceeccCcchhHHHHHhcCC----CCc--ceEEEECCCCcEEEecc
Q 011791 317 EFFKGM---PWLALPFGDARKASLSRKFKV----SGI--PMLVAIGPSGRTITKEA 363 (477)
Q Consensus 317 ~~~~~~---~~~~~p~~~d~~~~l~~~~~v----~~~--Pt~~lid~~G~iv~~~~ 363 (477)
+|.+.. .-+.||++.|.+..+++.||+ .++ |++++||++|+|+....
T Consensus 81 a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~ 136 (187)
T PRK10382 81 AWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEV 136 (187)
T ss_pred HHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEE
Confidence 666543 236789999999999999998 366 99999999999998853
|
|
| >cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.4e-16 Score=135.07 Aligned_cols=116 Identities=27% Similarity=0.459 Sum_probs=97.4
Q ss_pred CCccee-ccCCCceecccCCCCEEEEEEeCCCChh-hHhHhHHHHHHHHHHHhcC-CcEEEEEEeCCC---ChhHHHHHH
Q 011791 246 DLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPP-CRAFLPKLIDAYKKIKERN-ESLEVVFISSDR---DQTSFDEFF 319 (477)
Q Consensus 246 ~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~-C~~~~p~l~~l~~~~~~~~-~~~~iv~i~~d~---~~~~~~~~~ 319 (477)
.|+|.+ +.+|+.+++++++||++||+||++||++ |...++.|+++++++++++ .++++++|++|. +.+.+++|+
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~ 81 (142)
T cd02968 2 GPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYA 81 (142)
T ss_pred CCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHH
Confidence 478998 9999999999999999999999999997 9999999999999998753 359999999975 357788999
Q ss_pred hcCCCceeccCcch---hHHHHHhcCCCCc--------------ceEEEECCCCcEEEec
Q 011791 320 KGMPWLALPFGDAR---KASLSRKFKVSGI--------------PMLVAIGPSGRTITKE 362 (477)
Q Consensus 320 ~~~~~~~~p~~~d~---~~~l~~~~~v~~~--------------Pt~~lid~~G~iv~~~ 362 (477)
++++ ..++++.+. ...+++.||+... |+++|||++|+|+.+.
T Consensus 82 ~~~~-~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 140 (142)
T cd02968 82 KAFG-PGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYY 140 (142)
T ss_pred HHhC-CCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEee
Confidence 9886 455555543 4688999997644 5699999999999863
|
Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti |
| >PRK13190 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=141.08 Aligned_cols=138 Identities=19% Similarity=0.236 Sum_probs=106.9
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEE-EEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChh--HH-HH
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILL-YFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT--SF-DE 317 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~--~~-~~ 317 (477)
+...|+|.+ +..| .+++++++||+++| +||++||++|..+++.|++++++|+++ +++|++||+|.... +| ++
T Consensus 5 G~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~--~~~vi~vS~D~~~~~~~w~~~ 81 (202)
T PRK13190 5 GQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL--GVELVGLSVDSIYSHIAWLRD 81 (202)
T ss_pred CCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHh
Confidence 455699999 6666 79999999997766 689999999999999999999999976 79999999995422 33 23
Q ss_pred HHhcCC-CceeccCcchhHHHHHhcCCC------CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHH
Q 011791 318 FFKGMP-WLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYN 390 (477)
Q Consensus 318 ~~~~~~-~~~~p~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~ 390 (477)
+.+..+ .+.||++.|.+..+++.||+. .+|+++|||++|+|+.... +. .-..++++++++.++
T Consensus 82 ~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~------~~----~~~gr~~~ellr~l~ 151 (202)
T PRK13190 82 IEERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIY------YP----AETGRNIDEIIRITK 151 (202)
T ss_pred HHHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEE------eC----CCCCCCHHHHHHHHH
Confidence 334444 267999999999999999984 5899999999999997642 11 012345677777776
Q ss_pred HHH
Q 011791 391 EMA 393 (477)
Q Consensus 391 ~~~ 393 (477)
.+.
T Consensus 152 ~l~ 154 (202)
T PRK13190 152 ALQ 154 (202)
T ss_pred Hhh
Confidence 654
|
|
| >cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold | Back alignment and domain information |
|---|
Probab=99.65 E-value=7e-16 Score=134.34 Aligned_cols=116 Identities=27% Similarity=0.505 Sum_probs=96.9
Q ss_pred CCCcee-cCCCCeEecCCCCCCEEEEEEecCCCcc-chhhHHHHHHHHHHHhcCC-CcEEEEEEEcCC---CHHHHHHhh
Q 011791 86 SRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKA-SAEFTPRLVEVYEKLKGKG-ESFEIVLISLDD---EEESFKRDL 159 (477)
Q Consensus 86 ~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~-C~~~~p~l~~l~~~~~~~g-~~~~vv~is~D~---~~~~~~~~~ 159 (477)
+|+|.+ +.+|+.+++++++||+++|+||++||++ |..+++.|+++++++++.+ .++++++|+.|. +.+.+++++
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~ 81 (142)
T cd02968 2 GPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYA 81 (142)
T ss_pred CCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHH
Confidence 678854 8999999999999999999999999998 9999999999999998764 469999999985 356777777
Q ss_pred cCC--CCccccCCchhHHHHHHHcCccc--------------CCeEEEECCCCCcccc
Q 011791 160 GSM--PWLALPFKDKSREKLARYFELST--------------LPTLVIIGPDGKTLHS 201 (477)
Q Consensus 160 ~~~--~~~~~~~~~~~~~~l~~~~~v~~--------------~P~~~lid~~G~i~~~ 201 (477)
+++ +|..+....+....+++.||+.. .|+++|||++|+++..
T Consensus 82 ~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 139 (142)
T cd02968 82 KAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRY 139 (142)
T ss_pred HHhCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEe
Confidence 765 57777666555578999999744 3579999999998864
|
Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti |
| >PRK13599 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=141.28 Aligned_cols=140 Identities=18% Similarity=0.189 Sum_probs=111.7
Q ss_pred hhccCCCccee-ccCCCceecccCCCCEE-EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCC--hhHHH
Q 011791 241 VLVSGDLDFVV-GKNGGKVPVSDLAGKTI-LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD--QTSFD 316 (477)
Q Consensus 241 ~~~~~~p~f~l-~~~g~~~~l~~~~gk~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~--~~~~~ 316 (477)
.++...|+|.+ +.+|+...+++++||++ |+.||++||++|..+++.|++++++|+++ +++|++||+|.. ...|.
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~--gv~vigIS~D~~~~~~~w~ 80 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL--NTELIGLSVDQVFSHIKWV 80 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHH
Confidence 45667799999 88998888899999975 67899999999999999999999999877 699999999964 34567
Q ss_pred HHHhcC--CCceeccCcchhHHHHHhcCCC-------CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHH
Q 011791 317 EFFKGM--PWLALPFGDARKASLSRKFKVS-------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDG 387 (477)
Q Consensus 317 ~~~~~~--~~~~~p~~~d~~~~l~~~~~v~-------~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~ 387 (477)
++++++ .-+.||+..|.+..+++.||+. .+|++||||++|+|+.... +... ..++++++++
T Consensus 81 ~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~------~p~~----~gr~~~eilr 150 (215)
T PRK13599 81 EWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMY------YPQE----VGRNVDEILR 150 (215)
T ss_pred HhHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEE------cCCC----CCCCHHHHHH
Confidence 777653 1367999999989999999983 6899999999999998742 1111 2345667777
Q ss_pred HHHHH
Q 011791 388 QYNEM 392 (477)
Q Consensus 388 ~~~~~ 392 (477)
.++.+
T Consensus 151 ~l~~l 155 (215)
T PRK13599 151 ALKAL 155 (215)
T ss_pred HHHHh
Confidence 76654
|
|
| >cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-15 Score=136.27 Aligned_cols=117 Identities=22% Similarity=0.353 Sum_probs=94.2
Q ss_pred ccCcCCCcee-cCCC----CeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHH--
Q 011791 82 LTSHSRDFVI-SSDG----RKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEE-- 153 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g----~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~-- 153 (477)
+|..+|+|.+ +.+| +.+++++++||+++|+|| ++||++|..+++.|+++++++.+.| +.|++||+|....
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~--v~vv~Is~d~~~~~~ 78 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLN--AEVLGVSTDSHFSHL 78 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEecCCHHHHH
Confidence 4788999965 5555 799999999999999999 8999999999999999999999877 9999999986432
Q ss_pred HHHHhhc------CCCCccccCCchhHHHHHHHcCcc------cCCeEEEECCCCCccccch
Q 011791 154 SFKRDLG------SMPWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 154 ~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~ 203 (477)
.|.+... ..+| +...+....+.+.||+. .+|+++|||++|++++...
T Consensus 79 ~~~~~~~~~~~~~~~~f---~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~ 137 (173)
T cd03015 79 AWRNTPRKEGGLGKINF---PLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITV 137 (173)
T ss_pred HHHHhhhhhCCccCcce---eEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEe
Confidence 3443332 2333 33344457788999986 5789999999999998875
|
The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric |
| >TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.2e-16 Score=140.48 Aligned_cols=117 Identities=15% Similarity=0.147 Sum_probs=91.1
Q ss_pred hccCcCCCcee-cCCCC--eEecCCC-CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHH
Q 011791 81 VLTSHSRDFVI-SSDGR--KISVSDL-EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 156 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~--~v~ls~l-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~ 156 (477)
.+|.++|+|.+ +.+|+ .++++++ +||+++|+||++||++|+.++|.++++++ ++ ++||+|+.+++.+...
T Consensus 35 ~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~~--~~vi~V~~~~~~~~~~ 108 (173)
T TIGR00385 35 LIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----DG--LPIVGVDYKDQSQNAL 108 (173)
T ss_pred hcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----cC--CEEEEEECCCChHHHH
Confidence 56889999965 77776 4454565 79999999999999999999999887764 34 8999999987777777
Q ss_pred HhhcCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 157 RDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
++++++.+.......+....+.+.|++.++|++++||++|+++++..
T Consensus 109 ~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~ 155 (173)
T TIGR00385 109 KFLKELGNPYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRHA 155 (173)
T ss_pred HHHHHcCCCCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEEe
Confidence 77776542211122233456888999999999999999999998754
|
Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins. |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-15 Score=170.47 Aligned_cols=117 Identities=26% Similarity=0.359 Sum_probs=101.0
Q ss_pred ccCCCccee-c--cCCCceec-ccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeC---C--CChh
Q 011791 243 VSGDLDFVV-G--KNGGKVPV-SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS---D--RDQT 313 (477)
Q Consensus 243 ~~~~p~f~l-~--~~g~~~~l-~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~---d--~~~~ 313 (477)
+...|+|.. + .+|+++++ ++++||+|||+|||+||++|+.++|.|++++++|+++ ++.||+|+. | .+.+
T Consensus 394 g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~--~~~vvgV~~~~~D~~~~~~ 471 (1057)
T PLN02919 394 ATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ--PFTVVGVHSAKFDNEKDLE 471 (1057)
T ss_pred CCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC--CeEEEEEecccccccccHH
Confidence 344588876 3 68899988 6899999999999999999999999999999999865 699999974 3 2457
Q ss_pred HHHHHHhcCCCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEec
Q 011791 314 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 314 ~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
++++++.+++ +.+|...|....+.+.|+|.++|+++|||++|+++.+.
T Consensus 472 ~~~~~~~~~~-i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~iv~~~ 519 (1057)
T PLN02919 472 AIRNAVLRYN-ISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGKLIAQL 519 (1057)
T ss_pred HHHHHHHHhC-CCccEEECCchHHHHhcCCCccceEEEECCCCeEEEEE
Confidence 8889998887 56788788888999999999999999999999999873
|
|
| >TIGR03137 AhpC peroxiredoxin | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.1e-16 Score=140.25 Aligned_cols=121 Identities=17% Similarity=0.293 Sum_probs=94.2
Q ss_pred hccCcCCCcee-c-CCCC--eEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCH--H
Q 011791 81 VLTSHSRDFVI-S-SDGR--KISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE--E 153 (477)
Q Consensus 81 ~~g~~~p~fl~-~-~~g~--~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~--~ 153 (477)
++|..+|+|.+ + .+|+ .+++++++||+++|+|| ++||++|..+++.|++++++++++| ++||+||.|... .
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~g--v~vi~VS~D~~~~~~ 80 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLG--VEVYSVSTDTHFVHK 80 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHH
Confidence 67999999965 5 5676 68888999999999999 9999999999999999999999887 999999999643 2
Q ss_pred HHHHhhcCCCCccccCCchhHHHHHHHcCcc------cCCeEEEECCCCCccccch
Q 011791 154 SFKRDLGSMPWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~ 203 (477)
.|.+......-+.+|...+....+++.||+. ..|+++|||++|++++...
T Consensus 81 ~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~ 136 (187)
T TIGR03137 81 AWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEI 136 (187)
T ss_pred HHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEE
Confidence 2333221111122334444457789999985 4699999999999998764
|
This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. |
| >PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-15 Score=135.21 Aligned_cols=115 Identities=22% Similarity=0.294 Sum_probs=95.5
Q ss_pred ccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecC-CCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhh
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMS-SYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 159 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~ 159 (477)
.|..+|+|.+ +.+|+.+++++++||+++|+||++ ||+.|+.+++.|.+++++++++| +++|+|+.|. .+...++.
T Consensus 6 ~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~--v~vi~Is~d~-~~~~~~~~ 82 (154)
T PRK09437 6 AGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAG--VVVLGISTDK-PEKLSRFA 82 (154)
T ss_pred CCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCC-HHHHHHHH
Confidence 5888999965 899999999999999999999987 67889999999999999999887 9999999984 56677777
Q ss_pred cCC--CCccccCCchhHHHHHHHcCcccC------------CeEEEECCCCCccccc
Q 011791 160 GSM--PWLALPFKDKSREKLARYFELSTL------------PTLVIIGPDGKTLHSN 202 (477)
Q Consensus 160 ~~~--~~~~~~~~~~~~~~l~~~~~v~~~------------P~~~lid~~G~i~~~~ 202 (477)
+++ +|..+ .+....+.+.||+... |+.+|||++|+|+...
T Consensus 83 ~~~~~~~~~l---~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 136 (154)
T PRK09437 83 EKELLNFTLL---SDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVF 136 (154)
T ss_pred HHhCCCCeEE---ECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEE
Confidence 754 44444 3334668889998654 6789999999998875
|
|
| >cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-15 Score=132.26 Aligned_cols=113 Identities=23% Similarity=0.457 Sum_probs=95.9
Q ss_pred CCccee-ccCCCceecccCC-CCEE-EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcC
Q 011791 246 DLDFVV-GKNGGKVPVSDLA-GKTI-LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 322 (477)
Q Consensus 246 ~p~f~l-~~~g~~~~l~~~~-gk~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~ 322 (477)
.|+|.+ +.+|+.++++++. +|++ |++||++||++|+.++|.|++++++++++ +++||+|+.|.. +...+|.++.
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~--~v~vv~V~~~~~-~~~~~~~~~~ 78 (149)
T cd02970 2 APDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDAL--GVELVAVGPESP-EKLEAFDKGK 78 (149)
T ss_pred CCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhc--CeEEEEEeCCCH-HHHHHHHHhc
Confidence 478888 8999999999875 4554 55556999999999999999999999865 699999999854 4555777776
Q ss_pred CCceeccCcchhHHHHHhcCCC-----------------------------CcceEEEECCCCcEEEec
Q 011791 323 PWLALPFGDARKASLSRKFKVS-----------------------------GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 323 ~~~~~p~~~d~~~~l~~~~~v~-----------------------------~~Pt~~lid~~G~iv~~~ 362 (477)
+ +++|++.|.+..+.+.|++. .+|+.+|||++|+|++.+
T Consensus 79 ~-~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~ 146 (149)
T cd02970 79 F-LPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAH 146 (149)
T ss_pred C-CCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEe
Confidence 6 68999999999999999984 799999999999999874
|
Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins. |
| >cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-15 Score=132.51 Aligned_cols=115 Identities=27% Similarity=0.401 Sum_probs=95.6
Q ss_pred cCCCce-ecCCCCeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCC
Q 011791 85 HSRDFV-ISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSM 162 (477)
Q Consensus 85 ~~p~fl-~~~~g~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~ 162 (477)
++|+|. .+.+|+.+++++++||+++|+|| ++||++|...++.|.++++++.+++ ++||+|+.|. .+...++.+.+
T Consensus 2 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vv~is~d~-~~~~~~~~~~~ 78 (140)
T cd03017 2 KAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALG--AVVIGVSPDS-VESHAKFAEKY 78 (140)
T ss_pred CCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCC-HHHHHHHHHHh
Confidence 468885 48899999999999999999999 5899999999999999999998877 9999999985 46677777754
Q ss_pred CCccccCCchhHHHHHHHcCcccC---------CeEEEECCCCCccccch
Q 011791 163 PWLALPFKDKSREKLARYFELSTL---------PTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~v~~~---------P~~~lid~~G~i~~~~~ 203 (477)
. +.++...+....+.+.||+... |+++|+|++|++++...
T Consensus 79 ~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~ 127 (140)
T cd03017 79 G-LPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWR 127 (140)
T ss_pred C-CCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEe
Confidence 4 2333444445678999999888 99999999999988764
|
The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w |
| >cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.3e-15 Score=129.78 Aligned_cols=97 Identities=22% Similarity=0.479 Sum_probs=77.4
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.||++||+|||+||++|+.+.|.+.+++++++++ +.++.|++|.+. ...+.+.|+|
T Consensus 19 ~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~---~~~v~v~vd~~~---------------------~~~~~~~~~V 74 (142)
T cd02950 19 NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ---VNFVMLNVDNPK---------------------WLPEIDRYRV 74 (142)
T ss_pred CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC---eeEEEEEcCCcc---------------------cHHHHHHcCC
Confidence 5899999999999999999999999999998754 789999888543 1256789999
Q ss_pred CCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCCch
Q 011791 344 SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPE 398 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 398 (477)
.++|+++||+++|+++.+. .|.. .. ++|.+.+++++++.|.
T Consensus 75 ~~iPt~v~~~~~G~~v~~~-------~G~~----~~---~~l~~~l~~l~~~~~~ 115 (142)
T cd02950 75 DGIPHFVFLDREGNEEGQS-------IGLQ----PK---QVLAQNLDALVAGEPL 115 (142)
T ss_pred CCCCEEEEECCCCCEEEEE-------eCCC----CH---HHHHHHHHHHHcCCCC
Confidence 9999999999999999873 3322 22 5566777777765543
|
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. |
| >PTZ00256 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-15 Score=137.71 Aligned_cols=118 Identities=19% Similarity=0.327 Sum_probs=87.1
Q ss_pred cCcCCCcee-cCCCCeEecCCCCCCEE-EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC-------CHH
Q 011791 83 TSHSRDFVI-SSDGRKISVSDLEGKTI-GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EEE 153 (477)
Q Consensus 83 g~~~p~fl~-~~~g~~v~ls~l~gk~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~-------~~~ 153 (477)
+..+|+|.+ +.+|+.+++++++||++ ++.+||+||++|+.++|.|++++++|+++| ++||+|++|. +.+
T Consensus 17 ~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~g--v~vv~vs~~~~~~~~~~~~~ 94 (183)
T PTZ00256 17 TKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQG--LEILAFPCNQFMEQEPWDEP 94 (183)
T ss_pred CCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCC--cEEEEEecccccccCCCCHH
Confidence 567899954 89999999999999964 556699999999999999999999999887 9999999752 345
Q ss_pred HHHHhhc-CCCCccccCC-----ch-hHHHHHH------------HcCcccCCe---EEEECCCCCccccch
Q 011791 154 SFKRDLG-SMPWLALPFK-----DK-SREKLAR------------YFELSTLPT---LVIIGPDGKTLHSNV 203 (477)
Q Consensus 154 ~~~~~~~-~~~~~~~~~~-----~~-~~~~l~~------------~~~v~~~P~---~~lid~~G~i~~~~~ 203 (477)
...+++. ++. +.+|.. .+ ....+.+ .+++.++|+ .+|||++|+++.+..
T Consensus 95 ~~~~f~~~~~~-~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~ 165 (183)
T PTZ00256 95 EIKEYVQKKFN-VDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFS 165 (183)
T ss_pred HHHHHHHHhcC-CCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEEC
Confidence 6666654 332 222222 11 1112221 235778995 699999999998765
|
|
| >PRK13728 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.7e-15 Score=131.83 Aligned_cols=94 Identities=19% Similarity=0.263 Sum_probs=79.1
Q ss_pred CCcceeccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCc
Q 011791 246 DLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWL 325 (477)
Q Consensus 246 ~p~f~l~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~ 325 (477)
.++|.+ .+|+.+++++++ ||+||++||++|++++|.|+++++++ +++|++|++|...+ .
T Consensus 55 ~~~f~l-~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~-----g~~Vi~Vs~D~~~~-----------~ 113 (181)
T PRK13728 55 PRWFRL-SNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY-----GFSVFPYTLDGQGD-----------T 113 (181)
T ss_pred CCccCC-CCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc-----CCEEEEEEeCCCCC-----------C
Confidence 467776 489999999997 77899999999999999999999997 38899999986532 5
Q ss_pred eeccCcc-hhHHHHHhcCC--CCcceEEEECCCCcEEE
Q 011791 326 ALPFGDA-RKASLSRKFKV--SGIPMLVAIGPSGRTIT 360 (477)
Q Consensus 326 ~~p~~~d-~~~~l~~~~~v--~~~Pt~~lid~~G~iv~ 360 (477)
.||...+ ....+.+.|++ .++|++||||++|+++.
T Consensus 114 ~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 114 AFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred CCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 7787764 55667888995 69999999999999964
|
|
| >PRK15000 peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-15 Score=136.89 Aligned_cols=139 Identities=16% Similarity=0.220 Sum_probs=103.9
Q ss_pred hccCCCccee-cc--CCCc---eecccC-CCCEEEEEEeCC-CChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCCh-
Q 011791 242 LVSGDLDFVV-GK--NGGK---VPVSDL-AGKTILLYFSAH-WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ- 312 (477)
Q Consensus 242 ~~~~~p~f~l-~~--~g~~---~~l~~~-~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~- 312 (477)
++...|+|.+ +. +|+. ++++++ +||+++|+||+. ||+.|..+++.|++++++|+++ +++|++||+|...
T Consensus 4 vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~--g~~vigvS~D~~~~ 81 (200)
T PRK15000 4 VTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR--GVEVVGVSFDSEFV 81 (200)
T ss_pred CCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHH
Confidence 4556799998 54 3453 345554 799999999995 9999999999999999999976 7999999999542
Q ss_pred -hHHHH-HHhcCC--CceeccCcchhHHHHHhcCCC------CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHH
Q 011791 313 -TSFDE-FFKGMP--WLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERM 382 (477)
Q Consensus 313 -~~~~~-~~~~~~--~~~~p~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~ 382 (477)
..|.+ +.+..+ -+.+|++.|....+++.||+. ++|++++||++|+|+.... +.. + ..+++
T Consensus 82 ~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~-------~~~--~-~gr~~ 151 (200)
T PRK15000 82 HNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVV-------NDL--P-LGRNI 151 (200)
T ss_pred HHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEe-------cCC--C-CCCCH
Confidence 23333 233333 258999999999999999997 7999999999999998742 111 1 12456
Q ss_pred HHHHHHHHHH
Q 011791 383 KEIDGQYNEM 392 (477)
Q Consensus 383 ~~l~~~~~~~ 392 (477)
+++++.++.+
T Consensus 152 ~eilr~l~al 161 (200)
T PRK15000 152 DEMLRMVDAL 161 (200)
T ss_pred HHHHHHHHHh
Confidence 7777766653
|
|
| >cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-15 Score=132.31 Aligned_cols=118 Identities=19% Similarity=0.288 Sum_probs=94.6
Q ss_pred ccCcCCCcee-cCCCCeEecCCCCC-CEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHh
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDLEG-KTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 158 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l~g-k~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~ 158 (477)
+|..+|+|.+ +.+|+.+++++++| |+++|.|| ++||++|+..+|.|+++++++++++ +.+|+|+.|. .+..+++
T Consensus 3 ~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--v~vi~vs~d~-~~~~~~~ 79 (149)
T cd03018 3 VGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAG--AEVLGISVDS-PFSLRAW 79 (149)
T ss_pred CCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCC--CEEEEecCCC-HHHHHHH
Confidence 5788999955 88999999999999 99888887 9999999999999999999998877 9999999885 4456666
Q ss_pred hcCCCCccccCCchhH--HHHHHHcCcc----cC--CeEEEECCCCCccccch
Q 011791 159 LGSMPWLALPFKDKSR--EKLARYFELS----TL--PTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 159 ~~~~~~~~~~~~~~~~--~~l~~~~~v~----~~--P~~~lid~~G~i~~~~~ 203 (477)
.+++. +.++...+.. ..+.+.||+. ++ |+++|||++|++++...
T Consensus 80 ~~~~~-~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~ 131 (149)
T cd03018 80 AEENG-LTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWV 131 (149)
T ss_pred HHhcC-CCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEe
Confidence 66543 2233333333 6788899986 33 48999999999998875
|
AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. |
| >cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.8e-15 Score=135.89 Aligned_cols=136 Identities=16% Similarity=0.212 Sum_probs=101.5
Q ss_pred ccCCCccee-ccCCCceecccCCC-CEE-EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHH
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAG-KTI-LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 319 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~g-k~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~ 319 (477)
+...|+|.+ +.+| .+++++++| |++ |+.||++||+.|..+++.|++++++|+++ +++|++||+|.. ...+++.
T Consensus 2 G~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~--gv~vigvS~D~~-~~~~~~~ 77 (203)
T cd03016 2 GDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKR--NVKLIGLSVDSV-ESHIKWI 77 (203)
T ss_pred cCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHc--CCEEEEEECCCH-HHHHHHH
Confidence 345689998 6666 689999988 755 55888999999999999999999999876 799999999953 3333333
Q ss_pred h---cC--CCceeccCcchhHHHHHhcCCC----C----cceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHH
Q 011791 320 K---GM--PWLALPFGDARKASLSRKFKVS----G----IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEID 386 (477)
Q Consensus 320 ~---~~--~~~~~p~~~d~~~~l~~~~~v~----~----~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~ 386 (477)
+ ++ .-+.||++.|.+..+++.||+. + .|++||||++|+|+.... +... ..++.++++
T Consensus 78 ~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~------~~~~----~gr~~~ell 147 (203)
T cd03016 78 EDIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILY------YPAT----TGRNFDEIL 147 (203)
T ss_pred hhHHHhcCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEe------cCCC----CCCCHHHHH
Confidence 2 21 2377899999999999999985 2 457999999999998742 1111 123456676
Q ss_pred HHHHHH
Q 011791 387 GQYNEM 392 (477)
Q Consensus 387 ~~~~~~ 392 (477)
+.++++
T Consensus 148 ~~l~~l 153 (203)
T cd03016 148 RVVDAL 153 (203)
T ss_pred HHHHHH
Confidence 666654
|
They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an |
| >cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.3e-15 Score=123.48 Aligned_cols=109 Identities=27% Similarity=0.397 Sum_probs=93.7
Q ss_pred ecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCC-HHHHHHhhcCCCCccccC
Q 011791 91 ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE-EESFKRDLGSMPWLALPF 169 (477)
Q Consensus 91 ~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~-~~~~~~~~~~~~~~~~~~ 169 (477)
.+.+|+.+++++++||+++|+||++||++|+..++.|.++.+++.+.+ +.+++|++|.+ .+.++++++.++ ..+++
T Consensus 5 ~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~~~v~~d~~~~~~~~~~~~~~~-~~~~~ 81 (116)
T cd02966 5 PDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDG--VEVVGVNVDDDDPAAVKAFLKKYG-ITFPV 81 (116)
T ss_pred cCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCC--eEEEEEECCCCCHHHHHHHHHHcC-CCcce
Confidence 368899999999999999999999999999999999999999997555 99999999987 888999998765 33333
Q ss_pred CchhHHHHHHHcCcccCCeEEEECCCCCccccc
Q 011791 170 KDKSREKLARYFELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 170 ~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 202 (477)
..+....+.+.|++.++|+++|+|++|++++..
T Consensus 82 ~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~~ 114 (116)
T cd02966 82 LLDPDGELAKAYGVRGLPTTFLIDRDGRIRARH 114 (116)
T ss_pred EEcCcchHHHhcCcCccceEEEECCCCcEEEEe
Confidence 334456789999999999999999999988653
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. |
| >KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=147.09 Aligned_cols=207 Identities=19% Similarity=0.284 Sum_probs=129.1
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.++.++|.|+++||++|....|.+.++...+++. +.+..| |.+. ...+++.|++
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~---~~~~~v--d~~~---------------------~~~~~~~y~i 99 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK---VKIGAV--DCDE---------------------HKDLCEKYGI 99 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc---eEEEEe--Cchh---------------------hHHHHHhcCC
Confidence 3568999999999999999999999999999874 444444 4332 2568999999
Q ss_pred ccCCeEEEECCCCCccccchhhHHhhcCCCCCCCChhhHHHHHHHHHHHhhhhhhhhhhccCCCcceeccCCCceeccc-
Q 011791 184 STLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKVPVSD- 262 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~~~~~i~~~g~~a~P~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~p~f~l~~~g~~~~l~~- 262 (477)
.++|++.++.++..++.... +-+...+.......- .......... .-+.+ .-..+..-.
T Consensus 100 ~gfPtl~~f~~~~~~~~~~~------------~~~~~~~~~~~~~~~----~~~~~~~~~~--~v~~l--~~~~~~~~~~ 159 (383)
T KOG0191|consen 100 QGFPTLKVFRPGKKPIDYSG------------PRNAESLAEFLIKEL----EPSVKKLVEG--EVFEL--TKDNFDETVK 159 (383)
T ss_pred ccCcEEEEEcCCCceeeccC------------cccHHHHHHHHHHhh----ccccccccCC--ceEEc--cccchhhhhh
Confidence 99999999987733322211 012222222211110 0000000000 01111 111111101
Q ss_pred CCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcC
Q 011791 263 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 342 (477)
Q Consensus 263 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 342 (477)
.....+++.||+|||++|+.+.|.+.++...++. ...+++..++.+ . ...++..++
T Consensus 160 ~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~-~~~v~~~~~d~~--~---------------------~~~~~~~~~ 215 (383)
T KOG0191|consen 160 DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS-KENVELGKIDAT--V---------------------HKSLASRLE 215 (383)
T ss_pred ccCcceEEEEeccccHHhhhcChHHHHHHHHhcc-CcceEEEeeccc--h---------------------HHHHhhhhc
Confidence 1256899999999999999999999999998875 235666666554 2 236889999
Q ss_pred CCCcceEEEECCCCc-EEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcC
Q 011791 343 VSGIPMLVAIGPSGR-TITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKG 395 (477)
Q Consensus 343 v~~~Pt~~lid~~G~-iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 395 (477)
|+++||+.++-++.. +... -..++.+.+...+......
T Consensus 216 v~~~Pt~~~f~~~~~~~~~~---------------~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 216 VRGYPTLKLFPPGEEDIYYY---------------SGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred ccCCceEEEecCCCcccccc---------------cccccHHHHHHHHHhhcCC
Confidence 999999999955555 2222 1244456676666665544
|
|
| >PRK10382 alkyl hydroperoxide reductase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.8e-15 Score=134.99 Aligned_cols=122 Identities=16% Similarity=0.252 Sum_probs=96.3
Q ss_pred hhccCcCCCce----ecCCCCeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCH--
Q 011791 80 SVLTSHSRDFV----ISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE-- 152 (477)
Q Consensus 80 ~~~g~~~p~fl----~~~~g~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~-- 152 (477)
..+|..+|+|. .+.+...+++++++||+++|+|| +.||++|..+++.|.++++++.+.| ++||+||.|...
T Consensus 2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g--~~vigIS~D~~~~~ 79 (187)
T PRK10382 2 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG--VDVYSVSTDTHFTH 79 (187)
T ss_pred CccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCC--CEEEEEeCCCHHHH
Confidence 45789999993 24556778888999999999999 9999999999999999999999888 999999998643
Q ss_pred HHHHHhhcCCCCccccCCchhHHHHHHHcCc----ccC--CeEEEECCCCCccccch
Q 011791 153 ESFKRDLGSMPWLALPFKDKSREKLARYFEL----STL--PTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v----~~~--P~~~lid~~G~i~~~~~ 203 (477)
..|.+....+.-+.+|...+....+++.||+ .++ |+++|||++|+|++...
T Consensus 80 ~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~ 136 (187)
T PRK10382 80 KAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEV 136 (187)
T ss_pred HHHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEE
Confidence 2344333222123445555566889999998 356 99999999999988764
|
|
| >PRK13191 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.6e-15 Score=136.24 Aligned_cols=138 Identities=12% Similarity=0.203 Sum_probs=107.4
Q ss_pred hccCCCccee-ccCCCceec-ccCCCCEEEE-EEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChh--HHH
Q 011791 242 LVSGDLDFVV-GKNGGKVPV-SDLAGKTILL-YFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT--SFD 316 (477)
Q Consensus 242 ~~~~~p~f~l-~~~g~~~~l-~~~~gk~vll-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~--~~~ 316 (477)
++...|+|.+ +.+|+ +.+ ++++||+++| +||++||+.|..+++.|++++++|+++ +++|++||+|.... .|.
T Consensus 9 iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~--g~~VigvS~Ds~~~h~aw~ 85 (215)
T PRK13191 9 IGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL--NTELIGLSVDSNISHIEWV 85 (215)
T ss_pred CCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHH
Confidence 4566799999 77776 555 5589997665 788999999999999999999999977 79999999996533 466
Q ss_pred HHHhcC-C-CceeccCcchhHHHHHhcCCC-------CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHH
Q 011791 317 EFFKGM-P-WLALPFGDARKASLSRKFKVS-------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDG 387 (477)
Q Consensus 317 ~~~~~~-~-~~~~p~~~d~~~~l~~~~~v~-------~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~ 387 (477)
+++++. + -+.||++.|.+..+++.||+. ..|++||||++|+|+...... . + ..++++++++
T Consensus 86 ~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~------~---~-~gr~~~eilr 155 (215)
T PRK13191 86 MWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYP------M---E-IGRNIDEILR 155 (215)
T ss_pred hhHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecC------C---C-CCCCHHHHHH
Confidence 666642 2 377999999999999999973 479999999999999874311 1 1 2346777777
Q ss_pred HHHHH
Q 011791 388 QYNEM 392 (477)
Q Consensus 388 ~~~~~ 392 (477)
.++.+
T Consensus 156 ~l~al 160 (215)
T PRK13191 156 AIRAL 160 (215)
T ss_pred HHHHh
Confidence 77764
|
|
| >TIGR02540 gpx7 putative glutathione peroxidase Gpx7 | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.3e-15 Score=130.60 Aligned_cols=113 Identities=17% Similarity=0.210 Sum_probs=83.5
Q ss_pred Cce-ecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC-------CCHHHHHHhh
Q 011791 88 DFV-ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------DEEESFKRDL 159 (477)
Q Consensus 88 ~fl-~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D-------~~~~~~~~~~ 159 (477)
+|. .+.+|+.+++++++||+++|+|||+||++|+.++|.|++++++|+++| ++|++|+.+ ++.+...+++
T Consensus 4 ~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~--~~v~~i~~~~~~~~~~d~~~~~~~f~ 81 (153)
T TIGR02540 4 SFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSH--FNVLAFPCNQFGESEPDSSKEIESFA 81 (153)
T ss_pred cceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCC--eEEEEEeccccccCCCCCHHHHHHHH
Confidence 453 489999999999999999999999999999999999999999999888 999999952 3456677777
Q ss_pred cC-CCCccccCCc-----hhHHHHHHHcC---cccCCe----EEEECCCCCccccch
Q 011791 160 GS-MPWLALPFKD-----KSREKLARYFE---LSTLPT----LVIIGPDGKTLHSNV 203 (477)
Q Consensus 160 ~~-~~~~~~~~~~-----~~~~~l~~~~~---v~~~P~----~~lid~~G~i~~~~~ 203 (477)
++ .. +.+|... +........|. ...+|+ .+|||++|+++....
T Consensus 82 ~~~~~-~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~ 137 (153)
T TIGR02540 82 RRNYG-VTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWR 137 (153)
T ss_pred HHhcC-CCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEEC
Confidence 53 32 2223211 11111111222 235898 999999999998764
|
This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7. |
| >cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.7e-15 Score=119.81 Aligned_cols=74 Identities=16% Similarity=0.402 Sum_probs=62.7
Q ss_pred CCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcC
Q 011791 263 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 342 (477)
Q Consensus 263 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 342 (477)
.+||+|||+|||+||++|+.+.|.|+++++++ . ++.++.|+.|.+.. ...+++.|+
T Consensus 13 ~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~---~v~~~~vd~d~~~~--------------------~~~l~~~~~ 68 (103)
T cd02985 13 AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N---DVVFLLVNGDENDS--------------------TMELCRREK 68 (103)
T ss_pred cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C---CCEEEEEECCCChH--------------------HHHHHHHcC
Confidence 35899999999999999999999999999988 2 47788888775431 236889999
Q ss_pred CCCcceEEEECCCCcEEEe
Q 011791 343 VSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 343 v~~~Pt~~lid~~G~iv~~ 361 (477)
|+++||++|+ ++|+++.+
T Consensus 69 V~~~Pt~~~~-~~G~~v~~ 86 (103)
T cd02985 69 IIEVPHFLFY-KDGEKIHE 86 (103)
T ss_pred CCcCCEEEEE-eCCeEEEE
Confidence 9999999999 89999877
|
CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. |
| >cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.8e-15 Score=127.02 Aligned_cols=117 Identities=24% Similarity=0.320 Sum_probs=94.2
Q ss_pred CCCcee-cCCCCeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCC
Q 011791 86 SRDFVI-SSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMP 163 (477)
Q Consensus 86 ~p~fl~-~~~g~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~ 163 (477)
+|+|.+ +.+|+++++++++||+++|+|| ++||++|...+|.|.+++++++..+ +.+|+|+.|. .+..+++.+++.
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--~~~i~is~d~-~~~~~~~~~~~~ 78 (140)
T cd02971 2 APDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGG--AEVLGVSVDS-PFSHKAWAEKEG 78 (140)
T ss_pred CCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCC-HHHHHHHHhccc
Confidence 578854 8899999999999999999999 7899999999999999999997766 9999999984 455666666552
Q ss_pred CccccCCchhHHHHHHHcCcccCC---------eEEEECCCCCccccchhh
Q 011791 164 WLALPFKDKSREKLARYFELSTLP---------TLVIIGPDGKTLHSNVAE 205 (477)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~v~~~P---------~~~lid~~G~i~~~~~~~ 205 (477)
-..+++..+....+.+.||+...| +++|||++|++++.....
T Consensus 79 ~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~ 129 (140)
T cd02971 79 GLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEP 129 (140)
T ss_pred CCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecC
Confidence 123333344445788999987665 899999999999987543
|
PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a |
| >PTZ00137 2-Cys peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-14 Score=137.03 Aligned_cols=140 Identities=16% Similarity=0.144 Sum_probs=106.2
Q ss_pred hhccCCCccee-c-cCC--CceecccC-CCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCC--h
Q 011791 241 VLVSGDLDFVV-G-KNG--GKVPVSDL-AGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD--Q 312 (477)
Q Consensus 241 ~~~~~~p~f~l-~-~~g--~~~~l~~~-~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~--~ 312 (477)
.++...|+|.+ + .+| +.++++++ +||++||+|| +.||++|..+++.|++++++|+++ +++|++||+|.. .
T Consensus 69 ~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~--gv~VigIS~Ds~~~h 146 (261)
T PTZ00137 69 LVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER--GVKVLGVSVDSPFSH 146 (261)
T ss_pred cCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHH
Confidence 45666799997 5 355 46899998 8998888888 899999999999999999999977 799999999963 2
Q ss_pred hHHHH-HHhcC--CCceeccCcchhHHHHHhcCCC-----CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHH
Q 011791 313 TSFDE-FFKGM--PWLALPFGDARKASLSRKFKVS-----GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKE 384 (477)
Q Consensus 313 ~~~~~-~~~~~--~~~~~p~~~d~~~~l~~~~~v~-----~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~ 384 (477)
..|.+ ..++. .-+.||++.|.+..+++.||+. ..|+++|||++|+|+.... +... ..+++++
T Consensus 147 ~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~------~~~~----~gr~v~e 216 (261)
T PTZ00137 147 KAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAV------YDLG----LGRSVDE 216 (261)
T ss_pred HHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEE------eCCC----CCCCHHH
Confidence 23333 22222 2367999999999999999985 5899999999999998753 1111 1235666
Q ss_pred HHHHHHHH
Q 011791 385 IDGQYNEM 392 (477)
Q Consensus 385 l~~~~~~~ 392 (477)
+++.++.+
T Consensus 217 iLr~l~al 224 (261)
T PTZ00137 217 TLRLFDAV 224 (261)
T ss_pred HHHHHHHh
Confidence 76666643
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-14 Score=163.23 Aligned_cols=121 Identities=20% Similarity=0.279 Sum_probs=97.9
Q ss_pred hhccCcCCCcee---cCCCCeEec-CCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEc---CC--
Q 011791 80 SVLTSHSRDFVI---SSDGRKISV-SDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL---DD-- 150 (477)
Q Consensus 80 ~~~g~~~p~fl~---~~~g~~v~l-s~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~---D~-- 150 (477)
...|.++|+|.. ..+|+++++ ++++||+|+|+|||+||+||+.++|.|++++++|++++ |.||+|+. |.
T Consensus 391 ~~~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~--~~vvgV~~~~~D~~~ 468 (1057)
T PLN02919 391 KKTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQP--FTVVGVHSAKFDNEK 468 (1057)
T ss_pred cccCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCC--eEEEEEecccccccc
Confidence 345889999954 368999998 68999999999999999999999999999999998877 99999974 33
Q ss_pred CHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 151 EEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
+.+.+++++.+.. +.+|...+....+.+.|++.++|+++|+|++|+++.+..
T Consensus 469 ~~~~~~~~~~~~~-i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~iv~~~~ 520 (1057)
T PLN02919 469 DLEAIRNAVLRYN-ISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGKLIAQLS 520 (1057)
T ss_pred cHHHHHHHHHHhC-CCccEEECCchHHHHhcCCCccceEEEECCCCeEEEEEe
Confidence 4566777777554 223333344457889999999999999999999987753
|
|
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.4e-13 Score=140.74 Aligned_cols=183 Identities=17% Similarity=0.289 Sum_probs=108.2
Q ss_pred cEEEEEEEcCCCH---HHH----HHhhcCCC--CccccCCch-hHHHHHHHcCcc--cCCeEEEECCCCCccccchhhHH
Q 011791 140 SFEIVLISLDDEE---ESF----KRDLGSMP--WLALPFKDK-SREKLARYFELS--TLPTLVIIGPDGKTLHSNVAEAI 207 (477)
Q Consensus 140 ~~~vv~is~D~~~---~~~----~~~~~~~~--~~~~~~~~~-~~~~l~~~~~v~--~~P~~~lid~~G~i~~~~~~~~i 207 (477)
++.++++..+.+. +.+ ++...+++ ++.+...+. ....+++.||+. .+|++++++.+|...+...
T Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~~~~~~~~~~~~~~~~P~~vi~~~~~~~~y~~~---- 310 (462)
T TIGR01130 235 PLVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFGRELEYFGLKAEKFPAVAIQDLEGNKKYPMD---- 310 (462)
T ss_pred CceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHHhHHHHHHcCCCccCCceEEEEeCCcccccCCC----
Confidence 3556666655443 222 22333333 343333332 345688899997 6999999998872222110
Q ss_pred hhcCCCCCCCChhhHHHHHHHHHHHhhhhhhhhhhccCC-CcceeccCCCceecccC-CCCEEEEEEeCCCChhhHhHhH
Q 011791 208 EEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGD-LDFVVGKNGGKVPVSDL-AGKTILLYFSAHWCPPCRAFLP 285 (477)
Q Consensus 208 ~~~g~~a~P~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-p~f~l~~~g~~~~l~~~-~gk~vll~F~a~wC~~C~~~~p 285 (477)
....+.+.+..+..........+...+...... ..-+..+.+.++.-.-. .++++||+|||+||++|+.+.|
T Consensus 311 ------~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p 384 (462)
T TIGR01130 311 ------QEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAP 384 (462)
T ss_pred ------cCCCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHH
Confidence 002466666766655433332222222111111 11122455555543222 4799999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcceEEEECCCCc
Q 011791 286 KLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGR 357 (477)
Q Consensus 286 ~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~ 357 (477)
.+.++++.++....++.++.++++... +.. ++|.++|+++++.++++
T Consensus 385 ~~~~~~~~~~~~~~~i~~~~id~~~n~------------------------~~~-~~i~~~Pt~~~~~~~~~ 431 (462)
T TIGR01130 385 IYEELAEKYKDAESDVVIAKMDATAND------------------------VPP-FEVEGFPTIKFVPAGKK 431 (462)
T ss_pred HHHHHHHHhhcCCCcEEEEEEECCCCc------------------------cCC-CCccccCEEEEEeCCCC
Confidence 999999999862224667766665332 233 89999999999954444
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.6e-15 Score=124.54 Aligned_cols=107 Identities=18% Similarity=0.359 Sum_probs=86.8
Q ss_pred CCce-ecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCC-HHHHHHhhcCCCC
Q 011791 87 RDFV-ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE-EESFKRDLGSMPW 164 (477)
Q Consensus 87 p~fl-~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~-~~~~~~~~~~~~~ 164 (477)
|+|. .+.+|+.+++++++||+++|+||++||++|+.++|.|.+++++ +.+++|+.|.+ .+.+.++.+++.
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-------~~~i~i~~~~~~~~~~~~~~~~~~- 72 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-------YPVVSVALRSGDDGAVARFMQKKG- 72 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-------CCEEEEEccCCCHHHHHHHHHHcC-
Confidence 5664 4889999999999999999999999999999999999999876 45788888764 777888777654
Q ss_pred ccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccc
Q 011791 165 LALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 202 (477)
+.++...+....+.+.|++.++|+++++|++| ++...
T Consensus 73 ~~~~~~~d~~~~~~~~~~i~~~P~~~vid~~g-i~~~~ 109 (123)
T cd03011 73 YGFPVINDPDGVISARWGVSVTPAIVIVDPGG-IVFVT 109 (123)
T ss_pred CCccEEECCCcHHHHhCCCCcccEEEEEcCCC-eEEEE
Confidence 33444334446789999999999999999998 66543
|
The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. |
| >PTZ00253 tryparedoxin peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-14 Score=132.18 Aligned_cols=138 Identities=19% Similarity=0.262 Sum_probs=105.4
Q ss_pred hccCCCccee-----ccCCCceecccCCCCEEEEEEeC-CCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHH
Q 011791 242 LVSGDLDFVV-----GKNGGKVPVSDLAGKTILLYFSA-HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSF 315 (477)
Q Consensus 242 ~~~~~p~f~l-----~~~g~~~~l~~~~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~ 315 (477)
++...|+|.+ +.+|+++++++++||+++|+||+ .||++|..+++.|.+++++|+++ +++||+||+|.... .
T Consensus 8 ~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~--g~~vv~IS~d~~~~-~ 84 (199)
T PTZ00253 8 INHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL--NCEVLACSMDSEYA-H 84 (199)
T ss_pred cCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc--CCEEEEEeCCCHHH-H
Confidence 3556699985 35668999999999999999995 88999999999999999999986 79999999996533 2
Q ss_pred HHHHh---c---CCCceeccCcchhHHHHHhcCCC------CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHH
Q 011791 316 DEFFK---G---MPWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMK 383 (477)
Q Consensus 316 ~~~~~---~---~~~~~~p~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~ 383 (477)
.++.. . .+-++||++.|.+..+++.||+. .+|+.+|||++|+|+.... +.. + ..++++
T Consensus 85 ~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~-------~~~--~-~~r~~~ 154 (199)
T PTZ00253 85 LQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITV-------NDM--P-VGRNVE 154 (199)
T ss_pred HHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEe-------cCC--C-CCCCHH
Confidence 22221 1 22368999999999999999985 4699999999999998742 111 1 234556
Q ss_pred HHHHHHHHH
Q 011791 384 EIDGQYNEM 392 (477)
Q Consensus 384 ~l~~~~~~~ 392 (477)
++++.|+.+
T Consensus 155 e~l~~l~a~ 163 (199)
T PTZ00253 155 EVLRLLEAF 163 (199)
T ss_pred HHHHHHHhh
Confidence 666666543
|
|
| >cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-14 Score=118.49 Aligned_cols=71 Identities=11% Similarity=0.306 Sum_probs=63.5
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
++++||+|||+||+||+.+.|.|.++++++++. +.++.|++|... +++..|+|.
T Consensus 14 ~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~---v~f~kVDvD~~~-----------------------~la~~~~V~ 67 (114)
T cd02954 14 EKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF---AVIYLVDIDEVP-----------------------DFNKMYELY 67 (114)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHccCc---eEEEEEECCCCH-----------------------HHHHHcCCC
Confidence 689999999999999999999999999998754 677778777654 689999999
Q ss_pred CcceEEEECCCCcEEEec
Q 011791 345 GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~~ 362 (477)
++||++++ ++|+.+.+.
T Consensus 68 ~iPTf~~f-k~G~~v~~~ 84 (114)
T cd02954 68 DPPTVMFF-FRNKHMKID 84 (114)
T ss_pred CCCEEEEE-ECCEEEEEE
Confidence 99999999 899999885
|
It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing. |
| >PRK13190 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.6e-15 Score=134.64 Aligned_cols=118 Identities=24% Similarity=0.307 Sum_probs=93.8
Q ss_pred ccCcCCCcee-cCCCCeEecCCCCCCEEEE-EEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHH--HHHH
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDLEGKTIGL-YFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEE--SFKR 157 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l~gk~vll-~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~--~~~~ 157 (477)
+|..+|+|.+ +.+| .+++++++||+++| +||++||++|..+++.|.+++++++++| ++||+||+|+... +|.+
T Consensus 4 vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~--~~vi~vS~D~~~~~~~w~~ 80 (202)
T PRK13190 4 LGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLG--VELVGLSVDSIYSHIAWLR 80 (202)
T ss_pred CCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHH
Confidence 6889999965 5666 79999999997766 6899999999999999999999999887 9999999997533 3433
Q ss_pred h-hcCCC-CccccCCchhHHHHHHHcCcc------cCCeEEEECCCCCccccc
Q 011791 158 D-LGSMP-WLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 158 ~-~~~~~-~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~ 202 (477)
. .+... .+.+|...+....+++.||+. .+|+++|||++|+|.+..
T Consensus 81 ~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~ 133 (202)
T PRK13190 81 DIEERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMI 133 (202)
T ss_pred hHHHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEE
Confidence 2 22222 134555556667899999984 589999999999998765
|
|
| >PRK13599 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-14 Score=134.98 Aligned_cols=121 Identities=12% Similarity=0.102 Sum_probs=98.8
Q ss_pred hccCcCCCcee-cCCCCeEecCCCCCCEE-EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCC--HHHHH
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSDLEGKTI-GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE--EESFK 156 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~l~gk~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~--~~~~~ 156 (477)
.+|..+|+|.+ +.+|+.+.+++++||++ |++||++||++|..+++.|++++++|+++| ++||+||+|+. ...|.
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g--v~vigIS~D~~~~~~~w~ 80 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN--TELIGLSVDQVFSHIKWV 80 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHH
Confidence 68999999965 78899888889999975 678999999999999999999999999988 99999999974 34566
Q ss_pred HhhcCC--CCccccCCchhHHHHHHHcCcc-------cCCeEEEECCCCCccccch
Q 011791 157 RDLGSM--PWLALPFKDKSREKLARYFELS-------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 157 ~~~~~~--~~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~i~~~~~ 203 (477)
++++++ .-+.+|...+....+++.||+. .+|+++|||++|+|+....
T Consensus 81 ~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~ 136 (215)
T PRK13599 81 EWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMY 136 (215)
T ss_pred HhHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEE
Confidence 666532 1234555555566789999983 5899999999999988753
|
|
| >cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-14 Score=126.54 Aligned_cols=114 Identities=24% Similarity=0.402 Sum_probs=89.9
Q ss_pred CCCcee-cCCCCeEecCCCC-CC-EEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCC
Q 011791 86 SRDFVI-SSDGRKISVSDLE-GK-TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSM 162 (477)
Q Consensus 86 ~p~fl~-~~~g~~v~ls~l~-gk-~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~ 162 (477)
+|+|.+ +.+|+.++++++. +| +++++||++||++|+.++|.|+++++++++.| ++||+|+.|.... ...+.+..
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~--v~vv~V~~~~~~~-~~~~~~~~ 78 (149)
T cd02970 2 APDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALG--VELVAVGPESPEK-LEAFDKGK 78 (149)
T ss_pred CCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcC--eEEEEEeCCCHHH-HHHHHHhc
Confidence 678854 8899999999875 45 55666679999999999999999999999877 9999999986543 33455443
Q ss_pred CCccccCCchhHHHHHHHcCcc-----------------------------cCCeEEEECCCCCccccch
Q 011791 163 PWLALPFKDKSREKLARYFELS-----------------------------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~v~-----------------------------~~P~~~lid~~G~i~~~~~ 203 (477)
. +.+|...+....+.+.||+. .+|+.+|||++|+|++...
T Consensus 79 ~-~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~ 147 (149)
T cd02970 79 F-LPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHV 147 (149)
T ss_pred C-CCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEec
Confidence 3 34555555567788999984 7999999999999987653
|
Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins. |
| >TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626 | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-14 Score=130.48 Aligned_cols=115 Identities=13% Similarity=0.153 Sum_probs=85.6
Q ss_pred ccCcCCCceec-----------CCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEE------E
Q 011791 82 LTSHSRDFVIS-----------SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEI------V 144 (477)
Q Consensus 82 ~g~~~p~fl~~-----------~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~v------v 144 (477)
+|+++|...+. .+.++++.++++||+++|+|||+||+||+.+.|.|.++ +++| |.+ +
T Consensus 25 ~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~--~~~~~y~~t~ 98 (184)
T TIGR01626 25 VEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KAAK--FPPVKYQTTT 98 (184)
T ss_pred cCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HHcC--CCcccccceE
Confidence 56677665321 23467778889999999999999999999999999988 4445 777 8
Q ss_pred EEEcCCCHHHHHHhhc--------CCCCccccCCchhHHHHHHHcCcccCCeE-EEECCCCCccccchh
Q 011791 145 LISLDDEEESFKRDLG--------SMPWLALPFKDKSREKLARYFELSTLPTL-VIIGPDGKTLHSNVA 204 (477)
Q Consensus 145 ~is~D~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~v~~~P~~-~lid~~G~i~~~~~~ 204 (477)
.|+.|++......+++ ..||..+ ..+..+.+...||+.++|+. +|||++|+++.....
T Consensus 99 ~IN~dd~~~~~~~fVk~fie~~~~~~P~~~v--llD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G 165 (184)
T TIGR01626 99 IINADDAIVGTGMFVKSSAKKGKKENPWSQV--VLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEG 165 (184)
T ss_pred EEECccchhhHHHHHHHHHHHhcccCCcceE--EECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeC
Confidence 9999986544333333 3455433 33335567889999999988 899999999988753
|
This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ. |
| >PRK13189 peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.8e-14 Score=131.06 Aligned_cols=118 Identities=18% Similarity=0.314 Sum_probs=93.4
Q ss_pred hccCCCccee-ccCCCceeccc-CCCCEEE-EEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChh--HHH
Q 011791 242 LVSGDLDFVV-GKNGGKVPVSD-LAGKTIL-LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT--SFD 316 (477)
Q Consensus 242 ~~~~~p~f~l-~~~g~~~~l~~-~~gk~vl-l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~--~~~ 316 (477)
++...|+|.+ +..| .+.+++ ++||+++ ++||++||+.|..+++.|++++++|+++ +++|++||+|.... +|.
T Consensus 11 vG~~aPdF~~~~~~g-~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~--~v~VigvS~D~~~~h~aw~ 87 (222)
T PRK13189 11 IGDKFPEFEVKTTHG-PIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL--NTELIGLSIDQVFSHIKWV 87 (222)
T ss_pred CCCcCCCcEeEcCCC-CEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEECCCHHHHHHHH
Confidence 4566799999 6777 477776 5999655 5778999999999999999999999876 79999999996432 233
Q ss_pred HHHhc-CC-CceeccCcchhHHHHHhcCCC-------CcceEEEECCCCcEEEec
Q 011791 317 EFFKG-MP-WLALPFGDARKASLSRKFKVS-------GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 317 ~~~~~-~~-~~~~p~~~d~~~~l~~~~~v~-------~~Pt~~lid~~G~iv~~~ 362 (477)
+.+.+ .+ -+.||++.|.+..+++.||+. .+|++||||++|+|+...
T Consensus 88 ~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~ 142 (222)
T PRK13189 88 EWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAIL 142 (222)
T ss_pred HhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEE
Confidence 32222 22 267899999999999999985 579999999999998774
|
|
| >PHA02278 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.3e-14 Score=115.33 Aligned_cols=76 Identities=12% Similarity=0.270 Sum_probs=62.9
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
++++++|+|||+||+||+.+.|.+.++++++.. ...++.|++|.+.. + ...+++.|+|
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~---~~~~~~vdvd~~~~------------------d-~~~l~~~~~I 70 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI---KKPILTLNLDAEDV------------------D-REKAVKLFDI 70 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC---CceEEEEECCcccc------------------c-cHHHHHHCCC
Confidence 478999999999999999999999999877543 36788888886520 0 1358999999
Q ss_pred CCcceEEEECCCCcEEEec
Q 011791 344 SGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~~ 362 (477)
.++||++++ ++|+.+.+.
T Consensus 71 ~~iPT~i~f-k~G~~v~~~ 88 (103)
T PHA02278 71 MSTPVLIGY-KDGQLVKKY 88 (103)
T ss_pred ccccEEEEE-ECCEEEEEE
Confidence 999999999 789999873
|
|
| >cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.7e-14 Score=115.57 Aligned_cols=71 Identities=13% Similarity=0.324 Sum_probs=61.0
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+++++|+|||+||++|+.+.|.+.++++++++. .+.++.++.| .. .+++.|+|
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~--~~~~~~vd~d-~~-----------------------~~~~~~~v 69 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDD--LLHFATAEAD-TI-----------------------DTLKRYRG 69 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCC--cEEEEEEeCC-CH-----------------------HHHHHcCC
Confidence 3789999999999999999999999999988743 4677777777 32 46899999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
+++||++++ ++|+.+.+
T Consensus 70 ~~~Pt~~~~-~~g~~~~~ 86 (102)
T cd02948 70 KCEPTFLFY-KNGELVAV 86 (102)
T ss_pred CcCcEEEEE-ECCEEEEE
Confidence 999999999 79999887
|
Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which |
| >PRK10606 btuE putative glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.5e-14 Score=125.38 Aligned_cols=81 Identities=16% Similarity=0.214 Sum_probs=70.1
Q ss_pred CCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC-------CChhHHHH
Q 011791 246 DLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQTSFDE 317 (477)
Q Consensus 246 ~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d-------~~~~~~~~ 317 (477)
.++|.+ +++|+.+++++++||++||.|||+||++|. ..+.|++++++|+++ +++|++++++ .+.+++++
T Consensus 5 ~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~--gl~Vlg~p~nqf~~qe~~~~~ei~~ 81 (183)
T PRK10606 5 ILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQ--GFVVLGFPCNQFLGQEPGSDEEIKT 81 (183)
T ss_pred ccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhC--CeEEEEeeccccccCCCCCHHHHHH
Confidence 467888 999999999999999999999999999996 599999999999876 7999999985 35678899
Q ss_pred HHh-cCCCceeccC
Q 011791 318 FFK-GMPWLALPFG 330 (477)
Q Consensus 318 ~~~-~~~~~~~p~~ 330 (477)
|++ +++ +.||+.
T Consensus 82 f~~~~~g-~~Fpv~ 94 (183)
T PRK10606 82 YCRTTWG-VTFPMF 94 (183)
T ss_pred HHHHccC-CCceeE
Confidence 997 555 567766
|
|
| >COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.6e-14 Score=121.39 Aligned_cols=118 Identities=24% Similarity=0.313 Sum_probs=99.9
Q ss_pred hccCcCCCce-ecCCCCeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHh
Q 011791 81 VLTSHSRDFV-ISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 158 (477)
Q Consensus 81 ~~g~~~p~fl-~~~~g~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~ 158 (477)
-+|.++|||. .+.+|+.++|++++||+|+|||+ ..++|.|..++-.+++.+.++.+.| .+|++||.|+ .+..+++
T Consensus 5 ~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~--a~V~GIS~Ds-~~~~~~F 81 (157)
T COG1225 5 KVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG--AVVLGISPDS-PKSHKKF 81 (157)
T ss_pred CCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC--CEEEEEeCCC-HHHHHHH
Confidence 3689999995 59999999999999999999998 5689999999999999999999988 9999999994 4556666
Q ss_pred hcCCCCccccCCchhHHHHHHHcCcc------------cCCeEEEECCCCCccccc
Q 011791 159 LGSMPWLALPFKDKSREKLARYFELS------------TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~i~~~~ 202 (477)
..+.. +.++...+...++++.||+. ..++++|||++|+|.+.-
T Consensus 82 ~~k~~-L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~ 136 (157)
T COG1225 82 AEKHG-LTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW 136 (157)
T ss_pred HHHhC-CCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe
Confidence 66655 45677777778899999972 358999999999988754
|
|
| >PRK15000 peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.9e-14 Score=130.19 Aligned_cols=122 Identities=18% Similarity=0.276 Sum_probs=93.2
Q ss_pred hhccCcCCCcee-cC--CCCeEe---cCCC-CCCEEEEEEecC-CCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCC
Q 011791 80 SVLTSHSRDFVI-SS--DGRKIS---VSDL-EGKTIGLYFSMS-SYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE 151 (477)
Q Consensus 80 ~~~g~~~p~fl~-~~--~g~~v~---ls~l-~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~ 151 (477)
..+|..+|+|.+ +. +|+.++ ++++ +||+++|+||+. ||++|..+++.|++++++++++| ++||+||.|+.
T Consensus 2 ~~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g--~~vigvS~D~~ 79 (200)
T PRK15000 2 VLVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRG--VEVVGVSFDSE 79 (200)
T ss_pred CcCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCH
Confidence 357899999965 33 456444 4444 799999999995 99999999999999999999888 99999999965
Q ss_pred H--HHHHHhh-cCCC--CccccCCchhHHHHHHHcCcc------cCCeEEEECCCCCccccch
Q 011791 152 E--ESFKRDL-GSMP--WLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 152 ~--~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~ 203 (477)
. ..|.+.+ +... -+.+|...+....+++.||+. .+|+.+|||++|+|++...
T Consensus 80 ~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~ 142 (200)
T PRK15000 80 FVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVV 142 (200)
T ss_pred HHHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEe
Confidence 3 3444432 2111 134555555567899999997 6999999999999988654
|
|
| >KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.9e-14 Score=119.32 Aligned_cols=70 Identities=20% Similarity=0.589 Sum_probs=64.0
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+.||+|+|||+||+||+.+.|.|+++..+|+++ +.+..|++|... +++..|+|.
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~---~k~~kvdtD~~~-----------------------ela~~Y~I~ 114 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK---FKLYKVDTDEHP-----------------------ELAEDYEIS 114 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe---EEEEEEcccccc-----------------------chHhhccee
Confidence 789999999999999999999999999999776 888888888654 689999999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++||+++| ++|+.+.+
T Consensus 115 avPtvlvf-knGe~~d~ 130 (150)
T KOG0910|consen 115 AVPTVLVF-KNGEKVDR 130 (150)
T ss_pred eeeEEEEE-ECCEEeee
Confidence 99999999 79999876
|
|
| >TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.9e-14 Score=122.34 Aligned_cols=86 Identities=20% Similarity=0.274 Sum_probs=62.6
Q ss_pred CCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchh
Q 011791 255 GGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARK 334 (477)
Q Consensus 255 g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~ 334 (477)
|+++++ +++.||+|||+||++|++++|.|++++++++ +.|++|++|.... ..+|...+..
T Consensus 44 G~~~~l----~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-----~~Vi~Vs~d~~~~-----------~~fp~~~~~~ 103 (153)
T TIGR02738 44 GRHANQ----DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG-----LPVYAFSLDGQGL-----------TGFPDPLPAT 103 (153)
T ss_pred chhhhc----CCCEEEEEECCCChhHHHHHHHHHHHHHHcC-----CcEEEEEeCCCcc-----------cccccccCCc
Confidence 555555 4556999999999999999999999998873 6799999886431 1233332212
Q ss_pred HH-HHHhc---CCCCcceEEEECCCCcEEE
Q 011791 335 AS-LSRKF---KVSGIPMLVAIGPSGRTIT 360 (477)
Q Consensus 335 ~~-l~~~~---~v~~~Pt~~lid~~G~iv~ 360 (477)
.. +...| ++.++|+++|||++|+++.
T Consensus 104 ~~~~~~~~~~~~v~~iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 104 PEVMQTFFPNPRPVVTPATFLVNVNTRKAY 133 (153)
T ss_pred hHHHHHHhccCCCCCCCeEEEEeCCCCEEE
Confidence 22 33455 8899999999999988654
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase. |
| >PTZ00137 2-Cys peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.4e-14 Score=131.71 Aligned_cols=122 Identities=16% Similarity=0.184 Sum_probs=95.2
Q ss_pred hhccCcCCCcee-c-CCC--CeEecCCC-CCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCC--
Q 011791 80 SVLTSHSRDFVI-S-SDG--RKISVSDL-EGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE-- 151 (477)
Q Consensus 80 ~~~g~~~p~fl~-~-~~g--~~v~ls~l-~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~-- 151 (477)
..+|..+|+|.+ + .+| +.++++++ +||+++|+|| +.||++|..+++.|++++++++++| ++|++||.|+.
T Consensus 68 ~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g--v~VigIS~Ds~~~ 145 (261)
T PTZ00137 68 SLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG--VKVLGVSVDSPFS 145 (261)
T ss_pred ccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHH
Confidence 478999999964 3 344 56899998 8988888877 8999999999999999999999988 99999999973
Q ss_pred HHHHHHh-hcCC--CCccccCCchhHHHHHHHcCcc-----cCCeEEEECCCCCccccch
Q 011791 152 EESFKRD-LGSM--PWLALPFKDKSREKLARYFELS-----TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 152 ~~~~~~~-~~~~--~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~i~~~~~ 203 (477)
...|.+. .++. .-+.+|...+....+++.||+. .+|+.+|||++|+|++...
T Consensus 146 h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~ 205 (261)
T PTZ00137 146 HKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAV 205 (261)
T ss_pred HHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEE
Confidence 2344442 2221 1234455555567899999985 5899999999999998764
|
|
| >PRK13728 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5e-14 Score=125.27 Aligned_cols=95 Identities=20% Similarity=0.371 Sum_probs=75.1
Q ss_pred cCCCceecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCC
Q 011791 85 HSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPW 164 (477)
Q Consensus 85 ~~p~fl~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~ 164 (477)
+.++|-+ .+|+.+++++++ +|+||++||++|+.++|.|++++++| | ++|++|++|.+.+
T Consensus 54 ~~~~f~l-~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---g--~~Vi~Vs~D~~~~----------- 112 (181)
T PRK13728 54 APRWFRL-SNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---G--FSVFPYTLDGQGD----------- 112 (181)
T ss_pred CCCccCC-CCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc---C--CEEEEEEeCCCCC-----------
Confidence 4555533 599999999997 77799999999999999999999998 4 8999999986642
Q ss_pred ccccCCch-hHHHHHHHcCc--ccCCeEEEECCCCCccc
Q 011791 165 LALPFKDK-SREKLARYFEL--STLPTLVIIGPDGKTLH 200 (477)
Q Consensus 165 ~~~~~~~~-~~~~l~~~~~v--~~~P~~~lid~~G~i~~ 200 (477)
..+|...+ ....+.+.|++ .++|+++|||++|+++.
T Consensus 113 ~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 113 TAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred CCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 23333322 23457778995 69999999999999864
|
|
| >cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-13 Score=113.78 Aligned_cols=72 Identities=18% Similarity=0.439 Sum_probs=62.2
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.|++++|+|||+||++|+.+.|.+.++++++++. ++.+..|++|... .+++.|+|
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~d~~~-----------------------~l~~~~~V 77 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL--GVGIATVNAGHER-----------------------RLARKLGA 77 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc--CceEEEEeccccH-----------------------HHHHHcCC
Confidence 5899999999999999999999999999999753 4777777766443 57899999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
+++||++++ ++|+++.+
T Consensus 78 ~~~Pt~~i~-~~g~~~~~ 94 (111)
T cd02963 78 HSVPAIVGI-INGQVTFY 94 (111)
T ss_pred ccCCEEEEE-ECCEEEEE
Confidence 999999999 68988776
|
DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. |
| >PRK13191 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.8e-14 Score=129.13 Aligned_cols=121 Identities=13% Similarity=0.186 Sum_probs=94.6
Q ss_pred hhccCcCCCcee-cCCCCeEec-CCCCCCEEEE-EEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHH--H
Q 011791 80 SVLTSHSRDFVI-SSDGRKISV-SDLEGKTIGL-YFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEE--S 154 (477)
Q Consensus 80 ~~~g~~~p~fl~-~~~g~~v~l-s~l~gk~vll-~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~--~ 154 (477)
..+|..+|+|.+ +.+|+ +.+ ++++||+++| +||++||++|..+++.|.+++++++++| ++|++||+|+... .
T Consensus 7 ~~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g--~~VigvS~Ds~~~h~a 83 (215)
T PRK13191 7 PLIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLN--TELIGLSVDSNISHIE 83 (215)
T ss_pred ccCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHH
Confidence 357999999965 67786 555 5589997665 8899999999999999999999999988 9999999997643 4
Q ss_pred HHHhhcCC-C-CccccCCchhHHHHHHHcCcc-------cCCeEEEECCCCCccccch
Q 011791 155 FKRDLGSM-P-WLALPFKDKSREKLARYFELS-------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 155 ~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~i~~~~~ 203 (477)
|.+.+++. . -+.+|...+....+++.||+. .+|+.+|||++|+|.+...
T Consensus 84 w~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~ 141 (215)
T PRK13191 84 WVMWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILY 141 (215)
T ss_pred HHhhHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEe
Confidence 65555421 1 133455555567899999973 3799999999999988654
|
|
| >cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44 | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-13 Score=112.95 Aligned_cols=70 Identities=21% Similarity=0.370 Sum_probs=56.6
Q ss_pred ccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHh
Q 011791 261 SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 340 (477)
Q Consensus 261 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 340 (477)
++++||+++|+|||+||++|+.+.|.|.++++++++ +.++.|+.+. . ...+++.
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~~~-~---------------------~~~l~~~ 67 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEESS-I---------------------KPSLLSR 67 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEECCC-C---------------------CHHHHHh
Confidence 346799999999999999999999999999998853 5566664441 1 2368999
Q ss_pred cCCCCcceEEEECCCCc
Q 011791 341 FKVSGIPMLVAIGPSGR 357 (477)
Q Consensus 341 ~~v~~~Pt~~lid~~G~ 357 (477)
|+|+++||+++++ +|.
T Consensus 68 ~~V~~~PT~~lf~-~g~ 83 (100)
T cd02999 68 YGVVGFPTILLFN-STP 83 (100)
T ss_pred cCCeecCEEEEEc-CCc
Confidence 9999999999995 553
|
CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. |
| >cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.6e-13 Score=108.97 Aligned_cols=71 Identities=17% Similarity=0.392 Sum_probs=60.7
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
+++++||+|||+||++|+++.|.++++++.+++. +.++.|+++... .+++.|+|
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~-----------------------~l~~~~~i 64 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ---FVLAKVNCDAQP-----------------------QIAQQFGV 64 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc---EEEEEEeccCCH-----------------------HHHHHcCC
Confidence 4789999999999999999999999999998653 666767666543 68999999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
.++|++++++ +|+++.+
T Consensus 65 ~~~Pt~~~~~-~g~~~~~ 81 (96)
T cd02956 65 QALPTVYLFA-AGQPVDG 81 (96)
T ss_pred CCCCEEEEEe-CCEEeee
Confidence 9999999995 8988765
|
Its gene has been sequenced from several gammaproteobacteria and actinobacteria. |
| >PTZ00253 tryparedoxin peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-13 Score=125.06 Aligned_cols=121 Identities=19% Similarity=0.260 Sum_probs=96.0
Q ss_pred hccCcCCCcee-----cCCCCeEecCCCCCCEEEEEEec-CCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHH
Q 011791 81 VLTSHSRDFVI-----SSDGRKISVSDLEGKTIGLYFSM-SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEES 154 (477)
Q Consensus 81 ~~g~~~p~fl~-----~~~g~~v~ls~l~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~ 154 (477)
.+|.++|+|.. +.+|+.+++++++||+++|+||+ .||++|..+++.|.+++++++++| ++||+||.|.....
T Consensus 7 ~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g--~~vv~IS~d~~~~~ 84 (199)
T PTZ00253 7 KINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELN--CEVLACSMDSEYAH 84 (199)
T ss_pred ccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEeCCCHHHH
Confidence 46899999952 45678999999999999999995 789999999999999999999988 99999999976432
Q ss_pred --HHHhhcC---CCCccccCCchhHHHHHHHcCcc------cCCeEEEECCCCCccccch
Q 011791 155 --FKRDLGS---MPWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 155 --~~~~~~~---~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~ 203 (477)
|...... ..-+.+|...+...++++.||+. .+|+.+|||++|+++....
T Consensus 85 ~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~ 144 (199)
T PTZ00253 85 LQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITV 144 (199)
T ss_pred HHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEe
Confidence 2211111 11245666666778899999984 3689999999999887653
|
|
| >cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.4e-13 Score=110.20 Aligned_cols=81 Identities=21% Similarity=0.375 Sum_probs=64.6
Q ss_pred CCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcch
Q 011791 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDAR 333 (477)
Q Consensus 254 ~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~ 333 (477)
+++.+......+++++|+|||+||++|+++.|.+.++++++++. +.+..|++|...
T Consensus 7 ~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~---~~~~~vd~~~~~--------------------- 62 (101)
T cd03003 7 DRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV---IRIGAVNCGDDR--------------------- 62 (101)
T ss_pred CHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc---eEEEEEeCCccH---------------------
Confidence 33333333334789999999999999999999999999999753 777777777543
Q ss_pred hHHHHHhcCCCCcceEEEECCCCcEEEe
Q 011791 334 KASLSRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 334 ~~~l~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
.+++.|+|+++||++++ ++|+.+.+
T Consensus 63 --~~~~~~~v~~~Pt~~~~-~~g~~~~~ 87 (101)
T cd03003 63 --MLCRSQGVNSYPSLYVF-PSGMNPEK 87 (101)
T ss_pred --HHHHHcCCCccCEEEEE-cCCCCccc
Confidence 58999999999999999 78876544
|
This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. |
| >KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.5e-13 Score=110.92 Aligned_cols=69 Identities=25% Similarity=0.583 Sum_probs=60.7
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+|+++|+|+|+||+||+.+.|.+.+++.+|.+ +.++.+++|. . .++++.++|+
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdvde-~----------------------~~~~~~~~V~ 73 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDVDE-L----------------------EEVAKEFNVK 73 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEeccc-C----------------------HhHHHhcCce
Confidence 69999999999999999999999999999863 6677777775 2 3689999999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++||++++ ++|+.+.+
T Consensus 74 ~~PTf~f~-k~g~~~~~ 89 (106)
T KOG0907|consen 74 AMPTFVFY-KGGEEVDE 89 (106)
T ss_pred EeeEEEEE-ECCEEEEE
Confidence 99999999 89998887
|
|
| >cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.5e-13 Score=125.52 Aligned_cols=119 Identities=15% Similarity=0.202 Sum_probs=91.0
Q ss_pred ccCcCCCcee-cCCCCeEecCCCCC-CEE-EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCH--HHHH
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDLEG-KTI-GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE--ESFK 156 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l~g-k~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~--~~~~ 156 (477)
+|..+|+|.+ +.+| .+++++++| |++ +++||++||+.|..+++.|++++++++++| ++|++||+|... .+|.
T Consensus 1 vG~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~g--v~vigvS~D~~~~~~~~~ 77 (203)
T cd03016 1 LGDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRN--VKLIGLSVDSVESHIKWI 77 (203)
T ss_pred CcCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHHHHH
Confidence 4788999965 6666 589999998 654 558999999999999999999999999888 999999999643 2343
Q ss_pred HhhcCC--CCccccCCchhHHHHHHHcCcc----c----CCeEEEECCCCCccccch
Q 011791 157 RDLGSM--PWLALPFKDKSREKLARYFELS----T----LPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 157 ~~~~~~--~~~~~~~~~~~~~~l~~~~~v~----~----~P~~~lid~~G~i~~~~~ 203 (477)
+.+... .-+.+|...+....+++.||+. + .|+.+|||++|+|+....
T Consensus 78 ~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~ 134 (203)
T cd03016 78 EDIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILY 134 (203)
T ss_pred hhHHHhcCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEe
Confidence 333221 1234455555667899999985 2 457999999999987754
|
They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an |
| >cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-12 Score=111.79 Aligned_cols=86 Identities=27% Similarity=0.492 Sum_probs=65.0
Q ss_pred CC-CEEEEEEeCCCChhhHhHhHHHH---HHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHH
Q 011791 264 AG-KTILLYFSAHWCPPCRAFLPKLI---DAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 339 (477)
Q Consensus 264 ~g-k~vll~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~ 339 (477)
.| |+++|+|||+||++|+.+.|.+. ++.+.+++ ++.++.|++|.+.... . ++........+.+
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~i~~d~~~~~~-~---------~~~~~~~~~~l~~ 78 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA---HFVVVYINIDGDKEVT-D---------FDGEALSEKELAR 78 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh---heEEEEEEccCCceee-c---------cCCCCccHHHHHH
Confidence 37 99999999999999999999885 55566654 4788888887653211 1 1111123567899
Q ss_pred hcCCCCcceEEEECCC-CcEEEec
Q 011791 340 KFKVSGIPMLVAIGPS-GRTITKE 362 (477)
Q Consensus 340 ~~~v~~~Pt~~lid~~-G~iv~~~ 362 (477)
.|+|.++||+++++++ |+++.+.
T Consensus 79 ~~~v~~~Pt~~~~~~~gg~~~~~~ 102 (125)
T cd02951 79 KYRVRFTPTVIFLDPEGGKEIARL 102 (125)
T ss_pred HcCCccccEEEEEcCCCCceeEEe
Confidence 9999999999999999 8998873
|
Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation. |
| >PRK13189 peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.4e-13 Score=124.60 Aligned_cols=120 Identities=15% Similarity=0.240 Sum_probs=92.3
Q ss_pred hccCcCCCcee-cCCCCeEecCC-CCCCEE-EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHH--HH
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSD-LEGKTI-GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEE--SF 155 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~-l~gk~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~--~~ 155 (477)
.+|..+|+|.+ +.+|+ +++++ ++||++ |++||++||++|..+++.|++++++++++| ++||+||+|+... +|
T Consensus 10 ~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~--v~VigvS~D~~~~h~aw 86 (222)
T PRK13189 10 LIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELN--TELIGLSIDQVFSHIKW 86 (222)
T ss_pred cCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHHHH
Confidence 47999999965 66775 77776 599965 557899999999999999999999999887 9999999997543 34
Q ss_pred HHhhcC-CC-CccccCCchhHHHHHHHcCcc-------cCCeEEEECCCCCccccch
Q 011791 156 KRDLGS-MP-WLALPFKDKSREKLARYFELS-------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 156 ~~~~~~-~~-~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~i~~~~~ 203 (477)
.+.+.+ .. -+.+|...+....+++.||+. .+|+++|||++|+|++...
T Consensus 87 ~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~ 143 (222)
T PRK13189 87 VEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILY 143 (222)
T ss_pred HHhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEe
Confidence 443322 11 134455555567899999975 4799999999999987654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5e-13 Score=125.17 Aligned_cols=70 Identities=24% Similarity=0.555 Sum_probs=63.4
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
-+||||+||+|||++|+.++|.|.++..+|+++ +.+..|++|..+ .++..|||+
T Consensus 43 ~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~---f~LakvN~D~~p-----------------------~vAaqfgiq 96 (304)
T COG3118 43 EVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK---FKLAKVNCDAEP-----------------------MVAAQFGVQ 96 (304)
T ss_pred CCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc---eEEEEecCCcch-----------------------hHHHHhCcC
Confidence 579999999999999999999999999999886 777777777655 689999999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++||+|+| ++|+.|.-
T Consensus 97 sIPtV~af-~dGqpVdg 112 (304)
T COG3118 97 SIPTVYAF-KDGQPVDG 112 (304)
T ss_pred cCCeEEEe-eCCcCccc
Confidence 99999999 89999876
|
|
| >cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.3e-13 Score=109.28 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=58.9
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHH-HhcC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLS-RKFK 342 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~-~~~~ 342 (477)
.++++||.|||+||++|+.+.|.+.++++++++. +.++.|++|.+. .++ +.|+
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~---v~~~~Vd~d~~~-----------------------~l~~~~~~ 81 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ---VLFVAINCWWPQ-----------------------GKCRKQKH 81 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCCh-----------------------HHHHHhcC
Confidence 4789999999999999999999999999999754 667777666443 466 5899
Q ss_pred CCCcceEEEECCCCcEEEe
Q 011791 343 VSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 343 v~~~Pt~~lid~~G~iv~~ 361 (477)
|+++||++++ ++|+...+
T Consensus 82 I~~~PTl~lf-~~g~~~~~ 99 (113)
T cd03006 82 FFYFPVIHLY-YRSRGPIE 99 (113)
T ss_pred CcccCEEEEE-ECCccceE
Confidence 9999999999 78875443
|
ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. |
| >PRK09381 trxA thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-12 Score=107.79 Aligned_cols=70 Identities=27% Similarity=0.581 Sum_probs=61.9
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|+||++||++|+.+.|.++++++++.++ +.++.+++|... .+.+.|+|+
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~v~ 74 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNP-----------------------GTAPKYGIR 74 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC---cEEEEEECCCCh-----------------------hHHHhCCCC
Confidence 789999999999999999999999999998753 788888887554 468889999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++|+++++ ++|+++.+
T Consensus 75 ~~Pt~~~~-~~G~~~~~ 90 (109)
T PRK09381 75 GIPTLLLF-KNGEVAAT 90 (109)
T ss_pred cCCEEEEE-eCCeEEEE
Confidence 99999999 79998876
|
|
| >cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-12 Score=112.88 Aligned_cols=77 Identities=14% Similarity=0.298 Sum_probs=65.5
Q ss_pred CCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 011791 103 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 182 (477)
Q Consensus 103 l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (477)
.+||+++|+|||+||++|+.+.|.|.++++.+.+. +.++.|.+|.+.. ..+++.|+
T Consensus 18 ~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~---~~~v~v~vd~~~~---------------------~~~~~~~~ 73 (142)
T cd02950 18 SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ---VNFVMLNVDNPKW---------------------LPEIDRYR 73 (142)
T ss_pred hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC---eeEEEEEcCCccc---------------------HHHHHHcC
Confidence 36899999999999999999999999999998754 7888888875421 23678999
Q ss_pred cccCCeEEEECCCCCccccch
Q 011791 183 LSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 183 v~~~P~~~lid~~G~i~~~~~ 203 (477)
|.++|++++++++|+++.+..
T Consensus 74 V~~iPt~v~~~~~G~~v~~~~ 94 (142)
T cd02950 74 VDGIPHFVFLDREGNEEGQSI 94 (142)
T ss_pred CCCCCEEEEECCCCCEEEEEe
Confidence 999999999999999887654
|
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. |
| >TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.1e-13 Score=115.61 Aligned_cols=87 Identities=21% Similarity=0.372 Sum_probs=62.8
Q ss_pred CCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhH
Q 011791 95 GRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSR 174 (477)
Q Consensus 95 g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (477)
|+.+++++ +.+|+|||+||+||+.++|.|+++++++ + +.|++|++|.... ..+| ..++.. .
T Consensus 44 G~~~~l~~----~~lvnFWAsWCppCr~e~P~L~~l~~~~---~--~~Vi~Vs~d~~~~------~~fp-~~~~~~---~ 104 (153)
T TIGR02738 44 GRHANQDD----YALVFFYQSTCPYCHQFAPVLKRFSQQF---G--LPVYAFSLDGQGL------TGFP-DPLPAT---P 104 (153)
T ss_pred chhhhcCC----CEEEEEECCCChhHHHHHHHHHHHHHHc---C--CcEEEEEeCCCcc------cccc-cccCCc---h
Confidence 56666654 4599999999999999999999999987 3 7899999986531 1222 111111 1
Q ss_pred HHHHHHc---CcccCCeEEEECCCCCccc
Q 011791 175 EKLARYF---ELSTLPTLVIIGPDGKTLH 200 (477)
Q Consensus 175 ~~l~~~~---~v~~~P~~~lid~~G~i~~ 200 (477)
..+...| ++.++|++++||++|+++.
T Consensus 105 ~~~~~~~~~~~v~~iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 105 EVMQTFFPNPRPVVTPATFLVNVNTRKAY 133 (153)
T ss_pred HHHHHHhccCCCCCCCeEEEEeCCCCEEE
Confidence 2233455 8899999999999988644
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase. |
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.3e-12 Score=130.57 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=57.6
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+++.++|+|||+||++|+.+.|.+.++++.+++.+.++.+..|..+.. ..+++.|++
T Consensus 48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~-----------------------~~l~~~~~i 104 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE-----------------------MELAQEFGV 104 (477)
T ss_pred cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC-----------------------HHHHHhcCC
Confidence 578999999999999999999999999998876653455555544432 458899999
Q ss_pred ccCCeEEEECCCCCc
Q 011791 184 STLPTLVIIGPDGKT 198 (477)
Q Consensus 184 ~~~P~~~lid~~G~i 198 (477)
.++|++++++.++.+
T Consensus 105 ~~~Pt~~~~~~g~~~ 119 (477)
T PTZ00102 105 RGYPTIKFFNKGNPV 119 (477)
T ss_pred CcccEEEEEECCceE
Confidence 999999999866544
|
|
| >cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.6e-12 Score=103.60 Aligned_cols=71 Identities=20% Similarity=0.389 Sum_probs=56.8
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
++++++|+|||+||++|+.+.|.|+++++++++.+.++.+..++++.. ..+++.|+|
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~-----------------------~~~~~~~~I 70 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY-----------------------SSIASEFGV 70 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC-----------------------HhHHhhcCC
Confidence 467999999999999999999999999999976433466665655533 257889999
Q ss_pred CCcceEEEECCCCcE
Q 011791 344 SGIPMLVAIGPSGRT 358 (477)
Q Consensus 344 ~~~Pt~~lid~~G~i 358 (477)
.++||++++ .+|.+
T Consensus 71 ~~~Pt~~l~-~~~~~ 84 (104)
T cd03000 71 RGYPTIKLL-KGDLA 84 (104)
T ss_pred ccccEEEEE-cCCCc
Confidence 999999999 45543
|
The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. |
| >cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.5e-12 Score=104.82 Aligned_cols=76 Identities=20% Similarity=0.440 Sum_probs=61.0
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHH---HHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHh
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 340 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 340 (477)
.||++||+||++||++|+.+.+.+ .++.+.+++ ++.++.|+++.+.. ....+++.
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~-------------------~~~~~~~~ 67 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK---DVVLLRADWTKNDP-------------------EITALLKR 67 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC---CeEEEEEecCCCCH-------------------HHHHHHHH
Confidence 489999999999999999999887 567777764 47777777764321 12468889
Q ss_pred cCCCCcceEEEECC-CCcEEEe
Q 011791 341 FKVSGIPMLVAIGP-SGRTITK 361 (477)
Q Consensus 341 ~~v~~~Pt~~lid~-~G~iv~~ 361 (477)
|+|+++||++++++ +|+++.+
T Consensus 68 ~~i~~~Pti~~~~~~~g~~~~~ 89 (104)
T cd02953 68 FGVFGPPTYLFYGPGGEPEPLR 89 (104)
T ss_pred cCCCCCCEEEEECCCCCCCCcc
Confidence 99999999999988 8887766
|
It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. |
| >cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-12 Score=106.01 Aligned_cols=75 Identities=19% Similarity=0.399 Sum_probs=61.3
Q ss_pred CCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 011791 103 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 182 (477)
Q Consensus 103 l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (477)
.+||+|+|+|||+||+||+.++|.|.++++++ . + +.++.|+.|.+.+ ...+++.|+
T Consensus 13 ~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~-~--v~~~~vd~d~~~~--------------------~~~l~~~~~ 68 (103)
T cd02985 13 AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N-D--VVFLLVNGDENDS--------------------TMELCRREK 68 (103)
T ss_pred cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C-C--CEEEEEECCCChH--------------------HHHHHHHcC
Confidence 35799999999999999999999999999998 2 2 7777888775431 135788999
Q ss_pred cccCCeEEEECCCCCccccc
Q 011791 183 LSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 183 v~~~P~~~lid~~G~i~~~~ 202 (477)
|.++||++++ ++|+++.+.
T Consensus 69 V~~~Pt~~~~-~~G~~v~~~ 87 (103)
T cd02985 69 IIEVPHFLFY-KDGEKIHEE 87 (103)
T ss_pred CCcCCEEEEE-eCCeEEEEE
Confidence 9999998887 789887654
|
CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. |
| >cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX | Back alignment and domain information |
|---|
Probab=99.36 E-value=5e-12 Score=103.26 Aligned_cols=69 Identities=23% Similarity=0.515 Sum_probs=56.2
Q ss_pred CCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcC
Q 011791 263 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 342 (477)
Q Consensus 263 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 342 (477)
++|+ ++|+|||+||++|+.+.|.+.++++.++.. ++.+..++++... .+++.|+
T Consensus 15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~~~~~-----------------------~~~~~~~ 68 (101)
T cd02994 15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDL--GINVAKVDVTQEP-----------------------GLSGRFF 68 (101)
T ss_pred hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccC--CeEEEEEEccCCH-----------------------hHHHHcC
Confidence 3465 689999999999999999999999876532 4667766666433 5788999
Q ss_pred CCCcceEEEECCCCcE
Q 011791 343 VSGIPMLVAIGPSGRT 358 (477)
Q Consensus 343 v~~~Pt~~lid~~G~i 358 (477)
|+++||++++ ++|++
T Consensus 69 i~~~Pt~~~~-~~g~~ 83 (101)
T cd02994 69 VTALPTIYHA-KDGVF 83 (101)
T ss_pred CcccCEEEEe-CCCCE
Confidence 9999999998 78985
|
TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. |
| >PRK10996 thioredoxin 2; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.4e-12 Score=108.42 Aligned_cols=71 Identities=24% Similarity=0.612 Sum_probs=60.8
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+|+++|+||++||++|+.+.|.|.++++++.++ +.++.++++... .+++.|+|
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~~-----------------------~l~~~~~V 104 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK---VRFVKVNTEAER-----------------------ELSARFRI 104 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEEeCCCCH-----------------------HHHHhcCC
Confidence 4799999999999999999999999999887653 667767665443 68999999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
+++|+++++ ++|+++.+
T Consensus 105 ~~~Ptlii~-~~G~~v~~ 121 (139)
T PRK10996 105 RSIPTIMIF-KNGQVVDM 121 (139)
T ss_pred CccCEEEEE-ECCEEEEE
Confidence 999999999 58999877
|
|
| >cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.2e-12 Score=103.72 Aligned_cols=71 Identities=25% Similarity=0.557 Sum_probs=58.6
Q ss_pred EEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCc
Q 011791 267 TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGI 346 (477)
Q Consensus 267 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~ 346 (477)
+++|+|||+||++|+.+.|.+.++++++++...++.++.|+++... .+++.|+|.++
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-----------------------~~~~~~~v~~~ 74 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR-----------------------ELCSEFQVRGY 74 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh-----------------------hhHhhcCCCcC
Confidence 5999999999999999999999999999763235777766665432 57889999999
Q ss_pred ceEEEECCCCcEEEe
Q 011791 347 PMLVAIGPSGRTITK 361 (477)
Q Consensus 347 Pt~~lid~~G~iv~~ 361 (477)
||++++ ++|+.+.+
T Consensus 75 Pt~~~~-~~g~~~~~ 88 (102)
T cd03005 75 PTLLLF-KDGEKVDK 88 (102)
T ss_pred CEEEEE-eCCCeeeE
Confidence 999999 68886654
|
Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. |
| >cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.9e-12 Score=106.10 Aligned_cols=71 Identities=21% Similarity=0.438 Sum_probs=58.2
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcC---CcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhc
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERN---ESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 341 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~---~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 341 (477)
+++++|+|||+||++|+++.|.+.++++++++.. ..+.+..|++|... .+++.|
T Consensus 18 ~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~-----------------------~l~~~~ 74 (108)
T cd02996 18 AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES-----------------------DIADRY 74 (108)
T ss_pred CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH-----------------------HHHHhC
Confidence 6899999999999999999999999999886532 13556666665443 689999
Q ss_pred CCCCcceEEEECCCCcEE
Q 011791 342 KVSGIPMLVAIGPSGRTI 359 (477)
Q Consensus 342 ~v~~~Pt~~lid~~G~iv 359 (477)
+|+++||++++ ++|++.
T Consensus 75 ~v~~~Ptl~~~-~~g~~~ 91 (108)
T cd02996 75 RINKYPTLKLF-RNGMMM 91 (108)
T ss_pred CCCcCCEEEEE-eCCcCc
Confidence 99999999999 788854
|
It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. |
| >PTZ00062 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.5e-12 Score=117.34 Aligned_cols=108 Identities=12% Similarity=0.142 Sum_probs=80.6
Q ss_pred CEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCC
Q 011791 266 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSG 345 (477)
Q Consensus 266 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~ 345 (477)
..++++|||+||++|+.+.|.|.++.++|. ++ .++.+|.+ |+|.+
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~----~~--~F~~V~~d-----------------------------~~V~~ 62 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP----SL--EFYVVNLA-----------------------------DANNE 62 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC----Cc--EEEEEccc-----------------------------cCccc
Confidence 457999999999999999999999999874 24 44455521 79999
Q ss_pred cceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCCchh-h----hccccccceeeccCCce---
Q 011791 346 IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPEN-V----KHALHEHELVLDRCGVY--- 417 (477)
Q Consensus 346 ~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~----~~~~~~~~~~l~~~~~~--- 417 (477)
+||++++ ++|+.+.+ ..|+++ .+|...+.......+.+ . +..-.+|+++++|++.+
T Consensus 63 vPtfv~~-~~g~~i~r-------~~G~~~--------~~~~~~~~~~~~~~~~~~~~~~v~~li~~~~Vvvf~Kg~~~~p 126 (204)
T PTZ00062 63 YGVFEFY-QNSQLINS-------LEGCNT--------STLVSFIRGWAQKGSSEDTVEKIERLIRNHKILLFMKGSKTFP 126 (204)
T ss_pred ceEEEEE-ECCEEEee-------eeCCCH--------HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCEEEEEccCCCCC
Confidence 9999999 79999988 556555 67777777766654432 2 22223899999999765
Q ss_pred eccCCCC
Q 011791 418 SCDGCDE 424 (477)
Q Consensus 418 ~~~~C~~ 424 (477)
.|+.|..
T Consensus 127 ~C~~C~~ 133 (204)
T PTZ00062 127 FCRFSNA 133 (204)
T ss_pred CChhHHH
Confidence 5555553
|
|
| >TIGR02740 TraF-like TraF-like protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.1e-12 Score=122.88 Aligned_cols=88 Identities=24% Similarity=0.371 Sum_probs=69.9
Q ss_pred CceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhH
Q 011791 256 GKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKA 335 (477)
Q Consensus 256 ~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 335 (477)
+...+++++|+++||+||++||++|+.+.|.|++++++++ ++|++|++|.... ..+|...+ +.
T Consensus 157 ~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-----~~Vi~VsvD~~~~-----------~~fp~~~~-d~ 219 (271)
T TIGR02740 157 KDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-----IEVLPVSVDGGPL-----------PGFPNARP-DA 219 (271)
T ss_pred HHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-----cEEEEEeCCCCcc-----------ccCCcccC-CH
Confidence 3456677889999999999999999999999999998873 7899999997542 12444422 34
Q ss_pred HHHHhcCCCCcceEEEECCCCcEEE
Q 011791 336 SLSRKFKVSGIPMLVAIGPSGRTIT 360 (477)
Q Consensus 336 ~l~~~~~v~~~Pt~~lid~~G~iv~ 360 (477)
.+.+.|||.++|+++|++++|+.+.
T Consensus 220 ~la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 220 GQAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred HHHHHcCCCcCCeEEEEECCCCEEE
Confidence 5789999999999999998554443
|
This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein. |
| >cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.8e-12 Score=103.46 Aligned_cols=71 Identities=24% Similarity=0.481 Sum_probs=59.0
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|+|||+||++|+.+.|.+.++++++++. +.+..|+++... .+++.|+|+
T Consensus 19 ~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~i~ 72 (104)
T cd03004 19 KEPWLVDFYAPWCGPCQALLPELRKAARALKGK---VKVGSVDCQKYE-----------------------SLCQQANIR 72 (104)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCchH-----------------------HHHHHcCCC
Confidence 679999999999999999999999999998643 667777666433 688999999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++||++++..+|+.+.+
T Consensus 73 ~~Pt~~~~~~g~~~~~~ 89 (104)
T cd03004 73 AYPTIRLYPGNASKYHS 89 (104)
T ss_pred cccEEEEEcCCCCCceE
Confidence 99999999655466655
|
This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. |
| >cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-12 Score=108.03 Aligned_cols=73 Identities=26% Similarity=0.599 Sum_probs=57.2
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+|+|||+|||+||++|+.+.|.+.+....... +..++.|++|.+.+ ...+.|++
T Consensus 18 ~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~---~~~fv~v~vd~~~~----------------------~~~~~~~~ 72 (117)
T cd02959 18 SGKPLMLLIHKTWCGACKALKPKFAESKEISEL---SHNFVMVNLEDDEE----------------------PKDEEFSP 72 (117)
T ss_pred cCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh---cCcEEEEEecCCCC----------------------chhhhccc
Confidence 489999999999999999999999887665432 23467777775431 23456788
Q ss_pred CC--cceEEEECCCCcEEEe
Q 011791 344 SG--IPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~--~Pt~~lid~~G~iv~~ 361 (477)
.+ +||+++++++|+++.+
T Consensus 73 ~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 73 DGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred CCCccceEEEECCCCCCchh
Confidence 76 9999999999999875
|
Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney. |
| >cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.1e-12 Score=109.76 Aligned_cols=74 Identities=24% Similarity=0.481 Sum_probs=62.9
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
++++++|+|||+||++|+++.|.++++++++++. ++.++.|++|... ++++.|+|
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~--~v~f~~VDvd~~~-----------------------~la~~~~V 100 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN--NLKFGKIDIGRFP-----------------------NVAEKFRV 100 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC--CeEEEEEECCCCH-----------------------HHHHHcCc
Confidence 3679999999999999999999999999998643 5888888888654 57778888
Q ss_pred CC------cceEEEECCCCcEEEecc
Q 011791 344 SG------IPMLVAIGPSGRTITKEA 363 (477)
Q Consensus 344 ~~------~Pt~~lid~~G~iv~~~~ 363 (477)
.+ +||++++ ++|+.+.+..
T Consensus 101 ~~~~~v~~~PT~ilf-~~Gk~v~r~~ 125 (152)
T cd02962 101 STSPLSKQLPTIILF-QGGKEVARRP 125 (152)
T ss_pred eecCCcCCCCEEEEE-ECCEEEEEEe
Confidence 77 9999999 6999998753
|
It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. |
| >cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.7e-12 Score=110.78 Aligned_cols=115 Identities=16% Similarity=0.293 Sum_probs=96.9
Q ss_pred cCCCccee-ccC---CCceeccc-CCCCEEEEEEe-CCCChhhHhH-hHHHHHHHHHHHhcCCcE-EEEEEeCCCChhHH
Q 011791 244 SGDLDFVV-GKN---GGKVPVSD-LAGKTILLYFS-AHWCPPCRAF-LPKLIDAYKKIKERNESL-EVVFISSDRDQTSF 315 (477)
Q Consensus 244 ~~~p~f~l-~~~---g~~~~l~~-~~gk~vll~F~-a~wC~~C~~~-~p~l~~l~~~~~~~~~~~-~iv~i~~d~~~~~~ 315 (477)
...|+|.+ +.+ |+.+++++ ++||+++|+|| +.||+.|..+ ++.|++.+++|.+. +. +|++||.| +....
T Consensus 3 ~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~--g~~~V~~iS~D-~~~~~ 79 (155)
T cd03013 3 DKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAK--GVDEVICVSVN-DPFVM 79 (155)
T ss_pred CcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC--CCCEEEEEECC-CHHHH
Confidence 45699998 664 89999999 58887777776 7899999999 99999999999876 67 69999999 55678
Q ss_pred HHHHhcCCC-ceeccCcchhHHHHHhcCCC------C-----cceEEEECCCCcEEEec
Q 011791 316 DEFFKGMPW-LALPFGDARKASLSRKFKVS------G-----IPMLVAIGPSGRTITKE 362 (477)
Q Consensus 316 ~~~~~~~~~-~~~p~~~d~~~~l~~~~~v~------~-----~Pt~~lid~~G~iv~~~ 362 (477)
++|.++++. ..+|++.|.+..+++.||+. + ...+++|| +|+|+...
T Consensus 80 ~~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~ 137 (155)
T cd03013 80 KAWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLF 137 (155)
T ss_pred HHHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEE
Confidence 889888886 48999999999999999983 1 36789998 79999874
|
The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases |
| >cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1 | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.6e-12 Score=102.87 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=62.4
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+|+|||.|+|+||++|+.+.|.|.++++++++. +.++.|++|..+ ++++.|+|
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~---~~f~kVDVDev~-----------------------dva~~y~I 66 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM---ASIYLVDVDKVP-----------------------VYTQYFDI 66 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc---eEEEEEeccccH-----------------------HHHHhcCc
Confidence 4899999999999999999999999999998643 566777777443 68999999
Q ss_pred CCcceEEEECCCCcEEEecc
Q 011791 344 SGIPMLVAIGPSGRTITKEA 363 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~~~ 363 (477)
++.||++++ ++|+-+..+-
T Consensus 67 ~amPtfvff-kngkh~~~d~ 85 (114)
T cd02986 67 SYIPSTIFF-FNGQHMKVDY 85 (114)
T ss_pred eeCcEEEEE-ECCcEEEEec
Confidence 999999999 7888877653
|
Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. |
| >PRK10606 btuE putative glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5e-12 Score=113.91 Aligned_cols=73 Identities=14% Similarity=0.181 Sum_probs=62.9
Q ss_pred cCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC-------CCHHHHH
Q 011791 85 HSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------DEEESFK 156 (477)
Q Consensus 85 ~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D-------~~~~~~~ 156 (477)
.+++|.+ +.+|+.+++++++||+|+|.|||+||++|. .++.|+++|++|+++| ++|++|+++ .+.++..
T Consensus 4 ~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~g--l~Vlg~p~nqf~~qe~~~~~ei~ 80 (183)
T PRK10606 4 SILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQG--FVVLGFPCNQFLGQEPGSDEEIK 80 (183)
T ss_pred CccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCC--eEEEEeeccccccCCCCCHHHHH
Confidence 4566744 889999999999999999999999999996 6999999999999888 999999986 3456667
Q ss_pred Hhhc
Q 011791 157 RDLG 160 (477)
Q Consensus 157 ~~~~ 160 (477)
++.+
T Consensus 81 ~f~~ 84 (183)
T PRK10606 81 TYCR 84 (183)
T ss_pred HHHH
Confidence 7765
|
|
| >cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.3e-12 Score=103.73 Aligned_cols=69 Identities=29% Similarity=0.574 Sum_probs=59.0
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.|++++|+|||+||++|+++.|.+.++++++++. +.++.++++.+. ...+++.|+|
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~v~~~~~~---------------------~~~~~~~~~i 72 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL---VQVAAVDCDEDK---------------------NKPLCGKYGV 72 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC---ceEEEEecCccc---------------------cHHHHHHcCC
Confidence 3789999999999999999999999999998653 778888887532 2368899999
Q ss_pred CCcceEEEECCCC
Q 011791 344 SGIPMLVAIGPSG 356 (477)
Q Consensus 344 ~~~Pt~~lid~~G 356 (477)
+++||++++++++
T Consensus 73 ~~~Pt~~~~~~~~ 85 (109)
T cd03002 73 QGFPTLKVFRPPK 85 (109)
T ss_pred CcCCEEEEEeCCC
Confidence 9999999997666
|
MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. |
| >PLN00410 U5 snRNP protein, DIM1 family; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-11 Score=104.47 Aligned_cols=71 Identities=10% Similarity=0.197 Sum_probs=60.4
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+++|||.|||+||+||+.+.|.|.++++++++. +.|+.|++|..+ +++..|+|
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~---~~~~kVDVDe~~-----------------------dla~~y~I 75 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF---AVIYLVDITEVP-----------------------DFNTMYEL 75 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCCCH-----------------------HHHHHcCc
Confidence 3789999999999999999999999999998764 677888888654 68999999
Q ss_pred CCcceEE-EECCCCc-EEEe
Q 011791 344 SGIPMLV-AIGPSGR-TITK 361 (477)
Q Consensus 344 ~~~Pt~~-lid~~G~-iv~~ 361 (477)
++.|+++ ++ ++|+ .+.+
T Consensus 76 ~~~~t~~~ff-k~g~~~vd~ 94 (142)
T PLN00410 76 YDPCTVMFFF-RNKHIMIDL 94 (142)
T ss_pred cCCCcEEEEE-ECCeEEEEE
Confidence 9887776 77 7887 6666
|
|
| >COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-11 Score=108.46 Aligned_cols=139 Identities=20% Similarity=0.344 Sum_probs=112.0
Q ss_pred hhccCCCccee-cc-CCC---ceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCC--h
Q 011791 241 VLVSGDLDFVV-GK-NGG---KVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD--Q 312 (477)
Q Consensus 241 ~~~~~~p~f~l-~~-~g~---~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~--~ 312 (477)
+++...|+|.. .. .|. +++++++.||+++|+|| +...+.|..++..++++|.+|+++ +.+|+++|+|.. .
T Consensus 4 lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~--g~eVigvS~Ds~fsH 81 (194)
T COG0450 4 LIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKR--GVEVIGVSTDSVFSH 81 (194)
T ss_pred ccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHc--CCEEEEEecCcHHHH
Confidence 45667799998 44 553 89999998999999999 789999999999999999999988 799999999963 4
Q ss_pred hHHHHHHhcCCC---ceeccCcchhHHHHHhcCCC------CcceEEEECCCCcEEEeccchhhhhcCCCCCCCC-HHHH
Q 011791 313 TSFDEFFKGMPW---LALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFT-EERM 382 (477)
Q Consensus 313 ~~~~~~~~~~~~---~~~p~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~-~~~~ 382 (477)
..|.+...+..- +.+|+..|.+.++++.||+- ..-.+|+|||+|+|+.... ++.+ .+++
T Consensus 82 ~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v-----------~~~~iGRn~ 150 (194)
T COG0450 82 KAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILV-----------NPLTIGRNV 150 (194)
T ss_pred HHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEE-----------ecCCCCcCH
Confidence 567777655543 78999999999999999984 4567999999999987632 1222 5666
Q ss_pred HHHHHHHHHH
Q 011791 383 KEIDGQYNEM 392 (477)
Q Consensus 383 ~~l~~~~~~~ 392 (477)
++++..++.+
T Consensus 151 dEilR~idAl 160 (194)
T COG0450 151 DEILRVIDAL 160 (194)
T ss_pred HHHHHHHHHH
Confidence 7777777664
|
|
| >PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.1e-12 Score=103.70 Aligned_cols=95 Identities=19% Similarity=0.447 Sum_probs=65.3
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.||+++|+||++||++|+.+.+.+.+..+-...-..++.++.++++...+....+....+. +.......++.+.|||
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQ---KNVRLSNKELAQRYGV 80 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCH---SSCHHHHHHHHHHTT-
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccc---hhhhHHHHHHHHHcCC
Confidence 4899999999999999999999888654321111124888999888665544455443321 2222334579999999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
+++||++++|++|+++.+
T Consensus 81 ~gtPt~~~~d~~G~~v~~ 98 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKIVYR 98 (112)
T ss_dssp -SSSEEEECTTTSCEEEE
T ss_pred CccCEEEEEcCCCCEEEE
Confidence 999999999999999876
|
... |
| >cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-11 Score=102.96 Aligned_cols=73 Identities=18% Similarity=0.436 Sum_probs=59.4
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHH-hcC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR-KFK 342 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~-~~~ 342 (477)
.||+++|.||++||++|+++.|.+.++++++++. ++.+..|++|.+. ..+++ .|+
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~--~~~~~~vd~d~~~----------------------~~~~~~~~~ 75 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGS--NVKVAKFNADGEQ----------------------REFAKEELQ 75 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccC--CeEEEEEECCccc----------------------hhhHHhhcC
Confidence 3799999999999999999999999999999843 5888888877532 13554 599
Q ss_pred CCCcceEEEECCCCcEEE
Q 011791 343 VSGIPMLVAIGPSGRTIT 360 (477)
Q Consensus 343 v~~~Pt~~lid~~G~iv~ 360 (477)
|+++||+++++++++...
T Consensus 76 v~~~Pti~~f~~~~~~~~ 93 (109)
T cd02993 76 LKSFPTILFFPKNSRQPI 93 (109)
T ss_pred CCcCCEEEEEcCCCCCce
Confidence 999999999977665443
|
APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red |
| >cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-11 Score=103.62 Aligned_cols=72 Identities=11% Similarity=0.177 Sum_probs=59.1
Q ss_pred CCEEEEEEeCCCChh--hH--hHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHh
Q 011791 265 GKTILLYFSAHWCPP--CR--AFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 340 (477)
Q Consensus 265 gk~vll~F~a~wC~~--C~--~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 340 (477)
..++|++||++||++ |+ .+.|.+.++++++-.. .++.|+.|++|... .++++
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~-~~v~~~kVD~d~~~-----------------------~La~~ 82 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLED-KGIGFGLVDSKKDA-----------------------KVAKK 82 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhc-CCCEEEEEeCCCCH-----------------------HHHHH
Confidence 468999999999987 99 8889999999887221 14778877777554 69999
Q ss_pred cCCCCcceEEEECCCCcEEEe
Q 011791 341 FKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 341 ~~v~~~Pt~~lid~~G~iv~~ 361 (477)
|+|+++||++++ ++|+++..
T Consensus 83 ~~I~~iPTl~lf-k~G~~v~~ 102 (120)
T cd03065 83 LGLDEEDSIYVF-KDDEVIEY 102 (120)
T ss_pred cCCccccEEEEE-ECCEEEEe
Confidence 999999999999 79998763
|
It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2 |
| >cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-11 Score=102.16 Aligned_cols=73 Identities=18% Similarity=0.285 Sum_probs=62.3
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.+++|+|+|||+||+||+.+.|.|.++.+++++. +.++-|.+|..+ .+++.|+|
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~---v~f~kVDvD~~~-----------------------~la~~~~V 66 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF---AVIYLVDIDEVP-----------------------DFNKMYEL 66 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc---eEEEEEECCCCH-----------------------HHHHHcCC
Confidence 3578999999999999999999999999999765 677778877653 48899999
Q ss_pred ccCCeEEEECCCCCccccch
Q 011791 184 STLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~~ 203 (477)
.++||++++. +|+.+.+..
T Consensus 67 ~~iPTf~~fk-~G~~v~~~~ 85 (114)
T cd02954 67 YDPPTVMFFF-RNKHMKIDL 85 (114)
T ss_pred CCCCEEEEEE-CCEEEEEEc
Confidence 9999999996 788887664
|
It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing. |
| >KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.9e-12 Score=113.64 Aligned_cols=88 Identities=26% Similarity=0.552 Sum_probs=72.4
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+|.|+|+|+|+||+||++..|.+..+.++|+. .||+.+|-++ .+..+..+||
T Consensus 20 g~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~------aVFlkVdVd~---------------------c~~taa~~gV 72 (288)
T KOG0908|consen 20 GGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG------AVFLKVDVDE---------------------CRGTAATNGV 72 (288)
T ss_pred CceEEEEEEEecccchHHhhhhHHHHhhhhCcc------cEEEEEeHHH---------------------hhchhhhcCc
Confidence 379999999999999999999999999999964 3555655443 3457888999
Q ss_pred CCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHc
Q 011791 344 SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAK 394 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 394 (477)
+++||++++ .+|+-+.+ +.|+++ ..|++++.+.+.
T Consensus 73 ~amPTFiff-~ng~kid~-------~qGAd~--------~gLe~kv~~~~s 107 (288)
T KOG0908|consen 73 NAMPTFIFF-RNGVKIDQ-------IQGADA--------SGLEEKVAKYAS 107 (288)
T ss_pred ccCceEEEE-ecCeEeee-------ecCCCH--------HHHHHHHHHHhc
Confidence 999999999 88988887 778776 677777777664
|
|
| >PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.4e-11 Score=98.31 Aligned_cols=70 Identities=30% Similarity=0.770 Sum_probs=60.6
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|+||++||++|+.+.|.|.++.+++++ ++.++.|+.+... .+++.|+|.
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~~~~-----------------------~l~~~~~v~ 70 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD---NVKFAKVDCDENK-----------------------ELCKKYGVK 70 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT---TSEEEEEETTTSH-----------------------HHHHHTTCS
T ss_pred CCCEEEEEeCCCCCccccccceeccccccccc---ccccchhhhhccc-----------------------hhhhccCCC
Confidence 79999999999999999999999999999876 3677777666443 689999999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++|+++++ ++|+.+.+
T Consensus 71 ~~Pt~~~~-~~g~~~~~ 86 (103)
T PF00085_consen 71 SVPTIIFF-KNGKEVKR 86 (103)
T ss_dssp SSSEEEEE-ETTEEEEE
T ss_pred CCCEEEEE-ECCcEEEE
Confidence 99999999 67887765
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A .... |
| >cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.8e-11 Score=99.02 Aligned_cols=70 Identities=23% Similarity=0.465 Sum_probs=57.8
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|+||++||++|+.+.|.|.++.+++.. ++.++.++.+.. ..+.+.|+|.
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~---~i~~~~vd~~~~-----------------------~~~~~~~~i~ 67 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP---SVLFLSIEAEEL-----------------------PEISEKFEIT 67 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC---ceEEEEEccccC-----------------------HHHHHhcCCc
Confidence 68999999999999999999999999988732 355555544422 3688999999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++||++++ ++|+++.+
T Consensus 68 ~~Pt~~~~-~~g~~~~~ 83 (97)
T cd02984 68 AVPTFVFF-RNGTIVDR 83 (97)
T ss_pred cccEEEEE-ECCEEEEE
Confidence 99999999 58998877
|
PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. |
| >cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-11 Score=101.81 Aligned_cols=70 Identities=14% Similarity=0.237 Sum_probs=60.4
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|+||++||++|+.+.|.|.++.+++. ++.++-|+++... .+++.|+|.
T Consensus 22 ~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~----~i~f~~Vd~~~~~-----------------------~l~~~~~v~ 74 (113)
T cd02989 22 SERVVCHFYHPEFFRCKIMDKHLEILAKKHL----ETKFIKVNAEKAP-----------------------FLVEKLNIK 74 (113)
T ss_pred CCcEEEEEECCCCccHHHHHHHHHHHHHHcC----CCEEEEEEcccCH-----------------------HHHHHCCCc
Confidence 5789999999999999999999999998874 3677777776543 689999999
Q ss_pred CcceEEEECCCCcEEEec
Q 011791 345 GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~~ 362 (477)
++||++++ ++|+.+.+.
T Consensus 75 ~vPt~l~f-k~G~~v~~~ 91 (113)
T cd02989 75 VLPTVILF-KNGKTVDRI 91 (113)
T ss_pred cCCEEEEE-ECCEEEEEE
Confidence 99999999 799988764
|
The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. |
| >PTZ00443 Thioredoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.5e-11 Score=111.75 Aligned_cols=70 Identities=24% Similarity=0.525 Sum_probs=58.1
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|+|||+||++|+++.|.++++++++++. +.+..++++.. ..+++.|+|+
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~---v~~~~VD~~~~-----------------------~~l~~~~~I~ 105 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ---VNVADLDATRA-----------------------LNLAKRFAIK 105 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEecCccc-----------------------HHHHHHcCCC
Confidence 579999999999999999999999999998753 55555544432 3689999999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++||+++++ +|+++..
T Consensus 106 ~~PTl~~f~-~G~~v~~ 121 (224)
T PTZ00443 106 GYPTLLLFD-KGKMYQY 121 (224)
T ss_pred cCCEEEEEE-CCEEEEe
Confidence 999999995 8887765
|
|
| >cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.2e-11 Score=97.04 Aligned_cols=71 Identities=21% Similarity=0.432 Sum_probs=60.8
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+++++|+||++||++|+.+.|.+.++.++++++ +.++.++.|... ++...++|
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~---v~~~~id~d~~~-----------------------~l~~~~~v 65 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGA---VHFVEIDIDEDQ-----------------------EIAEAAGI 65 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCCCH-----------------------HHHHHCCC
Confidence 3789999999999999999999999999888643 777777776443 57889999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
.++|+++++ ++|+++.+
T Consensus 66 ~~vPt~~i~-~~g~~v~~ 82 (97)
T cd02949 66 MGTPTVQFF-KDKELVKE 82 (97)
T ss_pred eeccEEEEE-ECCeEEEE
Confidence 999999999 58998876
|
The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. |
| >cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-11 Score=102.69 Aligned_cols=69 Identities=19% Similarity=0.317 Sum_probs=57.8
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|+||++||++|+.+.|.++++++++. ++.++.|+++ . . .+++.|+|+
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~----~v~f~~vd~~--~---------------------~-~l~~~~~i~ 75 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP----ETKFVKINAE--K---------------------A-FLVNYLDIK 75 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC----CcEEEEEEch--h---------------------h-HHHHhcCCC
Confidence 5899999999999999999999999998874 3555555544 2 2 478899999
Q ss_pred CcceEEEECCCCcEEEec
Q 011791 345 GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~~ 362 (477)
++||++++ ++|+.+.+.
T Consensus 76 ~~Pt~~~f-~~G~~v~~~ 92 (113)
T cd02957 76 VLPTLLVY-KNGELIDNI 92 (113)
T ss_pred cCCEEEEE-ECCEEEEEE
Confidence 99999999 789998774
|
Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te |
| >cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-11 Score=99.56 Aligned_cols=72 Identities=21% Similarity=0.313 Sum_probs=63.2
Q ss_pred CCCEEEEEEeCCC--ChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhc
Q 011791 264 AGKTILLYFSAHW--CPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 341 (477)
Q Consensus 264 ~gk~vll~F~a~w--C~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 341 (477)
.|.+++|.||++| ||+|+.+.|.|.+++++|.++ +.++.|++|... .++..|
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~---v~f~kVdid~~~-----------------------~la~~f 79 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR---FRAAVVGRADEQ-----------------------ALAARF 79 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc---EEEEEEECCCCH-----------------------HHHHHc
Confidence 4788999999997 999999999999999999765 677777777554 689999
Q ss_pred CCCCcceEEEECCCCcEEEec
Q 011791 342 KVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 342 ~v~~~Pt~~lid~~G~iv~~~ 362 (477)
+|+++||++++ ++|+++.+.
T Consensus 80 ~V~sIPTli~f-kdGk~v~~~ 99 (111)
T cd02965 80 GVLRTPALLFF-RDGRYVGVL 99 (111)
T ss_pred CCCcCCEEEEE-ECCEEEEEE
Confidence 99999999999 799999873
|
They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway. |
| >TIGR01126 pdi_dom protein disulfide-isomerase domain | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.3e-11 Score=97.54 Aligned_cols=71 Identities=23% Similarity=0.505 Sum_probs=57.8
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
++++++|+||++||++|+.+.+.++++++.++.. .++.++.++.+.. ..+++.|+|
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~-----------------------~~~~~~~~i 67 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGD-PDIVLAKVDATAE-----------------------KDLASRFGV 67 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccC-CceEEEEEEccch-----------------------HHHHHhCCC
Confidence 5899999999999999999999999999988753 1365655555433 368899999
Q ss_pred CCcceEEEECCCCcE
Q 011791 344 SGIPMLVAIGPSGRT 358 (477)
Q Consensus 344 ~~~Pt~~lid~~G~i 358 (477)
+++|+++++++++.+
T Consensus 68 ~~~P~~~~~~~~~~~ 82 (102)
T TIGR01126 68 SGFPTIKFFPKGKKP 82 (102)
T ss_pred CcCCEEEEecCCCcc
Confidence 999999999777653
|
This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK. |
| >cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44 | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-11 Score=99.84 Aligned_cols=69 Identities=14% Similarity=0.199 Sum_probs=55.5
Q ss_pred CCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 011791 101 SDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180 (477)
Q Consensus 101 s~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (477)
++++||+++|+|||+||++|+.++|.|.++++.+++ +.++.|..+. ....+++.
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~~~----------------------~~~~l~~~ 67 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEESS----------------------IKPSLLSR 67 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEECCC----------------------CCHHHHHh
Confidence 356899999999999999999999999999999853 5555554331 11357899
Q ss_pred cCcccCCeEEEECCC
Q 011791 181 FELSTLPTLVIIGPD 195 (477)
Q Consensus 181 ~~v~~~P~~~lid~~ 195 (477)
|+|.++||+++++++
T Consensus 68 ~~V~~~PT~~lf~~g 82 (100)
T cd02999 68 YGVVGFPTILLFNST 82 (100)
T ss_pred cCCeecCEEEEEcCC
Confidence 999999999999854
|
CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. |
| >cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.1e-11 Score=99.51 Aligned_cols=75 Identities=25% Similarity=0.497 Sum_probs=58.5
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|+||++||++|+.+.|.+.++++++++..+.+.+..++++.+. ...+++.|+|+
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~---------------------~~~~~~~~~i~ 77 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE---------------------NVALCRDFGVT 77 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh---------------------hHHHHHhCCCC
Confidence 479999999999999999999999999999754334666666554332 24688999999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++||++++ ++|+....
T Consensus 78 ~~Pt~~lf-~~~~~~~~ 93 (114)
T cd02992 78 GYPTLRYF-PPFSKEAT 93 (114)
T ss_pred CCCEEEEE-CCCCccCC
Confidence 99999999 55554443
|
QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen. |
| >PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.3e-11 Score=106.59 Aligned_cols=120 Identities=23% Similarity=0.404 Sum_probs=94.1
Q ss_pred ccCcCCCc-eecCCCCeEecCCCCCCEEEEEEecCCCc-cchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC---CHHHHH
Q 011791 82 LTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYK-ASAEFTPRLVEVYEKLKGKGESFEIVLISLDD---EEESFK 156 (477)
Q Consensus 82 ~g~~~p~f-l~~~~g~~v~ls~l~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~---~~~~~~ 156 (477)
.....++| +.|.+|+++++++++||+++|+|..+.|+ .|...+..|.++++++.+.+.++++|+||+|. +++..+
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~ 107 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLK 107 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHH
T ss_pred CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHH
Confidence 34456778 45999999999999999999999999996 89999999999999999877789999999995 356677
Q ss_pred HhhcCC--CCccccCCchhHHHHHHHcCc----------------ccCCeEEEECCCCCcccc
Q 011791 157 RDLGSM--PWLALPFKDKSREKLARYFEL----------------STLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 157 ~~~~~~--~~~~~~~~~~~~~~l~~~~~v----------------~~~P~~~lid~~G~i~~~ 201 (477)
++.+.+ .|..+....+....+++.|++ .+...++|||++|+++..
T Consensus 108 ~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~ 170 (174)
T PF02630_consen 108 KYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAI 170 (174)
T ss_dssp HHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEE
T ss_pred HHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEE
Confidence 777754 466665555555678888875 234588999999998754
|
In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A .... |
| >cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.4e-11 Score=97.02 Aligned_cols=75 Identities=23% Similarity=0.527 Sum_probs=59.6
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
++++++|+|||+||++|+++.|.++++++.++.. ..+.++.++++.+. ...+++.|+|
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~---------------------~~~~~~~~~i 73 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKED-GKGVLAAVDCTKPE---------------------HDALKEEYNV 73 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhC-CceEEEEEECCCCc---------------------cHHHHHhCCC
Confidence 3679999999999999999999999999998752 24556656655421 2368899999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
+++||++++ ++|+++.+
T Consensus 74 ~~~Pt~~~~-~~g~~~~~ 90 (104)
T cd02997 74 KGFPTFKYF-ENGKFVEK 90 (104)
T ss_pred ccccEEEEE-eCCCeeEE
Confidence 999999999 67887655
|
PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. |
| >cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-10 Score=96.76 Aligned_cols=105 Identities=11% Similarity=0.166 Sum_probs=65.9
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHH---HHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHh
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 340 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 340 (477)
.+|+|+|+|+|+||++|+.+.+.. .++.+.+.+. +.+|.++++...+..+.+.+ .+...
T Consensus 14 ~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~---fv~VkvD~~~~~~~~~~~~~---------------~~~~~ 75 (124)
T cd02955 14 EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNEN---FVPIKVDREERPDVDKIYMN---------------AAQAM 75 (124)
T ss_pred cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCC---EEEEEEeCCcCcHHHHHHHH---------------HHHHh
Confidence 489999999999999999997632 2455555433 55555555543221111111 22336
Q ss_pred cCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHH
Q 011791 341 FKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEM 392 (477)
Q Consensus 341 ~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~ 392 (477)
|++.|+|+++++|++|++++..+. ..+.+ .+.+..+..+.+.++++
T Consensus 76 ~~~~G~Pt~vfl~~~G~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~ 121 (124)
T cd02955 76 TGQGGWPLNVFLTPDLKPFFGGTY----FPPED--RYGRPGFKTVLEKIREL 121 (124)
T ss_pred cCCCCCCEEEEECCCCCEEeeeee----cCCCC--cCCCcCHHHHHHHHHHH
Confidence 799999999999999999988641 11111 13344456666666553
|
The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation. |
| >PTZ00062 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-10 Score=106.49 Aligned_cols=61 Identities=10% Similarity=0.085 Sum_probs=49.1
Q ss_pred CEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCccc
Q 011791 106 KTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELST 185 (477)
Q Consensus 106 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 185 (477)
..++++|||+||++|+.+.|.|.++.++|.+ +.++-| |.+ |+|.+
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~----~~F~~V--~~d-----------------------------~~V~~ 62 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS----LEFYVV--NLA-----------------------------DANNE 62 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC----cEEEEE--ccc-----------------------------cCccc
Confidence 3478999999999999999999999999854 444444 411 88999
Q ss_pred CCeEEEECCCCCccccc
Q 011791 186 LPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 186 ~P~~~lid~~G~i~~~~ 202 (477)
+|+++++. +|+.+.+.
T Consensus 63 vPtfv~~~-~g~~i~r~ 78 (204)
T PTZ00062 63 YGVFEFYQ-NSQLINSL 78 (204)
T ss_pred ceEEEEEE-CCEEEeee
Confidence 99999995 88877764
|
|
| >KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.5e-11 Score=102.05 Aligned_cols=71 Identities=23% Similarity=0.403 Sum_probs=61.1
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++|+|+|||+||+||+...|.|.++..+|.++ |.+.-|.+|+..+ ++..|+|.
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~---~k~~kvdtD~~~e-----------------------la~~Y~I~ 114 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK---FKLYKVDTDEHPE-----------------------LAEDYEIS 114 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe---EEEEEEccccccc-----------------------hHhhccee
Confidence 478999999999999999999999999999776 8888888886643 78899999
Q ss_pred cCCeEEEECCCCCccccc
Q 011791 185 TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~ 202 (477)
++|+++++. +|..+.+.
T Consensus 115 avPtvlvfk-nGe~~d~~ 131 (150)
T KOG0910|consen 115 AVPTVLVFK-NGEKVDRF 131 (150)
T ss_pred eeeEEEEEE-CCEEeeee
Confidence 999999997 66655443
|
|
| >KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-10 Score=118.44 Aligned_cols=260 Identities=18% Similarity=0.207 Sum_probs=138.2
Q ss_pred ChhHHHhHhhhcccCCcceEEEEcCCCeEechhhHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhccCcCCC-
Q 011791 10 DSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRD- 88 (477)
Q Consensus 10 D~~~~~~L~~~f~v~g~Ptl~~~~~~g~~~~~~g~~~i~~~g~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~p~- 88 (477)
||+.+..+|++|+|+|+||+++|..+..++...|.. +.+.+.+..... +........+.
T Consensus 86 d~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~~------------~~~~~~~~~~~~--------~~~~~~~~~~~~ 145 (383)
T KOG0191|consen 86 DCDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGPR------------NAESLAEFLIKE--------LEPSVKKLVEGE 145 (383)
T ss_pred CchhhHHHHHhcCCccCcEEEEEcCCCceeeccCcc------------cHHHHHHHHHHh--------hccccccccCCc
Confidence 889999999999999999999999542344333311 112222111110 00011111111
Q ss_pred c--eecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCcc
Q 011791 89 F--VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLA 166 (477)
Q Consensus 89 f--l~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~ 166 (477)
. +...+-... .. -....+++.|+++||++|+..+|.+.++...++. +..+++..+..+ .
T Consensus 146 v~~l~~~~~~~~-~~-~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~-~~~v~~~~~d~~--~-------------- 206 (383)
T KOG0191|consen 146 VFELTKDNFDET-VK-DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS-KENVELGKIDAT--V-------------- 206 (383)
T ss_pred eEEccccchhhh-hh-ccCcceEEEEeccccHHhhhcChHHHHHHHHhcc-CcceEEEeeccc--h--------------
Confidence 0 000100000 00 0135688999999999999999999999998876 334777666544 1
Q ss_pred ccCCchhHHHHHHHcCcccCCeEEEECCCCC-ccccchhhHHhhcCCCCCCCChhhHHHHHHHHHHHhhhh-hhhhhhcc
Q 011791 167 LPFKDKSREKLARYFELSTLPTLVIIGPDGK-TLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQ-TLESVLVS 244 (477)
Q Consensus 167 ~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~-i~~~~~~~~i~~~g~~a~P~~~~~~~~l~~~~~~~~~~~-~l~~~~~~ 244 (477)
...++..++|..+|++.++-++.. +....... +...+.+...... ... ....+...
T Consensus 207 -------~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R------------~~~~i~~~v~~~~---~~~~~~~~~~~~ 264 (383)
T KOG0191|consen 207 -------HKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLR------------DSDSIVSFVEKKE---RRNIPEPELKEI 264 (383)
T ss_pred -------HHHHhhhhcccCCceEEEecCCCcccccccccc------------cHHHHHHHHHhhc---CCCCCCcccccc
Confidence 245788999999999999987666 22221110 2222222222111 110 00001111
Q ss_pred CCCc-cee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcC
Q 011791 245 GDLD-FVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 322 (477)
Q Consensus 245 ~~p~-f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~ 322 (477)
..++ +.. -.+..........-+..++.|+++||.+|....|.+...+....... ..+-...++...-
T Consensus 265 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~k~~~~~~--------- 333 (383)
T KOG0191|consen 265 EDKDTFSPTFLDTAEFLDSLEKKKNKFVKFYAPWCGHCGGFAPVYEDKAELGYPDL--SKIKAAKLDCALL--------- 333 (383)
T ss_pred cCccccccchhhhhhhhhhhHHhhhhHhhhhcchhhcccccchhHHHHHhcccccc--ccceeeccccccc---------
Confidence 1111 111 01111111111112457889999999999999999998877711111 2222223332220
Q ss_pred CCceeccCcchhHHHHHhcCCCCcceEEEEC
Q 011791 323 PWLALPFGDARKASLSRKFKVSGIPMLVAIG 353 (477)
Q Consensus 323 ~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid 353 (477)
..++....++++|+..+..
T Consensus 334 ------------~~~~~~~~~~~~~~~~~~~ 352 (383)
T KOG0191|consen 334 ------------KSLCQKAIVRGYPTIKLYN 352 (383)
T ss_pred ------------cchhhHhhhhcCceeEeec
Confidence 1256777788999988884
|
|
| >PTZ00051 thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.9e-11 Score=95.82 Aligned_cols=70 Identities=19% Similarity=0.465 Sum_probs=58.3
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|+||++||++|+.+.|.+.++++++. ++.++.++.+.. ..+++.|+|.
T Consensus 18 ~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~----~~~~~~vd~~~~-----------------------~~~~~~~~v~ 70 (98)
T PTZ00051 18 NELVIVDFYAEWCGPCKRIAPFYEECSKEYT----KMVFVKVDVDEL-----------------------SEVAEKENIT 70 (98)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHcC----CcEEEEEECcch-----------------------HHHHHHCCCc
Confidence 7899999999999999999999999988753 356666655532 3689999999
Q ss_pred CcceEEEECCCCcEEEec
Q 011791 345 GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~~ 362 (477)
++||++++ ++|+++.+.
T Consensus 71 ~~Pt~~~~-~~g~~~~~~ 87 (98)
T PTZ00051 71 SMPTFKVF-KNGSVVDTL 87 (98)
T ss_pred eeeEEEEE-eCCeEEEEE
Confidence 99999988 799998773
|
|
| >cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.8e-11 Score=95.52 Aligned_cols=71 Identities=21% Similarity=0.395 Sum_probs=59.5
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+|++++|+||++||++|+.+.|.+.++++.+.+. +.++.|+.|.. ..+++.|++
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~-----------------------~~l~~~~~i 64 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ---FVLAKVNCDAQ-----------------------PQIAQQFGV 64 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc---EEEEEEeccCC-----------------------HHHHHHcCC
Confidence 4789999999999999999999999999998653 66777766643 347889999
Q ss_pred ccCCeEEEECCCCCcccc
Q 011791 184 STLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~ 201 (477)
.++|++++++ +|+.+.+
T Consensus 65 ~~~Pt~~~~~-~g~~~~~ 81 (96)
T cd02956 65 QALPTVYLFA-AGQPVDG 81 (96)
T ss_pred CCCCEEEEEe-CCEEeee
Confidence 9999999997 8876643
|
Its gene has been sequenced from several gammaproteobacteria and actinobacteria. |
| >TIGR01068 thioredoxin thioredoxin | Back alignment and domain information |
|---|
Probab=99.20 E-value=2e-10 Score=93.23 Aligned_cols=70 Identities=26% Similarity=0.627 Sum_probs=59.9
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|+||++||++|+.+.+.+.++.+++..+ +.++.++.+... .+.+.|+|.
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~v~ 67 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK---VKFVKLNVDENP-----------------------DIAAKYGIR 67 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC---eEEEEEECCCCH-----------------------HHHHHcCCC
Confidence 579999999999999999999999999888643 778877776543 578899999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++|+++++ ++|+++..
T Consensus 68 ~~P~~~~~-~~g~~~~~ 83 (101)
T TIGR01068 68 SIPTLLLF-KNGKEVDR 83 (101)
T ss_pred cCCEEEEE-eCCcEeee
Confidence 99999999 78887765
|
Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. |
| >PHA02278 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.9e-11 Score=97.31 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=60.8
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++++|+|+|||+||+||+.+.|.+.++.+++..+ ..++.|.+|.+.. ....+++.|+|
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~---~~~~~vdvd~~~~-------------------d~~~l~~~~~I 70 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIK---KPILTLNLDAEDV-------------------DREKAVKLFDI 70 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCC---ceEEEEECCcccc-------------------ccHHHHHHCCC
Confidence 4689999999999999999999999998775433 5678888875421 01347899999
Q ss_pred ccCCeEEEECCCCCccccch
Q 011791 184 STLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~~ 203 (477)
.++||++++. +|+.+.+..
T Consensus 71 ~~iPT~i~fk-~G~~v~~~~ 89 (103)
T PHA02278 71 MSTPVLIGYK-DGQLVKKYE 89 (103)
T ss_pred ccccEEEEEE-CCEEEEEEe
Confidence 9999999996 688776653
|
|
| >cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.7e-11 Score=96.80 Aligned_cols=73 Identities=7% Similarity=0.017 Sum_probs=59.3
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.|++++|+|||+||++|+.+.|.|.++++.+++.. +.++.++.| + ..+++.|+|
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~--~~~~~vd~d-~-----------------------~~~~~~~~v 69 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDL--LHFATAEAD-T-----------------------IDTLKRYRG 69 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCc--EEEEEEeCC-C-----------------------HHHHHHcCC
Confidence 36899999999999999999999999999987543 677777766 2 236789999
Q ss_pred ccCCeEEEECCCCCccccch
Q 011791 184 STLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~~ 203 (477)
+++|+++++. +|+.+.+..
T Consensus 70 ~~~Pt~~~~~-~g~~~~~~~ 88 (102)
T cd02948 70 KCEPTFLFYK-NGELVAVIR 88 (102)
T ss_pred CcCcEEEEEE-CCEEEEEEe
Confidence 9999988885 888776553
|
Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which |
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-10 Score=109.04 Aligned_cols=130 Identities=12% Similarity=0.173 Sum_probs=83.0
Q ss_pred CCEEEEEEeC---CCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhc
Q 011791 265 GKTILLYFSA---HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 341 (477)
Q Consensus 265 gk~vll~F~a---~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 341 (477)
+...++.|++ +||++|+.+.|.+.++.+++. ++++..+++|.+. ...+++.|
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~----~~~i~~v~vd~~~---------------------~~~l~~~~ 73 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP----KLKLEIYDFDTPE---------------------DKEEAEKY 73 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC----CceEEEEecCCcc---------------------cHHHHHHc
Confidence 3344555766 999999999999999988873 3667777777543 24789999
Q ss_pred CCCCcceEEEECCCCcEEE-eccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHc---CCchhhhcc--ccccceeeccCC
Q 011791 342 KVSGIPMLVAIGPSGRTIT-KEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAK---GWPENVKHA--LHEHELVLDRCG 415 (477)
Q Consensus 342 ~v~~~Pt~~lid~~G~iv~-~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~--~~~~~~~l~~~~ 415 (477)
+|.++||++++ ++|+.+. + ..|.. +...+..+++.+-.+.. ..+.+.... ..+.+..+..+.
T Consensus 74 ~V~~~Pt~~~f-~~g~~~~~~-------~~G~~----~~~~l~~~i~~~~~~~~~~~~L~~~~~~~l~~~~~pv~I~~F~ 141 (215)
T TIGR02187 74 GVERVPTTIIL-EEGKDGGIR-------YTGIP----AGYEFAALIEDIVRVSQGEPGLSEKTVELLQSLDEPVRIEVFV 141 (215)
T ss_pred CCCccCEEEEE-eCCeeeEEE-------EeecC----CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcEEEEEE
Confidence 99999999999 5777763 4 22311 23334444444322211 111111111 124556666678
Q ss_pred ceeccCCCCCCCeEEE
Q 011791 416 VYSCDGCDEEGRVWAF 431 (477)
Q Consensus 416 ~~~~~~C~~~g~~w~~ 431 (477)
++||+.|......+.-
T Consensus 142 a~~C~~C~~~~~~l~~ 157 (215)
T TIGR02187 142 TPTCPYCPYAVLMAHK 157 (215)
T ss_pred CCCCCCcHHHHHHHHH
Confidence 8999999987665543
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.4e-11 Score=104.13 Aligned_cols=118 Identities=18% Similarity=0.205 Sum_probs=89.9
Q ss_pred ccCcCCCcee-cCC---CCeEecCC-CCCCEE-EEEEecCCCccchhh-HHHHHHHHHHHhcCCCcE-EEEEEEcCCCHH
Q 011791 82 LTSHSRDFVI-SSD---GRKISVSD-LEGKTI-GLYFSMSSYKASAEF-TPRLVEVYEKLKGKGESF-EIVLISLDDEEE 153 (477)
Q Consensus 82 ~g~~~p~fl~-~~~---g~~v~ls~-l~gk~v-ll~F~a~wC~~C~~~-~p~l~~l~~~~~~~g~~~-~vv~is~D~~~~ 153 (477)
+|..+|+|.+ +.+ |+.+++++ ++||++ +++|.+.||+.|..+ ++.+++.++++.+.| . +|++||.|...
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g--~~~V~~iS~D~~~- 77 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG--VDEVICVSVNDPF- 77 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC--CCEEEEEECCCHH-
Confidence 3778999965 554 99999999 588755 555568899999999 999999999999888 8 59999999643
Q ss_pred HHHHhhcCCCC-ccccCCchhHHHHHHHcCcc------c-----CCeEEEECCCCCccccch
Q 011791 154 SFKRDLGSMPW-LALPFKDKSREKLARYFELS------T-----LPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 154 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~v~------~-----~P~~~lid~~G~i~~~~~ 203 (477)
..+++.++... ..++...+....+++.||+. + ...++||| +|+|++...
T Consensus 78 ~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~ 138 (155)
T cd03013 78 VMKAWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFV 138 (155)
T ss_pred HHHHHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEE
Confidence 34445554443 24555556668899999982 1 36779999 799988764
|
The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases |
| >TIGR02740 TraF-like TraF-like protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=2e-11 Score=117.36 Aligned_cols=88 Identities=19% Similarity=0.325 Sum_probs=69.9
Q ss_pred CCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhH
Q 011791 95 GRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSR 174 (477)
Q Consensus 95 g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (477)
.+...+++++|++++|+||++||++|+.++|.|++++++| | ++|++|++|.+... . +|.... .
T Consensus 156 ~~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y---g--~~Vi~VsvD~~~~~------~-----fp~~~~-d 218 (271)
T TIGR02740 156 QKDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY---G--IEVLPVSVDGGPLP------G-----FPNARP-D 218 (271)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHc---C--cEEEEEeCCCCccc------c-----CCcccC-C
Confidence 4457788899999999999999999999999999999988 4 88999999976421 1 222211 2
Q ss_pred HHHHHHcCcccCCeEEEECCCCCcc
Q 011791 175 EKLARYFELSTLPTLVIIGPDGKTL 199 (477)
Q Consensus 175 ~~l~~~~~v~~~P~~~lid~~G~i~ 199 (477)
..+++.|||.++|+++|++++|+.+
T Consensus 219 ~~la~~~gV~~vPtl~Lv~~~~~~v 243 (271)
T TIGR02740 219 AGQAQQLKIRTVPAVFLADPDPNQF 243 (271)
T ss_pred HHHHHHcCCCcCCeEEEEECCCCEE
Confidence 3478899999999999999965443
|
This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein. |
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.8e-10 Score=116.41 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=56.7
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++++++|+|||+||++|+.+.|.+.++++.+.+.+.++.++.|..+.. ..+++.|+|
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~i 73 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-----------------------KDLAQKYGV 73 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-----------------------HHHHHhCCC
Confidence 457899999999999999999999999999987665566666655533 348899999
Q ss_pred ccCCeEEEECCCC
Q 011791 184 STLPTLVIIGPDG 196 (477)
Q Consensus 184 ~~~P~~~lid~~G 196 (477)
.++|+++++..++
T Consensus 74 ~~~Pt~~~~~~g~ 86 (462)
T TIGR01130 74 SGYPTLKIFRNGE 86 (462)
T ss_pred ccccEEEEEeCCc
Confidence 9999999986433
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-10 Score=97.24 Aligned_cols=77 Identities=19% Similarity=0.405 Sum_probs=57.6
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCCh-------hHHHHHHhcCCCceeccCcchhHHH
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ-------TSFDEFFKGMPWLALPFGDARKASL 337 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~-------~~~~~~~~~~~~~~~p~~~d~~~~l 337 (477)
|+.++|+|+++|||+|+.+.|.|.++.++. +..|+.|++|.+. +++.+|.+.++
T Consensus 23 ~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-----~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~-------------- 83 (122)
T TIGR01295 23 KETATFFIGRKTCPYCRKFSGTLSGVVAQT-----KAPIYYIDSENNGSFEMSSLNDLTAFRSRFG-------------- 83 (122)
T ss_pred CCcEEEEEECCCChhHHHHhHHHHHHHHhc-----CCcEEEEECCCccCcCcccHHHHHHHHHHcC--------------
Confidence 778999999999999999999999998873 3669999998542 12222222221
Q ss_pred HHhcCCCCcceEEEECCCCcEEEec
Q 011791 338 SRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 338 ~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
..++|.++||++++ ++|+.+.+.
T Consensus 84 -i~~~i~~~PT~v~~-k~Gk~v~~~ 106 (122)
T TIGR01295 84 -IPTSFMGTPTFVHI-TDGKQVSVR 106 (122)
T ss_pred -CcccCCCCCEEEEE-eCCeEEEEE
Confidence 11356779999999 899999873
|
This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris. |
| >cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.3e-11 Score=97.80 Aligned_cols=74 Identities=20% Similarity=0.228 Sum_probs=61.4
Q ss_pred CCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 011791 103 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 182 (477)
Q Consensus 103 l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (477)
.+|++++|+|||+||++|+.+.|.+.++.+++++.+ +.++.|++|.+ ..+++.|+
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~d~~-----------------------~~l~~~~~ 76 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLG--VGIATVNAGHE-----------------------RRLARKLG 76 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcC--ceEEEEecccc-----------------------HHHHHHcC
Confidence 367999999999999999999999999999997644 77777776643 34788999
Q ss_pred cccCCeEEEECCCCCccccc
Q 011791 183 LSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 183 v~~~P~~~lid~~G~i~~~~ 202 (477)
|.++|+++++. +|+.+...
T Consensus 77 V~~~Pt~~i~~-~g~~~~~~ 95 (111)
T cd02963 77 AHSVPAIVGII-NGQVTFYH 95 (111)
T ss_pred CccCCEEEEEE-CCEEEEEe
Confidence 99999999995 88776553
|
DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. |
| >COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-10 Score=103.14 Aligned_cols=122 Identities=23% Similarity=0.373 Sum_probs=99.5
Q ss_pred hhhccCcCCCcee-cC-CC---CeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCC-
Q 011791 79 RSVLTSHSRDFVI-SS-DG---RKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE- 151 (477)
Q Consensus 79 ~~~~g~~~p~fl~-~~-~g---~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~- 151 (477)
+.++|.++|+|.. .. .| .+++++++.||+++|+|| +...+.|..++..+++.|++++++| .+||+||+|+.
T Consensus 2 ~~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g--~eVigvS~Ds~f 79 (194)
T COG0450 2 MSLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRG--VEVIGVSTDSVF 79 (194)
T ss_pred ccccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcC--CEEEEEecCcHH
Confidence 4578999999954 22 45 399999999999999998 4566899999999999999999999 99999999974
Q ss_pred -HHHHHHhhcCCC---CccccCCchhHHHHHHHcCcc------cCCeEEEECCCCCccccc
Q 011791 152 -EESFKRDLGSMP---WLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 152 -~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~ 202 (477)
..+|.....+.. -+.+|...+...++++.||+. ++-.++|||++|.+.+..
T Consensus 80 sH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~ 140 (194)
T COG0450 80 SHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHIL 140 (194)
T ss_pred HHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEE
Confidence 456777755433 267777788888999999983 466899999999987654
|
|
| >PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.1e-10 Score=102.09 Aligned_cols=119 Identities=26% Similarity=0.457 Sum_probs=95.3
Q ss_pred cCCCccee-ccCCCceecccCCCCEEEEEEeCCCCh-hhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCC---hhHHHHH
Q 011791 244 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCP-PCRAFLPKLIDAYKKIKERNESLEVVFISSDRD---QTSFDEF 318 (477)
Q Consensus 244 ~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~---~~~~~~~ 318 (477)
...++|.+ |.+|+.+++++++||++||+|..+.|+ .|...+..|.++.+++.+++.++++++|++|.. ++.+++|
T Consensus 30 ~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y 109 (174)
T PF02630_consen 30 RIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKY 109 (174)
T ss_dssp CSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHH
T ss_pred ccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHH
Confidence 34588999 999999999999999999999999997 999999999999999987666899999999963 5678899
Q ss_pred HhcC--CCceeccCcchhHHHHHhcCCCC----------------cceEEEECCCCcEEEec
Q 011791 319 FKGM--PWLALPFGDARKASLSRKFKVSG----------------IPMLVAIGPSGRTITKE 362 (477)
Q Consensus 319 ~~~~--~~~~~p~~~d~~~~l~~~~~v~~----------------~Pt~~lid~~G~iv~~~ 362 (477)
.+.+ .|..+....+....+.+.|++.. ...++||||+|+++...
T Consensus 110 ~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y 171 (174)
T PF02630_consen 110 AKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIY 171 (174)
T ss_dssp HHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEE
T ss_pred HHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEE
Confidence 8865 35556555555667888888641 13689999999998763
|
In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A .... |
| >cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.4e-11 Score=100.00 Aligned_cols=87 Identities=23% Similarity=0.407 Sum_probs=65.1
Q ss_pred CC-CEEEEEEecCCCccchhhHHHHH---HHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHH
Q 011791 104 EG-KTIGLYFSMSSYKASAEFTPRLV---EVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 179 (477)
Q Consensus 104 ~g-k~vll~F~a~wC~~C~~~~p~l~---~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 179 (477)
+| |+|+|+||++||++|+.+.|.+. ++.+.+++ + +.++.|++|.+..... +.........+++
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~--~~~~~i~~d~~~~~~~----------~~~~~~~~~~l~~ 78 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-H--FVVVYINIDGDKEVTD----------FDGEALSEKELAR 78 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-h--eEEEEEEccCCceeec----------cCCCCccHHHHHH
Confidence 46 89999999999999999998775 56666654 3 8888898886543111 1111123467889
Q ss_pred HcCcccCCeEEEECCC-CCccccch
Q 011791 180 YFELSTLPTLVIIGPD-GKTLHSNV 203 (477)
Q Consensus 180 ~~~v~~~P~~~lid~~-G~i~~~~~ 203 (477)
.|++.++|++++++++ |+++.+..
T Consensus 79 ~~~v~~~Pt~~~~~~~gg~~~~~~~ 103 (125)
T cd02951 79 KYRVRFTPTVIFLDPEGGKEIARLP 103 (125)
T ss_pred HcCCccccEEEEEcCCCCceeEEec
Confidence 9999999999999999 88877653
|
Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation. |
| >cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1 | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-10 Score=97.31 Aligned_cols=78 Identities=22% Similarity=0.465 Sum_probs=61.2
Q ss_pred CCCEEEEEEeC-------CCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHH
Q 011791 264 AGKTILLYFSA-------HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKAS 336 (477)
Q Consensus 264 ~gk~vll~F~a-------~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 336 (477)
+|++++|+||| +||++|+.+.|.+.++.++++++ +.++.|++|... ...+....
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~---v~fv~Vdvd~~~----------------~w~d~~~~ 80 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPED---CVFIYCDVGDRP----------------YWRDPNNP 80 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCC---CEEEEEEcCCcc----------------cccCcchh
Confidence 47899999999 99999999999999999988643 778888887532 11122346
Q ss_pred HHHhcCCC-CcceEEEECCCCcEEE
Q 011791 337 LSRKFKVS-GIPMLVAIGPSGRTIT 360 (477)
Q Consensus 337 l~~~~~v~-~~Pt~~lid~~G~iv~ 360 (477)
+...|+|+ ++||+++++..++++.
T Consensus 81 ~~~~~~I~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 81 FRTDPKLTTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred hHhccCcccCCCEEEEEcCCceecc
Confidence 88899998 9999999965555544
|
TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases. |
| >cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.8e-10 Score=92.23 Aligned_cols=65 Identities=28% Similarity=0.556 Sum_probs=54.9
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|+||++||++|+++.|.+.+++++++.+ +.++.++.+.. ..+++.|+|+
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~id~~~~-----------------------~~~~~~~~i~ 71 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI---VKVGAVDADVH-----------------------QSLAQQYGVR 71 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---ceEEEEECcch-----------------------HHHHHHCCCC
Confidence 567999999999999999999999999998754 77777766643 2688999999
Q ss_pred CcceEEEECCC
Q 011791 345 GIPMLVAIGPS 355 (477)
Q Consensus 345 ~~Pt~~lid~~ 355 (477)
++|++++++++
T Consensus 72 ~~P~~~~~~~~ 82 (103)
T cd03001 72 GFPTIKVFGAG 82 (103)
T ss_pred ccCEEEEECCC
Confidence 99999999543
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. |
| >cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-10 Score=103.21 Aligned_cols=69 Identities=17% Similarity=0.269 Sum_probs=57.7
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++|||+||++||++|+.+.|.|.+++++|. .+.++-|+++.. .++..|+|.
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~----~vkF~kVd~d~~------------------------~l~~~f~v~ 134 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP----AVKFCKIRASAT------------------------GASDEFDTD 134 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCC----CeEEEEEeccch------------------------hhHHhCCCC
Confidence 4599999999999999999999999998874 356666655521 478889999
Q ss_pred CcceEEEECCCCcEEEec
Q 011791 345 GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~~ 362 (477)
++||+++| ++|+++.+.
T Consensus 135 ~vPTllly-k~G~~v~~~ 151 (175)
T cd02987 135 ALPALLVY-KGGELIGNF 151 (175)
T ss_pred CCCEEEEE-ECCEEEEEE
Confidence 99999999 899999864
|
It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5 | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.1e-10 Score=93.00 Aligned_cols=72 Identities=22% Similarity=0.467 Sum_probs=57.5
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|.||++||++|+.+.|.+.+++++++.. .++.++.++.+.. ...+++.|+|+
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~----------------------~~~~~~~~~i~ 74 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANE-DDVVIAKVDADEA----------------------NKDLAKKYGVS 74 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCC-CCEEEEEEECCCc----------------------chhhHHhCCCC
Confidence 679999999999999999999999999998732 2466666665541 12689999999
Q ss_pred CcceEEEECCCCcEE
Q 011791 345 GIPMLVAIGPSGRTI 359 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv 359 (477)
++|++++++++|+..
T Consensus 75 ~~P~~~~~~~~~~~~ 89 (105)
T cd02998 75 GFPTLKFFPKGSTEP 89 (105)
T ss_pred CcCEEEEEeCCCCCc
Confidence 999999997665443
|
The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER |
| >cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-10 Score=94.42 Aligned_cols=69 Identities=19% Similarity=0.342 Sum_probs=57.9
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++++++|+||++||++|+.+.|.+.++.+++++. +.+..|++|.. ..+++.|+|
T Consensus 17 ~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~---~~~~~vd~~~~-----------------------~~~~~~~~v 70 (101)
T cd03003 17 SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV---IRIGAVNCGDD-----------------------RMLCRSQGV 70 (101)
T ss_pred CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc---eEEEEEeCCcc-----------------------HHHHHHcCC
Confidence 4588999999999999999999999999999753 77777777744 247889999
Q ss_pred ccCCeEEEECCCCCcc
Q 011791 184 STLPTLVIIGPDGKTL 199 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~ 199 (477)
+++|+++++ ++|+.+
T Consensus 71 ~~~Pt~~~~-~~g~~~ 85 (101)
T cd03003 71 NSYPSLYVF-PSGMNP 85 (101)
T ss_pred CccCEEEEE-cCCCCc
Confidence 999999999 577654
|
This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. |
| >cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.6e-10 Score=92.62 Aligned_cols=63 Identities=16% Similarity=0.280 Sum_probs=53.8
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
++.++|+||++||++|+.+.|.+.++.+++ + .++++.++.|... .+++.|+|.
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~---~i~~~~vd~d~~~-----------------------~l~~~~~v~ 74 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-D---KLKLEIYDFDEDK-----------------------EKAEKYGVE 74 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C---ceEEEEEeCCcCH-----------------------HHHHHcCCC
Confidence 567899999999999999999999998775 3 3788888887543 688999999
Q ss_pred CcceEEEECC
Q 011791 345 GIPMLVAIGP 354 (477)
Q Consensus 345 ~~Pt~~lid~ 354 (477)
++||+++++.
T Consensus 75 ~vPt~~i~~~ 84 (113)
T cd02975 75 RVPTTIFLQD 84 (113)
T ss_pred cCCEEEEEeC
Confidence 9999999954
|
PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions. |
| >cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.4e-10 Score=92.91 Aligned_cols=77 Identities=17% Similarity=0.169 Sum_probs=61.1
Q ss_pred CCCEEEEEEecCCCccchhhHHHH---HHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (477)
+||+++|+||++||++|+.+.+.+ .++.+.+++ + +.++.|.++.+.. ....+++.
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~--~~~~~vd~~~~~~-------------------~~~~~~~~ 67 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-D--VVLLRADWTKNDP-------------------EITALLKR 67 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-C--eEEEEEecCCCCH-------------------HHHHHHHH
Confidence 478999999999999999999877 567777765 3 8888887764321 12457889
Q ss_pred cCcccCCeEEEECC-CCCccccc
Q 011791 181 FELSTLPTLVIIGP-DGKTLHSN 202 (477)
Q Consensus 181 ~~v~~~P~~~lid~-~G~i~~~~ 202 (477)
|++.++|+++++++ +|+.+.+.
T Consensus 68 ~~i~~~Pti~~~~~~~g~~~~~~ 90 (104)
T cd02953 68 FGVFGPPTYLFYGPGGEPEPLRL 90 (104)
T ss_pred cCCCCCCEEEEECCCCCCCCccc
Confidence 99999999999998 88876554
|
It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. |
| >cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=99.09 E-value=3e-10 Score=91.85 Aligned_cols=74 Identities=23% Similarity=0.468 Sum_probs=58.4
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
++++++|+||++||++|+.+.|.+.++++.++. ..++.++.++.+.. ..+++.|+|
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~-----------------------~~~~~~~~i 69 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKG-DGKVVVAKVDCTAN-----------------------NDLCSEYGV 69 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhcc-CCceEEEEeeccch-----------------------HHHHHhCCC
Confidence 356999999999999999999999999998851 12466666665542 368999999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
+++|++++++++|+.+.+
T Consensus 70 ~~~Pt~~~~~~~~~~~~~ 87 (101)
T cd02961 70 RGYPTIKLFPNGSKEPVK 87 (101)
T ss_pred CCCCEEEEEcCCCccccc
Confidence 999999999877644433
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies |
| >cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.3e-10 Score=93.30 Aligned_cols=68 Identities=10% Similarity=0.041 Sum_probs=56.2
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHH-HHcC
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLA-RYFE 182 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~ 182 (477)
++++++|.|||+||++|+.+.|.+.++.+++++. +.++.|..|.+. .++ +.|+
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~---v~~~~Vd~d~~~-----------------------~l~~~~~~ 81 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ---VLFVAINCWWPQ-----------------------GKCRKQKH 81 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCCh-----------------------HHHHHhcC
Confidence 4689999999999999999999999999999754 677777766443 256 5899
Q ss_pred cccCCeEEEECCCCCc
Q 011791 183 LSTLPTLVIIGPDGKT 198 (477)
Q Consensus 183 v~~~P~~~lid~~G~i 198 (477)
|.++||+.++ ++|+.
T Consensus 82 I~~~PTl~lf-~~g~~ 96 (113)
T cd03006 82 FFYFPVIHLY-YRSRG 96 (113)
T ss_pred CcccCEEEEE-ECCcc
Confidence 9999999999 56664
|
ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. |
| >cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.1e-10 Score=97.21 Aligned_cols=75 Identities=21% Similarity=0.288 Sum_probs=61.5
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++++++|+|||+||++|+.+.|.+.++.+++.+.+ +.++.|++|...+ +++.|+|
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~--v~f~~VDvd~~~~-----------------------la~~~~V 100 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNN--LKFGKIDIGRFPN-----------------------VAEKFRV 100 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCC--eEEEEEECCCCHH-----------------------HHHHcCc
Confidence 35789999999999999999999999999987654 8888888886643 5666777
Q ss_pred cc------CCeEEEECCCCCccccchh
Q 011791 184 ST------LPTLVIIGPDGKTLHSNVA 204 (477)
Q Consensus 184 ~~------~P~~~lid~~G~i~~~~~~ 204 (477)
.. +||++++. +|+.+.+...
T Consensus 101 ~~~~~v~~~PT~ilf~-~Gk~v~r~~G 126 (152)
T cd02962 101 STSPLSKQLPTIILFQ-GGKEVARRPY 126 (152)
T ss_pred eecCCcCCCCEEEEEE-CCEEEEEEec
Confidence 66 99999996 8888776543
|
It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. |
| >cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.06 E-value=7e-10 Score=90.98 Aligned_cols=71 Identities=18% Similarity=0.238 Sum_probs=57.7
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++++|+|||+||++|+.+.|.+.++.+++++. +.+..|..|.. ..+++.|+|.
T Consensus 19 ~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~~-----------------------~~~~~~~~i~ 72 (104)
T cd03004 19 KEPWLVDFYAPWCGPCQALLPELRKAARALKGK---VKVGSVDCQKY-----------------------ESLCQQANIR 72 (104)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCch-----------------------HHHHHHcCCC
Confidence 568999999999999999999999999998543 67766766633 3478899999
Q ss_pred cCCeEEEECCCCCcccc
Q 011791 185 TLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~ 201 (477)
++|+++++..+|+.+.+
T Consensus 73 ~~Pt~~~~~~g~~~~~~ 89 (104)
T cd03004 73 AYPTIRLYPGNASKYHS 89 (104)
T ss_pred cccEEEEEcCCCCCceE
Confidence 99999999866455443
|
This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. |
| >cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus | Back alignment and domain information |
|---|
Probab=99.06 E-value=7e-10 Score=91.05 Aligned_cols=67 Identities=16% Similarity=0.196 Sum_probs=54.7
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++++++|+|||+||++|+.+.|.|.++++.+++.+.++.+..+..+.. ..+++.|++
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~-----------------------~~~~~~~~I 70 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY-----------------------SSIASEFGV 70 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC-----------------------HhHHhhcCC
Confidence 457899999999999999999999999999976554466655655432 246789999
Q ss_pred ccCCeEEEEC
Q 011791 184 STLPTLVIIG 193 (477)
Q Consensus 184 ~~~P~~~lid 193 (477)
.++|++++++
T Consensus 71 ~~~Pt~~l~~ 80 (104)
T cd03000 71 RGYPTIKLLK 80 (104)
T ss_pred ccccEEEEEc
Confidence 9999999995
|
The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. |
| >cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1 | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.8e-10 Score=91.72 Aligned_cols=67 Identities=22% Similarity=0.532 Sum_probs=53.0
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|+||++||++|+.+.|.+.++++.+++. ..+.+..++.+.. .+...+++.
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~------------------------~~~~~~~~~ 72 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD-DNVVIAKMDATAN------------------------DVPSEFVVD 72 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC-CCEEEEEEeCcch------------------------hhhhhccCC
Confidence 689999999999999999999999999998752 2455555555432 356778899
Q ss_pred CcceEEEECCCC
Q 011791 345 GIPMLVAIGPSG 356 (477)
Q Consensus 345 ~~Pt~~lid~~G 356 (477)
++|+++++.+++
T Consensus 73 ~~Pt~~~~~~~~ 84 (104)
T cd02995 73 GFPTILFFPAGD 84 (104)
T ss_pred CCCEEEEEcCCC
Confidence 999999995443
|
PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu |
| >PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.5e-10 Score=94.10 Aligned_cols=95 Identities=19% Similarity=0.276 Sum_probs=64.0
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+||+++++||++||++|+.+.+.+.+..+-......++.++.++++++............. +........+.+.|||
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQ---KNVRLSNKELAQRYGV 80 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCH---SSCHHHHHHHHHHTT-
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccc---hhhhHHHHHHHHHcCC
Confidence 5899999999999999999888887654422221123889999998766544443332111 1222344679999999
Q ss_pred ccCCeEEEECCCCCcccc
Q 011791 184 STLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~ 201 (477)
.++|+++++|++|+++..
T Consensus 81 ~gtPt~~~~d~~G~~v~~ 98 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKIVYR 98 (112)
T ss_dssp -SSSEEEECTTTSCEEEE
T ss_pred CccCEEEEEcCCCCEEEE
Confidence 999999999999998764
|
... |
| >KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.05 E-value=7e-10 Score=90.64 Aligned_cols=70 Identities=19% Similarity=0.362 Sum_probs=57.9
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+|.++|+|+|+||+||+...|.+.++..+|.+ +.++-|++|+ ...+++.++|.
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdvde-----------------------~~~~~~~~~V~ 73 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDVDE-----------------------LEEVAKEFNVK 73 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEeccc-----------------------CHhHHHhcCce
Confidence 69999999999999999999999999999976 4566666664 14478899999
Q ss_pred cCCeEEEECCCCCccccc
Q 011791 185 TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~ 202 (477)
.+||++++ ++|+.+...
T Consensus 74 ~~PTf~f~-k~g~~~~~~ 90 (106)
T KOG0907|consen 74 AMPTFVFY-KGGEEVDEV 90 (106)
T ss_pred EeeEEEEE-ECCEEEEEE
Confidence 99999999 567665554
|
|
| >cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1 | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.1e-10 Score=90.26 Aligned_cols=72 Identities=18% Similarity=0.329 Sum_probs=58.7
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.+|+|+|+|+|+||+||+...|.|.++.++|++. +.++-|.+|+.+ .+++.|+|
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~---~~f~kVDVDev~-----------------------dva~~y~I 66 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM---ASIYLVDVDKVP-----------------------VYTQYFDI 66 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc---eEEEEEeccccH-----------------------HHHHhcCc
Confidence 5799999999999999999999999999999653 566667776543 48899999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
..+|+++++- +|+-+.-+
T Consensus 67 ~amPtfvffk-ngkh~~~d 84 (114)
T cd02986 67 SYIPSTIFFF-NGQHMKVD 84 (114)
T ss_pred eeCcEEEEEE-CCcEEEEe
Confidence 9999999885 56655444
|
Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. |
| >TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.5e-10 Score=112.56 Aligned_cols=71 Identities=18% Similarity=0.393 Sum_probs=58.4
Q ss_pred CCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcC
Q 011791 263 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 342 (477)
Q Consensus 263 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 342 (477)
..++++||+|||+||++|+.+.|.|.++++++++. ++.++.|++|.+.. ....+.|+
T Consensus 369 ~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~--~v~~~kVdvD~~~~---------------------~~~~~~~~ 425 (463)
T TIGR00424 369 ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS--GVKVAKFRADGDQK---------------------EFAKQELQ 425 (463)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC--CcEEEEEECCCCcc---------------------HHHHHHcC
Confidence 36899999999999999999999999999999754 57888888886531 13346899
Q ss_pred CCCcceEEEECCCCc
Q 011791 343 VSGIPMLVAIGPSGR 357 (477)
Q Consensus 343 v~~~Pt~~lid~~G~ 357 (477)
|+++||++||. +|.
T Consensus 426 I~~~PTii~Fk-~g~ 439 (463)
T TIGR00424 426 LGSFPTILFFP-KHS 439 (463)
T ss_pred CCccceEEEEE-CCC
Confidence 99999999994 443
|
This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis. |
| >cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis | Back alignment and domain information |
|---|
Probab=99.04 E-value=8e-10 Score=100.62 Aligned_cols=67 Identities=16% Similarity=0.252 Sum_probs=55.8
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++|||.||++||++|+.+.|.|.+++++|. .+.++-|+++ . ....|+++
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~----~vkFvkI~ad--~------------------------~~~~~~i~ 151 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFP----DTKFVKIIST--Q------------------------CIPNYPDK 151 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCC----CCEEEEEEhH--H------------------------hHhhCCCC
Confidence 4699999999999999999999999999974 2555555544 2 25679999
Q ss_pred CcceEEEECCCCcEEEec
Q 011791 345 GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~~ 362 (477)
++||+++| ++|+++.+.
T Consensus 152 ~lPTlliy-k~G~~v~~i 168 (192)
T cd02988 152 NLPTILVY-RNGDIVKQF 168 (192)
T ss_pred CCCEEEEE-ECCEEEEEE
Confidence 99999999 899999874
|
It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.5e-10 Score=91.25 Aligned_cols=70 Identities=17% Similarity=0.318 Sum_probs=58.8
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.|++++|+|||+||++|+.+.|.+.++++.+.+. +.++.|+.|.+. ...+++.|++
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~v~~~~~~---------------------~~~~~~~~~i 72 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL---VQVAAVDCDEDK---------------------NKPLCGKYGV 72 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC---ceEEEEecCccc---------------------cHHHHHHcCC
Confidence 3688999999999999999999999999998753 778888877532 1457889999
Q ss_pred ccCCeEEEECCCCC
Q 011791 184 STLPTLVIIGPDGK 197 (477)
Q Consensus 184 ~~~P~~~lid~~G~ 197 (477)
.++|+++++++++.
T Consensus 73 ~~~Pt~~~~~~~~~ 86 (109)
T cd03002 73 QGFPTLKVFRPPKK 86 (109)
T ss_pred CcCCEEEEEeCCCc
Confidence 99999999987763
|
MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. |
| >PRK09381 trxA thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.4e-10 Score=91.07 Aligned_cols=71 Identities=18% Similarity=0.342 Sum_probs=59.9
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++++|+||++||++|+.+.|.+.++++++.+. +.++.|++|... .+++.|++.
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~v~ 74 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNP-----------------------GTAPKYGIR 74 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC---cEEEEEECCCCh-----------------------hHHHhCCCC
Confidence 678999999999999999999999999999763 788888777543 256789999
Q ss_pred cCCeEEEECCCCCccccc
Q 011791 185 TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~ 202 (477)
.+|+++++ ++|+++.+.
T Consensus 75 ~~Pt~~~~-~~G~~~~~~ 91 (109)
T PRK09381 75 GIPTLLLF-KNGEVAATK 91 (109)
T ss_pred cCCEEEEE-eCCeEEEEe
Confidence 99999999 588877654
|
|
| >KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.4e-10 Score=112.28 Aligned_cols=113 Identities=20% Similarity=0.310 Sum_probs=80.8
Q ss_pred CcceeccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCce
Q 011791 247 LDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLA 326 (477)
Q Consensus 247 p~f~l~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~ 326 (477)
.+.++.++...+...-.....+||.||||||+||+++.|.+++++..+++.++. |....+|++.+
T Consensus 24 ~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~--i~LakVDat~~------------- 88 (493)
T KOG0190|consen 24 EEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSP--VKLAKVDATEE------------- 88 (493)
T ss_pred ccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCC--ceeEEeecchh-------------
Confidence 344554444445444444678999999999999999999999999999987444 44456676652
Q ss_pred eccCcchhHHHHHhcCCCCcceEEEECCCCcE-EEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCCch
Q 011791 327 LPFGDARKASLSRKFKVSGIPMLVAIGPSGRT-ITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPE 398 (477)
Q Consensus 327 ~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i-v~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 398 (477)
..++.+|+|+++||+-++ ++|+. ....| ++..+.+...|++...+...
T Consensus 89 --------~~~~~~y~v~gyPTlkiF-rnG~~~~~Y~G---------------~r~adgIv~wl~kq~gPa~~ 137 (493)
T KOG0190|consen 89 --------SDLASKYEVRGYPTLKIF-RNGRSAQDYNG---------------PREADGIVKWLKKQSGPASK 137 (493)
T ss_pred --------hhhHhhhcCCCCCeEEEE-ecCCcceeccC---------------cccHHHHHHHHHhccCCCce
Confidence 479999999999999999 89986 33222 34456677777765544443
|
|
| >cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.02 E-value=7e-10 Score=90.49 Aligned_cols=70 Identities=17% Similarity=0.305 Sum_probs=56.0
Q ss_pred EEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccC
Q 011791 107 TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTL 186 (477)
Q Consensus 107 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 186 (477)
.++|+|||+||++|+.+.|.+.++++++++...++.++.|..+.. ..+++.|++.++
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~-----------------------~~~~~~~~v~~~ 74 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH-----------------------RELCSEFQVRGY 74 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC-----------------------hhhHhhcCCCcC
Confidence 489999999999999999999999999987323377776665533 247789999999
Q ss_pred CeEEEECCCCCccc
Q 011791 187 PTLVIIGPDGKTLH 200 (477)
Q Consensus 187 P~~~lid~~G~i~~ 200 (477)
|+++++ ++|+.+.
T Consensus 75 Pt~~~~-~~g~~~~ 87 (102)
T cd03005 75 PTLLLF-KDGEKVD 87 (102)
T ss_pred CEEEEE-eCCCeee
Confidence 999999 5776543
|
Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. |
| >cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-09 Score=90.11 Aligned_cols=71 Identities=15% Similarity=0.298 Sum_probs=57.9
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHH-HcC
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR-YFE 182 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 182 (477)
+||+++|.||++||++|+.+.|.+.++++.+++.+ +.++.|..|.+. ..+++ .|+
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~--~~~~~vd~d~~~----------------------~~~~~~~~~ 75 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSN--VKVAKFNADGEQ----------------------REFAKEELQ 75 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCC--eEEEEEECCccc----------------------hhhHHhhcC
Confidence 46899999999999999999999999999998655 888888777421 12444 589
Q ss_pred cccCCeEEEECCCCCc
Q 011791 183 LSTLPTLVIIGPDGKT 198 (477)
Q Consensus 183 v~~~P~~~lid~~G~i 198 (477)
++++|++++++++++.
T Consensus 76 v~~~Pti~~f~~~~~~ 91 (109)
T cd02993 76 LKSFPTILFFPKNSRQ 91 (109)
T ss_pred CCcCCEEEEEcCCCCC
Confidence 9999999999877653
|
APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red |
| >cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.01 E-value=6e-10 Score=93.35 Aligned_cols=75 Identities=21% Similarity=0.360 Sum_probs=54.7
Q ss_pred CCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 011791 103 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 182 (477)
Q Consensus 103 l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (477)
.+||+|+|+|||+||++|+.+.|.+.+..+.... . ..++.|.+|.+.+. ..+.|+
T Consensus 17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~--~~fv~v~vd~~~~~----------------------~~~~~~ 71 (117)
T cd02959 17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-S--HNFVMVNLEDDEEP----------------------KDEEFS 71 (117)
T ss_pred HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-c--CcEEEEEecCCCCc----------------------hhhhcc
Confidence 3579999999999999999999998887665432 2 23555666644211 223566
Q ss_pred ccc--CCeEEEECCCCCccccc
Q 011791 183 LST--LPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 183 v~~--~P~~~lid~~G~i~~~~ 202 (477)
+.+ +|+++++|++|+++.+.
T Consensus 72 ~~g~~vPt~~f~~~~Gk~~~~~ 93 (117)
T cd02959 72 PDGGYIPRILFLDPSGDVHPEI 93 (117)
T ss_pred cCCCccceEEEECCCCCCchhh
Confidence 655 99999999999987753
|
Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney. |
| >cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.6e-09 Score=88.36 Aligned_cols=68 Identities=22% Similarity=0.305 Sum_probs=54.3
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+|+ ++|+|||+||++|+.+.|.+.++++.++..+ +.+..|..|.+. .+++.|+|
T Consensus 16 ~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~~~~~-----------------------~~~~~~~i 69 (101)
T cd02994 16 EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLG--INVAKVDVTQEP-----------------------GLSGRFFV 69 (101)
T ss_pred CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCC--eEEEEEEccCCH-----------------------hHHHHcCC
Confidence 455 6799999999999999999999998876444 776666665432 36789999
Q ss_pred ccCCeEEEECCCCCc
Q 011791 184 STLPTLVIIGPDGKT 198 (477)
Q Consensus 184 ~~~P~~~lid~~G~i 198 (477)
.++|+++++ ++|++
T Consensus 70 ~~~Pt~~~~-~~g~~ 83 (101)
T cd02994 70 TALPTIYHA-KDGVF 83 (101)
T ss_pred cccCEEEEe-CCCCE
Confidence 999999987 67874
|
TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. |
| >COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.99 E-value=6e-09 Score=88.13 Aligned_cols=114 Identities=20% Similarity=0.272 Sum_probs=89.0
Q ss_pred Cccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC-------ChhHHHHH
Q 011791 247 LDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSFDEF 318 (477)
Q Consensus 247 p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~~~~ 318 (477)
-+|.+ +++|+.+++++++||++||.-.|+-|+.-.+ ...|+.||++|+++ +++|+++.++. +.+++++|
T Consensus 6 yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~~--Gf~VLgFPcNQF~~QEPg~~eEI~~f 82 (162)
T COG0386 6 YDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKDK--GFEVLGFPCNQFGGQEPGSDEEIAKF 82 (162)
T ss_pred ccceeeccCCCCccHHHhCCcEEEEEEcccccCCcHh-HHHHHHHHHHHhhC--CcEEEeccccccccCCCCCHHHHHHH
Confidence 46777 9999999999999999999999999998774 55899999999988 89999999863 56789999
Q ss_pred HhcCCCceeccCcch------hHHHHHhc-----------CCCCcceEEEECCCCcEEEecc
Q 011791 319 FKGMPWLALPFGDAR------KASLSRKF-----------KVSGIPMLVAIGPSGRTITKEA 363 (477)
Q Consensus 319 ~~~~~~~~~p~~~d~------~~~l~~~~-----------~v~~~Pt~~lid~~G~iv~~~~ 363 (477)
.+.+-..+||+.... ...|.+.+ .|..-=+-+|||++|+||.|..
T Consensus 83 C~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~ 144 (162)
T COG0386 83 CQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFS 144 (162)
T ss_pred HHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeC
Confidence 997766888875321 11122221 1222237899999999999965
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.8e-10 Score=103.29 Aligned_cols=71 Identities=23% Similarity=0.385 Sum_probs=61.7
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+-++|+|+||++||+||+..+|.|.++...|+++ |.+.-|++|.++. ++..|||
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~---f~LakvN~D~~p~-----------------------vAaqfgi 95 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK---FKLAKVNCDAEPM-----------------------VAAQFGV 95 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc---eEEEEecCCcchh-----------------------HHHHhCc
Confidence 3479999999999999999999999999999987 8888888886643 7899999
Q ss_pred ccCCeEEEECCCCCcccc
Q 011791 184 STLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~ 201 (477)
++||+.+++- +|+.+..
T Consensus 96 qsIPtV~af~-dGqpVdg 112 (304)
T COG3118 96 QSIPTVYAFK-DGQPVDG 112 (304)
T ss_pred CcCCeEEEee-CCcCccc
Confidence 9999999884 7776653
|
|
| >PRK10996 thioredoxin 2; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.9e-09 Score=93.38 Aligned_cols=72 Identities=19% Similarity=0.381 Sum_probs=59.4
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++|+++|+||++||++|+.+.|.|.++++++.+. +.++.|..|.. ..+++.|+|
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~-----------------------~~l~~~~~V 104 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK---VRFVKVNTEAE-----------------------RELSARFRI 104 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEEeCCCC-----------------------HHHHHhcCC
Confidence 4799999999999999999999999999887653 77777766543 347889999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|++++++ +|+++...
T Consensus 105 ~~~Ptlii~~-~G~~v~~~ 122 (139)
T PRK10996 105 RSIPTIMIFK-NGQVVDML 122 (139)
T ss_pred CccCEEEEEE-CCEEEEEE
Confidence 9999999885 88877653
|
|
| >cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.6e-09 Score=88.25 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=56.2
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCC---CcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKG---ESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 181 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g---~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (477)
+++++|+|||+||++|+.+.|.+.++++.+++.. .++.++.|..|.. ..+++.|
T Consensus 18 ~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-----------------------~~l~~~~ 74 (108)
T cd02996 18 AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-----------------------SDIADRY 74 (108)
T ss_pred CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-----------------------HHHHHhC
Confidence 5789999999999999999999999999886431 1366666666543 3478999
Q ss_pred CcccCCeEEEECCCCCcc
Q 011791 182 ELSTLPTLVIIGPDGKTL 199 (477)
Q Consensus 182 ~v~~~P~~~lid~~G~i~ 199 (477)
+|+++|+++++ ++|++.
T Consensus 75 ~v~~~Ptl~~~-~~g~~~ 91 (108)
T cd02996 75 RINKYPTLKLF-RNGMMM 91 (108)
T ss_pred CCCcCCEEEEE-eCCcCc
Confidence 99999999998 577743
|
It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. |
| >COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-08 Score=94.45 Aligned_cols=134 Identities=23% Similarity=0.456 Sum_probs=104.2
Q ss_pred ccee-ccCCCceecccCCCCEEEEEEeCCCCh-hhHhHhHHHHHHHHHHH-hcCCcEEEEEEeCCCC---hhHHHHHHh-
Q 011791 248 DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCP-PCRAFLPKLIDAYKKIK-ERNESLEVVFISSDRD---QTSFDEFFK- 320 (477)
Q Consensus 248 ~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~-~~~~~~~iv~i~~d~~---~~~~~~~~~- 320 (477)
+|.+ +.+|+.+++..++||+++|+|..+.|| .|..++..|.++.+++. ....++++++|++|.+ ++.+++|..
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~ 128 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL 128 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence 7888 999999999999999999999999998 99999999999999998 5567899999999864 456777777
Q ss_pred cC--CCceeccCcchhHHHHHhcCCCC--c-------------ceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHH
Q 011791 321 GM--PWLALPFGDARKASLSRKFKVSG--I-------------PMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMK 383 (477)
Q Consensus 321 ~~--~~~~~p~~~d~~~~l~~~~~v~~--~-------------Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~ 383 (477)
.. +|..+....+...++++.|+|.. + ..++++|++|+++.... ++.. -+
T Consensus 129 ~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~------~~~~--------~~ 194 (207)
T COG1999 129 NFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYD------YGEP--------PE 194 (207)
T ss_pred cCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEec------CCCC--------hH
Confidence 22 25556655566778889888863 2 25899999999988742 2211 25
Q ss_pred HHHHHHHHHHcC
Q 011791 384 EIDGQYNEMAKG 395 (477)
Q Consensus 384 ~l~~~~~~~~~~ 395 (477)
++.+.++.++++
T Consensus 195 ~i~~~l~~l~~~ 206 (207)
T COG1999 195 EIAADLKKLLKE 206 (207)
T ss_pred HHHHHHHHHhhc
Confidence 666777766543
|
|
| >cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.8e-09 Score=89.79 Aligned_cols=99 Identities=12% Similarity=0.187 Sum_probs=67.2
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHH---HHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHh
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLI---DAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 340 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 340 (477)
++|+|+|+|++.||++|+.+...+- ++.+.+.+. +-+|-+..|.... .+. .
T Consensus 22 ~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~---Fv~V~l~~d~td~----------------------~~~-~ 75 (130)
T cd02960 22 SNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQED---FIMLNLVHETTDK----------------------NLS-P 75 (130)
T ss_pred CCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhC---eEEEEEEeccCCC----------------------CcC-c
Confidence 4899999999999999999887652 233333332 4334444442210 000 1
Q ss_pred cCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHH
Q 011791 341 FKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMA 393 (477)
Q Consensus 341 ~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 393 (477)
.+ .++||++|+|++|+++.+- ..+++...+.+.+.+++.|.+-+++.+
T Consensus 76 ~g-~~vPtivFld~~g~vi~~i----~Gy~~~~~~~y~~~~~~~~~~~m~~a~ 123 (130)
T cd02960 76 DG-QYVPRIMFVDPSLTVRADI----TGRYSNRLYTYEPADIPLLIENMKKAL 123 (130)
T ss_pred cC-cccCeEEEECCCCCCcccc----cccccCccceeCcCcHHHHHHHHHHHH
Confidence 23 5899999999999998763 446777777788888888888777644
|
They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19. |
| >TIGR00411 redox_disulf_1 small redox-active disulfide protein 1 | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.7e-09 Score=80.70 Aligned_cols=62 Identities=19% Similarity=0.406 Sum_probs=50.6
Q ss_pred EEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcc
Q 011791 268 ILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIP 347 (477)
Q Consensus 268 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P 347 (477)
.+..||++||++|+.+.|.+++++++++.. +.++.|+++.+. ++.+.|++.++|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~v~~vP 55 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA---VEVEYINVMENP-----------------------QKAMEYGIMAVP 55 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc---eEEEEEeCccCH-----------------------HHHHHcCCccCC
Confidence 356899999999999999999999988643 777777776544 467889999999
Q ss_pred eEEEECCCCcE
Q 011791 348 MLVAIGPSGRT 358 (477)
Q Consensus 348 t~~lid~~G~i 358 (477)
++++ +|+.
T Consensus 56 t~~~---~g~~ 63 (82)
T TIGR00411 56 AIVI---NGDV 63 (82)
T ss_pred EEEE---CCEE
Confidence 9886 5654
|
This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin. |
| >PLN02309 5'-adenylylsulfate reductase | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.3e-09 Score=108.30 Aligned_cols=68 Identities=19% Similarity=0.447 Sum_probs=56.0
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHH-hcC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR-KFK 342 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~-~~~ 342 (477)
.++++||+|||+||++|+.+.|.+.+++++|+.. ++.++.|++|.+. ..++. .|+
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~--~V~f~kVD~d~~~----------------------~~la~~~~~ 419 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS--GVKVAKFRADGDQ----------------------KEFAKQELQ 419 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC--CeEEEEEECCCcc----------------------hHHHHhhCC
Confidence 5899999999999999999999999999998754 5778777777332 24564 699
Q ss_pred CCCcceEEEECCC
Q 011791 343 VSGIPMLVAIGPS 355 (477)
Q Consensus 343 v~~~Pt~~lid~~ 355 (477)
|+++||++||.++
T Consensus 420 I~~~PTil~f~~g 432 (457)
T PLN02309 420 LGSFPTILLFPKN 432 (457)
T ss_pred CceeeEEEEEeCC
Confidence 9999999999443
|
|
| >COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.9e-09 Score=94.98 Aligned_cols=115 Identities=23% Similarity=0.464 Sum_probs=94.4
Q ss_pred Cc-eecCCCCeEecCCCCCCEEEEEEecCCCc-cchhhHHHHHHHHHHHh-cCCCcEEEEEEEcCC---CHHHHHHhhc-
Q 011791 88 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYK-ASAEFTPRLVEVYEKLK-GKGESFEIVLISLDD---EEESFKRDLG- 160 (477)
Q Consensus 88 ~f-l~~~~g~~v~ls~l~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~-~~g~~~~vv~is~D~---~~~~~~~~~~- 160 (477)
+| +.+.+|+++++..++||+++|+|..+.|| .|..++..|..+.+++. ..+.++++++|++|. +++..+++..
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~ 128 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL 128 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence 56 55999999999999999999999999997 89999999999999999 667789999999985 3556677777
Q ss_pred CC--CCccccCCchhHHHHHHHcCccc---------------CCeEEEECCCCCccccc
Q 011791 161 SM--PWLALPFKDKSREKLARYFELST---------------LPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 161 ~~--~~~~~~~~~~~~~~l~~~~~v~~---------------~P~~~lid~~G~i~~~~ 202 (477)
.. .|..+........++++.|++.. ...++++|++|+++..-
T Consensus 129 ~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~ 187 (207)
T COG1999 129 NFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTY 187 (207)
T ss_pred cCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEe
Confidence 22 37777776667778888888742 34678999999887654
|
|
| >cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.8e-09 Score=85.50 Aligned_cols=72 Identities=17% Similarity=0.326 Sum_probs=59.8
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.+++|+++||++||++|+...|.+.++.+++.+. +.++.|..|.+. .+.+.+++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~---v~~~~id~d~~~-----------------------~l~~~~~v 65 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGA---VHFVEIDIDEDQ-----------------------EIAEAAGI 65 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCCCH-----------------------HHHHHCCC
Confidence 4689999999999999999999999999988653 777777776443 36789999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|++++++ +|+++.+.
T Consensus 66 ~~vPt~~i~~-~g~~v~~~ 83 (97)
T cd02949 66 MGTPTVQFFK-DKELVKEI 83 (97)
T ss_pred eeccEEEEEE-CCeEEEEE
Confidence 9999999995 78877554
|
The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. |
| >cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.7e-09 Score=81.88 Aligned_cols=69 Identities=25% Similarity=0.597 Sum_probs=57.7
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|+||++||++|+.+.+.+.++.++ . .++.++.++.+... .+.+.|++.
T Consensus 10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~---~~~~~~~i~~~~~~-----------------------~~~~~~~v~ 62 (93)
T cd02947 10 AKPVVVDFWAPWCGPCKAIAPVLEELAEE-Y---PKVKFVKVDVDENP-----------------------ELAEEYGVR 62 (93)
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHH-C---CCceEEEEECCCCh-----------------------hHHHhcCcc
Confidence 48899999999999999999999998877 2 35788888877543 578899999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++|+++++ ++|+++..
T Consensus 63 ~~P~~~~~-~~g~~~~~ 78 (93)
T cd02947 63 SIPTFLFF-KNGKEVDR 78 (93)
T ss_pred cccEEEEE-ECCEEEEE
Confidence 99999999 57776655
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio |
| >PLN00410 U5 snRNP protein, DIM1 family; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.1e-09 Score=91.02 Aligned_cols=72 Identities=15% Similarity=0.189 Sum_probs=58.3
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.+++|+|+|||+||+||+...|.|.++.+++++. +.|+-|.+|..+ .+++.|+|
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~---~~~~kVDVDe~~-----------------------dla~~y~I 75 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF---AVIYLVDITEVP-----------------------DFNTMYEL 75 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCCCH-----------------------HHHHHcCc
Confidence 3589999999999999999999999999999775 677788888664 38899999
Q ss_pred ccCCeEEEECCCCC-cccc
Q 011791 184 STLPTLVIIGPDGK-TLHS 201 (477)
Q Consensus 184 ~~~P~~~lid~~G~-i~~~ 201 (477)
.+.|+++++=++|. .+.+
T Consensus 76 ~~~~t~~~ffk~g~~~vd~ 94 (142)
T PLN00410 76 YDPCTVMFFFRNKHIMIDL 94 (142)
T ss_pred cCCCcEEEEEECCeEEEEE
Confidence 98877774445776 4443
|
|
| >cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1 | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.4e-09 Score=89.21 Aligned_cols=80 Identities=16% Similarity=0.166 Sum_probs=62.3
Q ss_pred CCCEEEEEEec-------CCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHH
Q 011791 104 EGKTIGLYFSM-------SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREK 176 (477)
Q Consensus 104 ~gk~vll~F~a-------~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (477)
+|++|+|+||| +||+||+...|.|.++.+++++. +.++-|.+|.... ..+....
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~---v~fv~Vdvd~~~~----------------w~d~~~~ 80 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPED---CVFIYCDVGDRPY----------------WRDPNNP 80 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCC---CEEEEEEcCCccc----------------ccCcchh
Confidence 57899999999 99999999999999999998743 6778888775431 0111245
Q ss_pred HHHHcCcc-cCCeEEEECCCCCccccc
Q 011791 177 LARYFELS-TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 177 l~~~~~v~-~~P~~~lid~~G~i~~~~ 202 (477)
+...|+|. ++||+++++..++++..+
T Consensus 81 ~~~~~~I~~~iPT~~~~~~~~~l~~~~ 107 (119)
T cd02952 81 FRTDPKLTTGVPTLLRWKTPQRLVEDE 107 (119)
T ss_pred hHhccCcccCCCEEEEEcCCceecchh
Confidence 77899998 999999997666666554
|
TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases. |
| >cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.2e-09 Score=86.88 Aligned_cols=71 Identities=21% Similarity=0.235 Sum_probs=54.9
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++++|+||++||++|+.+.|.+.++.+++++....+.+..|..+.+. ...+++.|+++
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~---------------------~~~~~~~~~i~ 77 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE---------------------NVALCRDFGVT 77 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh---------------------hHHHHHhCCCC
Confidence 379999999999999999999999999998754323555555443221 13578899999
Q ss_pred cCCeEEEECCCC
Q 011791 185 TLPTLVIIGPDG 196 (477)
Q Consensus 185 ~~P~~~lid~~G 196 (477)
++|+++++.+..
T Consensus 78 ~~Pt~~lf~~~~ 89 (114)
T cd02992 78 GYPTLRYFPPFS 89 (114)
T ss_pred CCCEEEEECCCC
Confidence 999999997654
|
QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen. |
| >KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.90 E-value=5e-09 Score=97.79 Aligned_cols=95 Identities=19% Similarity=0.368 Sum_probs=81.2
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
...|+|.|||.||+.++.+.|.+.+.+++++++.++-++|+.++|++.+ ..++.+|.|+
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e---------------------~~ia~ky~I~ 71 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE---------------------DDIADKYHIN 71 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh---------------------hHHhhhhccc
Confidence 5689999999999999999999999999999988888999999999874 4799999999
Q ss_pred CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHc
Q 011791 345 GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAK 394 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 394 (477)
.+||+-++ .+|.+..+.- .| .+.++.|.+.+++.+.
T Consensus 72 KyPTlKvf-rnG~~~~rEY------Rg-------~RsVeaL~efi~kq~s 107 (375)
T KOG0912|consen 72 KYPTLKVF-RNGEMMKREY------RG-------QRSVEALIEFIEKQLS 107 (375)
T ss_pred cCceeeee-eccchhhhhh------cc-------chhHHHHHHHHHHHhc
Confidence 99999999 8999888642 22 4556777777776654
|
|
| >PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.5e-09 Score=110.46 Aligned_cols=76 Identities=18% Similarity=0.445 Sum_probs=58.8
Q ss_pred cCCCCEEEEEEeCCCChhhHhHhHHH---HHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHH
Q 011791 262 DLAGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLS 338 (477)
Q Consensus 262 ~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~ 338 (477)
..+||+|+|+|||+||++|+.+.+.. .++.++++ ++.++.++++.+.+ ...++.
T Consensus 471 ~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~----~~~~v~vDvt~~~~-------------------~~~~l~ 527 (571)
T PRK00293 471 KGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA----DTVLLQADVTANNA-------------------EDVALL 527 (571)
T ss_pred HhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc----CCEEEEEECCCCCh-------------------hhHHHH
Confidence 34589999999999999999998764 45555553 36677777664321 134788
Q ss_pred HhcCCCCcceEEEECCCCcEEE
Q 011791 339 RKFKVSGIPMLVAIGPSGRTIT 360 (477)
Q Consensus 339 ~~~~v~~~Pt~~lid~~G~iv~ 360 (477)
++|++.++||++++|++|+++.
T Consensus 528 ~~~~v~g~Pt~~~~~~~G~~i~ 549 (571)
T PRK00293 528 KHYNVLGLPTILFFDAQGQEIP 549 (571)
T ss_pred HHcCCCCCCEEEEECCCCCCcc
Confidence 9999999999999999999863
|
|
| >PTZ00051 thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.7e-09 Score=84.47 Aligned_cols=71 Identities=13% Similarity=0.246 Sum_probs=56.0
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
++.++|+||++||++|+.+.|.+.++.+++.+ +.++.|..+.. ..+++.|++.
T Consensus 18 ~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~----~~~~~vd~~~~-----------------------~~~~~~~~v~ 70 (98)
T PTZ00051 18 NELVIVDFYAEWCGPCKRIAPFYEECSKEYTK----MVFVKVDVDEL-----------------------SEVAEKENIT 70 (98)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC----cEEEEEECcch-----------------------HHHHHHCCCc
Confidence 57899999999999999999999999887642 45555544322 3578899999
Q ss_pred cCCeEEEECCCCCccccch
Q 011791 185 TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~~ 203 (477)
++|+++++ ++|+++.+..
T Consensus 71 ~~Pt~~~~-~~g~~~~~~~ 88 (98)
T PTZ00051 71 SMPTFKVF-KNGSVVDTLL 88 (98)
T ss_pred eeeEEEEE-eCCeEEEEEe
Confidence 99998777 6888876653
|
|
| >cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.1e-09 Score=83.73 Aligned_cols=71 Identities=17% Similarity=0.257 Sum_probs=56.0
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++|+|+||++||++|+.+.|.|.++.+++.. ++.++.|..+.. ..+++.|++.
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~---~i~~~~vd~~~~-----------------------~~~~~~~~i~ 67 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP---SVLFLSIEAEEL-----------------------PEISEKFEIT 67 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC---ceEEEEEccccC-----------------------HHHHHhcCCc
Confidence 58999999999999999999999999988722 255555543321 3478899999
Q ss_pred cCCeEEEECCCCCccccc
Q 011791 185 TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~ 202 (477)
++|++++++ +|+++.+.
T Consensus 68 ~~Pt~~~~~-~g~~~~~~ 84 (97)
T cd02984 68 AVPTFVFFR-NGTIVDRV 84 (97)
T ss_pred cccEEEEEE-CCEEEEEE
Confidence 999999996 78877654
|
PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. |
| >TIGR01126 pdi_dom protein disulfide-isomerase domain | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.3e-09 Score=83.94 Aligned_cols=70 Identities=20% Similarity=0.299 Sum_probs=57.4
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++++++|+||++||++|+.+.+.+.++.+.+++.+ ++.++.+..|.. ..+++.|++
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~-----------------------~~~~~~~~i 67 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDP-DIVLAKVDATAE-----------------------KDLASRFGV 67 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCC-ceEEEEEEccch-----------------------HHHHHhCCC
Confidence 57899999999999999999999999999987653 366555555432 447889999
Q ss_pred ccCCeEEEECCCCC
Q 011791 184 STLPTLVIIGPDGK 197 (477)
Q Consensus 184 ~~~P~~~lid~~G~ 197 (477)
.++|+++++++++.
T Consensus 68 ~~~P~~~~~~~~~~ 81 (102)
T TIGR01126 68 SGFPTIKFFPKGKK 81 (102)
T ss_pred CcCCEEEEecCCCc
Confidence 99999999998775
|
This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK. |
| >cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO | Back alignment and domain information |
|---|
Probab=98.87 E-value=8e-09 Score=84.53 Aligned_cols=73 Identities=21% Similarity=0.374 Sum_probs=61.3
Q ss_pred CCCEEEEEEecCC--CccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 011791 104 EGKTIGLYFSMSS--YKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 181 (477)
Q Consensus 104 ~gk~vll~F~a~w--C~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (477)
.|..++|+||++| ||+|+...|.|.++.++|.++ +.++-|..|.+. .++..|
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~---v~f~kVdid~~~-----------------------~la~~f 79 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR---FRAAVVGRADEQ-----------------------ALAARF 79 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc---EEEEEEECCCCH-----------------------HHHHHc
Confidence 3567899999997 999999999999999999876 677777777553 488999
Q ss_pred CcccCCeEEEECCCCCccccch
Q 011791 182 ELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 182 ~v~~~P~~~lid~~G~i~~~~~ 203 (477)
+|.++||++++. +|+++.+..
T Consensus 80 ~V~sIPTli~fk-dGk~v~~~~ 100 (111)
T cd02965 80 GVLRTPALLFFR-DGRYVGVLA 100 (111)
T ss_pred CCCcCCEEEEEE-CCEEEEEEe
Confidence 999999999996 788877653
|
They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway. |
| >KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-07 Score=87.26 Aligned_cols=114 Identities=18% Similarity=0.301 Sum_probs=92.1
Q ss_pred eecCCCCeEecCCCCCCEEEEEEecCCCc-cchhhHHHHHHHHHHHhcC-CCcEEEEEEEcCC---CHHHHHHhhcCCC-
Q 011791 90 VISSDGRKISVSDLEGKTIGLYFSMSSYK-ASAEFTPRLVEVYEKLKGK-GESFEIVLISLDD---EEESFKRDLGSMP- 163 (477)
Q Consensus 90 l~~~~g~~v~ls~l~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~-g~~~~vv~is~D~---~~~~~~~~~~~~~- 163 (477)
|+|.+|+.+.-.++.||+++|||-.+.|| .|..++..|.++.+.+.++ |.+..-|||++|. +.+...++++...
T Consensus 124 L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~p 203 (280)
T KOG2792|consen 124 LVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHP 203 (280)
T ss_pred EEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcCh
Confidence 66999999999999999999999999998 8999999999999998865 5556689999996 6677888888653
Q ss_pred -CccccCCchhHHHHHHHcCccc---------------CCeEEEECCCCCccccch
Q 011791 164 -WLALPFKDKSREKLARYFELST---------------LPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 164 -~~~~~~~~~~~~~l~~~~~v~~---------------~P~~~lid~~G~i~~~~~ 203 (477)
.+.+.-..+.-..+++.|.|-- .=.++||||+|..+...+
T Consensus 204 kllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~G 259 (280)
T KOG2792|consen 204 KLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYG 259 (280)
T ss_pred hhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhc
Confidence 4555555566678899998722 225789999998775443
|
|
| >KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.9e-08 Score=92.07 Aligned_cols=135 Identities=22% Similarity=0.358 Sum_probs=103.4
Q ss_pred Cccee-ccCCCceecccCCCCEEEEEEeCCCCh-hhHhHhHHHHHHHHHHHhc-CCcEEEEEEeCCC---ChhHHHHHHh
Q 011791 247 LDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCP-PCRAFLPKLIDAYKKIKER-NESLEVVFISSDR---DQTSFDEFFK 320 (477)
Q Consensus 247 p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~-~~~~~iv~i~~d~---~~~~~~~~~~ 320 (477)
-.|.| +.+|+.++-.+|.||++||||..+.|| .|-.++..|.++.+++.++ +..+.-+||++|. +.+.+++|++
T Consensus 120 GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~ 199 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVS 199 (280)
T ss_pred CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHH
Confidence 35777 999999999999999999999999999 8999999999999998865 2233468999987 5678889999
Q ss_pred cCC--CceeccCcchhHHHHHhcCCC--Ccc-------------eEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHH
Q 011791 321 GMP--WLALPFGDARKASLSRKFKVS--GIP-------------MLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMK 383 (477)
Q Consensus 321 ~~~--~~~~p~~~d~~~~l~~~~~v~--~~P-------------t~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~ 383 (477)
+.. .+.++-..+.-..+++.|.|. ..| .++||||+|+.+...|++ .+.+
T Consensus 200 eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN--------------~~~~ 265 (280)
T KOG2792|consen 200 EFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRN--------------YDAD 265 (280)
T ss_pred hcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhccc--------------CCHH
Confidence 774 355555556667889999884 223 479999999998765532 2235
Q ss_pred HHHHHHHHHHcC
Q 011791 384 EIDGQYNEMAKG 395 (477)
Q Consensus 384 ~l~~~~~~~~~~ 395 (477)
++.+.|.+.+..
T Consensus 266 ~~~~~I~~~v~~ 277 (280)
T KOG2792|consen 266 ELADSILKHVAS 277 (280)
T ss_pred HHHHHHHHHHHh
Confidence 566666655443
|
|
| >PTZ00443 Thioredoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-08 Score=94.82 Aligned_cols=69 Identities=19% Similarity=0.297 Sum_probs=55.8
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++++|+|||+||++|+.+.|.+.++++++++. +.+..|..+.. ..+++.|+|.
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~---v~~~~VD~~~~-----------------------~~l~~~~~I~ 105 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ---VNVADLDATRA-----------------------LNLAKRFAIK 105 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEecCccc-----------------------HHHHHHcCCC
Confidence 578999999999999999999999999998753 55555544322 3478899999
Q ss_pred cCCeEEEECCCCCccc
Q 011791 185 TLPTLVIIGPDGKTLH 200 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~ 200 (477)
++|++++++ +|+.+.
T Consensus 106 ~~PTl~~f~-~G~~v~ 120 (224)
T PTZ00443 106 GYPTLLLFD-KGKMYQ 120 (224)
T ss_pred cCCEEEEEE-CCEEEE
Confidence 999999998 677554
|
|
| >cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.6e-08 Score=82.66 Aligned_cols=64 Identities=20% Similarity=0.309 Sum_probs=55.4
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
|+++++.|+++||++|..+.|.+.+++++++++ +.++.|+.|.. ..+++.|++.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~---v~f~~vd~~~~-----------------------~~~~~~~~i~ 65 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK---LLFVVVDADDF-----------------------GRHLEYFGLK 65 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe---EEEEEEchHhh-----------------------HHHHHHcCCC
Confidence 789999999999999999999999999999865 66776666543 2588899999
Q ss_pred --CcceEEEECC
Q 011791 345 --GIPMLVAIGP 354 (477)
Q Consensus 345 --~~Pt~~lid~ 354 (477)
++|++++++.
T Consensus 66 ~~~~P~~~~~~~ 77 (103)
T cd02982 66 EEDLPVIAIINL 77 (103)
T ss_pred hhhCCEEEEEec
Confidence 9999999965
|
Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w |
| >cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-08 Score=83.12 Aligned_cols=74 Identities=15% Similarity=0.276 Sum_probs=55.9
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++++++|+||++||++|+.+.|.+.++.+.+++.+ .+.++.|..+.+ ....+++.|++
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~id~~~~---------------------~~~~~~~~~~i 73 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDG-KGVLAAVDCTKP---------------------EHDALKEEYNV 73 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCC-ceEEEEEECCCC---------------------ccHHHHHhCCC
Confidence 35789999999999999999999999999987533 255555554431 12457889999
Q ss_pred ccCCeEEEECCCCCccc
Q 011791 184 STLPTLVIIGPDGKTLH 200 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~ 200 (477)
.++|+++++. +|+++.
T Consensus 74 ~~~Pt~~~~~-~g~~~~ 89 (104)
T cd02997 74 KGFPTFKYFE-NGKFVE 89 (104)
T ss_pred ccccEEEEEe-CCCeeE
Confidence 9999988775 677543
|
PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. |
| >cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.8e-08 Score=83.73 Aligned_cols=82 Identities=18% Similarity=0.125 Sum_probs=56.6
Q ss_pred CCCEEEEEEecCCCccchhhHHHH---HHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (477)
++|+|+|+|+|+||++|+.+.+.. .++.+.+.+. |.+|-|..+..++..+.+ .......
T Consensus 14 ~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~---fv~VkvD~~~~~~~~~~~---------------~~~~~~~ 75 (124)
T cd02955 14 EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNEN---FVPIKVDREERPDVDKIY---------------MNAAQAM 75 (124)
T ss_pred cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCC---EEEEEEeCCcCcHHHHHH---------------HHHHHHh
Confidence 469999999999999999876522 2455555443 777766665543221111 1123346
Q ss_pred cCcccCCeEEEECCCCCccccch
Q 011791 181 FELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 181 ~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
|++.++|+++++|++|++++...
T Consensus 76 ~~~~G~Pt~vfl~~~G~~~~~~~ 98 (124)
T cd02955 76 TGQGGWPLNVFLTPDLKPFFGGT 98 (124)
T ss_pred cCCCCCCEEEEECCCCCEEeeee
Confidence 79999999999999999998763
|
The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation. |
| >cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-08 Score=84.96 Aligned_cols=69 Identities=20% Similarity=0.372 Sum_probs=55.4
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++++|+||++||++|+.+.|.|.++.+++.+ +.++-|..+.. .+++.|+|.
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~----v~f~~vd~~~~------------------------~l~~~~~i~ 75 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE----TKFVKINAEKA------------------------FLVNYLDIK 75 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC----cEEEEEEchhh------------------------HHHHhcCCC
Confidence 57899999999999999999999999998853 44554544311 478899999
Q ss_pred cCCeEEEECCCCCccccc
Q 011791 185 TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~ 202 (477)
++|+++++. +|+.+.+.
T Consensus 76 ~~Pt~~~f~-~G~~v~~~ 92 (113)
T cd02957 76 VLPTLLVYK-NGELIDNI 92 (113)
T ss_pred cCCEEEEEE-CCEEEEEE
Confidence 999999885 78877654
|
Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te |
| >cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.8e-08 Score=82.20 Aligned_cols=65 Identities=17% Similarity=0.282 Sum_probs=54.0
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++++|+||++||++|+.+.|.+.++++++++. +.++.+..|.. ..+++.|++.
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~id~~~~-----------------------~~~~~~~~i~ 71 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI---VKVGAVDADVH-----------------------QSLAQQYGVR 71 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---ceEEEEECcch-----------------------HHHHHHCCCC
Confidence 467999999999999999999999999988754 66776765532 3478899999
Q ss_pred cCCeEEEECCC
Q 011791 185 TLPTLVIIGPD 195 (477)
Q Consensus 185 ~~P~~~lid~~ 195 (477)
++|++++++.+
T Consensus 72 ~~P~~~~~~~~ 82 (103)
T cd03001 72 GFPTIKVFGAG 82 (103)
T ss_pred ccCEEEEECCC
Confidence 99999999754
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. |
| >TIGR01068 thioredoxin thioredoxin | Back alignment and domain information |
|---|
Probab=98.80 E-value=2e-08 Score=81.39 Aligned_cols=70 Identities=21% Similarity=0.416 Sum_probs=57.4
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
++.++|+||++||++|+.+.+.+.++.+.+.+. +.++.|..|.+. .+.+.|++.
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~v~ 67 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK---VKFVKLNVDENP-----------------------DIAAKYGIR 67 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC---eEEEEEECCCCH-----------------------HHHHHcCCC
Confidence 468999999999999999999999999888643 778777766442 367899999
Q ss_pred cCCeEEEECCCCCcccc
Q 011791 185 TLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~ 201 (477)
.+|+++++ ++|+.+..
T Consensus 68 ~~P~~~~~-~~g~~~~~ 83 (101)
T TIGR01068 68 SIPTLLLF-KNGKEVDR 83 (101)
T ss_pred cCCEEEEE-eCCcEeee
Confidence 99999999 57775543
|
Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. |
| >cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.3e-08 Score=83.25 Aligned_cols=71 Identities=14% Similarity=0.224 Sum_probs=58.1
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++++|+|+||++||++|+...|.|.++.+++.+ +.++-|..|.. ..+++.|++
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~----i~f~~Vd~~~~-----------------------~~l~~~~~v 73 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE----TKFIKVNAEKA-----------------------PFLVEKLNI 73 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC----CEEEEEEcccC-----------------------HHHHHHCCC
Confidence 357899999999999999999999999988753 56666666644 347889999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
..+|+++++. +|+.+.+.
T Consensus 74 ~~vPt~l~fk-~G~~v~~~ 91 (113)
T cd02989 74 KVLPTVILFK-NGKTVDRI 91 (113)
T ss_pred ccCCEEEEEE-CCEEEEEE
Confidence 9999999986 78777654
|
The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. |
| >cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5 | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.3e-08 Score=81.77 Aligned_cols=70 Identities=16% Similarity=0.263 Sum_probs=56.2
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++++|+||++||++|+.+.|.+.++.+.++.. .++.++.+..+.+ ...+++.|++.
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~----------------------~~~~~~~~~i~ 74 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANE-DDVVIAKVDADEA----------------------NKDLAKKYGVS 74 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCC-CCEEEEEEECCCc----------------------chhhHHhCCCC
Confidence 578999999999999999999999999998733 2366666655541 13478899999
Q ss_pred cCCeEEEECCCCC
Q 011791 185 TLPTLVIIGPDGK 197 (477)
Q Consensus 185 ~~P~~~lid~~G~ 197 (477)
++|++++++++|+
T Consensus 75 ~~P~~~~~~~~~~ 87 (105)
T cd02998 75 GFPTLKFFPKGST 87 (105)
T ss_pred CcCEEEEEeCCCC
Confidence 9999999987764
|
The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER |
| >cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle | Back alignment and domain information |
|---|
Probab=98.78 E-value=2e-08 Score=84.03 Aligned_cols=70 Identities=11% Similarity=0.184 Sum_probs=55.9
Q ss_pred CEEEEEEecCCCcc--ch--hhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 011791 106 KTIGLYFSMSSYKA--SA--EFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 181 (477)
Q Consensus 106 k~vll~F~a~wC~~--C~--~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (477)
.+++++||++||+| |+ ...|.+.++..++-+.+ ++.++-|.+|.+. .+++.|
T Consensus 28 ~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~-~v~~~kVD~d~~~-----------------------~La~~~ 83 (120)
T cd03065 28 VLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK-GIGFGLVDSKKDA-----------------------KVAKKL 83 (120)
T ss_pred ceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC-CCEEEEEeCCCCH-----------------------HHHHHc
Confidence 58999999999988 99 77788888888873221 2777778777553 489999
Q ss_pred CcccCCeEEEECCCCCccc
Q 011791 182 ELSTLPTLVIIGPDGKTLH 200 (477)
Q Consensus 182 ~v~~~P~~~lid~~G~i~~ 200 (477)
||.++||++++. +|+++.
T Consensus 84 ~I~~iPTl~lfk-~G~~v~ 101 (120)
T cd03065 84 GLDEEDSIYVFK-DDEVIE 101 (120)
T ss_pred CCccccEEEEEE-CCEEEE
Confidence 999999999996 788664
|
It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2 |
| >KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.3e-09 Score=97.25 Aligned_cols=91 Identities=15% Similarity=0.263 Sum_probs=65.4
Q ss_pred CCCcceeccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCC
Q 011791 245 GDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW 324 (477)
Q Consensus 245 ~~p~f~l~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~ 324 (477)
..|.++.|++.+-.... ....++|.||||||+||+++.|.+.+...++++- +..|-.-.+|.+.
T Consensus 25 kgpt~VeDLddkFkdnk--dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdi--g~PikVGKlDaT~------------ 88 (468)
T KOG4277|consen 25 KGPTAVEDLDDKFKDNK--DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDI--GLPIKVGKLDATR------------ 88 (468)
T ss_pred CCchhhhhhhHHhhhcc--cCCeEEEEeechhhhhcccccchhHHhCcchhhc--CCceeeccccccc------------
Confidence 33555555544322111 1468999999999999999999999999888876 4555555666554
Q ss_pred ceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEe
Q 011791 325 LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 325 ~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
-..++..|+|+|+||+.++ ++|-.+..
T Consensus 89 ---------f~aiAnefgiqGYPTIk~~-kgd~a~dY 115 (468)
T KOG4277|consen 89 ---------FPAIANEFGIQGYPTIKFF-KGDHAIDY 115 (468)
T ss_pred ---------chhhHhhhccCCCceEEEe-cCCeeeec
Confidence 2368999999999999999 55555543
|
|
| >PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.5e-08 Score=80.28 Aligned_cols=69 Identities=19% Similarity=0.452 Sum_probs=57.8
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
++.++|+|+++||++|+.+.|.|.++.+.+.+ + +.++.|..+.. ..+++.|++.
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~--v~~~~vd~~~~-----------------------~~l~~~~~v~ 70 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-N--VKFAKVDCDEN-----------------------KELCKKYGVK 70 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-T--SEEEEEETTTS-----------------------HHHHHHTTCS
T ss_pred CCCEEEEEeCCCCCccccccceeccccccccc-c--cccchhhhhcc-----------------------chhhhccCCC
Confidence 58999999999999999999999999999987 3 77777766644 3488999999
Q ss_pred cCCeEEEECCCCCccc
Q 011791 185 TLPTLVIIGPDGKTLH 200 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~ 200 (477)
++|+++++. +|+...
T Consensus 71 ~~Pt~~~~~-~g~~~~ 85 (103)
T PF00085_consen 71 SVPTIIFFK-NGKEVK 85 (103)
T ss_dssp SSSEEEEEE-TTEEEE
T ss_pred CCCEEEEEE-CCcEEE
Confidence 999999996 555444
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A .... |
| >PHA02125 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.1e-08 Score=75.37 Aligned_cols=57 Identities=26% Similarity=0.606 Sum_probs=42.2
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
+++|||+||++|+.+.|.|.++. +.++-|+.|.. .++++.|+|.++||
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~vd~~~~-----------------------~~l~~~~~v~~~PT 49 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---------YTYVDVDTDEG-----------------------VELTAKHHIRSLPT 49 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---------heEEeeeCCCC-----------------------HHHHHHcCCceeCe
Confidence 68999999999999999986531 23444443332 36899999999999
Q ss_pred EEEECCCCcEEEe
Q 011791 349 LVAIGPSGRTITK 361 (477)
Q Consensus 349 ~~lid~~G~iv~~ 361 (477)
++ +|+.+.+
T Consensus 50 ~~----~g~~~~~ 58 (75)
T PHA02125 50 LV----NTSTLDR 58 (75)
T ss_pred EE----CCEEEEE
Confidence 87 5666654
|
|
| >cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.3e-08 Score=79.04 Aligned_cols=69 Identities=14% Similarity=0.251 Sum_probs=55.9
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++++|+||++||++|+.+.|.+.++.+.++.. .++.++.|+.+.. ..+++.|++.
T Consensus 15 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~-----------------------~~~~~~~~i~ 70 (101)
T cd02961 15 SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGD-GKVVVAKVDCTAN-----------------------NDLCSEYGVR 70 (101)
T ss_pred CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccC-CceEEEEeeccch-----------------------HHHHHhCCCC
Confidence 458999999999999999999999999998621 2267666665532 4578999999
Q ss_pred cCCeEEEECCCCC
Q 011791 185 TLPTLVIIGPDGK 197 (477)
Q Consensus 185 ~~P~~~lid~~G~ 197 (477)
++|++++++++|+
T Consensus 71 ~~Pt~~~~~~~~~ 83 (101)
T cd02961 71 GYPTIKLFPNGSK 83 (101)
T ss_pred CCCEEEEEcCCCc
Confidence 9999999998764
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies |
| >cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.3e-08 Score=81.65 Aligned_cols=63 Identities=14% Similarity=0.245 Sum_probs=52.2
Q ss_pred CEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCccc
Q 011791 106 KTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELST 185 (477)
Q Consensus 106 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 185 (477)
+.++|+||++||++|+...|.|.++.+.+ +. ++++.|..|..+ .+++.|++.+
T Consensus 23 ~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~---i~~~~vd~d~~~-----------------------~l~~~~~v~~ 75 (113)
T cd02975 23 VDLVVFSSKEGCQYCEVTKQLLEELSELS-DK---LKLEIYDFDEDK-----------------------EKAEKYGVER 75 (113)
T ss_pred eEEEEEeCCCCCCChHHHHHHHHHHHHhc-Cc---eEEEEEeCCcCH-----------------------HHHHHcCCCc
Confidence 56889999999999999999999998775 32 777778777542 4788999999
Q ss_pred CCeEEEECCC
Q 011791 186 LPTLVIIGPD 195 (477)
Q Consensus 186 ~P~~~lid~~ 195 (477)
+|++++++.+
T Consensus 76 vPt~~i~~~g 85 (113)
T cd02975 76 VPTTIFLQDG 85 (113)
T ss_pred CCEEEEEeCC
Confidence 9999999754
|
PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions. |
| >cd02958 UAS UAS family; UAS is a domain of unknown function | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-07 Score=78.51 Aligned_cols=74 Identities=20% Similarity=0.328 Sum_probs=54.7
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHH---HHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHh
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 340 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 340 (477)
++|+++|+|+++||++|+.+.... .++.+.+++. +|++..|.+..+ ...+++.
T Consensus 16 ~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~-----~v~~~~d~~~~e-------------------~~~~~~~ 71 (114)
T cd02958 16 EKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIREN-----FIFWQCDIDSSE-------------------GQRFLQS 71 (114)
T ss_pred hCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhC-----EEEEEecCCCcc-------------------HHHHHHH
Confidence 489999999999999999987643 3344445443 444444433211 2467889
Q ss_pred cCCCCcceEEEECC-CCcEEEe
Q 011791 341 FKVSGIPMLVAIGP-SGRTITK 361 (477)
Q Consensus 341 ~~v~~~Pt~~lid~-~G~iv~~ 361 (477)
|++.++|+++++|+ +|+++.+
T Consensus 72 ~~~~~~P~~~~i~~~~g~~l~~ 93 (114)
T cd02958 72 YKVDKYPHIAIIDPRTGEVLKV 93 (114)
T ss_pred hCccCCCeEEEEeCccCcEeEE
Confidence 99999999999999 8999987
|
Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP), |
| >TIGR00412 redox_disulf_2 small redox-active disulfide protein 2 | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.4e-08 Score=75.96 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=47.6
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
.|.||++||++|+.+.|.+.++.+++..+ +++ +.+| +. ..+..|++.++|+
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~---~~~--~~v~-~~-----------------------~~a~~~~v~~vPt 52 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGID---AEF--EKVT-DM-----------------------NEILEAGVTATPG 52 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCC---eEE--EEeC-CH-----------------------HHHHHcCCCcCCE
Confidence 37899999999999999999999988643 555 4555 22 1256699999999
Q ss_pred EEEECCCCcEEEe
Q 011791 349 LVAIGPSGRTITK 361 (477)
Q Consensus 349 ~~lid~~G~iv~~ 361 (477)
+++ +|+++..
T Consensus 53 i~i---~G~~~~~ 62 (76)
T TIGR00412 53 VAV---DGELVIM 62 (76)
T ss_pred EEE---CCEEEEE
Confidence 999 7887743
|
This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin. |
| >cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO) | Back alignment and domain information |
|---|
Probab=98.67 E-value=9e-08 Score=71.61 Aligned_cols=63 Identities=16% Similarity=0.267 Sum_probs=49.3
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
+..|+++||++|+.+.+.|+++.+.. +++++..++++.++ ++.+.|++.++|+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~----~~i~~~~id~~~~~-----------------------~l~~~~~i~~vPt 55 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALN----PNISAEMIDAAEFP-----------------------DLADEYGVMSVPA 55 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhC----CceEEEEEEcccCH-----------------------hHHHHcCCcccCE
Confidence 57899999999999999998886543 24778878777544 5788999999999
Q ss_pred EEEECCCCcEEEe
Q 011791 349 LVAIGPSGRTITK 361 (477)
Q Consensus 349 ~~lid~~G~iv~~ 361 (477)
+++ +|+++..
T Consensus 56 i~i---~~~~~~~ 65 (67)
T cd02973 56 IVI---NGKVEFV 65 (67)
T ss_pred EEE---CCEEEEe
Confidence 865 4666654
|
All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri |
| >KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.7e-08 Score=82.36 Aligned_cols=116 Identities=21% Similarity=0.314 Sum_probs=92.7
Q ss_pred hhhhhhccCCCccee-ccCCCceecccCCCC-EEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChh
Q 011791 237 TLESVLVSGDLDFVV-GKNGGKVPVSDLAGK-TILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 313 (477)
Q Consensus 237 ~l~~~~~~~~p~f~l-~~~g~~~~l~~~~gk-~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~ 313 (477)
.+.-..+...|||+| |.+|+.++|..+.|+ +|+++|| +...|.|.+..-.+..-|++++.. +.+|++++.|.. .
T Consensus 60 s~~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka--~aeV~GlS~D~s-~ 136 (211)
T KOG0855|consen 60 SLKVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKA--GAEVIGLSGDDS-A 136 (211)
T ss_pred ceeeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhc--CceEEeeccCch-H
Confidence 334445666799999 999999999999875 8888888 567899999999999999999875 589999999954 5
Q ss_pred HHHHHHhcCCCceeccCcchhHHHHHhcCCCCcc-------eEEEECCCC
Q 011791 314 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIP-------MLVAIGPSG 356 (477)
Q Consensus 314 ~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P-------t~~lid~~G 356 (477)
..++|..++. +.+.++.|+..++.+.+|+...| ..++++++|
T Consensus 137 sqKaF~sKqn-lPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~ 185 (211)
T KOG0855|consen 137 SQKAFASKQN-LPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGG 185 (211)
T ss_pred HHHHhhhhcc-CCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCC
Confidence 6667766655 56667789899999999987654 567776654
|
|
| >cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells | Back alignment and domain information |
|---|
Probab=98.64 E-value=7e-08 Score=79.83 Aligned_cols=71 Identities=11% Similarity=0.206 Sum_probs=43.3
Q ss_pred CCCEEEEEEeC--CCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhc
Q 011791 264 AGKTILLYFSA--HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 341 (477)
Q Consensus 264 ~gk~vll~F~a--~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 341 (477)
+.+.+||.|+| |||+ . .|.+.+|+.++...... |+...+|.+.. ....+.+|+.+|
T Consensus 17 ~~~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~~~aa~~--v~lakVd~~d~----------------~~~~~~~L~~~y 74 (116)
T cd03007 17 KFKYSLVKFDTAYPYGE---K-HEAFTRLAESSASATDD--LLVAEVGIKDY----------------GEKLNMELGERY 74 (116)
T ss_pred cCCcEEEEEeCCCCCCC---C-hHHHHHHHHHHHhhcCc--eEEEEEecccc----------------cchhhHHHHHHh
Confidence 46889999999 7777 2 24444444444322112 44455554210 000135799999
Q ss_pred CCC--CcceEEEECCCCc
Q 011791 342 KVS--GIPMLVAIGPSGR 357 (477)
Q Consensus 342 ~v~--~~Pt~~lid~~G~ 357 (477)
+|+ ++||+.|+ ++|.
T Consensus 75 ~I~~~gyPTl~lF-~~g~ 91 (116)
T cd03007 75 KLDKESYPVIYLF-HGGD 91 (116)
T ss_pred CCCcCCCCEEEEE-eCCC
Confidence 999 99999999 5563
|
It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. |
| >cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1 | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.5e-07 Score=76.84 Aligned_cols=67 Identities=19% Similarity=0.299 Sum_probs=52.7
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
++.++|+||++||++|+.+.|.+.++.+.+++. .++.+..|..+.. .+...+++.
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~------------------------~~~~~~~~~ 72 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD-DNVVIAKMDATAN------------------------DVPSEFVVD 72 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC-CCEEEEEEeCcch------------------------hhhhhccCC
Confidence 578999999999999999999999999998773 2266665655421 245677889
Q ss_pred cCCeEEEECCCC
Q 011791 185 TLPTLVIIGPDG 196 (477)
Q Consensus 185 ~~P~~~lid~~G 196 (477)
++|+++++.+++
T Consensus 73 ~~Pt~~~~~~~~ 84 (104)
T cd02995 73 GFPTILFFPAGD 84 (104)
T ss_pred CCCEEEEEcCCC
Confidence 999999997655
|
PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu |
| >cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions | Back alignment and domain information |
|---|
Probab=98.62 E-value=1e-07 Score=85.60 Aligned_cols=69 Identities=13% Similarity=0.201 Sum_probs=55.4
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++|+|+||++||+||+.+.|.|.++..+|.. +.++-|..|.. .++..|++.
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~----vkF~kVd~d~~------------------------~l~~~f~v~ 134 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA----VKFCKIRASAT------------------------GASDEFDTD 134 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCCC----eEEEEEeccch------------------------hhHHhCCCC
Confidence 45999999999999999999999999998852 55555555421 267889999
Q ss_pred cCCeEEEECCCCCccccc
Q 011791 185 TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~ 202 (477)
.+||++++. +|+++.+.
T Consensus 135 ~vPTlllyk-~G~~v~~~ 151 (175)
T cd02987 135 ALPALLVYK-GGELIGNF 151 (175)
T ss_pred CCCEEEEEE-CCEEEEEE
Confidence 999999885 78887654
|
It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-07 Score=79.44 Aligned_cols=81 Identities=17% Similarity=0.224 Sum_probs=56.0
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC--
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE-- 182 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 182 (477)
|+.++|+|+++|||+|+.+.|.|.++.++. + ..++.|.+|.+... .+... ..-..+.+.|+
T Consensus 23 ~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~---~--~~~y~vdvd~~~~~-----------~~~~~-~~~~~~~~~~~i~ 85 (122)
T TIGR01295 23 KETATFFIGRKTCPYCRKFSGTLSGVVAQT---K--APIYYIDSENNGSF-----------EMSSL-NDLTAFRSRFGIP 85 (122)
T ss_pred CCcEEEEEECCCChhHHHHhHHHHHHHHhc---C--CcEEEEECCCccCc-----------CcccH-HHHHHHHHHcCCc
Confidence 577899999999999999999999998872 2 56888988854310 00000 01123445544
Q ss_pred --cccCCeEEEECCCCCccccch
Q 011791 183 --LSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 183 --v~~~P~~~lid~~G~i~~~~~ 203 (477)
+.++|+++++. +|+.+.+..
T Consensus 86 ~~i~~~PT~v~~k-~Gk~v~~~~ 107 (122)
T TIGR01295 86 TSFMGTPTFVHIT-DGKQVSVRC 107 (122)
T ss_pred ccCCCCCEEEEEe-CCeEEEEEe
Confidence 56699999886 888776653
|
This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris. |
| >TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.1e-07 Score=97.35 Aligned_cols=69 Identities=16% Similarity=0.269 Sum_probs=57.3
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++++|+|+|||+||++|+.+.|.+.++.++|++.+ +.++.|.+|.+.. ....+.|+|
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~--v~~~kVdvD~~~~---------------------~~~~~~~~I 426 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSG--VKVAKFRADGDQK---------------------EFAKQELQL 426 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--cEEEEEECCCCcc---------------------HHHHHHcCC
Confidence 67899999999999999999999999999998765 7788888875421 113468999
Q ss_pred ccCCeEEEECCC
Q 011791 184 STLPTLVIIGPD 195 (477)
Q Consensus 184 ~~~P~~~lid~~ 195 (477)
.++||++++..+
T Consensus 427 ~~~PTii~Fk~g 438 (463)
T TIGR00424 427 GSFPTILFFPKH 438 (463)
T ss_pred CccceEEEEECC
Confidence 999999999754
|
This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis. |
| >KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.6e-07 Score=79.65 Aligned_cols=118 Identities=20% Similarity=0.263 Sum_probs=92.2
Q ss_pred ccCcCCCc----eecCCCCeEecCCCCCCEEEEEEec-CCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCC--HHH
Q 011791 82 LTSHSRDF----VISSDGRKISVSDLEGKTIGLYFSM-SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE--EES 154 (477)
Q Consensus 82 ~g~~~p~f----l~~~~g~~v~ls~l~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~--~~~ 154 (477)
+..+.|+| +++..-+.++|++++||+|+++|+. .+--.|..++-.+...+.++++.+ -+|+++|+|+. .-+
T Consensus 6 ~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n--~eVig~S~DS~fshlA 83 (196)
T KOG0852|consen 6 VFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLN--TEVLGISTDSVFSHLA 83 (196)
T ss_pred cCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcC--CeEEEEeccchhhhhh
Confidence 34566787 4577778999999999999999984 455689999999999999999987 89999999964 234
Q ss_pred HHHhhcCC---CCccccCCchhHHHHHHHcCc----cc--CCeEEEECCCCCcccc
Q 011791 155 FKRDLGSM---PWLALPFKDKSREKLARYFEL----ST--LPTLVIIGPDGKTLHS 201 (477)
Q Consensus 155 ~~~~~~~~---~~~~~~~~~~~~~~l~~~~~v----~~--~P~~~lid~~G~i~~~ 201 (477)
|...-.+. .-+.+|...+...++++.||| .+ +-.+++||++|.+...
T Consensus 84 W~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~i 139 (196)
T KOG0852|consen 84 WINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQI 139 (196)
T ss_pred HhcCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEe
Confidence 44443332 235678888888999999998 33 5578999999987663
|
|
| >KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.6e-07 Score=77.31 Aligned_cols=115 Identities=18% Similarity=0.262 Sum_probs=87.8
Q ss_pred Cccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC-------ChhHHHHH
Q 011791 247 LDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSFDEF 318 (477)
Q Consensus 247 p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~~~~ 318 (477)
-+|.. +++|+.++++.++||++||.--|+.|+.-...-..|++|+++|+++ +++|++..++. ..+++..|
T Consensus 15 ydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~--Gl~ILaFPCNQFg~QEp~~n~Ei~~f 92 (171)
T KOG1651|consen 15 YDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQ--GLEILAFPCNQFGNQEPGSNEEILNF 92 (171)
T ss_pred eeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhC--CeEEEEeccccccCcCCCCcHHHHHH
Confidence 67887 9999999999999999999999999999998888999999999987 79999998863 34678888
Q ss_pred HhcCCCceeccCcc------hhHHHHHhc----------CCCCcceEEEECCCCcEEEecc
Q 011791 319 FKGMPWLALPFGDA------RKASLSRKF----------KVSGIPMLVAIGPSGRTITKEA 363 (477)
Q Consensus 319 ~~~~~~~~~p~~~d------~~~~l~~~~----------~v~~~Pt~~lid~~G~iv~~~~ 363 (477)
+....-..+|+... ....+.+.+ +|..-=+-+|+|++|+++.|.+
T Consensus 93 ~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ 153 (171)
T KOG1651|consen 93 VKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFS 153 (171)
T ss_pred HHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeC
Confidence 87554454554321 111222222 1222236899999999999975
|
|
| >TIGR00411 redox_disulf_1 small redox-active disulfide protein 1 | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.9e-07 Score=70.40 Aligned_cols=58 Identities=16% Similarity=0.207 Sum_probs=47.4
Q ss_pred EEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCC
Q 011791 108 IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLP 187 (477)
Q Consensus 108 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 187 (477)
.+..||++||++|+...|.|.++.+.++.. +.++.|..+.+. .+.+.||+.++|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~v~~vP 55 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA---VEVEYINVMENP-----------------------QKAMEYGIMAVP 55 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc---eEEEEEeCccCH-----------------------HHHHHcCCccCC
Confidence 356799999999999999999999888643 777778776543 256789999999
Q ss_pred eEEE
Q 011791 188 TLVI 191 (477)
Q Consensus 188 ~~~l 191 (477)
++++
T Consensus 56 t~~~ 59 (82)
T TIGR00411 56 AIVI 59 (82)
T ss_pred EEEE
Confidence 9886
|
This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin. |
| >cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.3e-07 Score=71.48 Aligned_cols=71 Identities=14% Similarity=0.134 Sum_probs=57.0
Q ss_pred ccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHh
Q 011791 261 SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 340 (477)
Q Consensus 261 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 340 (477)
.++++..-+..|+++||++|....+.+.++.+.+ +++++..++++... +++..
T Consensus 8 ~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~----~~i~~~~vd~~~~~-----------------------e~a~~ 60 (89)
T cd03026 8 RRLNGPINFETYVSLSCHNCPDVVQALNLMAVLN----PNIEHEMIDGALFQ-----------------------DEVEE 60 (89)
T ss_pred HhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHC----CCceEEEEEhHhCH-----------------------HHHHH
Confidence 3566777888999999999999999998887764 24778877777443 57899
Q ss_pred cCCCCcceEEEECCCCcEEEe
Q 011791 341 FKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 341 ~~v~~~Pt~~lid~~G~iv~~ 361 (477)
|+|.++|++++ +|+++..
T Consensus 61 ~~V~~vPt~vi---dG~~~~~ 78 (89)
T cd03026 61 RGIMSVPAIFL---NGELFGF 78 (89)
T ss_pred cCCccCCEEEE---CCEEEEe
Confidence 99999999974 6887765
|
AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain. |
| >PF13728 TraF: F plasmid transfer operon protein | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.9e-07 Score=82.18 Aligned_cols=81 Identities=23% Similarity=0.354 Sum_probs=64.8
Q ss_pred CCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcC
Q 011791 263 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 342 (477)
Q Consensus 263 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 342 (477)
+.+++-|++|+.+.|++|+.+.|.|..+.++| +++|+.||+|.... ..||.... +..+++.++
T Consensus 118 la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-----g~~v~~vs~DG~~~-----------~~fp~~~~-~~g~~~~l~ 180 (215)
T PF13728_consen 118 LAQKYGLFFFYRSDCPYCQQQAPILQQFADKY-----GFSVIPVSLDGRPI-----------PSFPNPRP-DPGQAKRLG 180 (215)
T ss_pred HhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-----CCEEEEEecCCCCC-----------cCCCCCCC-CHHHHHHcC
Confidence 34678899999999999999999999999998 48899999996531 23333322 456888999
Q ss_pred CCCcceEEEECCCCcEEE
Q 011791 343 VSGIPMLVAIGPSGRTIT 360 (477)
Q Consensus 343 v~~~Pt~~lid~~G~iv~ 360 (477)
|..+|+++|+++++....
T Consensus 181 v~~~Pal~Lv~~~~~~~~ 198 (215)
T PF13728_consen 181 VKVTPALFLVNPNTKKWY 198 (215)
T ss_pred CCcCCEEEEEECCCCeEE
Confidence 999999999999884443
|
|
| >PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.6e-07 Score=71.40 Aligned_cols=43 Identities=28% Similarity=0.743 Sum_probs=31.6
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHH---HHHHHHHHhcCCcEEEEEEeCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSD 309 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~i~~d 309 (477)
.||+++|+|+++||++|+.+...+ .++.+.+.++ +..+.|..+
T Consensus 16 ~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~---fv~v~vd~~ 61 (82)
T PF13899_consen 16 EGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKN---FVLVKVDVD 61 (82)
T ss_dssp HTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHC---SEEEEEETT
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCC---EEEEEEEcC
Confidence 389999999999999999998777 3444445544 555555554
|
... |
| >KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.3e-07 Score=84.62 Aligned_cols=69 Identities=22% Similarity=0.349 Sum_probs=54.3
Q ss_pred CCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 011791 101 SDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180 (477)
Q Consensus 101 s~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (477)
+.--+|.|+|+|.|.||+||+...|.+..+..+|++. ||+-+|.++ ++..+..
T Consensus 17 s~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~a------VFlkVdVd~---------------------c~~taa~ 69 (288)
T KOG0908|consen 17 SAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGA------VFLKVDVDE---------------------CRGTAAT 69 (288)
T ss_pred hccCceEEEEEEEecccchHHhhhhHHHHhhhhCccc------EEEEEeHHH---------------------hhchhhh
Confidence 3345699999999999999999999999999999653 555555332 2446778
Q ss_pred cCcccCCeEEEECCCCC
Q 011791 181 FELSTLPTLVIIGPDGK 197 (477)
Q Consensus 181 ~~v~~~P~~~lid~~G~ 197 (477)
+||+++||++++. +|.
T Consensus 70 ~gV~amPTFiff~-ng~ 85 (288)
T KOG0908|consen 70 NGVNAMPTFIFFR-NGV 85 (288)
T ss_pred cCcccCceEEEEe-cCe
Confidence 9999999999886 443
|
|
| >PLN02309 5'-adenylylsulfate reductase | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.3e-07 Score=91.74 Aligned_cols=68 Identities=16% Similarity=0.309 Sum_probs=55.9
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHH-HcC
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR-YFE 182 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 182 (477)
++++++|+|||+||++|+.+.|.+.++.++|++.+ +.++.|+.|.+. ..++. .|+
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~--V~f~kVD~d~~~----------------------~~la~~~~~ 419 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSG--VKVAKFRADGDQ----------------------KEFAKQELQ 419 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--eEEEEEECCCcc----------------------hHHHHhhCC
Confidence 58899999999999999999999999999998665 777777776221 22454 699
Q ss_pred cccCCeEEEECCC
Q 011791 183 LSTLPTLVIIGPD 195 (477)
Q Consensus 183 v~~~P~~~lid~~ 195 (477)
|.++||++++.++
T Consensus 420 I~~~PTil~f~~g 432 (457)
T PLN02309 420 LGSFPTILLFPKN 432 (457)
T ss_pred CceeeEEEEEeCC
Confidence 9999999999654
|
|
| >PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.1e-07 Score=95.51 Aligned_cols=74 Identities=18% Similarity=0.261 Sum_probs=57.1
Q ss_pred CCCCEEEEEEecCCCccchhhHHHH---HHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHH
Q 011791 103 LEGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 179 (477)
Q Consensus 103 l~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 179 (477)
.+||+|+|+|||+||++|+.+.+.. .++.++++ + +.++-|.++++.+ ....+.+
T Consensus 472 ~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~--~~~v~vDvt~~~~-------------------~~~~l~~ 528 (571)
T PRK00293 472 GKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--D--TVLLQADVTANNA-------------------EDVALLK 528 (571)
T ss_pred hcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--C--CEEEEEECCCCCh-------------------hhHHHHH
Confidence 3589999999999999999887754 45666664 2 6666666654321 2246888
Q ss_pred HcCcccCCeEEEECCCCCcc
Q 011791 180 YFELSTLPTLVIIGPDGKTL 199 (477)
Q Consensus 180 ~~~v~~~P~~~lid~~G~i~ 199 (477)
.|++.++|+++++|++|+++
T Consensus 529 ~~~v~g~Pt~~~~~~~G~~i 548 (571)
T PRK00293 529 HYNVLGLPTILFFDAQGQEI 548 (571)
T ss_pred HcCCCCCCEEEEECCCCCCc
Confidence 99999999999999999875
|
|
| >KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.5e-06 Score=75.07 Aligned_cols=111 Identities=23% Similarity=0.275 Sum_probs=88.5
Q ss_pred eeccCCCceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCCh--hHHHHHHhcCC---
Q 011791 250 VVGKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ--TSFDEFFKGMP--- 323 (477)
Q Consensus 250 ~l~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~--~~~~~~~~~~~--- 323 (477)
+++..-+.++|++++||+|++.|| ..+--.|-.+.-.+.+.+.+|+.. +-+|+++|+|..- -.|...-++.+
T Consensus 18 VVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~--n~eVig~S~DS~fshlAW~ntprk~gGlg 95 (196)
T KOG0852|consen 18 VVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKL--NTEVLGISTDSVFSHLAWINTPRKQGGLG 95 (196)
T ss_pred EEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhc--CCeEEEEeccchhhhhhHhcCchhhCCcC
Confidence 346677899999999999999999 467778999999999999999976 7899999999532 23333333333
Q ss_pred CceeccCcchhHHHHHhcCCC----C--cceEEEECCCCcEEEec
Q 011791 324 WLALPFGDARKASLSRKFKVS----G--IPMLVAIGPSGRTITKE 362 (477)
Q Consensus 324 ~~~~p~~~d~~~~l~~~~~v~----~--~Pt~~lid~~G~iv~~~ 362 (477)
-+++|++.|.+.++++.|||- | +-.+++||++|.++...
T Consensus 96 ~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it 140 (196)
T KOG0852|consen 96 PLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQIT 140 (196)
T ss_pred ccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEee
Confidence 366999999999999999983 4 45699999999887643
|
|
| >cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.1e-06 Score=69.28 Aligned_cols=67 Identities=21% Similarity=0.366 Sum_probs=53.8
Q ss_pred CEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCccc
Q 011791 106 KTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELST 185 (477)
Q Consensus 106 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 185 (477)
++++|+||++||++|+.+.+.+.++.+. ..+ +.++.|+.+.. ..+.+.|++.+
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~--~~~~~i~~~~~-----------------------~~~~~~~~v~~ 63 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE--YPK--VKFVKVDVDEN-----------------------PELAEEYGVRS 63 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH--CCC--ceEEEEECCCC-----------------------hhHHHhcCccc
Confidence 7899999999999999999999999887 222 77777777643 34678899999
Q ss_pred CCeEEEECCCCCccc
Q 011791 186 LPTLVIIGPDGKTLH 200 (477)
Q Consensus 186 ~P~~~lid~~G~i~~ 200 (477)
+|++++++ +|+.+.
T Consensus 64 ~P~~~~~~-~g~~~~ 77 (93)
T cd02947 64 IPTFLFFK-NGKEVD 77 (93)
T ss_pred ccEEEEEE-CCEEEE
Confidence 99999986 555443
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio |
| >cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.4e-06 Score=79.50 Aligned_cols=68 Identities=13% Similarity=0.174 Sum_probs=54.1
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++|+|+||++||++|+.+.|.|.++..+|.. +.++-|..+ . ....|++.
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~----vkFvkI~ad--~------------------------~~~~~~i~ 151 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFPD----TKFVKIIST--Q------------------------CIPNYPDK 151 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCCC----CEEEEEEhH--H------------------------hHhhCCCC
Confidence 46899999999999999999999999999853 445545443 1 13689999
Q ss_pred cCCeEEEECCCCCccccch
Q 011791 185 TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~~ 203 (477)
.+||++++. +|+++.+.+
T Consensus 152 ~lPTlliyk-~G~~v~~iv 169 (192)
T cd02988 152 NLPTILVYR-NGDIVKQFI 169 (192)
T ss_pred CCCEEEEEE-CCEEEEEEe
Confidence 999999885 888877654
|
It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=98.39 E-value=2e-05 Score=84.20 Aligned_cols=176 Identities=15% Similarity=0.169 Sum_probs=100.7
Q ss_pred CCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 011791 102 DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 181 (477)
Q Consensus 102 ~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (477)
.+++++.++.|+...|..|......|.++. .+.++ +.+..+..+. ...+++.|
T Consensus 363 ~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~---i~~~~~~~~~-----------------------~~~~~~~~ 415 (555)
T TIGR03143 363 RLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEK---LNSEAVNRGE-----------------------EPESETLP 415 (555)
T ss_pred hcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCc---EEEEEecccc-----------------------chhhHhhc
Confidence 456677777888777777765555554444 23332 5554433322 24467899
Q ss_pred CcccCCeEEEECCCCC---ccccchhhHHhhcCCCCCCCChhhHHHHHHHHHHHhhhhhhhhhhccCCCcceeccCCCce
Q 011791 182 ELSTLPTLVIIGPDGK---TLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKV 258 (477)
Q Consensus 182 ~v~~~P~~~lid~~G~---i~~~~~~~~i~~~g~~a~P~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~p~f~l~~~g~~~ 258 (477)
++...|++.+++.+|. +.+..+ |...+ +..|....-. +..+.+ . ++.+..
T Consensus 416 ~v~~~P~~~i~~~~~~~~~i~f~g~------------P~G~E-f~s~i~~i~~----------~~~~~~--~--l~~~~~ 468 (555)
T TIGR03143 416 KITKLPTVALLDDDGNYTGLKFHGV------------PSGHE-LNSFILALYN----------AAGPGQ--P--LGEELL 468 (555)
T ss_pred CCCcCCEEEEEeCCCcccceEEEec------------CccHh-HHHHHHHHHH----------hcCCCC--C--CCHHHH
Confidence 9999999999976654 444332 22222 2222211100 000000 0 010000
Q ss_pred -ecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHH
Q 011791 259 -PVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASL 337 (477)
Q Consensus 259 -~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 337 (477)
.+..+.++.-+-.|.+++|++|......++++..+. ++++.-.|.....+ ++
T Consensus 469 ~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~----~~i~~~~i~~~~~~-----------------------~~ 521 (555)
T TIGR03143 469 EKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLN----PNVEAEMIDVSHFP-----------------------DL 521 (555)
T ss_pred HHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhC----CCceEEEEECcccH-----------------------HH
Confidence 122333444455668999999999888777776663 24666666655333 68
Q ss_pred HHhcCCCCcceEEEECCCCcEEEe
Q 011791 338 SRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 338 ~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
+..|+|.++|++++ ||+++..
T Consensus 522 ~~~~~v~~vP~~~i---~~~~~~~ 542 (555)
T TIGR03143 522 KDEYGIMSVPAIVV---DDQQVYF 542 (555)
T ss_pred HHhCCceecCEEEE---CCEEEEe
Confidence 88999999999887 4666654
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.1e-07 Score=93.21 Aligned_cols=71 Identities=30% Similarity=0.579 Sum_probs=57.1
Q ss_pred CEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCC
Q 011791 266 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSG 345 (477)
Q Consensus 266 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~ 345 (477)
+.-+|.||++||++|+++.|.+.++++.+..-.+-+.|..|++-.+. +..+++.|+|++
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~---------------------N~~lCRef~V~~ 116 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE---------------------NVKLCREFSVSG 116 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh---------------------hhhhHhhcCCCC
Confidence 57889999999999999999999999998765444555555554333 467999999999
Q ss_pred cceEEEECCCCc
Q 011791 346 IPMLVAIGPSGR 357 (477)
Q Consensus 346 ~Pt~~lid~~G~ 357 (477)
+|++.++.++-+
T Consensus 117 ~Ptlryf~~~~~ 128 (606)
T KOG1731|consen 117 YPTLRYFPPDSQ 128 (606)
T ss_pred CceeeecCCccc
Confidence 999999977743
|
|
| >smart00594 UAS UAS domain | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.5e-06 Score=71.15 Aligned_cols=69 Identities=16% Similarity=0.315 Sum_probs=49.8
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHH---HHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHh
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 340 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 340 (477)
.+|+++|+|+++||++|+.+.... .++.+.+... +-++.++++... ...++..
T Consensus 26 ~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~---fv~~~~dv~~~e---------------------g~~l~~~ 81 (122)
T smart00594 26 QRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIREN---FIFWQVDVDTSE---------------------GQRVSQF 81 (122)
T ss_pred hcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcC---EEEEEecCCChh---------------------HHHHHHh
Confidence 389999999999999999987653 2333444332 433334443222 2468999
Q ss_pred cCCCCcceEEEECCCC
Q 011791 341 FKVSGIPMLVAIGPSG 356 (477)
Q Consensus 341 ~~v~~~Pt~~lid~~G 356 (477)
|++.++|++++++++|
T Consensus 82 ~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 82 YKLDSFPYVAIVDPRT 97 (122)
T ss_pred cCcCCCCEEEEEecCC
Confidence 9999999999999997
|
|
| >cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.4e-06 Score=71.05 Aligned_cols=65 Identities=34% Similarity=0.508 Sum_probs=55.1
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
|+++++.|+++||++|....|.+.++.++++++ +.++.|..|.. ..+++.||+.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~---v~f~~vd~~~~-----------------------~~~~~~~~i~ 65 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK---LLFVVVDADDF-----------------------GRHLEYFGLK 65 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe---EEEEEEchHhh-----------------------HHHHHHcCCC
Confidence 789999999999999999999999999999864 67766665532 3478899998
Q ss_pred --cCCeEEEECCC
Q 011791 185 --TLPTLVIIGPD 195 (477)
Q Consensus 185 --~~P~~~lid~~ 195 (477)
++|++++++.+
T Consensus 66 ~~~~P~~~~~~~~ 78 (103)
T cd02982 66 EEDLPVIAIINLS 78 (103)
T ss_pred hhhCCEEEEEecc
Confidence 99999999863
|
Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w |
| >KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2e-06 Score=73.45 Aligned_cols=110 Identities=23% Similarity=0.352 Sum_probs=79.3
Q ss_pred hccCcCCCcee-cCCCCeEecCCCCCC-EEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHH
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSDLEGK-TIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKR 157 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~l~gk-~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~ 157 (477)
-.|...|||.+ |.||+.++|.++.|+ +|+++|+ +...|.|....-.+..-|++++..+ .+|+++|.|+... .+.
T Consensus 64 ~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~--aeV~GlS~D~s~s-qKa 140 (211)
T KOG0855|consen 64 NKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAG--AEVIGLSGDDSAS-QKA 140 (211)
T ss_pred ecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcC--ceEEeeccCchHH-HHH
Confidence 46899999954 999999999999876 7777777 3455789888888899999999988 9999999996532 233
Q ss_pred hhc--CCCCccccCCchhHHHHHHHcCcccCC-------eEEEECCCC
Q 011791 158 DLG--SMPWLALPFKDKSREKLARYFELSTLP-------TLVIIGPDG 196 (477)
Q Consensus 158 ~~~--~~~~~~~~~~~~~~~~l~~~~~v~~~P-------~~~lid~~G 196 (477)
+.. ++|+.-+.+ ..+++.+.+|+...| ..++++..|
T Consensus 141 F~sKqnlPYhLLSD---pk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~ 185 (211)
T KOG0855|consen 141 FASKQNLPYHLLSD---PKNEVIKDLGAPKDPFGGLPGRSHYIFDKGG 185 (211)
T ss_pred hhhhccCCeeeecC---cchhHHHHhCCCCCCCCCcccceEEEEecCC
Confidence 333 345444433 345677888875544 445555443
|
|
| >TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.7e-06 Score=79.47 Aligned_cols=102 Identities=18% Similarity=0.246 Sum_probs=74.3
Q ss_pred CCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcC
Q 011791 263 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 342 (477)
Q Consensus 263 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 342 (477)
+.+++-|++||.+.|++|.++.|.++.+.++| +++|+.||+|.... ..||.... +..+++.+|
T Consensus 148 la~~~gL~fFy~~~C~~C~~~apil~~fa~~y-----gi~v~~VS~DG~~~-----------p~fp~~~~-d~gqa~~l~ 210 (256)
T TIGR02739 148 LSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY-----GISVIPISVDGTLI-----------PGLPNSRS-DSGQAQHLG 210 (256)
T ss_pred HHhceeEEEEECCCCchhHHHHHHHHHHHHHh-----CCeEEEEecCCCCC-----------CCCCCccC-ChHHHHhcC
Confidence 34678899999999999999999999999998 48899999997531 23444332 445788999
Q ss_pred CCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHc
Q 011791 343 VSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAK 394 (477)
Q Consensus 343 v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 394 (477)
|..+|+++|++++.+....- .+|.- + .++|.+.+...+.
T Consensus 211 v~~~Pal~Lv~~~t~~~~pv------~~G~i----S---~deL~~Ri~~v~~ 249 (256)
T TIGR02739 211 VKYFPALYLVNPKSQKMSPL------AYGFI----S---QDELKERILNVLT 249 (256)
T ss_pred CccCceEEEEECCCCcEEEE------eeccC----C---HHHHHHHHHHHHh
Confidence 99999999999985544331 23322 2 3556666665543
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se. |
| >PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1 | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.2e-06 Score=69.01 Aligned_cols=60 Identities=27% Similarity=0.460 Sum_probs=55.1
Q ss_pred ccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC
Q 011791 248 DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR 310 (477)
Q Consensus 248 ~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~ 310 (477)
+|.+ +++|+.++++.++||++||.-.|+-|+.-. ....|++|+++|+++ +++|+++.++.
T Consensus 3 df~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~--gl~ILaFPcnq 63 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDK--GLEILAFPCNQ 63 (108)
T ss_dssp GSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGG--TEEEEEEEBST
T ss_pred ceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcC--CeEEEeeehHH
Confidence 5677 999999999999999999999999999998 788999999999987 79999999864
|
11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C .... |
| >cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO) | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.4e-06 Score=62.97 Aligned_cols=62 Identities=15% Similarity=0.163 Sum_probs=46.0
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
+..|+++||++|+...+.|.++.+.+. ++++..+.+|.++ .+++.||+.++|+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~----~i~~~~id~~~~~-----------------------~l~~~~~i~~vPt 55 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP----NISAEMIDAAEFP-----------------------DLADEYGVMSVPA 55 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC----ceEEEEEEcccCH-----------------------hHHHHcCCcccCE
Confidence 567999999999999999888865432 2777777766443 3677899999999
Q ss_pred EEEECCCCCccc
Q 011791 189 LVIIGPDGKTLH 200 (477)
Q Consensus 189 ~~lid~~G~i~~ 200 (477)
+++ +|+++.
T Consensus 56 i~i---~~~~~~ 64 (67)
T cd02973 56 IVI---NGKVEF 64 (67)
T ss_pred EEE---CCEEEE
Confidence 866 455443
|
All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri |
| >TIGR00412 redox_disulf_2 small redox-active disulfide protein 2 | Back alignment and domain information |
|---|
Probab=98.27 E-value=3e-06 Score=65.11 Aligned_cols=59 Identities=12% Similarity=0.088 Sum_probs=44.9
Q ss_pred EEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCeE
Q 011791 110 LYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTL 189 (477)
Q Consensus 110 l~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 189 (477)
|.||++||++|....|.+.++.+++... +++ +.+|+ .+ .+..|++.++|++
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~---~~~--~~v~~-~~-----------------------~a~~~~v~~vPti 53 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGID---AEF--EKVTD-MN-----------------------EILEAGVTATPGV 53 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCC---eEE--EEeCC-HH-----------------------HHHHcCCCcCCEE
Confidence 7899999999999999999999988543 555 44442 11 1456899999998
Q ss_pred EEECCCCCccc
Q 011791 190 VIIGPDGKTLH 200 (477)
Q Consensus 190 ~lid~~G~i~~ 200 (477)
++ +|+.+.
T Consensus 54 ~i---~G~~~~ 61 (76)
T TIGR00412 54 AV---DGELVI 61 (76)
T ss_pred EE---CCEEEE
Confidence 88 777663
|
This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin. |
| >PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.1e-07 Score=57.49 Aligned_cols=28 Identities=46% Similarity=1.158 Sum_probs=14.2
Q ss_pred eccCCCCCCCe-EEEEcCCCCCCcccccc
Q 011791 418 SCDGCDEEGRV-WAFSCDECDFCLHPNCA 445 (477)
Q Consensus 418 ~~~~C~~~g~~-w~~~~~~~~~~~~~~~~ 445 (477)
.|+.|++.+.+ |.|+|.+|||.||..||
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 68999999999 99999999999999996
|
The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A. |
| >PRK13703 conjugal pilus assembly protein TraF; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.2e-06 Score=77.47 Aligned_cols=102 Identities=16% Similarity=0.193 Sum_probs=72.8
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+++-|++||.+.|++|.++.|.|+.+.++| ++.|+.||+|.... ..||.... +......++|
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y-----g~~v~~VS~DG~~~-----------p~fp~~~~-d~gqa~~l~v 204 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTY-----GLSVIPVSVDGVIN-----------PLLPDSRT-DQGQAQRLGV 204 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHh-----CCeEEEEecCCCCC-----------CCCCCCcc-ChhHHHhcCC
Confidence 3567789999999999999999999999998 48899999997531 23444322 3345678999
Q ss_pred CCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcC
Q 011791 344 SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKG 395 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 395 (477)
..+|+++|++++.+....- .+|.-. .++|.+.+...+.+
T Consensus 205 ~~~PAl~Lv~~~t~~~~pv------~~G~iS-------~deL~~Ri~~v~t~ 243 (248)
T PRK13703 205 KYFPALMLVDPKSGSVRPL------SYGFIT-------QDDLAKRFLNVSTD 243 (248)
T ss_pred cccceEEEEECCCCcEEEE------eeccCC-------HHHHHHHHHHHHhc
Confidence 9999999999986433321 333222 35676766655443
|
|
| >PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.9e-06 Score=71.84 Aligned_cols=111 Identities=16% Similarity=0.316 Sum_probs=56.1
Q ss_pred CCCEEEEEEeCCCChhhHhHhHH-H--HHHHHHHHhcCCcEEEEEEeCCCCh-hHHHHHHhcCCCceeccCcchhHHHHH
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPK-L--IDAYKKIKERNESLEVVFISSDRDQ-TSFDEFFKGMPWLALPFGDARKASLSR 339 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~-l--~~l~~~~~~~~~~~~iv~i~~d~~~-~~~~~~~~~~~~~~~p~~~d~~~~l~~ 339 (477)
.+|+|+|.++++||.+|+.|... + .++++-+.+. +|.|.+|.+. ..+...+... ...
T Consensus 36 e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~-----FI~VkvDree~Pdid~~y~~~--------------~~~ 96 (163)
T PF03190_consen 36 ENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN-----FIPVKVDREERPDIDKIYMNA--------------VQA 96 (163)
T ss_dssp HT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH------EEEEEETTT-HHHHHHHHHH--------------HHH
T ss_pred cCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC-----EEEEEeccccCccHHHHHHHH--------------HHH
Confidence 38999999999999999998752 2 3344555544 6777777654 2222222211 112
Q ss_pred hcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCCchh
Q 011791 340 KFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPEN 399 (477)
Q Consensus 340 ~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 399 (477)
..|..|+|++++++|+|+.+.... +.-.. .......+.+++.++.++-+..+.+
T Consensus 97 ~~~~gGwPl~vfltPdg~p~~~~t-----Y~P~~-~~~g~~~f~~~l~~i~~~w~~~~~~ 150 (163)
T PF03190_consen 97 MSGSGGWPLTVFLTPDGKPFFGGT-----YFPPE-DRYGRPGFLQLLERIAELWKENREQ 150 (163)
T ss_dssp HHS---SSEEEEE-TTS-EEEEES-----S--SS--BTTB--HHHHHHHHHHHHHHSHHH
T ss_pred hcCCCCCCceEEECCCCCeeeeee-----ecCCC-CCCCCccHHHHHHHHHHHHHHCHHH
Confidence 237889999999999999988632 11111 0112234556666666554444333
|
; PDB: 3IRA_A. |
| >cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.6e-06 Score=69.45 Aligned_cols=93 Identities=11% Similarity=0.199 Sum_probs=56.7
Q ss_pred CCCEEEEEEecCCCccchhhHHHHH---HHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLV---EVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~---~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (477)
+||+|+|+|++.||++|+.+-...- ++.+.+.+ . |.+|-+..|.... ... .
T Consensus 22 ~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~-~--Fv~V~l~~d~td~------------~~~-----------~ 75 (130)
T cd02960 22 SNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE-D--FIMLNLVHETTDK------------NLS-----------P 75 (130)
T ss_pred CCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh-C--eEEEEEEeccCCC------------CcC-----------c
Confidence 5799999999999999998876432 23333433 2 6544454442210 000 0
Q ss_pred cCcccCCeEEEECCCCCccccchhhHHhhcCCCCCCCChhhHHHHHH
Q 011791 181 FELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAE 227 (477)
Q Consensus 181 ~~v~~~P~~~lid~~G~i~~~~~~~~i~~~g~~a~P~~~~~~~~l~~ 227 (477)
.+ .++|+++++|++|+++.+-... ++...|-..+..+..+.+
T Consensus 76 ~g-~~vPtivFld~~g~vi~~i~Gy----~~~~~~~y~~~~~~~~~~ 117 (130)
T cd02960 76 DG-QYVPRIMFVDPSLTVRADITGR----YSNRLYTYEPADIPLLIE 117 (130)
T ss_pred cC-cccCeEEEECCCCCCccccccc----ccCccceeCcCcHHHHHH
Confidence 12 4689999999999988765322 333445555665555543
|
They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19. |
| >COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.2e-06 Score=69.36 Aligned_cols=114 Identities=24% Similarity=0.325 Sum_probs=78.1
Q ss_pred CCc-eecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC-------CHHHHHHh
Q 011791 87 RDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EEESFKRD 158 (477)
Q Consensus 87 p~f-l~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~-------~~~~~~~~ 158 (477)
-|| +.+.+|+.+++++++||++||.=.|+-|+.-. ....|+.||++|+++| |+|+++.++. +.++..++
T Consensus 6 yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~G--f~VLgFPcNQF~~QEPg~~eEI~~f 82 (162)
T COG0386 6 YDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKG--FEVLGFPCNQFGGQEPGSDEEIAKF 82 (162)
T ss_pred ccceeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCC--cEEEeccccccccCCCCCHHHHHHH
Confidence 345 34889999999999999999999999998765 5667899999999999 9999998862 34555555
Q ss_pred hcCCCCccccCC------chhHHHHHHHcC-----------cccCCeEEEECCCCCccccch
Q 011791 159 LGSMPWLALPFK------DKSREKLARYFE-----------LSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 159 ~~~~~~~~~~~~------~~~~~~l~~~~~-----------v~~~P~~~lid~~G~i~~~~~ 203 (477)
-...=-..+|.. ......|.+.+. |..-=+-+|||++|+++.+..
T Consensus 83 C~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~ 144 (162)
T COG0386 83 CQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFS 144 (162)
T ss_pred HHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeC
Confidence 542111222221 112223333321 111126789999999998874
|
|
| >cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.2e-06 Score=65.34 Aligned_cols=71 Identities=11% Similarity=0.034 Sum_probs=55.0
Q ss_pred CCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 011791 101 SDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180 (477)
Q Consensus 101 s~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (477)
.++++++.+..|+++||++|....+.+.++.+.+.+ +.+..+..|.. ..+++.
T Consensus 8 ~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~----i~~~~vd~~~~-----------------------~e~a~~ 60 (89)
T cd03026 8 RRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPN----IEHEMIDGALF-----------------------QDEVEE 60 (89)
T ss_pred HhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCC----ceEEEEEhHhC-----------------------HHHHHH
Confidence 356778888999999999999998888888876532 66666766644 336789
Q ss_pred cCcccCCeEEEECCCCCcccc
Q 011791 181 FELSTLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 181 ~~v~~~P~~~lid~~G~i~~~ 201 (477)
|+|.++|++++ +|+.+..
T Consensus 61 ~~V~~vPt~vi---dG~~~~~ 78 (89)
T cd03026 61 RGIMSVPAIFL---NGELFGF 78 (89)
T ss_pred cCCccCCEEEE---CCEEEEe
Confidence 99999999975 5776664
|
AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain. |
| >PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.4e-06 Score=70.46 Aligned_cols=74 Identities=19% Similarity=0.377 Sum_probs=46.9
Q ss_pred CCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHh--
Q 011791 263 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK-- 340 (477)
Q Consensus 263 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~-- 340 (477)
+..+..++.|..+|||.|+...|.|.++++..+ ++++-.+..|.+.+ +...
T Consensus 39 ~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p----~i~~~~i~rd~~~e-----------------------l~~~~l 91 (129)
T PF14595_consen 39 IQKPYNILVITETWCGDCARNVPVLAKIAEANP----NIEVRIILRDENKE-----------------------LMDQYL 91 (129)
T ss_dssp --S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T----TEEEEEE-HHHHHH-----------------------HTTTTT
T ss_pred cCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC----CCeEEEEEecCChh-----------------------HHHHHH
Confidence 345678889999999999999999999988743 47777776664432 2221
Q ss_pred -cCCCCcceEEEECCCCcEEEecc
Q 011791 341 -FKVSGIPMLVAIGPSGRTITKEA 363 (477)
Q Consensus 341 -~~v~~~Pt~~lid~~G~iv~~~~ 363 (477)
.|..++|+++++|.+|+.+.+.+
T Consensus 92 t~g~~~IP~~I~~d~~~~~lg~wg 115 (129)
T PF14595_consen 92 TNGGRSIPTFIFLDKDGKELGRWG 115 (129)
T ss_dssp T-SS--SSEEEEE-TT--EEEEEE
T ss_pred hCCCeecCEEEEEcCCCCEeEEEc
Confidence 57889999999999999998865
|
|
| >cd02958 UAS UAS family; UAS is a domain of unknown function | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.1e-05 Score=67.13 Aligned_cols=75 Identities=20% Similarity=0.313 Sum_probs=53.4
Q ss_pred CCCEEEEEEecCCCccchhhHHH-H--HHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPR-L--VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~-l--~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (477)
++|+++|+|++.||++|..+... | .++.+.+++. +..+.+.+++.. ...+++.
T Consensus 16 ~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~---~v~~~~d~~~~e---------------------~~~~~~~ 71 (114)
T cd02958 16 EKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIREN---FIFWQCDIDSSE---------------------GQRFLQS 71 (114)
T ss_pred hCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhC---EEEEEecCCCcc---------------------HHHHHHH
Confidence 57999999999999999987642 2 2344445443 444444433211 2457889
Q ss_pred cCcccCCeEEEECC-CCCccccc
Q 011791 181 FELSTLPTLVIIGP-DGKTLHSN 202 (477)
Q Consensus 181 ~~v~~~P~~~lid~-~G~i~~~~ 202 (477)
|++.++|+++++|+ +|+++.+.
T Consensus 72 ~~~~~~P~~~~i~~~~g~~l~~~ 94 (114)
T cd02958 72 YKVDKYPHIAIIDPRTGEVLKVW 94 (114)
T ss_pred hCccCCCeEEEEeCccCcEeEEE
Confidence 99999999999999 89988764
|
Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP), |
| >KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.6e-05 Score=74.43 Aligned_cols=178 Identities=17% Similarity=0.172 Sum_probs=100.9
Q ss_pred CEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCccc
Q 011791 106 KTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELST 185 (477)
Q Consensus 106 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 185 (477)
-..+|+|+|+||.+|+..-|.+.++--.+++.|.++.|= .+|.+. -..++..|||++
T Consensus 44 diW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVG--KlDaT~---------------------f~aiAnefgiqG 100 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVG--KLDATR---------------------FPAIANEFGIQG 100 (468)
T ss_pred CeEEEEeechhhhhcccccchhHHhCcchhhcCCceeec--cccccc---------------------chhhHhhhccCC
Confidence 478999999999999999999999988888888544431 223221 145889999999
Q ss_pred CCeEEEECCCCCccccchhhHHhhcCCCCCCCChhhHHHHHHHHH------HHhhhhhhhhhhccCCCccee-ccCCCce
Q 011791 186 LPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQR------AKEESQTLESVLVSGDLDFVV-GKNGGKV 258 (477)
Q Consensus 186 ~P~~~lid~~G~i~~~~~~~~i~~~g~~a~P~~~~~~~~l~~~~~------~~~~~~~l~~~~~~~~p~f~l-~~~g~~~ 258 (477)
+||+.++..+-.+-++..+ +...+.+++.... ....++..+.+.....|.|++ .....++
T Consensus 101 YPTIk~~kgd~a~dYRG~R-------------~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~PL 167 (468)
T KOG4277|consen 101 YPTIKFFKGDHAIDYRGGR-------------EKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFVFFGTGEGPL 167 (468)
T ss_pred CceEEEecCCeeeecCCCc-------------cHHHHHHHHHhcccceeeecChhHHHHHHHhhccCceEEEEeCCCCcH
Confidence 9999999765555454432 2222223222111 111122233344455577777 3222222
Q ss_pred e---cccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHH-----HHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceec
Q 011791 259 P---VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKK-----IKERNESLEVVFISSDRDQTSFDEFFKGMPWLALP 328 (477)
Q Consensus 259 ~---l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p 328 (477)
. ......|.++-+|++.. ....|..+.+... |++. ...|.-+.+.+.+.+++.+..|.++-
T Consensus 168 ~d~fidAASe~~~~a~FfSas----eeVaPe~~~~kempaV~VFKDe-----tf~i~de~dd~dLseWinRERf~~fL 236 (468)
T KOG4277|consen 168 FDAFIDAASEKFSVARFFSAS----EEVAPEENDAKEMPAVAVFKDE-----TFEIEDEGDDEDLSEWINRERFPGFL 236 (468)
T ss_pred HHHHHHHhhhheeeeeeeccc----cccCCcccchhhccceEEEccc-----eeEEEecCchhHHHHHHhHhhccchh
Confidence 1 11224578888888642 2334443332111 2211 23334444556777777777665543
|
|
| >COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.1e-06 Score=66.72 Aligned_cols=72 Identities=38% Similarity=0.713 Sum_probs=54.8
Q ss_pred cccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC-CChhHHHHHHhcCCCceeccCcchhHHHH
Q 011791 260 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-RDQTSFDEFFKGMPWLALPFGDARKASLS 338 (477)
Q Consensus 260 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d-~~~~~~~~~~~~~~~~~~p~~~d~~~~l~ 338 (477)
...+.++++++.||++||++|+.+.|.+.++.+++.. .+.++.++.. .. ..+.
T Consensus 27 ~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~i~~~~~~-----------------------~~~~ 80 (127)
T COG0526 27 LSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG---DVEVVAVNVDDEN-----------------------PDLA 80 (127)
T ss_pred hhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC---CcEEEEEECCCCC-----------------------hHHH
Confidence 3334489999999999999999999999999999875 3677777775 22 2456
Q ss_pred HhcC--CCCcceEEEECCCCcE
Q 011791 339 RKFK--VSGIPMLVAIGPSGRT 358 (477)
Q Consensus 339 ~~~~--v~~~Pt~~lid~~G~i 358 (477)
..|+ +..+|+++++ .+|..
T Consensus 81 ~~~~~~~~~~p~~~~~-~~~~~ 101 (127)
T COG0526 81 AEFGVAVRSIPTLLLF-KDGKE 101 (127)
T ss_pred HHHhhhhccCCeEEEE-eCcch
Confidence 6677 8888998866 34443
|
|
| >PHA02125 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=98.11 E-value=7.1e-06 Score=62.83 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=36.5
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
+++|+++||++|+...|.|.++. ++++-|..|.. ..+++.|++.++|+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~vd~~~~-----------------------~~l~~~~~v~~~PT 49 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---------YTYVDVDTDEG-----------------------VELTAKHHIRSLPT 49 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---------heEEeeeCCCC-----------------------HHHHHHcCCceeCe
Confidence 68999999999999999875431 33333333322 35788999999999
Q ss_pred EE
Q 011791 189 LV 190 (477)
Q Consensus 189 ~~ 190 (477)
++
T Consensus 50 ~~ 51 (75)
T PHA02125 50 LV 51 (75)
T ss_pred EE
Confidence 86
|
|
| >COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.1e-05 Score=64.35 Aligned_cols=116 Identities=20% Similarity=0.242 Sum_probs=94.5
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHh
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK 320 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~ 320 (477)
+...|+|++ +.+...+++.++.||..+|..+ +---+.|......+++.+.++. +..|+.||+| -+-+.++|..
T Consensus 21 Gd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~----~~~Vl~IS~D-LPFAq~RfC~ 95 (158)
T COG2077 21 GDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG----NTVVLCISMD-LPFAQKRFCG 95 (158)
T ss_pred CCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC----CcEEEEEeCC-ChhHHhhhhh
Confidence 556799999 9999999999999987666555 6688999999999999888765 4789999999 5577889999
Q ss_pred cCCCceeccCcc-hhHHHHHhcCC--CCcc-------eEEEECCCCcEEEecc
Q 011791 321 GMPWLALPFGDA-RKASLSRKFKV--SGIP-------MLVAIGPSGRTITKEA 363 (477)
Q Consensus 321 ~~~~~~~p~~~d-~~~~l~~~~~v--~~~P-------t~~lid~~G~iv~~~~ 363 (477)
..+..+...++| ++..+.+.||+ ...| +.+++|.+|+|++...
T Consensus 96 aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~el 148 (158)
T COG2077 96 AEGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSEL 148 (158)
T ss_pred hcCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEc
Confidence 888776665555 56778899996 3444 6899999999998864
|
|
| >COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.08 E-value=9.5e-05 Score=62.92 Aligned_cols=84 Identities=25% Similarity=0.483 Sum_probs=60.0
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHH---HHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCc----chhHH
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLID---AYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGD----ARKAS 336 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~---l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~----d~~~~ 336 (477)
.+|+.++.|-++.|+.|.++...+.+ +.+-++.. +.++.+.+..... ..+-... -...+
T Consensus 41 ~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h---f~~~~l~i~~skp-----------v~f~~g~kee~~s~~E 106 (182)
T COG2143 41 NDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH---FSAYYLNISYSKP-----------VLFKVGDKEEKMSTEE 106 (182)
T ss_pred cCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC---eEEEEEEeccCcc-----------eEeecCceeeeecHHH
Confidence 48999999999999999998776633 33444443 6666666543321 1111111 12458
Q ss_pred HHHhcCCCCcceEEEECCCCcEEEe
Q 011791 337 LSRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 337 l~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
|++.|+|+++||++++|++|+.+..
T Consensus 107 La~kf~vrstPtfvFfdk~Gk~Il~ 131 (182)
T COG2143 107 LAQKFAVRSTPTFVFFDKTGKTILE 131 (182)
T ss_pred HHHHhccccCceEEEEcCCCCEEEe
Confidence 9999999999999999999998876
|
|
| >KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.1e-05 Score=67.83 Aligned_cols=116 Identities=21% Similarity=0.289 Sum_probs=79.7
Q ss_pred CCCce-ecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC-------CHHHHHH
Q 011791 86 SRDFV-ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EEESFKR 157 (477)
Q Consensus 86 ~p~fl-~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~-------~~~~~~~ 157 (477)
.-+|. .+.+|+.|+++.++||++||.=-|+-|+.-......|..|+++|+++| |+|++..++. +.++...
T Consensus 14 iydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~G--l~ILaFPCNQFg~QEp~~n~Ei~~ 91 (171)
T KOG1651|consen 14 IYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQG--LEILAFPCNQFGNQEPGSNEEILN 91 (171)
T ss_pred eeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCC--eEEEEeccccccCcCCCCcHHHHH
Confidence 44554 489999999999999999999999999988877789999999999999 9999998852 2334444
Q ss_pred hhcCCCCcccc------CCchhHHHHHHHcCcc-------cC---CeEEEECCCCCccccch
Q 011791 158 DLGSMPWLALP------FKDKSREKLARYFELS-------TL---PTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 158 ~~~~~~~~~~~------~~~~~~~~l~~~~~v~-------~~---P~~~lid~~G~i~~~~~ 203 (477)
++...+-..++ ...+....+.+.+.-. .| =+-+|+|++|.++.+..
T Consensus 92 f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ 153 (171)
T KOG1651|consen 92 FVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFS 153 (171)
T ss_pred HHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeC
Confidence 44422111111 1112223333333211 12 25689999999998764
|
|
| >cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.5e-05 Score=56.38 Aligned_cols=63 Identities=30% Similarity=0.657 Sum_probs=48.0
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
++.||++||++|+.+.+.+.++ +... .++.++.++++...... .....+++.++|+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~P~ 56 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLN--KGVKFEAVDVDEDPALE--------------------KELKRYGVGGVPT 56 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhC--CCcEEEEEEcCCChHHh--------------------hHHHhCCCccccE
Confidence 4789999999999999999988 3322 36889999988654311 1135688999999
Q ss_pred EEEECCC
Q 011791 349 LVAIGPS 355 (477)
Q Consensus 349 ~~lid~~ 355 (477)
+++++++
T Consensus 57 ~~~~~~~ 63 (69)
T cd01659 57 LVVFGPG 63 (69)
T ss_pred EEEEeCC
Confidence 9999765
|
Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. |
| >PF13728 TraF: F plasmid transfer operon protein | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.1e-05 Score=74.91 Aligned_cols=83 Identities=22% Similarity=0.343 Sum_probs=65.2
Q ss_pred cCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHH
Q 011791 100 VSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 179 (477)
Q Consensus 100 ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 179 (477)
+..+.+++-|++|+.+.|+.|..+.|.|+.+.++| | +.|+.||+|...- ..+|.... +..+++
T Consensus 115 l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g--~~v~~vs~DG~~~-----------~~fp~~~~-~~g~~~ 177 (215)
T PF13728_consen 115 LKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY---G--FSVIPVSLDGRPI-----------PSFPNPRP-DPGQAK 177 (215)
T ss_pred HHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---C--CEEEEEecCCCCC-----------cCCCCCCC-CHHHHH
Confidence 34456788899999999999999999999999998 5 9999999996431 12222222 345788
Q ss_pred HcCcccCCeEEEECCCCCcc
Q 011791 180 YFELSTLPTLVIIGPDGKTL 199 (477)
Q Consensus 180 ~~~v~~~P~~~lid~~G~i~ 199 (477)
.|||..+|+++|+++++...
T Consensus 178 ~l~v~~~Pal~Lv~~~~~~~ 197 (215)
T PF13728_consen 178 RLGVKVTPALFLVNPNTKKW 197 (215)
T ss_pred HcCCCcCCEEEEEECCCCeE
Confidence 99999999999999987433
|
|
| >PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.8e-05 Score=60.65 Aligned_cols=43 Identities=26% Similarity=0.380 Sum_probs=29.7
Q ss_pred CCCEEEEEEecCCCccchhhHHHH---HHHHHHHhcCCCcEEEEEEEcC
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLD 149 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~g~~~~vv~is~D 149 (477)
+||+++|+|++.||++|+.+-..+ .++.+.+.++ |..+-|..+
T Consensus 16 ~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~---fv~v~vd~~ 61 (82)
T PF13899_consen 16 EGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKN---FVLVKVDVD 61 (82)
T ss_dssp HTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHC---SEEEEEETT
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCC---EEEEEEEcC
Confidence 479999999999999999887654 2334434433 555555554
|
... |
| >KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00012 Score=63.30 Aligned_cols=140 Identities=17% Similarity=0.245 Sum_probs=104.0
Q ss_pred hccCCCcceeccCCCceecccCCCCEEEEEEe--CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCCh--h----
Q 011791 242 LVSGDLDFVVGKNGGKVPVSDLAGKTILLYFS--AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ--T---- 313 (477)
Q Consensus 242 ~~~~~p~f~l~~~g~~~~l~~~~gk~vll~F~--a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~--~---- 313 (477)
++...|+|..+..-..+.+.++.|.-+.|.|. |...|.|..++..+..++-+|..+ ++..+++|+|.-+ .
T Consensus 8 lgd~~PNfea~Tt~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KR--nvKlialS~d~vesH~~Wi~ 85 (224)
T KOG0854|consen 8 LGDTVPNFEADTTVGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKR--NVKLIALSVDDVESHKDWIK 85 (224)
T ss_pred ccCcCCCccccccccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhc--CceEEEeehhhHHHHHHHHH
Confidence 34556999997777889999999988888888 568899999999999999999887 7999999999532 2
Q ss_pred HHHHHHhcCC-CceeccCcchhHHHHHhcCCC--------C----cceEEEECCCCcEEEeccchhhhhcCCCCCCCCHH
Q 011791 314 SFDEFFKGMP-WLALPFGDARKASLSRKFKVS--------G----IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEE 380 (477)
Q Consensus 314 ~~~~~~~~~~-~~~~p~~~d~~~~l~~~~~v~--------~----~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~ 380 (477)
.++.|.+..+ -..+|+..|+..+++-.|+.- + .-.+++||++.++.-.. .|- ..+.+
T Consensus 86 DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~------lYP----~ttGR 155 (224)
T KOG0854|consen 86 DIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSF------LYP----STTGR 155 (224)
T ss_pred HHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEE------Ecc----cccCc
Confidence 3334433222 367788889999999888752 3 34689999999987553 222 12356
Q ss_pred HHHHHHHHHHHHH
Q 011791 381 RMKEIDGQYNEMA 393 (477)
Q Consensus 381 ~~~~l~~~~~~~~ 393 (477)
++++++..++.+.
T Consensus 156 N~dEiLRvidsLq 168 (224)
T KOG0854|consen 156 NFDEILRVIDSLQ 168 (224)
T ss_pred CHHHHHHHHHHHh
Confidence 6788887777653
|
|
| >PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1 | Back alignment and domain information |
|---|
Probab=97.90 E-value=5.2e-05 Score=61.94 Aligned_cols=58 Identities=29% Similarity=0.405 Sum_probs=52.8
Q ss_pred eecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC
Q 011791 90 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD 150 (477)
Q Consensus 90 l~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~ 150 (477)
+.+.+|+.++++.++||++||.=.|+-|+.-. ....|++|+++|+++| ++|+++.++.
T Consensus 6 ~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~g--l~ILaFPcnq 63 (108)
T PF00255_consen 6 AKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKG--LEILAFPCNQ 63 (108)
T ss_dssp EEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGT--EEEEEEEBST
T ss_pred eeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCC--eEEEeeehHH
Confidence 34889999999999999999999999999777 7889999999999998 9999998863
|
11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C .... |
| >KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.86 E-value=9.4e-06 Score=73.48 Aligned_cols=125 Identities=16% Similarity=0.279 Sum_probs=79.9
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
+++.++++||++||.+|.++...+..+.+.++ + ..++ +.+.+. ...++..+.+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~-~---~~~~--k~~a~~---------------------~~eis~~~~v 68 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK-N---AQFL--KLEAEE---------------------FPEISNLIAV 68 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh-h---heee--eehhhh---------------------hhHHHHHHHH
Confidence 68899999999999999999999999888873 2 4444 444333 2368999999
Q ss_pred CCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHc-CCchhhh---------------cccccc
Q 011791 344 SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAK-GWPENVK---------------HALHEH 407 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~---------------~~~~~~ 407 (477)
.+.|+++++ ..|+.+.+ ..|+++ +..-..++.+......-.. +...+++ ...+.+
T Consensus 69 ~~vp~~~~~-~~~~~v~~-------l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~lv~a~ 139 (227)
T KOG0911|consen 69 EAVPYFVFF-FLGEKVDR-------LSGADP-PFLVSKVEKLAESGSASLGMGLSTTIRETQTTNETDLDNRLEKLVKAK 139 (227)
T ss_pred hcCceeeee-ecchhhhh-------hhccCc-HHHHHHHHHhhhhcccccCCCCCcchhcccccchhhHHHHHHHhcccC
Confidence 999999999 67776665 334333 1111111222111110011 1111111 123378
Q ss_pred ceeeccCCceeccCCCC
Q 011791 408 ELVLDRCGVYSCDGCDE 424 (477)
Q Consensus 408 ~~~l~~~~~~~~~~C~~ 424 (477)
+++|+|+|.+.-+.|+-
T Consensus 140 ~v~lFmKG~p~~P~CGF 156 (227)
T KOG0911|consen 140 PVMLFMKGTPEEPKCGF 156 (227)
T ss_pred eEEEEecCCCCcccccc
Confidence 99999999999999864
|
|
| >TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.2e-05 Score=73.15 Aligned_cols=84 Identities=17% Similarity=0.298 Sum_probs=65.2
Q ss_pred cCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHH
Q 011791 100 VSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 179 (477)
Q Consensus 100 ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 179 (477)
+..+..++-+++|+...|+.|..+.|.|+.+.++| | ++|+.||+|...- ..+|.... +..+++
T Consensus 145 i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y---g--i~v~~VS~DG~~~-----------p~fp~~~~-d~gqa~ 207 (256)
T TIGR02739 145 IQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY---G--ISVIPISVDGTLI-----------PGLPNSRS-DSGQAQ 207 (256)
T ss_pred HHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh---C--CeEEEEecCCCCC-----------CCCCCccC-ChHHHH
Confidence 34456788899999999999999999999999998 5 9999999996531 12222221 244688
Q ss_pred HcCcccCCeEEEECCCCCccc
Q 011791 180 YFELSTLPTLVIIGPDGKTLH 200 (477)
Q Consensus 180 ~~~v~~~P~~~lid~~G~i~~ 200 (477)
.+|+..+|+++|++++.+...
T Consensus 208 ~l~v~~~Pal~Lv~~~t~~~~ 228 (256)
T TIGR02739 208 HLGVKYFPALYLVNPKSQKMS 228 (256)
T ss_pred hcCCccCceEEEEECCCCcEE
Confidence 999999999999999855433
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se. |
| >cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold | Back alignment and domain information |
|---|
Probab=97.84 E-value=8.2e-05 Score=53.58 Aligned_cols=63 Identities=24% Similarity=0.417 Sum_probs=48.4
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
++.||++||++|....+.+.++ .....+ +.++.++.+........ ...+++..+|+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~P~ 56 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKG--VKFEAVDVDEDPALEKE--------------------LKRYGVGGVPT 56 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCC--cEEEEEEcCCChHHhhH--------------------HHhCCCccccE
Confidence 4789999999999999999988 333434 89999988866542221 35688899999
Q ss_pred EEEECCC
Q 011791 189 LVIIGPD 195 (477)
Q Consensus 189 ~~lid~~ 195 (477)
+++++++
T Consensus 57 ~~~~~~~ 63 (69)
T cd01659 57 LVVFGPG 63 (69)
T ss_pred EEEEeCC
Confidence 9999865
|
Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. |
| >smart00594 UAS UAS domain | Back alignment and domain information |
|---|
Probab=97.83 E-value=9e-05 Score=62.52 Aligned_cols=69 Identities=17% Similarity=0.412 Sum_probs=49.3
Q ss_pred CCCEEEEEEecCCCccchhhHHHH---HHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (477)
++|.++|+|++.||++|..+.... .++.+.+.+ . +.++.+.+++.+ ...+++.
T Consensus 26 ~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~--fv~~~~dv~~~e---------------------g~~l~~~ 81 (122)
T smart00594 26 QRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-N--FIFWQVDVDTSE---------------------GQRVSQF 81 (122)
T ss_pred hcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-C--EEEEEecCCChh---------------------HHHHHHh
Confidence 579999999999999999876432 234444443 2 444444443322 2458899
Q ss_pred cCcccCCeEEEECCCC
Q 011791 181 FELSTLPTLVIIGPDG 196 (477)
Q Consensus 181 ~~v~~~P~~~lid~~G 196 (477)
|++.++|++++++++|
T Consensus 82 ~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 82 YKLDSFPYVAIVDPRT 97 (122)
T ss_pred cCcCCCCEEEEEecCC
Confidence 9999999999999987
|
|
| >PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines | Back alignment and domain information |
|---|
Probab=97.81 E-value=1.3e-05 Score=49.43 Aligned_cols=29 Identities=38% Similarity=0.900 Sum_probs=27.1
Q ss_pred eeccCCCCCCCeE-EEEcCCCCCCcccccc
Q 011791 417 YSCDGCDEEGRVW-AFSCDECDFCLHPNCA 445 (477)
Q Consensus 417 ~~~~~C~~~g~~w-~~~~~~~~~~~~~~~~ 445 (477)
++|+.|.+...+- .|+|++|+|.||++||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 1 FWCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 4799999999988 9999999999999997
|
The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins. |
| >PRK11509 hydrogenase-1 operon protein HyaE; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00028 Score=59.71 Aligned_cols=80 Identities=10% Similarity=0.171 Sum_probs=59.0
Q ss_pred CChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcceEEEECCC
Q 011791 276 WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPS 355 (477)
Q Consensus 276 wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~ 355 (477)
-++-+....-.|.++.++|.+. ++.++.|++|.+. .++..|||.++||++|+ ++
T Consensus 47 r~~E~~D~avvleELa~e~~~~--~v~~akVDiD~~~-----------------------~LA~~fgV~siPTLl~F-kd 100 (132)
T PRK11509 47 RTPEVSDNPVMIGELLREFPDY--TWQVAIADLEQSE-----------------------AIGDRFGVFRFPATLVF-TG 100 (132)
T ss_pred cCCccccHHHHHHHHHHHhcCC--ceEEEEEECCCCH-----------------------HHHHHcCCccCCEEEEE-EC
Confidence 3455556677788888888632 3778888887654 69999999999999999 89
Q ss_pred CcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcC
Q 011791 356 GRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKG 395 (477)
Q Consensus 356 G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 395 (477)
|+++.+. .|... .+++.+.|++++..
T Consensus 101 Gk~v~~i-------~G~~~-------k~~l~~~I~~~L~~ 126 (132)
T PRK11509 101 GNYRGVL-------NGIHP-------WAELINLMRGLVEP 126 (132)
T ss_pred CEEEEEE-------eCcCC-------HHHHHHHHHHHhcC
Confidence 9999873 33222 36677778777654
|
|
| >PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1 | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0001 Score=68.09 Aligned_cols=121 Identities=19% Similarity=0.296 Sum_probs=83.9
Q ss_pred hhccCCCccee-ccCCCc-eecccCC--CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEe----CCC--
Q 011791 241 VLVSGDLDFVV-GKNGGK-VPVSDLA--GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS----SDR-- 310 (477)
Q Consensus 241 ~~~~~~p~f~l-~~~g~~-~~l~~~~--gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~----~d~-- 310 (477)
.++..+||..+ +++|++ .++.++. ++|+||+|.+-.||+=+.-++.++++.++|.+. .++-+|.|. .|.
T Consensus 74 ~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI~EAHpsDgW~ 152 (237)
T PF00837_consen 74 KLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEEAHPSDGWA 152 (237)
T ss_pred eCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhHhhhCcCCCcc
Confidence 34667799988 999999 8999984 689999999999999999999999999999874 234444432 120
Q ss_pred ------------Ch-h--HHHHHHhcCCCceeccCcch-hHHHHHhcCCCCcce-EEEECCCCcEEEeccchh
Q 011791 311 ------------DQ-T--SFDEFFKGMPWLALPFGDAR-KASLSRKFKVSGIPM-LVAIGPSGRTITKEARDM 366 (477)
Q Consensus 311 ------------~~-~--~~~~~~~~~~~~~~p~~~d~-~~~l~~~~~v~~~Pt-~~lid~~G~iv~~~~~~~ 366 (477)
+. + ...+.+.+.. ...|+..|. +....+.|| ++|. +++| .+|+|++++|.++
T Consensus 153 ~~~~~~~i~qh~sledR~~aA~~l~~~~-~~~pi~vD~mdN~~~~~Yg--A~PeRlyIi-~~gkv~Y~Gg~GP 221 (237)
T PF00837_consen 153 FGNNPYEIPQHRSLEDRLRAAKLLKEEF-PQCPIVVDTMDNNFNKAYG--ALPERLYII-QDGKVVYKGGPGP 221 (237)
T ss_pred CCCCceeecCCCCHHHHHHHHHHHHhhC-CCCCEEEEccCCHHHHHhC--CCcceEEEE-ECCEEEEeCCCCC
Confidence 00 1 1222233222 456766553 556677777 4564 6666 6999999977554
|
97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process |
| >COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00029 Score=59.83 Aligned_cols=122 Identities=20% Similarity=0.254 Sum_probs=86.4
Q ss_pred hccCcCCCcee-cCCCCeEecCCCCCCEEEEE-EecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHh
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSDLEGKTIGLY-FSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 158 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~-F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~ 158 (477)
.+|.++|+|.+ +.+.+.++++++.||..+|. |-+-.-+.|-.....+++...++.+ ..|+.||.|-.- +.+.+
T Consensus 19 ~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~----~~Vl~IS~DLPF-Aq~Rf 93 (158)
T COG2077 19 QVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN----TVVLCISMDLPF-AQKRF 93 (158)
T ss_pred ccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC----cEEEEEeCCChh-HHhhh
Confidence 36899999955 88999999999999976555 5566789999999988888877754 689999999542 23333
Q ss_pred hcCCCCccc-cCCchhHHHHHHHcCc--ccCC-------eEEEECCCCCccccchhhHH
Q 011791 159 LGSMPWLAL-PFKDKSREKLARYFEL--STLP-------TLVIIGPDGKTLHSNVAEAI 207 (477)
Q Consensus 159 ~~~~~~~~~-~~~~~~~~~l~~~~~v--~~~P-------~~~lid~~G~i~~~~~~~~i 207 (477)
......-++ +..+-....+.+.||+ ...| +.+++|.+|++++..+..-|
T Consensus 94 C~aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~elv~ei 152 (158)
T COG2077 94 CGAEGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSELVPEI 152 (158)
T ss_pred hhhcCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEccchh
Confidence 333221112 2222234557788886 3344 78899999999998875544
|
|
| >cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00016 Score=59.90 Aligned_cols=71 Identities=11% Similarity=0.171 Sum_probs=44.8
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+.+.+||.|+|+| |.|.. .|+..+|..++......+.|.-|.+|+.. ......|++.|+|
T Consensus 17 ~~~~vlV~F~A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~------------------~~~~~~L~~~y~I 76 (116)
T cd03007 17 KFKYSLVKFDTAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYG------------------EKLNMELGERYKL 76 (116)
T ss_pred cCCcEEEEEeCCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEeccccc------------------chhhHHHHHHhCC
Confidence 3478999999944 33333 36666676666544323444445443211 1123569999999
Q ss_pred c--cCCeEEEECC
Q 011791 184 S--TLPTLVIIGP 194 (477)
Q Consensus 184 ~--~~P~~~lid~ 194 (477)
+ ++||+.++..
T Consensus 77 ~~~gyPTl~lF~~ 89 (116)
T cd03007 77 DKESYPVIYLFHG 89 (116)
T ss_pred CcCCCCEEEEEeC
Confidence 9 9999999974
|
It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. |
| >TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00021 Score=53.80 Aligned_cols=56 Identities=20% Similarity=0.564 Sum_probs=41.2
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
+..|+++||++|+...+.|.+ . ++.+..++++.+... ...+.+.+++.++|+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~--~i~~~~vdi~~~~~~-------------------~~~~~~~~~~~~vP~ 53 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------K--GIAFEEIDVEKDSAA-------------------REEVLKVLGQRGVPV 53 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------C--CCeEEEEeccCCHHH-------------------HHHHHHHhCCCcccE
Confidence 467999999999999887754 1 467777787765431 124567789999999
Q ss_pred EEEE
Q 011791 349 LVAI 352 (477)
Q Consensus 349 ~~li 352 (477)
+++.
T Consensus 54 ~~~~ 57 (74)
T TIGR02196 54 IVIG 57 (74)
T ss_pred EEEC
Confidence 9873
|
This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system. |
| >PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00018 Score=59.76 Aligned_cols=77 Identities=29% Similarity=0.656 Sum_probs=48.0
Q ss_pred CCEEEEEEeC-------CCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHH
Q 011791 265 GKTILLYFSA-------HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASL 337 (477)
Q Consensus 265 gk~vll~F~a-------~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 337 (477)
|++++|+|++ +|||.|++..|.+++......+ +..+|.+.+. +...|+. ++...
T Consensus 19 ~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~---~~~lv~v~VG-~r~~Wkd---------------p~n~f 79 (119)
T PF06110_consen 19 GKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE---NARLVYVEVG-DRPEWKD---------------PNNPF 79 (119)
T ss_dssp TSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST---TEEEEEEE----HHHHC----------------TTSHH
T ss_pred CCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC---CceEEEEEcC-CHHHhCC---------------CCCCc
Confidence 6788888885 5999999999999988777543 4777777775 3333321 11223
Q ss_pred HH--hcCCCCcceEEEECCCCcEEE
Q 011791 338 SR--KFKVSGIPMLVAIGPSGRTIT 360 (477)
Q Consensus 338 ~~--~~~v~~~Pt~~lid~~G~iv~ 360 (477)
.. .++++++||++-++..++++.
T Consensus 80 R~~p~~~l~~IPTLi~~~~~~rL~e 104 (119)
T PF06110_consen 80 RTDPDLKLKGIPTLIRWETGERLVE 104 (119)
T ss_dssp HH--CC---SSSEEEECTSS-EEEH
T ss_pred eEcceeeeeecceEEEECCCCccch
Confidence 33 589999999999976655443
|
; PDB: 1V9W_A 1WOU_A. |
| >PRK13703 conjugal pilus assembly protein TraF; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=5.3e-05 Score=71.24 Aligned_cols=82 Identities=13% Similarity=0.286 Sum_probs=63.4
Q ss_pred cCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHH
Q 011791 100 VSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 179 (477)
Q Consensus 100 ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 179 (477)
+.++.+++-|++|+.+.|+.|..+.|.|+.+.++| | ++|+.||+|.... ..+|.... +...++
T Consensus 138 i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y---g--~~v~~VS~DG~~~-----------p~fp~~~~-d~gqa~ 200 (248)
T PRK13703 138 IAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY---G--LSVIPVSVDGVIN-----------PLLPDSRT-DQGQAQ 200 (248)
T ss_pred HHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh---C--CeEEEEecCCCCC-----------CCCCCCcc-ChhHHH
Confidence 34456678899999999999999999999999998 5 9999999996431 22333221 233557
Q ss_pred HcCcccCCeEEEECCCCCc
Q 011791 180 YFELSTLPTLVIIGPDGKT 198 (477)
Q Consensus 180 ~~~v~~~P~~~lid~~G~i 198 (477)
.+|+..+|+++|++++.+-
T Consensus 201 ~l~v~~~PAl~Lv~~~t~~ 219 (248)
T PRK13703 201 RLGVKYFPALMLVDPKSGS 219 (248)
T ss_pred hcCCcccceEEEEECCCCc
Confidence 9999999999999988643
|
|
| >COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.73 E-value=5.3e-05 Score=78.22 Aligned_cols=76 Identities=25% Similarity=0.491 Sum_probs=52.1
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHH-HHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLI-DAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 342 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~-~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 342 (477)
++|+|+|+|||.||-.|+.+.+..- +.....+- .+ ++.+..|-+.+ ++...++.++||
T Consensus 473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~--~~--~vlLqaDvT~~-----------------~p~~~~lLk~~~ 531 (569)
T COG4232 473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL--QD--VVLLQADVTAN-----------------DPAITALLKRLG 531 (569)
T ss_pred CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc--CC--eEEEEeeecCC-----------------CHHHHHHHHHcC
Confidence 4569999999999999999887653 32222322 23 44444443221 122457788899
Q ss_pred CCCcceEEEECCCCcEEE
Q 011791 343 VSGIPMLVAIGPSGRTIT 360 (477)
Q Consensus 343 v~~~Pt~~lid~~G~iv~ 360 (477)
+-+.|++++++++|+-..
T Consensus 532 ~~G~P~~~ff~~~g~e~~ 549 (569)
T COG4232 532 VFGVPTYLFFGPQGSEPE 549 (569)
T ss_pred CCCCCEEEEECCCCCcCc
Confidence 999999999998987543
|
|
| >TIGR02200 GlrX_actino Glutaredoxin-like protein | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00015 Score=55.36 Aligned_cols=63 Identities=13% Similarity=0.360 Sum_probs=40.7
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHH-hcCCCCcc
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR-KFKVSGIP 347 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~-~~~v~~~P 347 (477)
+..||++||++|+++.+.|.++ ++.+-.++++.+... ...+.. .+++.++|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~---------~~~~~~idi~~~~~~-------------------~~~~~~~~~~~~~vP 53 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL---------GAAYEWVDIEEDEGA-------------------ADRVVSVNNGNMTVP 53 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc---------CCceEEEeCcCCHhH-------------------HHHHHHHhCCCceeC
Confidence 5679999999999999888654 233445666654321 011112 25889999
Q ss_pred eEEEECCCCcEEEe
Q 011791 348 MLVAIGPSGRTITK 361 (477)
Q Consensus 348 t~~lid~~G~iv~~ 361 (477)
++ ++ .+|+++..
T Consensus 54 ~i-~~-~~g~~l~~ 65 (77)
T TIGR02200 54 TV-KF-ADGSFLTN 65 (77)
T ss_pred EE-EE-CCCeEecC
Confidence 96 46 46777654
|
This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif. |
| >KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00014 Score=74.35 Aligned_cols=69 Identities=26% Similarity=0.309 Sum_probs=54.5
Q ss_pred CEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCccc
Q 011791 106 KTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELST 185 (477)
Q Consensus 106 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 185 (477)
+.-+|.|+++||++|+.+.|.++++.+.+..-..=+.|..|.+.++ .+..+++.|+|++
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~---------------------~N~~lCRef~V~~ 116 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADE---------------------ENVKLCREFSVSG 116 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccch---------------------hhhhhHhhcCCCC
Confidence 4578899999999999999999999999887642244444444322 2467999999999
Q ss_pred CCeEEEECCC
Q 011791 186 LPTLVIIGPD 195 (477)
Q Consensus 186 ~P~~~lid~~ 195 (477)
+|++..+.++
T Consensus 117 ~Ptlryf~~~ 126 (606)
T KOG1731|consen 117 YPTLRYFPPD 126 (606)
T ss_pred CceeeecCCc
Confidence 9999999876
|
|
| >COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00015 Score=59.34 Aligned_cols=48 Identities=29% Similarity=0.405 Sum_probs=39.9
Q ss_pred ecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC
Q 011791 99 SVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 149 (477)
Q Consensus 99 ~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D 149 (477)
.....+++++++.||++||++|+...|.+.++.+.+... +.++.+...
T Consensus 26 ~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~i~~~ 73 (127)
T COG0526 26 SLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGD---VEVVAVNVD 73 (127)
T ss_pred ehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcCC---cEEEEEECC
Confidence 334445899999999999999999999999999999862 677777775
|
|
| >KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00023 Score=67.24 Aligned_cols=76 Identities=18% Similarity=0.285 Sum_probs=62.6
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
...|+|.|+|.||+..+...|.+.+..++++++-.+-.+|+-.+|++.+ ..|+.+|.|+
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e---------------------~~ia~ky~I~ 71 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE---------------------DDIADKYHIN 71 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh---------------------hHHhhhhccc
Confidence 3679999999999999999999999999888764335788888887765 4578999999
Q ss_pred cCCeEEEECCCCCccccc
Q 011791 185 TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~ 202 (477)
.+||+-|+- +|.+..+.
T Consensus 72 KyPTlKvfr-nG~~~~rE 88 (375)
T KOG0912|consen 72 KYPTLKVFR-NGEMMKRE 88 (375)
T ss_pred cCceeeeee-ccchhhhh
Confidence 999999884 67766544
|
|
| >KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00029 Score=61.11 Aligned_cols=120 Identities=19% Similarity=0.306 Sum_probs=91.4
Q ss_pred ccCcCCCceecCCCCeEecCCCCCCEEEEEEec--CCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC--CHHHHHH
Q 011791 82 LTSHSRDFVISSDGRKISVSDLEGKTIGLYFSM--SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD--EEESFKR 157 (477)
Q Consensus 82 ~g~~~p~fl~~~~g~~v~ls~l~gk~vll~F~a--~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~--~~~~~~~ 157 (477)
+|+.+|+|-.+..-.++.+.++.|....|.|+- ...|.|..++..+..+.-++.++| +..++.|+|+ +...|.+
T Consensus 8 lgd~~PNfea~Tt~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRn--vKlialS~d~vesH~~Wi~ 85 (224)
T KOG0854|consen 8 LGDTVPNFEADTTVGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRN--VKLIALSVDDVESHKDWIK 85 (224)
T ss_pred ccCcCCCccccccccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcC--ceEEEeehhhHHHHHHHHH
Confidence 688999998877767799999999888888874 467999999999999999999998 9999999995 3445655
Q ss_pred hhcC----CC-CccccCCchhHHHHHHHcCc--------cc----CCeEEEECCCCCccccch
Q 011791 158 DLGS----MP-WLALPFKDKSREKLARYFEL--------ST----LPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 158 ~~~~----~~-~~~~~~~~~~~~~l~~~~~v--------~~----~P~~~lid~~G~i~~~~~ 203 (477)
-+++ .+ -+.+|...+..+.++-.|++ .+ .-.++++|++.++.-+..
T Consensus 86 DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~l 148 (224)
T KOG0854|consen 86 DIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFL 148 (224)
T ss_pred HHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEE
Confidence 4432 12 24455566667778877775 12 447889999998776553
|
|
| >TIGR02180 GRX_euk Glutaredoxin | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00015 Score=56.47 Aligned_cols=65 Identities=23% Similarity=0.402 Sum_probs=44.2
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
++.|+++||++|+...+.|.++. +.. .++++-|+.+.+..+++ ..+.+.+++.++|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~---~~~~~~v~~~~~~~~~~------------------~~l~~~~g~~~vP~ 57 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP---AYEVVELDQLSNGSEIQ------------------DYLEEITGQRTVPN 57 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC---CCEEEEeeCCCChHHHH------------------HHHHHHhCCCCCCe
Confidence 46799999999999999998865 221 26677666654433222 23566678999999
Q ss_pred EEEECCCCcEE
Q 011791 349 LVAIGPSGRTI 359 (477)
Q Consensus 349 ~~lid~~G~iv 359 (477)
++ + +|+.+
T Consensus 58 v~-i--~g~~i 65 (84)
T TIGR02180 58 IF-I--NGKFI 65 (84)
T ss_pred EE-E--CCEEE
Confidence 74 4 46544
|
This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. |
| >cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0011 Score=55.16 Aligned_cols=71 Identities=18% Similarity=0.277 Sum_probs=49.3
Q ss_pred CCCEEEEEEeCC----CChhhHhHh--HHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHH
Q 011791 264 AGKTILLYFSAH----WCPPCRAFL--PKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASL 337 (477)
Q Consensus 264 ~gk~vll~F~a~----wC~~C~~~~--p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 337 (477)
.+|.++|+++++ ||..|+..+ |.+.+. +.. ++-+++.++.... ...+
T Consensus 16 e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~---ln~---~fv~w~~dv~~~e---------------------g~~l 68 (116)
T cd02991 16 ELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEY---INT---RMLFWACSVAKPE---------------------GYRV 68 (116)
T ss_pred hCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHH---HHc---CEEEEEEecCChH---------------------HHHH
Confidence 489999999999 899998753 344333 333 3545555554332 2478
Q ss_pred HHhcCCCCcceEEEE---CCCCcEEEe
Q 011791 338 SRKFKVSGIPMLVAI---GPSGRTITK 361 (477)
Q Consensus 338 ~~~~~v~~~Pt~~li---d~~G~iv~~ 361 (477)
+..+++.++|+++++ +.+.+++.+
T Consensus 69 a~~l~~~~~P~~~~l~~~~~~~~vv~~ 95 (116)
T cd02991 69 SQALRERTYPFLAMIMLKDNRMTIVGR 95 (116)
T ss_pred HHHhCCCCCCEEEEEEecCCceEEEEE
Confidence 999999999999999 555556665
|
ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis. |
| >PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0001 Score=62.71 Aligned_cols=76 Identities=21% Similarity=0.214 Sum_probs=45.6
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
..+..++.|..+|||.|+..+|.|.++.+... + +++=.++.|++.+....+ + ..|.
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p--~--i~~~~i~rd~~~el~~~~------------------l--t~g~ 95 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANP--N--IEVRIILRDENKELMDQY------------------L--TNGG 95 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T--T--EEEEEE-HHHHHHHTTTT------------------T--T-SS
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCC--C--CeEEEEEecCChhHHHHH------------------H--hCCC
Confidence 34667788999999999999999999999754 2 666667666544321111 1 1467
Q ss_pred ccCCeEEEECCCCCccccch
Q 011791 184 STLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~~ 203 (477)
..+|+++++|.+|+.+.+-+
T Consensus 96 ~~IP~~I~~d~~~~~lg~wg 115 (129)
T PF14595_consen 96 RSIPTFIFLDKDGKELGRWG 115 (129)
T ss_dssp --SSEEEEE-TT--EEEEEE
T ss_pred eecCEEEEEcCCCCEeEEEc
Confidence 88999999999998876543
|
|
| >PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0023 Score=61.00 Aligned_cols=93 Identities=16% Similarity=0.230 Sum_probs=57.0
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeC---CCC-h-------------hHHHHHHhcCCCc-
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS---DRD-Q-------------TSFDEFFKGMPWL- 325 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~---d~~-~-------------~~~~~~~~~~~~~- 325 (477)
.+|.+++.|.-+.||+|+++.+.+.++.+. .+++|..+.+ ..+ . ..+..+...+...
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-----g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~ 190 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS-----GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLG 190 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc-----CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccC
Confidence 378899999999999999999888765442 1255544432 111 1 1122222211110
Q ss_pred -eecc--------CcchhHHHHHhcCCCCcceEEEECCCCcEEEe
Q 011791 326 -ALPF--------GDARKASLSRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 326 -~~p~--------~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
..+. ..+.+..+.+.+||+|+|++++.|.+|++...
T Consensus 191 ~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v 235 (251)
T PRK11657 191 LKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQV 235 (251)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEe
Confidence 0110 11235568889999999999999999986443
|
|
| >KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00023 Score=63.93 Aligned_cols=91 Identities=24% Similarity=0.477 Sum_probs=67.5
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC-
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV- 343 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v- 343 (477)
.++++|.|+|.|.+-|+...|.+.++..+|... .+.+-.|++..=+ +.+.+|+|
T Consensus 144 ~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~--~lkFGkvDiGrfp-----------------------d~a~kfris 198 (265)
T KOG0914|consen 144 RTYWLIEFFACWSPKCVRFSPVFAELSIKYNNN--LLKFGKVDIGRFP-----------------------DVAAKFRIS 198 (265)
T ss_pred ceEEEEEEEeecChhhcccccccHHHHHHhCCC--CCcccceeeccCc-----------------------ChHHheeec
Confidence 468999999999999999999999999999754 4555555555433 35666776
Q ss_pred -----CCcceEEEECCCCcEEEeccchhhhhc-CCCCCCCCHHHHH
Q 011791 344 -----SGIPMLVAIGPSGRTITKEARDMIAVH-GAEAYPFTEERMK 383 (477)
Q Consensus 344 -----~~~Pt~~lid~~G~iv~~~~~~~~~~~-g~~~~~~~~~~~~ 383 (477)
+..||++++ .+|+-+.+ +-.+..- -+..+++++++.-
T Consensus 199 ~s~~srQLPT~ilF-q~gkE~~R--rP~vd~~gra~s~~fSeenv~ 241 (265)
T KOG0914|consen 199 LSPGSRQLPTYILF-QKGKEVSR--RPDVDVKGRAVSFPFSEENVC 241 (265)
T ss_pred cCcccccCCeEEEE-ccchhhhc--CccccccCCcccccccHHHHH
Confidence 478999999 78887776 3344444 3455788887653
|
|
| >TIGR02180 GRX_euk Glutaredoxin | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00086 Score=52.07 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=41.9
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
++.|+++||++|....+.|.++. +.. .++++-|+.+.+.+... ..+.+.+|+..+|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~---~~~~~~v~~~~~~~~~~------------------~~l~~~~g~~~vP~ 57 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP---AYEVVELDQLSNGSEIQ------------------DYLEEITGQRTVPN 57 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC---CCEEEEeeCCCChHHHH------------------HHHHHHhCCCCCCe
Confidence 36789999999999998887765 222 26777777664443332 33556778899999
Q ss_pred EEE
Q 011791 189 LVI 191 (477)
Q Consensus 189 ~~l 191 (477)
+++
T Consensus 58 v~i 60 (84)
T TIGR02180 58 IFI 60 (84)
T ss_pred EEE
Confidence 754
|
This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. |
| >KOG3425 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.001 Score=54.11 Aligned_cols=72 Identities=24% Similarity=0.456 Sum_probs=48.9
Q ss_pred CCEEEEEEeC--------CCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHH
Q 011791 265 GKTILLYFSA--------HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKAS 336 (477)
Q Consensus 265 gk~vll~F~a--------~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 336 (477)
|+.++++|++ +|||.|.+..|.+.+..+.... ++.+|-+.+..- +. ..++...
T Consensus 25 ~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~---~~~~v~v~VG~r-p~---------------Wk~p~n~ 85 (128)
T KOG3425|consen 25 GKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE---DVHFVHVYVGNR-PY---------------WKDPANP 85 (128)
T ss_pred CceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC---ceEEEEEEecCC-Cc---------------ccCCCCc
Confidence 5557777775 6999999999999988886654 477777766532 11 1222233
Q ss_pred HHHhcCC-CCcceEEEECCC
Q 011791 337 LSRKFKV-SGIPMLVAIGPS 355 (477)
Q Consensus 337 l~~~~~v-~~~Pt~~lid~~ 355 (477)
+....++ .++||++=++..
T Consensus 86 FR~d~~~lt~vPTLlrw~~~ 105 (128)
T KOG3425|consen 86 FRKDPGILTAVPTLLRWKRQ 105 (128)
T ss_pred cccCCCceeecceeeEEcCc
Confidence 4455565 899999999743
|
|
| >PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0017 Score=54.04 Aligned_cols=78 Identities=17% Similarity=0.291 Sum_probs=47.2
Q ss_pred CCCEEEEEEec-------CCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHH
Q 011791 104 EGKTIGLYFSM-------SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREK 176 (477)
Q Consensus 104 ~gk~vll~F~a-------~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (477)
+|+.++|+|.+ +|||.|+...|.+.+.+....+. ..+|.|.+. ++..|+.- ...
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~---~~lv~v~VG-~r~~Wkdp---------------~n~ 78 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPEN---ARLVYVEVG-DRPEWKDP---------------NNP 78 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STT---EEEEEEE----HHHHC-T---------------TSH
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCC---ceEEEEEcC-CHHHhCCC---------------CCC
Confidence 35677777774 49999999999999988875442 666666664 33455421 112
Q ss_pred HHH--HcCcccCCeEEEECCCCCccc
Q 011791 177 LAR--YFELSTLPTLVIIGPDGKTLH 200 (477)
Q Consensus 177 l~~--~~~v~~~P~~~lid~~G~i~~ 200 (477)
... .++|.++||++-.+..+++..
T Consensus 79 fR~~p~~~l~~IPTLi~~~~~~rL~e 104 (119)
T PF06110_consen 79 FRTDPDLKLKGIPTLIRWETGERLVE 104 (119)
T ss_dssp HHH--CC---SSSEEEECTSS-EEEH
T ss_pred ceEcceeeeeecceEEEECCCCccch
Confidence 222 589999999999986655443
|
; PDB: 1V9W_A 1WOU_A. |
| >PRK11200 grxA glutaredoxin 1; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0034 Score=49.07 Aligned_cols=66 Identities=15% Similarity=0.293 Sum_probs=45.5
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhc--CCCCc
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF--KVSGI 346 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~--~v~~~ 346 (477)
+..|+.+||++|++....|+++..+++ ++.+..++++.+..+. .++.+.. ++..+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~----~i~~~~idi~~~~~~~-------------------~el~~~~~~~~~~v 59 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD----DFDYRYVDIHAEGISK-------------------ADLEKTVGKPVETV 59 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc----CCcEEEEECCCChHHH-------------------HHHHHHHCCCCCcC
Confidence 567899999999999999999876642 4677777777553211 1233333 45899
Q ss_pred ceEEEECCCCcEEE
Q 011791 347 PMLVAIGPSGRTIT 360 (477)
Q Consensus 347 Pt~~lid~~G~iv~ 360 (477)
|+++ + +|+.+.
T Consensus 60 P~if-i--~g~~ig 70 (85)
T PRK11200 60 PQIF-V--DQKHIG 70 (85)
T ss_pred CEEE-E--CCEEEc
Confidence 9976 5 576653
|
|
| >PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0068 Score=46.33 Aligned_cols=59 Identities=25% Similarity=0.489 Sum_probs=41.4
Q ss_pred EeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcceEEE
Q 011791 272 FSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVA 351 (477)
Q Consensus 272 F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~l 351 (477)
+++++|+.|......++++.+.++ +++-.+... +. .++ ..|||.++|++ +
T Consensus 5 v~~~~C~~C~~~~~~~~~~~~~~~-----i~~ei~~~~-~~----------------------~~~-~~ygv~~vPal-v 54 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLLKEAAEELG-----IEVEIIDIE-DF----------------------EEI-EKYGVMSVPAL-V 54 (76)
T ss_dssp EECSSCTTHHHHHHHHHHHHHHTT-----EEEEEEETT-TH----------------------HHH-HHTT-SSSSEE-E
T ss_pred EeCCCCCCcHHHHHHHHHHHHhcC-----CeEEEEEcc-CH----------------------HHH-HHcCCCCCCEE-E
Confidence 357779999999998888887774 334333442 32 245 88999999999 5
Q ss_pred ECCCCcEEEec
Q 011791 352 IGPSGRTITKE 362 (477)
Q Consensus 352 id~~G~iv~~~ 362 (477)
| ||+++..+
T Consensus 55 I--ng~~~~~G 63 (76)
T PF13192_consen 55 I--NGKVVFVG 63 (76)
T ss_dssp E--TTEEEEES
T ss_pred E--CCEEEEEe
Confidence 6 58887763
|
... |
| >PRK10877 protein disulfide isomerase II DsbC; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0057 Score=57.64 Aligned_cols=88 Identities=22% Similarity=0.373 Sum_probs=55.2
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC----C---------------hhHHHHHHhcCCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR----D---------------QTSFDEFFKGMPW 324 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~----~---------------~~~~~~~~~~~~~ 324 (477)
.||.+++.|.-+.||+|+++.+.+.++.+ . +++|.++.... . ...+.+.+....-
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~ 179 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----L--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDV 179 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc----C--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCC
Confidence 37889999999999999999988876532 2 36665543321 0 0122223322111
Q ss_pred c--eeccCcchhHHHHHhcCCCCcceEEEECCCCcEE
Q 011791 325 L--ALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 359 (477)
Q Consensus 325 ~--~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv 359 (477)
. ......+.+..+++.+||+++|++++ ++|+++
T Consensus 180 ~~~~c~~~v~~~~~la~~lgi~gTPtiv~--~~G~~~ 214 (232)
T PRK10877 180 SPASCDVDIADHYALGVQFGVQGTPAIVL--SNGTLV 214 (232)
T ss_pred CcccccchHHHhHHHHHHcCCccccEEEE--cCCeEe
Confidence 0 01112345678899999999999994 478765
|
|
| >PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0033 Score=45.56 Aligned_cols=59 Identities=17% Similarity=0.361 Sum_probs=41.0
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
++.|+.+||++|++....|.+ . ++.+-.++++.+.+. ...+.+..|..++|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~-------~--~i~y~~~dv~~~~~~-------------------~~~l~~~~g~~~~P~ 52 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE-------K--GIPYEEVDVDEDEEA-------------------REELKELSGVRTVPQ 52 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-------T--TBEEEEEEGGGSHHH-------------------HHHHHHHHSSSSSSE
T ss_pred cEEEEcCCCcCHHHHHHHHHH-------c--CCeeeEcccccchhH-------------------HHHHHHHcCCCccCE
Confidence 467889999999999877743 2 466777777765421 234555559999999
Q ss_pred EEEECCCCcE
Q 011791 349 LVAIGPSGRT 358 (477)
Q Consensus 349 ~~lid~~G~i 358 (477)
+++ +|+.
T Consensus 53 v~i---~g~~ 59 (60)
T PF00462_consen 53 VFI---DGKF 59 (60)
T ss_dssp EEE---TTEE
T ss_pred EEE---CCEE
Confidence 986 4554
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A .... |
| >COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0038 Score=53.41 Aligned_cols=87 Identities=24% Similarity=0.321 Sum_probs=59.3
Q ss_pred CCCCEEEEEEecCCCccchhhHHHH---HHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCC--chhHHHH
Q 011791 103 LEGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFK--DKSREKL 177 (477)
Q Consensus 103 l~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~l 177 (477)
-++|+.++.|-...|+.|..+-..+ .++.+-+++. |.++-+....+... . +..... .....+|
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h---f~~~~l~i~~skpv-~--------f~~g~kee~~s~~EL 107 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH---FSAYYLNISYSKPV-L--------FKVGDKEEKMSTEEL 107 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC---eEEEEEEeccCcce-E--------eecCceeeeecHHHH
Confidence 3579999999999999998776544 3456666654 66776665433210 0 011111 0123589
Q ss_pred HHHcCcccCCeEEEECCCCCcccc
Q 011791 178 ARYFELSTLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 178 ~~~~~v~~~P~~~lid~~G~i~~~ 201 (477)
++.|+|+++|++++.|.+|+.+..
T Consensus 108 a~kf~vrstPtfvFfdk~Gk~Il~ 131 (182)
T COG2143 108 AQKFAVRSTPTFVFFDKTGKTILE 131 (182)
T ss_pred HHHhccccCceEEEEcCCCCEEEe
Confidence 999999999999999999986654
|
|
| >TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0029 Score=47.37 Aligned_cols=55 Identities=16% Similarity=0.284 Sum_probs=39.2
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
+..|+++||++|+...+.|.+ .+ +.+..+.++.+.+. ...+.+.+++.++|+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~--i~~~~vdi~~~~~~-------------------~~~~~~~~~~~~vP~ 53 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KG--IAFEEIDVEKDSAA-------------------REEVLKVLGQRGVPV 53 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CC--CeEEEEeccCCHHH-------------------HHHHHHHhCCCcccE
Confidence 456999999999987776543 34 66777777655432 133567789999999
Q ss_pred EEE
Q 011791 189 LVI 191 (477)
Q Consensus 189 ~~l 191 (477)
+++
T Consensus 54 ~~~ 56 (74)
T TIGR02196 54 IVI 56 (74)
T ss_pred EEE
Confidence 876
|
This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system. |
| >cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0067 Score=55.68 Aligned_cols=88 Identities=20% Similarity=0.342 Sum_probs=54.1
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCCh----------------hHHHHHHhcCCCc-ee
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ----------------TSFDEFFKGMPWL-AL 327 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~----------------~~~~~~~~~~~~~-~~ 327 (477)
+++.++.|+.+.||+|+++.+.+.+ . ...-.+.++.+.+.... ..|.++.....-. ..
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~----~-~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~ 151 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP----N-ADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPA 151 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh----c-cCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCc
Confidence 7899999999999999999998876 1 11123444444443211 1233333222110 11
Q ss_pred ---ccCcchhHHHHHhcCCCCcceEEEECCCCcEE
Q 011791 328 ---PFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 359 (477)
Q Consensus 328 ---p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv 359 (477)
....+.+..+++.+||+++|+++ + ++|+++
T Consensus 152 ~~~~~~i~~~~~l~~~~gi~gtPtii-~-~~G~~~ 184 (197)
T cd03020 152 ASCDNPVAANLALGRQLGVNGTPTIV-L-ADGRVV 184 (197)
T ss_pred cccCchHHHHHHHHHHcCCCcccEEE-E-CCCeEe
Confidence 12234566889999999999998 5 467764
|
They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer. |
| >PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0038 Score=59.74 Aligned_cols=69 Identities=19% Similarity=0.223 Sum_probs=53.2
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+-.|||.||-+.++.|..+...|..|+.+|.. +.++-|...... +...|.+.
T Consensus 146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a~~~~------------------------~~~~f~~~ 197 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRASKCP------------------------ASENFPDK 197 (265)
T ss_dssp T-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEECGCC------------------------TTTTS-TT
T ss_pred CcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEehhccC------------------------cccCCccc
Confidence 45899999999999999999999999999864 667777655321 46678999
Q ss_pred CcceEEEECCCCcEEEec
Q 011791 345 GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~~ 362 (477)
.+|++++| ++|.++...
T Consensus 198 ~LPtllvY-k~G~l~~~~ 214 (265)
T PF02114_consen 198 NLPTLLVY-KNGDLIGNF 214 (265)
T ss_dssp C-SEEEEE-ETTEEEEEE
T ss_pred CCCEEEEE-ECCEEEEeE
Confidence 99999999 799988874
|
Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B. |
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.082 Score=56.16 Aligned_cols=69 Identities=14% Similarity=0.198 Sum_probs=47.6
Q ss_pred CCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcC
Q 011791 263 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 342 (477)
Q Consensus 263 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 342 (477)
+.+..-+..|.+++||+|......+++++.. ++++..-.| |... ..++...|+
T Consensus 114 ~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~----~~~i~~~~i--d~~~---------------------~~~~~~~~~ 166 (517)
T PRK15317 114 LDGDFHFETYVSLSCHNCPDVVQALNLMAVL----NPNITHTMI--DGAL---------------------FQDEVEARN 166 (517)
T ss_pred cCCCeEEEEEEcCCCCCcHHHHHHHHHHHHh----CCCceEEEE--Echh---------------------CHhHHHhcC
Confidence 3345557789999999999888888777654 234555555 4322 236888999
Q ss_pred CCCcceEEEECCCCcEEEe
Q 011791 343 VSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 343 v~~~Pt~~lid~~G~iv~~ 361 (477)
|.++|++++ +|+.+..
T Consensus 167 v~~VP~~~i---~~~~~~~ 182 (517)
T PRK15317 167 IMAVPTVFL---NGEEFGQ 182 (517)
T ss_pred CcccCEEEE---CCcEEEe
Confidence 999999976 3454433
|
|
| >PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0034 Score=55.09 Aligned_cols=79 Identities=22% Similarity=0.239 Sum_probs=39.5
Q ss_pred CCEEEEEEecCCCccchhhHHH-H--HHHHHHHhcCCCcEEEEEEEcCCCH-HHHHHhhcCCCCccccCCchhHHHHHHH
Q 011791 105 GKTIGLYFSMSSYKASAEFTPR-L--VEVYEKLKGKGESFEIVLISLDDEE-ESFKRDLGSMPWLALPFKDKSREKLARY 180 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~-l--~~l~~~~~~~g~~~~vv~is~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (477)
+|+|+|++.++||..|..+... + .++.+.+.+. +|.|-+|.++ .+...... ......
T Consensus 37 ~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~-----FI~VkvDree~Pdid~~y~--------------~~~~~~ 97 (163)
T PF03190_consen 37 NKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN-----FIPVKVDREERPDIDKIYM--------------NAVQAM 97 (163)
T ss_dssp T--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH------EEEEEETTT-HHHHHHHH--------------HHHHHH
T ss_pred CCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC-----EEEEEeccccCccHHHHHH--------------HHHHHh
Confidence 5899999999999999866531 1 2344444433 4555555433 11211110 111123
Q ss_pred cCcccCCeEEEECCCCCccccc
Q 011791 181 FELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 181 ~~v~~~P~~~lid~~G~i~~~~ 202 (477)
.|..+.|++++++++|+.+...
T Consensus 98 ~~~gGwPl~vfltPdg~p~~~~ 119 (163)
T PF03190_consen 98 SGSGGWPLTVFLTPDGKPFFGG 119 (163)
T ss_dssp HS---SSEEEEE-TTS-EEEEE
T ss_pred cCCCCCCceEEECCCCCeeeee
Confidence 3778999999999999987653
|
; PDB: 3IRA_A. |
| >COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0028 Score=65.79 Aligned_cols=75 Identities=19% Similarity=0.219 Sum_probs=51.2
Q ss_pred CCCEEEEEEecCCCccchhhHHHHH-HHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLV-EVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 182 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~-~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (477)
++|+|+|+|+|.||--|+.+-+..- +.....+-.+ ++.+-.|-+ -++....++.+.||
T Consensus 473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~----~vlLqaDvT-----------------~~~p~~~~lLk~~~ 531 (569)
T COG4232 473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD----VVLLQADVT-----------------ANDPAITALLKRLG 531 (569)
T ss_pred CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC----eEEEEeeec-----------------CCCHHHHHHHHHcC
Confidence 3469999999999999998776432 3333333333 344444422 12233467889999
Q ss_pred cccCCeEEEECCCCCcc
Q 011791 183 LSTLPTLVIIGPDGKTL 199 (477)
Q Consensus 183 v~~~P~~~lid~~G~i~ 199 (477)
+-+.|++++++++|+-.
T Consensus 532 ~~G~P~~~ff~~~g~e~ 548 (569)
T COG4232 532 VFGVPTYLFFGPQGSEP 548 (569)
T ss_pred CCCCCEEEEECCCCCcC
Confidence 99999999999988643
|
|
| >KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.01 Score=54.06 Aligned_cols=62 Identities=13% Similarity=0.215 Sum_probs=45.3
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+++.++++|||.||.+|......+..+.+..+. +.++.+..+. ...+++.+.+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~----~~~~k~~a~~-----------------------~~eis~~~~v 68 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKN----AQFLKLEAEE-----------------------FPEISNLIAV 68 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhh----heeeeehhhh-----------------------hhHHHHHHHH
Confidence 568899999999999999888777777776622 3433333221 2457788889
Q ss_pred ccCCeEEEE
Q 011791 184 STLPTLVII 192 (477)
Q Consensus 184 ~~~P~~~li 192 (477)
...|+++.+
T Consensus 69 ~~vp~~~~~ 77 (227)
T KOG0911|consen 69 EAVPYFVFF 77 (227)
T ss_pred hcCceeeee
Confidence 999998877
|
|
| >TIGR02200 GlrX_actino Glutaredoxin-like protein | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.011 Score=44.72 Aligned_cols=63 Identities=16% Similarity=0.241 Sum_probs=37.7
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHH-HcCcccCC
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR-YFELSTLP 187 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~v~~~P 187 (477)
+..||++||++|+...+.|.++ + +++-.+.++.+.... ..+.+ .++...+|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-------~--~~~~~idi~~~~~~~-------------------~~~~~~~~~~~~vP 53 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-------G--AAYEWVDIEEDEGAA-------------------DRVVSVNNGNMTVP 53 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------C--CceEEEeCcCCHhHH-------------------HHHHHHhCCCceeC
Confidence 4579999999999887766443 4 333346666443211 11212 25788999
Q ss_pred eEEEECCCCCcccc
Q 011791 188 TLVIIGPDGKTLHS 201 (477)
Q Consensus 188 ~~~lid~~G~i~~~ 201 (477)
+++ ++ +|+++..
T Consensus 54 ~i~-~~-~g~~l~~ 65 (77)
T TIGR02200 54 TVK-FA-DGSFLTN 65 (77)
T ss_pred EEE-EC-CCeEecC
Confidence 864 44 5665543
|
This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif. |
| >cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0068 Score=47.86 Aligned_cols=81 Identities=22% Similarity=0.295 Sum_probs=48.7
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCCh-------hHHHHHH--hcCC-CceeccCcchhHHHH
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ-------TSFDEFF--KGMP-WLALPFGDARKASLS 338 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~-------~~~~~~~--~~~~-~~~~p~~~d~~~~l~ 338 (477)
+..|+.+.||+|..+.+.+.++...... ++.+....+.-.. ...+... .... ...+.... ....+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~ 76 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG---GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEAL-ADTALA 76 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC---cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHH-HHHHHH
Confidence 4678999999999999999988744433 4777766653211 1111110 0000 00000000 355678
Q ss_pred HhcCCCCcceEEEEC
Q 011791 339 RKFKVSGIPMLVAIG 353 (477)
Q Consensus 339 ~~~~v~~~Pt~~lid 353 (477)
+.+|+.++|++++-|
T Consensus 77 ~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 77 RALGVTGTPTFVVNG 91 (98)
T ss_pred HHcCCCCCCEEEECC
Confidence 889999999999986
|
Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. |
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.026 Score=60.44 Aligned_cols=137 Identities=13% Similarity=0.175 Sum_probs=77.5
Q ss_pred cccccCCChhHHHhHhhhcccCCcceEEEEcCCCeEechhhHHHHHHhC-CCCCCCCHHHHHHHHHHHHHHHHhhhhhhh
Q 011791 3 WLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYG-VEGYPFTVERIKEMKEQEERAKREQSLRSV 81 (477)
Q Consensus 3 w~~~p~~D~~~~~~L~~~f~v~g~Ptl~~~~~~g~~~~~~g~~~i~~~g-~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~ 81 (477)
.+.+-+-|..+++++.++|+|...|++.+++.+|.- .| |+-+| |.++.|++--..
T Consensus 397 ~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~---~~---i~f~g~P~G~Ef~s~i~~------------------ 452 (555)
T TIGR03143 397 KLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNY---TG---LKFHGVPSGHELNSFILA------------------ 452 (555)
T ss_pred cEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcc---cc---eEEEecCccHhHHHHHHH------------------
Confidence 344555566667889999999999999999744431 11 11111 111222111000
Q ss_pred ccCcCCCceecCCCCeEe--------cCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHH
Q 011791 82 LTSHSRDFVISSDGRKIS--------VSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEE 153 (477)
Q Consensus 82 ~g~~~p~fl~~~~g~~v~--------ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~ 153 (477)
+++..|.... +..+.++..+-.|..++|+.|......++++..... + ++.-.|.....
T Consensus 453 --------i~~~~~~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~--i~~~~i~~~~~-- 518 (555)
T TIGR03143 453 --------LYNAAGPGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--N--VEAEMIDVSHF-- 518 (555)
T ss_pred --------HHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--C--ceEEEEECccc--
Confidence 0011111111 123345555667889999999987777777666543 2 44444433322
Q ss_pred HHHHhhcCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCcccc
Q 011791 154 SFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 201 (477)
..+++.|+|.++|++++ ||+++..
T Consensus 519 ---------------------~~~~~~~~v~~vP~~~i---~~~~~~~ 542 (555)
T TIGR03143 519 ---------------------PDLKDEYGIMSVPAIVV---DDQQVYF 542 (555)
T ss_pred ---------------------HHHHHhCCceecCEEEE---CCEEEEe
Confidence 34788999999999877 4554443
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0074 Score=50.26 Aligned_cols=67 Identities=16% Similarity=0.106 Sum_probs=46.2
Q ss_pred CCCEEEEEEecC----CCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHH
Q 011791 104 EGKTIGLYFSMS----SYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 179 (477)
Q Consensus 104 ~gk~vll~F~a~----wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 179 (477)
++|.++|+|+++ ||..|+..+.. .++.+.+.+ . +-+++.++...+ ..+++.
T Consensus 16 e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~-~--fv~w~~dv~~~e---------------------g~~la~ 70 (116)
T cd02991 16 ELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINT-R--MLFWACSVAKPE---------------------GYRVSQ 70 (116)
T ss_pred hCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHc-C--EEEEEEecCChH---------------------HHHHHH
Confidence 579999999999 88999877632 233333433 2 555555554332 256889
Q ss_pred HcCcccCCeEEEECCC
Q 011791 180 YFELSTLPTLVIIGPD 195 (477)
Q Consensus 180 ~~~v~~~P~~~lid~~ 195 (477)
.+++..+|+++++++.
T Consensus 71 ~l~~~~~P~~~~l~~~ 86 (116)
T cd02991 71 ALRERTYPFLAMIMLK 86 (116)
T ss_pred HhCCCCCCEEEEEEec
Confidence 9999999999999543
|
ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis. |
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.16 Score=53.84 Aligned_cols=68 Identities=16% Similarity=0.277 Sum_probs=46.1
Q ss_pred CCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcC
Q 011791 263 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 342 (477)
Q Consensus 263 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 342 (477)
+.+..-+..|..+.||+|......++++... .+++..-.+ |... ..++...|+
T Consensus 115 ~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~----~p~i~~~~i--d~~~---------------------~~~~~~~~~ 167 (515)
T TIGR03140 115 LNGPLHFETYVSLTCQNCPDVVQALNQMALL----NPNISHTMI--DGAL---------------------FQDEVEALG 167 (515)
T ss_pred cCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh----CCCceEEEE--Echh---------------------CHHHHHhcC
Confidence 3455567889999999999877777666554 234554443 3322 236889999
Q ss_pred CCCcceEEEECCCCcEEE
Q 011791 343 VSGIPMLVAIGPSGRTIT 360 (477)
Q Consensus 343 v~~~Pt~~lid~~G~iv~ 360 (477)
+.++|++++ +|+.+.
T Consensus 168 v~~VP~~~i---~~~~~~ 182 (515)
T TIGR03140 168 IQGVPAVFL---NGEEFH 182 (515)
T ss_pred CcccCEEEE---CCcEEE
Confidence 999999986 344443
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.013 Score=45.12 Aligned_cols=63 Identities=22% Similarity=0.353 Sum_probs=41.9
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
++.|+++|||+|....+.|.++.. .++++-++.+.+..+.+ ..+.+..|+.++|.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-------~~~~~~v~~~~~~~~~~------------------~~~~~~~g~~~~P~ 56 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-------KPAVVELDQHEDGSEIQ------------------DYLQELTGQRTVPN 56 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-------CcEEEEEeCCCChHHHH------------------HHHHHHhCCCCCCe
Confidence 467889999999999988877533 24566666654422211 23556678899999
Q ss_pred EEEECCCCcEE
Q 011791 349 LVAIGPSGRTI 359 (477)
Q Consensus 349 ~~lid~~G~iv 359 (477)
+ ++ +|+.+
T Consensus 57 v-~~--~g~~i 64 (82)
T cd03419 57 V-FI--GGKFI 64 (82)
T ss_pred E-EE--CCEEE
Confidence 7 45 46654
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes |
| >cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.017 Score=43.04 Aligned_cols=55 Identities=18% Similarity=0.306 Sum_probs=36.4
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
++.|+++||++|+.....|.+. ++.+..+++|.+... ...+.+..++.++|+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~---------~i~~~~~~i~~~~~~-------------------~~~~~~~~~~~~vP~ 53 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER---------GIPFEEVDVDEDPEA-------------------LEELKKLNGYRSVPV 53 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC---------CCCeEEEeCCCCHHH-------------------HHHHHHHcCCcccCE
Confidence 4678899999999988776542 355666677654321 112334447889999
Q ss_pred EEE
Q 011791 349 LVA 351 (477)
Q Consensus 349 ~~l 351 (477)
+++
T Consensus 54 i~~ 56 (73)
T cd02976 54 VVI 56 (73)
T ss_pred EEE
Confidence 875
|
In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou |
| >cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.029 Score=41.46 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=40.7
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
++.|.++||++|+.....|.+.. +.+..++++.+.+. ...+.+..+...+|+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~---------i~~~~~di~~~~~~-------------------~~~l~~~~~~~~~P~ 53 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG---------IEFEEIDILEDGEL-------------------REELKELSGWPTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC---------CcEEEEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 45688999999999998887542 44556666654421 124555567788997
Q ss_pred EEEECCCCcEEE
Q 011791 349 LVAIGPSGRTIT 360 (477)
Q Consensus 349 ~~lid~~G~iv~ 360 (477)
+++ +|+.+.
T Consensus 54 ~~~---~~~~ig 62 (72)
T cd02066 54 IFI---NGEFIG 62 (72)
T ss_pred EEE---CCEEEe
Confidence 753 566654
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which |
| >PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.021 Score=54.48 Aligned_cols=91 Identities=14% Similarity=0.157 Sum_probs=54.0
Q ss_pred CCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEc---CC-------------CH-HHHHHhhcCCCCc
Q 011791 103 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL---DD-------------EE-ESFKRDLGSMPWL 165 (477)
Q Consensus 103 l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~---D~-------------~~-~~~~~~~~~~~~~ 165 (477)
-.+|.+++.|.-+.||+|+.+.+.+.++.+. | +++|..+.+ .. ++ ..|..+.......
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~----g-~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~ 189 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQQARPWVDS----G-KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKL 189 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHhhc----C-ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhcc
Confidence 3568889999999999999999887765442 2 144443322 11 11 1122222111100
Q ss_pred --cccC--C------chhHHHHHHHcCcccCCeEEEECCCCCc
Q 011791 166 --ALPF--K------DKSREKLARYFELSTLPTLVIIGPDGKT 198 (477)
Q Consensus 166 --~~~~--~------~~~~~~l~~~~~v~~~P~~~lid~~G~i 198 (477)
.-.. . ...+.++.+.+|++++|++++.|.+|.+
T Consensus 190 ~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~ 232 (251)
T PRK11657 190 GLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTL 232 (251)
T ss_pred CCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE
Confidence 0000 1 1223468889999999999999988874
|
|
| >PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.13 Score=46.01 Aligned_cols=130 Identities=22% Similarity=0.309 Sum_probs=77.5
Q ss_pred HHHHHHcCcccCCeEEEECC-CCCccccchhhHHhhcCCCCCCCChhhHHHHHHHHHHHhhhhhhhhhhccCCCcceecc
Q 011791 175 EKLARYFELSTLPTLVIIGP-DGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGK 253 (477)
Q Consensus 175 ~~l~~~~~v~~~P~~~lid~-~G~i~~~~~~~~i~~~g~~a~P~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~p~f~l~~ 253 (477)
..+++.+++.. |++++..+ +++.+.-... .++...+........ .|-+. ..
T Consensus 31 ~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~-----------~~~~~~l~~fI~~~~---------------~P~v~-~~ 82 (184)
T PF13848_consen 31 EELAKKYGIKE-PTIVVYKKFDEKPVVYDGD-----------KFTPEELKKFIKKNS---------------FPLVP-EL 82 (184)
T ss_dssp HHHHHHCTCSS-SEEEEEECTTTSEEEESSS-----------TTSHHHHHHHHHHHS---------------STSCE-EE
T ss_pred HHHHHHhCCCC-CcEEEeccCCCCceecccc-----------cCCHHHHHHHHHHhc---------------ccccc-cc
Confidence 44778899988 99999976 2332221110 124444444432221 12211 22
Q ss_pred CCCceecccCCCCE-EEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcc
Q 011791 254 NGGKVPVSDLAGKT-ILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDA 332 (477)
Q Consensus 254 ~g~~~~l~~~~gk~-vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d 332 (477)
+...+..---.+++ +++.|...-..........+..++++++++ +.++.+..+...
T Consensus 83 t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~---~~f~~~d~~~~~-------------------- 139 (184)
T PF13848_consen 83 TPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK---INFVYVDADDFP-------------------- 139 (184)
T ss_dssp STTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT---SEEEEEETTTTH--------------------
T ss_pred chhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe---EEEEEeehHHhH--------------------
Confidence 22222221123555 777777666677777888888888888765 667777666332
Q ss_pred hhHHHHHhcCCC--CcceEEEECCCCcE
Q 011791 333 RKASLSRKFKVS--GIPMLVAIGPSGRT 358 (477)
Q Consensus 333 ~~~~l~~~~~v~--~~Pt~~lid~~G~i 358 (477)
.+.+.||+. .+|++++++.....
T Consensus 140 ---~~~~~~~i~~~~~P~~vi~~~~~~~ 164 (184)
T PF13848_consen 140 ---RLLKYFGIDEDDLPALVIFDSNKGK 164 (184)
T ss_dssp ---HHHHHTTTTTSSSSEEEEEETTTSE
T ss_pred ---HHHHHcCCCCccCCEEEEEECCCCc
Confidence 467788998 89999999855543
|
... |
| >PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.064 Score=48.83 Aligned_cols=111 Identities=23% Similarity=0.468 Sum_probs=78.8
Q ss_pred CcceeccCCCceecccC-CCCEEEE-E-Ee-----CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHH
Q 011791 247 LDFVVGKNGGKVPVSDL-AGKTILL-Y-FS-----AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 318 (477)
Q Consensus 247 p~f~l~~~g~~~~l~~~-~gk~vll-~-F~-----a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~ 318 (477)
.+++++....+++|+++ .|+-.|| + |- ..-|+.|..+...+.-....+..+ ++.++.|+-. ..+.+..|
T Consensus 47 ~~Y~F~g~~G~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~r--d~tfa~vSra-P~~~i~af 123 (211)
T PF05988_consen 47 KDYVFDGPDGPVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHAR--DTTFAVVSRA-PLEKIEAF 123 (211)
T ss_pred CCeEEeCCCCcccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhC--CceEEEEeCC-CHHHHHHH
Confidence 55777444445888876 6764333 3 32 356999999999997777778776 5788888765 67899999
Q ss_pred HhcCCCceeccCcchhHHHHHhcCC-----CCcceEEEECCCCcEEEe
Q 011791 319 FKGMPWLALPFGDARKASLSRKFKV-----SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 319 ~~~~~~~~~p~~~d~~~~l~~~~~v-----~~~Pt~~lid~~G~iv~~ 361 (477)
.+.|+|. +|..+.....+...|++ ...|.+-+|-++|--|..
T Consensus 124 k~rmGW~-~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg~~Vfh 170 (211)
T PF05988_consen 124 KRRMGWT-FPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDGGRVFH 170 (211)
T ss_pred HHhcCCC-ceEEEcCCCcccccccceeccCCCceeEEEEEEcCCEEEE
Confidence 9999998 99887766677777887 456655444455544444
|
|
| >cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.038 Score=50.68 Aligned_cols=89 Identities=15% Similarity=0.227 Sum_probs=53.4
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCH----------------HHHHHhhcCCCC---
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE----------------ESFKRDLGSMPW--- 164 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~----------------~~~~~~~~~~~~--- 164 (477)
.++..++.|..+.||+|+.+.+.+.+ ...+..+.++.+.+.... +.|.+......-
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~-----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~ 150 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP-----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPP 150 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh-----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCC
Confidence 47889999999999999999987766 222334555555554311 112222221110
Q ss_pred -ccccCCchhHHHHHHHcCcccCCeEEEECCCCCcc
Q 011791 165 -LALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 199 (477)
Q Consensus 165 -~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~ 199 (477)
-...........+++.+|++++|++++- +|+.+
T Consensus 151 ~~~~~~~i~~~~~l~~~~gi~gtPtii~~--~G~~~ 184 (197)
T cd03020 151 AASCDNPVAANLALGRQLGVNGTPTIVLA--DGRVV 184 (197)
T ss_pred ccccCchHHHHHHHHHHcCCCcccEEEEC--CCeEe
Confidence 0111122345678899999999999743 46653
|
They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer. |
| >COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.026 Score=59.83 Aligned_cols=79 Identities=23% Similarity=0.326 Sum_probs=54.1
Q ss_pred CCEEEEEEeCCCChhhHhHhHHH---HHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhc
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 341 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 341 (477)
+|||+|....+||.+|+.|...= .++++-+.+. +|-|.+|+++. |..+..-..+++..
T Consensus 43 dkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~-----FV~IKVDREER--------------PDvD~~Ym~~~q~~ 103 (667)
T COG1331 43 DKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNEN-----FVPVKVDREER--------------PDVDSLYMNASQAI 103 (667)
T ss_pred CCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhC-----ceeeeEChhhc--------------cCHHHHHHHHHHHh
Confidence 79999999999999999986432 2334444433 78889997641 22222223344433
Q ss_pred -CCCCcceEEEECCCCcEEEec
Q 011791 342 -KVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 342 -~v~~~Pt~~lid~~G~iv~~~ 362 (477)
|-.|.|-++|+.|||+.....
T Consensus 104 tG~GGWPLtVfLTPd~kPFfag 125 (667)
T COG1331 104 TGQGGWPLTVFLTPDGKPFFAG 125 (667)
T ss_pred ccCCCCceeEEECCCCceeeee
Confidence 345899999999999998753
|
|
| >PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1 | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.018 Score=53.40 Aligned_cols=67 Identities=18% Similarity=0.270 Sum_probs=56.2
Q ss_pred hhccCcCCCc-eecCCCCe-EecCCCC--CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEE
Q 011791 80 SVLTSHSRDF-VISSDGRK-ISVSDLE--GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLIS 147 (477)
Q Consensus 80 ~~~g~~~p~f-l~~~~g~~-v~ls~l~--gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is 147 (477)
..+|.++||. +++.+|+. .++.|+. +++++|+|.+-.|||-+.-++.++++.++|.+. .+|-+|.|.
T Consensus 73 a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI~ 143 (237)
T PF00837_consen 73 AKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYIE 143 (237)
T ss_pred eeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhHh
Confidence 4568999999 56889988 8998884 789999999999999999999999999999985 236666653
|
97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process |
| >TIGR02190 GlrX-dom Glutaredoxin-family domain | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.028 Score=43.25 Aligned_cols=62 Identities=21% Similarity=0.327 Sum_probs=41.2
Q ss_pred CEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCC
Q 011791 266 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSG 345 (477)
Q Consensus 266 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~ 345 (477)
+.-++.|+.+||++|++....|.+. ++.+..++++.+.. ...+.+..|...
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~---------gi~y~~idi~~~~~--------------------~~~~~~~~g~~~ 57 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK---------GYDFEEIPLGNDAR--------------------GRSLRAVTGATT 57 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc---------CCCcEEEECCCChH--------------------HHHHHHHHCCCC
Confidence 3445678899999999998877532 34455566665432 123455678899
Q ss_pred cceEEEECCCCcEE
Q 011791 346 IPMLVAIGPSGRTI 359 (477)
Q Consensus 346 ~Pt~~lid~~G~iv 359 (477)
+|.++ + +|+.+
T Consensus 58 vP~i~-i--~g~~i 68 (79)
T TIGR02190 58 VPQVF-I--GGKLI 68 (79)
T ss_pred cCeEE-E--CCEEE
Confidence 99996 4 46654
|
This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain. |
| >PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma [] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.1 Score=48.24 Aligned_cols=103 Identities=12% Similarity=0.147 Sum_probs=74.5
Q ss_pred eecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhc-CCcEEEEEEeCCCChhHHH-HHHhcCCCceeccCc--ch
Q 011791 258 VPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKER-NESLEVVFISSDRDQTSFD-EFFKGMPWLALPFGD--AR 333 (477)
Q Consensus 258 ~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~-~~~~~iv~i~~d~~~~~~~-~~~~~~~~~~~p~~~--d~ 333 (477)
.......|+++||.+-..+|..|...+..|+.|..++... ..++.++.|+--.....+. ..+++.--..+|+.. ..
T Consensus 19 ~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r~~~~ipVyqq~~~ 98 (238)
T PF04592_consen 19 DPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRRVSEHIPVYQQDEN 98 (238)
T ss_pred hHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHhCCCCCceecCCcc
Confidence 4455667999999999999999999999999999999865 4578888887543333333 233333324577763 24
Q ss_pred hHHHHHhcCCCCcceEEEECCCCcEEEe
Q 011791 334 KASLSRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 334 ~~~l~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
...+...++-.. =-++|+|+-|++.+.
T Consensus 99 q~dvW~~L~G~k-dD~~iyDRCGrL~~~ 125 (238)
T PF04592_consen 99 QPDVWELLNGSK-DDFLIYDRCGRLTYH 125 (238)
T ss_pred ccCHHHHhCCCc-CcEEEEeccCcEEEE
Confidence 456777776543 368999999999887
|
It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding |
| >PRK10877 protein disulfide isomerase II DsbC; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.055 Score=50.99 Aligned_cols=88 Identities=10% Similarity=0.178 Sum_probs=53.5
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC----C---------------HHHHHHhhcCCC-
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD----E---------------EESFKRDLGSMP- 163 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~----~---------------~~~~~~~~~~~~- 163 (477)
.||.+++.|..+.||+|+...+.|.++- +.| ++|.++...- + ...|.+.+....
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~----~~~--v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~ 179 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYN----ALG--ITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDV 179 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHh----cCC--eEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCC
Confidence 5788999999999999999988876553 345 5665543221 1 111222222111
Q ss_pred -CccccCCchhHHHHHHHcCcccCCeEEEECCCCCcc
Q 011791 164 -WLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 199 (477)
Q Consensus 164 -~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~ 199 (477)
-...........++++.+||+++|++++- +|+.+
T Consensus 180 ~~~~c~~~v~~~~~la~~lgi~gTPtiv~~--~G~~~ 214 (232)
T PRK10877 180 SPASCDVDIADHYALGVQFGVQGTPAIVLS--NGTLV 214 (232)
T ss_pred CcccccchHHHhHHHHHHcCCccccEEEEc--CCeEe
Confidence 11111122345688999999999998864 56654
|
|
| >PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.056 Score=38.96 Aligned_cols=55 Identities=22% Similarity=0.346 Sum_probs=36.5
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
++.|+.+||++|......| ++.| +.+-.+.++.+.+. ...+.+..|...+|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L-------~~~~--i~y~~~dv~~~~~~-------------------~~~l~~~~g~~~~P~ 52 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL-------DEKG--IPYEEVDVDEDEEA-------------------REELKELSGVRTVPQ 52 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH-------HHTT--BEEEEEEGGGSHHH-------------------HHHHHHHHSSSSSSE
T ss_pred cEEEEcCCCcCHHHHHHHH-------HHcC--CeeeEcccccchhH-------------------HHHHHHHcCCCccCE
Confidence 3568999999998766544 4445 55556666655321 234555558999999
Q ss_pred EEE
Q 011791 189 LVI 191 (477)
Q Consensus 189 ~~l 191 (477)
+++
T Consensus 53 v~i 55 (60)
T PF00462_consen 53 VFI 55 (60)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A .... |
| >PHA03050 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.025 Score=46.45 Aligned_cols=66 Identities=21% Similarity=0.277 Sum_probs=39.0
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
++.|..+|||+|++....|.++.-+. ..++++-|.-..+..++ ...+.+..|.+.+|+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~----~~~~~i~i~~~~~~~~~------------------~~~l~~~tG~~tVP~ 72 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKR----GAYEIVDIKEFKPENEL------------------RDYFEQITGGRTVPR 72 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCc----CCcEEEECCCCCCCHHH------------------HHHHHHHcCCCCcCE
Confidence 56788999999999988776542111 12444444321122222 234556668889999
Q ss_pred EEEECCCCcEE
Q 011791 349 LVAIGPSGRTI 359 (477)
Q Consensus 349 ~~lid~~G~iv 359 (477)
+ +|+ |+.+
T Consensus 73 I-fI~--g~~i 80 (108)
T PHA03050 73 I-FFG--KTSI 80 (108)
T ss_pred E-EEC--CEEE
Confidence 8 553 6655
|
|
| >PRK10329 glutaredoxin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.16 Score=39.24 Aligned_cols=54 Identities=19% Similarity=0.346 Sum_probs=36.0
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
+..|..+||++|.+....|.+ + ++.+-.++++.+.+.. ...+..|...+|+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~--gI~~~~idi~~~~~~~--------------------~~~~~~g~~~vPv 53 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------R--GFDFEMINVDRVPEAA--------------------ETLRAQGFRQLPV 53 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------C--CCceEEEECCCCHHHH--------------------HHHHHcCCCCcCE
Confidence 456788999999998877743 2 4666667777554321 1223347789999
Q ss_pred EEE
Q 011791 349 LVA 351 (477)
Q Consensus 349 ~~l 351 (477)
+++
T Consensus 54 v~i 56 (81)
T PRK10329 54 VIA 56 (81)
T ss_pred EEE
Confidence 864
|
|
| >PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.37 Score=41.85 Aligned_cols=123 Identities=10% Similarity=0.157 Sum_probs=74.1
Q ss_pred cCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHH-HHhcCCcEEEEE-EeCCCC--------hhHHHHHHhcC
Q 011791 253 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKK-IKERNESLEVVF-ISSDRD--------QTSFDEFFKGM 322 (477)
Q Consensus 253 ~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-~~~~~~~~~iv~-i~~d~~--------~~~~~~~~~~~ 322 (477)
...+..+.+.+.||+-+|..-|---..=....|.+..+.+. |... ..+... |+.|+. ....++--+++
T Consensus 25 ~~y~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d--~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~ 102 (160)
T PF09695_consen 25 ISYQPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHD--KYQTTTIINLDDAIWGTGGFVRSSAEDSKKEF 102 (160)
T ss_pred ccccccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCcc--ceeEEEEEecccccccchHHHHHHHHHhhhhC
Confidence 34456667788999988888776544444455555555443 4422 344333 355532 12333333455
Q ss_pred CCceeccCcchhHHHHHhcCCCC-cceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHH
Q 011791 323 PWLALPFGDARKASLSRKFKVSG-IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYN 390 (477)
Q Consensus 323 ~~~~~p~~~d~~~~l~~~~~v~~-~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~ 390 (477)
||..+-+ |.++.+.+.++... --.++++|++|+|+.... +.+++.++++.++-++
T Consensus 103 p~s~~vl--D~~G~~~~aW~L~~~~SaiiVlDK~G~V~F~k~-----------G~Ls~~Ev~qVi~Ll~ 158 (160)
T PF09695_consen 103 PWSQFVL--DSNGVVRKAWQLQEESSAIIVLDKQGKVQFVKE-----------GALSPAEVQQVIALLK 158 (160)
T ss_pred CCcEEEE--cCCCceeccccCCCCCceEEEEcCCccEEEEEC-----------CCCCHHHHHHHHHHHh
Confidence 6655433 44455666666652 246889999999998743 4788888887776654
|
|
| >PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.078 Score=40.39 Aligned_cols=58 Identities=26% Similarity=0.415 Sum_probs=38.4
Q ss_pred ecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCeEEEE
Q 011791 113 SMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVII 192 (477)
Q Consensus 113 ~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~li 192 (477)
.+++|+.|......++++...+ |.+++++- . .+ ...+ ..||+.++|++++
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~---~i~~ei~~--~-~~----------------------~~~~-~~ygv~~vPalvI- 55 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEEL---GIEVEIID--I-ED----------------------FEEI-EKYGVMSVPALVI- 55 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHT---TEEEEEEE--T-TT----------------------HHHH-HHTT-SSSSEEEE-
T ss_pred eCCCCCCcHHHHHHHHHHHHhc---CCeEEEEE--c-cC----------------------HHHH-HHcCCCCCCEEEE-
Confidence 5677999998888888777776 32244433 2 11 1334 8999999999855
Q ss_pred CCCCCccccc
Q 011791 193 GPDGKTLHSN 202 (477)
Q Consensus 193 d~~G~i~~~~ 202 (477)
||+++..+
T Consensus 56 --ng~~~~~G 63 (76)
T PF13192_consen 56 --NGKVVFVG 63 (76)
T ss_dssp --TTEEEEES
T ss_pred --CCEEEEEe
Confidence 57776655
|
... |
| >KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.05 Score=49.30 Aligned_cols=92 Identities=22% Similarity=0.314 Sum_probs=61.1
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc-
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL- 183 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v- 183 (477)
.++.+|.|+|.|.+-|+.+.|.+.++..+|...+.+|-=|=|..= ...+.+|+|
T Consensus 144 ~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrf-------------------------pd~a~kfris 198 (265)
T KOG0914|consen 144 RTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRF-------------------------PDVAAKFRIS 198 (265)
T ss_pred ceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccC-------------------------cChHHheeec
Confidence 357899999999999999999999999999887643433222211 113445554
Q ss_pred -----ccCCeEEEECCCCCccccchhhHHhhcC-CCCCCCChhhHHH
Q 011791 184 -----STLPTLVIIGPDGKTLHSNVAEAIEEHG-VGAFPFTPEKFAE 224 (477)
Q Consensus 184 -----~~~P~~~lid~~G~i~~~~~~~~i~~~g-~~a~P~~~~~~~~ 224 (477)
+.+||++++. +|+-+.+. ..++..| ...|||+.+.+..
T Consensus 199 ~s~~srQLPT~ilFq-~gkE~~Rr--P~vd~~gra~s~~fSeenv~~ 242 (265)
T KOG0914|consen 199 LSPGSRQLPTYILFQ-KGKEVSRR--PDVDVKGRAVSFPFSEENVCQ 242 (265)
T ss_pred cCcccccCCeEEEEc-cchhhhcC--ccccccCCcccccccHHHHHH
Confidence 6689999996 56544432 2334343 3458888776543
|
|
| >TIGR02181 GRX_bact Glutaredoxin, GrxC family | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.052 Score=41.57 Aligned_cols=59 Identities=15% Similarity=0.275 Sum_probs=37.7
Q ss_pred EEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcceE
Q 011791 270 LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPML 349 (477)
Q Consensus 270 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~ 349 (477)
..|+.+|||+|......|++. ++.+-.++++.+.+.. .++.+..|..++|++
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~---------~i~~~~~di~~~~~~~-------------------~~~~~~~g~~~vP~i 53 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK---------GVTFTEIRVDGDPALR-------------------DEMMQRSGRRTVPQI 53 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc---------CCCcEEEEecCCHHHH-------------------HHHHHHhCCCCcCEE
Confidence 467889999999999888653 2334445555443221 234455678899997
Q ss_pred EEECCCCcEE
Q 011791 350 VAIGPSGRTI 359 (477)
Q Consensus 350 ~lid~~G~iv 359 (477)
++ +|+.+
T Consensus 54 -~i--~g~~i 60 (79)
T TIGR02181 54 -FI--GDVHV 60 (79)
T ss_pred -EE--CCEEE
Confidence 55 35544
|
This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. |
| >cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.072 Score=39.96 Aligned_cols=59 Identities=24% Similarity=0.309 Sum_probs=38.6
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
++.|..+||++|.+....|.+. ++.+..++++.+.. ...+.+..|...+|.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~---------~i~~~~~~v~~~~~--------------------~~~~~~~~g~~~vP~ 53 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN---------GISYEEIPLGKDIT--------------------GRSLRAVTGAMTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc---------CCCcEEEECCCChh--------------------HHHHHHHhCCCCcCe
Confidence 4668889999999998777642 34455556664431 123455568899999
Q ss_pred EEEECCCCcEE
Q 011791 349 LVAIGPSGRTI 359 (477)
Q Consensus 349 ~~lid~~G~iv 359 (477)
+ ++| |+.+
T Consensus 54 i-fi~--g~~i 61 (72)
T cd03029 54 V-FID--GELI 61 (72)
T ss_pred E-EEC--CEEE
Confidence 7 564 5554
|
PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate. |
| >cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.081 Score=39.87 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=38.2
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC-Ccc
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS-GIP 347 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~-~~P 347 (477)
+..|+.+||++|......|++. ++.+-.++++.+.+.. ..+.+..+.. ++|
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~---------~i~~~~i~i~~~~~~~-------------------~~~~~~~~~~~~vP 53 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK---------GVDYEEIDVDGDPALR-------------------EEMINRSGGRRTVP 53 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC---------CCcEEEEECCCCHHHH-------------------HHHHHHhCCCCccC
Confidence 4568889999999998877652 3455566666553321 2344455666 899
Q ss_pred eEEEECCCCcEE
Q 011791 348 MLVAIGPSGRTI 359 (477)
Q Consensus 348 t~~lid~~G~iv 359 (477)
.+ ++ +|+.+
T Consensus 54 ~v-~i--~g~~i 62 (75)
T cd03418 54 QI-FI--GDVHI 62 (75)
T ss_pred EE-EE--CCEEE
Confidence 76 45 35554
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i |
| >cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.091 Score=41.23 Aligned_cols=80 Identities=19% Similarity=0.108 Sum_probs=46.8
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEc--CCC----HHHHHHhhc---C--CCCccccCCchhHHHH
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL--DDE----EESFKRDLG---S--MPWLALPFKDKSREKL 177 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~--D~~----~~~~~~~~~---~--~~~~~~~~~~~~~~~l 177 (477)
+..|+...||.|....+.+.++.....+ + +.+..+.+ ... .......+. . ..|-..... ....+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~ 75 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG-G--VRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEAL--ADTAL 75 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC-c--EEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHH--HHHHH
Confidence 3578999999999999999888744333 2 66666554 322 111111100 0 000000000 34567
Q ss_pred HHHcCcccCCeEEEEC
Q 011791 178 ARYFELSTLPTLVIIG 193 (477)
Q Consensus 178 ~~~~~v~~~P~~~lid 193 (477)
.+.+|+.++|++++-|
T Consensus 76 ~~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 76 ARALGVTGTPTFVVNG 91 (98)
T ss_pred HHHcCCCCCCEEEECC
Confidence 8899999999998866
|
Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. |
| >cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.07 Score=40.94 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=38.6
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
++.|.++|||+|......|.++.. +++++-|..+.+..... ..+.+..|...+|+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-------~~~~~~v~~~~~~~~~~------------------~~~~~~~g~~~~P~ 56 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-------KPAVVELDQHEDGSEIQ------------------DYLQELTGQRTVPN 56 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-------CcEEEEEeCCCChHHHH------------------HHHHHHhCCCCCCe
Confidence 366889999999987776655422 36777777665433222 33556778889999
Q ss_pred EEE
Q 011791 189 LVI 191 (477)
Q Consensus 189 ~~l 191 (477)
+++
T Consensus 57 v~~ 59 (82)
T cd03419 57 VFI 59 (82)
T ss_pred EEE
Confidence 744
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes |
| >TIGR02183 GRXA Glutaredoxin, GrxA family | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.049 Score=42.66 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=27.0
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCC
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD 311 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~ 311 (477)
++.|..+|||+|.+....|.++..++ .++.+..++++.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~----~~i~~~~idi~~~ 40 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIER----ADFEFRYIDIHAE 40 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCccc----CCCcEEEEECCCC
Confidence 56788999999999998887764332 1345666666543
|
This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase. |
| >PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.17 Score=46.16 Aligned_cols=110 Identities=19% Similarity=0.349 Sum_probs=70.9
Q ss_pred CceecCCCCeEecCCC-CCC--EEEEEEe-----cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhh
Q 011791 88 DFVISSDGRKISVSDL-EGK--TIGLYFS-----MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 159 (477)
Q Consensus 88 ~fl~~~~g~~v~ls~l-~gk--~vll~F~-----a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~ 159 (477)
++.++....+++|+++ .|+ .++.+|. ...|+-|...+..+......+..++ +.++.||-. ..+....+-
T Consensus 48 ~Y~F~g~~G~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd--~tfa~vSra-P~~~i~afk 124 (211)
T PF05988_consen 48 DYVFDGPDGPVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARD--TTFAVVSRA-PLEKIEAFK 124 (211)
T ss_pred CeEEeCCCCcccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCC--ceEEEEeCC-CHHHHHHHH
Confidence 4666444445999986 666 4555554 4679999999999988888888887 777777765 455666666
Q ss_pred cCCCCccccCCchhHHHHHHHcCc-----ccCCeEEEECCC-CCcccc
Q 011791 160 GSMPWLALPFKDKSREKLARYFEL-----STLPTLVIIGPD-GKTLHS 201 (477)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~v-----~~~P~~~lid~~-G~i~~~ 201 (477)
+.|.|. +|......+.....|++ ...|.+-++-++ |+|.+.
T Consensus 125 ~rmGW~-~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg~~VfhT 171 (211)
T PF05988_consen 125 RRMGWT-FPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDGGRVFHT 171 (211)
T ss_pred HhcCCC-ceEEEcCCCcccccccceeccCCCceeEEEEEEcCCEEEEE
Confidence 667665 44433333334556666 456765555444 454443
|
|
| >cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.11 Score=39.06 Aligned_cols=61 Identities=23% Similarity=0.252 Sum_probs=39.6
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
++.|..+||++|++....|.+. ++.+..++++.+.+. ..++.+..+...+|.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~---------gi~~~~~di~~~~~~-------------------~~el~~~~g~~~vP~ 54 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK---------GLPYVEINIDIFPER-------------------KAELEERTGSSVVPQ 54 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC---------CCceEEEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 3467789999999998877652 355666677654432 224555566678888
Q ss_pred EEEECCCCcEEE
Q 011791 349 LVAIGPSGRTIT 360 (477)
Q Consensus 349 ~~lid~~G~iv~ 360 (477)
+ ++ +|+.+.
T Consensus 55 v-~i--~~~~iG 63 (73)
T cd03027 55 I-FF--NEKLVG 63 (73)
T ss_pred E-EE--CCEEEe
Confidence 7 45 355543
|
GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions. |
| >TIGR02189 GlrX-like_plant Glutaredoxin-like family | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.11 Score=41.79 Aligned_cols=63 Identities=17% Similarity=0.353 Sum_probs=37.5
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
++.|..+|||+|++....|.++ ++.+-.+++|.+.+. .+. ...+.+..|...+|.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~---------~i~~~~vdid~~~~~-~~~---------------~~~l~~~tg~~tvP~ 64 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL---------GVNPAVHEIDKEPAG-KDI---------------ENALSRLGCSPAVPA 64 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc---------CCCCEEEEcCCCccH-HHH---------------HHHHHHhcCCCCcCe
Confidence 4568889999999988766543 132334555543221 000 123455567889999
Q ss_pred EEEECCCCcEE
Q 011791 349 LVAIGPSGRTI 359 (477)
Q Consensus 349 ~~lid~~G~iv 359 (477)
+ ++ +|+.+
T Consensus 65 V-fi--~g~~i 72 (99)
T TIGR02189 65 V-FV--GGKLV 72 (99)
T ss_pred E-EE--CCEEE
Confidence 7 56 35554
|
This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa. |
| >PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.2 Score=40.57 Aligned_cols=75 Identities=15% Similarity=0.344 Sum_probs=53.1
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
.++++|+=.++.|+-+......+++.++...+. +.+.++.+-...+ -...+++.|||.
T Consensus 19 ~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~---~~~y~l~v~~~R~-------------------vSn~IAe~~~V~ 76 (105)
T PF11009_consen 19 EKPVLIFKHSTRCPISAMALREFEKFWEESPDE---IPVYYLDVIEYRP-------------------VSNAIAEDFGVK 76 (105)
T ss_dssp -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGGGHH-------------------HHHHHHHHHT--
T ss_pred cCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc---ceEEEEEEEeCch-------------------hHHHHHHHhCCC
Confidence 688889888999999999999998888776543 7788887754331 145789999997
Q ss_pred -CcceEEEECCCCcEEEec
Q 011791 345 -GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 345 -~~Pt~~lid~~G~iv~~~ 362 (477)
.-|-+++| ++|++++..
T Consensus 77 HeSPQ~ili-~~g~~v~~a 94 (105)
T PF11009_consen 77 HESPQVILI-KNGKVVWHA 94 (105)
T ss_dssp --SSEEEEE-ETTEEEEEE
T ss_pred cCCCcEEEE-ECCEEEEEC
Confidence 77999999 899999874
|
The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A. |
| >TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.1 Score=39.23 Aligned_cols=53 Identities=17% Similarity=0.296 Sum_probs=34.8
Q ss_pred EEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcceE
Q 011791 270 LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPML 349 (477)
Q Consensus 270 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~ 349 (477)
..|..++|++|++....|.+. ++.+-.++++.+.+.. ..+. ..|..++|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~---------~i~~~~~di~~~~~~~-------------------~~~~-~~g~~~vP~v 52 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH---------GIAFEEINIDEQPEAI-------------------DYVK-AQGFRQVPVI 52 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC---------CCceEEEECCCCHHHH-------------------HHHH-HcCCcccCEE
Confidence 457789999999998888642 3556666776554311 1222 3478899997
Q ss_pred EE
Q 011791 350 VA 351 (477)
Q Consensus 350 ~l 351 (477)
++
T Consensus 53 ~~ 54 (72)
T TIGR02194 53 VA 54 (72)
T ss_pred EE
Confidence 54
|
NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase. |
| >PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.34 Score=46.07 Aligned_cols=128 Identities=13% Similarity=0.151 Sum_probs=76.6
Q ss_pred Cccee-ccCCCceeccc-CCCCEEEEEEeC-CCChhhHhHhHHHH-HHHHHHHhc-CCcEEEEEEeCCCChhHHHHHHh-
Q 011791 247 LDFVV-GKNGGKVPVSD-LAGKTILLYFSA-HWCPPCRAFLPKLI-DAYKKIKER-NESLEVVFISSDRDQTSFDEFFK- 320 (477)
Q Consensus 247 p~f~l-~~~g~~~~l~~-~~gk~vll~F~a-~wC~~C~~~~p~l~-~l~~~~~~~-~~~~~iv~i~~d~~~~~~~~~~~- 320 (477)
|++.- +++|+.+++.+ ++||+.||..+. .|-..|.. .+. ...++|... +..+++|-|++-.+. ++.++.
T Consensus 102 P~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~---sw~~p~~~~~~~~~~~~~q~v~In~~e~~--~k~~l~~ 176 (252)
T PF05176_consen 102 PNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVD---SWTSPFLEDFLQEPYGRVQIVEINLIENW--LKSWLVK 176 (252)
T ss_pred CCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHH---HHhhHHHHHHhhCCCCceEEEEEecchHH--HHHHHHH
Confidence 77776 78888887755 589976665554 34333332 222 233444332 236899999886432 222222
Q ss_pred ----cC-------CCceeccCcch--hHHHHHhcCCC--CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHH
Q 011791 321 ----GM-------PWLALPFGDAR--KASLSRKFKVS--GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEI 385 (477)
Q Consensus 321 ----~~-------~~~~~p~~~d~--~~~l~~~~~v~--~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l 385 (477)
.+ .|..+-+..+. ...+.+.+++. -+..++|+|++|+|++... +.-+++.++.|
T Consensus 177 ~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWags-----------G~At~~E~~~L 245 (252)
T PF05176_consen 177 LFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWAGS-----------GPATPEELESL 245 (252)
T ss_pred HHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeCcc-----------CCCCHHHHHHH
Confidence 11 12222222222 44677778875 5678999999999999843 35578888888
Q ss_pred HHHHH
Q 011791 386 DGQYN 390 (477)
Q Consensus 386 ~~~~~ 390 (477)
.+.++
T Consensus 246 ~k~~~ 250 (252)
T PF05176_consen 246 WKCVK 250 (252)
T ss_pred HHHHh
Confidence 77664
|
A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane |
| >PRK11200 grxA glutaredoxin 1; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.09 Score=40.93 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=30.1
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCC
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE 151 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~ 151 (477)
++.|+.+||++|......|.++..+++ + +.+..+.++.+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~--~--i~~~~idi~~~ 41 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD--D--FDYRYVDIHAE 41 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc--C--CcEEEEECCCC
Confidence 567899999999999999988887653 3 56666776654
|
|
| >KOG3425 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.068 Score=43.77 Aligned_cols=71 Identities=20% Similarity=0.224 Sum_probs=42.7
Q ss_pred CCEEEEEEec--------CCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHH
Q 011791 105 GKTIGLYFSM--------SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREK 176 (477)
Q Consensus 105 gk~vll~F~a--------~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (477)
|+.+.++|.+ +|||.|.+..|.+.+..+.. ++++.+|-|-+- +++.|+. ....
T Consensus 25 ~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~a---p~~~~~v~v~VG-~rp~Wk~---------------p~n~ 85 (128)
T KOG3425|consen 25 GKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHA---PEDVHFVHVYVG-NRPYWKD---------------PANP 85 (128)
T ss_pred CceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhC---CCceEEEEEEec-CCCcccC---------------CCCc
Confidence 4556666664 69999999999877776643 333666666554 2222321 1111
Q ss_pred HHHHcCc-ccCCeEEEECC
Q 011791 177 LARYFEL-STLPTLVIIGP 194 (477)
Q Consensus 177 l~~~~~v-~~~P~~~lid~ 194 (477)
....+++ .++||++=.+.
T Consensus 86 FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 86 FRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred cccCCCceeecceeeEEcC
Confidence 2234444 89999987764
|
|
| >cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.066 Score=46.35 Aligned_cols=40 Identities=25% Similarity=0.410 Sum_probs=32.0
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS 308 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~ 308 (477)
++++++.|+.++||+|+.+.|.+.++..+++ ++.+++..+
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~----~~~~~~~~~ 44 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDP----DVRVVFKEF 44 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCC----CceEEEEeC
Confidence 6889999999999999999999988776653 355665544
|
It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown. |
| >PRK10638 glutaredoxin 3; Provisional | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.2 Score=38.73 Aligned_cols=61 Identities=16% Similarity=0.296 Sum_probs=39.0
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
+..|..+||++|++....|.+. ++.+..++++.+.+. ...+.+..+...+|+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~---------gi~y~~~dv~~~~~~-------------------~~~l~~~~g~~~vP~ 55 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK---------GVSFQEIPIDGDAAK-------------------REEMIKRSGRTTVPQ 55 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc---------CCCcEEEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 4567789999999998877653 244445566644321 124555667889997
Q ss_pred EEEECCCCcEEE
Q 011791 349 LVAIGPSGRTIT 360 (477)
Q Consensus 349 ~~lid~~G~iv~ 360 (477)
+ ++ +|+.+.
T Consensus 56 i-~~--~g~~ig 64 (83)
T PRK10638 56 I-FI--DAQHIG 64 (83)
T ss_pred E-EE--CCEEEe
Confidence 7 44 466653
|
|
| >cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.16 Score=40.10 Aligned_cols=65 Identities=14% Similarity=0.227 Sum_probs=40.1
Q ss_pred CCCEEEEEEeC----CCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHH
Q 011791 264 AGKTILLYFSA----HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 339 (477)
Q Consensus 264 ~gk~vll~F~a----~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~ 339 (477)
++++|+|+--+ +||++|.+....|.+.. +.+..++++.+.+ . ...+.+
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~---------i~y~~idv~~~~~-~------------------~~~l~~ 57 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLG---------VDFGTFDILEDEE-V------------------RQGLKE 57 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC---------CCeEEEEcCCCHH-H------------------HHHHHH
Confidence 35666665443 79999999887776542 3344445554432 1 234556
Q ss_pred hcCCCCcceEEEECCCCcEE
Q 011791 340 KFKVSGIPMLVAIGPSGRTI 359 (477)
Q Consensus 340 ~~~v~~~Pt~~lid~~G~iv 359 (477)
..|...+|.+ ++ +|+.+
T Consensus 58 ~~g~~tvP~v-fi--~g~~i 74 (90)
T cd03028 58 YSNWPTFPQL-YV--NGELV 74 (90)
T ss_pred HhCCCCCCEE-EE--CCEEE
Confidence 6688899997 55 36654
|
The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein |
| >TIGR00365 monothiol glutaredoxin, Grx4 family | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.16 Score=40.76 Aligned_cols=64 Identities=14% Similarity=0.266 Sum_probs=39.4
Q ss_pred CCEEEEEEe----CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHh
Q 011791 265 GKTILLYFS----AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 340 (477)
Q Consensus 265 gk~vll~F~----a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 340 (477)
.+.|+|+-. ++|||+|.+....|.++ ++.+..++++.+.+ . ...+.+.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~---------~i~~~~~di~~~~~-~------------------~~~l~~~ 62 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC---------GVPFAYVNVLEDPE-I------------------RQGIKEY 62 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc---------CCCEEEEECCCCHH-H------------------HHHHHHH
Confidence 455666554 38999999998777653 23444556654432 1 1245555
Q ss_pred cCCCCcceEEEECCCCcEE
Q 011791 341 FKVSGIPMLVAIGPSGRTI 359 (477)
Q Consensus 341 ~~v~~~Pt~~lid~~G~iv 359 (477)
.|...+|.++ || |+.+
T Consensus 63 tg~~tvP~vf-i~--g~~i 78 (97)
T TIGR00365 63 SNWPTIPQLY-VK--GEFV 78 (97)
T ss_pred hCCCCCCEEE-EC--CEEE
Confidence 6778899885 53 6654
|
The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation. |
| >COG4312 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.19 Score=45.74 Aligned_cols=93 Identities=22% Similarity=0.465 Sum_probs=68.1
Q ss_pred CcceeccCCCceecccC-CCCEEEEE---EeCC----CChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHH
Q 011791 247 LDFVVGKNGGKVPVSDL-AGKTILLY---FSAH----WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 318 (477)
Q Consensus 247 p~f~l~~~g~~~~l~~~-~gk~vll~---F~a~----wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~ 318 (477)
.+++++....+.+|++| .||-.||. +++| -|+.|..++..+.-....+... ++.++.|+-- ..+++..|
T Consensus 53 K~Y~Fe~~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~--dv~lv~VsRA-Pl~~l~~~ 129 (247)
T COG4312 53 KDYVFETENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHH--DVTLVAVSRA-PLEELVAY 129 (247)
T ss_pred ceeEeecCCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhc--CceEEEEecC-cHHHHHHH
Confidence 56777555557788776 67754442 3344 5999999999997777777755 6888888754 67899999
Q ss_pred HhcCCCceeccCcchhHHHHHhcCC
Q 011791 319 FKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 319 ~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+.|+|. ||..+.....+.+.|+|
T Consensus 130 k~rmGW~-f~w~Ss~~s~Fn~Df~v 153 (247)
T COG4312 130 KRRMGWQ-FPWVSSTDSDFNRDFQV 153 (247)
T ss_pred HHhcCCc-ceeEeccCccccccccc
Confidence 9999998 88877666666666755
|
|
| >KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.088 Score=46.96 Aligned_cols=70 Identities=14% Similarity=0.222 Sum_probs=56.3
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
+..-|++.||-+.-..|+-+-..|..+++++-+ ..+|-|+....+ -+..+++|
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e----TrFikvnae~~P-----------------------Flv~kL~I 135 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE----TRFIKVNAEKAP-----------------------FLVTKLNI 135 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhccc----ceEEEEecccCc-----------------------eeeeeeee
Confidence 467899999999999999999999999888632 345555544332 47889999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
+.+|++.++ ++|+.+.+
T Consensus 136 kVLP~v~l~-k~g~~~D~ 152 (211)
T KOG1672|consen 136 KVLPTVALF-KNGKTVDY 152 (211)
T ss_pred eEeeeEEEE-EcCEEEEE
Confidence 999999999 89988876
|
|
| >PRK11509 hydrogenase-1 operon protein HyaE; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.35 Score=41.07 Aligned_cols=60 Identities=10% Similarity=0.216 Sum_probs=44.4
Q ss_pred CccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCC
Q 011791 117 YKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDG 196 (477)
Q Consensus 117 C~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G 196 (477)
++-+....-.|.++.++|.+.. +.++-|.+|.+. .++..|||.++||++++. +|
T Consensus 48 ~~E~~D~avvleELa~e~~~~~--v~~akVDiD~~~-----------------------~LA~~fgV~siPTLl~Fk-dG 101 (132)
T PRK11509 48 TPEVSDNPVMIGELLREFPDYT--WQVAIADLEQSE-----------------------AIGDRFGVFRFPATLVFT-GG 101 (132)
T ss_pred CCccccHHHHHHHHHHHhcCCc--eEEEEEECCCCH-----------------------HHHHHcCCccCCEEEEEE-CC
Confidence 3444455556778888885322 778888887664 489999999999999995 88
Q ss_pred Cccccc
Q 011791 197 KTLHSN 202 (477)
Q Consensus 197 ~i~~~~ 202 (477)
+.+.+.
T Consensus 102 k~v~~i 107 (132)
T PRK11509 102 NYRGVL 107 (132)
T ss_pred EEEEEE
Confidence 877655
|
|
| >cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.22 Score=36.83 Aligned_cols=55 Identities=18% Similarity=0.306 Sum_probs=33.9
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
++.|.++||++|......|.+ .+ +.+..+.+|.+.+.. ..+.+..++..+|+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~--i~~~~~~i~~~~~~~-------------------~~~~~~~~~~~vP~ 53 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RG--IPFEEVDVDEDPEAL-------------------EELKKLNGYRSVPV 53 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CC--CCeEEEeCCCCHHHH-------------------HHHHHHcCCcccCE
Confidence 466889999999976655443 34 455556666543211 22333446788998
Q ss_pred EEE
Q 011791 189 LVI 191 (477)
Q Consensus 189 ~~l 191 (477)
+++
T Consensus 54 i~~ 56 (73)
T cd02976 54 VVI 56 (73)
T ss_pred EEE
Confidence 865
|
In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou |
| >PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.21 Score=43.72 Aligned_cols=46 Identities=22% Similarity=0.323 Sum_probs=36.8
Q ss_pred CCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC
Q 011791 263 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 309 (477)
Q Consensus 263 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d 309 (477)
-.++++|+.|+...||+|..+.+.+.++.+++-+. +.+.+++..+-
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~-~~v~~~~~~~~ 55 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDP-GKVKFVFRPVP 55 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT-TTEEEEEEESS
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCC-CceEEEEEEcc
Confidence 34789999999999999999999999999998221 25888888773
|
... |
| >cd02340 ZZ_NBR1_like Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.034 Score=37.27 Aligned_cols=30 Identities=30% Similarity=0.670 Sum_probs=27.6
Q ss_pred eccCCCCCCCeEEEEcCCC-CCCcccccccc
Q 011791 418 SCDGCDEEGRVWAFSCDEC-DFCLHPNCALG 447 (477)
Q Consensus 418 ~~~~C~~~g~~w~~~~~~~-~~~~~~~~~~~ 447 (477)
.|++|++...+-.|.|.+| +|||+..|...
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~ 32 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVCPDYDLCESCEAK 32 (43)
T ss_pred CCCCCCCcCcCCeEECCCCCCccchHHhhCc
Confidence 5999999999999999999 89999999863
|
Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain. |
| >COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.43 Score=40.90 Aligned_cols=96 Identities=18% Similarity=0.314 Sum_probs=65.8
Q ss_pred CCCCEEEEEEe--CCCChhhHh-HhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCc-eeccCcchhHHHH
Q 011791 263 LAGKTILLYFS--AHWCPPCRA-FLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWL-ALPFGDARKASLS 338 (477)
Q Consensus 263 ~~gk~vll~F~--a~wC~~C~~-~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~-~~p~~~d~~~~l~ 338 (477)
++||.|+| |. +...|.|-. .+|-+.+++.++++++- -+|+-|+++ +.-...++.+..+.- ++.+..|.+.++.
T Consensus 35 f~gKkVvl-f~lPGAFTPTCS~~hlPgY~~~~d~f~~kGV-D~I~cVSVN-D~FVm~AWak~~g~~~~I~fi~Dg~geFT 111 (165)
T COG0678 35 FKGKKVVL-FSLPGAFTPTCSSSHLPGYLELADEFKAKGV-DEIYCVSVN-DAFVMNAWAKSQGGEGNIKFIPDGNGEFT 111 (165)
T ss_pred cCCCEEEE-EeCCCccCCCcccccCccHHHHHHHHHHcCC-ceEEEEEeC-cHHHHHHHHHhcCCCccEEEecCCCchhh
Confidence 36776555 44 456788887 89999999999998732 257777887 445555566555443 6777777777777
Q ss_pred HhcC-----------CCCcceEEEECCCCcEEEec
Q 011791 339 RKFK-----------VSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 339 ~~~~-----------v~~~Pt~~lid~~G~iv~~~ 362 (477)
+..| +++.-.-.++ .||.+....
T Consensus 112 k~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~ 145 (165)
T COG0678 112 KAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLF 145 (165)
T ss_pred hhcCceeecccCCcceeeeeEEEEE-eCCeEEEEE
Confidence 7654 4555667788 789887653
|
|
| >PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.65 Score=41.50 Aligned_cols=67 Identities=28% Similarity=0.539 Sum_probs=43.5
Q ss_pred CCE-EEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 105 GKT-IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 105 gk~-vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++. +++.|..............|..+.++++++ +.++.+..+.. ..+.+.||+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~---~~f~~~d~~~~-----------------------~~~~~~~~i 147 (184)
T PF13848_consen 94 PKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK---INFVYVDADDF-----------------------PRLLKYFGI 147 (184)
T ss_dssp SSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT---SEEEEEETTTT-----------------------HHHHHHTTT
T ss_pred CCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe---EEEEEeehHHh-----------------------HHHHHHcCC
Confidence 344 666676555555566666777777777654 55555554422 336678898
Q ss_pred c--cCCeEEEECCCCC
Q 011791 184 S--TLPTLVIIGPDGK 197 (477)
Q Consensus 184 ~--~~P~~~lid~~G~ 197 (477)
. .+|++++++....
T Consensus 148 ~~~~~P~~vi~~~~~~ 163 (184)
T PF13848_consen 148 DEDDLPALVIFDSNKG 163 (184)
T ss_dssp TTSSSSEEEEEETTTS
T ss_pred CCccCCEEEEEECCCC
Confidence 7 8999999995543
|
... |
| >KOG3414 consensus Component of the U4/U6 | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.52 Score=39.01 Aligned_cols=62 Identities=11% Similarity=0.321 Sum_probs=51.1
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
.|.|+|-|.-.|-|.|..+-..|......+..- ..|..+.+|..+ .+.+.|++.
T Consensus 23 ~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---a~IylvdideV~-----------------------~~~~~~~l~ 76 (142)
T KOG3414|consen 23 ERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---AVIYLVDIDEVP-----------------------DFVKMYELY 76 (142)
T ss_pred ceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc---eEEEEEecchhh-----------------------hhhhhhccc
Confidence 689999999999999999999999999988764 556666777443 578889999
Q ss_pred CcceEEEE
Q 011791 345 GIPMLVAI 352 (477)
Q Consensus 345 ~~Pt~~li 352 (477)
..|+++++
T Consensus 77 ~p~tvmfF 84 (142)
T KOG3414|consen 77 DPPTVMFF 84 (142)
T ss_pred CCceEEEE
Confidence 99986655
|
U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] |
| >cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.2 Score=43.31 Aligned_cols=39 Identities=13% Similarity=0.171 Sum_probs=31.3
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEE
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLI 146 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~i 146 (477)
.++++++.|+..+||+|+.+.|.+.++..++.+ +.+++.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~----~~~~~~ 42 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD----VRVVFK 42 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC----ceEEEE
Confidence 468899999999999999999999888766532 555554
|
It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown. |
| >KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.95 Score=43.60 Aligned_cols=77 Identities=16% Similarity=0.318 Sum_probs=56.2
Q ss_pred cCCCCEEEEEEeC----CCChhhHhHhHHHHHHHHHHHhcCC---cEEEEEEeCCCChhHHHHHHhcCCCceeccCcchh
Q 011791 262 DLAGKTILLYFSA----HWCPPCRAFLPKLIDAYKKIKERNE---SLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARK 334 (477)
Q Consensus 262 ~~~gk~vll~F~a----~wC~~C~~~~p~l~~l~~~~~~~~~---~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~ 334 (477)
.-++=.+++.|.| ..|.-|+.+..++.-+++.+....+ +-.+.+..+|-++ .
T Consensus 57 ~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e---------------------~ 115 (331)
T KOG2603|consen 57 PPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE---------------------S 115 (331)
T ss_pred CCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc---------------------c
Confidence 3345567888887 4699999999999999998875432 2345555555443 3
Q ss_pred HHHHHhcCCCCcceEEEECCC-CcEE
Q 011791 335 ASLSRKFKVSGIPMLVAIGPS-GRTI 359 (477)
Q Consensus 335 ~~l~~~~~v~~~Pt~~lid~~-G~iv 359 (477)
.++.+.++++..|+++++.|. |+..
T Consensus 116 p~~Fq~l~ln~~P~l~~f~P~~~n~~ 141 (331)
T KOG2603|consen 116 PQVFQQLNLNNVPHLVLFSPAKGNKK 141 (331)
T ss_pred HHHHHHhcccCCCeEEEeCCCccccc
Confidence 468999999999999999664 5555
|
|
| >TIGR02189 GlrX-like_plant Glutaredoxin-like family | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.43 Score=38.42 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=33.0
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
++-|..+|||+|......|. +.|.++++ +.+|.+++.. .....+.+..|...+|.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~-------~~~i~~~~--vdid~~~~~~----------------~~~~~l~~~tg~~tvP~ 64 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLL-------TLGVNPAV--HEIDKEPAGK----------------DIENALSRLGCSPAVPA 64 (99)
T ss_pred EEEEECCCCHHHHHHHHHHH-------HcCCCCEE--EEcCCCccHH----------------HHHHHHHHhcCCCCcCe
Confidence 34588899999986555433 23433554 4454332211 11133555567888999
Q ss_pred EEE
Q 011791 189 LVI 191 (477)
Q Consensus 189 ~~l 191 (477)
+++
T Consensus 65 Vfi 67 (99)
T TIGR02189 65 VFV 67 (99)
T ss_pred EEE
Confidence 754
|
This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa. |
| >KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.026 Score=51.79 Aligned_cols=69 Identities=22% Similarity=0.490 Sum_probs=49.2
Q ss_pred EEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCc
Q 011791 267 TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGI 346 (477)
Q Consensus 267 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~ 346 (477)
-.+|.|+|+|||.|....|.|.+.+.--.+ -++.+-.|.+-.+. -+.-+|=|...
T Consensus 41 ewmi~~~ap~~psc~~~~~~~~~~a~~s~d--L~v~va~VDvt~np-----------------------gLsGRF~vtaL 95 (248)
T KOG0913|consen 41 EWMIEFGAPWCPSCSDLIPHLENFATVSLD--LGVKVAKVDVTTNP-----------------------GLSGRFLVTAL 95 (248)
T ss_pred HHHHHhcCCCCccccchHHHHhccCCccCC--CceeEEEEEEEecc-----------------------ccceeeEEEec
Confidence 357899999999999999999876544322 24445444443222 35667888999
Q ss_pred ceEEEECCCCcEEEe
Q 011791 347 PMLVAIGPSGRTITK 361 (477)
Q Consensus 347 Pt~~lid~~G~iv~~ 361 (477)
||++=+ +||.....
T Consensus 96 ptIYHv-kDGeFrry 109 (248)
T KOG0913|consen 96 PTIYHV-KDGEFRRY 109 (248)
T ss_pred ceEEEe-eccccccc
Confidence 999999 89987654
|
|
| >PHA03050 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.26 Score=40.36 Aligned_cols=66 Identities=17% Similarity=0.102 Sum_probs=37.1
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
++.|..+|||+|......|.+. .-....++++-|.-..+... ....+.+.-|...+|+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~----~i~~~~~~~i~i~~~~~~~~------------------~~~~l~~~tG~~tVP~ 72 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKF----SFKRGAYEIVDIKEFKPENE------------------LRDYFEQITGGRTVPR 72 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHc----CCCcCCcEEEECCCCCCCHH------------------HHHHHHHHcCCCCcCE
Confidence 4558999999998665544332 21111355555442112111 2245666678888999
Q ss_pred EEEECCCCCcc
Q 011791 189 LVIIGPDGKTL 199 (477)
Q Consensus 189 ~~lid~~G~i~ 199 (477)
+++ +|+.+
T Consensus 73 IfI---~g~~i 80 (108)
T PHA03050 73 IFF---GKTSI 80 (108)
T ss_pred EEE---CCEEE
Confidence 855 35544
|
|
| >PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma [] | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.51 Score=43.65 Aligned_cols=104 Identities=15% Similarity=0.186 Sum_probs=70.2
Q ss_pred eEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCC-cEEEEEEEcCCCHHHHH-Hhhc-CCCCccccCC--c
Q 011791 97 KISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGE-SFEIVLISLDDEEESFK-RDLG-SMPWLALPFK--D 171 (477)
Q Consensus 97 ~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~-~~~vv~is~D~~~~~~~-~~~~-~~~~~~~~~~--~ 171 (477)
.....+..|++++|-+...+|..|...+..|..|..++...|. ++.++.|+--.....+. ..++ ..+ ..+|.. +
T Consensus 18 ~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r~~-~~ipVyqq~ 96 (238)
T PF04592_consen 18 QDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRRVS-EHIPVYQQD 96 (238)
T ss_pred chHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHhCC-CCCceecCC
Confidence 4566778899999999999999999999999999999998873 56666676543332222 1222 222 223332 2
Q ss_pred hhHHHHHHHcCcccCCeEEEECCCCCccccc
Q 011791 172 KSREKLARYFELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 172 ~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 202 (477)
.....+...++-.. =-++|+|+-|++++.-
T Consensus 97 ~~q~dvW~~L~G~k-dD~~iyDRCGrL~~~i 126 (238)
T PF04592_consen 97 ENQPDVWELLNGSK-DDFLIYDRCGRLTYHI 126 (238)
T ss_pred ccccCHHHHhCCCc-CcEEEEeccCcEEEEe
Confidence 23344666666543 3568899999988764
|
It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding |
| >COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.82 Score=35.18 Aligned_cols=20 Identities=20% Similarity=0.389 Sum_probs=16.4
Q ss_pred EEEEeCCCChhhHhHhHHHH
Q 011791 269 LLYFSAHWCPPCRAFLPKLI 288 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~ 288 (477)
++.|.-++||+|.+....|.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~ 22 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD 22 (80)
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 45677889999999887776
|
|
| >cd02339 ZZ_Mind_bomb Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.1 Score=35.29 Aligned_cols=29 Identities=31% Similarity=0.812 Sum_probs=25.5
Q ss_pred eccCCCCCCC-eEEEEcCCC-CCCccccccc
Q 011791 418 SCDGCDEEGR-VWAFSCDEC-DFCLHPNCAL 446 (477)
Q Consensus 418 ~~~~C~~~g~-~w~~~~~~~-~~~~~~~~~~ 446 (477)
.|++|++... +-.|.|.+| ||||...|..
T Consensus 2 ~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~ 32 (45)
T cd02339 2 ICDTCRKQGIIGIRWKCAECPNYDLCTTCYH 32 (45)
T ss_pred CCCCCCCCCcccCeEECCCCCCccchHHHhC
Confidence 6999996554 899999999 8999999986
|
Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster. |
| >cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.21 Score=44.53 Aligned_cols=41 Identities=27% Similarity=0.437 Sum_probs=33.7
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEe
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS 307 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~ 307 (477)
.+++.|+.|+...||+|+.+.+.+.++.+++..+ +.+..+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~---v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKD---VKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCC---ceEEEcC
Confidence 4789999999999999999999999998887543 5555444
|
It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain. |
| >PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A | Back alignment and domain information |
|---|
Probab=91.74 E-value=0.55 Score=41.01 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=39.2
Q ss_pred ecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC
Q 011791 99 SVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD 150 (477)
Q Consensus 99 ~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~ 150 (477)
.+-.-.++++++.|+...||+|..+.+.+.++.+++-+.| ++.+++..+-.
T Consensus 6 ~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~~~ 56 (162)
T PF13462_consen 6 TIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPVPL 56 (162)
T ss_dssp EES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEESSS
T ss_pred eecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEccc
Confidence 3444566899999999999999999999999999984433 38888887643
|
... |
| >KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.86 Score=36.98 Aligned_cols=63 Identities=22% Similarity=0.375 Sum_probs=36.8
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
+|.|.-+||++|.++...|.. +. ....|+-+.-+.+..++++.+ .+.-+-+.+|.
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~~---v~~~vvELD~~~~g~eiq~~l------------------~~~tg~~tvP~ 70 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----LG---VNPKVVELDEDEDGSEIQKAL------------------KKLTGQRTVPN 70 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----CC---CCCEEEEccCCCCcHHHHHHH------------------HHhcCCCCCCE
Confidence 356888999999996655544 32 234455444443333444333 33335568887
Q ss_pred EEEECCCCcEE
Q 011791 349 LVAIGPSGRTI 359 (477)
Q Consensus 349 ~~lid~~G~iv 359 (477)
+|+ +|+-+
T Consensus 71 vFI---~Gk~i 78 (104)
T KOG1752|consen 71 VFI---GGKFI 78 (104)
T ss_pred EEE---CCEEE
Confidence 766 36666
|
|
| >cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=91.31 E-value=1.5 Score=37.29 Aligned_cols=76 Identities=20% Similarity=0.295 Sum_probs=49.9
Q ss_pred hHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC--CcceEEEECCCCcEE
Q 011791 282 AFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS--GIPMLVAIGPSGRTI 359 (477)
Q Consensus 282 ~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~--~~Pt~~lid~~G~iv 359 (477)
.....|.+++++|+++ .+.+++++.+... .+.+.||+. ++|++++++.++. .
T Consensus 41 ~~~~~l~~vAk~~kgk--~i~Fv~vd~~~~~-----------------------~~~~~fgl~~~~~P~v~i~~~~~~-K 94 (130)
T cd02983 41 KYLEILKSVAEKFKKK--PWGWLWTEAGAQL-----------------------DLEEALNIGGFGYPAMVAINFRKM-K 94 (130)
T ss_pred HHHHHHHHHHHHhcCC--cEEEEEEeCcccH-----------------------HHHHHcCCCccCCCEEEEEecccC-c
Confidence 3577888888888765 3677777776443 478889985 5999999988764 3
Q ss_pred EeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCC
Q 011791 360 TKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGW 396 (477)
Q Consensus 360 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 396 (477)
+.. + ..+++.+ .+.+.+++.+.+.
T Consensus 95 Y~~-------~---~~~~t~e---~i~~Fv~~~l~Gk 118 (130)
T cd02983 95 FAT-------L---KGSFSED---GINEFLRELSYGR 118 (130)
T ss_pred ccc-------c---cCccCHH---HHHHHHHHHHcCC
Confidence 321 0 0245554 4556666666653
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI. |
| >TIGR02190 GlrX-dom Glutaredoxin-family domain | Back alignment and domain information |
|---|
Probab=91.25 E-value=0.67 Score=35.42 Aligned_cols=60 Identities=25% Similarity=0.343 Sum_probs=36.9
Q ss_pred EEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCC
Q 011791 108 IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLP 187 (477)
Q Consensus 108 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 187 (477)
-++.|..+||++|......|. +.|.+++ .+.++.+.+. ..+.+..|...+|
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~-------~~gi~y~--~idi~~~~~~--------------------~~~~~~~g~~~vP 59 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLK-------EKGYDFE--EIPLGNDARG--------------------RSLRAVTGATTVP 59 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHH-------HcCCCcE--EEECCCChHH--------------------HHHHHHHCCCCcC
Confidence 355689999999997766553 3453344 4555544321 1234556788999
Q ss_pred eEEEECCCCCcc
Q 011791 188 TLVIIGPDGKTL 199 (477)
Q Consensus 188 ~~~lid~~G~i~ 199 (477)
.+++ +|+.+
T Consensus 60 ~i~i---~g~~i 68 (79)
T TIGR02190 60 QVFI---GGKLI 68 (79)
T ss_pred eEEE---CCEEE
Confidence 9865 45543
|
This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain. |
| >TIGR02183 GRXA Glutaredoxin, GrxA family | Back alignment and domain information |
|---|
Probab=90.98 E-value=0.57 Score=36.54 Aligned_cols=38 Identities=11% Similarity=0.070 Sum_probs=23.8
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD 150 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~ 150 (477)
++.|..+|||+|......|.++..++. + +.+..+.++.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~--i~~~~idi~~ 39 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA--D--FEFRYIDIHA 39 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC--C--CcEEEEECCC
Confidence 456889999999987766655543221 2 4455555553
|
This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase. |
| >PRK10824 glutaredoxin-4; Provisional | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.43 Score=39.53 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=18.5
Q ss_pred CCEEEEEEeC----CCChhhHhHhHHHHHH
Q 011791 265 GKTILLYFSA----HWCPPCRAFLPKLIDA 290 (477)
Q Consensus 265 gk~vll~F~a----~wC~~C~~~~p~l~~l 290 (477)
.++|+|+--. ||||+|++....|.++
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHc
Confidence 4555665443 6999999998877664
|
|
| >COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.59 E-value=1 Score=48.05 Aligned_cols=77 Identities=23% Similarity=0.264 Sum_probs=48.5
Q ss_pred CCEEEEEEecCCCccchhhHHHH---HHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 181 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (477)
+|+|+|-.-.+||..|..+...- .++.+-+++. +|.|-+|.++. |+.+..-..+++..
T Consensus 43 dkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~-----FV~IKVDREER--------------PDvD~~Ym~~~q~~ 103 (667)
T COG1331 43 DKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNEN-----FVPVKVDREER--------------PDVDSLYMNASQAI 103 (667)
T ss_pred CCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhC-----ceeeeEChhhc--------------cCHHHHHHHHHHHh
Confidence 48999999999999998765310 1333334332 56777776542 23222223344433
Q ss_pred -CcccCCeEEEECCCCCccc
Q 011791 182 -ELSTLPTLVIIGPDGKTLH 200 (477)
Q Consensus 182 -~v~~~P~~~lid~~G~i~~ 200 (477)
|-.+.|.++++-|||+...
T Consensus 104 tG~GGWPLtVfLTPd~kPFf 123 (667)
T COG1331 104 TGQGGWPLTVFLTPDGKPFF 123 (667)
T ss_pred ccCCCCceeEEECCCCceee
Confidence 3467999999999998554
|
|
| >COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.43 E-value=1 Score=33.61 Aligned_cols=73 Identities=18% Similarity=0.355 Sum_probs=46.9
Q ss_pred EEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcceE
Q 011791 270 LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPML 349 (477)
Q Consensus 270 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~ 349 (477)
+.|++..||.|..+...|..+. +..=+|.+-.+-..+++|++-.. +-| .-+-.+.+|--|||.+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~---------v~yd~VeIt~Sm~NlKrFl~lRD--s~~-----~Fd~vk~~gyiGIPal 68 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN---------VDYDFVEITESMANLKRFLHLRD--SRP-----EFDEVKSNGYIGIPAL 68 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC---------CCceeeehhhhhhhHHHHHhhhc--cch-----hHHhhhhcCcccceEE
Confidence 5689999999998877776542 22334455556678888887332 001 1123566788899987
Q ss_pred EEECCCCcEEE
Q 011791 350 VAIGPSGRTIT 360 (477)
Q Consensus 350 ~lid~~G~iv~ 360 (477)
.+= ||++|-
T Consensus 69 l~~--d~~vVl 77 (85)
T COG4545 69 LTD--DGKVVL 77 (85)
T ss_pred EeC--CCcEEE
Confidence 664 677764
|
|
| >PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=89.90 E-value=2.1 Score=35.94 Aligned_cols=70 Identities=14% Similarity=0.287 Sum_probs=49.7
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
.|.|+|-|...|=+.|.++-..|.+.+.+.+.- ..|..+.++.-+ .+.+.|.+.
T Consensus 20 drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~---a~IY~vDi~~Vp-----------------------dfn~~yel~ 73 (133)
T PF02966_consen 20 DRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF---AVIYLVDIDEVP-----------------------DFNQMYELY 73 (133)
T ss_dssp SSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTTH-----------------------CCHHHTTS-
T ss_pred ceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc---eEEEEEEcccch-----------------------hhhcccccC
Confidence 799999999999999999999999999988764 566677777544 466778888
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
.|.++++==+++-+..
T Consensus 74 -dP~tvmFF~rnkhm~v 89 (133)
T PF02966_consen 74 -DPCTVMFFFRNKHMMV 89 (133)
T ss_dssp -SSEEEEEEETTEEEEE
T ss_pred -CCeEEEEEecCeEEEE
Confidence 7753333123444444
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A. |
| >PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=89.84 E-value=1.2 Score=34.20 Aligned_cols=56 Identities=23% Similarity=0.342 Sum_probs=41.8
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
|+.|..+.|+-|......|.++.... .+++..|+++.+. .+..+|+. .+|.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~-----~~~l~~vDI~~d~-----------------------~l~~~Y~~-~IPV 52 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF-----PFELEEVDIDEDP-----------------------ELFEKYGY-RIPV 52 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS-----TCEEEEEETTTTH-----------------------HHHHHSCT-STSE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc-----CceEEEEECCCCH-----------------------HHHHHhcC-CCCE
Confidence 57788999999999988887643332 4788888888654 57889995 7999
Q ss_pred EEEEC
Q 011791 349 LVAIG 353 (477)
Q Consensus 349 ~~lid 353 (477)
+.+-+
T Consensus 53 l~~~~ 57 (81)
T PF05768_consen 53 LHIDG 57 (81)
T ss_dssp EEETT
T ss_pred EEEcC
Confidence 66654
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A. |
| >PRK10329 glutaredoxin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.72 E-value=1.3 Score=34.18 Aligned_cols=54 Identities=17% Similarity=0.319 Sum_probs=33.4
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
+..|..+||++|......| .++| +.+-.+.++.+++... .+ +..|...+|.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L-------~~~g--I~~~~idi~~~~~~~~-------------------~~-~~~g~~~vPv 53 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAM-------ESRG--FDFEMINVDRVPEAAE-------------------TL-RAQGFRQLPV 53 (81)
T ss_pred EEEEeCCCCHhHHHHHHHH-------HHCC--CceEEEECCCCHHHHH-------------------HH-HHcCCCCcCE
Confidence 3568889999998765554 3456 4454556665543222 12 2347788999
Q ss_pred EEE
Q 011791 189 LVI 191 (477)
Q Consensus 189 ~~l 191 (477)
+++
T Consensus 54 v~i 56 (81)
T PRK10329 54 VIA 56 (81)
T ss_pred EEE
Confidence 865
|
|
| >PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle [] | Back alignment and domain information |
|---|
Probab=89.44 E-value=2.5 Score=41.47 Aligned_cols=103 Identities=12% Similarity=0.158 Sum_probs=60.6
Q ss_pred ccCCCceecccCCCCEEEEEEeCCCCh--hhHhH---hHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCce
Q 011791 252 GKNGGKVPVSDLAGKTILLYFSAHWCP--PCRAF---LPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLA 326 (477)
Q Consensus 252 ~~~g~~~~l~~~~gk~vll~F~a~wC~--~C~~~---~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~ 326 (477)
+++.+++.-.-.+-+.++|+|+.+--. ..++. ...+-+|+++.-++ .++.+..|++..+.
T Consensus 38 ~LneKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~-~gigfg~VD~~Kd~-------------- 102 (383)
T PF01216_consen 38 DLNEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLED-KGIGFGMVDSKKDA-------------- 102 (383)
T ss_dssp EE-TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGG-CTEEEEEEETTTTH--------------
T ss_pred EcchhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccc-cCcceEEeccHHHH--------------
Confidence 444444433222356788889886532 22221 12234555554432 37888888877664
Q ss_pred eccCcchhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHc
Q 011791 327 LPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAK 394 (477)
Q Consensus 327 ~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 394 (477)
.+++++|+...++++++ ++|+++..+| ....+.|...|-.++.
T Consensus 103 ---------klAKKLgv~E~~SiyVf-kd~~~IEydG---------------~~saDtLVeFl~dl~e 145 (383)
T PF01216_consen 103 ---------KLAKKLGVEEEGSIYVF-KDGEVIEYDG---------------ERSADTLVEFLLDLLE 145 (383)
T ss_dssp ---------HHHHHHT--STTEEEEE-ETTEEEEE-S-----------------SHHHHHHHHHHHHS
T ss_pred ---------HHHHhcCccccCcEEEE-ECCcEEEecC---------------ccCHHHHHHHHHHhcc
Confidence 69999999999999999 8999998765 2223567777777765
|
It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A. |
| >PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ | Back alignment and domain information |
|---|
Probab=89.16 E-value=3.4 Score=35.97 Aligned_cols=103 Identities=15% Similarity=0.276 Sum_probs=56.8
Q ss_pred CeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHH-HhcCCCcEEEEE-EEcCCCH--------HHHHHhhcCCCCc
Q 011791 96 RKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEK-LKGKGESFEIVL-ISLDDEE--------ESFKRDLGSMPWL 165 (477)
Q Consensus 96 ~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-~~~~g~~~~vv~-is~D~~~--------~~~~~~~~~~~~~ 165 (477)
+..+...+.||+.+|...|-.-..=..-.|.+..+-+. +.. .+++... |+.|+.. ...++.-+++||-
T Consensus 28 ~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~--d~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p~s 105 (160)
T PF09695_consen 28 QPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPH--DKYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFPWS 105 (160)
T ss_pred cccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCc--cceeEEEEEecccccccchHHHHHHHHHhhhhCCCc
Confidence 45556678999988877664322211222333333222 332 3476666 4555421 1222333357887
Q ss_pred cccCCchhHHHHHHHcCccc-CCeEEEECCCCCccccc
Q 011791 166 ALPFKDKSREKLARYFELST-LPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 166 ~~~~~~~~~~~l~~~~~v~~-~P~~~lid~~G~i~~~~ 202 (477)
.+-.+.+ +.+.+.+++.. --.++++|++|+++...
T Consensus 106 ~~vlD~~--G~~~~aW~L~~~~SaiiVlDK~G~V~F~k 141 (160)
T PF09695_consen 106 QFVLDSN--GVVRKAWQLQEESSAIIVLDKQGKVQFVK 141 (160)
T ss_pred EEEEcCC--CceeccccCCCCCceEEEEcCCccEEEEE
Confidence 7644333 23566777743 35788999999998765
|
|
| >TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH | Back alignment and domain information |
|---|
Probab=89.04 E-value=1.4 Score=32.81 Aligned_cols=53 Identities=15% Similarity=0.241 Sum_probs=32.6
Q ss_pred EEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCeE
Q 011791 110 LYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTL 189 (477)
Q Consensus 110 l~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 189 (477)
..|..++|+.|+.....|. +.| +.+-.+.++.+.+.. ..+. ..|...+|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~-------~~~--i~~~~~di~~~~~~~-------------------~~~~-~~g~~~vP~v 52 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALE-------EHG--IAFEEINIDEQPEAI-------------------DYVK-AQGFRQVPVI 52 (72)
T ss_pred EEEeCCCCHHHHHHHHHHH-------HCC--CceEEEECCCCHHHH-------------------HHHH-HcCCcccCEE
Confidence 4577899999997766554 345 444455666554322 1222 3477889996
Q ss_pred EE
Q 011791 190 VI 191 (477)
Q Consensus 190 ~l 191 (477)
++
T Consensus 53 ~~ 54 (72)
T TIGR02194 53 VA 54 (72)
T ss_pred EE
Confidence 55
|
NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase. |
| >cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria | Back alignment and domain information |
|---|
Probab=88.87 E-value=1.4 Score=32.74 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=32.7
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
++.|..+||+.|......|. +.| +.+..+.++.+.. ...+.+..|...+|.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~-------~~~--i~~~~~~v~~~~~--------------------~~~~~~~~g~~~vP~ 53 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQ-------ENG--ISYEEIPLGKDIT--------------------GRSLRAVTGAMTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHH-------HcC--CCcEEEECCCChh--------------------HHHHHHHhCCCCcCe
Confidence 35588899999987755544 335 4444455554331 122445567888999
Q ss_pred EEE
Q 011791 189 LVI 191 (477)
Q Consensus 189 ~~l 191 (477)
+++
T Consensus 54 ifi 56 (72)
T cd03029 54 VFI 56 (72)
T ss_pred EEE
Confidence 743
|
PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate. |
| >PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger | Back alignment and domain information |
|---|
Probab=88.73 E-value=0.35 Score=33.81 Aligned_cols=36 Identities=19% Similarity=0.383 Sum_probs=29.0
Q ss_pred CCceeccCCCCCC---CeEEEEcCCCCCCcccccccccC
Q 011791 414 CGVYSCDGCDEEG---RVWAFSCDECDFCLHPNCALGED 449 (477)
Q Consensus 414 ~~~~~~~~C~~~g---~~w~~~~~~~~~~~~~~~~~~~~ 449 (477)
..+..|+.|++.- ..-.|.|..|.+-+|.+|.....
T Consensus 9 ~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~~ 47 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKVP 47 (53)
T ss_dssp SSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTSS
T ss_pred CCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhcC
Confidence 5677999999987 66799999999999999996543
|
Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A .... |
| >COG4312 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.72 E-value=2.6 Score=38.50 Aligned_cols=92 Identities=20% Similarity=0.315 Sum_probs=57.0
Q ss_pred CceecCCCCeEecCCC-CCCE--EEEEE-ec----CCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhh
Q 011791 88 DFVISSDGRKISVSDL-EGKT--IGLYF-SM----SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 159 (477)
Q Consensus 88 ~fl~~~~g~~v~ls~l-~gk~--vll~F-~a----~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~ 159 (477)
+++.+...-+.+|++| .||- ++..| ++ ..|+.|...+.++......+...+ +.++.||-. ..+++..+-
T Consensus 54 ~Y~Fe~~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~d--v~lv~VsRA-Pl~~l~~~k 130 (247)
T COG4312 54 DYVFETENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHD--VTLVAVSRA-PLEELVAYK 130 (247)
T ss_pred eeEeecCCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcC--ceEEEEecC-cHHHHHHHH
Confidence 5566554447899886 6664 33333 33 469999999999887777887776 788888765 445566665
Q ss_pred cCCCCccccCCchhHHHHHHHcCc
Q 011791 160 GSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+.|.|- +|......+.+.+.|++
T Consensus 131 ~rmGW~-f~w~Ss~~s~Fn~Df~v 153 (247)
T COG4312 131 RRMGWQ-FPWVSSTDSDFNRDFQV 153 (247)
T ss_pred HhcCCc-ceeEeccCccccccccc
Confidence 666554 33332223334445544
|
|
| >cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs | Back alignment and domain information |
|---|
Probab=88.52 E-value=8.5 Score=33.39 Aligned_cols=15 Identities=13% Similarity=0.038 Sum_probs=12.3
Q ss_pred CChhhHhHhHHHHHH
Q 011791 276 WCPPCRAFLPKLIDA 290 (477)
Q Consensus 276 wC~~C~~~~p~l~~l 290 (477)
+|++|++....|+.+
T Consensus 15 t~~~C~~ak~iL~~~ 29 (147)
T cd03031 15 TFEDCNNVRAILESF 29 (147)
T ss_pred cChhHHHHHHHHHHC
Confidence 899999988777653
|
This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive. |
| >cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=88.50 E-value=0.76 Score=33.56 Aligned_cols=55 Identities=25% Similarity=0.303 Sum_probs=34.6
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
++.|.++||++|+.....|.+. + +.+..+.++.+.+. ...+.+..+...+|+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~-------~--i~~~~~di~~~~~~-------------------~~~l~~~~~~~~~P~ 53 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL-------G--IEFEEIDILEDGEL-------------------REELKELSGWPTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------C--CcEEEEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 3568899999999877665433 3 44555666554431 133455567778898
Q ss_pred EEE
Q 011791 189 LVI 191 (477)
Q Consensus 189 ~~l 191 (477)
+++
T Consensus 54 ~~~ 56 (72)
T cd02066 54 IFI 56 (72)
T ss_pred EEE
Confidence 754
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which |
| >PF13778 DUF4174: Domain of unknown function (DUF4174) | Back alignment and domain information |
|---|
Probab=88.48 E-value=5.1 Score=33.32 Aligned_cols=90 Identities=20% Similarity=0.319 Sum_probs=50.6
Q ss_pred cccCCCCE-EEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHH
Q 011791 260 VSDLAGKT-ILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASL 337 (477)
Q Consensus 260 l~~~~gk~-vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 337 (477)
|+++++|. +||.|. ..--+.=+.+...|.+....+.++ ++.++.+.-+.... ..-+........+
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eR--di~v~~i~~~~~~~-----------~~~~~~~~~~~~l 69 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDER--DIVVIVITGDGARS-----------PGKPLSPEDIQAL 69 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccC--ceEEEEEeCCcccc-----------ccCcCCHHHHHHH
Confidence 45566653 333343 223344555666666666667766 56666663332211 0011112224467
Q ss_pred HHhcCCC-CcceEEEECCCCcEEEec
Q 011791 338 SRKFKVS-GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 338 ~~~~~v~-~~Pt~~lid~~G~iv~~~ 362 (477)
.+.|++. +.-+++||++||.+.-+.
T Consensus 70 r~~l~~~~~~f~~vLiGKDG~vK~r~ 95 (118)
T PF13778_consen 70 RKRLRIPPGGFTVVLIGKDGGVKLRW 95 (118)
T ss_pred HHHhCCCCCceEEEEEeCCCcEEEec
Confidence 8888865 335799999999998774
|
|
| >cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=88.19 E-value=1.1 Score=33.50 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=32.9
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc-cCC
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS-TLP 187 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~-~~P 187 (477)
+..|+.++|+.|......|.+ .| +.+-.+.++.+.+.. ..+.+..+.. .+|
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~i~i~~~~~~~-------------------~~~~~~~~~~~~vP 53 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KG--VDYEEIDVDGDPALR-------------------EEMINRSGGRRTVP 53 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CC--CcEEEEECCCCHHHH-------------------HHHHHHhCCCCccC
Confidence 356888999999876665543 35 444455555543322 2244455655 789
Q ss_pred eEEE
Q 011791 188 TLVI 191 (477)
Q Consensus 188 ~~~l 191 (477)
.+++
T Consensus 54 ~v~i 57 (75)
T cd03418 54 QIFI 57 (75)
T ss_pred EEEE
Confidence 8654
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i |
| >TIGR02181 GRX_bact Glutaredoxin, GrxC family | Back alignment and domain information |
|---|
Probab=87.95 E-value=0.79 Score=34.84 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=33.1
Q ss_pred EEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCeE
Q 011791 110 LYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTL 189 (477)
Q Consensus 110 l~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 189 (477)
..|+.+||+.|......|.+ .|.++++ +.++.+.+.. ..+.+..|...+|++
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~-------~~i~~~~--~di~~~~~~~-------------------~~~~~~~g~~~vP~i 53 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSS-------KGVTFTE--IRVDGDPALR-------------------DEMMQRSGRRTVPQI 53 (79)
T ss_pred EEEecCCChhHHHHHHHHHH-------cCCCcEE--EEecCCHHHH-------------------HHHHHHhCCCCcCEE
Confidence 45889999999977665543 3533444 4455443321 234455677889997
Q ss_pred EE
Q 011791 190 VI 191 (477)
Q Consensus 190 ~l 191 (477)
++
T Consensus 54 ~i 55 (79)
T TIGR02181 54 FI 55 (79)
T ss_pred EE
Confidence 54
|
This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. |
| >cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins | Back alignment and domain information |
|---|
Probab=87.40 E-value=1.7 Score=34.23 Aligned_cols=60 Identities=22% Similarity=0.335 Sum_probs=33.6
Q ss_pred CCCEEEEEEe----cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHH
Q 011791 104 EGKTIGLYFS----MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 179 (477)
Q Consensus 104 ~gk~vll~F~----a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 179 (477)
+.+.|+|+-- .+||++|......|. +.|.+++.+ .++.+.+ ....+.+
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~-------~~~i~y~~i--dv~~~~~-------------------~~~~l~~ 57 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILN-------QLGVDFGTF--DILEDEE-------------------VRQGLKE 57 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHH-------HcCCCeEEE--EcCCCHH-------------------HHHHHHH
Confidence 3455666432 269999986554443 334335544 4443322 1244566
Q ss_pred HcCcccCCeEEE
Q 011791 180 YFELSTLPTLVI 191 (477)
Q Consensus 180 ~~~v~~~P~~~l 191 (477)
..|...+|.+++
T Consensus 58 ~~g~~tvP~vfi 69 (90)
T cd03028 58 YSNWPTFPQLYV 69 (90)
T ss_pred HhCCCCCCEEEE
Confidence 667888999754
|
The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein |
| >cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions | Back alignment and domain information |
|---|
Probab=87.24 E-value=1.4 Score=32.94 Aligned_cols=54 Identities=20% Similarity=0.177 Sum_probs=33.1
Q ss_pred EEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCeE
Q 011791 110 LYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTL 189 (477)
Q Consensus 110 l~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 189 (477)
+.|..+||+.|+.....|. +.| +.+..+.++.+.+.. ..+.+..+...+|.+
T Consensus 4 ~ly~~~~C~~C~ka~~~L~-------~~g--i~~~~~di~~~~~~~-------------------~el~~~~g~~~vP~v 55 (73)
T cd03027 4 TIYSRLGCEDCTAVRLFLR-------EKG--LPYVEINIDIFPERK-------------------AELEERTGSSVVPQI 55 (73)
T ss_pred EEEecCCChhHHHHHHHHH-------HCC--CceEEEECCCCHHHH-------------------HHHHHHhCCCCcCEE
Confidence 4577899999987665554 345 444555665544322 334555566778887
Q ss_pred EE
Q 011791 190 VI 191 (477)
Q Consensus 190 ~l 191 (477)
++
T Consensus 56 ~i 57 (73)
T cd03027 56 FF 57 (73)
T ss_pred EE
Confidence 55
|
GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions. |
| >cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=87.08 E-value=0.9 Score=40.38 Aligned_cols=40 Identities=20% Similarity=0.181 Sum_probs=32.9
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEE
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLI 146 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~i 146 (477)
.+++.++.|+...||+|..+.+.+.++.+++.++ +.+..+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~---v~~~~~ 53 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKD---VKFEKV 53 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCC---ceEEEc
Confidence 5789999999999999999999999999888443 554443
|
It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain. |
| >PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol | Back alignment and domain information |
|---|
Probab=86.95 E-value=3.4 Score=33.52 Aligned_cols=75 Identities=13% Similarity=0.238 Sum_probs=49.2
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
.++++|+=.++.|+-.......+.+.++...+. +.+.++.+=..++ ....+++.|||.
T Consensus 19 ~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~---~~~y~l~v~~~R~-------------------vSn~IAe~~~V~ 76 (105)
T PF11009_consen 19 EKPVLIFKHSTRCPISAMALREFEKFWEESPDE---IPVYYLDVIEYRP-------------------VSNAIAEDFGVK 76 (105)
T ss_dssp -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGGGHH-------------------HHHHHHHHHT--
T ss_pred cCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc---ceEEEEEEEeCch-------------------hHHHHHHHhCCC
Confidence 478888888999999988888888877776553 6677776543332 236789999996
Q ss_pred c-CCeEEEECCCCCccccc
Q 011791 185 T-LPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 185 ~-~P~~~lid~~G~i~~~~ 202 (477)
. -|.++|+. +|+++...
T Consensus 77 HeSPQ~ili~-~g~~v~~a 94 (105)
T PF11009_consen 77 HESPQVILIK-NGKVVWHA 94 (105)
T ss_dssp --SSEEEEEE-TTEEEEEE
T ss_pred cCCCcEEEEE-CCEEEEEC
Confidence 5 79999996 78877654
|
The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A. |
| >PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=86.78 E-value=1.1 Score=46.02 Aligned_cols=63 Identities=19% Similarity=0.283 Sum_probs=37.1
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
++.|..+|||+|++....|.+. ++..-.+++|.+.. ..++.++.. ...+.+..|.+++|+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~---------gi~~~~idi~~~~~-~~~~~~~~~----------~~~~~~~~g~~tvP~ 63 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN---------DIPFTQISLDDDVK-RAEFYAEVN----------KNILLVEEHIRTVPQ 63 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC---------CCCeEEEECCCChh-HHHHHHHHh----------hccccccCCCCccCe
Confidence 5678899999999988777653 34445566664432 222222111 001333467888998
Q ss_pred EEE
Q 011791 349 LVA 351 (477)
Q Consensus 349 ~~l 351 (477)
+++
T Consensus 64 ifi 66 (410)
T PRK12759 64 IFV 66 (410)
T ss_pred EEE
Confidence 855
|
|
| >PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin | Back alignment and domain information |
|---|
Probab=86.29 E-value=1.2 Score=42.70 Aligned_cols=71 Identities=15% Similarity=0.169 Sum_probs=49.4
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++-+|+|+||-+.++.|..+...|..|+.+|.. +.++-|..... . +...|..
T Consensus 145 ~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a~~~-----------------------~-~~~~f~~ 196 (265)
T PF02114_consen 145 KSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRASKC-----------------------P-ASENFPD 196 (265)
T ss_dssp TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEECGC-----------------------C-TTTTS-T
T ss_pred CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEehhcc-----------------------C-cccCCcc
Confidence 346899999999999999999999999999987 34555543311 0 2356778
Q ss_pred ccCCeEEEECCCCCccccch
Q 011791 184 STLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~~ 203 (477)
..+|++++.- +|.++...+
T Consensus 197 ~~LPtllvYk-~G~l~~~~V 215 (265)
T PF02114_consen 197 KNLPTLLVYK-NGDLIGNFV 215 (265)
T ss_dssp TC-SEEEEEE-TTEEEEEEC
T ss_pred cCCCEEEEEE-CCEEEEeEE
Confidence 9999998886 787776543
|
Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B. |
| >PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex | Back alignment and domain information |
|---|
Probab=86.29 E-value=3.5 Score=39.25 Aligned_cols=117 Identities=15% Similarity=0.205 Sum_probs=65.1
Q ss_pred CcCCCcee-cCCCCeEecCC-CCCCEEEEEE-ecCCCccchh-hHHHHHHHHHHHh-cCCCcEEEEEEEcCCCHH-H-HH
Q 011791 84 SHSRDFVI-SSDGRKISVSD-LEGKTIGLYF-SMSSYKASAE-FTPRLVEVYEKLK-GKGESFEIVLISLDDEEE-S-FK 156 (477)
Q Consensus 84 ~~~p~fl~-~~~g~~v~ls~-l~gk~vll~F-~a~wC~~C~~-~~p~l~~l~~~~~-~~g~~~~vv~is~D~~~~-~-~~ 156 (477)
.-+|++.. +.+|+.+++.+ ++||+.+|.. +..|-..|.. ... ...+.|. ..+..+++|-|++-++.- . +.
T Consensus 99 lyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~---p~~~~~~~~~~~~~q~v~In~~e~~~k~~l~ 175 (252)
T PF05176_consen 99 LYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTS---PFLEDFLQEPYGRVQIVEINLIENWLKSWLV 175 (252)
T ss_pred CcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhh---HHHHHHhhCCCCceEEEEEecchHHHHHHHH
Confidence 34666643 67888888765 6899755543 3344333322 221 2222332 332359999999875532 1 12
Q ss_pred Hhhc-----CCC---Cccc--cCCchhHHHHHHHcCccc--CCeEEEECCCCCccccch
Q 011791 157 RDLG-----SMP---WLAL--PFKDKSREKLARYFELST--LPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 157 ~~~~-----~~~---~~~~--~~~~~~~~~l~~~~~v~~--~P~~~lid~~G~i~~~~~ 203 (477)
..+. .+| |-.+ .........+.+.+++.. +..++|+|.+|+|.....
T Consensus 176 ~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWags 234 (252)
T PF05176_consen 176 KLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWAGS 234 (252)
T ss_pred HHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeCcc
Confidence 2221 122 2222 111112345777888743 678999999999998764
|
A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane |
| >PRK10954 periplasmic protein disulfide isomerase I; Provisional | Back alignment and domain information |
|---|
Probab=86.01 E-value=0.77 Score=42.39 Aligned_cols=33 Identities=33% Similarity=0.595 Sum_probs=27.3
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHH---HHHHHHHHh
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKE 296 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~ 296 (477)
.|++.++.|+...||+|..+.+.+ ..+.+.+.+
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~ 71 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE 71 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC
Confidence 478889999999999999999866 666666654
|
|
| >COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.24 E-value=3.7 Score=31.53 Aligned_cols=57 Identities=19% Similarity=0.199 Sum_probs=33.4
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
++.|.-++||+|......|. .+|..++.+-+..+.. +... ..+.+..|.+.+|.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~~~-~~~~------------------~~~~~~~g~~tvP~ 56 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDDDEP-EEAR------------------EMVKRGKGQRTVPQ 56 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcCCCcEEEEecCCcH-HHHH------------------HHHHHhCCCCCcCE
Confidence 35577889999986655443 5564455555544432 1111 12233337888999
Q ss_pred EEE
Q 011791 189 LVI 191 (477)
Q Consensus 189 ~~l 191 (477)
+++
T Consensus 57 I~i 59 (80)
T COG0695 57 IFI 59 (80)
T ss_pred EEE
Confidence 766
|
|
| >COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.98 E-value=2.1 Score=36.79 Aligned_cols=117 Identities=17% Similarity=0.319 Sum_probs=68.1
Q ss_pred hccCcCCCcee-------cCCC-CeEecCC-CCCCEEEEEEecC--CCccchh-hHHHHHHHHHHHhcCCCcEEEEEEEc
Q 011791 81 VLTSHSRDFVI-------SSDG-RKISVSD-LEGKTIGLYFSMS--SYKASAE-FTPRLVEVYEKLKGKGESFEIVLISL 148 (477)
Q Consensus 81 ~~g~~~p~fl~-------~~~g-~~v~ls~-l~gk~vll~F~a~--wC~~C~~-~~p~l~~l~~~~~~~g~~~~vv~is~ 148 (477)
.+|+.+|+-.+ +..| ..++..+ ++||.|+| |..+ ..|.|-. .+|-..+++++++.+|. =+|+.||+
T Consensus 4 ~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvl-f~lPGAFTPTCS~~hlPgY~~~~d~f~~kGV-D~I~cVSV 81 (165)
T COG0678 4 MVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVL-FSLPGAFTPTCSSSHLPGYLELADEFKAKGV-DEIYCVSV 81 (165)
T ss_pred ccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEE-EeCCCccCCCcccccCccHHHHHHHHHHcCC-ceEEEEEe
Confidence 45677776533 1122 2334444 47887766 5544 4577876 78999999999999883 25677888
Q ss_pred CCC--HHHHHHhhcCC-CCccccCCchhHHHHHHHcCc-----------ccCCeEEEECCCCCccccch
Q 011791 149 DDE--EESFKRDLGSM-PWLALPFKDKSREKLARYFEL-----------STLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 149 D~~--~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~v-----------~~~P~~~lid~~G~i~~~~~ 203 (477)
++. ..+|.+..... .-..+++. +.+..+.+|+ ++.-...++. ||.+..-++
T Consensus 82 ND~FVm~AWak~~g~~~~I~fi~Dg---~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV~-nGvV~~~~i 146 (165)
T COG0678 82 NDAFVMNAWAKSQGGEGNIKFIPDG---NGEFTKAMGMLVDKSDLGFGVRSWRYSMVVE-NGVVEKLFI 146 (165)
T ss_pred CcHHHHHHHHHhcCCCccEEEecCC---CchhhhhcCceeecccCCcceeeeeEEEEEe-CCeEEEEEe
Confidence 753 35677766654 33333433 3445555543 3333444443 666655543
|
|
| >cd00029 C1 Protein kinase C conserved region 1 (C1) | Back alignment and domain information |
|---|
Probab=84.84 E-value=0.7 Score=31.62 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=29.4
Q ss_pred CceeccCCCCCCCe---EEEEcCCCCCCcccccccccC
Q 011791 415 GVYSCDGCDEEGRV---WAFSCDECDFCLHPNCALGED 449 (477)
Q Consensus 415 ~~~~~~~C~~~g~~---w~~~~~~~~~~~~~~~~~~~~ 449 (477)
.+..|..|.+.-.+ ..|.|..|.+-+|++|.....
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~v~ 47 (50)
T cd00029 10 KPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKVP 47 (50)
T ss_pred CCCChhhcchhhhccccceeEcCCCCCchhhhhhccCC
Confidence 46689999887664 899999999999999997653
|
Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis). |
| >TIGR00365 monothiol glutaredoxin, Grx4 family | Back alignment and domain information |
|---|
Probab=84.60 E-value=2.7 Score=33.64 Aligned_cols=58 Identities=22% Similarity=0.379 Sum_probs=33.1
Q ss_pred CEEEEEEe----cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 011791 106 KTIGLYFS----MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 181 (477)
Q Consensus 106 k~vll~F~----a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (477)
+.|+|+-. ++|||+|......|. +.|.+++ .+.++.+.+ ....+.+..
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~-------~~~i~~~--~~di~~~~~-------------------~~~~l~~~t 63 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILK-------ACGVPFA--YVNVLEDPE-------------------IRQGIKEYS 63 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHH-------HcCCCEE--EEECCCCHH-------------------HHHHHHHHh
Confidence 44555543 389999986555443 3353344 445444432 123455566
Q ss_pred CcccCCeEEE
Q 011791 182 ELSTLPTLVI 191 (477)
Q Consensus 182 ~v~~~P~~~l 191 (477)
|...+|.+++
T Consensus 64 g~~tvP~vfi 73 (97)
T TIGR00365 64 NWPTIPQLYV 73 (97)
T ss_pred CCCCCCEEEE
Confidence 7788999765
|
The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation. |
| >KOG3414 consensus Component of the U4/U6 | Back alignment and domain information |
|---|
Probab=84.22 E-value=5.9 Score=32.96 Aligned_cols=62 Identities=16% Similarity=0.278 Sum_probs=48.5
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
.|.|+|-|.-.|-|-|..+-..|.++.+.+.+- .+|..+.+|+- ..+.+.|++.
T Consensus 23 ~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---a~IylvdideV-----------------------~~~~~~~~l~ 76 (142)
T KOG3414|consen 23 ERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---AVIYLVDIDEV-----------------------PDFVKMYELY 76 (142)
T ss_pred ceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc---eEEEEEecchh-----------------------hhhhhhhccc
Confidence 488999999999999999999999999998774 45555666633 2356788888
Q ss_pred cCCeEEEE
Q 011791 185 TLPTLVII 192 (477)
Q Consensus 185 ~~P~~~li 192 (477)
..|+++++
T Consensus 77 ~p~tvmfF 84 (142)
T KOG3414|consen 77 DPPTVMFF 84 (142)
T ss_pred CCceEEEE
Confidence 88887755
|
U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] |
| >PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A | Back alignment and domain information |
|---|
Probab=84.02 E-value=0.29 Score=31.39 Aligned_cols=18 Identities=28% Similarity=0.731 Sum_probs=12.1
Q ss_pred EEEcCCCCCCcccccccc
Q 011791 430 AFSCDECDFCLHPNCALG 447 (477)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~ 447 (477)
..+|..|++.+|..|-=.
T Consensus 4 ll~C~~C~v~VH~~CYGv 21 (36)
T PF13831_consen 4 LLFCDNCNVAVHQSCYGV 21 (36)
T ss_dssp EEE-SSS--EEEHHHHT-
T ss_pred eEEeCCCCCcCChhhCCc
Confidence 468999999999999844
|
|
| >cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI | Back alignment and domain information |
|---|
Probab=83.74 E-value=10 Score=31.08 Aligned_cols=53 Identities=13% Similarity=0.241 Sum_probs=36.2
Q ss_pred hhhHhHhHHHHHHHHHHH-hcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCC----cceEEEE
Q 011791 278 PPCRAFLPKLIDAYKKIK-ERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSG----IPMLVAI 352 (477)
Q Consensus 278 ~~C~~~~p~l~~l~~~~~-~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~----~Pt~~li 352 (477)
..-......+.+++++++ ++ + .++.+|.+.. ....+.||+.. .|.+.++
T Consensus 31 ~~~~~~~~~~~~vAk~fk~gk---i--~Fv~~D~~~~---------------------~~~l~~fgl~~~~~~~P~~~i~ 84 (111)
T cd03073 31 KGTNYWRNRVLKVAKDFPDRK---L--NFAVADKEDF---------------------SHELEEFGLDFSGGEKPVVAIR 84 (111)
T ss_pred hHHHHHHHHHHHHHHHCcCCe---E--EEEEEcHHHH---------------------HHHHHHcCCCcccCCCCEEEEE
Confidence 344557788888889988 55 4 4444554331 23677889974 9999999
Q ss_pred CCCC
Q 011791 353 GPSG 356 (477)
Q Consensus 353 d~~G 356 (477)
+.++
T Consensus 85 ~~~~ 88 (111)
T cd03073 85 TAKG 88 (111)
T ss_pred eCCC
Confidence 8665
|
They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei |
| >cd02249 ZZ Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=82.56 E-value=0.83 Score=30.99 Aligned_cols=32 Identities=34% Similarity=0.695 Sum_probs=28.3
Q ss_pred eeccCCCCCCCeEEEEcCCCC-CCccccccccc
Q 011791 417 YSCDGCDEEGRVWAFSCDECD-FCLHPNCALGE 448 (477)
Q Consensus 417 ~~~~~C~~~g~~w~~~~~~~~-~~~~~~~~~~~ 448 (477)
+.|+.|...-.+-.|.|.+|. |||...|....
T Consensus 1 ~~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~ 33 (46)
T cd02249 1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKG 33 (46)
T ss_pred CCCcCCCCCCcCCEEECCCCCCCcCHHHHHCcC
Confidence 469999998888899999998 99999999754
|
Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins. |
| >cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs | Back alignment and domain information |
|---|
Probab=80.90 E-value=9.5 Score=28.05 Aligned_cols=60 Identities=20% Similarity=0.250 Sum_probs=35.7
Q ss_pred EEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcceEE
Q 011791 271 YFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLV 350 (477)
Q Consensus 271 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~ 350 (477)
.|+.+||++|++..-.|.+. +-.++++.++..... ..+.+......+|++.
T Consensus 3 ly~~~~~p~~~rv~~~L~~~-------gl~~e~~~v~~~~~~----------------------~~~~~~np~~~vP~L~ 53 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLA-------GITVELREVELKNKP----------------------AEMLAASPKGTVPVLV 53 (71)
T ss_pred EEecCCCcHHHHHHHHHHHc-------CCCcEEEEeCCCCCC----------------------HHHHHHCCCCCCCEEE
Confidence 46788999999987655442 224566665543221 1344444567888884
Q ss_pred EECCCCcEEEe
Q 011791 351 AIGPSGRTITK 361 (477)
Q Consensus 351 lid~~G~iv~~ 361 (477)
. .+|..+..
T Consensus 54 ~--~~g~~l~e 62 (71)
T cd03060 54 L--GNGTVIEE 62 (71)
T ss_pred E--CCCcEEec
Confidence 2 35766543
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r |
| >KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.84 E-value=8 Score=31.38 Aligned_cols=62 Identities=24% Similarity=0.358 Sum_probs=35.9
Q ss_pred EEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCeE
Q 011791 110 LYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTL 189 (477)
Q Consensus 110 l~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 189 (477)
|.|..+||+.|... +++...+ +.+..|+-+.-+.+-.+++ ..+.+.-|-+.+|.+
T Consensus 17 VifSKs~C~~c~~~----k~ll~~~---~v~~~vvELD~~~~g~eiq------------------~~l~~~tg~~tvP~v 71 (104)
T KOG1752|consen 17 VIFSKSSCPYCHRA----KELLSDL---GVNPKVVELDEDEDGSEIQ------------------KALKKLTGQRTVPNV 71 (104)
T ss_pred EEEECCcCchHHHH----HHHHHhC---CCCCEEEEccCCCCcHHHH------------------HHHHHhcCCCCCCEE
Confidence 45899999999872 3444443 3224554443333322233 334455556789997
Q ss_pred EEECCCCCcc
Q 011791 190 VIIGPDGKTL 199 (477)
Q Consensus 190 ~lid~~G~i~ 199 (477)
+| +|+.+
T Consensus 72 FI---~Gk~i 78 (104)
T KOG1752|consen 72 FI---GGKFI 78 (104)
T ss_pred EE---CCEEE
Confidence 77 56666
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=80.49 E-value=4.8 Score=42.75 Aligned_cols=62 Identities=13% Similarity=0.080 Sum_probs=42.8
Q ss_pred CCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 011791 103 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 182 (477)
Q Consensus 103 l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (477)
+.++.-+..|..++||+|......++++..... ++..-.| |... ...+++.|+
T Consensus 114 ~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~----~i~~~~i--d~~~---------------------~~~~~~~~~ 166 (517)
T PRK15317 114 LDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP----NITHTMI--DGAL---------------------FQDEVEARN 166 (517)
T ss_pred cCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC----CceEEEE--Echh---------------------CHhHHHhcC
Confidence 344566788999999999988877777766432 2444344 3221 144788999
Q ss_pred cccCCeEEE
Q 011791 183 LSTLPTLVI 191 (477)
Q Consensus 183 v~~~P~~~l 191 (477)
+.++|++++
T Consensus 167 v~~VP~~~i 175 (517)
T PRK15317 167 IMAVPTVFL 175 (517)
T ss_pred CcccCEEEE
Confidence 999999876
|
|
| >cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=80.04 E-value=15 Score=30.10 Aligned_cols=51 Identities=6% Similarity=-0.003 Sum_probs=35.5
Q ss_pred hHhHhHHHHHHHHH---HHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCC--cceEEEECC
Q 011791 280 CRAFLPKLIDAYKK---IKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSG--IPMLVAIGP 354 (477)
Q Consensus 280 C~~~~p~l~~l~~~---~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~--~Pt~~lid~ 354 (477)
-......+.+++++ ++++ +.++.++.+... ...+.||++. .|.+.+++-
T Consensus 29 ~~~~~~~~~~vAk~~~~~kgk---i~Fv~~d~~~~~-----------------------~~~~~fgl~~~~~P~i~i~~~ 82 (111)
T cd03072 29 LESLKEFKQAVARQLISEKGA---INFLTADGDKFR-----------------------HPLLHLGKTPADLPVIAIDSF 82 (111)
T ss_pred HHHHHHHHHHHHHHHHhcCce---EEEEEEechHhh-----------------------hHHHHcCCCHhHCCEEEEEcc
Confidence 35567788888888 7765 555544444221 3688899986 899999987
Q ss_pred CC
Q 011791 355 SG 356 (477)
Q Consensus 355 ~G 356 (477)
++
T Consensus 83 ~~ 84 (111)
T cd03072 83 RH 84 (111)
T ss_pred hh
Confidence 55
|
It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 477 | ||||
| 1fg4_A | 149 | Structure Of Tryparedoxin Ii Length = 149 | 8e-23 | ||
| 1o6j_A | 150 | Tryparedoxin Ii From C.Fasciculata Solved By Sulphu | 8e-23 | ||
| 1o81_A | 152 | Tryparedoxin Ii From C.fasciculata Solved By Sulphu | 9e-23 | ||
| 1oc9_A | 152 | Tryparedoxin Ii From C.Fasciculata Solved By Mr Len | 1e-22 | ||
| 1v5n_A | 89 | Solution Structure Of Dc1 Domain Of Pdi-Like Hypoth | 3e-22 | ||
| 1ezk_A | 153 | Crystal Structure Of Recombinant Tryparedoxin I Len | 9e-22 | ||
| 1okd_A | 154 | Nmr-Structure Of Tryparedoxin 1 Length = 154 | 1e-21 | ||
| 1ewx_A | 146 | Crystal Structure Of Native Tryparedoxin I From Cri | 1e-21 | ||
| 1qk8_A | 146 | Tryparedoxin-I From Crithidia Fasciculata Length = | 1e-21 | ||
| 1i5g_A | 144 | Tryparedoxin Ii Complexed With Glutathionylspermidi | 1e-21 | ||
| 1o8x_A | 146 | Mutant Tryparedoxin-I Cys43ala Length = 146 | 1e-20 | ||
| 1o73_A | 144 | Tryparedoxin From Trypanosoma Brucei Length = 144 | 3e-20 | ||
| 3s9f_A | 165 | The Structure Of Tryparedoxin I From Leishmania Maj | 7e-20 | ||
| 2lus_A | 143 | Nmr Structure Of Carcinoscorpius Rotundicauda Thior | 1e-17 | ||
| 2h1b_A | 143 | Resa E80q Length = 143 | 7e-07 | ||
| 1st9_A | 143 | Crystal Structure Of A Soluble Domain Of Resa In Th | 8e-07 | ||
| 3c71_A | 143 | Struture Of A Resa Variant With A Dsba-Like Active | 9e-07 | ||
| 2lrt_A | 152 | Solution Structure Of The Uncharacterized Thioredox | 8e-06 | ||
| 3c73_A | 140 | Structure Of Cehc Variant Resa Length = 140 | 1e-05 | ||
| 2h19_A | 143 | Crystal Structure Of Resa Cys77ala Variant Length = | 1e-05 | ||
| 2h1a_A | 143 | Resa C74a Variant Length = 143 | 1e-05 | ||
| 2f9s_A | 151 | 2nd Crystal Structure Of A Soluble Domain Of Resa I | 3e-05 | ||
| 2lja_A | 152 | Solution Structure Of A Putative Thiol-Disulfide Ox | 6e-05 | ||
| 1jfu_A | 186 | Crystal Structure Of The Soluble Domain Of Tlpa Fro | 1e-04 | ||
| 2h1g_A | 143 | Resa C74aC77A Length = 143 | 1e-04 | ||
| 3kcm_A | 154 | The Crystal Structure Of Thioredoxin Protein From G | 4e-04 | ||
| 4evm_A | 138 | 1.5 Angstrom Crystal Structure Of Soluble Domain Of | 6e-04 | ||
| 3erw_A | 145 | Crystal Structure Of Stoa From Bacillus Subtilis Le | 6e-04 |
| >pdb|1FG4|A Chain A, Structure Of Tryparedoxin Ii Length = 149 | Back alignment and structure |
|
| >pdb|1O6J|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur Phasing Length = 150 | Back alignment and structure |
|
| >pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur Phasing Length = 152 | Back alignment and structure |
|
| >pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr Length = 152 | Back alignment and structure |
|
| >pdb|1V5N|A Chain A, Solution Structure Of Dc1 Domain Of Pdi-Like Hypothetical Protein From Arabidopsis Thaliana Length = 89 | Back alignment and structure |
|
| >pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I Length = 153 | Back alignment and structure |
|
| >pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxin I From Crithidia Fasciculata Length = 146 | Back alignment and structure |
|
| >pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata Length = 146 | Back alignment and structure |
|
| >pdb|1I5G|A Chain A, Tryparedoxin Ii Complexed With Glutathionylspermidine Length = 144 | Back alignment and structure |
|
| >pdb|1O8X|A Chain A, Mutant Tryparedoxin-I Cys43ala Length = 146 | Back alignment and structure |
|
| >pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei Length = 144 | Back alignment and structure |
|
| >pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major Length = 165 | Back alignment and structure |
|
| >pdb|2LUS|A Chain A, Nmr Structure Of Carcinoscorpius Rotundicauda Thioredoxin Related Protein 16 And Its Role In Regulating Transcription Factor Nf-Kb Activity Length = 143 | Back alignment and structure |
|
| >pdb|2H1B|A Chain A, Resa E80q Length = 143 | Back alignment and structure |
|
| >pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The Oxidised Form Length = 143 | Back alignment and structure |
|
| >pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site Motif (Cphc) Length = 143 | Back alignment and structure |
|
| >pdb|2LRT|A Chain A, Solution Structure Of The Uncharacterized Thioredoxin-Like Protein Bvu_1432 From Bacteroides Vulgatus Length = 152 | Back alignment and structure |
|
| >pdb|3C73|A Chain A, Structure Of Cehc Variant Resa Length = 140 | Back alignment and structure |
|
| >pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant Length = 143 | Back alignment and structure |
|
| >pdb|2H1A|A Chain A, Resa C74a Variant Length = 143 | Back alignment and structure |
|
| >pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The Oxidised Form Length = 151 | Back alignment and structure |
|
| >pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide Oxidoreductase From Bacteroides Vulgatus Length = 152 | Back alignment and structure |
|
| >pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From Bradyrhizobium Japonicum Length = 186 | Back alignment and structure |
|
| >pdb|2H1G|A Chain A, Resa C74aC77A Length = 143 | Back alignment and structure |
|
| >pdb|3KCM|A Chain A, The Crystal Structure Of Thioredoxin Protein From Geobacter Metallireducens Length = 154 | Back alignment and structure |
|
| >pdb|4EVM|A Chain A, 1.5 Angstrom Crystal Structure Of Soluble Domain Of Membrane-Anchored Thioredoxin Family Protein From Streptococcus Pneumoniae Strain Canada Mdr_19a Length = 138 | Back alignment and structure |
|
| >pdb|3ERW|A Chain A, Crystal Structure Of Stoa From Bacillus Subtilis Length = 145 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 4e-45
Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 4/130 (3%)
Query: 250 VVGKNGGKVPVSDLA--GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS 307
+V KN +V ++ I YFSAHWCPPCR F P L D Y ++ + + E++F+S
Sbjct: 9 LVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVS 68
Query: 308 SDRDQTSFDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARD 365
SDR + ++ WLA+P+ ++++ K+ ++GIP LV + G I+ R
Sbjct: 69 SDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGRG 128
Query: 366 MIAVHGAEAY 375
+ G A+
Sbjct: 129 EVQSLGPRAF 138
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 7e-31
Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 4/130 (3%)
Query: 90 VISSDGRKISVSDL--EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLIS 147
++ + +++ ++ + IG YFS FTP L ++Y +L FEI+ +S
Sbjct: 9 LVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVS 68
Query: 148 LDDEEESFKRDLG--SMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAE 205
D E+ + + WLA+P++ + + ++ +P LVI+ DG + N
Sbjct: 69 SDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGRG 128
Query: 206 AIEEHGVGAF 215
++ G AF
Sbjct: 129 EVQSLGPRAF 138
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 2e-10
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGY 55
WLA+P+ + + + GIP LVI+ ++G ++S G ++ G +
Sbjct: 85 GDWLAIPYRS-GPASNVTAKYGITGIPALVIVKKDGTLISMNGRGEVQSLGPRAF 138
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 4e-44
Identities = 45/150 (30%), Positives = 80/150 (53%), Gaps = 4/150 (2%)
Query: 234 ESQTLESVLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKK 293
+ V + K + L+GKT+ YFSA WCPPCR F P+L++ Y+K
Sbjct: 17 RGSHMSGVAKHLGEALKLRKQADTADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEK 76
Query: 294 IKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGD-ARKASLSRKFKVSGIPMLVAI 352
+ +++ E++ S D ++ F+ ++ MPWL++PF + +L++K+ V IP L+ +
Sbjct: 77 HHD-SKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGL 135
Query: 353 GP-SGRTITKEARDMIAVHG-AEAYPFTEE 380
+G T+T AR + E +P+ +E
Sbjct: 136 NADTGDTVTTRARHALTQDPMGEQFPWRDE 165
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 6e-31
Identities = 46/144 (31%), Positives = 71/144 (49%), Gaps = 4/144 (2%)
Query: 80 SVLTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGE 139
V + + L GKT+ YFS S FTP+LVE YEK
Sbjct: 23 GVAKHLGEALKLRKQADTADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKN 82
Query: 140 SFEIVLISLDDEEESFKRDLGSMPWLALPFKDKS-REKLARYFELSTLPTLVIIGPD-GK 197
FEI+L S D+EE+ F MPWL++PF +++ E L + + + ++PTL+ + D G
Sbjct: 83 -FEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGD 141
Query: 198 TLHSNVAEAIEEHGVG-AFPFTPE 220
T+ + A+ + +G FP+ E
Sbjct: 142 TVTTRARHALTQDPMGEQFPWRDE 165
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 6e-12
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLSDGGV-EIIREYGVEGYPFT 58
MPWL++PF++ + L + + V IP L+ L+ + G ++ + ++ E +P+
Sbjct: 104 MPWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHALTQDPMGEQFPWR 163
Query: 59 VE 60
E
Sbjct: 164 DE 165
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 2e-43
Identities = 55/135 (40%), Positives = 73/135 (54%), Gaps = 4/135 (2%)
Query: 248 DFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS 307
V+ + + LAGKT+ YFSA WCPP RAF P+LID YK E ++ EV+ IS
Sbjct: 11 TNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAE-KKNFEVMLIS 69
Query: 308 SDRDQTSFDEFFKGMPWLALPFGDA-RKASLSRKFKVSGIPMLVAIGP-SGRTITKEARD 365
D F +++ MPWLALPF D L+ F V IP LV + SG IT +AR
Sbjct: 70 WDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQART 129
Query: 366 MIAVH-GAEAYPFTE 379
M+ A+ +P+
Sbjct: 130 MVVKDPEAKDFPWPN 144
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 7e-30
Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 4/135 (2%)
Query: 87 RDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLI 146
V+ I++ L GKT+ YFS S S FTP+L++ Y+ + ++FE++LI
Sbjct: 10 STNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHA-EKKNFEVMLI 68
Query: 147 SLDDEEESFKRDLGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIGPD-GKTLHSNVA 204
S D+ E FK MPWLALPF+D K E L F++ ++PTLV + D G + +
Sbjct: 69 SWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQAR 128
Query: 205 EAIEEHGVG-AFPFT 218
+ + FP+
Sbjct: 129 TMVVKDPEAKDFPWP 143
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 6e-13
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLS-DGGVEIIREYGVEGYPFT 58
MPWLA+PF D + + L F V IP LV ++ ++G +++ ++++ + +P+
Sbjct: 84 MPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPWP 143
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 1e-42
Identities = 50/136 (36%), Positives = 73/136 (53%), Gaps = 5/136 (3%)
Query: 248 DF-VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI 306
+ G+V + L GKT+ LYFSA WCPPCR F P L + Y+K ++ EVV I
Sbjct: 10 GATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHH-VAKNFEVVLI 68
Query: 307 SSDRDQTSFDEFFKGMPWLALPFG-DARKASLSRKFKVSGIPMLVAIGP-SGRTITKEAR 364
S D +++ F +++ MPWLALPF + + L + F V IP L+ I +G I +AR
Sbjct: 69 SWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQAR 128
Query: 365 -DMIAVHGAEAYPFTE 379
+I +P+
Sbjct: 129 TRVIEDPDGANFPWPN 144
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 7e-29
Identities = 50/135 (37%), Positives = 70/135 (51%), Gaps = 5/135 (3%)
Query: 88 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLI 146
+ S ++S+ L GKT+ LYFS S FTP L E YEK ++FE+VLI
Sbjct: 10 GATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHH-VAKNFEVVLI 68
Query: 147 SLDDEEESFKRDLGSMPWLALPFKDKSRE-KLARYFELSTLPTLVIIGPD-GKTLHSNV- 203
S D+ E F G MPWLALPF +S +L + F + ++PTL+ I D G + +
Sbjct: 69 SWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQAR 128
Query: 204 AEAIEEHGVGAFPFT 218
IE+ FP+
Sbjct: 129 TRVIEDPDGANFPWP 143
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 1e-12
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLS-DGGVEIIREYGVEGYPFT 58
MPWLA+PF T +L + F V IP L+ ++ + G ++ +I + +P+
Sbjct: 84 MPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIEDPDGANFPWP 143
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 6e-42
Identities = 51/130 (39%), Positives = 74/130 (56%), Gaps = 4/130 (3%)
Query: 253 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 312
+ G+V V LAGK + YFSA WCPP R F P+LI+ Y K E +++ EVVF + D ++
Sbjct: 16 RGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHE-SKNFEVVFCTWDEEE 74
Query: 313 TSFDEFFKGMPWLALPFGDA-RKASLSRKFKVSGIPMLVAIGP-SGRTITKEAR-DMIAV 369
F +F MPWLA+PF + LS+ F V IP L+ + SG +T AR ++
Sbjct: 75 DGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLVKD 134
Query: 370 HGAEAYPFTE 379
E +P+ +
Sbjct: 135 PEGEQFPWKD 144
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 1e-29
Identities = 40/136 (29%), Positives = 74/136 (54%), Gaps = 5/136 (3%)
Query: 88 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLI 146
+ ++ V L GK + YFS S + FTP+L+E Y+K + ++FE+V
Sbjct: 10 GIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFH-ESKNFEVVFC 68
Query: 147 SLDDEEESFKRDLGSMPWLALPF-KDKSREKLARYFELSTLPTLVIIGPD-GKTLHSNV- 203
+ D+EE+ F MPWLA+PF + ++ +KL+++F + ++PTL+ + D G + +
Sbjct: 69 TWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRAR 128
Query: 204 AEAIEEHGVGAFPFTP 219
A +++ FP+
Sbjct: 129 ATLVKDPEGEQFPWKD 144
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 2e-13
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLS-DGGVEIIREYGVEGYPFT 58
MPWLAVPF+ SE KL + F V IP L+ +D ++G V++ ++++ E +P+
Sbjct: 84 MPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLVKDPEGEQFPWK 143
|
| >1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3 Length = 89 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 1e-29
Identities = 48/88 (54%), Positives = 60/88 (68%), Gaps = 1/88 (1%)
Query: 371 GAEAYPFTEERMKEIDGQYNEMAKGWPENVKHALH-EHELVLDRCGVYSCDGCDEEGRVW 429
G+ TEER+KEI+ +Y+E+AK WP+ VKH LH EHEL L R VY+CD C+EEG +W
Sbjct: 1 GSSGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIW 60
Query: 430 AFSCDECDFCLHPNCALGEDKGTKDDKS 457
++ CDECDF LH CAL ED S
Sbjct: 61 SYHCDECDFDLHAKCALNEDTKESGPSS 88
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 6e-22
Identities = 21/111 (18%), Positives = 44/111 (39%), Gaps = 2/111 (1%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 313
G ++DL GK +L+ F+ + A L + Y K + E+ IS D D+
Sbjct: 24 KGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQG--FEIYQISLDGDEH 81
Query: 314 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 364
+ +PW+ + + +S + V+ +P + + + +
Sbjct: 82 FWKTSADNLPWVCVRDANGAYSSYISLYNVTNLPSVFLVNRNNELSARGEN 132
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 8e-17
Identities = 31/133 (23%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 88 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLI 146
D + G S++DL+GK + + F++ + SA L E+Y K +G FEI I
Sbjct: 17 DIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQG--FEIYQI 74
Query: 147 SLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGK--------- 197
SLD +E +K ++PW+ + + + + ++ LP++ ++ + +
Sbjct: 75 SLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTNLPSVFLVNRNNELSARGENIK 134
Query: 198 TLHSNVAEAIEEH 210
L + + +E H
Sbjct: 135 DLDEAIKKLLEGH 147
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 7e-22
Identities = 29/148 (19%), Positives = 58/148 (39%), Gaps = 12/148 (8%)
Query: 248 DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI 306
G V ++D GK +L+ F C CR P L+ Y K++ + +
Sbjct: 11 AITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKG--FTIYGV 68
Query: 307 SSDRDQTSFDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 364
S+DR + + + + W + + + + G P ++ + P G+ + KE R
Sbjct: 69 STDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKELR 128
Query: 365 DMIAVHGAEAYPFTEERMKEI-DGQYNE 391
G + Y E+ + +G ++
Sbjct: 129 ------GDDLYNTVEKFVNGAKEGHHHH 150
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 1e-13
Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 18/132 (13%)
Query: 88 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES 140
I G +S++D +GK + + F + E P L++ Y K KG
Sbjct: 11 AITGIDLKGNSVSLNDFKGKYVLVDFW-----FAGCSWCRKET-PYLLKTYNAFKDKG-- 62
Query: 141 FEIVLISLDDEEESFKRDLG--SMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKT 198
F I +S D EE +K+ + W + + + + + + P ++++ P+GK
Sbjct: 63 FTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKI 122
Query: 199 LHSNV-AEAIEE 209
+ + + +
Sbjct: 123 VAKELRGDDLYN 134
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 1e-21
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 14/141 (9%)
Query: 248 DF-VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI 306
F NG V ++DL GK I + A WC PCR LP L + +K ++ + V +
Sbjct: 12 SFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKD--IHFVSL 69
Query: 307 SSDRDQTSFDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 364
S D+++ +++ + + L G + + ++GIP + + G+ I+
Sbjct: 70 SCDKNKKAWENMVTKDQLKGIQLHMG--TDRTFMDAYLINGIPRFILLDRDGKIISANM- 126
Query: 365 DMIAVHGAEAYPFTEERMKEI 385
+ P T E+ E+
Sbjct: 127 ------TRPSDPKTAEKFNEL 141
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 2e-13
Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 26/147 (17%)
Query: 88 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES 140
F +G+ +S++DL+GK I + A+ E P L E+ EK GK
Sbjct: 12 SFSYPDINGKTVSLADLKGKYIYIDVW-----ATWCGPCRGEL-PALKELEEKYAGKD-- 63
Query: 141 FEIVLISLDDEEESFKRDLGS--MPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKT 198
V +S D +++++ + + + L + ++ +P +++ DGK
Sbjct: 64 IHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDR--TFMDAYLINGIPRFILLDRDGKI 121
Query: 199 LHSNVAEAIEEHGVGAFPFTPEKFAEL 225
+ +N+ + P T EKF EL
Sbjct: 122 ISANM-------TRPSDPKTAEKFNEL 141
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 2e-20
Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 8/116 (6%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDA---YKKIKERNESLEVVFISSDR 310
+G +S L + +L+F C CR F + + ++ L V+ I D
Sbjct: 16 HGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGT--LRVLAIYPDE 73
Query: 311 DQTSFDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 364
++ + W+ + A + + + P + + R I K+
Sbjct: 74 NREEWATKAVYMPQGWIVG-WNKAGDIRTRQLYDIRATPTIYLLDGRKRVILKDTS 128
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 1e-14
Identities = 19/128 (14%), Positives = 49/128 (38%), Gaps = 8/128 (6%)
Query: 88 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVE---VYEKLKGKGESFEI 143
DF ++ G +S L+ + L+F +F E E ++ +
Sbjct: 9 DFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGT--LRV 66
Query: 144 VLISLDDEEESFKRDLGSMPWLALPFKDKSRE-KLARYFELSTLPTLVIIGPDGKTLHSN 202
+ I D+ E + MP + +K+ + + + +++ PT+ ++ + + +
Sbjct: 67 LAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVILKD 126
Query: 203 V-AEAIEE 209
E + +
Sbjct: 127 TSMEQLID 134
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 1e-04
Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS-DGGVEIIREY 50
W+ + + +L+ + P + +LD +V+ D +E + +Y
Sbjct: 87 QGWIVG--WNKAGDIRTRQLYDIRATPTIYLLDGRKRVILKDTSMEQLIDY 135
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 5e-20
Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 5/121 (4%)
Query: 248 DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKE-RNESLEVVF 305
+F +G K + + LL+ + C C + L + + L+V+
Sbjct: 13 NFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLS 72
Query: 306 ISSDRDQTSFDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEA 363
I D + + + W + + + IP L + + + K+A
Sbjct: 73 IYPDEELDEWKKHRNDFAKEWTNG-YDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKDA 131
Query: 364 R 364
Sbjct: 132 T 132
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 3e-12
Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 8/128 (6%)
Query: 88 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVE---VYEKLKGKGESFEI 143
+F G K ++ + L+ + A AE L + K ++
Sbjct: 13 NFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKK--LKV 70
Query: 144 VLISLDDEEESFKRDLGSMPWLALPFKDKSRE-KLARYFELSTLPTLVIIGPDGKTLHSN 202
+ I D+E + +K+ DK K ++L +PTL ++ + L +
Sbjct: 71 LSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKD 130
Query: 203 V-AEAIEE 209
+ +E+
Sbjct: 131 ATLQKVEQ 138
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 1e-04
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS-DGGVEIIREY 50
W D E K L+ + IP L +LD+N VL D ++ + +Y
Sbjct: 91 KEWTNG--YDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKDATLQKVEQY 139
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 8e-20
Identities = 23/121 (19%), Positives = 39/121 (32%), Gaps = 5/121 (4%)
Query: 248 DFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS 307
N K + G+ LL F A + RA +L + K + + IS
Sbjct: 15 RIEFLGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDK--IAMCSIS 72
Query: 308 SDRDQTSFDEFFK--GMPW-LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 364
D ++ F E K + G +++ L +K+ + I G I
Sbjct: 73 MDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDLRKGFKNFLINDEGVIIAANVT 132
Query: 365 D 365
Sbjct: 133 P 133
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 4e-11
Identities = 26/133 (19%), Positives = 44/133 (33%), Gaps = 20/133 (15%)
Query: 88 DFVISSDGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGESF 141
+ K S + G+ L F A+ A +L K
Sbjct: 15 RIEFLGNDAKASFHNQLGRYTLLNFW-----AAYDAESRARN-VQLANEVNKFGPDK--I 66
Query: 142 EIVLISLDDEEESF----KRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGK 197
+ IS+D++E F K D + K E L + ++L +I +G
Sbjct: 67 AMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESE-LYKKYDLRKGFKNFLINDEGV 125
Query: 198 TLHSNV-AEAIEE 209
+ +NV E + E
Sbjct: 126 IIAANVTPEKLTE 138
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 2e-19
Identities = 39/163 (23%), Positives = 68/163 (41%), Gaps = 22/163 (13%)
Query: 248 DF-VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI 306
+F + NG ++ +SDL GK + L F WC PC+ P + + YK K + +E+V +
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG--VEIVAV 65
Query: 307 SSDRDQTSFDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 364
+ + + F K G+ + + D + + VS +P I P G+ +
Sbjct: 66 NVGESKIAVHNFMKSYGVNFPVVL--D-TDRQVLDAYDVSPLPTTFLINPEGKVVKV--- 119
Query: 365 DMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPENVKHALHEH 407
V G TE + + N + G ++H H H
Sbjct: 120 ----VTG----TMTESMIHDY---MNLIKPGETSGLEHHHHHH 151
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 1e-10
Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 22/120 (18%)
Query: 88 DFVISS-DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES 140
+FV+ +G++I +SDL+GK + L F + EF P + Y+ K +G
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFW-----GTWCEPCKKEF-PYMANQYKHFKSQG-- 59
Query: 141 FEIVLISLDDEEE---SFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGK 197
EIV +++ + + +F + G + + + D R+ + +++S LPT +I P+GK
Sbjct: 60 VEIVAVNVGESKIAVHNFMKSYG-VNFPVVL--DTDRQ-VLDAYDVSPLPTTFLINPEGK 115
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 5e-19
Identities = 19/115 (16%), Positives = 40/115 (34%), Gaps = 4/115 (3%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 313
G + D+ K +L+F C C+ PKL D + K + + ++V + +R
Sbjct: 20 TGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKG--IQVYAANIERKDE 77
Query: 314 SFDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDM 366
+ +F + + + + P+L + + I K
Sbjct: 78 EWLKFIRSKKIGGWLNVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRIGYE 132
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 1e-13
Identities = 19/127 (14%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
Query: 88 DFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLI 146
+ + + G + D++ K L+F S + TP+L + + K + KG ++
Sbjct: 13 NLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKG--IQVYAA 70
Query: 147 SLDDEEESFKR---DLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203
+++ ++E + + WL + K+ +++ P L ++ + + +
Sbjct: 71 NIERKDEEWLKFIRSKKIGGWLNV-RDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRI 129
Query: 204 -AEAIEE 209
E +++
Sbjct: 130 GYENLDD 136
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 1e-18
Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 12/142 (8%)
Query: 248 DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI 306
DF + G +G +SD GK + L F A WC C A LP + K+ + L VV
Sbjct: 4 DFELMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSP 63
Query: 307 SSDRDQT--SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 364
+Q+ F ++KG+ + LP L + V P I G+
Sbjct: 64 GHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGK------- 116
Query: 365 DMIAVH-GAEAYPFTEERMKEI 385
++ H G + +KE+
Sbjct: 117 -LVKTHPGFMEKDAILQTLKEL 137
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-10
Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 20/115 (17%)
Query: 94 DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGESFEIVLIS 147
DG+ +SD +GK + L F AS A P E+ ++ + ++S
Sbjct: 11 DGKTYRLSDYKGKKVYLKFW-----ASWCSICLASL-PDTDEIAKEAGDDY--VVLTVVS 62
Query: 148 LD----DEEESFKRDLGSMPWLALP-FKDKSREKLARYFELSTLPTLVIIGPDGK 197
E FK + + LP D S + L + + + PT I +GK
Sbjct: 63 PGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGK-LLETYGVRSYPTQAFIDKEGK 116
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 2e-18
Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 7/116 (6%)
Query: 248 DFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS 307
DF + G V +SD G + L F A WC PCR P + K K + +VV ++
Sbjct: 11 DFALPGKTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKG--FQVVAVN 68
Query: 308 SDRDQTSFDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 361
D +F + K R + V G+P I +G+ + +
Sbjct: 69 LDAKTGDAMKFLAQVPAEF---TVAFDPKGQTPRLYGVKGMPTSFLIDRNGKVLLQ 121
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 3e-10
Identities = 33/158 (20%), Positives = 57/158 (36%), Gaps = 32/158 (20%)
Query: 88 DFVISSDGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGESF 141
DF + + +SD G + L F AS F P + ++ K K KG F
Sbjct: 11 DFALPGKTGVVKLSDKTGSVVYLDFW-----ASWCGPCRQSF-PWMNQMQAKYKAKG--F 62
Query: 142 EIVLISLDDEEE---SFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKT 198
++V ++LD + F + + D + R + + +PT +I +GK
Sbjct: 63 QVVAVNLDAKTGDAMKFLAQVP-AEFTVAF--DPKGQ-TPRLYGVKGMPTSFLIDRNGK- 117
Query: 199 LHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQ 236
+ VG P E +I A ++
Sbjct: 118 --------VLLQHVGFRPADKEAL--EQQILAALGGNE 145
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 3e-18
Identities = 26/143 (18%), Positives = 62/143 (43%), Gaps = 16/143 (11%)
Query: 248 DFVV-GKNGGKVPVS--DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVV 304
F + + G K+ S + +LL F A WC P +L K+ K +N++ ++
Sbjct: 13 YFSLPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYK-KNKNFAML 71
Query: 305 FISSDRDQTSFDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 362
IS D D+ +++ K + W + + ++++ + +P + + P+G+ + ++
Sbjct: 72 GISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILARD 131
Query: 363 ARDMIAVHGAEAYPFTEERMKEI 385
+ ++KE+
Sbjct: 132 IQ----------GEALTGKLKEL 144
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 4e-10
Identities = 24/124 (19%), Positives = 52/124 (41%), Gaps = 23/124 (18%)
Query: 98 ISVSDLEGKTIGLYFSMSSYK---------AS------AEFTPRLVEVYEKLKGKGESFE 142
S+ + +G+ + S ++ AS L + ++ K K ++F
Sbjct: 14 FSLPNEKGEKLSR--SAERFRNRYLLLNFWASWCDPQPEAN-AELKRLNKEYK-KNKNFA 69
Query: 143 IVLISLDDEEES---FKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 199
++ ISLD + E+ + + W + + A+ + + TLPT +++ P GK L
Sbjct: 70 MLGISLDIDREAWETAIKKDT-LSWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKIL 128
Query: 200 HSNV 203
++
Sbjct: 129 ARDI 132
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Length = 150 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 1e-17
Identities = 29/137 (21%), Positives = 59/137 (43%), Gaps = 13/137 (9%)
Query: 254 NGGKVPVSD--LAGKTILLYFSAHWCPPC--RAFLPKLIDAYKKIKERNESLEVVFISSD 309
G K+ S K++L+ F A W + +L + YKK K+ N+ + ++ IS D
Sbjct: 20 KGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKK-NKYIGMLGISLD 78
Query: 310 RDQTSFDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMI 367
D+ + + K + W + + +++++ + IP + + G+ + K R
Sbjct: 79 VDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKNLR--- 135
Query: 368 AVHGAEAYPFTEERMKE 384
G E E ++E
Sbjct: 136 ---GEELKKKIENIVEE 149
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Length = 150 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 7e-10
Identities = 28/136 (20%), Positives = 60/136 (44%), Gaps = 21/136 (15%)
Query: 88 DF-VISSDGRKISVSD--LEGKTIGLYFSMSSYKAS--------AEFTPRLVEVYEKLKG 136
F + ++ G KI+ S + K++ + F AS L E+Y+K K
Sbjct: 13 FFSLPNAKGEKITRSSDAFKQKSLLINFW-----ASWNDSISQKQSN-SELREIYKKYKK 66
Query: 137 KGESFEIVLISLDDEEESFKR--DLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGP 194
++ ISLD +++ +K ++ W + ++A+ + + +P +++
Sbjct: 67 NKY-IGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSS 125
Query: 195 DGKTLHSNV-AEAIEE 209
DGK L N+ E +++
Sbjct: 126 DGKILAKNLRGEELKK 141
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 2e-17
Identities = 22/143 (15%), Positives = 53/143 (37%), Gaps = 12/143 (8%)
Query: 248 DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI 306
+F + +G ++ GK +L+ F A WCP CR +P + K + + L V+ +
Sbjct: 23 NFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGD--LVVLAV 80
Query: 307 SSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDM 366
+ ++ ++ F + +++ + +P + G + +
Sbjct: 81 NVEKRFPEKYRRAP----VSFNFLSDATGQVQQRYGANRLPDTFIVDRKGIIRQRVTGGI 136
Query: 367 IAVHGAEAYPFTEERMKEIDGQY 389
P +K ++G +
Sbjct: 137 -----EWDAPKVVSYLKSLEGHH 154
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 1e-10
Identities = 19/146 (13%), Positives = 46/146 (31%), Gaps = 30/146 (20%)
Query: 88 DFVISS-DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES 140
+F + + G S++ GK + + F AS E P + + +
Sbjct: 23 NFKLPTLSGENKSLAQYRGKIVLVNFW-----ASWCPYCRDEM-PSMDRLVKSFPKGD-- 74
Query: 141 FEIVLISLDDEEESFKRDLGSMPWLALP-FKDKSREKLARYFELSTLPTLVIIGPDGKTL 199
++ ++++ R ++ D + + + + + + LP I+ G
Sbjct: 75 LVVLAVNVEKRFPEKYRRAP----VSFNFLSDATGQ-VQQRYGANRLPDTFIVDRKGI-- 127
Query: 200 HSNVAEAIEEHGVGAFPFTPEKFAEL 225
I + G + K
Sbjct: 128 -------IRQRVTGGIEWDAPKVVSY 146
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 8e-17
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 313
+G + L GK ++ F A WCPPCR+ +P ++ K R V I+ +
Sbjct: 23 DGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRG--FTFVGIAVNEQLP 80
Query: 314 SFDEFFK--GMPWLAL--PFGDARKASLSRKFKVSGIPMLVAIGPSGR 357
+ + K G+ + + R + ++GIP I SG
Sbjct: 81 NVKNYMKTQGIIYPVMMATPELIRAFNGYIDGGITGIPTSFVIDASGN 128
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 4e-10
Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 18/126 (14%)
Query: 94 DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGESFEIVLIS 147
DG+ S + L+GK + F A+ +E P +V+V + +G F V I+
Sbjct: 23 DGKPFSSASLKGKAYIVNFF-----ATWCPPCRSEI-PDMVQVQKTWASRG--FTFVGIA 74
Query: 148 LDDEEE---SFKRDLG-SMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203
++++ ++ + G P + + ++ +PT +I G V
Sbjct: 75 VNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIV 134
Query: 204 AEAIEE 209
+
Sbjct: 135 GPRSKA 140
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 1e-16
Identities = 23/132 (17%), Positives = 40/132 (30%), Gaps = 14/132 (10%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 313
+G + L GK +L+F WCP C A P L N ++ V I++ D
Sbjct: 13 SGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAA----NPAVTFVGIATRADVG 68
Query: 314 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAE 373
+ F L + + ++ V P V G
Sbjct: 69 AMQSFVSKYN-LNFTNLNDADGVIWARYNVPWQPAFVFYRADGT---------STFVNNP 118
Query: 374 AYPFTEERMKEI 385
+++ +
Sbjct: 119 TAAMSQDELSGR 130
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 7e-07
Identities = 21/113 (18%), Positives = 32/113 (28%), Gaps = 23/113 (20%)
Query: 94 DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGESFEIVLIS 147
G + L+GK L+F AE P L +V V I+
Sbjct: 13 SGAPFDGASLQGKPAVLWFW-----TPWCPFCNAEA-PSLSQVAAANPA----VTFVGIA 62
Query: 148 LDDEEE---SFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGK 197
+ SF + + L D + + + P V DG
Sbjct: 63 TRADVGAMQSFVSKYN-LNFTNLN--DADGV-IWARYNVPWQPAFVFYRADGT 111
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 1e-16
Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 15/147 (10%)
Query: 248 DFV-VGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI 306
DF NG V +SDL G+ +++ F A WCPPCR +P ++ + + ++ +
Sbjct: 10 DFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKP--FRMLCV 67
Query: 307 SSDRDQTSF-DEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI------ 359
S D +EFF+ LP + + + +G+P I G +
Sbjct: 68 SIDEGGKVAVEEFFRKTG-FTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGA 126
Query: 360 ----TKEARDMIAVHGAEAYPFTEERM 382
E + ++A
Sbjct: 127 MEWDHPEVIAFLNNELSKAREGHHHHH 153
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 5e-09
Identities = 32/164 (19%), Positives = 66/164 (40%), Gaps = 36/164 (21%)
Query: 88 DFVISS-DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES 140
DF +++ +G + +SDL+G+ + + F A+ E P ++ + + GK
Sbjct: 10 DFTLNTLNGEVVKLSDLKGQVVIVNFW-----ATWCPPCREEI-PSMMRLNAAMAGKP-- 61
Query: 141 FEIVLISLDDEEE----SFKRDLGSMPWLALP-FKDKSREKLARYFELSTLPTLVIIGPD 195
F ++ +S+D+ + F R G LP D + + + + + +P +I
Sbjct: 62 FRMLCVSIDEGGKVAVEEFFRKTG----FTLPVLLDADKR-VGKLYGTTGVPETFVIDRH 116
Query: 196 GKTLHSNVAEAIEEHGVGAFPFTPEKFAEL--AEIQRAKEESQT 237
G I + VGA + + E+ +A+E
Sbjct: 117 GV---------ILKKVVGAMEWDHPEVIAFLNNELSKAREGHHH 151
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 2e-16
Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 9/142 (6%)
Query: 248 DF-VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI 306
DF + +G +V +S L GK ++L F+A WC CR +P + + N ++ I
Sbjct: 15 DFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGI 74
Query: 307 SSDRDQTSFDEFFK--GMPWLALPFGDARKASLSRKFKV--SGIPMLVAIGPSGRTITKE 362
D F K G+ + D A + K+ + +GI V I G+ I K
Sbjct: 75 DRDEPLEKVLAFAKSTGVTYPLGL--D-PGADIFAKYALRDAGITRNVLIDREGK-IVKL 130
Query: 363 ARDMIAVHGAEAYPFTEERMKE 384
R A E +KE
Sbjct: 131 TRLYNEEEFASLVQQINEMLKE 152
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-10
Identities = 35/161 (21%), Positives = 63/161 (39%), Gaps = 33/161 (20%)
Query: 88 DFVISS-DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES 140
DF I+ DG+++++S L GK + L F+ AS E P + +
Sbjct: 15 DFTITLTDGKQVTLSSLRGKVVMLQFT-----ASWCGVCRKEM-PFIEKDIWLKHKDNAD 68
Query: 141 FEIVLISLDDEEE---SFKRDLGSMPWLALPFKDKSREKLARY-FELSTLPTLVIIGPDG 196
F ++ I D+ E +F + G + + D + A+Y + + V+I +G
Sbjct: 69 FALIGIDRDEPLEKVLAFAKSTG-VTYPLGL--DPGADIFAKYALRDAGITRNVLIDREG 125
Query: 197 KTLHSNVAEAIEEHGVGAFPFTPEKFAELAE-IQRAKEESQ 236
K I + + E+FA L + I +E
Sbjct: 126 K---------IVKLTRL---YNEEEFASLVQQINEMLKEGH 154
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 3e-16
Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 16/142 (11%)
Query: 248 DF-VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI 306
F + +G V +DL GK L+ F CP C + +PK+I K +N +V+ +
Sbjct: 10 AFSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKN--FQVLAV 67
Query: 307 SSDRDQTS-FDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEA 363
+ D ++ K G+P+ ++ + F P V IG G +
Sbjct: 68 AQPIDPIESVRQYVKDYGLPF---TVMYDADKAVGQAFGTQVYPTSVLIGKKGEILKT-- 122
Query: 364 RDMIAVHGAEAYPFTEERMKEI 385
G + + +
Sbjct: 123 -----YVGEPDFGKLYQEIDTA 139
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-08
Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 23/127 (18%)
Query: 88 DFVISS-DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES 140
F + G+ +S +DL+GK + F +E P++++ K K
Sbjct: 10 AFSLPDLHGKTVSNADLQGKVTLINFW-----FPSCPGCVSEM-PKIIKTANDYKNKN-- 61
Query: 141 FEIVLISLDDEEES----FKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDG 196
F+++ ++ + + +D G +P+ + DK + + F PT V+IG G
Sbjct: 62 FQVLAVAQPIDPIESVRQYVKDYG-LPFTVMYDADK---AVGQAFGTQVYPTSVLIGKKG 117
Query: 197 KTLHSNV 203
+ L + V
Sbjct: 118 EILKTYV 124
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 3e-16
Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 7/114 (6%)
Query: 248 DFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS 307
+ K+ + L ++ A WC PCR +P + YK K+ + +++V I+
Sbjct: 7 ELAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGS--VDMVGIA 64
Query: 308 SDRDQTSFDEFFK--GMPWLALPFGDARKASLSRKF--KVSGIPMLVAIGPSGR 357
D F K + + + A + + + V +P V P
Sbjct: 65 LDTSDN-IGNFLKQTPVSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCG 117
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 4e-11
Identities = 21/158 (13%), Positives = 45/158 (28%), Gaps = 30/158 (18%)
Query: 88 DFVISSDGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGESF 141
+ D S+ L+ + A+ E P + + Y+ K
Sbjct: 7 ELAGWKDNTPQSLQSLKAPVRIVNLW-----ATWCGPCRKEM-PAMSKWYKAQKKGS--V 58
Query: 142 EIVLISLDDEE--ESFKRDLG-SMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKT 198
++V I+LD + +F + S P + + LP V+ P
Sbjct: 59 DMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCG- 117
Query: 199 LHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQ 236
+ G + + ++ A + +
Sbjct: 118 --------YRQTITG--EVNEKSLTDA--VKLAHSKCR 143
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 9e-16
Identities = 34/113 (30%), Positives = 46/113 (40%), Gaps = 7/113 (6%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-DQ 312
+G +SD GKT+L+ A WC PCR +P L + K+ N EVV I+ D D
Sbjct: 49 DGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPN--FEVVAINIDTRDP 106
Query: 313 TSFDEFFK--GMPWLALPFGDARKAS--LSRKFKVSGIPMLVAIGPSGRTITK 361
F K + L K L + G+P V + P G I
Sbjct: 107 EKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIAT 159
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 6e-09
Identities = 33/144 (22%), Positives = 54/144 (37%), Gaps = 30/144 (20%)
Query: 94 DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGESFEIVLIS 147
DG+ +SD GKT+ + A+ E P L E+ KL G FE+V I+
Sbjct: 49 DGKPKKLSDFRGKTLLVNLW-----ATWCVPCRKEM-PALDELQGKLSGPN--FEVVAIN 100
Query: 148 LDDEE----ESFKRDLGSMPWLALPF--KDKSREKLARYFELSTLPTLVIIGPDGKTLHS 201
+D + ++F ++ + L K K + L +PT V++ P G
Sbjct: 101 IDTRDPEKPKTFLKEAN-LTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGC---- 155
Query: 202 NVAEAIEEHGVGAFPFTPEKFAEL 225
G + E +L
Sbjct: 156 -----EIATIAGPAEWASEDALKL 174
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 3e-15
Identities = 27/157 (17%), Positives = 51/157 (32%), Gaps = 32/157 (20%)
Query: 248 DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI 306
F + +G + ++++ G ++L+F A WCP C L +K +E + V+ I
Sbjct: 19 SFSLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYRE----ISVIAI 74
Query: 307 SSDRDQT------------------SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348
+ F +F + SL KF V I
Sbjct: 75 DFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVM-DDGSLVEKFNVRSIDY 133
Query: 349 LVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEI 385
+V + S ++ + E +K +
Sbjct: 134 IVIMDKSSN--------VLYAGTTPSLGELESVIKSV 162
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 1e-07
Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 34/146 (23%)
Query: 88 DFVISS-DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES 140
F +++ DG IS++++ G + L+F A+ L + EK +
Sbjct: 19 SFSLTTIDGEVISLNNVGGDVVILWFM-----AAWCPSCVYMA-DLLDRLTEKYRE---- 68
Query: 141 FEIVLISLDDEEESFKRDLGSMPWLALPFKDKSRE-----------------KLARYFEL 183
++ I E L + + R+ L F +
Sbjct: 69 ISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMDDGSLVEKFNV 128
Query: 184 STLPTLVIIGPDGKTLHSNVAEAIEE 209
++ +VI+ L++ ++ E
Sbjct: 129 RSIDYIVIMDKSSNVLYAGTTPSLGE 154
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 8e-15
Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 4/104 (3%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 313
+G L GK +L+F A WCP C+ P + E + V ++
Sbjct: 14 DGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE----VTFVGVAGLDQVP 69
Query: 314 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGR 357
+ EF P S+ F V+ P + P G
Sbjct: 70 AMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGN 113
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 6e-06
Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 17/117 (14%)
Query: 88 DFVISS-DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES 140
F + DG L GK L+F A E P + +V
Sbjct: 7 QFSAKTLDGHDFHGESLLGKPAVLWFW-----APWCPTCQGEA-PVVGQVAASHPEV--- 57
Query: 141 FEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGK 197
V ++ D+ + + + P + + F ++ P + P G
Sbjct: 58 -TFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGN 113
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164 | Back alignment and structure |
|---|
Score = 70.6 bits (173), Expect = 1e-14
Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 14/140 (10%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD---- 309
+ V K L+ F A WCP C + L + + K + ++ ++S
Sbjct: 27 DNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSS--ANLITVASPGFLH 84
Query: 310 -RDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIA 368
+ F +++ G+ + LP ++++ +S P IG G
Sbjct: 85 EKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRI------- 137
Query: 369 VHGAEAYPFTEERMKEIDGQ 388
V G+ ++ +
Sbjct: 138 VKGSINEAQALALIRNPNAD 157
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 5e-06
Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 29/120 (24%)
Query: 94 DGRKISVSDLEGKTIGLYF----------SMSSYKASAEFTPRLVEVYEKLKGKGESFEI 143
D R SV + K + F + + + + K +
Sbjct: 27 DNRPASVYLKKDKPTLIKFWASWCPLCLSEL----------GQAEKWAQDAKFSS--ANL 74
Query: 144 VLISLD-----DEEESFKRDLGSMPWLALP-FKDKSREKLARYFELSTLPTLVIIGPDGK 197
+ ++ ++ F++ + + LP D +A+ +S P+ +IG DG
Sbjct: 75 ITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGT-IAQNLNISVYPSWALIGKDGD 133
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Length = 352 | Back alignment and structure |
|---|
Score = 73.9 bits (181), Expect = 2e-14
Identities = 22/139 (15%), Positives = 50/139 (35%), Gaps = 19/139 (13%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS----- 308
+ + L GK +L+ F A+ C C+ +P ++ Y+ K+ L V+ + +
Sbjct: 71 GNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSG--LAVIGVHTPEYAF 128
Query: 309 DRDQTSFDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDM 366
++ + + G+ + P + ++ P I +G
Sbjct: 129 EKVPGNVAKGAANLGISY---PIALDNNYATWTNYRNRYWPAEYLIDATGTVRHI----- 180
Query: 367 IAVHGAEAYPFTEERMKEI 385
G Y TE ++++
Sbjct: 181 --KFGEGDYNVTETLVRQL 197
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Length = 352 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 2e-07
Identities = 18/153 (11%), Positives = 41/153 (26%), Gaps = 46/153 (30%)
Query: 92 SSDGRKISVSDLEGKTIGLYF----------SMSSYKASAEFTPRLVEVYEKLKGKGESF 141
+ + I + L GK + + F ++ P +V Y+ K G
Sbjct: 69 TPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAI----------PHVVGWYQAYKDSG--L 116
Query: 142 EIVLISLDDEE--------ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIG 193
++ + + +LG + + P + + P +I
Sbjct: 117 AVIGVHTPEYAFEKVPGNVAKGAANLG-ISY---PIALDNNYATWTNYRNRYWPAEYLID 172
Query: 194 PDGK------------TLHSNVAEAIEEHGVGA 214
G + V + + + G
Sbjct: 173 ATGTVRHIKFGEGDYNVTETLVRQLLNDAKPGV 205
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Length = 148 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 2e-14
Identities = 23/138 (16%), Positives = 47/138 (34%), Gaps = 18/138 (13%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS----- 308
NG + K L++F + C C+ +P++ + K +++ L VV +
Sbjct: 18 NGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ---LNVVAVHMPRSED 74
Query: 309 DRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIA 368
D D E + P +L+ F+ +P +G+ +
Sbjct: 75 DLDPGKIKETAAEHD-ITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQ--------LRH 125
Query: 369 VH-GAEAYPFTEERMKEI 385
G E+R+ +
Sbjct: 126 FQAGGSGMKMLEKRVNRV 143
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Length = 148 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 6e-05
Identities = 19/147 (12%), Positives = 39/147 (26%), Gaps = 47/147 (31%)
Query: 94 DGRKISVSDLEGKTIGLYF----------SMSSYKASAEFTPRLVEVYEKLKGKGESFEI 143
+G + K ++F +M P++ E +K + + +
Sbjct: 18 NGEVTREQLIGEKPTLIHFWSISCHLCKEAM----------PQVNEFRDKYQDQ---LNV 64
Query: 144 VLISLDDEE--------ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPD 195
V + + E + + + P S L FE +P +
Sbjct: 65 VAVHMPRSEDDLDPGKIKETAAEHD----ITQPIFVDSDHALTDAFENEYVPAYYVFDKT 120
Query: 196 GK------------TLHSNVAEAIEEH 210
G+ L V + E
Sbjct: 121 GQLRHFQAGGSGMKMLEKRVNRVLAET 147
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 1e-13
Identities = 20/114 (17%), Positives = 45/114 (39%), Gaps = 7/114 (6%)
Query: 251 VGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNES----LEVVFI 306
+ + G ++ +SD + ++L WC PCR+ L +++++ V+ I
Sbjct: 45 LMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGI 104
Query: 307 S-SDRDQTSFDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGR 357
+ D + +F G+ + ++ A+ S IP + + R
Sbjct: 105 NVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHR 158
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 7e-08
Identities = 19/121 (15%), Positives = 44/121 (36%), Gaps = 21/121 (17%)
Query: 91 ISSDGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES---- 140
+ +G +I++SD E + + L +E L ++E+L+ G
Sbjct: 45 LMEEGTQINLSDFENQVVILNAW-----GQWCAPCRSES-DDLQIIHEELQAAGNGDTPG 98
Query: 141 FEIVLISLDDEEES----FKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDG 196
++ I++ D F D G + + ++ S +PT +++
Sbjct: 99 GTVLGINVRDYSRDIAQDFVTDNG-LDYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQH 157
Query: 197 K 197
+
Sbjct: 158 R 158
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Length = 158 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 4e-13
Identities = 21/114 (18%), Positives = 36/114 (31%), Gaps = 13/114 (11%)
Query: 255 GGKVPVSDLAGKTILLYFSAHWCPPCRA-FLPKLIDAYKKIKERNESLEVVFISSD---- 309
+ ++DL GK I++ CP C +P E + V+ + +
Sbjct: 18 ATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDK--VAVLGLHTVFEHH 75
Query: 310 --RDQTSFDEFFKGM----PWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGR 357
S F P GD +++ G P L+ I +G
Sbjct: 76 EAMTPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAGD 129
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Length = 158 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-08
Identities = 20/150 (13%), Positives = 44/150 (29%), Gaps = 28/150 (18%)
Query: 88 DFVISS---DGRKISVSDLEGKTIGLYF-SMSSYKASAEFTPRLVEVYEKLKGKGESFEI 143
+ I ++++DL GK I + M P +V +
Sbjct: 8 ELQIQQWFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDK--VAV 65
Query: 144 VLISLDDEE---------ESFKRDLG-SMPWLALPFKDKSREKLARYFELSTLPTLVIIG 193
+ + E ++F + P D + + +++ P+L++I
Sbjct: 66 LGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLID 125
Query: 194 PDGK------------TLHSNVAEAIEEHG 211
G L + +A + E
Sbjct: 126 KAGDLRAHHFGDVSELLLGAEIATLLGEAA 155
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 4e-13
Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS---SDR 310
G + + + G+ +L+F WCPPC+ LP+ Y + +++V ++ S++
Sbjct: 24 EGEDISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDS--VKLVTVNLVNSEQ 80
Query: 311 DQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGR 357
+Q ++F K L P K L +++ + IP + G
Sbjct: 81 NQQVVEDFIKANK-LTFPIVLDSKGELMKEYHIITIPTSFLLNEKGE 126
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 4e-07
Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 31/131 (23%)
Query: 94 DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGESFEIVLIS 147
+G IS+ + +G+ L+F S E P+ Y+ ++V ++
Sbjct: 24 EGEDISIPN-KGQKTILHFW-----TSWCPPCKKEL-PQFQSFYDAHPSDS--VKLVTVN 74
Query: 148 LDDEEES------FKRDLGSMPWLALPFK---DKSREKLARYFELSTLPTLVIIGPDGKT 198
L + E++ F + L F D E L + + + T+PT ++ G+
Sbjct: 75 LVNSEQNQQVVEDFIKANK------LTFPIVLDSKGE-LMKEYHIITIPTSFLLNEKGEI 127
Query: 199 LHSNVAEAIEE 209
+ + E
Sbjct: 128 EKTKIGPMTAE 138
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Length = 160 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 1e-12
Identities = 23/116 (19%), Positives = 46/116 (39%), Gaps = 14/116 (12%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRA-FLPKLIDAYKKIKERNESLEVVFISSDRDQ 312
N + DL GK +++ CP C +P+ ++ I E ++V+ + S +
Sbjct: 19 NHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQ--VQVIGLHSVFEH 76
Query: 313 TSFD------EFFK--GMPW---LALPFGDARKASLSRKFKVSGIPMLVAIGPSGR 357
F G+ + + +P R S +K+++ G P ++ GR
Sbjct: 77 HDVMTPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGR 132
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Length = 160 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 2e-06
Identities = 16/143 (11%), Positives = 46/143 (32%), Gaps = 28/143 (19%)
Query: 94 DGRKISVSDLEGKTIGLYF-SMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE 152
+ +S DL GK + + M P+ +++ + +++ + E
Sbjct: 19 NHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQ--VQVIGLHSVFEH 76
Query: 153 ---------ESFKRDLGSMPW---LALPFKDKSREKLARYFELSTLPTLVIIGPDGK--- 197
+ F + G + + + +P + + + + L P++++ G+
Sbjct: 77 HDVMTPEALKVFIDEFG-IKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQ 135
Query: 198 ---------TLHSNVAEAIEEHG 211
L + + E
Sbjct: 136 VQFGQVDDFVLGLLLGSLLSETD 158
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Length = 154 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 1e-11
Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 6/115 (5%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 313
G V + ++ +++ F A WC C+A P L ++ V+ +
Sbjct: 20 KGQPVTPATVSKPAVIV-FWASWCTVCKAEFPGLHRVAEETGVP---FYVISREPRDTRE 75
Query: 314 SFDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDM 366
E+ K L R ++ +FKV G P + G+ + A
Sbjct: 76 VVLEYMKTYPRFIPLLASDRDRPHEVAARFKVLGQPWTFVVDREGKVVALFAGRA 130
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Length = 154 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 1e-05
Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 36/160 (22%)
Query: 88 DFVISS-DGRKISVSDLEGKTIGLYFSMSSYKAS------AEFTPRLVEVYEKLKGKGES 140
DF++ G+ ++ + + + +++ AS AEF P L V E+ G
Sbjct: 13 DFLLLDPKGQPVTPATVSKPAVIVFW------ASWCTVCKAEF-PGLHRVAEE---TGVP 62
Query: 141 FEIVLISLDDEEE---SFKRDLG-SMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDG 196
F ++ D E + + +P LA +A F++ P ++ +G
Sbjct: 63 FYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHE--VAARFKVLGQPWTFVVDREG 120
Query: 197 KTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQ 236
K + G E + + A + +
Sbjct: 121 K---------VVALFAG--RAGREALLD--ALLLAGADLE 147
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 4e-09
Identities = 61/441 (13%), Positives = 119/441 (26%), Gaps = 131/441 (29%)
Query: 5 AVPFSDSETRDKLDELFKVMGIPH-LVILDE--NGKVLS--DGGVEII---REYGV---- 52
+ + +L L K + L++L N K + + +I+ R V
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 53 EGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDL--EGKTIG- 109
T + + + L L DL E T
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYL--------------DCRPQDLPREVLTTNP 327
Query: 110 LYFSM-----SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPW 164
S+ A+ + + +KL I+ SL+ E + R +
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVN--CDKLT------TIIESSLNVLEPAEYRKM----- 374
Query: 165 LALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAE 224
+ LS P I P L + I+
Sbjct: 375 ---------------FDRLSVFPPSAHI-PT-ILLSLIWFDVIKS--------DVMVVVN 409
Query: 225 ------LAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKVPVSDLAG--KTILLYFSAHW 276
L E ++ KE + ++ S+ L+ KV + + ++I+ +++
Sbjct: 410 KLHKYSLVE-KQPKESTISIPSIY----LEL-------KVKLENEYALHRSIVDHYNIPK 457
Query: 277 CPPCRAFLPKLIDAYKKIKERNESLEVVFIS---SDRDQTSFDEFFKGMPWLALPFGDAR 333
+P +D Y I + + F+ M +L F
Sbjct: 458 TFDSDDLIPPYLDQY--FYS--------HIGHHLKNIEHPERMTLFR-MVFLDFRF---- 502
Query: 334 KASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMA 393
L +K + A G T+ + + Y + + + D +Y +
Sbjct: 503 ---LEQKIRHDSTA-WNASGSILNTLQ----QL------KFY---KPYICDNDPKYERLV 545
Query: 394 KGWPENVKHALHEHELVLDRC 414
+ L + E L
Sbjct: 546 N----AILDFLPKIEENLICS 562
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 6e-09
Identities = 72/458 (15%), Positives = 146/458 (31%), Gaps = 121/458 (26%)
Query: 10 DSETRDKLDELFKVMG---IPHLVIL--DENGK-----VLSDGGVEIIREYGVEG----- 54
+ + +D D ++ I H+++ +G L E+++++ VE
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF-VEEVLRIN 90
Query: 55 YPFTVERIK-EMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKTIGLYFS 113
Y F + IK E ++ + R L + ++ F K +VS L+ Y
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF------AKYNVSRLQ-----PYLK 139
Query: 114 MSSYKASAEFTP-RLVEVYEKLKGKGESFEIVLIS--LDDEEESFKRDLGSMPWLALPFK 170
+ +A E P + V + + G G++ + + K D + WL L
Sbjct: 140 LR--QALLELRPAKNVLID-GVLGSGKT---WVALDVCLSYKVQCKMDFK-IFWLNLKNC 192
Query: 171 DKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAEL-AEIQ 229
+ L L L L I P+ + + + + + AE++
Sbjct: 193 NSPETVLEM---LQKL--LYQIDPNWTSRSDHSSN------------IKLRIHSIQAELR 235
Query: 230 RAKEESQTLESVLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFL----P 285
R + +LV L ++ F+ C+ L
Sbjct: 236 RLLKSKPYENCLLV---LL-------------NVQNAKAWNAFNLS----CKILLTTRFK 275
Query: 286 KLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF-KGMPWLALPFGDARKASLSRKFKVS 344
++ D + SL+ ++ D+ K +L D L R+ ++
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEV--KSLLLK---YLDCRPQD-----LPRE-VLT 324
Query: 345 GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYN-----EMAKGW--- 396
P ++I I + RD +A + ++ I+ N E K +
Sbjct: 325 TNPRRLSI------IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 397 ---PENVK---HAL---------HEHELVLDRCGVYSC 419
P + L + +V+++ YS
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 Length = 118 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 2e-06
Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 26/91 (28%)
Query: 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR--DQTSFDEFFKG 321
+T + CP CR F L + K + FI+S+ F
Sbjct: 28 KKETATFFIGRKTCPYCRKFAGTLSGVVAETK-----AHIYFINSEEPSQLNDLQAFRS- 81
Query: 322 MPWLALPFGDARKASLSRKFKVSGIPMLVAI 352
++ + +P V I
Sbjct: 82 ------------------RYGIPTVPGFVHI 94
|
| >1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A Length = 167 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 2e-06
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 260 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 319
+ + + LL WCP C+ L L + ++E+ IS R + +
Sbjct: 49 LQRIERRYRLLVAGEMWCPDCQINLAAL----DFAQRLQPNIELAIISKGRAEDDLRQRL 104
Query: 320 K 320
Sbjct: 105 A 105
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 2e-06
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 20/97 (20%)
Query: 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW 324
GK ++L A WC C+ F + + + + V + ++
Sbjct: 31 GKPVMLDLYADWCVACKEFEKYT---FSDPQVQKALADTVLLQANVTAN----------- 76
Query: 325 LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 361
DA+ +L + V G+P ++ G+ +
Sbjct: 77 ------DAQDVALLKHLNVLGLPTILFFDGQGQEHPQ 107
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 1e-05
Identities = 12/85 (14%), Positives = 25/85 (29%), Gaps = 27/85 (31%)
Query: 266 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWL 325
+ +LL+ C C L K+ + E +E + I Q
Sbjct: 19 QLVLLFIKTENCGVCDVMLRKV----NYVLENYNYVEKIEILLQDMQ------------- 61
Query: 326 ALPFGDARKASLSRKFKVSGIPMLV 350
++ ++ V P ++
Sbjct: 62 ----------EIAGRYAVFTGPTVL 76
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-05
Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 33/107 (30%)
Query: 264 AGKTILLYFSAHWCPPCRAF------LPKLIDAYKKIKERNESLEVVFISSDRDQTSFDE 317
G+ +++YF + CP C+ P + + F+ + + +
Sbjct: 18 HGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEA----------RFVVASVSVDTPEG 67
Query: 318 FFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 364
L+R+++V G P V + P + R
Sbjct: 68 -----------------QELARRYRVPGTPTFVFLVPKAGAWEEVGR 97
|
| >2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A Length = 200 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 13/108 (12%)
Query: 227 EIQRAKEESQTLESVLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPP-CRAFLP 285
E Q+ E ++ + G G + +L GK ++YF CP C L
Sbjct: 4 ETQKEAEANRGYGKPSLGGPFHLE-DMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELD 62
Query: 286 KLIDAYKKI-KERNESLEVVFISSD--RD--------QTSFDEFFKGM 322
KL + + +L+ +FI+ D RD + F G+
Sbjct: 63 KLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGL 110
|
| >3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A Length = 170 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 3e-05
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 243 VSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCP-PCRAFLPKLIDAYKKIKERNESL 301
V GD+ V G + + +L GK I+L C C L+ K+ +
Sbjct: 7 VPGDITLV-DSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDF 65
Query: 302 EVVFISSD-RD 311
V+ + D +D
Sbjct: 66 WVITFTFDPKD 76
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Length = 133 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 5e-05
Identities = 26/99 (26%), Positives = 34/99 (34%), Gaps = 18/99 (18%)
Query: 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 323
K LL F A+WC CRA L K + K + EVV I D +FD +
Sbjct: 28 THKPTLLVFGANWCTDCRA-LDKSLRNQKNTALIAKHFEVVKI----DVGNFDRNLELSQ 82
Query: 324 WLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 362
P GIP +V + G+
Sbjct: 83 AYGDP-------------IQDGIPAVVVVNSDGKVRYTT 108
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} Length = 172 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 6e-05
Identities = 21/128 (16%), Positives = 34/128 (26%), Gaps = 16/128 (12%)
Query: 248 DFVVGKNGGKVPVSDL---------AGKTILLYFSAHWCPPCRA-----FLPKLIDAYKK 293
DF + N D K ++L F+ + C CR + + +
Sbjct: 21 DFNLYTNEVHAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSI-- 78
Query: 294 IKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIG 353
I + + + G GD KF + P V I
Sbjct: 79 INNDYVLITLYVDNKTPLTEPVKIMENGTERTLRTVGDKWSYLQRVKFGANAQPFYVLID 138
Query: 354 PSGRTITK 361
G + K
Sbjct: 139 NEGNPLNK 146
|
| >2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} Length = 154 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 7e-05
Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 15/99 (15%)
Query: 265 GKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKER-NESLEVVFISSDRDQTSFDEFFKGM 322
K I L+F+ + WC C + I + K + + D Q +
Sbjct: 47 HKPIGLFFTGSDWCMWCIK-MQDQILQSSEFKHFAGVH--LHMVEVDFPQKNHQP----- 98
Query: 323 PWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 361
+ L ++KV+G P LV I G+ + +
Sbjct: 99 -----EEQRQKNQELKAQYKVTGFPELVFIDAEGKQLAR 132
|
| >3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* Length = 116 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 9e-05
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 1/58 (1%)
Query: 261 SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 318
D + LL F C C + ++ Y E + V + E
Sbjct: 14 DDDKAELRLLMFEQPGCLYCARWDAEIAPQYPLTDE-GRAAPVQRLQMRDPLPPGLEL 70
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 1e-04
Identities = 42/259 (16%), Positives = 76/259 (29%), Gaps = 40/259 (15%)
Query: 45 EIIREYGVEGYPFTVERIKEMKEQEERAKRE-QSLRSVLTSHSRDFVI-SSDGRKISVSD 102
++ +Y ++ + + + + ++L + + VI ++ +
Sbjct: 73 DVFSKYQLDKDGVVLFKKFDEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFG 132
Query: 103 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSM 162
E KT L F S E KGK I+ I +D + +R L
Sbjct: 133 GEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGK-----ILFIFIDSDHTDNQRILEFF 187
Query: 163 PWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKF 222
+ P + +I + + T E+
Sbjct: 188 G-----------------LKKEECPAVRLITLEEEMTKYKPESE---------ELTAERI 221
Query: 223 AELAEIQRAKEESQTLESVLVSGDLDF-----VVGKNGGKVPVSDLAGKTILLYFSAHWC 277
E + L S + D D +VGKN V D K + + F A WC
Sbjct: 222 TEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDV-AFD-EKKNVFVEFYAPWC 279
Query: 278 PPCRAFLPKLIDAYKKIKE 296
C+ P + K+
Sbjct: 280 GHCKQLAPIWDKLGETYKD 298
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 1e-04
Identities = 29/266 (10%), Positives = 59/266 (22%), Gaps = 53/266 (19%)
Query: 36 GKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKRE-QSLRSVLTSHSRDFVISSD 94
G + + Y ++ YP T + E + + + V+S
Sbjct: 491 GTLDCTIHEGLCNMYNIQAYP-TTVVFNQSSIHEYEGHHSAEQILEFIEDLRNPSVVSLT 549
Query: 95 G---RKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE 151
++ + + F S P + L G I + S+D
Sbjct: 550 PSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGL-----INVGSVDCG 604
Query: 152 EESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHG 211
+ + P + +A + H
Sbjct: 605 QY---------------------HSFCTQENVQRYPEIRFYPQKSS-------KAYQYHS 636
Query: 212 VGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKVPVSDLAGKTILLY 271
+ L + V + ++
Sbjct: 637 YNGWNRDAYSLRSWGL-----GFLPQASIDLTPQTFNEKVLQGK----------THWVVD 681
Query: 272 FSAHWCPPCRAFLPKLIDAYKKIKER 297
F A W P + F P+ + IK +
Sbjct: 682 FYAPWSGPSQNFAPEFELLARMIKGK 707
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 1e-04
Identities = 12/97 (12%), Positives = 28/97 (28%), Gaps = 24/97 (24%)
Query: 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW 324
G ++ F CP C +L K+ + + + + + +
Sbjct: 26 GIPTIIMFKTDTCPYCVEMQKELSYVSKEREGK---FNIYYARLEEE------------- 69
Query: 325 LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 361
+ L+ K+ + +P V + G
Sbjct: 70 --------KNIDLAYKYDANIVPTTVFLDKEGNKFYV 98
|
| >2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} Length = 172 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 2e-04
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 256 GKVPVSDLAGKTILLYFSAHWCPP-CRAFLPKLIDAYKKI-KERNESLEVVFISSD--RD 311
G V +S K +LL+F CP C L L AY+K+ + E ++V+F+S D RD
Sbjct: 26 GPVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERD 85
Query: 312 --------QTSFDEFFKGM 322
+F F G+
Sbjct: 86 PPEVADRYAKAFHPSFLGL 104
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 3e-04
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 25/89 (28%)
Query: 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 323
K I+LYF W PC+A ++ I + V F+S D D+ S
Sbjct: 20 GDKLIVLYFHTSWAEPCKALKQV----FEAISNEPSNSNVSFLSIDADENS--------- 66
Query: 324 WLALPFGDARKASLSRKFKVSGIPMLVAI 352
+S F++S +P + I
Sbjct: 67 ------------EISELFEISAVPYFIII 83
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 3e-04
Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 21/97 (21%)
Query: 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW 324
K + + WC PC+ + N + + ++ +
Sbjct: 27 DKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGV---------- 76
Query: 325 LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 361
L +K+ V P L+ I SG + +
Sbjct: 77 -----------ELRKKYGVHAYPTLLFINSSGEVVYR 102
|
| >1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A Length = 174 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 4e-04
Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 11/101 (10%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCP-PCRAFLPKLIDAYKKIKERNESLEVVFISSD--R 310
+G V + L G+ L F C C + D KK+K N + ++ S D
Sbjct: 22 DGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPEN 81
Query: 311 D--------QTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343
D ++ F +L + + FK
Sbjct: 82 DKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKA 122
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164 | Back alignment and structure |
|---|
Score = 39.7 bits (92), Expect = 5e-04
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 23/97 (23%)
Query: 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW 324
G +++ WC C+A PK +I E + V ++ + ++ DE F
Sbjct: 46 GLPLMVIIHKSWCGACKALKPK-FAESTEISELSH--NFVMVNLEDEEEPKDEDFSP--- 99
Query: 325 LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 361
IP ++ + PSG+ +
Sbjct: 100 -----------------DGGYIPRILFLDPSGKVHPE 119
|
| >2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A Length = 164 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 5e-04
Identities = 22/85 (25%), Positives = 30/85 (35%), Gaps = 13/85 (15%)
Query: 251 VGKNGGKVPVSDLAGKTILLYFSAHWCPP-CRAFLPKLIDAYKKIKERNES--LEVVFIS 307
G + D G+ +L+YF CP C L K+I +I L +FIS
Sbjct: 9 TTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFIS 68
Query: 308 SD--RD--------QTSFDEFFKGM 322
D RD F G+
Sbjct: 69 IDPERDTKEAIANYVKEFSPKLVGL 93
|
| >2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} Length = 171 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 7e-04
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 21/111 (18%)
Query: 248 DFV-VGKNGGKVPVSDLAGKTILLYFSAHWCPP-CRAFLPKLIDAYKKIKERN--ESLEV 303
DF + G +D G+ +L+YF CP C L KL+ ++++ ++
Sbjct: 8 DFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQP 67
Query: 304 VFISSD--RD--------QTSFDEFFKGMPWLALPFGDARK-ASLSRKFKV 343
VFI+ D RD F G+ G ++ A S ++V
Sbjct: 68 VFITVDPERDDVEAMARYVQDFHPRLLGL------TGSTKQVAQASHSYRV 112
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 477 | |||
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 99.94 | |
| 3s9f_A | 165 | Tryparedoxin; thioredoxin fold, disulfide reductas | 99.89 | |
| 1i5g_A | 144 | Tryparedoxin II; electron transport; HET: TS5; 1.4 | 99.88 | |
| 2lrn_A | 152 | Thiol:disulfide interchange protein; structural ge | 99.88 | |
| 1i5g_A | 144 | Tryparedoxin II; electron transport; HET: TS5; 1.4 | 99.87 | |
| 3eur_A | 142 | Uncharacterized protein; PSI2,MCSG, conserved prot | 99.87 | |
| 1o8x_A | 146 | Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot | 99.87 | |
| 1o73_A | 144 | Tryparedoxin; electron transport, trypanosomatid, | 99.87 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 99.87 | |
| 3ewl_A | 142 | Uncharacterized conserved protein BF1870; alpha-be | 99.87 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 99.87 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 99.87 | |
| 4fo5_A | 143 | Thioredoxin-like protein; AHPC/TSA family protein, | 99.87 | |
| 3s9f_A | 165 | Tryparedoxin; thioredoxin fold, disulfide reductas | 99.87 | |
| 2f9s_A | 151 | Thiol-disulfide oxidoreductase RESA; thioredoxin-l | 99.86 | |
| 3fw2_A | 150 | Thiol-disulfide oxidoreductase; structural genomic | 99.86 | |
| 3drn_A | 161 | Peroxiredoxin, bacterioferritin comigratory prote | 99.86 | |
| 4fo5_A | 143 | Thioredoxin-like protein; AHPC/TSA family protein, | 99.86 | |
| 1o8x_A | 146 | Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot | 99.86 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 99.86 | |
| 3lor_A | 160 | Thiol-disulfide isomerase and thioredoxins; PSI, M | 99.86 | |
| 3gl3_A | 152 | Putative thiol:disulfide interchange protein DSBE; | 99.85 | |
| 3eur_A | 142 | Uncharacterized protein; PSI2,MCSG, conserved prot | 99.85 | |
| 1o73_A | 144 | Tryparedoxin; electron transport, trypanosomatid, | 99.85 | |
| 3hcz_A | 148 | Possible thiol-disulfide isomerase; APC61559.2, cy | 99.85 | |
| 3eyt_A | 158 | Uncharacterized protein SPOA0173; thioredoxin-like | 99.85 | |
| 2lrt_A | 152 | Uncharacterized protein; structural genomics, thio | 99.85 | |
| 3raz_A | 151 | Thioredoxin-related protein; structural genomics, | 99.85 | |
| 1nm3_A | 241 | Protein HI0572; hybrid, peroxiredoxin, glutaredoxi | 99.85 | |
| 3kcm_A | 154 | Thioredoxin family protein; SGX, thioredoxin prote | 99.84 | |
| 3ewl_A | 142 | Uncharacterized conserved protein BF1870; alpha-be | 99.84 | |
| 2lrt_A | 152 | Uncharacterized protein; structural genomics, thio | 99.84 | |
| 3or5_A | 165 | Thiol:disulfide interchange protein, thioredoxin p | 99.84 | |
| 3fkf_A | 148 | Thiol-disulfide oxidoreductase; structural genomic | 99.84 | |
| 3fw2_A | 150 | Thiol-disulfide oxidoreductase; structural genomic | 99.84 | |
| 3u5r_E | 218 | Uncharacterized protein; structural genomics, PSI- | 99.84 | |
| 2lja_A | 152 | Putative thiol-disulfide oxidoreductase; structura | 99.84 | |
| 3gkn_A | 163 | Bacterioferritin comigratory protein; BCP, PRX, at | 99.84 | |
| 4g2e_A | 157 | Peroxiredoxin; redox protein, structural genomics, | 99.83 | |
| 2l5o_A | 153 | Putative thioredoxin; structural genomics, unknown | 99.83 | |
| 2lrn_A | 152 | Thiol:disulfide interchange protein; structural ge | 99.83 | |
| 4evm_A | 138 | Thioredoxin family protein; structural genomics, n | 99.83 | |
| 3lwa_A | 183 | Secreted thiol-disulfide isomerase; thioredoxin, P | 99.82 | |
| 3kh7_A | 176 | Thiol:disulfide interchange protein DSBE; TRX-like | 99.82 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 99.82 | |
| 1zzo_A | 136 | RV1677; thioredoxin fold, structural genomics, PSI | 99.82 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 99.82 | |
| 3erw_A | 145 | Sporulation thiol-disulfide oxidoreductase A; thio | 99.82 | |
| 1lu4_A | 136 | Soluble secreted antigen MPT53; thioredoxin-like f | 99.82 | |
| 1jfu_A | 186 | Thiol:disulfide interchange protein TLPA; thioredo | 99.82 | |
| 3ha9_A | 165 | Uncharacterized thioredoxin-like protein; PSI, MCS | 99.82 | |
| 4gqc_A | 164 | Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f | 99.81 | |
| 2cvb_A | 188 | Probable thiol-disulfide isomerase/thioredoxin; re | 99.81 | |
| 3ixr_A | 179 | Bacterioferritin comigratory protein; alpha beta p | 99.81 | |
| 3fkf_A | 148 | Thiol-disulfide oxidoreductase; structural genomic | 99.81 | |
| 2ggt_A | 164 | SCO1 protein homolog, mitochondrial; copper chaper | 99.81 | |
| 2b5x_A | 148 | YKUV protein, TRXY; thioredoxin-like, oxidoreducta | 99.81 | |
| 3ia1_A | 154 | THIO-disulfide isomerase/thioredoxin; oxidoreducta | 99.81 | |
| 3hcz_A | 148 | Possible thiol-disulfide isomerase; APC61559.2, cy | 99.81 | |
| 2lus_A | 143 | Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci | 99.68 | |
| 3dwv_A | 187 | Glutathione peroxidase-like protein; alpha beta, 3 | 99.8 | |
| 1xvw_A | 160 | Hypothetical protein RV2238C/MT2298; thioredoxin f | 99.8 | |
| 3drn_A | 161 | Peroxiredoxin, bacterioferritin comigratory prote | 99.79 | |
| 1xzo_A | 174 | BSSCO, hypothetical protein YPMQ; thioredoxin-like | 99.79 | |
| 2rli_A | 171 | SCO2 protein homolog, mitochondrial; copper protei | 99.79 | |
| 2c0d_A | 221 | Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th | 99.79 | |
| 2h30_A | 164 | Thioredoxin, peptide methionine sulfoxide reductas | 99.79 | |
| 3hdc_A | 158 | Thioredoxin family protein; ATCC53774, DSM 7210, , | 99.79 | |
| 2h01_A | 192 | 2-Cys peroxiredoxin; thioredoxin peroxidase, struc | 99.79 | |
| 1we0_A | 187 | Alkyl hydroperoxide reductase C; peroxiredoxin, AH | 99.79 | |
| 2ls5_A | 159 | Uncharacterized protein; structural genomics, unkn | 99.66 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 99.79 | |
| 3raz_A | 151 | Thioredoxin-related protein; structural genomics, | 99.79 | |
| 3gl3_A | 152 | Putative thiol:disulfide interchange protein DSBE; | 99.79 | |
| 3lor_A | 160 | Thiol-disulfide isomerase and thioredoxins; PSI, M | 99.78 | |
| 2ywi_A | 196 | Hypothetical conserved protein; uncharacterized co | 99.78 | |
| 2f9s_A | 151 | Thiol-disulfide oxidoreductase RESA; thioredoxin-l | 99.78 | |
| 1psq_A | 163 | Probable thiol peroxidase; structural genomics, NY | 99.78 | |
| 2jsy_A | 167 | Probable thiol peroxidase; solution structure, ant | 99.78 | |
| 3cmi_A | 171 | Peroxiredoxin HYR1; thioredoxin-like fold, oxidore | 99.78 | |
| 2lja_A | 152 | Putative thiol-disulfide oxidoreductase; structura | 99.78 | |
| 1n8j_A | 186 | AHPC, alkyl hydroperoxide reductase C22 protein; p | 99.78 | |
| 2vup_A | 190 | Glutathione peroxidase-like protein; oxidoreductas | 99.78 | |
| 2p5q_A | 170 | Glutathione peroxidase 5; thioredoxin fold, oxidor | 99.78 | |
| 2f8a_A | 208 | Glutathione peroxidase 1; thioredoxin fold, struct | 99.78 | |
| 2hyx_A | 352 | Protein DIPZ; thioredoxin fold, jelly-roll, struct | 99.78 | |
| 1uul_A | 202 | Tryparedoxin peroxidase homologue; peroxiredoxin, | 99.78 | |
| 2i81_A | 213 | 2-Cys peroxiredoxin; structural genomics consortiu | 99.78 | |
| 3eyt_A | 158 | Uncharacterized protein SPOA0173; thioredoxin-like | 99.78 | |
| 3ztl_A | 222 | Thioredoxin peroxidase; oxidoreductase, reductase, | 99.78 | |
| 1zof_A | 198 | Alkyl hydroperoxide-reductase; decamer, toroide-sh | 99.78 | |
| 2bmx_A | 195 | Alkyl hydroperoxidase C; peroxiredoxin, antioxidan | 99.78 | |
| 4g2e_A | 157 | Peroxiredoxin; redox protein, structural genomics, | 99.78 | |
| 3kij_A | 180 | Probable glutathione peroxidase 8; human PDI-perox | 99.77 | |
| 1qmv_A | 197 | Human thioredoxin peroxidase-B; peroxiredoxin, sul | 99.77 | |
| 2p31_A | 181 | CL683, glutathione peroxidase 7; thioredoxin fold, | 99.77 | |
| 2a4v_A | 159 | Peroxiredoxin DOT5; yeast nuclear thiol peroxidase | 99.77 | |
| 2v1m_A | 169 | Glutathione peroxidase; selenium, selenocysteine, | 99.77 | |
| 2lus_A | 143 | Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci | 99.64 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 99.77 | |
| 3me7_A | 170 | Putative uncharacterized protein; electron transfe | 99.77 | |
| 2pn8_A | 211 | Peroxiredoxin-4; thioredoxin, oxidoreductase, stru | 99.77 | |
| 2i3y_A | 215 | Epididymal secretory glutathione peroxidase; thior | 99.77 | |
| 3u5r_E | 218 | Uncharacterized protein; structural genomics, PSI- | 99.77 | |
| 1kng_A | 156 | Thiol:disulfide interchange protein CYCY; thioredo | 99.77 | |
| 3p7x_A | 166 | Probable thiol peroxidase; thioredoxin fold, oxido | 99.77 | |
| 3kcm_A | 154 | Thioredoxin family protein; SGX, thioredoxin prote | 99.77 | |
| 3gkn_A | 163 | Bacterioferritin comigratory protein; BCP, PRX, at | 99.76 | |
| 2yzh_A | 171 | Probable thiol peroxidase; redox protein, antioxid | 99.76 | |
| 1tp9_A | 162 | Peroxiredoxin, PRX D (type II); oligomer, thioredo | 99.76 | |
| 2gs3_A | 185 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.76 | |
| 1q98_A | 165 | Thiol peroxidase, TPX; structural genomics, NYSGXR | 99.76 | |
| 2obi_A | 183 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.76 | |
| 2b7k_A | 200 | SCO1 protein; metallochaperone, cytochrome C oxida | 99.76 | |
| 2b1k_A | 168 | Thiol:disulfide interchange protein DSBE; C-termin | 99.76 | |
| 1zye_A | 220 | Thioredoxin-dependent peroxide reductase; catenane | 99.76 | |
| 3uma_A | 184 | Hypothetical peroxiredoxin protein; nysgrc, PSI bi | 99.75 | |
| 1nm3_A | 241 | Protein HI0572; hybrid, peroxiredoxin, glutaredoxi | 99.75 | |
| 3kh7_A | 176 | Thiol:disulfide interchange protein DSBE; TRX-like | 99.75 | |
| 3ha9_A | 165 | Uncharacterized thioredoxin-like protein; PSI, MCS | 99.75 | |
| 1xvq_A | 175 | Thiol peroxidase; thioredoxin fold, structural gen | 99.75 | |
| 3dwv_A | 187 | Glutathione peroxidase-like protein; alpha beta, 3 | 99.75 | |
| 1jfu_A | 186 | Thiol:disulfide interchange protein TLPA; thioredo | 99.75 | |
| 2l5o_A | 153 | Putative thioredoxin; structural genomics, unknown | 99.75 | |
| 3qpm_A | 240 | Peroxiredoxin; oxidoreductase, thioredoxin fold, p | 99.75 | |
| 3zrd_A | 200 | Thiol peroxidase; oxidoreductase, 2Cys peroxiredox | 99.75 | |
| 2wfc_A | 167 | Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan | 99.75 | |
| 3erw_A | 145 | Sporulation thiol-disulfide oxidoreductase A; thio | 99.75 | |
| 3or5_A | 165 | Thiol:disulfide interchange protein, thioredoxin p | 99.74 | |
| 3lwa_A | 183 | Secreted thiol-disulfide isomerase; thioredoxin, P | 99.74 | |
| 2ggt_A | 164 | SCO1 protein homolog, mitochondrial; copper chaper | 99.74 | |
| 1xzo_A | 174 | BSSCO, hypothetical protein YPMQ; thioredoxin-like | 99.74 | |
| 4hde_A | 170 | SCO1/SENC family lipoprotein; structural genomics, | 99.74 | |
| 2r37_A | 207 | Glutathione peroxidase 3; plasma, structural genom | 99.74 | |
| 2k6v_A | 172 | Putative cytochrome C oxidase assembly protein; th | 99.74 | |
| 3hdc_A | 158 | Thioredoxin family protein; ATCC53774, DSM 7210, , | 99.74 | |
| 3mng_A | 173 | Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, | 99.74 | |
| 4evm_A | 138 | Thioredoxin family protein; structural genomics, n | 99.74 | |
| 2pwj_A | 171 | Mitochondrial peroxiredoxin; alpha and beta protei | 99.74 | |
| 2rli_A | 171 | SCO2 protein homolog, mitochondrial; copper protei | 99.74 | |
| 2c0d_A | 221 | Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th | 99.73 | |
| 3me7_A | 170 | Putative uncharacterized protein; electron transfe | 99.73 | |
| 3kij_A | 180 | Probable glutathione peroxidase 8; human PDI-perox | 99.73 | |
| 4gqc_A | 164 | Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f | 99.73 | |
| 1xvw_A | 160 | Hypothetical protein RV2238C/MT2298; thioredoxin f | 99.73 | |
| 1we0_A | 187 | Alkyl hydroperoxide reductase C; peroxiredoxin, AH | 99.73 | |
| 2cvb_A | 188 | Probable thiol-disulfide isomerase/thioredoxin; re | 99.73 | |
| 4hde_A | 170 | SCO1/SENC family lipoprotein; structural genomics, | 99.73 | |
| 2h01_A | 192 | 2-Cys peroxiredoxin; thioredoxin peroxidase, struc | 99.73 | |
| 2b7k_A | 200 | SCO1 protein; metallochaperone, cytochrome C oxida | 99.73 | |
| 3ixr_A | 179 | Bacterioferritin comigratory protein; alpha beta p | 99.72 | |
| 1zzo_A | 136 | RV1677; thioredoxin fold, structural genomics, PSI | 99.72 | |
| 1q98_A | 165 | Thiol peroxidase, TPX; structural genomics, NYSGXR | 99.72 | |
| 3ztl_A | 222 | Thioredoxin peroxidase; oxidoreductase, reductase, | 99.72 | |
| 2p5q_A | 170 | Glutathione peroxidase 5; thioredoxin fold, oxidor | 99.72 | |
| 1zof_A | 198 | Alkyl hydroperoxide-reductase; decamer, toroide-sh | 99.72 | |
| 3tjj_A | 254 | Peroxiredoxin-4; thioredoxin fold, sulfenylation, | 99.72 | |
| 2i81_A | 213 | 2-Cys peroxiredoxin; structural genomics consortiu | 99.72 | |
| 2bmx_A | 195 | Alkyl hydroperoxidase C; peroxiredoxin, antioxidan | 99.71 | |
| 2ls5_A | 159 | Uncharacterized protein; structural genomics, unkn | 99.55 | |
| 2v1m_A | 169 | Glutathione peroxidase; selenium, selenocysteine, | 99.71 | |
| 2p31_A | 181 | CL683, glutathione peroxidase 7; thioredoxin fold, | 99.71 | |
| 1lu4_A | 136 | Soluble secreted antigen MPT53; thioredoxin-like f | 99.71 | |
| 2ywi_A | 196 | Hypothetical conserved protein; uncharacterized co | 99.71 | |
| 2h30_A | 164 | Thioredoxin, peptide methionine sulfoxide reductas | 99.71 | |
| 1n8j_A | 186 | AHPC, alkyl hydroperoxide reductase C22 protein; p | 99.71 | |
| 2pn8_A | 211 | Peroxiredoxin-4; thioredoxin, oxidoreductase, stru | 99.71 | |
| 3zrd_A | 200 | Thiol peroxidase; oxidoreductase, 2Cys peroxiredox | 99.71 | |
| 2v2g_A | 233 | Peroxiredoxin 6; oxidoreductase, antioxidant enzym | 99.71 | |
| 1prx_A | 224 | HORF6; peroxiredoxin, hydrogen peroxide, redox reg | 99.71 | |
| 2f8a_A | 208 | Glutathione peroxidase 1; thioredoxin fold, struct | 99.71 | |
| 2obi_A | 183 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.71 | |
| 3cmi_A | 171 | Peroxiredoxin HYR1; thioredoxin-like fold, oxidore | 99.71 | |
| 3ia1_A | 154 | THIO-disulfide isomerase/thioredoxin; oxidoreducta | 99.71 | |
| 1uul_A | 202 | Tryparedoxin peroxidase homologue; peroxiredoxin, | 99.7 | |
| 1psq_A | 163 | Probable thiol peroxidase; structural genomics, NY | 99.7 | |
| 1qmv_A | 197 | Human thioredoxin peroxidase-B; peroxiredoxin, sul | 99.7 | |
| 1zye_A | 220 | Thioredoxin-dependent peroxide reductase; catenane | 99.7 | |
| 2b5x_A | 148 | YKUV protein, TRXY; thioredoxin-like, oxidoreducta | 99.7 | |
| 3qpm_A | 240 | Peroxiredoxin; oxidoreductase, thioredoxin fold, p | 99.7 | |
| 2gs3_A | 185 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.7 | |
| 2jsy_A | 167 | Probable thiol peroxidase; solution structure, ant | 99.7 | |
| 1tp9_A | 162 | Peroxiredoxin, PRX D (type II); oligomer, thioredo | 99.69 | |
| 2wfc_A | 167 | Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan | 99.69 | |
| 2vup_A | 190 | Glutathione peroxidase-like protein; oxidoreductas | 99.69 | |
| 3p7x_A | 166 | Probable thiol peroxidase; thioredoxin fold, oxido | 99.69 | |
| 2hyx_A | 352 | Protein DIPZ; thioredoxin fold, jelly-roll, struct | 99.69 | |
| 2k6v_A | 172 | Putative cytochrome C oxidase assembly protein; th | 99.69 | |
| 2r37_A | 207 | Glutathione peroxidase 3; plasma, structural genom | 99.69 | |
| 2i3y_A | 215 | Epididymal secretory glutathione peroxidase; thior | 99.68 | |
| 1xvq_A | 175 | Thiol peroxidase; thioredoxin fold, structural gen | 99.68 | |
| 1xcc_A | 220 | 1-Cys peroxiredoxin; unknown function, structural | 99.68 | |
| 2b1k_A | 168 | Thiol:disulfide interchange protein DSBE; C-termin | 99.68 | |
| 2yzh_A | 171 | Probable thiol peroxidase; redox protein, antioxid | 99.68 | |
| 3tjj_A | 254 | Peroxiredoxin-4; thioredoxin fold, sulfenylation, | 99.68 | |
| 2a4v_A | 159 | Peroxiredoxin DOT5; yeast nuclear thiol peroxidase | 99.67 | |
| 3a2v_A | 249 | Probable peroxiredoxin; thioredoxin peroxidase, hy | 99.67 | |
| 3keb_A | 224 | Probable thiol peroxidase; structural genomics, AP | 99.67 | |
| 3mng_A | 173 | Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, | 99.66 | |
| 3sbc_A | 216 | Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c | 99.66 | |
| 3zzx_A | 105 | Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va | 99.65 | |
| 3uma_A | 184 | Hypothetical peroxiredoxin protein; nysgrc, PSI bi | 99.65 | |
| 1kng_A | 156 | Thiol:disulfide interchange protein CYCY; thioredo | 99.65 | |
| 4eo3_A | 322 | Bacterioferritin comigratory protein/NADH dehydro; | 99.64 | |
| 1v5n_A | 89 | PDI-like hypothetical protein AT1G60420; DC1 domai | 99.64 | |
| 2pwj_A | 171 | Mitochondrial peroxiredoxin; alpha and beta protei | 99.63 | |
| 2v2g_A | 233 | Peroxiredoxin 6; oxidoreductase, antioxidant enzym | 99.62 | |
| 3tue_A | 219 | Tryparedoxin peroxidase; thioredoxin fold, peroxir | 99.61 | |
| 2l57_A | 126 | Uncharacterized protein; structural genomics, unkn | 99.61 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 99.61 | |
| 3hxs_A | 141 | Thioredoxin, TRXP; electron transport; 2.00A {Bact | 99.61 | |
| 1prx_A | 224 | HORF6; peroxiredoxin, hydrogen peroxide, redox reg | 99.61 | |
| 1xcc_A | 220 | 1-Cys peroxiredoxin; unknown function, structural | 99.6 | |
| 3q6o_A | 244 | Sulfhydryl oxidase 1; protein disulfide isomerase, | 99.6 | |
| 3ul3_B | 128 | Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; | 99.59 | |
| 3keb_A | 224 | Probable thiol peroxidase; structural genomics, AP | 99.58 | |
| 3sbc_A | 216 | Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c | 99.58 | |
| 2av4_A | 160 | Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI | 99.57 | |
| 3a2v_A | 249 | Probable peroxiredoxin; thioredoxin peroxidase, hy | 99.57 | |
| 2fwh_A | 134 | Thiol:disulfide interchange protein DSBD; thioredo | 99.56 | |
| 3fk8_A | 133 | Disulphide isomerase; APC61824.1, xylella fastidio | 99.55 | |
| 3p2a_A | 148 | Thioredoxin 2, putative thioredoxin-like protein; | 99.55 | |
| 2ju5_A | 154 | Thioredoxin disulfide isomerase; protein, oxidored | 99.54 | |
| 3f3q_A | 109 | Thioredoxin-1; His TAG, electron transport, cytopl | 99.54 | |
| 2qsi_A | 137 | Putative hydrogenase expression/formation protein; | 99.54 | |
| 3tco_A | 109 | Thioredoxin (TRXA-1); disulfide oxidoreductase, ox | 99.53 | |
| 2qgv_A | 140 | Hydrogenase-1 operon protein HYAE; alpha-beta prot | 99.53 | |
| 3tue_A | 219 | Tryparedoxin peroxidase; thioredoxin fold, peroxir | 99.53 | |
| 2voc_A | 112 | Thioredoxin; electron transport, homodimer, disulf | 99.52 | |
| 3t58_A | 519 | Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2. | 99.52 | |
| 2l5l_A | 136 | Thioredoxin; structural genomics, electron transpo | 99.52 | |
| 2kuc_A | 130 | Putative disulphide-isomerase; structural genomics | 99.52 | |
| 3qfa_C | 116 | Thioredoxin; protein-protein complex, rossmann fol | 99.52 | |
| 2trx_A | 108 | Thioredoxin; electron transport; 1.68A {Escherichi | 99.51 | |
| 2o8v_B | 128 | Thioredoxin 1; disulfide crosslinked complex, oxid | 99.5 | |
| 2dj1_A | 140 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.5 | |
| 3d22_A | 139 | TRXH4, thioredoxin H-type; electron transport, cyt | 99.5 | |
| 1nsw_A | 105 | Thioredoxin, TRX; thermostability, electron transp | 99.5 | |
| 1t00_A | 112 | Thioredoxin, TRX; redox regulation, multifunction | 99.48 | |
| 3d6i_A | 112 | Monothiol glutaredoxin-3; thioredoxin-like, electr | 99.48 | |
| 4f82_A | 176 | Thioredoxin reductase; structural genomics, niaid, | 99.48 | |
| 3gix_A | 149 | Thioredoxin-like protein 4B; PRE-mRNA splicing, TX | 99.48 | |
| 3h79_A | 127 | Thioredoxin-like protein; thioredoxin fold, cataly | 99.48 | |
| 3die_A | 106 | Thioredoxin, TRX; electron transport, SWAP domain, | 99.48 | |
| 2pu9_C | 111 | TRX-F, thioredoxin F-type, chloroplast; protein-pr | 99.48 | |
| 1gh2_A | 107 | Thioredoxin-like protein; redox-active center, ele | 99.47 | |
| 3ph9_A | 151 | Anterior gradient protein 3 homolog; thioredoxin f | 99.47 | |
| 1xfl_A | 124 | Thioredoxin H1; AT3G51030, structural genomics, pr | 99.47 | |
| 4euy_A | 105 | Uncharacterized protein; structural genomics, PSI- | 99.47 | |
| 1dby_A | 107 | Chloroplast thioredoxin M CH2; thioredoxin CH2, ch | 99.47 | |
| 3f9u_A | 172 | Putative exported cytochrome C biogenesis-related; | 99.47 | |
| 1ep7_A | 112 | Thioredoxin CH1, H-type; electron transport; 2.10A | 99.47 | |
| 2dml_A | 130 | Protein disulfide-isomerase A6; thioredoxin domain | 99.47 | |
| 2ppt_A | 155 | Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc | 99.46 | |
| 2i4a_A | 107 | Thioredoxin; acidophIle, disulfide exchange, oxido | 99.46 | |
| 1x5d_A | 133 | Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC | 99.46 | |
| 3aps_A | 122 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.46 | |
| 1w4v_A | 119 | Thioredoxin, mitochondrial; antioxidant enzyme, mi | 99.46 | |
| 3cxg_A | 133 | Putative thioredoxin; malaria, structural GEN oxid | 99.46 | |
| 1thx_A | 115 | Thioredoxin, thioredoxin 2; oxido-reductase, elect | 99.46 | |
| 3gnj_A | 111 | Thioredoxin domain protein; APC92103, STR genomics | 99.45 | |
| 1z6n_A | 167 | Hypothetical protein PA1234; alpha-beta-alpha sand | 99.45 | |
| 3m9j_A | 105 | Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} | 99.45 | |
| 1qgv_A | 142 | Spliceosomal protein U5-15KD; snRNP, thioredoxin, | 99.45 | |
| 3hz4_A | 140 | Thioredoxin; NYSGXRC, PSI-II, reduced form, protei | 99.45 | |
| 1sen_A | 164 | Thioredoxin-like protein P19; endoplasmic reticulu | 99.44 | |
| 1xwb_A | 106 | Thioredoxin; dimerization, redox regulation, THI X | 99.44 | |
| 2wz9_A | 153 | Glutaredoxin-3; protein binding; 1.55A {Homo sapie | 99.44 | |
| 3uvt_A | 111 | Thioredoxin domain-containing protein 5; thioredox | 99.44 | |
| 1r26_A | 125 | Thioredoxin; redox-active disulfide, electron tran | 99.43 | |
| 1fb6_A | 105 | Thioredoxin M; electron transport; 2.10A {Spinacia | 99.43 | |
| 3hxs_A | 141 | Thioredoxin, TRXP; electron transport; 2.00A {Bact | 99.43 | |
| 2xc2_A | 117 | Thioredoxinn; oxidoreductase, protein disulfide re | 99.43 | |
| 2e0q_A | 104 | Thioredoxin; electron transport; 1.49A {Sulfolobus | 99.43 | |
| 2f51_A | 118 | Thioredoxin; electron transport; 1.90A {Trichomona | 99.42 | |
| 1x5e_A | 126 | Thioredoxin domain containing protein 1; TMX, TXND | 99.42 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.42 | |
| 1faa_A | 124 | Thioredoxin F; electron transport; 1.85A {Spinacia | 99.41 | |
| 2vim_A | 104 | Thioredoxin, TRX; thioredoxin fold, oxidoreductase | 99.41 | |
| 2vlu_A | 122 | Thioredoxin, thioredoxin H isoform 2.; oxidoreduct | 99.41 | |
| 2yzu_A | 109 | Thioredoxin; redox protein, electron transport, st | 99.41 | |
| 2j23_A | 121 | Thioredoxin; immune protein, autoreactivity, cross | 99.41 | |
| 2lst_A | 130 | Thioredoxin; structural genomics, NEW YORK structu | 99.11 | |
| 3zzx_A | 105 | Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va | 99.4 | |
| 4eo3_A | 322 | Bacterioferritin comigratory protein/NADH dehydro; | 99.4 | |
| 1v98_A | 140 | Thioredoxin; oxidoreductase, structural genomics, | 99.4 | |
| 2oe3_A | 114 | Thioredoxin-3; electron transport, alpha/beta sand | 99.4 | |
| 1ti3_A | 113 | Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul | 99.4 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 99.39 | |
| 2dj3_A | 133 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.39 | |
| 1zma_A | 118 | Bacterocin transport accessory protein; alpha-beta | 99.39 | |
| 3ul3_B | 128 | Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; | 99.39 | |
| 2vm1_A | 118 | Thioredoxin, thioredoxin H isoform 1.; oxidoreduct | 99.39 | |
| 1syr_A | 112 | Thioredoxin; SGPP, structural genomics, PSI, prote | 99.39 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 99.39 | |
| 2i1u_A | 121 | Thioredoxin, TRX, MPT46; redox protein, electron t | 99.38 | |
| 3evi_A | 118 | Phosducin-like protein 2; alpha beta, 3-layer(ABA) | 99.38 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.38 | |
| 2djj_A | 121 | PDI, protein disulfide-isomerase; thioredoxin fold | 99.37 | |
| 2dj0_A | 137 | Thioredoxin-related transmembrane protein 2; AVLA2 | 99.37 | |
| 2l6c_A | 110 | Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu | 99.37 | |
| 2xhf_A | 171 | Peroxiredoxin 5; oxidoreductase, antioxidant enzym | 99.36 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 99.36 | |
| 2fwh_A | 134 | Thiol:disulfide interchange protein DSBD; thioredo | 99.36 | |
| 2l57_A | 126 | Uncharacterized protein; structural genomics, unkn | 99.36 | |
| 1oaz_A | 123 | Thioredoxin 1; immune system, antibody/complex, an | 99.35 | |
| 3ira_A | 173 | Conserved protein; methanosarcina mazei,structural | 99.35 | |
| 1xiy_A | 182 | Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin | 99.35 | |
| 1z6n_A | 167 | Hypothetical protein PA1234; alpha-beta-alpha sand | 99.33 | |
| 3emx_A | 135 | Thioredoxin; structural genomics, oxidoreductase, | 99.33 | |
| 1sji_A | 350 | Calsequestrin 2, calsequestrin, cardiac muscle iso | 99.33 | |
| 4f82_A | 176 | Thioredoxin reductase; structural genomics, niaid, | 99.33 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 99.33 | |
| 1mek_A | 120 | Protein disulfide isomerase; electron transport, r | 99.33 | |
| 2ju5_A | 154 | Thioredoxin disulfide isomerase; protein, oxidored | 99.32 | |
| 3q6o_A | 244 | Sulfhydryl oxidase 1; protein disulfide isomerase, | 99.31 | |
| 2dbc_A | 135 | PDCL2, unnamed protein product; phosducin-like pro | 99.3 | |
| 3ed3_A | 298 | Protein disulfide-isomerase MPD1; thioredoxin-like | 99.3 | |
| 3fk8_A | 133 | Disulphide isomerase; APC61824.1, xylella fastidio | 99.28 | |
| 2es7_A | 142 | Q8ZP25_salty, putative thiol-disulfide isomerase a | 99.27 | |
| 1fo5_A | 85 | Thioredoxin; disulfide oxidoreductase, structural | 99.27 | |
| 3t58_A | 519 | Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2. | 99.26 | |
| 1nho_A | 85 | Probable thioredoxin; beta sheet, alpha helix, oxi | 99.26 | |
| 1wou_A | 123 | Thioredoxin -related protein, 14 kDa; electron tra | 99.26 | |
| 3f9u_A | 172 | Putative exported cytochrome C biogenesis-related; | 99.26 | |
| 3ed3_A | 298 | Protein disulfide-isomerase MPD1; thioredoxin-like | 99.25 | |
| 2l5l_A | 136 | Thioredoxin; structural genomics, electron transpo | 99.25 | |
| 3f3q_A | 109 | Thioredoxin-1; His TAG, electron transport, cytopl | 99.24 | |
| 3dml_A | 116 | Putative uncharacterized protein; thioredoxin, oxi | 99.24 | |
| 2voc_A | 112 | Thioredoxin; electron transport, homodimer, disulf | 99.23 | |
| 3gix_A | 149 | Thioredoxin-like protein 4B; PRE-mRNA splicing, TX | 99.23 | |
| 3us3_A | 367 | Calsequestrin-1; calcium-binding protein; 1.74A {O | 99.22 | |
| 1wmj_A | 130 | Thioredoxin H-type; structural genomics, program f | 99.22 | |
| 2yj7_A | 106 | LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti | 98.85 | |
| 3ga4_A | 178 | Dolichyl-diphosphooligosaccharide-protein glycosyl | 99.21 | |
| 2av4_A | 160 | Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI | 99.2 | |
| 1qgv_A | 142 | Spliceosomal protein U5-15KD; snRNP, thioredoxin, | 99.2 | |
| 3p2a_A | 148 | Thioredoxin 2, putative thioredoxin-like protein; | 99.2 | |
| 3qfa_C | 116 | Thioredoxin; protein-protein complex, rossmann fol | 99.2 | |
| 3kp8_A | 106 | Vkorc1/thioredoxin domain protein; blood coagulati | 99.19 | |
| 2r2j_A | 382 | Thioredoxin domain-containing protein 4; CRFS moti | 99.19 | |
| 2dj1_A | 140 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.19 | |
| 2kuc_A | 130 | Putative disulphide-isomerase; structural genomics | 99.19 | |
| 2r2j_A | 382 | Thioredoxin domain-containing protein 4; CRFS moti | 99.18 | |
| 1a0r_P | 245 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 99.18 | |
| 3d6i_A | 112 | Monothiol glutaredoxin-3; thioredoxin-like, electr | 99.18 | |
| 1nsw_A | 105 | Thioredoxin, TRX; thermostability, electron transp | 99.18 | |
| 3die_A | 106 | Thioredoxin, TRX; electron transport, SWAP domain, | 99.18 | |
| 2trx_A | 108 | Thioredoxin; electron transport; 1.68A {Escherichi | 99.18 | |
| 3tco_A | 109 | Thioredoxin (TRXA-1); disulfide oxidoreductase, ox | 99.17 | |
| 4euy_A | 105 | Uncharacterized protein; structural genomics, PSI- | 99.17 | |
| 2dml_A | 130 | Protein disulfide-isomerase A6; thioredoxin domain | 99.17 | |
| 1xfl_A | 124 | Thioredoxin H1; AT3G51030, structural genomics, pr | 99.16 | |
| 2pu9_C | 111 | TRX-F, thioredoxin F-type, chloroplast; protein-pr | 99.16 | |
| 3h79_A | 127 | Thioredoxin-like protein; thioredoxin fold, cataly | 99.16 | |
| 3iv4_A | 112 | Putative oxidoreductase; APC23140, meticillin-resi | 99.16 | |
| 1t00_A | 112 | Thioredoxin, TRX; redox regulation, multifunction | 99.16 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 99.15 | |
| 1x5d_A | 133 | Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC | 99.15 | |
| 1dby_A | 107 | Chloroplast thioredoxin M CH2; thioredoxin CH2, ch | 99.15 | |
| 2xhf_A | 171 | Peroxiredoxin 5; oxidoreductase, antioxidant enzym | 99.15 | |
| 2o8v_B | 128 | Thioredoxin 1; disulfide crosslinked complex, oxid | 99.14 | |
| 1w4v_A | 119 | Thioredoxin, mitochondrial; antioxidant enzyme, mi | 99.14 | |
| 2wz9_A | 153 | Glutaredoxin-3; protein binding; 1.55A {Homo sapie | 99.13 | |
| 2i4a_A | 107 | Thioredoxin; acidophIle, disulfide exchange, oxido | 99.13 | |
| 3cxg_A | 133 | Putative thioredoxin; malaria, structural GEN oxid | 99.13 | |
| 2dj0_A | 137 | Thioredoxin-related transmembrane protein 2; AVLA2 | 99.13 | |
| 2dj3_A | 133 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.13 | |
| 1gh2_A | 107 | Thioredoxin-like protein; redox-active center, ele | 99.13 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.12 | |
| 2f51_A | 118 | Thioredoxin; electron transport; 1.90A {Trichomona | 99.12 | |
| 2qsi_A | 137 | Putative hydrogenase expression/formation protein; | 99.12 | |
| 1ilo_A | 77 | Conserved hypothetical protein MTH895; beta-alpha- | 99.12 | |
| 3gnj_A | 111 | Thioredoxin domain protein; APC92103, STR genomics | 99.12 | |
| 1thx_A | 115 | Thioredoxin, thioredoxin 2; oxido-reductase, elect | 99.12 | |
| 2ppt_A | 155 | Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc | 99.12 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 99.11 | |
| 2oe3_A | 114 | Thioredoxin-3; electron transport, alpha/beta sand | 99.11 | |
| 2lst_A | 130 | Thioredoxin; structural genomics, NEW YORK structu | 98.71 | |
| 2trc_P | 217 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 99.11 | |
| 1x5e_A | 126 | Thioredoxin domain containing protein 1; TMX, TXND | 99.1 | |
| 1ep7_A | 112 | Thioredoxin CH1, H-type; electron transport; 2.10A | 99.09 | |
| 3aps_A | 122 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.09 | |
| 3m9j_A | 105 | Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} | 99.09 | |
| 3hz4_A | 140 | Thioredoxin; NYSGXRC, PSI-II, reduced form, protei | 99.09 | |
| 3qcp_A | 470 | QSOX from trypanosoma brucei (tbqsox); ERV fold, t | 99.09 | |
| 3d22_A | 139 | TRXH4, thioredoxin H-type; electron transport, cyt | 99.09 | |
| 3uvt_A | 111 | Thioredoxin domain-containing protein 5; thioredox | 99.09 | |
| 1xwb_A | 106 | Thioredoxin; dimerization, redox regulation, THI X | 99.09 | |
| 1xiy_A | 182 | Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin | 99.09 | |
| 2yzu_A | 109 | Thioredoxin; redox protein, electron transport, st | 99.07 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 99.07 | |
| 1fb6_A | 105 | Thioredoxin M; electron transport; 2.10A {Spinacia | 99.07 | |
| 1r26_A | 125 | Thioredoxin; redox-active disulfide, electron tran | 99.06 | |
| 3ph9_A | 151 | Anterior gradient protein 3 homolog; thioredoxin f | 99.06 | |
| 1sji_A | 350 | Calsequestrin 2, calsequestrin, cardiac muscle iso | 99.06 | |
| 2vlu_A | 122 | Thioredoxin, thioredoxin H isoform 2.; oxidoreduct | 99.06 | |
| 1zma_A | 118 | Bacterocin transport accessory protein; alpha-beta | 99.05 | |
| 2vim_A | 104 | Thioredoxin, TRX; thioredoxin fold, oxidoreductase | 99.05 | |
| 2xc2_A | 117 | Thioredoxinn; oxidoreductase, protein disulfide re | 99.04 | |
| 2j23_A | 121 | Thioredoxin; immune protein, autoreactivity, cross | 99.04 | |
| 2l6c_A | 110 | Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu | 99.04 | |
| 1ti3_A | 113 | Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul | 99.04 | |
| 1faa_A | 124 | Thioredoxin F; electron transport; 1.85A {Spinacia | 99.03 | |
| 1mek_A | 120 | Protein disulfide isomerase; electron transport, r | 99.03 | |
| 1sen_A | 164 | Thioredoxin-like protein P19; endoplasmic reticulu | 99.03 | |
| 2i1u_A | 121 | Thioredoxin, TRX, MPT46; redox protein, electron t | 99.03 | |
| 2e0q_A | 104 | Thioredoxin; electron transport; 1.49A {Sulfolobus | 99.02 | |
| 1syr_A | 112 | Thioredoxin; SGPP, structural genomics, PSI, prote | 99.02 | |
| 1v98_A | 140 | Thioredoxin; oxidoreductase, structural genomics, | 99.01 | |
| 1wou_A | 123 | Thioredoxin -related protein, 14 kDa; electron tra | 99.01 | |
| 1oaz_A | 123 | Thioredoxin 1; immune system, antibody/complex, an | 99.0 | |
| 3ira_A | 173 | Conserved protein; methanosarcina mazei,structural | 99.0 | |
| 2dlx_A | 153 | UBX domain-containing protein 7; UAS domain, prote | 99.0 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 99.0 | |
| 3emx_A | 135 | Thioredoxin; structural genomics, oxidoreductase, | 99.0 | |
| 2vm1_A | 118 | Thioredoxin, thioredoxin H isoform 1.; oxidoreduct | 99.0 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.0 | |
| 3us3_A | 367 | Calsequestrin-1; calcium-binding protein; 1.74A {O | 98.99 | |
| 2djj_A | 121 | PDI, protein disulfide-isomerase; thioredoxin fold | 98.98 | |
| 2qgv_A | 140 | Hydrogenase-1 operon protein HYAE; alpha-beta prot | 98.98 | |
| 2dbc_A | 135 | PDCL2, unnamed protein product; phosducin-like pro | 98.96 | |
| 1fo5_A | 85 | Thioredoxin; disulfide oxidoreductase, structural | 98.95 | |
| 1nho_A | 85 | Probable thioredoxin; beta sheet, alpha helix, oxi | 98.93 | |
| 2fgx_A | 107 | Putative thioredoxin; NET3, NESG, GFT-glutaredoxin | 98.86 | |
| 3ga4_A | 178 | Dolichyl-diphosphooligosaccharide-protein glycosyl | 98.85 | |
| 1ilo_A | 77 | Conserved hypothetical protein MTH895; beta-alpha- | 98.84 | |
| 3kp8_A | 106 | Vkorc1/thioredoxin domain protein; blood coagulati | 98.84 | |
| 1wmj_A | 130 | Thioredoxin H-type; structural genomics, program f | 98.84 | |
| 2yj7_A | 106 | LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti | 98.31 | |
| 2djk_A | 133 | PDI, protein disulfide-isomerase; thioredoxin fold | 98.81 | |
| 3evi_A | 118 | Phosducin-like protein 2; alpha beta, 3-layer(ABA) | 98.8 | |
| 1eej_A | 216 | Thiol:disulfide interchange protein; oxidoreductas | 98.8 | |
| 3qcp_A | 470 | QSOX from trypanosoma brucei (tbqsox); ERV fold, t | 98.79 | |
| 1a0r_P | 245 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 98.79 | |
| 3iv4_A | 112 | Putative oxidoreductase; APC23140, meticillin-resi | 98.78 | |
| 1ttz_A | 87 | Conserved hypothetical protein; structural genomic | 98.77 | |
| 2c0g_A | 248 | ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, | 98.75 | |
| 3gyk_A | 175 | 27KDA outer membrane protein; APC61738.2, siliciba | 98.74 | |
| 2es7_A | 142 | Q8ZP25_salty, putative thiol-disulfide isomerase a | 98.73 | |
| 3hd5_A | 195 | Thiol:disulfide interchange protein DSBA; protein | 98.71 | |
| 2k8s_A | 80 | Thioredoxin; dimer, structural genomics, PSI-2, pr | 98.71 | |
| 2trc_P | 217 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 98.66 | |
| 3dml_A | 116 | Putative uncharacterized protein; thioredoxin, oxi | 98.63 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 98.61 | |
| 2qc7_A | 240 | ERP31, ERP28, endoplasmic reticulum protein ERP29; | 98.6 | |
| 2e7p_A | 116 | Glutaredoxin; thioredoxin fold, poplar, electron t | 98.57 | |
| 2dlx_A | 153 | UBX domain-containing protein 7; UAS domain, prote | 98.55 | |
| 3h93_A | 192 | Thiol:disulfide interchange protein DSBA; disulfid | 98.53 | |
| 2znm_A | 195 | Thiol:disulfide interchange protein DSBA; thioredo | 98.49 | |
| 1un2_A | 197 | DSBA, thiol-disulfide interchange protein; disulfi | 98.46 | |
| 1ego_A | 85 | Glutaredoxin; electron transport; NMR {Escherichia | 98.45 | |
| 2djk_A | 133 | PDI, protein disulfide-isomerase; thioredoxin fold | 98.44 | |
| 3kp9_A | 291 | Vkorc1/thioredoxin domain protein; warfarin, disul | 98.41 | |
| 1wjk_A | 100 | C330018D20RIK protein; glutaredoxin, thioredoxin f | 98.4 | |
| 4f9z_D | 227 | Endoplasmic reticulum resident protein 27; thiored | 98.39 | |
| 1eej_A | 216 | Thiol:disulfide interchange protein; oxidoreductas | 98.35 | |
| 1t3b_A | 211 | Thiol:disulfide interchange protein DSBC; oxidored | 98.34 | |
| 2e7p_A | 116 | Glutaredoxin; thioredoxin fold, poplar, electron t | 98.33 | |
| 2c0g_A | 248 | ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, | 98.31 | |
| 1v58_A | 241 | Thiol:disulfide interchange protein DSBG; reduced | 98.3 | |
| 3gyk_A | 175 | 27KDA outer membrane protein; APC61738.2, siliciba | 98.26 | |
| 2rem_A | 193 | Disulfide oxidoreductase; disulfide oxidoreductase | 98.25 | |
| 2k8s_A | 80 | Thioredoxin; dimer, structural genomics, PSI-2, pr | 98.23 | |
| 1ttz_A | 87 | Conserved hypothetical protein; structural genomic | 98.2 | |
| 3hd5_A | 195 | Thiol:disulfide interchange protein DSBA; protein | 98.14 | |
| 1z6m_A | 175 | Conserved hypothetical protein; structural genomic | 98.14 | |
| 2fgx_A | 107 | Putative thioredoxin; NET3, NESG, GFT-glutaredoxin | 98.13 | |
| 3hz8_A | 193 | Thiol:disulfide interchange protein DSBA; thiol-ox | 98.13 | |
| 1t3b_A | 211 | Thiol:disulfide interchange protein DSBC; oxidored | 98.03 | |
| 1h75_A | 81 | Glutaredoxin-like protein NRDH; electron transport | 98.02 | |
| 2znm_A | 195 | Thiol:disulfide interchange protein DSBA; thioredo | 98.0 | |
| 3h93_A | 192 | Thiol:disulfide interchange protein DSBA; disulfid | 97.99 | |
| 1r7h_A | 75 | NRDH-redoxin; thioredoxin, glutaredoxin, redox pro | 97.96 | |
| 1ego_A | 85 | Glutaredoxin; electron transport; NMR {Escherichia | 97.9 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 97.86 | |
| 1un2_A | 197 | DSBA, thiol-disulfide interchange protein; disulfi | 97.85 | |
| 2hze_A | 114 | Glutaredoxin-1; thioredoxin fold, arsenic, dimethy | 97.85 | |
| 1v58_A | 241 | Thiol:disulfide interchange protein DSBG; reduced | 97.84 | |
| 1kte_A | 105 | Thioltransferase; redox-active center, electron tr | 97.82 | |
| 2qc7_A | 240 | ERP31, ERP28, endoplasmic reticulum protein ERP29; | 97.79 | |
| 2rem_A | 193 | Disulfide oxidoreductase; disulfide oxidoreductase | 97.74 | |
| 3feu_A | 185 | Putative lipoprotein; alpha-beta structure, struct | 97.69 | |
| 3nzn_A | 103 | Glutaredoxin; structural genomics, PSI2, MCSG, pro | 97.68 | |
| 2cq9_A | 130 | GLRX2 protein, glutaredoxin 2; glutathione-S-trans | 97.67 | |
| 2lqo_A | 92 | Putative glutaredoxin RV3198.1/MT3292; TRX fold, o | 97.67 | |
| 3gv1_A | 147 | Disulfide interchange protein; neisseria gonorrhoe | 97.66 | |
| 1z6m_A | 175 | Conserved hypothetical protein; structural genomic | 97.63 | |
| 2ht9_A | 146 | Glutaredoxin-2; thioredoxin fold, iron-sulfur clus | 97.59 | |
| 1fov_A | 82 | Glutaredoxin 3, GRX3; active site disulfide, CIS P | 97.58 | |
| 2klx_A | 89 | Glutaredoxin; thioredoxin type domain, ssgcid, ele | 97.53 | |
| 1wjk_A | 100 | C330018D20RIK protein; glutaredoxin, thioredoxin f | 97.52 | |
| 4dvc_A | 184 | Thiol:disulfide interchange protein DSBA; pilus as | 97.51 | |
| 3kp9_A | 291 | Vkorc1/thioredoxin domain protein; warfarin, disul | 97.49 | |
| 3hz8_A | 193 | Thiol:disulfide interchange protein DSBA; thiol-ox | 97.49 | |
| 1h75_A | 81 | Glutaredoxin-like protein NRDH; electron transport | 97.46 | |
| 3ic4_A | 92 | Glutaredoxin (GRX-1); structural genomics, PSI, MC | 97.42 | |
| 3msz_A | 89 | Glutaredoxin 1; alpha-beta sandwich, center for st | 97.39 | |
| 2khp_A | 92 | Glutaredoxin; thioredoxin type domain, ssgcid, ele | 97.39 | |
| 3qmx_A | 99 | Glutaredoxin A, glutaredoxin 3; electron transport | 97.38 |
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-26 Score=214.80 Aligned_cols=199 Identities=20% Similarity=0.299 Sum_probs=142.9
Q ss_pred CCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchh
Q 011791 94 DGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKS 173 (477)
Q Consensus 94 ~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (477)
+++.+.....+||+++|+|||+||++|+.+.|.|.++++.+++.+.++.++.|..|.+
T Consensus 21 ~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~---------------------- 78 (241)
T 3idv_A 21 NDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSA---------------------- 78 (241)
T ss_dssp CTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTC----------------------
T ss_pred cccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCC----------------------
Confidence 3443433334689999999999999999999999999999998765677777777644
Q ss_pred HHHHHHHcCcccCCeEEEECCCCCccccchhhHHhhcCCCCCCCChhhHHHHHHHHHHHhhhhhhhhhhccCCCcceecc
Q 011791 174 REKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGK 253 (477)
Q Consensus 174 ~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~i~~~g~~a~P~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~p~f~l~~ 253 (477)
..+++.|+|.++|++++++ +|+.+.... ..+...+........ .. .....+..+..+
T Consensus 79 -~~l~~~~~v~~~Pt~~~~~-~g~~~~~~g------------~~~~~~l~~~i~~~~---~~------~~~~~~~~~~~~ 135 (241)
T 3idv_A 79 -SVLASRFDVSGYPTIKILK-KGQAVDYEG------------SRTQEEIVAKVREVS---QP------DWTPPPEVTLVL 135 (241)
T ss_dssp -HHHHHHTTCCSSSEEEEEE-TTEEEECCS------------CSCHHHHHHHHHHHH---ST------TCCCCCCSSEEC
T ss_pred -HHHHHhcCCCcCCEEEEEc-CCCcccccC------------cccHHHHHHHHhhcc---Cc------ccccccccceec
Confidence 3488999999999999996 565543211 113333333322111 00 011123333345
Q ss_pred CCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcch
Q 011791 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDAR 333 (477)
Q Consensus 254 ~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~ 333 (477)
++..+......+++++|+|||+||++|+.+.|.+.++++++++++.++.++.|+++...
T Consensus 136 ~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~--------------------- 194 (241)
T 3idv_A 136 TKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAET--------------------- 194 (241)
T ss_dssp CTTTHHHHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCH---------------------
T ss_pred cHHHHHHhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCH---------------------
Confidence 55554433234789999999999999999999999999999876566888888877554
Q ss_pred hHHHHHhcCCCCcceEEEECCCCcEEEe
Q 011791 334 KASLSRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 334 ~~~l~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
.+++.|+|.++||+++++ +|+.+..
T Consensus 195 --~l~~~~~v~~~Pt~~~~~-~g~~~~~ 219 (241)
T 3idv_A 195 --DLAKRFDVSGYPTLKIFR-KGRPYDY 219 (241)
T ss_dssp --HHHHHTTCCSSSEEEEEE-TTEEEEC
T ss_pred --HHHHHcCCcccCEEEEEE-CCeEEEe
Confidence 689999999999999994 6877654
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-23 Score=184.23 Aligned_cols=138 Identities=34% Similarity=0.616 Sum_probs=122.9
Q ss_pred hhccCcCCCc--eecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhc-CCCcEEEEEEEcCCCHHHHH
Q 011791 80 SVLTSHSRDF--VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKG-KGESFEIVLISLDDEEESFK 156 (477)
Q Consensus 80 ~~~g~~~p~f--l~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~-~g~~~~vv~is~D~~~~~~~ 156 (477)
..+|.++|+| +.+.+| .+++++++||+|+|+|||+||++|+.++|.|.+++++|++ .+ ++||+|++|.+.+.++
T Consensus 22 ~~vG~~~P~f~~l~~~~g-~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~--v~vv~v~~d~~~~~~~ 98 (165)
T 3s9f_A 22 SGVAKHLGEALKLRKQAD-TADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKN--FEIILASWDEEEDDFN 98 (165)
T ss_dssp CHHHHHHHHTSCEEETTE-EECSGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTT--EEEEEEECCCSHHHHH
T ss_pred hhhcccCCcceeeecCCC-cccHHHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCC--eEEEEEecCCCHHHHH
Confidence 4567889998 458999 9999999999999999999999999999999999999987 44 9999999999999999
Q ss_pred HhhcCCCCccccCCchhH-HHHHHHcCcccCCeEEEECCC-CCccccchhhHH-hhcCCCCCCCChh
Q 011791 157 RDLGSMPWLALPFKDKSR-EKLARYFELSTLPTLVIIGPD-GKTLHSNVAEAI-EEHGVGAFPFTPE 220 (477)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~-~~l~~~~~v~~~P~~~lid~~-G~i~~~~~~~~i-~~~g~~a~P~~~~ 220 (477)
+++++++|..+++..... ..+++.|++.++|+++|+|++ |+++.+.+...+ ++.....|||..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~lid~~~G~iv~~~~~~~~~~d~~~~~fpw~~~ 165 (165)
T 3s9f_A 99 AYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHALTQDPMGEQFPWRDE 165 (165)
T ss_dssp HHHTTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCCCC
T ss_pred HHHHhCCCcccccCchhHHHHHHHHcCCCCCCEEEEEeCCCCEEEecccHHHHhhCcccccCCCCCC
Confidence 999999999999887655 789999999999999999998 999999976555 5666778999753
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-22 Score=173.59 Aligned_cols=135 Identities=34% Similarity=0.587 Sum_probs=120.4
Q ss_pred ccCcCCC-ce-ecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhc-CCCcEEEEEEEcCCCHHHHHHh
Q 011791 82 LTSHSRD-FV-ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKG-KGESFEIVLISLDDEEESFKRD 158 (477)
Q Consensus 82 ~g~~~p~-fl-~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~-~g~~~~vv~is~D~~~~~~~~~ 158 (477)
++..+|+ |. .+.+|+.+++++++||+++|+||++||++|+.++|.|.++++++++ .+ ++|++|++|.+.+.++++
T Consensus 3 ~~~~~P~~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~--~~vv~v~~d~~~~~~~~~ 80 (144)
T 1i5g_A 3 LKKFFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKN--FEVMLISWDESAEDFKDY 80 (144)
T ss_dssp TTTSCSSCSEEEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTT--EEEEEEECCSSHHHHHHH
T ss_pred hhhhCCCceEEEcCCCCEecHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCC--EEEEEEeCCCCHHHHHHH
Confidence 5678898 74 5899999999999999999999999999999999999999999985 34 999999999999999999
Q ss_pred hcCCCCccccCCc-hhHHHHHHHcCcccCCeEEEEC-CCCCccccchhhHHhhcC-CCCCCCC
Q 011791 159 LGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIG-PDGKTLHSNVAEAIEEHG-VGAFPFT 218 (477)
Q Consensus 159 ~~~~~~~~~~~~~-~~~~~l~~~~~v~~~P~~~lid-~~G~i~~~~~~~~i~~~g-~~a~P~~ 218 (477)
+++++|..+++.. +....+++.|++.++|+++|+| ++|+++.+.+...+.+.. ...|||.
T Consensus 81 ~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~~G~i~~~~~~~~~~~~~~~~~~~w~ 143 (144)
T 1i5g_A 81 YAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPWP 143 (144)
T ss_dssp HTTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred HHhCCccccccCchHHHHHHHHHcCCCCCCEEEEEECCCCcEEeccchhhhhhCcccccCCCC
Confidence 9999999998876 4457899999999999999999 999999999887776544 4668886
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.4e-22 Score=174.15 Aligned_cols=140 Identities=19% Similarity=0.331 Sum_probs=118.8
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhc
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 321 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~ 321 (477)
+...|+|.+ +.+|+.+++++++||++||+||++||++|+.+.|.|.+++++|+++ +++|++|++|.+.+.+++|+++
T Consensus 6 g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~--~~~vv~v~~d~~~~~~~~~~~~ 83 (152)
T 2lrn_A 6 GSVAPAITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDK--GFTIYGVSTDRREEDWKKAIEE 83 (152)
T ss_dssp TEECCCCEEECSSSCEEESGGGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTT--TEEEEEEECCSCHHHHHHHHHH
T ss_pred CCcCCCceeEcCCCCEEeHHHcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhccC--CeEEEEEEccCCHHHHHHHHHH
Confidence 445689999 9999999999999999999999999999999999999999999865 6999999999888999999998
Q ss_pred CCCceeccCcch---hHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCCch
Q 011791 322 MPWLALPFGDAR---KASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPE 398 (477)
Q Consensus 322 ~~~~~~p~~~d~---~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 398 (477)
++ +.+|...|. ...+.+.|+|.++|+++|||++|+++.+.. .. ++|.+.++++++...+
T Consensus 84 ~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~--------------~~---~~l~~~l~~l~~~~~~ 145 (152)
T 2lrn_A 84 DK-SYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKEL--------------RG---DDLYNTVEKFVNGAKE 145 (152)
T ss_dssp HT-CCSEEEEECHHHHHHHHHHTTCCSSCEEEEECTTSEEEEECC--------------CT---THHHHHHHHHHTSSSS
T ss_pred hC-CCCeEEecccchhHHHHHHhCCCcCCeEEEECCCCeEEEeeC--------------CH---HHHHHHHHHHHhhccc
Confidence 76 457777666 678999999999999999999999998841 11 4577777777766554
Q ss_pred hhhc
Q 011791 399 NVKH 402 (477)
Q Consensus 399 ~~~~ 402 (477)
...|
T Consensus 146 ~~~~ 149 (152)
T 2lrn_A 146 GHHH 149 (152)
T ss_dssp CCSS
T ss_pred cccc
Confidence 4433
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.6e-22 Score=171.34 Aligned_cols=125 Identities=42% Similarity=0.745 Sum_probs=112.7
Q ss_pred cCCCc-cee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhc
Q 011791 244 SGDLD-FVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 321 (477)
Q Consensus 244 ~~~p~-f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~ 321 (477)
...|+ |.+ +.+|+.+++++++||++||+||++||++|+.++|.|++++++++++ .+++|++|++|.+.+.+++|+++
T Consensus 5 ~~~P~~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~~vv~v~~d~~~~~~~~~~~~ 83 (144)
T 1i5g_A 5 KFFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK-KNFEVMLISWDESAEDFKDYYAK 83 (144)
T ss_dssp TSCSSCSEEEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCSSHHHHHHHHTT
T ss_pred hhCCCceEEEcCCCCEecHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC-CCEEEEEEeCCCCHHHHHHHHHh
Confidence 34587 888 9999999999999999999999999999999999999999999852 26999999999989999999999
Q ss_pred CCCceeccCc-chhHHHHHhcCCCCcceEEEEC-CCCcEEEeccchhhhh
Q 011791 322 MPWLALPFGD-ARKASLSRKFKVSGIPMLVAIG-PSGRTITKEARDMIAV 369 (477)
Q Consensus 322 ~~~~~~p~~~-d~~~~l~~~~~v~~~Pt~~lid-~~G~iv~~~~~~~~~~ 369 (477)
++|..+|+.. +....+.+.|+|.++|+++||| ++|+++.+.+++.+..
T Consensus 84 ~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~~G~i~~~~~~~~~~~ 133 (144)
T 1i5g_A 84 MPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVK 133 (144)
T ss_dssp CSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHH
T ss_pred CCccccccCchHHHHHHHHHcCCCCCCEEEEEECCCCcEEeccchhhhhh
Confidence 9999999886 6677899999999999999999 9999999987665543
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.4e-22 Score=171.50 Aligned_cols=119 Identities=16% Similarity=0.253 Sum_probs=105.7
Q ss_pred hhccCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHH---HHHHHHhcCCcEEEEEEeCCCChhHHH
Q 011791 241 VLVSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLID---AYKKIKERNESLEVVFISSDRDQTSFD 316 (477)
Q Consensus 241 ~~~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~---l~~~~~~~~~~~~iv~i~~d~~~~~~~ 316 (477)
.++...|+|.+ +.+|+.+++++++||++||+|||+||++|+.++|.|.+ ++++++++ +++|++|+.|.+.+.++
T Consensus 6 ~~G~~ap~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~--~~~vi~i~~d~~~~~~~ 83 (142)
T 3eur_A 6 RLGTKALNFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAK--KLKVLSIYPDEELDEWK 83 (142)
T ss_dssp CTTSBCCCCEEEETTSCEEETTTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTT--SEEEEEEECSSCHHHHH
T ss_pred cCCCccCCcEEEcCCCCEeeHHHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccC--CeEEEEEEcCCCHHHHH
Confidence 44667799999 99999999999999999999999999999999999999 99999875 79999999999989999
Q ss_pred HHHhcCCCceeccCcchhH--HHHHhcCCCCcceEEEECCCCcEEEec
Q 011791 317 EFFKGMPWLALPFGDARKA--SLSRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 317 ~~~~~~~~~~~p~~~d~~~--~l~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
+++++++. .++...|... .+.+.|+|.++|+++|||++|+|+.++
T Consensus 84 ~~~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 130 (142)
T 3eur_A 84 KHRNDFAK-EWTNGYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKD 130 (142)
T ss_dssp HHGGGSCT-TSEEEECTTCHHHHTTCSCCTTCSEEEEECTTCBEEEEE
T ss_pred HHHHhccc-ccccccCccchhhhhhhcCCCcCCeEEEECCCCcEEecC
Confidence 99998873 5555555443 378899999999999999999999885
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.3e-22 Score=171.55 Aligned_cols=137 Identities=31% Similarity=0.593 Sum_probs=120.1
Q ss_pred hccCcCCC-c-eecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhc-CCCcEEEEEEEcCCCHHHHHH
Q 011791 81 VLTSHSRD-F-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKG-KGESFEIVLISLDDEEESFKR 157 (477)
Q Consensus 81 ~~g~~~p~-f-l~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~-~g~~~~vv~is~D~~~~~~~~ 157 (477)
-++..+|+ | +.+.+| .+++++++||+++|+||++||++|+.++|.|.++++++++ .+ ++|++|++|.+.+.+++
T Consensus 3 ~~~~~~P~~f~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~--~~vv~v~~d~~~~~~~~ 79 (146)
T 1o8x_A 3 GLDKYLPGIEKLRRGDG-EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKN--FEVVFCTWDEEEDGFAG 79 (146)
T ss_dssp CGGGTSTTCCEEEETTE-EEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTT--EEEEEEECCCSHHHHHH
T ss_pred chHhhCCCceEEEcCCC-CCcHHHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCC--eEEEEEeCCCCHHHHHH
Confidence 35778999 7 458999 9999999999999999999999999999999999999985 44 99999999999999999
Q ss_pred hhcCCCCccccCCc-hhHHHHHHHcCcccCCeEEEEC-CCCCccccchhhHHhhc-CCCCCCCChh
Q 011791 158 DLGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIG-PDGKTLHSNVAEAIEEH-GVGAFPFTPE 220 (477)
Q Consensus 158 ~~~~~~~~~~~~~~-~~~~~l~~~~~v~~~P~~~lid-~~G~i~~~~~~~~i~~~-g~~a~P~~~~ 220 (477)
++++++|..+++.. +....+++.|++.++|+++|+| ++|+++.+.+...+.+. ....|||.+.
T Consensus 80 ~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~~~~~~~~~~~w~~~ 145 (146)
T 1o8x_A 80 YFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLVKDPEGEQFPWKDA 145 (146)
T ss_dssp HHTTCSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHTTCTTCTTTTCCCC
T ss_pred HHHHCCceeeccchhhHHHHHHHHhCCCCCCEEEEEECCCCeEEEecchhHHhhCCccccCCCCCC
Confidence 99999999988875 4457899999999999999999 99999999887766544 4466888754
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.87 E-value=8.2e-22 Score=170.55 Aligned_cols=135 Identities=37% Similarity=0.621 Sum_probs=119.3
Q ss_pred hccCcCCCc--eecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhc-CCCcEEEEEEEcCCCHHHHHH
Q 011791 81 VLTSHSRDF--VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKG-KGESFEIVLISLDDEEESFKR 157 (477)
Q Consensus 81 ~~g~~~p~f--l~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~-~g~~~~vv~is~D~~~~~~~~ 157 (477)
-+|..+|+| +.+.+| .+++++++||+++|+||++||++|+.++|.|.++++++++ .+ ++|++|++|.+.+.+++
T Consensus 3 ~~g~~~p~~~~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~--~~vv~i~~d~~~~~~~~ 79 (144)
T 1o73_A 3 GLAKYLPGATNLLSKSG-EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKN--FEVVLISWDENESDFHD 79 (144)
T ss_dssp GGGGTSCTTCCBBCTTS-CBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTT--EEEEEEECCSSHHHHHH
T ss_pred chhhhCccceEeecCCC-cCcHHHhCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCC--EEEEEEeCCCCHHHHHH
Confidence 468889997 458999 9999999999999999999999999999999999999984 34 99999999999999999
Q ss_pred hhcCCCCccccCCc-hhHHHHHHHcCcccCCeEEEEC-CCCCccccchhhHHhh-cCCCCCCCC
Q 011791 158 DLGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIG-PDGKTLHSNVAEAIEE-HGVGAFPFT 218 (477)
Q Consensus 158 ~~~~~~~~~~~~~~-~~~~~l~~~~~v~~~P~~~lid-~~G~i~~~~~~~~i~~-~g~~a~P~~ 218 (477)
++++++|..+++.. +....+++.|++.++|+++|+| ++|+++.+.+...+.+ .....|||.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~~~~~~~~~~~W~ 143 (144)
T 1o73_A 80 YYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIEDPDGANFPWP 143 (144)
T ss_dssp HHTTCSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred HHHhCCceEeeccchhHHHHHHHHcCCCCCCEEEEEECCCCeEEecchhhHHhhCCCccCCCCC
Confidence 99999999998875 4456899999999999999999 8999999998776654 444668886
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=194.24 Aligned_cols=261 Identities=18% Similarity=0.230 Sum_probs=156.4
Q ss_pred hhHHHhHhhhcccCCcceEEEEcC--CCeEechhhHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhccCcCCC
Q 011791 11 SETRDKLDELFKVMGIPHLVILDE--NGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRD 88 (477)
Q Consensus 11 ~~~~~~L~~~f~v~g~Ptl~~~~~--~g~~~~~~g~~~i~~~g~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~p~ 88 (477)
.+....|+++|+|.+ |+++++.. ++.+.. .| +++.+.+....... ..|.
T Consensus 68 ~t~~~~v~~~~~v~~-~~i~lfk~f~~~~~~~-~g------------~~~~~~i~~fi~~~---------------~~p~ 118 (361)
T 3uem_A 68 ITSNSDVFSKYQLDK-DGVVLFKKFDEGRNNF-EG------------EVTKENLLDFIKHN---------------QLPL 118 (361)
T ss_dssp EECCHHHHHHTTCSS-SEEEEEESSTTSEEEC-CS------------CCCHHHHHHHHHHH---------------SSCS
T ss_pred EECcHHHHHHhCCCC-CeEEEEEecCCCcccc-CC------------cCCHHHHHHHHHHc---------------CCCc
Confidence 455678999999998 99999973 333222 11 33444444333211 0111
Q ss_pred ceecCCCCe-EecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccc
Q 011791 89 FVISSDGRK-ISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLAL 167 (477)
Q Consensus 89 fl~~~~g~~-v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~ 167 (477)
+...+.+. ..+-....+.++|+|+++||++|..+.|.+.+++++++++ +.++.|..|...
T Consensus 119 -v~~~~~~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~---i~f~~vd~~~~~--------------- 179 (361)
T 3uem_A 119 -VIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGK---ILFIFIDSDHTD--------------- 179 (361)
T ss_dssp -EEECSTTTHHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTT---CEEEEECTTSGG---------------
T ss_pred -ceecCcccHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccCc---eEEEEecCChHH---------------
Confidence 11111111 0111112357889999999999999999999999999876 555555444211
Q ss_pred cCCchhHHHHHHHcCccc--CCeEEEECCCCCccccchhhHHhhcCCCCCCCChhhHHHHHHHHHHHhhhhhhhhhhccC
Q 011791 168 PFKDKSREKLARYFELST--LPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSG 245 (477)
Q Consensus 168 ~~~~~~~~~l~~~~~v~~--~P~~~lid~~G~i~~~~~~~~i~~~g~~a~P~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 245 (477)
...+++.|||.. +|++++++.++....-.. ..-+.+.+.+..+.+........+.+.+.....
T Consensus 180 ------~~~~~~~fgi~~~~~P~~~~~~~~~~~~ky~~---------~~~~~~~~~l~~fi~~~l~g~~~~~~~s~~~p~ 244 (361)
T 3uem_A 180 ------NQRILEFFGLKKEECPAVRLITLEEEMTKYKP---------ESEELTAERITEFCHRFLEGKIKPHLMSQELPE 244 (361)
T ss_dssp ------GHHHHHHTTCCTTTCSEEEEEECC--CCEECC---------SSCCCCHHHHHHHHHHHHTTCSCCCCBCCCCCT
T ss_pred ------HHHHHHHcCCCccCCccEEEEEcCCcccccCC---------CccccCHHHHHHHHHHHhcCCCcccccCCCCCc
Confidence 255889999987 999999986443211100 111246666666654433222222221111111
Q ss_pred C-C-cceeccCCCceecccC-CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcC
Q 011791 246 D-L-DFVVGKNGGKVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 322 (477)
Q Consensus 246 ~-p-~f~l~~~g~~~~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~ 322 (477)
. . +-+..++++++....+ .+|+++|+|||+||++|+++.|.|.+++++++++ .++.++.|+.+...
T Consensus 245 ~~~~~~v~~l~~~~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~-~~v~~~~vd~~~~~---------- 313 (361)
T 3uem_A 245 DWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDH-ENIVIAKMDSTANE---------- 313 (361)
T ss_dssp TTTTSSSEEECTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTC-SSEEEEEEETTTCB----------
T ss_pred ccccCCcEEeecCchhhhcccCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccC-CcEEEEEEECCccc----------
Confidence 1 1 1122556666544333 5899999999999999999999999999999864 24555545444221
Q ss_pred CCceeccCcchhHHHHHhcCCCCcceEEEECCC-CcEEE
Q 011791 323 PWLALPFGDARKASLSRKFKVSGIPMLVAIGPS-GRTIT 360 (477)
Q Consensus 323 ~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~-G~iv~ 360 (477)
++.|+|.++||+++++++ |+.+.
T Consensus 314 ---------------~~~~~v~~~Pt~~~~~~~~~~~~~ 337 (361)
T 3uem_A 314 ---------------VEAVKVHSFPTLKFFPASADRTVI 337 (361)
T ss_dssp ---------------CSSCCCCSSSEEEEECSSSSCCCE
T ss_pred ---------------hhhcCCcccCeEEEEECCCCccee
Confidence 567999999999999554 44333
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.3e-22 Score=169.77 Aligned_cols=117 Identities=19% Similarity=0.306 Sum_probs=106.5
Q ss_pred hccCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHH---HHHHHHhcCCcEEEEEEeCCCChhHHHH
Q 011791 242 LVSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLID---AYKKIKERNESLEVVFISSDRDQTSFDE 317 (477)
Q Consensus 242 ~~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~---l~~~~~~~~~~~~iv~i~~d~~~~~~~~ 317 (477)
++...|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|.+ ++++++++ ++.|++|++|.+.+.+++
T Consensus 3 ~G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~--~~~~v~v~~d~~~~~~~~ 80 (142)
T 3ewl_A 3 AGMKAADFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENG--TLRVLAIYPDENREEWAT 80 (142)
T ss_dssp TTSBCCCCEEECTTCCEEEGGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHT--SEEEEEEECSSCHHHHHH
T ss_pred CCCcCCCCEEECCCCCEEEhhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccC--CeEEEEEEecCCHHHHHH
Confidence 3556799999 99999999999999999999999999999999999998 99999875 699999999999999999
Q ss_pred HHhcCCCceeccCcchhHHHHH--hcCCCCcceEEEECCCCcEEEe
Q 011791 318 FFKGMPWLALPFGDARKASLSR--KFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 318 ~~~~~~~~~~p~~~d~~~~l~~--~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
|+++++ +.+|...|....+.. .|+|.++|+++|||++|+++..
T Consensus 81 ~~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 125 (142)
T 3ewl_A 81 KAVYMP-QGWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVILK 125 (142)
T ss_dssp HHTTSC-TTCEEEECTTCHHHHTTCSCCCSSSEEEEECTTCBEEEC
T ss_pred HHHHcC-CCcceeeCCccchhhHHHcCCCCCCeEEEECCCCCEEec
Confidence 999988 577888787777766 9999999999999999999885
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-22 Score=220.87 Aligned_cols=274 Identities=12% Similarity=0.110 Sum_probs=167.2
Q ss_pred ChhHHHhHhhhcccCCcceEEEEcCCCeEechhhHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhccCcCCCc
Q 011791 10 DSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDF 89 (477)
Q Consensus 10 D~~~~~~L~~~f~v~g~Ptl~~~~~~g~~~~~~g~~~i~~~g~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~p~f 89 (477)
|++...++++.|+|+++||+++++ +|.++...| ..+.+.+.+...... .+.+..+.+..+..+
T Consensus 494 d~~~~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~g------------~~~~~~l~~fi~~~~----~~~v~~l~~~~f~~~ 556 (780)
T 3apo_A 494 DCTIHEGLCNMYNIQAYPTTVVFN-QSSIHEYEG------------HHSAEQILEFIEDLR----NPSVVSLTPSTFNEL 556 (780)
T ss_dssp ETTTCHHHHHHTTCCSSSEEEEEE-TTEEEEECS------------CSCHHHHHHHHHHHH----SCSEEECCHHHHHHH
T ss_pred eCCCCHHHHHHcCCCcCCeEEEEc-CCceeeecC------------cccHHHHHHHHHhhc----ccceeecCcccHHHH
Confidence 566678899999999999999997 465432222 223344433322110 111111111111111
Q ss_pred eecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccC
Q 011791 90 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPF 169 (477)
Q Consensus 90 l~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~ 169 (477)
+. ..-+++.++|.|+++||++|+...|.+.++++.+++. +.++.|..+..
T Consensus 557 v~---------~~~~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~~---v~~~~vd~~~~------------------ 606 (780)
T 3apo_A 557 VK---------QRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGL---INVGSVDCGQY------------------ 606 (780)
T ss_dssp TT---------TCCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEETTTT------------------
T ss_pred hh---------ccCCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCC---eEEEEEECcch------------------
Confidence 10 1112467899999999999999999999999999864 55555554422
Q ss_pred CchhHHHHHHHcCcccCCeEEEECCCCCccccchhhHHhhcCCCCCCCChhhHHHHHHHHHHHhhhhhhhhhhccCCCcc
Q 011791 170 KDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDF 249 (477)
Q Consensus 170 ~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~i~~~g~~a~P~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~p~f 249 (477)
..+++.|+|.++|+++++...++...... .. .| .+.+...+..+... ..+..
T Consensus 607 -----~~l~~~~~v~~~Pti~~~~~~~~~~~~~~-~y---~g---~~~~~~~l~~fi~~----------------~~~~~ 658 (780)
T 3apo_A 607 -----HSFCTQENVQRYPEIRFYPQKSSKAYQYH-SY---NG---WNRDAYSLRSWGLG----------------FLPQA 658 (780)
T ss_dssp -----HHHHHHTTCCSSSEEEEECCCSSSCCSCE-EC---CC---SCCSHHHHHHHHHT----------------TSCCC
T ss_pred -----HHHHHHcCCCCCCeEEEEcCCCcCccchh-hc---CC---CCCCHHHHHHHHhh----------------hcccc
Confidence 34778999999999999976543110000 00 00 01133333333211 11111
Q ss_pred eeccCCCceec-ccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceec
Q 011791 250 VVGKNGGKVPV-SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALP 328 (477)
Q Consensus 250 ~l~~~g~~~~l-~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p 328 (477)
+..+++..+.- ..-.+++++|+|||+||++|+.+.|.+.+++++++++ +.++.|+++...
T Consensus 659 v~~l~~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~~---~~~~~vd~~~~~---------------- 719 (780)
T 3apo_A 659 SIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGK---VRAGKVDCQAYP---------------- 719 (780)
T ss_dssp SEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTCH----------------
T ss_pred cccCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---ceEEEEECCCCH----------------
Confidence 22333333321 1124799999999999999999999999999999754 888888877544
Q ss_pred cCcchhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcC
Q 011791 329 FGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKG 395 (477)
Q Consensus 329 ~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 395 (477)
.+++.|+|.++||++++ ++|+++.+. .|..-+..+. ++|.+.++++++.
T Consensus 720 -------~~~~~~~v~~~Pt~~~~-~~g~~~~~~-------~G~~~g~~~~---~~l~~~l~~~l~~ 768 (780)
T 3apo_A 720 -------QTCQKAGIKAYPSVKLY-QYERAKKSI-------WEEQINSRDA---KTIAALIYGKLET 768 (780)
T ss_dssp -------HHHHHTTCCSSSEEEEE-EEETTTTEE-------EEEEECCCCH---HHHHHHHHHHTTC
T ss_pred -------HHHHhcCCCcCCEEEEE-cCCCccccc-------cCcccCCcCH---HHHHHHHHHHHHH
Confidence 58899999999999999 788765432 2210001233 5566677776654
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.5e-22 Score=217.97 Aligned_cols=292 Identities=13% Similarity=0.130 Sum_probs=179.4
Q ss_pred CChhHHHhHhhhcccCCcceEEEEcCCC-e-EechhhHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhccCcC
Q 011791 9 SDSETRDKLDELFKVMGIPHLVILDENG-K-VLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHS 86 (477)
Q Consensus 9 ~D~~~~~~L~~~f~v~g~Ptl~~~~~~g-~-~~~~~g~~~i~~~g~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 86 (477)
.|++....+++.|++.. |++++++..+ + ....+| .++.+.+........ .
T Consensus 388 ~D~~~~~~~~~~~~~~~-p~i~l~~~~~~e~~~~~~g------------~~~~~~i~~f~~~~~---------------~ 439 (780)
T 3apo_A 388 FDCSSAPGICSDLYVFQ-PSLAVFKGQGTKEYEIHHG------------KKILYDILAFAKESV---------------N 439 (780)
T ss_dssp EEGGGCHHHHHHTTCCS-CEEEEEESSTTSSEEECCS------------CCCHHHHHHHHHHHH---------------T
T ss_pred EeCCCchhhHhhccccC-ChhhhccCCCcceeeeccc------------HhhHHHHHHHhhhcc---------------C
Confidence 35666678999999987 9999998543 1 221112 234444443322110 1
Q ss_pred CCceecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCcc
Q 011791 87 RDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLA 166 (477)
Q Consensus 87 p~fl~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~ 166 (477)
| .+...+++. +.++.|++++|+|||+||++|+.++|.|.+++++++++ +.++.|+.|...
T Consensus 440 ~-~v~~l~~~~--~~~~~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~~---v~~~~vd~~~~~-------------- 499 (780)
T 3apo_A 440 S-HVTTLGPQN--FPASDKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQ---LKVGTLDCTIHE-------------- 499 (780)
T ss_dssp S-CEEECCTTT--SCTTCCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH--------------
T ss_pred C-CCEecCHHH--HHHcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---eEEEEEeCCCCH--------------
Confidence 1 122223322 33448899999999999999999999999999999754 788888776443
Q ss_pred ccCCchhHHHHHHHcCcccCCeEEEECCCCCccccchhhHHhhcCCCCCCCChhhHHHHHHHHHHHhhhhhhhhhhccCC
Q 011791 167 LPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGD 246 (477)
Q Consensus 167 ~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~i~~~g~~a~P~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 246 (477)
.+++.|||.++|++++++ +|++.... | +.+...+..+.+....
T Consensus 500 ---------~~~~~~~v~~~Pt~~~~~-~g~~~~~~--------g----~~~~~~l~~fi~~~~~--------------- 542 (780)
T 3apo_A 500 ---------GLCNMYNIQAYPTTVVFN-QSSIHEYE--------G----HHSAEQILEFIEDLRN--------------- 542 (780)
T ss_dssp ---------HHHHHTTCCSSSEEEEEE-TTEEEEEC--------S----CSCHHHHHHHHHHHHS---------------
T ss_pred ---------HHHHHcCCCcCCeEEEEc-CCceeeec--------C----cccHHHHHHHHHhhcc---------------
Confidence 378899999999999995 56542111 1 1133444443322110
Q ss_pred CcceeccCCCceec---ccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCC
Q 011791 247 LDFVVGKNGGKVPV---SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 323 (477)
Q Consensus 247 p~f~l~~~g~~~~l---~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~ 323 (477)
|. +..++++++.- ..-.++.++|.||++||++|+.+.|.+.+++++++++ +.++.++.+..
T Consensus 543 ~~-v~~l~~~~f~~~v~~~~~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~~---v~~~~vd~~~~------------ 606 (780)
T 3apo_A 543 PS-VVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGL---INVGSVDCGQY------------ 606 (780)
T ss_dssp CS-EEECCHHHHHHHTTTCCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEETTTT------------
T ss_pred cc-eeecCcccHHHHhhccCCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCC---eEEEEEECcch------------
Confidence 11 11122222111 1112578899999999999999999999999999864 65665555432
Q ss_pred CceeccCcchhHHHHHhcCCCCcceEEEECCCCc----EEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCCchh
Q 011791 324 WLALPFGDARKASLSRKFKVSGIPMLVAIGPSGR----TITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPEN 399 (477)
Q Consensus 324 ~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~----iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 399 (477)
..+++.|+|+++|+++++.++++ .+. +.| ..++.+.|.+.+.+.+......
T Consensus 607 -----------~~l~~~~~v~~~Pti~~~~~~~~~~~~~~~--------y~g------~~~~~~~l~~fi~~~~~~~v~~ 661 (780)
T 3apo_A 607 -----------HSFCTQENVQRYPEIRFYPQKSSKAYQYHS--------YNG------WNRDAYSLRSWGLGFLPQASID 661 (780)
T ss_dssp -----------HHHHHHTTCCSSSEEEEECCCSSSCCSCEE--------CCC------SCCSHHHHHHHHHTTSCCCSEE
T ss_pred -----------HHHHHHcCCCCCCeEEEEcCCCcCccchhh--------cCC------CCCCHHHHHHHHhhhccccccc
Confidence 35789999999999999965433 121 111 0122355666666654322111
Q ss_pred hh------ccccccceeeccCCceeccCCCCCC
Q 011791 400 VK------HALHEHELVLDRCGVYSCDGCDEEG 426 (477)
Q Consensus 400 ~~------~~~~~~~~~l~~~~~~~~~~C~~~g 426 (477)
+. ........++..+.++||+.|....
T Consensus 662 l~~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~ 694 (780)
T 3apo_A 662 LTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFA 694 (780)
T ss_dssp ECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHH
T ss_pred CCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHH
Confidence 11 1112344455567789999997543
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.8e-22 Score=172.06 Aligned_cols=121 Identities=16% Similarity=0.139 Sum_probs=102.8
Q ss_pred hccCcCCCceecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhc
Q 011791 81 VLTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLG 160 (477)
Q Consensus 81 ~~g~~~p~fl~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~ 160 (477)
.+|.++|+|.++.+|+.+++++++||+++|+|||+||++|+.++|.|.+++++|++++ ++||+|++|.+.+.++++++
T Consensus 8 ~~G~~~P~f~l~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~--~~vv~vs~d~~~~~~~~~~~ 85 (143)
T 4fo5_A 8 NPGDLAPRIEFLGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDK--IAMCSISMDEKESIFTETVK 85 (143)
T ss_dssp STTSBCCCCCC-----CCCSCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTT--EEEEEEECCSCHHHHHHHHH
T ss_pred CCcccCCceEEcCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCC--EEEEEEEccCCHHHHHHHHH
Confidence 3688999996689999999999999999999999999999999999999999998876 99999999999989999888
Q ss_pred C--CCC-ccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 161 S--MPW-LALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 161 ~--~~~-~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
+ ++| ..+.+..+....+.+.|++.++|+++|+|++|+++.+..
T Consensus 86 ~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 131 (143)
T 4fo5_A 86 IDKLDLSTQFHEGLGKESELYKKYDLRKGFKNFLINDEGVIIAANV 131 (143)
T ss_dssp HHTCCGGGEEECTTGGGSHHHHHTTGGGCCCEEEECTTSBEEEESC
T ss_pred HhCCCCceeeecccccchHHHHHcCCCCCCcEEEECCCCEEEEccC
Confidence 5 566 555555555567899999999999999999999998764
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.6e-22 Score=176.30 Aligned_cols=121 Identities=33% Similarity=0.797 Sum_probs=108.9
Q ss_pred CCCcc-ee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcC
Q 011791 245 GDLDF-VV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 322 (477)
Q Consensus 245 ~~p~f-~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~ 322 (477)
..|+| .+ +.+| .+++++++||++||+|||+||++|+.++|.|++++++|+++ .+++||+|++|.+.+.+++|++++
T Consensus 27 ~~P~f~~l~~~~g-~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~-~~v~vv~v~~d~~~~~~~~~~~~~ 104 (165)
T 3s9f_A 27 HLGEALKLRKQAD-TADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDS-KNFEIILASWDEEEDDFNAYYAKM 104 (165)
T ss_dssp HHHHTSCEEETTE-EECSGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCCSHHHHHHHHTTC
T ss_pred cCCcceeeecCCC-cccHHHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhccC-CCeEEEEEecCCCHHHHHHHHHhC
Confidence 34777 67 8999 99999999999999999999999999999999999999862 269999999999999999999999
Q ss_pred CCceeccCcchh-HHHHHhcCCCCcceEEEECCC-CcEEEeccchhh
Q 011791 323 PWLALPFGDARK-ASLSRKFKVSGIPMLVAIGPS-GRTITKEARDMI 367 (477)
Q Consensus 323 ~~~~~p~~~d~~-~~l~~~~~v~~~Pt~~lid~~-G~iv~~~~~~~~ 367 (477)
+|..+|+..+.. ..+++.|+|.++|+++|||++ |+|+.+.++..+
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~lid~~~G~iv~~~~~~~~ 151 (165)
T 3s9f_A 105 PWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHAL 151 (165)
T ss_dssp SSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHH
T ss_pred CCcccccCchhHHHHHHHHcCCCCCCEEEEEeCCCCEEEecccHHHH
Confidence 999999887654 789999999999999999998 999999765433
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-21 Score=169.46 Aligned_cols=141 Identities=26% Similarity=0.534 Sum_probs=117.5
Q ss_pred cCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcC
Q 011791 244 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 322 (477)
Q Consensus 244 ~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~ 322 (477)
...|+|.+ +.+|+.+++++++||++||+||++||++|+.+.|.|.+++++++++ ++.|+.|++|.+.+.+++|++++
T Consensus 4 ~~~p~~~l~~~~g~~~~l~~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~--~v~vv~v~~d~~~~~~~~~~~~~ 81 (151)
T 2f9s_A 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQ--GVEIVAVNVGESKIAVHNFMKSY 81 (151)
T ss_dssp EECCCCEEECTTCCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG--TEEEEEEEESCCHHHHHHHHHHH
T ss_pred CcCCcceeEcCCCCEEEHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC--CeEEEEEECCCCHHHHHHHHHHc
Confidence 34689999 9999999999999999999999999999999999999999999875 69999999998888999999988
Q ss_pred CCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCCchhhh
Q 011791 323 PWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPENVK 401 (477)
Q Consensus 323 ~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 401 (477)
+ +.+|+..|....+.+.|+|.++|++++||++|+++.+. .|. .+. ++|.+.+++++........
T Consensus 82 ~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~-------~G~----~~~---~~l~~~l~~ll~~~~~~~~ 145 (151)
T 2f9s_A 82 G-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVV-------TGT----MTE---SMIHDYMNLIKPGETSGLE 145 (151)
T ss_dssp T-CCSCEEEETTSHHHHHTTCCSSCEEEEECTTSEEEEEE-------ESC----CCH---HHHHHHHHHHSCC------
T ss_pred C-CCceEEECCchHHHHhcCCCCCCeEEEECCCCcEEEEE-------eCC----CCH---HHHHHHHHHHHhhhhcccc
Confidence 7 46888888888999999999999999999999999873 231 222 5677777777765444333
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-21 Score=167.65 Aligned_cols=117 Identities=21% Similarity=0.310 Sum_probs=105.3
Q ss_pred ccCCCccee-ccCCCceecc--cCCCCEEEEEEeCCCChh--hHhHhHHHHHHHHHH-HhcCCcEEEEEEeCCCChhHHH
Q 011791 243 VSGDLDFVV-GKNGGKVPVS--DLAGKTILLYFSAHWCPP--CRAFLPKLIDAYKKI-KERNESLEVVFISSDRDQTSFD 316 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~--~~~gk~vll~F~a~wC~~--C~~~~p~l~~l~~~~-~~~~~~~~iv~i~~d~~~~~~~ 316 (477)
+...|+|.+ +.+|++++++ +++||++||+||++||++ |+.++|.|.+++++| +++ +++|++|++|.+.+.++
T Consensus 8 G~~~p~f~l~~~~g~~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~--~~~~v~v~~d~~~~~~~ 85 (150)
T 3fw2_A 8 GKYAPFFSLPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNK--YIGMLGISLDVDKQQWK 85 (150)
T ss_dssp TSBCCCCCEEBTTCCEECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCS--SEEEEEEECCSCHHHHH
T ss_pred CCcCCccEeECCCCCEEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCC--CeEEEEEEcCCCHHHHH
Confidence 455699999 9999999999 999999999999999999 999999999999999 654 69999999999889999
Q ss_pred HHHhcCCCceeccCcch---hHHHHHhcCCCCcceEEEECCCCcEEEec
Q 011791 317 EFFKGMPWLALPFGDAR---KASLSRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 317 ~~~~~~~~~~~p~~~d~---~~~l~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
+|+++++ +.+|...+. ...+.+.|+|.++|+++|||++|+++.+.
T Consensus 86 ~~~~~~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 133 (150)
T 3fw2_A 86 DAIKRDT-LDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKN 133 (150)
T ss_dssp HHHHHTT-CCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEES
T ss_pred HHHHHhC-CCceEEEcCcccchHHHHHcCCCccCeEEEECCCCEEEEcc
Confidence 9999887 456665554 66899999999999999999999999884
|
| >3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-21 Score=171.31 Aligned_cols=139 Identities=19% Similarity=0.226 Sum_probs=119.9
Q ss_pred ccCCCccee-ccCCCceecccCCCCE-EEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHH
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKT-ILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 319 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~-vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~ 319 (477)
+...|+|.+ +.+|+.+++++++||+ +||+|| ++||++|+.++|.|++++++|+++ +++||+|++| +.+.+++|+
T Consensus 5 G~~~P~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~--~v~vv~vs~d-~~~~~~~~~ 81 (161)
T 3drn_A 5 GDKAPLFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDY--DVVVIGVSSD-DINSHKRFK 81 (161)
T ss_dssp TSBCCCCEEEETTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTT--CEEEEEEESC-CHHHHHHHH
T ss_pred CCcCCCeEeecCCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHc--CCEEEEEeCC-CHHHHHHHH
Confidence 455699999 9999999999999997 999999 999999999999999999999876 6999999998 578999999
Q ss_pred hcCCCceeccCcchhHHHHHhcCCCC----cceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcC
Q 011791 320 KGMPWLALPFGDARKASLSRKFKVSG----IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKG 395 (477)
Q Consensus 320 ~~~~~~~~p~~~d~~~~l~~~~~v~~----~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 395 (477)
++++ +.+|+..|....+.+.|++.+ +|+++|||++|+|+.... |. ......++++++.++++-..
T Consensus 82 ~~~~-~~~~~~~d~~~~~~~~~~v~~~~~~~P~~~lid~~G~i~~~~~-------g~---~~~~~~~~~il~~l~~l~~~ 150 (161)
T 3drn_A 82 EKYK-LPFILVSDPDKKIRELYGAKGFILPARITFVIDKKGIIRHIYN-------SQ---MNPANHVNEALKALKQIKEE 150 (161)
T ss_dssp HHTT-CCSEEEECTTSHHHHHTTCCCSSSCCCEEEEECTTSBEEEEEE-------CS---SCTTHHHHHHHHHHHHHHHH
T ss_pred HHhC-CCceEEECCcHHHHHHcCCCCcCcccceEEEECCCCEEEEEEe-------cC---CCCCcCHHHHHHHHHHhhhh
Confidence 9988 568888888889999999999 999999999999998843 21 12356677788887776443
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-21 Score=168.62 Aligned_cols=117 Identities=20% Similarity=0.133 Sum_probs=97.8
Q ss_pred ccCCCcceeccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcC
Q 011791 243 VSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 322 (477)
Q Consensus 243 ~~~~p~f~l~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~ 322 (477)
+...|+|.++.+|+.+++++++||++||+|||+||++|+.++|.|++++++|+++ +++|++|++|.+.+.++++++++
T Consensus 10 G~~~P~f~l~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~--~~~vv~vs~d~~~~~~~~~~~~~ 87 (143)
T 4fo5_A 10 GDLAPRIEFLGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPD--KIAMCSISMDEKESIFTETVKID 87 (143)
T ss_dssp TSBCCCCCC-----CCCSCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTT--TEEEEEEECCSCHHHHHHHHHHH
T ss_pred cccCCceEEcCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcC--CEEEEEEEccCCHHHHHHHHHHh
Confidence 4456999998899999999999999999999999999999999999999999865 79999999999989999999976
Q ss_pred CCcee-ccC---cchhHHHHHhcCCCCcceEEEECCCCcEEEec
Q 011791 323 PWLAL-PFG---DARKASLSRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 323 ~~~~~-p~~---~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
+. .+ +.. .+....+.+.|+|.++|+++|||++|+|+.++
T Consensus 88 ~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 130 (143)
T 4fo5_A 88 KL-DLSTQFHEGLGKESELYKKYDLRKGFKNFLINDEGVIIAAN 130 (143)
T ss_dssp TC-CGGGEEECTTGGGSHHHHHTTGGGCCCEEEECTTSBEEEES
T ss_pred CC-CCceeeecccccchHHHHHcCCCCCCcEEEECCCCEEEEcc
Confidence 62 33 332 33346799999999999999999999999884
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.5e-21 Score=167.25 Aligned_cols=123 Identities=40% Similarity=0.771 Sum_probs=110.7
Q ss_pred ccCCCc-cee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHh
Q 011791 243 VSGDLD-FVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK 320 (477)
Q Consensus 243 ~~~~p~-f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~ 320 (477)
....|+ |.+ +.+| .+++++++||++||+||++||++|+.++|.|++++++++++ .+++|++|++|.+.+.+++|++
T Consensus 5 ~~~~P~~f~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~-~~~~vv~v~~d~~~~~~~~~~~ 82 (146)
T 1o8x_A 5 DKYLPGIEKLRRGDG-EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHES-KNFEVVFCTWDEEEDGFAGYFA 82 (146)
T ss_dssp GGTSTTCCEEEETTE-EEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCCSHHHHHHHHT
T ss_pred HhhCCCceEEEcCCC-CCcHHHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhc-CCeEEEEEeCCCCHHHHHHHHH
Confidence 345688 888 9999 99999999999999999999999999999999999999842 2699999999998999999999
Q ss_pred cCCCceeccCc-chhHHHHHhcCCCCcceEEEEC-CCCcEEEeccchhh
Q 011791 321 GMPWLALPFGD-ARKASLSRKFKVSGIPMLVAIG-PSGRTITKEARDMI 367 (477)
Q Consensus 321 ~~~~~~~p~~~-d~~~~l~~~~~v~~~Pt~~lid-~~G~iv~~~~~~~~ 367 (477)
+++|..+|+.. +....+.+.|+|.++|+++||| ++|+++.+.++..+
T Consensus 83 ~~~~~~~~~~~~d~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~ 131 (146)
T 1o8x_A 83 KMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 131 (146)
T ss_dssp TCSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHH
T ss_pred HCCceeeccchhhHHHHHHHHhCCCCCCEEEEEECCCCeEEEecchhHH
Confidence 99999999886 6677899999999999999999 89999999765544
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=176.04 Aligned_cols=184 Identities=15% Similarity=0.234 Sum_probs=120.3
Q ss_pred CCCCEEEEEEecC-CCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 011791 103 LEGKTIGLYFSMS-SYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 181 (477)
Q Consensus 103 l~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (477)
.++++++++||++ ||++|+...|.|.++.+. . .++.++.|.+|... ...+++.|
T Consensus 20 ~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~---~~v~~~~vd~~~~~---------------------~~~~~~~~ 74 (226)
T 1a8l_A 20 MVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-T---DKLSYEIVDFDTPE---------------------GKELAKRY 74 (226)
T ss_dssp CCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-C---TTEEEEEEETTSHH---------------------HHHHHHHT
T ss_pred cCCCeEEEEEecCCCCchhHHHHHHHHHHHhh-C---CceEEEEEeCCCcc---------------------cHHHHHHc
Confidence 4557889999999 999999999999887743 2 23888888776311 14588999
Q ss_pred CcccCCeEEEECCCCCcc-ccchhhHHhhcCCCCCCCChhhHHHHHHHHHHHhhhhhhhhhhccCCCcceeccCCCcee-
Q 011791 182 ELSTLPTLVIIGPDGKTL-HSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKVP- 259 (477)
Q Consensus 182 ~v~~~P~~~lid~~G~i~-~~~~~~~i~~~g~~a~P~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~p~f~l~~~g~~~~- 259 (477)
||.++|+++++. +|+.. .+.. |. | ....+..+....... .. . . ..++...+.
T Consensus 75 ~v~~~Pt~~~~~-~g~~~~~~~~-------G~---~-~~~~l~~~l~~~l~~--~~--------~--~--~~l~~~~~~~ 128 (226)
T 1a8l_A 75 RIDRAPATTITQ-DGKDFGVRYF-------GL---P-AGHEFAAFLEDIVDV--SR--------E--E--TNLMDETKQA 128 (226)
T ss_dssp TCCSSSEEEEEE-TTBCCSEEEE-------SC---C-CTTHHHHHHHHHHHH--HH--------T--C--CCCCHHHHHH
T ss_pred CCCcCceEEEEc-CCceeeEEEe-------cc---C-cHHHHHHHHHHHHhh--cC--------C--C--CCCCHHHHHH
Confidence 999999999984 45322 1110 10 1 122222222111000 00 0 0 011111111
Q ss_pred cccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhc-CCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHH
Q 011791 260 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKER-NESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLS 338 (477)
Q Consensus 260 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~-~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~ 338 (477)
+....++.++|+|||+||++|+.+.|.+.+++++++++ ..++.++.|+++... .++
T Consensus 129 ~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~-----------------------~l~ 185 (226)
T 1a8l_A 129 IRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYP-----------------------EWA 185 (226)
T ss_dssp HTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCH-----------------------HHH
T ss_pred HHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCH-----------------------HHH
Confidence 11223445599999999999999999999999999731 124888888776443 688
Q ss_pred HhcCCCCcceEEEECCCCcEEEe
Q 011791 339 RKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 339 ~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
+.|+|.++||++++ ++|+.+.+
T Consensus 186 ~~~~v~~~Pt~~~~-~~G~~~~~ 207 (226)
T 1a8l_A 186 DQYNVMAVPKIVIQ-VNGEDRVE 207 (226)
T ss_dssp HHTTCCSSCEEEEE-ETTEEEEE
T ss_pred HhCCCcccCeEEEE-eCCceeEE
Confidence 99999999999888 68988765
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.5e-21 Score=169.59 Aligned_cols=138 Identities=17% Similarity=0.266 Sum_probs=115.8
Q ss_pred hhccCCCccee-c-cCCCceecccCCCCEEEEEEeCCCChhhHh-HhHHHHHHHHHHHhcCCcEEEEEEeCC------CC
Q 011791 241 VLVSGDLDFVV-G-KNGGKVPVSDLAGKTILLYFSAHWCPPCRA-FLPKLIDAYKKIKERNESLEVVFISSD------RD 311 (477)
Q Consensus 241 ~~~~~~p~f~l-~-~~g~~~~l~~~~gk~vll~F~a~wC~~C~~-~~p~l~~l~~~~~~~~~~~~iv~i~~d------~~ 311 (477)
+.+.+.|+|.+ + .+|+.+++++++||++||+||++||++|+. ++|.|++++++|+++ ++.|++|++| .+
T Consensus 4 ~~g~~~p~~~~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~--~v~~v~v~~~~~~~~~~~ 81 (160)
T 3lor_A 4 LDNAPLLELDVQEWVNHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDES--QVQVIGLHSVFEHHDVMT 81 (160)
T ss_dssp CTTCCBCCCCEEEESSSCCCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTT--TEEEEEEECCCSCGGGSC
T ss_pred cCCCcCCCcccccccCCCccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcC--CcEEEEEeccccccccCC
Confidence 34566789988 6 899999999999999999999999999999 599999999999865 6999999984 57
Q ss_pred hhHHHHHHhcCCCceeccCcchhHH------HHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHH
Q 011791 312 QTSFDEFFKGMPWLALPFGDARKAS------LSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEI 385 (477)
Q Consensus 312 ~~~~~~~~~~~~~~~~p~~~d~~~~------l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l 385 (477)
.+.+++|+++++ +.+|+..|.... +.+.|+|.++|+++|||++|+++.+.. | ..+. ++|
T Consensus 82 ~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~-------g----~~~~---~~l 146 (160)
T 3lor_A 82 PEALKVFIDEFG-IKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQVQF-------G----QVDD---FVL 146 (160)
T ss_dssp HHHHHHHHHHTT-CCSCEEEECCCTTCSSCHHHHHTTCCSSSEEEEECTTSBEEEEEE-------S----CCCH---HHH
T ss_pred HHHHHHHHHHcC-CCCcEEECCccccchhhhHHHhcccCccceEEEECCCCcEEEEec-------C----cCCH---HHH
Confidence 789999999988 557777776666 999999999999999999999998742 3 2233 456
Q ss_pred HHHHHHHHcC
Q 011791 386 DGQYNEMAKG 395 (477)
Q Consensus 386 ~~~~~~~~~~ 395 (477)
.+.|+++++.
T Consensus 147 ~~~i~~ll~~ 156 (160)
T 3lor_A 147 GLLLGSLLSE 156 (160)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhc
Confidence 7777777754
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.6e-21 Score=165.90 Aligned_cols=139 Identities=24% Similarity=0.420 Sum_probs=118.7
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhc
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 321 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~ 321 (477)
+...|+|.+ + +|+.+++++++||++||+||++||++|+.+.|.|.+++++++++ +++|++|++|.+.+.+++|+++
T Consensus 6 G~~~P~f~l~~-~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~--~~~~v~v~~d~~~~~~~~~~~~ 82 (152)
T 3gl3_A 6 GDKAPDFALPG-KTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAK--GFQVVAVNLDAKTGDAMKFLAQ 82 (152)
T ss_dssp TSBCCCCEEEB-SSSEEEGGGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGG--TEEEEEEECCSSHHHHHHHHHH
T ss_pred CCcCCceEeeC-CCCeEeHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC--CeEEEEEECCCCHHHHHHHHHH
Confidence 445699999 7 99999999999999999999999999999999999999999876 6999999999988999999999
Q ss_pred CCCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCCc
Q 011791 322 MPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWP 397 (477)
Q Consensus 322 ~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 397 (477)
++ ..+++..|....+.+.|+|.++|+++|||++|+++.+.. |. .+.+.++|.+.|++.+.+.+
T Consensus 83 ~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~-------g~-----~~~~~~~l~~~i~~~~~~~~ 145 (152)
T 3gl3_A 83 VP-AEFTVAFDPKGQTPRLYGVKGMPTSFLIDRNGKVLLQHV-------GF-----RPADKEALEQQILAALGGNE 145 (152)
T ss_dssp SC-CCSEEEECTTCHHHHHTTCCSSSEEEEECTTSBEEEEEE-------SC-----CTTTHHHHHHHHHHHTC---
T ss_pred cC-CCCceeECCcchhHHHcCCCCCCeEEEECCCCCEEEEEc-------cC-----CCcCHHHHHHHHHHHHcccc
Confidence 88 578888888889999999999999999999999998742 21 22345677777777765533
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.6e-21 Score=165.64 Aligned_cols=121 Identities=18% Similarity=0.264 Sum_probs=105.7
Q ss_pred hhccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHH---HHHHHhcCCCcEEEEEEEcCCCHHHH
Q 011791 80 SVLTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVE---VYEKLKGKGESFEIVLISLDDEEESF 155 (477)
Q Consensus 80 ~~~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~---l~~~~~~~g~~~~vv~is~D~~~~~~ 155 (477)
..+|.++|+|.+ +.+|+.+++++++||+++|+|||+||++|+.++|.|.+ +++++++.+ ++||+|+.|.+.+.+
T Consensus 5 ~~~G~~ap~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~--~~vi~i~~d~~~~~~ 82 (142)
T 3eur_A 5 NRLGTKALNFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKK--LKVLSIYPDEELDEW 82 (142)
T ss_dssp TCTTSBCCCCEEEETTSCEEETTTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTS--EEEEEEECSSCHHHH
T ss_pred hcCCCccCCcEEEcCCCCEeeHHHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCC--eEEEEEEcCCCHHHH
Confidence 457999999954 99999999999999999999999999999999999999 999998876 999999999999999
Q ss_pred HHhhcCCC--CccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 156 KRDLGSMP--WLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 156 ~~~~~~~~--~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
+++++.++ |..+... +....+.+.|++.++|+++|+|++|+++.+..
T Consensus 83 ~~~~~~~~~~~~~~~d~-~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 131 (142)
T 3eur_A 83 KKHRNDFAKEWTNGYDK-ELVIKNKNLYDLRAIPTLYLLDKNKTVLLKDA 131 (142)
T ss_dssp HHHGGGSCTTSEEEECT-TCHHHHTTCSCCTTCSEEEEECTTCBEEEEEE
T ss_pred HHHHHhcccccccccCc-cchhhhhhhcCCCcCCeEEEECCCCcEEecCC
Confidence 99999764 5544322 22245788999999999999999999998764
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.85 E-value=6.3e-21 Score=164.92 Aligned_cols=124 Identities=40% Similarity=0.784 Sum_probs=110.8
Q ss_pred ccCCCcc-ee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHh
Q 011791 243 VSGDLDF-VV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK 320 (477)
Q Consensus 243 ~~~~p~f-~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~ 320 (477)
+...|+| .+ +.+| .+++++++||++||+||++||++|+.+.|.|+++++++++. .+++|++|++|.+.+.+++|++
T Consensus 5 g~~~p~~~~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~~vv~i~~d~~~~~~~~~~~ 82 (144)
T 1o73_A 5 AKYLPGATNLLSKSG-EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA-KNFEVVLISWDENESDFHDYYG 82 (144)
T ss_dssp GGTSCTTCCBBCTTS-CBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCSSHHHHHHHHT
T ss_pred hhhCccceEeecCCC-cCcHHHhCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccC-CCEEEEEEeCCCCHHHHHHHHH
Confidence 4556887 77 9999 99999999999999999999999999999999999999832 2699999999998899999999
Q ss_pred cCCCceeccCc-chhHHHHHhcCCCCcceEEEEC-CCCcEEEeccchhhh
Q 011791 321 GMPWLALPFGD-ARKASLSRKFKVSGIPMLVAIG-PSGRTITKEARDMIA 368 (477)
Q Consensus 321 ~~~~~~~p~~~-d~~~~l~~~~~v~~~Pt~~lid-~~G~iv~~~~~~~~~ 368 (477)
+++|..+|+.. +....+.+.|+|.++|++++|| ++|+++.+.++..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~~ 132 (144)
T 1o73_A 83 KMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVI 132 (144)
T ss_dssp TCSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHHHHH
T ss_pred hCCceEeeccchhHHHHHHHHcCCCCCCEEEEEECCCCeEEecchhhHHh
Confidence 99999999886 5577899999999999999999 899999997655443
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-21 Score=167.91 Aligned_cols=136 Identities=18% Similarity=0.276 Sum_probs=117.5
Q ss_pred hccCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHh
Q 011791 242 LVSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK 320 (477)
Q Consensus 242 ~~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~ 320 (477)
.+...|+|.+ +.+|+.+++++++||++||+||++||++|+.+.|.|.+++++++++ ++.|++|++|.+.+.+++|++
T Consensus 7 ~G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~--~~~~v~v~~d~~~~~~~~~~~ 84 (148)
T 3hcz_A 7 LGKKAPNLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAK--GIQVYAANIERKDEEWLKFIR 84 (148)
T ss_dssp TTSBCCCCCCBCTTSCBCCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGG--TEEEEEEECCSSSHHHHHHHH
T ss_pred CCCcCCceEEecCCCCEEEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccC--CEEEEEEEecCCHHHHHHHHH
Confidence 3556799999 9999999999999999999999999999999999999999999876 699999999988889999999
Q ss_pred cCCCceeccCcchhHH--HHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHH
Q 011791 321 GMPWLALPFGDARKAS--LSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMA 393 (477)
Q Consensus 321 ~~~~~~~p~~~d~~~~--l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 393 (477)
++++..++...|.... +.+.|+|.++|++++||++|+++.+.. | ..+++++++.+.+.+
T Consensus 85 ~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~-------g-------~~~~~~~l~~l~~~l 145 (148)
T 3hcz_A 85 SKKIGGWLNVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRI-------G-------YENLDDFLVQYEKSL 145 (148)
T ss_dssp HHTCTTSEEEECTTCCCCHHHHHCCCSSCEEEEECTTCBEEEESC-------C-------GGGHHHHHHHHHHHH
T ss_pred HcCCCCceEEeccccchhHHHhcCcCCCCEEEEECCCCcEEEecC-------C-------HHHHHHHHHHHHHHh
Confidence 9886657777776666 999999999999999999999998742 2 244566666666554
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.2e-21 Score=168.16 Aligned_cols=135 Identities=16% Similarity=0.296 Sum_probs=112.4
Q ss_pred cCCCccee-cc--CCCceecccCCCCEEEEEEeCCCChhhHhH-hHHHHHHHHHHHhcCCcEEEEEEeCC------CChh
Q 011791 244 SGDLDFVV-GK--NGGKVPVSDLAGKTILLYFSAHWCPPCRAF-LPKLIDAYKKIKERNESLEVVFISSD------RDQT 313 (477)
Q Consensus 244 ~~~p~f~l-~~--~g~~~~l~~~~gk~vll~F~a~wC~~C~~~-~p~l~~l~~~~~~~~~~~~iv~i~~d------~~~~ 313 (477)
...|+|.+ +. +|+.+++++++||++||+||++||++|+.+ +|.|++++++|+++ ++.|++|++| .+.+
T Consensus 4 ~~aP~f~l~~~~~~g~~~~l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~--~v~~v~v~~~~~~~~~~~~~ 81 (158)
T 3eyt_A 4 MKAPELQIQQWFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPED--KVAVLGLHTVFEHHEAMTPI 81 (158)
T ss_dssp EECCCCCEEEEESCSSCCCTGGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTT--TEEEEEEECCCSCGGGSCHH
T ss_pred CcCCCceehhhhcCCCccCHHHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcC--CEEEEEEEecccccccCCHH
Confidence 34689998 63 789999999999999999999999999996 99999999999865 6999999984 4678
Q ss_pred HHHHHHhcCCCceeccCcchhH-----HHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHH
Q 011791 314 SFDEFFKGMPWLALPFGDARKA-----SLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQ 388 (477)
Q Consensus 314 ~~~~~~~~~~~~~~p~~~d~~~-----~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~ 388 (477)
.+++|+++++ +.+|...|... .+.+.|+|.++|+++|||++|+++.+.. | ..+. ++|.+.
T Consensus 82 ~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~-------g----~~~~---~~l~~~ 146 (158)
T 3eyt_A 82 SLKAFLHEYR-IKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAHHF-------G----DVSE---LLLGAE 146 (158)
T ss_dssp HHHHHHHHTT-CCSCEEEECCCSSSSCHHHHHTTCCSSSEEEEECTTSEEEEEEE-------S----CCCH---HHHHHH
T ss_pred HHHHHHHHcC-CCceEEEcCccchhhHHHHHHcCCCCCCEEEEECCCCCEEEEEe-------C----CCCH---HHHHHH
Confidence 9999999987 45777766655 6899999999999999999999998742 2 2233 456677
Q ss_pred HHHHHcC
Q 011791 389 YNEMAKG 395 (477)
Q Consensus 389 ~~~~~~~ 395 (477)
|+++++.
T Consensus 147 i~~ll~~ 153 (158)
T 3eyt_A 147 IATLLGE 153 (158)
T ss_dssp HHHHHTS
T ss_pred HHHHhcc
Confidence 7777764
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=164.58 Aligned_cols=115 Identities=19% Similarity=0.308 Sum_probs=101.7
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhc
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 321 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~ 321 (477)
+...|+|.+ +.+|+++++++++||++||+||++||++|+.++|.|++++++|+++ +++|++|++|...+.+++|..+
T Consensus 12 g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~--~~~vv~i~~d~~~~~~~~~~~~ 89 (152)
T 2lrt_A 12 EASIIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQ--GFEIYQISLDGDEHFWKTSADN 89 (152)
T ss_dssp TTCSCCCCEEBTTSCEECTTTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG--TEEEEEEECSCCHHHHHHHHTT
T ss_pred CCCCCCeEEEcCCCCEEeHHHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccC--CeEEEEEEccCCHHHHHHHHhC
Confidence 445699999 9999999999999999999999999999999999999999999876 6999999999888888888876
Q ss_pred CCCceeccCcchhH---HHHHhcCCCCcceEEEECCCCcEEEec
Q 011791 322 MPWLALPFGDARKA---SLSRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 322 ~~~~~~p~~~d~~~---~l~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
.+| |...|... .+.+.|+|.++|+++|||++|+++.+.
T Consensus 90 ~~~---~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 130 (152)
T 2lrt_A 90 LPW---VCVRDANGAYSSYISLYNVTNLPSVFLVNRNNELSARG 130 (152)
T ss_dssp CSS---EEEECSSGGGCHHHHHHTCCSCSEEEEEETTTEEEEET
T ss_pred CCc---eEEECCCCcchHHHHHcCcccCceEEEECCCCeEEEec
Confidence 554 44444444 489999999999999999999999984
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=164.67 Aligned_cols=135 Identities=21% Similarity=0.357 Sum_probs=107.3
Q ss_pred CCcceeccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCc
Q 011791 246 DLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWL 325 (477)
Q Consensus 246 ~p~f~l~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~ 325 (477)
.++|.+..+|+.+++++++||++||+|||+||++|+.++|.|++++++|+++ ++.|++|++| +.+.+++|+++++ +
T Consensus 5 a~~~~~~~~G~~~~l~~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~--~v~vv~v~~d-~~~~~~~~~~~~~-~ 80 (151)
T 3raz_A 5 ADELAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKG--SVDMVGIALD-TSDNIGNFLKQTP-V 80 (151)
T ss_dssp --CEEETTTCCEECGGGCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTT--TEEEEEEESS-CHHHHHHHHHHSC-C
T ss_pred cchhhcccCCCEecHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccC--CeEEEEEECC-ChHHHHHHHHHcC-C
Confidence 4566656899999999999999999999999999999999999999999654 7999999998 5678999999887 4
Q ss_pred eeccCc---chhHHHHHhcC--CCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCCch
Q 011791 326 ALPFGD---ARKASLSRKFK--VSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPE 398 (477)
Q Consensus 326 ~~p~~~---d~~~~l~~~~~--v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 398 (477)
.+|... +....+.+.|+ +.++|+++|||++|+++.+.. | ..+. ++|.+.|+++..+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~-------g----~~~~---~~l~~~l~~l~~~~~~ 144 (151)
T 3raz_A 81 SYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTIT-------G----EVNE---KSLTDAVKLAHSKCRE 144 (151)
T ss_dssp SSCEEEECCSCHHHHHHTTTCCSCCSSEEEEEETTTTEEEECC-------S----CCCH---HHHHHHHHHHHTC---
T ss_pred CCceEecCccchHHHHHHhCCccCCCCEEEEECCCCcEEEEEC-------C----CCCH---HHHHHHHHHHHHHhhc
Confidence 566553 34567899999 999999999999999998742 2 2233 5566667776665444
|
| >1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=178.35 Aligned_cols=209 Identities=14% Similarity=0.175 Sum_probs=143.7
Q ss_pred hccCcCCCcee-cC-CCC--eEecCC-CCCCEEEEEEe-cCCCccch-hhHHHHHHHHHHHhcCCCcE-EEEEEEcCCCH
Q 011791 81 VLTSHSRDFVI-SS-DGR--KISVSD-LEGKTIGLYFS-MSSYKASA-EFTPRLVEVYEKLKGKGESF-EIVLISLDDEE 152 (477)
Q Consensus 81 ~~g~~~p~fl~-~~-~g~--~v~ls~-l~gk~vll~F~-a~wC~~C~-~~~p~l~~l~~~~~~~g~~~-~vv~is~D~~~ 152 (477)
.+|.++|+|.+ +. +|+ .+++++ ++||+++|+|| ++||++|+ .++|.|++++++|+++| + +||+||.|+ .
T Consensus 4 ~~G~~aP~f~l~~~~~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~--~~~vv~is~d~-~ 80 (241)
T 1nm3_A 4 MEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYG--VDDILVVSVND-T 80 (241)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTT--CCEEEEEESSC-H
T ss_pred cCCCCCCCeEEEcccCCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEEcCC-H
Confidence 36889999965 64 777 999999 89999999999 99999999 99999999999999887 9 999999985 5
Q ss_pred HHHHHhhcCCCCccccCCchhHHHHHHHcCcc-----------cCCeEEEECCCCCccccchhhHHhhcCCCCCCCChhh
Q 011791 153 ESFKRDLGSMPWLALPFKDKSREKLARYFELS-----------TLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEK 221 (477)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~i~~~~~~~~i~~~g~~a~P~~~~~ 221 (477)
+..+++.++.....+|...+....+++.||+. .+|+++|| ++|++++....... ..-|+....
T Consensus 81 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~t~li-~~G~i~~~~~~~~~-----~~~~~~~~~ 154 (241)
T 1nm3_A 81 FVMNAWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLV-KNGVVEKMFIEPNE-----PGDPFKVSD 154 (241)
T ss_dssp HHHHHHHHHTTCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEE-ETTEEEEEEECCSC-----SSCCCSSSS
T ss_pred HHHHHHHHhcCCCceEEEECCCcHHHHHhCceeecccccCcccceeEEEEE-ECCEEEEEEEeccC-----CCccceecC
Confidence 56666766555333555555566789999985 45999999 99999987642100 000111123
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccCCCcceeccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcE
Q 011791 222 FAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESL 301 (477)
Q Consensus 222 ~~~l~~~~~~~~~~~~l~~~~~~~~p~f~l~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~ 301 (477)
++++.+... ... . ....++.|+.+||++|++....|.+. ++
T Consensus 155 ~~~il~~l~------------------------~~~-----i-~~~~i~ly~~~~Cp~C~~a~~~L~~~---------~i 195 (241)
T 1nm3_A 155 ADTMLKYLA------------------------PQH-----Q-VQESISIFTKPGCPFCAKAKQLLHDK---------GL 195 (241)
T ss_dssp HHHHHHHHC------------------------TTS-----C-CCCCEEEEECSSCHHHHHHHHHHHHH---------TC
T ss_pred HHHHHHHhh------------------------hhc-----c-ccceEEEEECCCChHHHHHHHHHHHc---------CC
Confidence 333322110 000 0 12235567889999999998877653 23
Q ss_pred EEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEE
Q 011791 302 EVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTIT 360 (477)
Q Consensus 302 ~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~ 360 (477)
.+..++++.+.. ...+.+.++..++|.++ + +|+.+.
T Consensus 196 ~~~~~~i~~~~~--------------------~~~l~~~~g~~~vP~~~-~--~g~~i~ 231 (241)
T 1nm3_A 196 SFEEIILGHDAT--------------------IVSVRAVSGRTTVPQVF-I--GGKHIG 231 (241)
T ss_dssp CCEEEETTTTCC--------------------HHHHHHHTCCSSSCEEE-E--TTEEEE
T ss_pred ceEEEECCCchH--------------------HHHHHHHhCCCCcCEEE-E--CCEEEE
Confidence 344455554321 13577778999999975 4 466553
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.3e-21 Score=166.81 Aligned_cols=142 Identities=25% Similarity=0.467 Sum_probs=115.4
Q ss_pred hccCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCC-hhHHHHHH
Q 011791 242 LVSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD-QTSFDEFF 319 (477)
Q Consensus 242 ~~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~-~~~~~~~~ 319 (477)
.+...|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|.++++++++. ++.+++|++|.+ .+.+++|+
T Consensus 4 ~G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~~v~v~~d~~~~~~~~~~~ 81 (154)
T 3kcm_A 4 EENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGK--PFRMLCVSIDEGGKVAVEEFF 81 (154)
T ss_dssp TTSBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTS--SEEEEEEECCTTHHHHHHHHH
T ss_pred CCCCCCCeEEEcCCCCEEehhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC--CeEEEEEEcCCcchHHHHHHH
Confidence 3556799999 9999999999999999999999999999999999999999999864 699999999987 77899999
Q ss_pred hcCCCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCCch
Q 011791 320 KGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPE 398 (477)
Q Consensus 320 ~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 398 (477)
++++ +.+|+..|....+.+.|+|.++|+++|||++|+++.+. .|... .+. +++.+.|+++....+.
T Consensus 82 ~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~-------~g~~~--~~~---~~l~~~l~~l~~~~~~ 147 (154)
T 3kcm_A 82 RKTG-FTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKV-------VGAME--WDH---PEVIAFLNNELSKARE 147 (154)
T ss_dssp HHHC-CCCCEEECTTCHHHHHHTCCSBCEEEEECTTSBEEEEE-------ESCCC--TTS---HHHHHHHHTC------
T ss_pred HHcC-CCeeEEecCchHHHHHhCCCCCCeEEEECCCCcEEEEE-------cCCCc--ccc---HHHHHHHHHHHHHhhh
Confidence 9887 56888888888999999999999999999999999873 33221 122 4566666665544433
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.9e-21 Score=164.69 Aligned_cols=119 Identities=14% Similarity=0.251 Sum_probs=101.1
Q ss_pred hccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHH---HHHHHhcCCCcEEEEEEEcCCCHHHHH
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVE---VYEKLKGKGESFEIVLISLDDEEESFK 156 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~---l~~~~~~~g~~~~vv~is~D~~~~~~~ 156 (477)
.+|.++|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.+ +++++++++ +.|++|++|.+.+.++
T Consensus 2 ~~G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~--~~~v~v~~d~~~~~~~ 79 (142)
T 3ewl_A 2 NAGMKAADFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGT--LRVLAIYPDENREEWA 79 (142)
T ss_dssp CTTSBCCCCEEECTTCCEEEGGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTS--EEEEEEECSSCHHHHH
T ss_pred CCCCcCCCCEEECCCCCEEEhhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCC--eEEEEEEecCCHHHHH
Confidence 36899999955 99999999999999999999999999999999999998 999999877 9999999999999999
Q ss_pred HhhcCCCCccccCCchhHHHHHH--HcCcccCCeEEEECCCCCccccc
Q 011791 157 RDLGSMPWLALPFKDKSREKLAR--YFELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~~--~~~v~~~P~~~lid~~G~i~~~~ 202 (477)
++++++++ .++...+....+.. .|++.++|+++|+|++|+++...
T Consensus 80 ~~~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 126 (142)
T 3ewl_A 80 TKAVYMPQ-GWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVILKD 126 (142)
T ss_dssp HHHTTSCT-TCEEEECTTCHHHHTTCSCCCSSSEEEEECTTCBEEECS
T ss_pred HHHHHcCC-CcceeeCCccchhhHHHcCCCCCCeEEEECCCCCEEecC
Confidence 99987652 22222233333444 89999999999999999998754
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=165.08 Aligned_cols=122 Identities=23% Similarity=0.416 Sum_probs=109.5
Q ss_pred hhccCcCCCce-ecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHh
Q 011791 80 SVLTSHSRDFV-ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 158 (477)
Q Consensus 80 ~~~g~~~p~fl-~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~ 158 (477)
...|.++|+|. .+.+|+.+++++++||+++|+||++||++|+.++|.|.+++++|+++| ++||+|++|.+.+.++++
T Consensus 9 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~--~~vv~i~~d~~~~~~~~~ 86 (152)
T 2lrt_A 9 KIKEASIIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQG--FEIYQISLDGDEHFWKTS 86 (152)
T ss_dssp SSCTTCSCCCCEEBTTSCEECTTTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEECSCCHHHHHHH
T ss_pred hccCCCCCCeEEEcCCCCEEeHHHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCC--eEEEEEEccCCHHHHHHH
Confidence 45688899995 499999999999999999999999999999999999999999999887 999999999998888888
Q ss_pred hcCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 159 LGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
...++|..+.+.......+.+.|++.++|+++|+|++|+++.+..
T Consensus 87 ~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 131 (152)
T 2lrt_A 87 ADNLPWVCVRDANGAYSSYISLYNVTNLPSVFLVNRNNELSARGE 131 (152)
T ss_dssp HTTCSSEEEECSSGGGCHHHHHHTCCSCSEEEEEETTTEEEEETT
T ss_pred HhCCCceEEECCCCcchHHHHHcCcccCceEEEECCCCeEEEecC
Confidence 888888877666555456889999999999999999999998764
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-20 Score=165.21 Aligned_cols=142 Identities=23% Similarity=0.405 Sum_probs=113.5
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhc
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 321 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~ 321 (477)
+...|+|.+ +.+|+.+++++++||++||+||++||++|+.+.|.|++++++++++ ++.++.|++|.+.+.+++|+++
T Consensus 11 g~~~p~~~l~~~~g~~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~--~v~~v~v~~d~~~~~~~~~~~~ 88 (165)
T 3or5_A 11 PTPAPSFSGVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASR--GFTFVGIAVNEQLPNVKNYMKT 88 (165)
T ss_dssp CCBCCCCEEECTTSCEEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT--TEEEEEEECSCCHHHHHHHHHH
T ss_pred CCCCCCceeeCCCCCEechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccC--CeEEEEEECCCCHHHHHHHHHH
Confidence 445699999 9999999999999999999999999999999999999999999865 6999999999888999999998
Q ss_pred CCCceeccCcchhHHHHHhc------CCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcC
Q 011791 322 MPWLALPFGDARKASLSRKF------KVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKG 395 (477)
Q Consensus 322 ~~~~~~p~~~d~~~~l~~~~------~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 395 (477)
++ +.+|...+.. .+.+.| ++.++|+++|||++|+++.+.. | ..+. ++|.+.|++++..
T Consensus 89 ~~-~~~~~~~~~~-~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~-------g----~~~~---~~l~~~l~~~l~~ 152 (165)
T 3or5_A 89 QG-IIYPVMMATP-ELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIV-------G----PRSK---ADFDRIVKMALGA 152 (165)
T ss_dssp HT-CCSCEEECCH-HHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEEC-------S----CCCH---HHHHHHHHHHHC-
T ss_pred cC-CCCceEecCH-HHHHHHhhhhccCCCCCCeEEEECCCCcEEEEEc-------C----CCCH---HHHHHHHHHHHhh
Confidence 87 4667666654 677777 8999999999999999998732 2 2223 5567777777765
Q ss_pred Cchhhhc
Q 011791 396 WPENVKH 402 (477)
Q Consensus 396 ~~~~~~~ 402 (477)
...+...
T Consensus 153 ~~~~~~~ 159 (165)
T 3or5_A 153 KAATKEG 159 (165)
T ss_dssp -------
T ss_pred hcccccc
Confidence 5444433
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=163.30 Aligned_cols=117 Identities=20% Similarity=0.356 Sum_probs=104.9
Q ss_pred ccCCCccee-ccCCCceecc--cCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHH-HhcCCcEEEEEEeCCCChhHHHHH
Q 011791 243 VSGDLDFVV-GKNGGKVPVS--DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKI-KERNESLEVVFISSDRDQTSFDEF 318 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~--~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~-~~~~~~~~iv~i~~d~~~~~~~~~ 318 (477)
+...|+|.+ +.+|+.++++ +++||++||+||++||++|+.++|.|.++++++ +++ ++.|++|++|.+.+.++++
T Consensus 8 g~~~p~~~l~~~~g~~~~l~~~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~~v~v~~d~~~~~~~~~ 85 (148)
T 3fkf_A 8 GKSAPYFSLPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNK--NFAMLGISLDIDREAWETA 85 (148)
T ss_dssp TSBCCCCCEEBTTSCEECTTSTTTTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCT--TEEEEEEECCSCHHHHHHH
T ss_pred CCcCCCeEeeCCCCCEEeccccccCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCC--CeEEEEEECCCCHHHHHHH
Confidence 445699999 9999999999 999999999999999999999999999999999 654 6999999999998999999
Q ss_pred HhcCCCceeccCcch---hHHHHHhcCCCCcceEEEECCCCcEEEec
Q 011791 319 FKGMPWLALPFGDAR---KASLSRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 319 ~~~~~~~~~p~~~d~---~~~l~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
+++++ +.+|...+. ...+.+.|+|.++|++++||++|+++.+.
T Consensus 86 ~~~~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 131 (148)
T 3fkf_A 86 IKKDT-LSWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILARD 131 (148)
T ss_dssp HHHTT-CCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEES
T ss_pred HHHcC-CCceEEEccCCcchHHHHhcCCCCcCEEEEECCCCeEEEec
Confidence 99887 356666554 67899999999999999999999999883
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-20 Score=161.99 Aligned_cols=121 Identities=22% Similarity=0.368 Sum_probs=108.0
Q ss_pred hccCcCCCcee-cCCCCeEecC--CCCCCEEEEEEecCCCcc--chhhHHHHHHHHHHH-hcCCCcEEEEEEEcCCCHHH
Q 011791 81 VLTSHSRDFVI-SSDGRKISVS--DLEGKTIGLYFSMSSYKA--SAEFTPRLVEVYEKL-KGKGESFEIVLISLDDEEES 154 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls--~l~gk~vll~F~a~wC~~--C~~~~p~l~~l~~~~-~~~g~~~~vv~is~D~~~~~ 154 (477)
.+|.++|+|.+ +.+|+.++++ +++||+++|+||++||++ |+.++|.|.+++++| ++++ +++|+|++|.+.+.
T Consensus 6 ~~G~~~p~f~l~~~~g~~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~--~~~v~v~~d~~~~~ 83 (150)
T 3fw2_A 6 EIGKYAPFFSLPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKY--IGMLGISLDVDKQQ 83 (150)
T ss_dssp STTSBCCCCCEEBTTCCEECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSS--EEEEEEECCSCHHH
T ss_pred cCCCcCCccEeECCCCCEEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCC--eEEEEEEcCCCHHH
Confidence 36899999954 9999999999 999999999999999999 999999999999999 7766 99999999999889
Q ss_pred HHHhhcC--CCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 155 FKRDLGS--MPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 155 ~~~~~~~--~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
+++++++ ++|..+.+..+....+.+.|++.++|+++|+|++|+++.+..
T Consensus 84 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 134 (150)
T 3fw2_A 84 WKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKNL 134 (150)
T ss_dssp HHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEESC
T ss_pred HHHHHHHhCCCceEEEcCcccchHHHHHcCCCccCeEEEECCCCEEEEccC
Confidence 9999884 467777665555668999999999999999999999998763
|
| >3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.2e-21 Score=177.48 Aligned_cols=148 Identities=16% Similarity=0.214 Sum_probs=121.1
Q ss_pred ccCCCccee-ccCCCceecccCCCC-EEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC-------CChh
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGK-TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQT 313 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk-~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d-------~~~~ 313 (477)
+...|+|.+ +.+|+++++++++|| ++||+||++||++|+.++|.|++++++|+++ +++||+|++| .+.+
T Consensus 35 G~~aP~f~l~~~~G~~v~l~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~Vs~d~~~~~~~d~~~ 112 (218)
T 3u5r_E 35 GTRAADFVLPDAGGNLFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQ--GLAVVAINSNDAQAFPEETLE 112 (218)
T ss_dssp TCBCCCCCEECTTCCEECGGGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTT--TEEEEEEECSCTTTCGGGSHH
T ss_pred CCcCCCcEeECCCCCEEeHHHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhC--CcEEEEEECCcccccccCCHH
Confidence 556699999 999999999999999 5999999999999999999999999999876 6999999996 5778
Q ss_pred HHHHHHhcCCCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHH
Q 011791 314 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMA 393 (477)
Q Consensus 314 ~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 393 (477)
.+++|+++++ +.+|+..|....+.+.|+|.++|+++|||++|+|+++...+.. ......+.+ .++|.+.|++++
T Consensus 113 ~~~~~~~~~~-~~~~~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~g~~d~~--~~~~~~~~~---~~~l~~~i~~ll 186 (218)
T 3u5r_E 113 RVGAEVKAYG-YGFPYLKDASQSVAKAYGAACTPDFFLYDRERRLVYHGQFDDA--RPGNGKDVT---GADLRAAVDAVL 186 (218)
T ss_dssp HHHHHHHHHT-CCSCEEECTTCHHHHHHTCCEESEEEEECTTCBEEEEECSSSC--CTTSCCCCC---CHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCccEEECCccHHHHHcCCCCCCeEEEECCCCcEEEecccccc--ccccccccC---HHHHHHHHHHHH
Confidence 8999999887 5888888888899999999999999999999999987542211 000111222 256777888887
Q ss_pred cCCch
Q 011791 394 KGWPE 398 (477)
Q Consensus 394 ~~~~~ 398 (477)
.+.+.
T Consensus 187 ~~~~~ 191 (218)
T 3u5r_E 187 KGKDV 191 (218)
T ss_dssp TTCCC
T ss_pred cCCCC
Confidence 76443
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-20 Score=162.23 Aligned_cols=139 Identities=21% Similarity=0.401 Sum_probs=117.8
Q ss_pred ccCCC-ccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHh
Q 011791 243 VSGDL-DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK 320 (477)
Q Consensus 243 ~~~~p-~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~ 320 (477)
+...| +|.+ +.+|+.+++++++||++||+||++||++|+.+.|.|.+++++++++ ++.++.|++|.+.+.+++|++
T Consensus 6 G~~~p~~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~--~~~~v~v~~d~~~~~~~~~~~ 83 (152)
T 2lja_A 6 GNPSAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGK--DIHFVSLSCDKNKKAWENMVT 83 (152)
T ss_dssp TCCCSSSCEEEETTTEEEESTTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTS--SEEEEEEECCSCHHHHHHHHH
T ss_pred CCCCCcccEeecCCCCEeeHHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccC--CeEEEEEEccCcHHHHHHHHH
Confidence 44568 9999 9999999999999999999999999999999999999999999764 699999999988889999999
Q ss_pred cCCCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCCc
Q 011791 321 GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWP 397 (477)
Q Consensus 321 ~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 397 (477)
++++..+++..+....+.+.|+|.++|+++++|++|+++.+.. | ..+. ++|.+.|++++...+
T Consensus 84 ~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~-------g----~~~~---~~l~~~l~~~~~~~~ 146 (152)
T 2lja_A 84 KDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRDGKIISANM-------T----RPSD---PKTAEKFNELLGLEG 146 (152)
T ss_dssp HHTCCSEEEECSSCTHHHHHTTCCSSCCEEEECTTSCEEESSC-------C----CTTC---HHHHHHHHHHHTCCS
T ss_pred hcCCCCceeecCcchhHHHHcCcCCCCEEEEECCCCeEEEccC-------C----CCCH---HHHHHHHHHHhcccc
Confidence 8876666777777788999999999999999999999998742 2 1122 556677777666543
|
| >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-20 Score=166.15 Aligned_cols=137 Identities=16% Similarity=0.194 Sum_probs=118.0
Q ss_pred hccCCCcce--e-ccCCCceecccCCCCEEEEEEeC-CCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHH
Q 011791 242 LVSGDLDFV--V-GKNGGKVPVSDLAGKTILLYFSA-HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDE 317 (477)
Q Consensus 242 ~~~~~p~f~--l-~~~g~~~~l~~~~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~ 317 (477)
++...|+|. + +.+|+++++++++||++||+||+ +||++|+.++|.|++++++|+++ +++||+|++| +.+.+++
T Consensus 9 ~G~~~P~f~~~l~~~~G~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~--~~~vv~vs~d-~~~~~~~ 85 (163)
T 3gkn_A 9 LELPAATFDLPLSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKA--GAKILGVSRD-SVKSHDN 85 (163)
T ss_dssp CCCCGGGGGCCEECSTTCEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHT--TCEEEEEESS-CHHHHHH
T ss_pred cCCcCCCccccccCCCCCEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHC--CCEEEEEeCC-CHHHHHH
Confidence 355669999 9 99999999999999999999998 99999999999999999999976 6999999998 7788999
Q ss_pred HHhcCCCceeccCcchhHHHHHhcCCCC------------cceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHH
Q 011791 318 FFKGMPWLALPFGDARKASLSRKFKVSG------------IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEI 385 (477)
Q Consensus 318 ~~~~~~~~~~p~~~d~~~~l~~~~~v~~------------~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l 385 (477)
|+++++ +.+|+..|....+.+.|++.. +|+++|||++|+|+.... + ......++++
T Consensus 86 ~~~~~~-~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~-------~----~~~~~~~~~i 153 (163)
T 3gkn_A 86 FCAKQG-FAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAWR-------K----VKVAGHADAV 153 (163)
T ss_dssp HHHHHC-CSSCEEECTTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEEC-------S----CCSTTHHHHH
T ss_pred HHHHhC-CCceEEECCcHHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEEc-------C----CCcccCHHHH
Confidence 999887 678888888889999999987 999999999999998742 2 1224556778
Q ss_pred HHHHHHHH
Q 011791 386 DGQYNEMA 393 (477)
Q Consensus 386 ~~~~~~~~ 393 (477)
++.++++.
T Consensus 154 l~~l~~l~ 161 (163)
T 3gkn_A 154 LAALKAHA 161 (163)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 78777654
|
| >4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-21 Score=171.22 Aligned_cols=136 Identities=22% Similarity=0.245 Sum_probs=107.5
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHh
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK 320 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~ 320 (477)
+...|+|.+ +.+|+++++++++||+++|+|| ++||++|+.++|.|+++++++++. ++.+++|+.| +.+..++|.+
T Consensus 7 G~~aPdF~l~~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~--~~~~v~vs~d-~~~~~~~~~~ 83 (157)
T 4g2e_A 7 GELAPDFELPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQV--NAVVLGISVD-PPFSNKAFKE 83 (157)
T ss_dssp TSBCCCCEEEBTTSCEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGC--SSEEEEEESS-CHHHHHHHHH
T ss_pred CCCCcCeEeECCCCCEEeHHHHCCCeEEEEecCCCCCCccccchhhccccccccccc--CceEeeeccc-chhHHHHHHH
Confidence 556799999 9999999999999999999999 999999999999999999999876 7999999998 5678889999
Q ss_pred cCCCceeccCcchhHHHHHhcCCC-----------CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHH
Q 011791 321 GMPWLALPFGDARKASLSRKFKVS-----------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQY 389 (477)
Q Consensus 321 ~~~~~~~p~~~d~~~~l~~~~~v~-----------~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~ 389 (477)
+++ +++|++.|.+..+++.|||. ..|++||||++|+|+.++. |.+ +..+.+.+++++.|
T Consensus 84 ~~~-~~~p~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~~~-------~~~--~~~~~~~~eil~~l 153 (157)
T 4g2e_A 84 HNK-LNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWV-------SDD--PTKEPPYDEIEKVV 153 (157)
T ss_dssp HTT-CCSEEEECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEEEE-------ESS--TTCCCCHHHHHHHH
T ss_pred HcC-CcEEEEEcCCcHHHHHcCCccccccCCCcceeeeeEEEECCCCEEEEEEE-------CCC--CCCCCCHHHHHHHH
Confidence 887 57899999999999999984 4689999999999998743 211 12233456666666
Q ss_pred HH
Q 011791 390 NE 391 (477)
Q Consensus 390 ~~ 391 (477)
+.
T Consensus 154 ~~ 155 (157)
T 4g2e_A 154 KS 155 (157)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-20 Score=161.88 Aligned_cols=143 Identities=19% Similarity=0.286 Sum_probs=118.6
Q ss_pred hhccCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC-ChhHHHHH
Q 011791 241 VLVSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-DQTSFDEF 318 (477)
Q Consensus 241 ~~~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~-~~~~~~~~ 318 (477)
+.+...|+|.+ +.+|+.+++++++||++||+||++||++|+.+.|.|.+++++++++ ++.|++|+++. +.+.+++|
T Consensus 3 ~~G~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~--~~~vv~v~~~~~~~~~~~~~ 80 (153)
T 2l5o_A 3 LDSKTAPAFSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNK--NFQVLAVAQPIDPIESVRQY 80 (153)
T ss_dssp -CCTTCCSCEEECTTSCEEEHHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGT--TEEEEEEECTTSCHHHHHHH
T ss_pred CCCCCCCCcEeecCCCCCccHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccC--CeEEEEEecCCCCHHHHHHH
Confidence 34556799999 9999999999999999999999999999999999999999999875 69999999864 56788999
Q ss_pred HhcCCCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCCch
Q 011791 319 FKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPE 398 (477)
Q Consensus 319 ~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 398 (477)
+++++ +.+++..+....+.+.|+|.++|++++||++|+++.+. .|. . +.++|.+.|++++.....
T Consensus 81 ~~~~~-~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~~~~-------~g~----~---~~~~l~~~l~~ll~~~~~ 145 (153)
T 2l5o_A 81 VKDYG-LPFTVMYDADKAVGQAFGTQVYPTSVLIGKKGEILKTY-------VGE----P---DFGKLYQEIDTAWRNSDA 145 (153)
T ss_dssp HHHTT-CCSEEEECSSCHHHHHHTCCSSSEEEEECSSSCCCEEE-------ESS----C---CHHHHHHHHHHHHHCCSS
T ss_pred HHHcC-CCceEEcCchHHHHHHcCCCccCeEEEECCCCcEEEEE-------cCC----C---CHHHHHHHHHHHHHhhhh
Confidence 99887 55777777778899999999999999999999998763 231 1 236678888888776544
Q ss_pred hh
Q 011791 399 NV 400 (477)
Q Consensus 399 ~~ 400 (477)
+.
T Consensus 146 ~~ 147 (153)
T 2l5o_A 146 EG 147 (153)
T ss_dssp CC
T ss_pred cc
Confidence 33
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.3e-20 Score=161.41 Aligned_cols=120 Identities=22% Similarity=0.414 Sum_probs=105.9
Q ss_pred hccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhh
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 159 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~ 159 (477)
.+|.++|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.+++++|++++ +.|++|++|.+.+.+.+++
T Consensus 4 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~d~~~~~~~~~~ 81 (152)
T 2lrn_A 4 ATGSVAPAITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKG--FTIYGVSTDRREEDWKKAI 81 (152)
T ss_dssp CTTEECCCCEEECSSSCEEESGGGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTT--EEEEEEECCSCHHHHHHHH
T ss_pred cCCCcCCCceeEcCCCCEEeHHHcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCC--eEEEEEEccCCHHHHHHHH
Confidence 36888999954 89999999999999999999999999999999999999999999876 9999999999888888888
Q ss_pred cC--CCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccc
Q 011791 160 GS--MPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 160 ~~--~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 202 (477)
++ ++|..+.+.......+++.|++.++|+++|+|++|+++.+.
T Consensus 82 ~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 126 (152)
T 2lrn_A 82 EEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKE 126 (152)
T ss_dssp HHHTCCSEEEEECHHHHHHHHHHTTCCSSCEEEEECTTSEEEEEC
T ss_pred HHhCCCCeEEecccchhHHHHHHhCCCcCCeEEEECCCCeEEEee
Confidence 74 56666555444467899999999999999999999998875
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.9e-20 Score=157.00 Aligned_cols=114 Identities=25% Similarity=0.485 Sum_probs=103.3
Q ss_pred CCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEe-----CCCChhHHHHHH
Q 011791 246 DLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS-----SDRDQTSFDEFF 319 (477)
Q Consensus 246 ~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~-----~d~~~~~~~~~~ 319 (477)
.|+|.+ +.+|+.+++++++||++||+||++||++|+.+.|.|.+++++++. ++.++.|. .+.+.+.+++|+
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~v~i~~~~~~~~~~~~~~~~~~ 78 (138)
T 4evm_A 2 VADFELMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGD---DYVVLTVVSPGHKGEQSEADFKNWY 78 (138)
T ss_dssp CCCCEEEBTTSCEEEGGGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTT---TEEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CCcceeECCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCC---CcEEEEEEcCCCCchhhHHHHHHHH
Confidence 488999 999999999999999999999999999999999999999988644 58899994 455778999999
Q ss_pred hcCCCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEec
Q 011791 320 KGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 320 ~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
+++++..+|+..+....+.+.|++.++|+++++|++|+++.+.
T Consensus 79 ~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 121 (138)
T 4evm_A 79 KGLDYKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGKLVKTH 121 (138)
T ss_dssp TTCCCTTCCEEECTTCHHHHHTTCCSSSEEEEECTTCCEEEEE
T ss_pred hhcCCCCeeEEECcchHHHHHcCcccCCeEEEECCCCcEEEee
Confidence 9999778998888888999999999999999999999999874
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-19 Score=162.53 Aligned_cols=117 Identities=17% Similarity=0.217 Sum_probs=104.2
Q ss_pred ccCCCccee-cc--CCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcE------EEEEEeCCC-Ch
Q 011791 243 VSGDLDFVV-GK--NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESL------EVVFISSDR-DQ 312 (477)
Q Consensus 243 ~~~~p~f~l-~~--~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~------~iv~i~~d~-~~ 312 (477)
+...|+|.+ +. +|+.+++++++||++||+||++||++|+.++|.|++++++|+++ ++ +|++|++|. +.
T Consensus 34 g~~~p~f~l~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~--~~~~~~~v~~v~v~~d~~~~ 111 (183)
T 3lwa_A 34 RQQLPDIGGDSLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAA--GNGDTPGGTVLGINVRDYSR 111 (183)
T ss_dssp CCCCCCCEEEBSSSTTCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHC--C---CCSEEEEEEECSCCCH
T ss_pred CCCCCceeccccccCCcEecHHHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhc--CCCccCCcEEEEEECCCCCH
Confidence 445699999 88 99999999999999999999999999999999999999999876 46 999999998 78
Q ss_pred hHHHHHHhcCCCceeccCcchhHHHHHhc---CCCCcceEEEECCCCcEEEec
Q 011791 313 TSFDEFFKGMPWLALPFGDARKASLSRKF---KVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 313 ~~~~~~~~~~~~~~~p~~~d~~~~l~~~~---~v~~~Pt~~lid~~G~iv~~~ 362 (477)
+.+++|+++++ +.+|+..|....+.+.| ++.++|+++|||++|+++.+.
T Consensus 112 ~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 163 (183)
T 3lwa_A 112 DIAQDFVTDNG-LDYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHRPAAVF 163 (183)
T ss_dssp HHHHHHHHHTT-CCSCEEECTTCGGGGGTTTCCTTCCSEEEEECTTSCEEEEE
T ss_pred HHHHHHHHHcC-CCccEEECCcchHHHHhccCCCCCCCeEEEECCCCcEEEEE
Confidence 89999999887 56777777777778777 589999999999999999874
|
| >3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=162.75 Aligned_cols=116 Identities=20% Similarity=0.264 Sum_probs=102.7
Q ss_pred hhccCCCccee-ccCC--CceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHH
Q 011791 241 VLVSGDLDFVV-GKNG--GKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDE 317 (477)
Q Consensus 241 ~~~~~~p~f~l-~~~g--~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~ 317 (477)
.++...|+|.+ +.+| +.+++++++||++||+||++||++|+.++|.|++++++ ++.|++|++|.+.+.+++
T Consensus 31 ~~G~~~P~f~l~~~~g~~~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~------~v~vv~vs~~d~~~~~~~ 104 (176)
T 3kh7_A 31 LIGKPFPAFDLPSVQDPARRLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ------GVVIYGINYKDDNAAAIK 104 (176)
T ss_dssp TTTSBCCCCEEEBSSCTTSEEEGGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHT------TCEEEEEEESCCHHHHHH
T ss_pred ccCCcCCCcEecccCCCCceecHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHC------CCEEEEEeCCCCHHHHHH
Confidence 34566799999 8888 88999999999999999999999999999999998775 489999999889999999
Q ss_pred HHhcCCCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEec
Q 011791 318 FFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 318 ~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
|++++++....+..|....+.+.|+|.++|+++|||++|+|+.+.
T Consensus 105 ~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 149 (176)
T 3kh7_A 105 WLNELHNPYLLSISDADGTLGLDLGVYGAPETYLIDKQGIIRHKI 149 (176)
T ss_dssp HHHHTTCCCSEEEEETTCHHHHHHTCCSSCEEEEECTTCBEEEEE
T ss_pred HHHHcCCCCceEEECCcchHHHHcCCCCCCeEEEECCCCeEEEEE
Confidence 999988544335667778999999999999999999999999874
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3e-19 Score=167.17 Aligned_cols=174 Identities=18% Similarity=0.200 Sum_probs=113.8
Q ss_pred CCEEEEEE----ecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 011791 105 GKTIGLYF----SMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180 (477)
Q Consensus 105 gk~vll~F----~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (477)
+.++++.| |++||++|+.++|.+.++++.+.+.+ ++.++.|..|.+ ..+++.
T Consensus 21 ~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~-~v~~~~vd~~~~-----------------------~~l~~~ 76 (229)
T 2ywm_A 21 EPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQD-KIKLDIYSPFTH-----------------------KEETEK 76 (229)
T ss_dssp SCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTT-TEEEEEECTTTC-----------------------HHHHHH
T ss_pred CCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCC-ceEEEEecCccc-----------------------HHHHHH
Confidence 35566666 68999999999999999998885422 388777766544 458999
Q ss_pred cCcccCCeEEEECCCCCccccchhhHHhhcCCCCCCCChhhHHHHHHHHHHHhhhhhhhhhhccCCCcceeccCCCcee-
Q 011791 181 FELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKVP- 259 (477)
Q Consensus 181 ~~v~~~P~~~lid~~G~i~~~~~~~~i~~~g~~a~P~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~p~f~l~~~g~~~~- 259 (477)
|+|+++|++++++ +|....+.. |. | ....+..+...... .. . +.. .++...+.
T Consensus 77 ~~v~~~Ptl~~~~-~~~~~~~~~-------G~---~-~~~~l~~~~~~~~~--~~--------~--~~~--~l~~~~~~~ 130 (229)
T 2ywm_A 77 YGVDRVPTIVIEG-DKDYGIRYI-------GL---P-AGLEFTTLINGIFH--VS--------Q--RKP--QLSEKTLEL 130 (229)
T ss_dssp TTCCBSSEEEEES-SSCCCEEEE-------SC---C-CTTHHHHHHHHHHH--HH--------T--TCC--SCCHHHHHH
T ss_pred cCCCcCcEEEEEC-CCcccceec-------CC---c-cHHHHHHHHHHHHh--cc--------C--Ccc--CCCHHHHHH
Confidence 9999999999996 343322211 11 0 12222222211100 00 0 000 11111111
Q ss_pred cccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHH
Q 011791 260 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 339 (477)
Q Consensus 260 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~ 339 (477)
+....++.++++||++||++|+.+.|.++++++++. ++.++.|+++... .+++
T Consensus 131 ~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~----~v~~~~vd~~~~~-----------------------~l~~ 183 (229)
T 2ywm_A 131 LQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALAND----YITSKVIDASENQ-----------------------DLAE 183 (229)
T ss_dssp HTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHCT----TEEEEEEEGGGCH-----------------------HHHH
T ss_pred HHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHCC----CeEEEEEECCCCH-----------------------HHHH
Confidence 112234566899999999999999999999988872 4888888777543 6899
Q ss_pred hcCCCCcceEEEECCCCcE
Q 011791 340 KFKVSGIPMLVAIGPSGRT 358 (477)
Q Consensus 340 ~~~v~~~Pt~~lid~~G~i 358 (477)
.|+|.++||+++ +|++
T Consensus 184 ~~~v~~~Pt~~~---~G~~ 199 (229)
T 2ywm_A 184 QFQVVGVPKIVI---NKGV 199 (229)
T ss_dssp HTTCCSSSEEEE---GGGT
T ss_pred HcCCcccCEEEE---CCEE
Confidence 999999999998 6774
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=154.43 Aligned_cols=112 Identities=21% Similarity=0.356 Sum_probs=103.7
Q ss_pred CCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCC
Q 011791 245 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 323 (477)
Q Consensus 245 ~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~ 323 (477)
..|+|.+ +.+|+.+++++++||+++|+||++||++|+.+.|.|.+++++++ ++.++.|++|.+.+.+++|+++++
T Consensus 4 ~~p~~~~~~~~g~~~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~ 79 (136)
T 1zzo_A 4 AQLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP----EVTFVGVAGLDQVPAMQEFVNKYP 79 (136)
T ss_dssp GGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEECSSCHHHHHHHHHHTT
T ss_pred CCCCcccccCCCCEeeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC----CeEEEEEeCCCCHHHHHHHHHHcC
Confidence 3588998 99999999999999999999999999999999999999999886 489999999988999999999998
Q ss_pred CceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEe
Q 011791 324 WLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 324 ~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
...+|+..+....+.+.|+|.++|++++||++|+++ +
T Consensus 80 ~~~~~~~~d~~~~~~~~~~i~~~P~~~~id~~g~i~-~ 116 (136)
T 1zzo_A 80 VKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVD-V 116 (136)
T ss_dssp CTTSEEEECTTCHHHHHTTCCSSSEEEEECTTCCEE-E
T ss_pred CCceEEEEcCCcHHHHHcCCCCCceEEEECCCCCEE-E
Confidence 658888888888999999999999999999999998 5
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.3e-19 Score=165.74 Aligned_cols=195 Identities=13% Similarity=0.190 Sum_probs=125.4
Q ss_pred CEEEEEEecCC--CccchhhHHHHHHHHHHHhc-CCCc-EEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 011791 106 KTIGLYFSMSS--YKASAEFTPRLVEVYEKLKG-KGES-FEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 181 (477)
Q Consensus 106 k~vll~F~a~w--C~~C~~~~p~l~~l~~~~~~-~g~~-~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (477)
++|+|.||+.| |++|+...+.+.++.+.+.. +|+. +.++.+..|.. ..+++.|
T Consensus 26 ~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~-----------------------~~~~~~~ 82 (243)
T 2hls_A 26 NPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESD-----------------------SDKFSEF 82 (243)
T ss_dssp SCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTT-----------------------HHHHHHT
T ss_pred CCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcC-----------------------HHHHHhc
Confidence 56889999999 99999999999999887532 2211 66666665543 3478999
Q ss_pred CcccCCeEEEECCCCCccccchhhHHhhcCCCCCCCChhhHHHHHHHHHHHhhhhhhhhhhccCCCcceeccCCCce-ec
Q 011791 182 ELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKV-PV 260 (477)
Q Consensus 182 ~v~~~P~~~lid~~G~i~~~~~~~~i~~~g~~a~P~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~p~f~l~~~g~~~-~l 260 (477)
||.++|++.+++ |...+. |. | ....+..+...... .+ ...+ .+ +...+ .+
T Consensus 83 gv~~~Pt~~i~~--g~~~~~---------G~---~-~~~~l~~fv~~~l~--~~--------~~~~--~l--~~~~~~~~ 133 (243)
T 2hls_A 83 KVERVPTVAFLG--GEVRWT---------GI---P-AGEEIRALVEVIMR--LS--------EDES--GL--EDATKEAL 133 (243)
T ss_dssp TCCSSSEEEETT--TTEEEE---------SC---C-CTTHHHHHHHHHHH--HH--------TTCC--CC--CHHHHHHH
T ss_pred CCCcCCEEEEEC--CceeEc---------CC---C-cHHHHHHHHHHHHh--cc--------CCCC--CC--CHHHHHHH
Confidence 999999999983 411111 11 0 11222232211100 00 0000 00 00000 12
Q ss_pred ccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhc-CCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHH
Q 011791 261 SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKER-NESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 339 (477)
Q Consensus 261 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~-~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~ 339 (477)
.++.++++++.|||+||++|+.+.|.|++++.+++.+ .+++.+..|+++... .+++
T Consensus 134 ~~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~-----------------------~~~~ 190 (243)
T 2hls_A 134 KSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENP-----------------------DIAD 190 (243)
T ss_dssp HHCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCH-----------------------HHHH
T ss_pred HHcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCH-----------------------HHHH
Confidence 3456889999999999999999999999999998531 135888888776543 5788
Q ss_pred hcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHc
Q 011791 340 KFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAK 394 (477)
Q Consensus 340 ~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 394 (477)
.|+|+++||+++ +|+++..+. .+ .++|.+.+++.+.
T Consensus 191 ~~~V~~vPt~~i---~G~~~~~G~-------------~~---~~~l~~~l~~~~~ 226 (243)
T 2hls_A 191 KYGVMSVPSIAI---NGYLVFVGV-------------PY---EEDFLDYVKSAAE 226 (243)
T ss_dssp HTTCCSSSEEEE---TTEEEEESC-------------CC---HHHHHHHHHHHHT
T ss_pred HcCCeeeCeEEE---CCEEEEeCC-------------CC---HHHHHHHHHHHhh
Confidence 999999999988 788764321 12 3556777776654
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.9e-20 Score=157.32 Aligned_cols=117 Identities=21% Similarity=0.461 Sum_probs=105.5
Q ss_pred hccCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC---ChhHHHH
Q 011791 242 LVSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR---DQTSFDE 317 (477)
Q Consensus 242 ~~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~---~~~~~~~ 317 (477)
.+...|+|.+ +.+|+.+++++ +||++||+||++||++|+.+.|.|.+++++++.. ++.++.|++|. +.+.+++
T Consensus 11 ~g~~~p~~~l~~~~g~~~~l~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~~v~v~~d~~~~~~~~~~~ 87 (145)
T 3erw_A 11 QPAVPAVFLMKTIEGEDISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSD--SVKLVTVNLVNSEQNQQVVED 87 (145)
T ss_dssp -CCSCCEEEEECTTSCEEEESC-TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCS--SEEEEEEECGGGSSCHHHHHH
T ss_pred CCCcCCCceeecCCCCEEeHHH-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCC--CEEEEEEEccCCcCCHHHHHH
Confidence 3556699999 99999999999 9999999999999999999999999999998744 69999999986 7889999
Q ss_pred HHhcCCCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEec
Q 011791 318 FFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 318 ~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
|+++++ +.+|+..+....+.+.|+|.++|++++||++|+++.+.
T Consensus 88 ~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 131 (145)
T 3erw_A 88 FIKANK-LTFPIVLDSKGELMKEYHIITIPTSFLLNEKGEIEKTK 131 (145)
T ss_dssp HHHHTT-CCSCEEECSSSHHHHHTTCCEESEEEEECTTCCEEEEE
T ss_pred HHHHcC-CceeEEEcCchhHHHhcCcCccCeEEEEcCCCcEEEEE
Confidence 999887 56888888888999999999999999999999999873
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.3e-20 Score=155.84 Aligned_cols=111 Identities=21% Similarity=0.341 Sum_probs=102.5
Q ss_pred CCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCC
Q 011791 245 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 323 (477)
Q Consensus 245 ~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~ 323 (477)
..|+|.+ +.+|+.+++++++||+++|+||++||++|+.+.|.|++++++++ ++.++.|++|.+.+.+++|+++++
T Consensus 3 ~~p~~~l~~~~g~~~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~ 78 (136)
T 1lu4_A 3 ERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP----AVTFVGIATRADVGAMQSFVSKYN 78 (136)
T ss_dssp GGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEECSSCHHHHHHHHHHHT
T ss_pred CCCCeEeecCCCCeecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC----CcEEEEEEcCCCHHHHHHHHHHcC
Confidence 3588998 99999999999999999999999999999999999999999886 489999999988999999999887
Q ss_pred CceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEe
Q 011791 324 WLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 324 ~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
+ .+|...|....+.+.|++.++|+++++|++|+++ +
T Consensus 79 ~-~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~-~ 114 (136)
T 1lu4_A 79 L-NFTNLNDADGVIWARYNVPWQPAFVFYRADGTST-F 114 (136)
T ss_dssp C-CSEEEECTTSHHHHHTTCCSSSEEEEECTTSCEE-E
T ss_pred C-CceEEECCchhHHHhcCCCCCCEEEEECCCCcEE-E
Confidence 4 7888888888999999999999999999999998 5
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.5e-20 Score=165.15 Aligned_cols=139 Identities=25% Similarity=0.386 Sum_probs=115.6
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCC-hhHHHHHHh
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD-QTSFDEFFK 320 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~-~~~~~~~~~ 320 (477)
+...|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|++++++|+++ +++|++|++|.+ .+.+++|++
T Consensus 37 g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~--~~~vv~v~~d~~~~~~~~~~~~ 114 (186)
T 1jfu_A 37 PLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGP--NFEVVAINIDTRDPEKPKTFLK 114 (186)
T ss_dssp CCBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBT--TEEEEEEECCCSCTTHHHHHHH
T ss_pred CCcCCCcEeEcCCCCEeeHHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccC--CcEEEEEECCCCCHHHHHHHHH
Confidence 445699999 9999999999999999999999999999999999999999999854 699999999964 568899999
Q ss_pred cCCCceeccCcchhHHHHHhcCCC----CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcC
Q 011791 321 GMPWLALPFGDARKASLSRKFKVS----GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKG 395 (477)
Q Consensus 321 ~~~~~~~p~~~d~~~~l~~~~~v~----~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 395 (477)
+++...+|+..|....+.+.|++. ++|+++|||++|+|+.+. .|.. ..+ .+++.+.|++++++
T Consensus 115 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~-------~g~~--~~~---~~~l~~~l~~ll~~ 181 (186)
T 1jfu_A 115 EANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATI-------AGPA--EWA---SEDALKLIRAATGK 181 (186)
T ss_dssp HTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEE-------ESCC--CTT---SHHHHHHHHHHHC-
T ss_pred HcCCCCCceEECCcchHHHHhccccccCCCCEEEEECCCCCEEEEE-------ecCC--ccC---HHHHHHHHHHHhcc
Confidence 988667888888888899999986 999999999999999874 2321 111 25566777776654
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-20 Score=164.60 Aligned_cols=113 Identities=21% Similarity=0.389 Sum_probs=104.1
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC------------
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD------------ 309 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d------------ 309 (477)
+...|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|.+++++++ ++.|++|++|
T Consensus 14 g~~~p~~~l~~~~g~~~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~----~v~vv~i~~d~~~~~~~~~~~~ 89 (165)
T 3ha9_A 14 LEREASFSLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR----EISVIAIDFWTAEALKALGLNK 89 (165)
T ss_dssp HHHHHCCCEEBTTSCEECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT----TEEEEEEECCSHHHHHHHTCCS
T ss_pred cCcCCCCEeecCCCCEeeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC----CcEEEEEEeccccccccccccc
Confidence 444588998 99999999999999999999999999999999999999999987 4999999999
Q ss_pred ------CChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEE
Q 011791 310 ------RDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTIT 360 (477)
Q Consensus 310 ------~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~ 360 (477)
.+.+.+++|++++++.++|+..+ ...+.+.|+|.++|+++|||++|+++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~v~~~P~~~lid~~G~i~~ 145 (165)
T 3ha9_A 90 PGYPPPDTPEMFRKFIANYGDPSWIMVMD-DGSLVEKFNVRSIDYIVIMDKSSNVLY 145 (165)
T ss_dssp TTSCCCCCHHHHHHHHHHHSCTTSEEEEC-CSHHHHHTTCCSSSEEEEEETTCCEEE
T ss_pred ccCCCCCCHHHHHHHHHHcCCCCeeEEeC-hHHHHHHhCCCCceEEEEEcCCCcEEE
Confidence 78889999999988658888888 789999999999999999999999998
|
| >4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.9e-21 Score=170.00 Aligned_cols=139 Identities=20% Similarity=0.290 Sum_probs=116.8
Q ss_pred ccCCCccee-ccCCCceecccC--CCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHH
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDL--AGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 318 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~--~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~ 318 (477)
+...|+|.+ +.+|++++|+++ +||+++|+|| ++||++|+.++|.|++++++|+++ ++++++|+.| +.+..++|
T Consensus 8 G~~aPdF~l~~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~--~v~vv~is~d-~~~~~~~~ 84 (164)
T 4gqc_A 8 GEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKA--NAEVLAISVD-SPWCLKKF 84 (164)
T ss_dssp TSBCCCCEEEBTTSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGS--SSEEEEEESS-CHHHHHHH
T ss_pred CCCCcCcEeECCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhcc--CceEEEecCC-CHHHHHHH
Confidence 556799999 999999999998 8999999988 999999999999999999999876 7999999998 66788899
Q ss_pred HhcCCCceeccCcchhHHHHHhcCCC----------CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHH
Q 011791 319 FKGMPWLALPFGDARKASLSRKFKVS----------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQ 388 (477)
Q Consensus 319 ~~~~~~~~~p~~~d~~~~l~~~~~v~----------~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~ 388 (477)
.++++ ++||++.|.+..+++.|||. ..|++||||++|+|++.+. +.+ +..+.+.+++++.
T Consensus 85 ~~~~~-~~fp~l~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~-------~~~--~~~~~~~~eil~~ 154 (164)
T 4gqc_A 85 KDENR-LAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWV-------TDN--PLNEPDYDEVVRE 154 (164)
T ss_dssp HHHTT-CCSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEE-------CSC--TTCCCCHHHHHHH
T ss_pred HHhcC-cccceeecCchHHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEEEE-------eCC--CCCCCCHHHHHHH
Confidence 98887 68999999999999999984 4689999999999998742 211 2233346777777
Q ss_pred HHHHHc
Q 011791 389 YNEMAK 394 (477)
Q Consensus 389 ~~~~~~ 394 (477)
+++++.
T Consensus 155 l~~l~~ 160 (164)
T 4gqc_A 155 ANKIAG 160 (164)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777654
|
| >2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=164.44 Aligned_cols=144 Identities=10% Similarity=0.198 Sum_probs=116.4
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC-------CChhH
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQTS 314 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d-------~~~~~ 314 (477)
+...|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|++++++|+++ ++|++|++| .+.+.
T Consensus 10 g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~---~~~v~v~~d~~~~~~~d~~~~ 86 (188)
T 2cvb_A 10 ESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK---VAFVGINANDYEKYPEDAPEK 86 (188)
T ss_dssp TCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT---EEEEEEECCCTTTCGGGSHHH
T ss_pred CCCCCCceeecCCCCEEeHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcC---eEEEEEEcCccccccccCHHH
Confidence 445699999 9999999999999999999999999999999999999999999764 999999996 36678
Q ss_pred HHHHHhcCCCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhh-hcCCCCCCCCHHHHHHHHHHHHHHH
Q 011791 315 FDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIA-VHGAEAYPFTEERMKEIDGQYNEMA 393 (477)
Q Consensus 315 ~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~-~~g~~~~~~~~~~~~~l~~~~~~~~ 393 (477)
+++|+++++ +.+|+..|....+.+.|+|.++|+++|||++|+++.++..+... ..| +.+ .++|.+.|++++
T Consensus 87 ~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~g~~~~~~~~~g----~~~---~~~l~~~i~~ll 158 (188)
T 2cvb_A 87 MAAFAEEHG-IFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYHGRVNDNPKDPS----KVQ---SHDLEAAIEALL 158 (188)
T ss_dssp HHHHHHHHT-CCSCEEECSSSHHHHHTTCCEESEEEEECTTCBEEEEECSSSCTTCGG----GCC---CCHHHHHHHHHH
T ss_pred HHHHHHHhC-CCceEEECCcchHHHHcCCCCCCeEEEECCCCcEEEEEecCCcccccc----ccC---HHHHHHHHHHHH
Confidence 999999887 57888888888999999999999999999999999883211000 001 111 255777777777
Q ss_pred cCCc
Q 011791 394 KGWP 397 (477)
Q Consensus 394 ~~~~ 397 (477)
++.+
T Consensus 159 ~~~~ 162 (188)
T 2cvb_A 159 RGEE 162 (188)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 6543
|
| >3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.3e-20 Score=165.27 Aligned_cols=133 Identities=18% Similarity=0.174 Sum_probs=114.0
Q ss_pred CCccee-ccCCCceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCC
Q 011791 246 DLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 323 (477)
Q Consensus 246 ~p~f~l-~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~ 323 (477)
.|+|.+ +.+|+++++++++||++||+|| ++||++|..++|.|++++++|+++ +++|++|+.| +.+..++|+++++
T Consensus 31 aP~f~l~~~~G~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~--~~~vv~Vs~D-~~~~~~~~~~~~~ 107 (179)
T 3ixr_A 31 LLNHPLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQI--NATVLGVSRD-SVKSHDSFCAKQG 107 (179)
T ss_dssp HHHCCEEEGGGEEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTT--TEEEEEEESC-CHHHHHHHHHHHT
T ss_pred CCCeeEECCCCCEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEcCC-CHHHHHHHHHHcC
Confidence 589999 9999999999999999999999 999999999999999999999876 7999999998 5677889998876
Q ss_pred CceeccCcchhHHHHHhcCCCC------------cceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHH
Q 011791 324 WLALPFGDARKASLSRKFKVSG------------IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNE 391 (477)
Q Consensus 324 ~~~~p~~~d~~~~l~~~~~v~~------------~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~ 391 (477)
+.+|++.|....+++.|++.. +|+++|||++|+|+.... + ......++++++.+++
T Consensus 108 -~~f~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~~~-------~----~~~~~~~~~il~~l~~ 175 (179)
T 3ixr_A 108 -FTFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEAWR-------Q----VKVPGHAEEVLNKLKA 175 (179)
T ss_dssp -CCSCEEECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEEEC-------S----CCSTTHHHHHHHHHHH
T ss_pred -CceEEEECCchHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEEEc-------C----CCCCCCHHHHHHHHHH
Confidence 678888888889999999964 689999999999998741 2 1234566778888776
Q ss_pred HH
Q 011791 392 MA 393 (477)
Q Consensus 392 ~~ 393 (477)
+.
T Consensus 176 l~ 177 (179)
T 3ixr_A 176 HA 177 (179)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-19 Score=156.48 Aligned_cols=121 Identities=23% Similarity=0.360 Sum_probs=106.8
Q ss_pred hccCcCCCce-ecCCCCeEecC--CCCCCEEEEEEecCCCccchhhHHHHHHHHHHH-hcCCCcEEEEEEEcCCCHHHHH
Q 011791 81 VLTSHSRDFV-ISSDGRKISVS--DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKL-KGKGESFEIVLISLDDEEESFK 156 (477)
Q Consensus 81 ~~g~~~p~fl-~~~~g~~v~ls--~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~-~~~g~~~~vv~is~D~~~~~~~ 156 (477)
.+|.++|+|. .+.+|+.++++ +++||+++|+||++||++|+.++|.|.+++++| ++++ +.+++|++|.+.+.+.
T Consensus 6 ~~g~~~p~~~l~~~~g~~~~l~~~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~--~~~v~v~~d~~~~~~~ 83 (148)
T 3fkf_A 6 TVGKSAPYFSLPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKN--FAMLGISLDIDREAWE 83 (148)
T ss_dssp CTTSBCCCCCEEBTTSCEECTTSTTTTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTT--EEEEEEECCSCHHHHH
T ss_pred cCCCcCCCeEeeCCCCCEEeccccccCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCC--eEEEEEECCCCHHHHH
Confidence 4688999995 48999999999 999999999999999999999999999999999 7766 9999999999998999
Q ss_pred HhhcC--CCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 157 RDLGS--MPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 157 ~~~~~--~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
++++. ++|..+....+....+++.|++.++|+++++|++|+++....
T Consensus 84 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 132 (148)
T 3fkf_A 84 TAIKKDTLSWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILARDI 132 (148)
T ss_dssp HHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEESC
T ss_pred HHHHHcCCCceEEEccCCcchHHHHhcCCCCcCEEEEECCCCeEEEecC
Confidence 88885 466666555444667899999999999999999999987753
|
| >2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-19 Score=158.80 Aligned_cols=135 Identities=22% Similarity=0.346 Sum_probs=110.8
Q ss_pred CCccee-ccCCCceecccCCCCEEEEEEeCCCChh-hHhHhHHHHHHHHHHHhc--CCcEEEEEEeCCC---ChhHHHHH
Q 011791 246 DLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPP-CRAFLPKLIDAYKKIKER--NESLEVVFISSDR---DQTSFDEF 318 (477)
Q Consensus 246 ~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~-C~~~~p~l~~l~~~~~~~--~~~~~iv~i~~d~---~~~~~~~~ 318 (477)
.|+|.+ +.+|+++++++++||++||+||++||++ |+.++|.|+++++++++. ..+++|++|++|. +.+.+++|
T Consensus 3 ap~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~ 82 (164)
T 2ggt_A 3 GGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANY 82 (164)
T ss_dssp CCCCEEEETTSCEEEGGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHH
T ss_pred CCCeEEEeCCCCEEeHHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHH
Confidence 488999 9999999999999999999999999998 999999999999999862 1369999999986 36789999
Q ss_pred HhcCCCceeccC---cchhHHHHHhcCCCCcc---------------eEEEECCCCcEEEeccchhhhhcCCCCCCCCHH
Q 011791 319 FKGMPWLALPFG---DARKASLSRKFKVSGIP---------------MLVAIGPSGRTITKEARDMIAVHGAEAYPFTEE 380 (477)
Q Consensus 319 ~~~~~~~~~p~~---~d~~~~l~~~~~v~~~P---------------t~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~ 380 (477)
+++++ ..++++ .+....+.+.|+|.++| +++|||++|+++.+.. | ..+.
T Consensus 83 ~~~~~-~~~~~l~~~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~-------g----~~~~- 149 (164)
T 2ggt_A 83 VKEFS-PKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFG-------Q----NKRK- 149 (164)
T ss_dssp HHTTC-SSCEEEECCHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEE-------T----TCCH-
T ss_pred HHHcC-CCeEEEeCCHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeC-------C----CCCH-
Confidence 99876 445554 45566799999999999 8999999999998743 2 1222
Q ss_pred HHHHHHHHHHHHHcC
Q 011791 381 RMKEIDGQYNEMAKG 395 (477)
Q Consensus 381 ~~~~l~~~~~~~~~~ 395 (477)
++|.+.|+++++.
T Consensus 150 --~~l~~~l~~ll~~ 162 (164)
T 2ggt_A 150 --GEIAASIATHMRP 162 (164)
T ss_dssp --HHHHHHHHHHHGG
T ss_pred --HHHHHHHHHHHHh
Confidence 5667777776653
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-19 Score=155.43 Aligned_cols=135 Identities=18% Similarity=0.224 Sum_probs=113.4
Q ss_pred ccCCCccee---ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC-----ChhH
Q 011791 243 VSGDLDFVV---GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-----DQTS 314 (477)
Q Consensus 243 ~~~~p~f~l---~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~-----~~~~ 314 (477)
+...|+|.+ +.+|+.+++++++||+++|+||++||++|+.+.|.|++++++++++ +.+++|++|. +.+.
T Consensus 4 g~~~P~f~~~~~~~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~v~~~~~~~~~~~~~ 80 (148)
T 2b5x_A 4 RQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ---LNVVAVHMPRSEDDLDPGK 80 (148)
T ss_dssp TCBCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEECCCSTTTSSHHH
T ss_pred CCCCCCCccccccccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCC---cEEEEEEcCCCccccCHHH
Confidence 345688876 6899999999999999999999999999999999999999999764 8999999876 6788
Q ss_pred HHHHHhcCCCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHc
Q 011791 315 FDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAK 394 (477)
Q Consensus 315 ~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 394 (477)
+++|+++++ +.+|+..+....+.+.|+|.++|++++||++|+++.+. .|. .+ .++|.+.++++++
T Consensus 81 ~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~-------~g~----~~---~~~l~~~l~~~l~ 145 (148)
T 2b5x_A 81 IKETAAEHD-ITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQ-------AGG----SG---MKMLEKRVNRVLA 145 (148)
T ss_dssp HHHHHHHTT-CCSCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEE-------ESC----ST---THHHHHHHHHHHT
T ss_pred HHHHHHHcC-CCcceEECCchhHHHHhCCCCCCEEEEECCCCcEEEEe-------cCC----CC---HHHHHHHHHHHHh
Confidence 999999887 57888888888899999999999999999999999873 231 12 2556667776665
Q ss_pred C
Q 011791 395 G 395 (477)
Q Consensus 395 ~ 395 (477)
.
T Consensus 146 ~ 146 (148)
T 2b5x_A 146 E 146 (148)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-19 Score=156.01 Aligned_cols=135 Identities=21% Similarity=0.335 Sum_probs=113.4
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeC--CCChhHHHHHH
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS--DRDQTSFDEFF 319 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~--d~~~~~~~~~~ 319 (477)
+...|+|.+ +.+|+.+++++++ |++||+||++||++|+.++|.|.++++++ ++.+++|++ +.+.+.+++|+
T Consensus 8 g~~~p~f~l~~~~g~~~~l~~~~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~-----~v~~v~v~~d~~~~~~~~~~~~ 81 (154)
T 3ia1_A 8 GEPLPDFLLLDPKGQPVTPATVS-KPAVIVFWASWCTVCKAEFPGLHRVAEET-----GVPFYVISREPRDTREVVLEYM 81 (154)
T ss_dssp BEECCCCCEECTTSCEECTTTSC-SSEEEEEECTTCHHHHHHHHHHHHHHHHH-----CCCEEEEECCTTCCHHHHHHHH
T ss_pred CCcCCceEEECCCCCEechHHcC-CeEEEEEEcccChhHHHHHHHHHHHHHHc-----CCeEEEEeCCCcccHHHHHHHH
Confidence 445699999 9999999999999 99999999999999999999999999998 388999999 56788999999
Q ss_pred hcCCCceeccCcc---hhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCC
Q 011791 320 KGMPWLALPFGDA---RKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGW 396 (477)
Q Consensus 320 ~~~~~~~~p~~~d---~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 396 (477)
++++ +.+|+..+ ....+.+.|+|.++|+++|||++|+++.+.. |. .+ .++|.+.|+++....
T Consensus 82 ~~~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~-------g~----~~---~~~l~~~l~~~~~~~ 146 (154)
T 3ia1_A 82 KTYP-RFIPLLASDRDRPHEVAARFKVLGQPWTFVVDREGKVVALFA-------GR----AG---REALLDALLLAGADL 146 (154)
T ss_dssp TTCT-TEEECBCCSSCCHHHHHTTSSBCSSCEEEEECTTSEEEEEEE-------SB----CC---HHHHHHHHHHTTCCC
T ss_pred HHcC-CCcccccccccchHHHHHHhCCCcccEEEEECCCCCEEEEEc-------CC----CC---HHHHHHHHHhccCcc
Confidence 9998 47888776 7889999999999999999999999998742 31 22 356777777766554
Q ss_pred ch
Q 011791 397 PE 398 (477)
Q Consensus 397 ~~ 398 (477)
+.
T Consensus 147 ~~ 148 (154)
T 3ia1_A 147 EG 148 (154)
T ss_dssp --
T ss_pred cc
Confidence 43
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.6e-20 Score=158.11 Aligned_cols=121 Identities=15% Similarity=0.257 Sum_probs=102.8
Q ss_pred hccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhh
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 159 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~ 159 (477)
.+|.++|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.++++++++++ +.+++|++|.+.+.+++++
T Consensus 6 ~~G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~v~v~~d~~~~~~~~~~ 83 (148)
T 3hcz_A 6 LLGKKAPNLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKG--IQVYAANIERKDEEWLKFI 83 (148)
T ss_dssp CTTSBCCCCCCBCTTSCBCCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGT--EEEEEEECCSSSHHHHHHH
T ss_pred CCCCcCCceEEecCCCCEEEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCC--EEEEEEEecCCHHHHHHHH
Confidence 46899999954 89999999999999999999999999999999999999999999887 9999999998888899888
Q ss_pred cCCCCccccCCchhHHH--HHHHcCcccCCeEEEECCCCCccccch
Q 011791 160 GSMPWLALPFKDKSREK--LARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 160 ~~~~~~~~~~~~~~~~~--l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
+.+++..++...+.... +.+.|++.++|+++|+|++|+++.+..
T Consensus 84 ~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~ 129 (148)
T 3hcz_A 84 RSKKIGGWLNVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRI 129 (148)
T ss_dssp HHHTCTTSEEEECTTCCCCHHHHHCCCSSCEEEEECTTCBEEEESC
T ss_pred HHcCCCCceEEeccccchhHHHhcCcCCCCEEEEECCCCcEEEecC
Confidence 86542222222222223 889999999999999999999988753
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-21 Score=166.96 Aligned_cols=120 Identities=34% Similarity=0.727 Sum_probs=107.0
Q ss_pred CCccee-ccCCCceeccc-CCCC-EEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcC
Q 011791 246 DLDFVV-GKNGGKVPVSD-LAGK-TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 322 (477)
Q Consensus 246 ~p~f~l-~~~g~~~~l~~-~~gk-~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~ 322 (477)
.|+|.+ +.+|+.+++++ ++|| ++||+||++||++|+.+.|.|+++++++++...++.+++|++|.+.+.+++|++++
T Consensus 4 ~p~~~l~~~~g~~~~l~~~~~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~ 83 (143)
T 2lus_A 4 IQGIKLVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMES 83 (143)
Confidence 378888 99999999999 9999 99999999999999999999999999996544479999999998888899999877
Q ss_pred --CCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEeccch
Q 011791 323 --PWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARD 365 (477)
Q Consensus 323 --~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~ 365 (477)
+|..+++..+....+++.|+|.++|++++||++|+++.++++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~ 128 (143)
T 2lus_A 84 HGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGRG 128 (143)
Confidence 5677777777778899999999999999999999999987644
|
| >3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A | Back alignment and structure |
|---|
Probab=99.80 E-value=9.6e-20 Score=165.25 Aligned_cols=136 Identities=17% Similarity=0.201 Sum_probs=105.1
Q ss_pred cCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC-------CChhHH
Q 011791 244 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQTSF 315 (477)
Q Consensus 244 ~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d-------~~~~~~ 315 (477)
...|+|.+ +.+|+++++++++||+|||+|||+||++|+.++|.|++++++|+++ +++||+|++| .+.+++
T Consensus 24 ~~~p~f~l~d~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~--~~~vi~is~d~~~~~e~~~~~~~ 101 (187)
T 3dwv_A 24 SSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ--GFTVLAFPSNQFGGQEPGNEEEI 101 (187)
T ss_dssp CSGGGSCCBBTTSCBCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGG--TCEEEEEEBCCCSSCSSSBTTHH
T ss_pred CccCCeEEEcCCCCEeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhC--CeEEEEEECcccCCCCCCCHHHH
Confidence 34589999 9999999999999999999999999999999999999999999987 6999999998 356788
Q ss_pred HHHHhcCCCceeccCc--chhHH----HH--------HhcCCCCcc---eEEEECCCCcEEEeccchhhhhcCCCCCCCC
Q 011791 316 DEFFKGMPWLALPFGD--ARKAS----LS--------RKFKVSGIP---MLVAIGPSGRTITKEARDMIAVHGAEAYPFT 378 (477)
Q Consensus 316 ~~~~~~~~~~~~p~~~--d~~~~----l~--------~~~~v~~~P---t~~lid~~G~iv~~~~~~~~~~~g~~~~~~~ 378 (477)
++|+++.-.+.+|+.. |.... +. ..+++.++| +++|||++|+|+.+.. | ..+
T Consensus 102 ~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~-------g----~~~ 170 (187)
T 3dwv_A 102 KEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFS-------P----GAS 170 (187)
T ss_dssp HHSCCBCCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEEC-------T----TCC
T ss_pred HHHHHhccCCCCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEEC-------C----CCC
Confidence 8998854225666653 22211 11 445677888 9999999999998843 2 122
Q ss_pred HHHHHHHHHHHHHHHcC
Q 011791 379 EERMKEIDGQYNEMAKG 395 (477)
Q Consensus 379 ~~~~~~l~~~~~~~~~~ 395 (477)
. ++|.+.|++++++
T Consensus 171 ~---~~l~~~i~~lL~~ 184 (187)
T 3dwv_A 171 V---KDIEEKLIPLLGS 184 (187)
T ss_dssp H---HHHHHHHHHHC--
T ss_pred H---HHHHHHHHHHHhc
Confidence 3 4567777777654
|
| >1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-19 Score=160.06 Aligned_cols=136 Identities=16% Similarity=0.188 Sum_probs=113.4
Q ss_pred hccCCCccee-ccCCCceecccCCCC-EEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHH
Q 011791 242 LVSGDLDFVV-GKNGGKVPVSDLAGK-TILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 318 (477)
Q Consensus 242 ~~~~~p~f~l-~~~g~~~~l~~~~gk-~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~ 318 (477)
.+...|+|.+ +.+|+.+++++++|| ++||+|| ++||++|+.++|.|.+++++|+++ +++|++|++| +.+.+++|
T Consensus 11 ~G~~~p~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~--~~~vv~is~d-~~~~~~~~ 87 (160)
T 1xvw_A 11 VGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEND--DSAALAISVG-PPPTHKIW 87 (160)
T ss_dssp TTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSS--SEEEEEEESC-CHHHHHHH
T ss_pred CCCCCCCeEeEcCCCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC--CcEEEEEeCC-CHHHHHHH
Confidence 3455699999 999999999999998 9999998 999999999999999999999764 6999999998 56789999
Q ss_pred HhcCCCceeccCcch--hHHHHHhcCCC----Ccc--eEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHH
Q 011791 319 FKGMPWLALPFGDAR--KASLSRKFKVS----GIP--MLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYN 390 (477)
Q Consensus 319 ~~~~~~~~~p~~~d~--~~~l~~~~~v~----~~P--t~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~ 390 (477)
++++++ .+|+..|. ...+.+.|++. ++| +++|||++|+|+.+.. |.. ..+..++++++.++
T Consensus 88 ~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~~~-------g~~---~~~~~~~~l~~~l~ 156 (160)
T 1xvw_A 88 ATQSGF-TFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEM-------KQP---GEVRDQRLWTDALA 156 (160)
T ss_dssp HHHHTC-CSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEE-------CCT---TCCCCHHHHHHHHH
T ss_pred HHhcCC-CceEEecCCcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEEEe-------cCC---CCCCCHHHHHHHHH
Confidence 998884 78888774 78899999998 999 9999999999998843 211 11224566666665
Q ss_pred H
Q 011791 391 E 391 (477)
Q Consensus 391 ~ 391 (477)
+
T Consensus 157 ~ 157 (160)
T 1xvw_A 157 A 157 (160)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-19 Score=158.71 Aligned_cols=118 Identities=21% Similarity=0.243 Sum_probs=102.1
Q ss_pred ccCcCCCcee-cCCCCeEecCCCCCCE-EEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHh
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDLEGKT-IGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 158 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l~gk~-vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~ 158 (477)
+|.++|+|.+ +.+|+.+++++++||+ ++|+|| ++||++|+.++|.|.+++++|+++| ++||+|+.| +.+.++++
T Consensus 4 ~G~~~P~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~vs~d-~~~~~~~~ 80 (161)
T 3drn_A 4 VGDKAPLFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYD--VVVIGVSSD-DINSHKRF 80 (161)
T ss_dssp TTSBCCCCEEEETTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTC--EEEEEEESC-CHHHHHHH
T ss_pred CCCcCCCeEeecCCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcC--CEEEEEeCC-CHHHHHHH
Confidence 6889999954 9999999999999997 999999 9999999999999999999999887 999999998 57788888
Q ss_pred hcCCCCccccCCchhHHHHHHHcCccc----CCeEEEECCCCCccccch
Q 011791 159 LGSMPWLALPFKDKSREKLARYFELST----LPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~v~~----~P~~~lid~~G~i~~~~~ 203 (477)
++++.+ .++...+....+.+.|++.+ +|+++|||++|+++....
T Consensus 81 ~~~~~~-~~~~~~d~~~~~~~~~~v~~~~~~~P~~~lid~~G~i~~~~~ 128 (161)
T 3drn_A 81 KEKYKL-PFILVSDPDKKIRELYGAKGFILPARITFVIDKKGIIRHIYN 128 (161)
T ss_dssp HHHTTC-CSEEEECTTSHHHHHTTCCCSSSCCCEEEEECTTSBEEEEEE
T ss_pred HHHhCC-CceEEECCcHHHHHHcCCCCcCcccceEEEECCCCEEEEEEe
Confidence 886542 23333344567899999999 999999999999987754
|
| >1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.7e-19 Score=158.91 Aligned_cols=139 Identities=20% Similarity=0.319 Sum_probs=110.2
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCCCCh-hhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC---CChhHHHH
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCP-PCRAFLPKLIDAYKKIKERNESLEVVFISSD---RDQTSFDE 317 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d---~~~~~~~~ 317 (477)
+...|+|.+ +.+|+.+++++++||++||+||++||+ +|+.++|.|.+++++|++++.+++||+|++| .+.+.+++
T Consensus 10 g~~~p~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~ 89 (174)
T 1xzo_A 10 NYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKK 89 (174)
T ss_dssp CEECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHH
T ss_pred ccccCCcEEEcCCCCEEehhhcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHH
Confidence 445699999 999999999999999999999999999 9999999999999999976445999999998 35778999
Q ss_pred HHhcCCCcee---ccCcchhHHHHHh----------------cCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCC
Q 011791 318 FFKGMPWLAL---PFGDARKASLSRK----------------FKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFT 378 (477)
Q Consensus 318 ~~~~~~~~~~---p~~~d~~~~l~~~----------------~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~ 378 (477)
|+++++ +.+ +++.+.+..+.+. |++..+|+++|||++|+|+.+. .|...
T Consensus 90 ~~~~~~-~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~-------~g~~~---- 157 (174)
T 1xzo_A 90 FAANYP-LSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDY-------NGVEN---- 157 (174)
T ss_dssp HHTTSC-CCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEE-------ESSSS----
T ss_pred HHHHcC-CCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEE-------cCCCC----
Confidence 999887 344 6666644444443 3567899999999999999874 23221
Q ss_pred HHHHHHHHHHHHHHHc
Q 011791 379 EERMKEIDGQYNEMAK 394 (477)
Q Consensus 379 ~~~~~~l~~~~~~~~~ 394 (477)
...++|.+.|+++++
T Consensus 158 -~~~~~l~~~l~~ll~ 172 (174)
T 1xzo_A 158 -TPYDDIISDVKSAST 172 (174)
T ss_dssp -CCHHHHHHHHHHHTC
T ss_pred -CCHHHHHHHHHHHHh
Confidence 123567777777664
|
| >2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-18 Score=152.83 Aligned_cols=115 Identities=22% Similarity=0.353 Sum_probs=99.3
Q ss_pred Cccee-ccCCCceecccCCCCEEEEEEeCCCChh-hHhHhHHHHHHHHHHHhc--CCcEEEEEEeCCC---ChhHHHHHH
Q 011791 247 LDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPP-CRAFLPKLIDAYKKIKER--NESLEVVFISSDR---DQTSFDEFF 319 (477)
Q Consensus 247 p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~-C~~~~p~l~~l~~~~~~~--~~~~~iv~i~~d~---~~~~~~~~~ 319 (477)
|+|.+ +.+|+.+++++++||++||+||++||++ |+.++|.|++++++|++. ..+++||+|++|. +.+.+++|+
T Consensus 7 p~f~l~~~~G~~~~l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~ 86 (171)
T 2rli_A 7 GDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYV 86 (171)
T ss_dssp SCCEEEETTSCEEETTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHH
T ss_pred CCeEEEeCCCCEEeHHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHH
Confidence 88999 9999999999999999999999999998 999999999999999752 2379999999984 467899999
Q ss_pred hcCCCceeccCc---chhHHHHHhcCCCCcc---------------eEEEECCCCcEEEec
Q 011791 320 KGMPWLALPFGD---ARKASLSRKFKVSGIP---------------MLVAIGPSGRTITKE 362 (477)
Q Consensus 320 ~~~~~~~~p~~~---d~~~~l~~~~~v~~~P---------------t~~lid~~G~iv~~~ 362 (477)
++++ ..++++. +....+.+.|+|..+| +++|||++|+++.+.
T Consensus 87 ~~~~-~~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 146 (171)
T 2rli_A 87 QDFH-PRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYY 146 (171)
T ss_dssp HTTC-TTCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEE
T ss_pred HHcC-CCeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEE
Confidence 9876 3455543 3445789999999988 999999999999874
|
| >2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.7e-19 Score=163.81 Aligned_cols=118 Identities=17% Similarity=0.201 Sum_probs=104.7
Q ss_pred hccCCCccee-cc--CC--CceecccC-CCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhH
Q 011791 242 LVSGDLDFVV-GK--NG--GKVPVSDL-AGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTS 314 (477)
Q Consensus 242 ~~~~~p~f~l-~~--~g--~~~~l~~~-~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~ 314 (477)
++...|+|.+ +. +| ++++++++ +||++||+|| ++||++|+.++|.|++++++|+++ +++||+|++| +.+.
T Consensus 27 ~G~~aP~F~l~~~~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~--~v~vv~Is~D-~~~~ 103 (221)
T 2c0d_A 27 VTKKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENK--NVELLGISVD-SVYS 103 (221)
T ss_dssp TTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHT--TEEEEEEESS-CHHH
T ss_pred CCCCCCCeEEeccccCCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEeCC-CHHH
Confidence 3556799999 87 89 99999999 9999999999 999999999999999999999875 7999999998 5567
Q ss_pred HHHHHhcCC------CceeccCcchhHHHHHhcCC-----CCcceEEEECCCCcEEEec
Q 011791 315 FDEFFKGMP------WLALPFGDARKASLSRKFKV-----SGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 315 ~~~~~~~~~------~~~~p~~~d~~~~l~~~~~v-----~~~Pt~~lid~~G~iv~~~ 362 (477)
.++|++++. .+.+|++.|....+++.|++ ..+|+++|||++|+|+...
T Consensus 104 ~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~P~~~lID~~G~I~~~~ 162 (221)
T 2c0d_A 104 HLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVLYDNSFALRGLFIIDKNGCVRHQT 162 (221)
T ss_dssp HHHHHHSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHHHHhhhhcCccCCceEEEECCchHHHHHcCCcccCCCccceEEEECCCCeEEEEE
Confidence 888988771 36788888888899999999 4799999999999999984
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.7e-19 Score=157.16 Aligned_cols=111 Identities=20% Similarity=0.345 Sum_probs=99.2
Q ss_pred ee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC-----ChhHHHHHHhcCC
Q 011791 250 VV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-----DQTSFDEFFKGMP 323 (477)
Q Consensus 250 ~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~-----~~~~~~~~~~~~~ 323 (477)
.+ +.+|+.+++++++||++||+||++||++|+.+.|.|++++++|+.+ +++||+|++|. +.+.+++|++.++
T Consensus 22 ~l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~~~~~ 99 (164)
T 2h30_A 22 TMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFS--SANLITVASPGFLHEKKDGEFQKWYAGLN 99 (164)
T ss_dssp TCEETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGT--TSEEEEEECTTSTTCCCTTHHHHHHTTSC
T ss_pred ccCCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC--CcEEEEEEcCCCccccCHHHHHHHHHhCC
Confidence 44 8899999999999999999999999999999999999999999765 69999999853 4568899998887
Q ss_pred CceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEec
Q 011791 324 WLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 324 ~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
+..+++..+....+++.|+|.++|+++|||++|+++.+.
T Consensus 100 ~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 138 (164)
T 2h30_A 100 YPKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRIV 138 (164)
T ss_dssp CTTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEE
T ss_pred CCcceEEEcCchHHHHHcCCCccceEEEECCCCcEEEEE
Confidence 666788778888999999999999999999999999873
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-19 Score=158.11 Aligned_cols=114 Identities=19% Similarity=0.419 Sum_probs=101.6
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhc
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 321 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~ 321 (477)
+...|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|.++++++++. ++.++.|++|. .+++++++
T Consensus 18 G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~--~~~~v~v~~d~---~~~~~~~~ 92 (158)
T 3hdc_A 18 GALAPNFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKG--DLVVLAVNVEK---RFPEKYRR 92 (158)
T ss_dssp TSBCCCCEEECTTSCEEESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTT--SEEEEEEECSS---SCCGGGGG
T ss_pred CCcCCCceeEcCCCCEEehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccC--CeEEEEEeCCH---HHHHHHHH
Confidence 445699999 9999999999999999999999999999999999999999999854 69999999986 35566777
Q ss_pred CCCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEec
Q 011791 322 MPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 322 ~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
++ +.+|+..+....+.+.|+|.++|+++|||++|+++.+.
T Consensus 93 ~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 132 (158)
T 3hdc_A 93 AP-VSFNFLSDATGQVQQRYGANRLPDTFIVDRKGIIRQRV 132 (158)
T ss_dssp CC-CSCEEEECTTSHHHHHTTCCSSSEEEEECTTSBEEEEE
T ss_pred cC-CCceEEECchHHHHHHhCCCCcceEEEEcCCCCEEEEE
Confidence 66 56788888888999999999999999999999999884
|
| >2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.3e-19 Score=161.56 Aligned_cols=138 Identities=21% Similarity=0.235 Sum_probs=115.2
Q ss_pred ccCCCccee-cc--CC--CceecccC-CCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHH
Q 011791 243 VSGDLDFVV-GK--NG--GKVPVSDL-AGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSF 315 (477)
Q Consensus 243 ~~~~p~f~l-~~--~g--~~~~l~~~-~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~ 315 (477)
+...|+|.+ +. +| ++++++++ +||++||+|| ++||++|+.++|.|++++++|+++ +++||+|++| +.+..
T Consensus 3 G~~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~--~v~vv~Is~d-~~~~~ 79 (192)
T 2h01_A 3 QGQAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKER--NVELLGCSVD-SKFTH 79 (192)
T ss_dssp SSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHT--TEEEEEEESS-CHHHH
T ss_pred CCcCCCcEeEeeecCCceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEEeC-CHHHH
Confidence 345699999 77 89 89999999 9999999999 999999999999999999999875 6999999998 56788
Q ss_pred HHHHhcCC------CceeccCcchhHHHHHhcCCC-----CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHH
Q 011791 316 DEFFKGMP------WLALPFGDARKASLSRKFKVS-----GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKE 384 (477)
Q Consensus 316 ~~~~~~~~------~~~~p~~~d~~~~l~~~~~v~-----~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~ 384 (477)
++|.+.+. .+++|++.|....+.+.|++. .+|+++|||++|+|+.+.. |... ...+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~g~~~P~~~liD~~G~i~~~~~-------g~~~---~~~~~~~ 149 (192)
T 2h01_A 80 LAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVLIDKQGVVQHLLV-------NNLA---LGRSVDE 149 (192)
T ss_dssp HHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECCEEEEECTTSBEEEEEE-------GGGS---SGGGHHH
T ss_pred HHHHHhHHhhCCccCCCcCeEECCcHHHHHHhCCcCcCCceeeEEEEEcCCCEEEEEEe-------CCCC---CCCCHHH
Confidence 88888772 477888888888999999999 8999999999999998843 2111 1334566
Q ss_pred HHHHHHHHH
Q 011791 385 IDGQYNEMA 393 (477)
Q Consensus 385 l~~~~~~~~ 393 (477)
+++.|+++.
T Consensus 150 l~~~l~~l~ 158 (192)
T 2h01_A 150 ILRLIDALQ 158 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776654
|
| >1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.79 E-value=7.5e-19 Score=159.24 Aligned_cols=117 Identities=22% Similarity=0.289 Sum_probs=104.9
Q ss_pred ccCCCccee-ccCCC----ceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHH
Q 011791 243 VSGDLDFVV-GKNGG----KVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFD 316 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~----~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~ 316 (477)
+...|+|.+ +.+|+ ++++++++||++||+|| ++||++|+.++|.|++++++|+++ +++|++|++|. .+..+
T Consensus 4 G~~~P~f~l~~~~g~~~~~~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~--~v~vv~vs~d~-~~~~~ 80 (187)
T 1we0_A 4 GTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL--GVEVYSVSTDT-HFVHK 80 (187)
T ss_dssp TCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHT--TEEEEEEESSC-HHHHH
T ss_pred CCcCCCeEEeccCCCccceEecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHc--CCEEEEEECCC-HHHHH
Confidence 445699999 88999 99999999999999999 999999999999999999999875 69999999985 67788
Q ss_pred HHHhcCC---CceeccCcchhHHHHHhcCCC------CcceEEEECCCCcEEEec
Q 011791 317 EFFKGMP---WLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 317 ~~~~~~~---~~~~p~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~iv~~~ 362 (477)
+|.+.+. -+++|+..|....+.+.|++. ++|+++|||++|+|+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~~ 135 (187)
T 1we0_A 81 AWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIE 135 (187)
T ss_dssp HHHHSCHHHHTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHHhccccCCCceEEECCchHHHHHhCCCcCCCCceeeEEEEECCCCeEEEEE
Confidence 8988872 367888888788999999998 999999999999999984
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.9e-21 Score=167.77 Aligned_cols=117 Identities=26% Similarity=0.433 Sum_probs=104.1
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHH-HHHHHH-hcCCcEEEEEEeCCCChhHHHHHH
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLID-AYKKIK-ERNESLEVVFISSDRDQTSFDEFF 319 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~-l~~~~~-~~~~~~~iv~i~~d~~~~~~~~~~ 319 (477)
+...|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|.+ ++++++ .. ++.++.|++|.+.+.+++|.
T Consensus 10 g~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~--~~~vv~v~~d~~~~~~~~~~ 87 (159)
T 2ls5_A 10 GEMAPDFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNA--DFALIGIDRDEPLEKVLAFA 87 (159)
Confidence 344589998 99999999999999999999999999999999999998 988887 33 69999999997777888999
Q ss_pred hcCCCceeccCcchhHHHHHhcC--CCCcceEEEECCCCcEEEec
Q 011791 320 KGMPWLALPFGDARKASLSRKFK--VSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 320 ~~~~~~~~p~~~d~~~~l~~~~~--v~~~Pt~~lid~~G~iv~~~ 362 (477)
++++ +.+|+..|....+.+.|+ +.++|+++|||++|+++.+.
T Consensus 88 ~~~~-~~~~~~~d~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~ 131 (159)
T 2ls5_A 88 KSTG-VTYPLGLDPGADIFAKYALRDAGITRNVLIDREGKIVKLT 131 (159)
Confidence 8887 488998898899999999 56799999999999999873
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-18 Score=181.11 Aligned_cols=66 Identities=17% Similarity=0.221 Sum_probs=55.6
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++++++|+|||+||++|+.+.|.+.++.+.+++.+ +.++.|.++.+. .+++.|+|
T Consensus 30 ~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~--v~~~~vd~~~~~-----------------------~l~~~~~v 84 (504)
T 2b5e_A 30 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKN--ITLAQIDCTENQ-----------------------DLCMEHNI 84 (504)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTT--CEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred cCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCC--eEEEEEECCCCH-----------------------HHHHhcCC
Confidence 47899999999999999999999999999998764 788888776553 37788888
Q ss_pred ccCCeEEEECC
Q 011791 184 STLPTLVIIGP 194 (477)
Q Consensus 184 ~~~P~~~lid~ 194 (477)
.++|+++++..
T Consensus 85 ~~~Pt~~~~~~ 95 (504)
T 2b5e_A 85 PGFPSLKIFKN 95 (504)
T ss_dssp CSSSEEEEEET
T ss_pred CcCCEEEEEeC
Confidence 88888888753
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.2e-19 Score=153.05 Aligned_cols=117 Identities=13% Similarity=0.163 Sum_probs=96.6
Q ss_pred CcCCCceecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCC-
Q 011791 84 SHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSM- 162 (477)
Q Consensus 84 ~~~p~fl~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~- 162 (477)
.+.|+|....+|+.+++++++||+|+|+||++||++|+.++|.|.+++++|++.+ +.||+|++|. .+.+.++++..
T Consensus 3 ~pa~~~~~~~~G~~~~l~~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~--v~vv~v~~d~-~~~~~~~~~~~~ 79 (151)
T 3raz_A 3 LSADELAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGS--VDMVGIALDT-SDNIGNFLKQTP 79 (151)
T ss_dssp ----CEEETTTCCEECGGGCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTT--EEEEEEESSC-HHHHHHHHHHSC
T ss_pred CCcchhhcccCCCEecHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCC--eEEEEEECCC-hHHHHHHHHHcC
Confidence 3566666668999999999999999999999999999999999999999997766 9999999984 56677777754
Q ss_pred -CCccccCCchhHHHHHHHcC--cccCCeEEEECCCCCccccch
Q 011791 163 -PWLALPFKDKSREKLARYFE--LSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 163 -~~~~~~~~~~~~~~l~~~~~--v~~~P~~~lid~~G~i~~~~~ 203 (477)
+|..+.+.......+.+.|+ +.++|+++|+|++|+++.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 123 (151)
T 3raz_A 80 VSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTIT 123 (151)
T ss_dssp CSSCEEEECCSCHHHHHHTTTCCSCCSSEEEEEETTTTEEEECC
T ss_pred CCCceEecCccchHHHHHHhCCccCCCCEEEEECCCCcEEEEEC
Confidence 45555555555678999999 999999999999999987653
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.9e-19 Score=152.69 Aligned_cols=118 Identities=23% Similarity=0.358 Sum_probs=103.2
Q ss_pred ccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhc
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLG 160 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~ 160 (477)
+|.++|+|.+ + +|+.+++++++||+++|+||++||++|+.++|.|.+++++++++| +.+++|++|.+.+.+.+++.
T Consensus 5 ~G~~~P~f~l~~-~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~v~v~~d~~~~~~~~~~~ 81 (152)
T 3gl3_A 5 KGDKAPDFALPG-KTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKG--FQVVAVNLDAKTGDAMKFLA 81 (152)
T ss_dssp TTSBCCCCEEEB-SSSEEEGGGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGT--EEEEEEECCSSHHHHHHHHH
T ss_pred CCCcCCceEeeC-CCCeEeHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCC--eEEEEEECCCCHHHHHHHHH
Confidence 5889999965 7 999999999999999999999999999999999999999999887 99999999999888888888
Q ss_pred CCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 161 SMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
.+++ .++...+....+.+.|++.++|+++|+|++|+++.+..
T Consensus 82 ~~~~-~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 123 (152)
T 3gl3_A 82 QVPA-EFTVAFDPKGQTPRLYGVKGMPTSFLIDRNGKVLLQHV 123 (152)
T ss_dssp HSCC-CSEEEECTTCHHHHHTTCCSSSEEEEECTTSBEEEEEE
T ss_pred HcCC-CCceeECCcchhHHHcCCCCCCeEEEECCCCCEEEEEc
Confidence 7652 33333344456899999999999999999999988764
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-19 Score=159.36 Aligned_cols=123 Identities=10% Similarity=0.136 Sum_probs=100.4
Q ss_pred hhhccCcCCCcee-c-CCCCeEecCCCCCCEEEEEEecCCCccchhh-HHHHHHHHHHHhcCCCcEEEEEEEcC------
Q 011791 79 RSVLTSHSRDFVI-S-SDGRKISVSDLEGKTIGLYFSMSSYKASAEF-TPRLVEVYEKLKGKGESFEIVLISLD------ 149 (477)
Q Consensus 79 ~~~~g~~~p~fl~-~-~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~-~p~l~~l~~~~~~~g~~~~vv~is~D------ 149 (477)
+++.|.++|+|.+ + .+|+.+++++++||+|+|+||++||++|+.+ +|.|.+++++|++++ +.||+|++|
T Consensus 2 s~~~g~~~p~~~~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~--v~~v~v~~~~~~~~~ 79 (160)
T 3lor_A 2 SSLDNAPLLELDVQEWVNHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQ--VQVIGLHSVFEHHDV 79 (160)
T ss_dssp --CTTCCBCCCCEEEESSSCCCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTT--EEEEEEECCCSCGGG
T ss_pred cccCCCcCCCcccccccCCCccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCC--cEEEEEecccccccc
Confidence 3467899999955 5 7999999999999999999999999999995 999999999999877 999999984
Q ss_pred CCHHHHHHhhcCCC--CccccCCchh---HHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 150 DEEESFKRDLGSMP--WLALPFKDKS---REKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 150 ~~~~~~~~~~~~~~--~~~~~~~~~~---~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
++.+.++++++.+. |..+...... ...+.+.|++.++|+++|+|++|+++.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 138 (160)
T 3lor_A 80 MTPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQVQF 138 (160)
T ss_dssp SCHHHHHHHHHHTTCCSCEEEECCCTTCSSCHHHHHTTCCSSSEEEEECTTSBEEEEEE
T ss_pred CCHHHHHHHHHHcCCCCcEEECCccccchhhhHHHhcccCccceEEEECCCCcEEEEec
Confidence 67788888888654 3322222211 113889999999999999999999988753
|
| >2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-19 Score=162.13 Aligned_cols=144 Identities=13% Similarity=0.233 Sum_probs=116.1
Q ss_pred ccCCCccee--ccCCCceecccCCCC-EEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC-------CCh
Q 011791 243 VSGDLDFVV--GKNGGKVPVSDLAGK-TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQ 312 (477)
Q Consensus 243 ~~~~p~f~l--~~~g~~~~l~~~~gk-~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d-------~~~ 312 (477)
+...|+|.+ +.+|+.+++++++|| ++||+||++||++|+.++|.|++++++|+++ ++.|++|++| .+.
T Consensus 21 g~~~p~f~l~~~~~G~~~~l~~~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~v~~d~~~~~~~d~~ 98 (196)
T 2ywi_A 21 GKQAPPFALTNVIDGNVVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLANDYMPK--GVSFVAINSNDAEQYPEDSP 98 (196)
T ss_dssp TCBCCCCEEEETTTCCEEEHHHHCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGG--TCEEEEEECSCTTTCGGGSH
T ss_pred CCcCCceeeeecCCCCEEeHHHhCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhC--CcEEEEEECCccccccccCH
Confidence 345689987 689999999999998 5999999999999999999999999999876 6999999997 467
Q ss_pred hHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhh--hcCCCCCCCCHHHHHHHHHHHH
Q 011791 313 TSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIA--VHGAEAYPFTEERMKEIDGQYN 390 (477)
Q Consensus 313 ~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~--~~g~~~~~~~~~~~~~l~~~~~ 390 (477)
+.+++|+++++ +.+|+..|....+.+.|+|.++|+++|||++|+++.++..+... ..| +.+. ++|.+.|+
T Consensus 99 ~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g----~~~~---~~l~~~i~ 170 (196)
T 2ywi_A 99 ENMKKVAEELG-YPFPYLYDETQEVAKAYDAACTPDFYIFDRDLKCVYRGQLDDSRPNNGI----PVTG---ESIRAALD 170 (196)
T ss_dssp HHHHHHHHHHT-CCSCEEECSSCHHHHHHTCCEESEEEEEETTCBEEEEECSSSCCTTTCC----CCCC---HHHHHHHH
T ss_pred HHHHHHHHHcC-CCceEEECCchHHHHHhCCCCCCeEEEEcCCCeEEEccccCcccccccC----ccCH---HHHHHHHH
Confidence 78999999887 57888888888899999999999999999999999874311000 011 2222 55677777
Q ss_pred HHHcCC
Q 011791 391 EMAKGW 396 (477)
Q Consensus 391 ~~~~~~ 396 (477)
+++++.
T Consensus 171 ~ll~~~ 176 (196)
T 2ywi_A 171 ALLEGR 176 (196)
T ss_dssp HHHHTC
T ss_pred HHHcCC
Confidence 777653
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4.3e-19 Score=154.69 Aligned_cols=118 Identities=25% Similarity=0.437 Sum_probs=102.0
Q ss_pred ccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhc
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLG 160 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~ 160 (477)
+|.++|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.++++++++++ +.+++|++|.+.+.++++++
T Consensus 2 ~G~~~p~~~l~~~~g~~~~l~~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~v~~d~~~~~~~~~~~ 79 (151)
T 2f9s_A 2 EGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG--VEIVAVNVGESKIAVHNFMK 79 (151)
T ss_dssp CCEECCCCEEECTTCCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESCCHHHHHHHHH
T ss_pred CCCcCCcceeEcCCCCEEEHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEECCCCHHHHHHHHH
Confidence 4788999955 89999999999999999999999999999999999999999998866 99999999998888888888
Q ss_pred CCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccc
Q 011791 161 SMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 202 (477)
++.+ .++...+....+.+.|++.++|+++|+|++|+++...
T Consensus 80 ~~~~-~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 120 (151)
T 2f9s_A 80 SYGV-NFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVV 120 (151)
T ss_dssp HHTC-CSCEEEETTSHHHHHTTCCSSCEEEEECTTSEEEEEE
T ss_pred HcCC-CceEEECCchHHHHhcCCCCCCeEEEECCCCcEEEEE
Confidence 5542 2333334445688999999999999999999998765
|
| >1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.7e-19 Score=156.95 Aligned_cols=115 Identities=13% Similarity=0.113 Sum_probs=100.9
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeC-CCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHh
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSA-HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK 320 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~ 320 (477)
+...|+|.+ +.+|+++++++++||++||+||+ +||++|+.++|.|++++++| . +++|++|++| +.+..++|.+
T Consensus 19 G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~-~---~v~vv~is~d-~~~~~~~~~~ 93 (163)
T 1psq_A 19 GDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-D---NTVVLTVSMD-LPFAQKRWCG 93 (163)
T ss_dssp TSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-T---TEEEEEEESS-CHHHHHHHHH
T ss_pred CCCCCCEEEEcCCCcEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc-C---CcEEEEEECC-CHHHHHHHHH
Confidence 445699999 99999999999999999999995 99999999999999999988 3 6999999998 4677888998
Q ss_pred cCCCceeccCcc-hhHHHHHhcCCC----Cc--ceEEEECCCCcEEEec
Q 011791 321 GMPWLALPFGDA-RKASLSRKFKVS----GI--PMLVAIGPSGRTITKE 362 (477)
Q Consensus 321 ~~~~~~~p~~~d-~~~~l~~~~~v~----~~--Pt~~lid~~G~iv~~~ 362 (477)
+++..++|+..| ....+.+.|++. ++ |+++|||++|+|+...
T Consensus 94 ~~~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~ 142 (163)
T 1psq_A 94 AEGLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVE 142 (163)
T ss_dssp HHTCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEE
T ss_pred hcCCCCcEEecCCchhHHHHHhCCccccCCceEEEEEEEcCCCeEEEEE
Confidence 877327788888 778899999997 43 9999999999999984
|
| >2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-19 Score=159.45 Aligned_cols=137 Identities=15% Similarity=0.135 Sum_probs=112.4
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCCC-ChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHh
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHW-CPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK 320 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~ 320 (477)
+...|+|.+ +.+|+++++++++||++||+||++| |++|+.++|.|++++++| . +++|++|++| +.+..++|++
T Consensus 21 G~~~p~f~l~~~~G~~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-~---~~~vv~is~d-~~~~~~~~~~ 95 (167)
T 2jsy_A 21 GDQAPDFTVLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-G---DVNVYTISAD-LPFAQARWCG 95 (167)
T ss_dssp TSCCCCCEEEBTTCCEEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-S---SCEEEEEECS-SGGGTSCCGG
T ss_pred CCcCCceEEECCCCCEeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc-C---CCEEEEEECC-CHHHHHHHHH
Confidence 445699999 9999999999999999999999999 999999999999999999 3 5999999998 4567788888
Q ss_pred cCCCceeccCcc-hhHHHHHhcCCCC------cceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHH
Q 011791 321 GMPWLALPFGDA-RKASLSRKFKVSG------IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMA 393 (477)
Q Consensus 321 ~~~~~~~p~~~d-~~~~l~~~~~v~~------~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 393 (477)
++++..+|+..| ....+.+.|++.. +|+++|||++|+|+.+.. |.+. ....+.+++++.+++++
T Consensus 96 ~~~~~~~~~~~d~~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~~~-------g~~~--~~~~~~~~l~~~l~~ll 166 (167)
T 2jsy_A 96 ANGIDKVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVVYAEY-------VSEA--TNHPNYEKPIEAAKALV 166 (167)
T ss_dssp GSSCTTEEEEEGGGTCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEEEE-------CSBT--TSCCCSHHHHHHHHHHH
T ss_pred hcCCCCceEeeCCchhHHHHHhCCccccCCceeeEEEEEcCCCcEEEEEe-------cCCc--CCCCCHHHHHHHHHHhh
Confidence 887557888888 7788999999987 499999999999999853 2111 11222356777777665
|
| >3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.5e-19 Score=158.23 Aligned_cols=114 Identities=17% Similarity=0.272 Sum_probs=86.2
Q ss_pred CCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC-------CChhHHH
Q 011791 245 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQTSFD 316 (477)
Q Consensus 245 ~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d-------~~~~~~~ 316 (477)
..|+|.+ +.+|+++++++++||++||+|||+||++|+ ++|.|++++++|+++ +++|++|++| .+.+.++
T Consensus 11 ~~~~f~l~d~~G~~~~l~~~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~--~v~vv~vs~d~~~~~~~d~~~~~~ 87 (171)
T 3cmi_A 11 EFYKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKDE--GFTIIGFPCNQFGHQEPGSDEEIA 87 (171)
T ss_dssp GGGGCCCBBTTSCBCCGGGGTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGG--TEEEEEEEECSCC-----------
T ss_pred heeeeEEEcCCCCEecHHHcCCCEEEEEEEecCCCcch-hHHHHHHHHHHhccC--CeEEEEEECcccCCCCCCCHHHHH
Confidence 4588999 999999999999999999999999999999 999999999999876 6999999986 3456788
Q ss_pred HHH-hcCCCceeccCcchh--HH----H-----HHhcCCCCcc------eEEEECCCCcEEEec
Q 011791 317 EFF-KGMPWLALPFGDARK--AS----L-----SRKFKVSGIP------MLVAIGPSGRTITKE 362 (477)
Q Consensus 317 ~~~-~~~~~~~~p~~~d~~--~~----l-----~~~~~v~~~P------t~~lid~~G~iv~~~ 362 (477)
+|+ ++++ +.+|+..|.+ .. + .+.|++.++| +++|||++|+++.+.
T Consensus 88 ~~~~~~~~-~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~ 150 (171)
T 3cmi_A 88 QFCQLNYG-VTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERY 150 (171)
T ss_dssp -------C-CCSCBBCCCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEE
T ss_pred HHHHhccC-CCceEEeeccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEe
Confidence 888 6665 5677665321 11 1 2468999999 999999999999884
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.3e-19 Score=153.64 Aligned_cols=119 Identities=20% Similarity=0.330 Sum_probs=102.1
Q ss_pred ccCcCC-Ccee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhh
Q 011791 82 LTSHSR-DFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 159 (477)
Q Consensus 82 ~g~~~p-~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~ 159 (477)
+|.++| +|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.++++++++++ +.+++|++|.+.+.+.+++
T Consensus 5 ~G~~~p~~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~v~v~~d~~~~~~~~~~ 82 (152)
T 2lja_A 5 SGNPSAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKD--IHFVSLSCDKNKKAWENMV 82 (152)
T ss_dssp TTCCCSSSCEEEETTTEEEESTTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSS--EEEEEEECCSCHHHHHHHH
T ss_pred cCCCCCcccEeecCCCCEeeHHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCC--eEEEEEEccCcHHHHHHHH
Confidence 688999 9954 89999999999999999999999999999999999999999998766 9999999999888888888
Q ss_pred cCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccc
Q 011791 160 GSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 202 (477)
+...+...+...+....+.+.|++.++|+++|+|++|+++.+.
T Consensus 83 ~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 125 (152)
T 2lja_A 83 TKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRDGKIISAN 125 (152)
T ss_dssp HHHTCCSEEEECSSCTHHHHHTTCCSSCCEEEECTTSCEEESS
T ss_pred HhcCCCCceeecCcchhHHHHcCcCCCCEEEEECCCCeEEEcc
Confidence 7543322223233345688999999999999999999998865
|
| >1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-18 Score=158.27 Aligned_cols=117 Identities=16% Similarity=0.221 Sum_probs=103.0
Q ss_pred ccCCCccee-cc-CC--CceecccCCCCEEEEEEeC-CCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHH
Q 011791 243 VSGDLDFVV-GK-NG--GKVPVSDLAGKTILLYFSA-HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDE 317 (477)
Q Consensus 243 ~~~~p~f~l-~~-~g--~~~~l~~~~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~ 317 (477)
+...|+|.+ +. +| +++++++++||++||+||+ +||++|+.++|.|++++++|+++ +++||+|++| +.+..++
T Consensus 4 G~~aP~f~l~~~~~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~--~v~vv~Is~d-~~~~~~~ 80 (186)
T 1n8j_A 4 NTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKL--GVDVYSVSTD-THFTHKA 80 (186)
T ss_dssp TCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHT--TEEEEEEESS-CHHHHHH
T ss_pred CCcCCCcEeecccCCcceEEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHC--CCEEEEEECC-CHHHHHH
Confidence 456799999 77 58 8999999999999999995 99999999999999999999875 6999999998 4667888
Q ss_pred HHhcCC---CceeccCcchhHHHHHhcCCC------CcceEEEECCCCcEEEec
Q 011791 318 FFKGMP---WLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 318 ~~~~~~---~~~~p~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~iv~~~ 362 (477)
|+++++ -+++|++.|....+++.|++. .+|+++|||++|+|+...
T Consensus 81 ~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~i~~~~ 134 (186)
T 1n8j_A 81 WHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIE 134 (186)
T ss_dssp HHHHCTTGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHcCcccCCceeEEECCchHHHHHhCCccCCCCceeeEEEEECCCCeEEEEE
Confidence 998872 267788888888999999997 379999999999999884
|
| >2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.7e-19 Score=159.30 Aligned_cols=135 Identities=16% Similarity=0.226 Sum_probs=106.5
Q ss_pred cCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC-------ChhHH
Q 011791 244 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSF 315 (477)
Q Consensus 244 ~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~ 315 (477)
...|+|.+ +.+|+++++++++||++||+||++||++|+.++|.|++++++|+++ +++||+|++|. +.+.+
T Consensus 26 ~~~p~f~l~~~~G~~~~l~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d~~~~~~~~~~~~~ 103 (190)
T 2vup_A 26 SSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ--GFTVLAFPCNQFGGQEPGNEEEI 103 (190)
T ss_dssp CSGGGSCCBBTTSSBCCGGGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TCEEEEEECCCSTTCCCSCHHHH
T ss_pred CcccCeEEEcCCCCEEEHHHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcC--CeEEEEEEcCccCCCCCCCHHHH
Confidence 34589999 9999999999999999999999999999999999999999999876 69999999983 56788
Q ss_pred HHHH-hcCCCceeccCc--chhHH----HH-----HhcCCCCcc------eEEEECCCCcEEEeccchhhhhcCCCCCCC
Q 011791 316 DEFF-KGMPWLALPFGD--ARKAS----LS-----RKFKVSGIP------MLVAIGPSGRTITKEARDMIAVHGAEAYPF 377 (477)
Q Consensus 316 ~~~~-~~~~~~~~p~~~--d~~~~----l~-----~~~~v~~~P------t~~lid~~G~iv~~~~~~~~~~~g~~~~~~ 377 (477)
++|+ ++++ +.+|+.. |.... +. +.|++.++| +++|||++|+++.+.. | ..
T Consensus 104 ~~~~~~~~~-~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~-------g----~~ 171 (190)
T 2vup_A 104 KEFVCTKFK-AEFPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFS-------P----GA 171 (190)
T ss_dssp HHHHHHHHC-CCSCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEEC-------T----TC
T ss_pred HHHHHHhcC-CCeEEEeecccCcccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEEC-------C----CC
Confidence 8999 6665 4566653 22222 21 346899999 9999999999998742 2 12
Q ss_pred CHHHHHHHHHHHHHHHcC
Q 011791 378 TEERMKEIDGQYNEMAKG 395 (477)
Q Consensus 378 ~~~~~~~l~~~~~~~~~~ 395 (477)
+. ++|.+.|+++++.
T Consensus 172 ~~---~~l~~~i~~ll~~ 186 (190)
T 2vup_A 172 SV---KDIEKKLIPLLES 186 (190)
T ss_dssp CH---HHHHHHHHHHHHC
T ss_pred CH---HHHHHHHHHHHhh
Confidence 23 4566777776653
|
| >2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=154.52 Aligned_cols=117 Identities=18% Similarity=0.289 Sum_probs=95.9
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC-------ChhH
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTS 314 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~-------~~~~ 314 (477)
+...|+|.+ +.+|+++++++++||++||+||++||++|+.++|.|++++++|+++ +++|++|++|. +.+.
T Consensus 9 g~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~--~~~vv~vs~d~~~~~~~~~~~~ 86 (170)
T 2p5q_A 9 PESVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQ--GLEILAFPCNQFGEEEPGTNDQ 86 (170)
T ss_dssp -CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCTTTTCCCSCHHH
T ss_pred CccccceEEEcCCCCEecHHHhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhccC--CEEEEEEECCCCCCCCCCCHHH
Confidence 445689999 9999999999999999999999999999999999999999999876 69999999973 5678
Q ss_pred HHHHHh-cCCCceeccC--cchhHH----HH-----HhcCC--CCcc---eEEEECCCCcEEEec
Q 011791 315 FDEFFK-GMPWLALPFG--DARKAS----LS-----RKFKV--SGIP---MLVAIGPSGRTITKE 362 (477)
Q Consensus 315 ~~~~~~-~~~~~~~p~~--~d~~~~----l~-----~~~~v--~~~P---t~~lid~~G~iv~~~ 362 (477)
+++|++ +++ ..+|+. .|.... +. ..+++ .++| +++|||++|+++.+.
T Consensus 87 ~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~ 150 (170)
T 2p5q_A 87 ITDFVCTRFK-SEFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRY 150 (170)
T ss_dssp HHHHHHHHTC-CCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEE
T ss_pred HHHHHHHhcC-CCceeEeeeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEee
Confidence 899998 555 456665 233222 22 12467 7888 999999999999884
|
| >2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-18 Score=158.04 Aligned_cols=115 Identities=17% Similarity=0.181 Sum_probs=92.6
Q ss_pred CCCccee-ccC-CCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC-------ChhHH
Q 011791 245 GDLDFVV-GKN-GGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSF 315 (477)
Q Consensus 245 ~~p~f~l-~~~-g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~ 315 (477)
..|+|.+ +.+ |+.+++++++||+|||+|||+||++|++++|.|++++++|+++ +++||+|++|. +.+++
T Consensus 25 ~~p~f~l~~~~~G~~v~l~~~~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~--g~~vv~v~~d~~~~~e~d~~~~i 102 (208)
T 2f8a_A 25 SVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPR--GLVVLGFPCNQFGHQENAKNEEI 102 (208)
T ss_dssp CGGGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCCSTTTTCSCHHHH
T ss_pred ccCceEeeeCCCCCCccHHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHccCC--CeEEEEEECCcccccCCCCHHHH
Confidence 4589999 999 9999999999999999999999999999999999999999876 69999999872 35778
Q ss_pred HHHHh------cCCCceeccCcchh----------HHHHHhc-------------------------CCCCcceEEEECC
Q 011791 316 DEFFK------GMPWLALPFGDARK----------ASLSRKF-------------------------KVSGIPMLVAIGP 354 (477)
Q Consensus 316 ~~~~~------~~~~~~~p~~~d~~----------~~l~~~~-------------------------~v~~~Pt~~lid~ 354 (477)
++|++ +++ +.||+..+.+ ..+...+ +|...|+++|||+
T Consensus 103 ~~f~~~~~~~~~~~-~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflID~ 181 (208)
T 2f8a_A 103 LNSLKYVRPGGGFE-PNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGP 181 (208)
T ss_dssp HHHHHHTSSCTTCC-CSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECT
T ss_pred HHHHHhcccccccc-cceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEEcC
Confidence 89997 554 5666653210 0111111 3667799999999
Q ss_pred CCcEEEec
Q 011791 355 SGRTITKE 362 (477)
Q Consensus 355 ~G~iv~~~ 362 (477)
+|+|+.+.
T Consensus 182 ~G~i~~~~ 189 (208)
T 2f8a_A 182 DGVPLRRY 189 (208)
T ss_dssp TSCEEEEE
T ss_pred CCcEEEEe
Confidence 99999884
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=172.47 Aligned_cols=117 Identities=15% Similarity=0.256 Sum_probs=106.1
Q ss_pred ccCCCcce-----e-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC-----CC
Q 011791 243 VSGDLDFV-----V-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-----RD 311 (477)
Q Consensus 243 ~~~~p~f~-----l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d-----~~ 311 (477)
+...|+|. + +.+|+.+++++++||++||+||++||++|+.++|.|++++++|+++ ++.||+|++| .+
T Consensus 54 G~~aPdF~~~~~wL~d~dG~~vsLsdl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~--~v~vi~Vs~d~~~~~d~ 131 (352)
T 2hyx_A 54 CGTAPDLKGITGWLNTPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDS--GLAVIGVHTPEYAFEKV 131 (352)
T ss_dssp CCBCCCCCSCCEEESSGGGCCCCGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG--TEEEEEEECCSSGGGGC
T ss_pred CCcCCCccccccccCCCCCCEEcHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcC--CeEEEEEECCcccccCC
Confidence 44569999 8 8999999999999999999999999999999999999999999875 6999999986 46
Q ss_pred hhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEec
Q 011791 312 QTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 312 ~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
.+.+++|+++++ +.+|+..|....+.+.|+|.++|+++|||++|+|+.+.
T Consensus 132 ~~~~~~~~~~~~-l~fpv~~D~~~~l~~~ygV~~~Pt~~lID~~G~Iv~~~ 181 (352)
T 2hyx_A 132 PGNVAKGAANLG-ISYPIALDNNYATWTNYRNRYWPAEYLIDATGTVRHIK 181 (352)
T ss_dssp HHHHHHHHHHHT-CCSCEEECTTSHHHHHTTCCEESEEEEECTTSBEEEEE
T ss_pred HHHHHHHHHHcC-CCccEEeCCcHHHHHHcCCCccCEEEEEeCCCeEEEEE
Confidence 788999999887 57888888888999999999999999999999999873
|
| >1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-18 Score=159.07 Aligned_cols=118 Identities=19% Similarity=0.235 Sum_probs=104.7
Q ss_pred hccCCCccee-cc--CC--CceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHH
Q 011791 242 LVSGDLDFVV-GK--NG--GKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSF 315 (477)
Q Consensus 242 ~~~~~p~f~l-~~--~g--~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~ 315 (477)
++...|+|.+ +. +| +++++++++||++||+|| ++||++|+.++|.|++++++|+++ +++||+|++| +.+..
T Consensus 8 ~G~~aP~f~l~~~~~~g~~~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~--~v~vi~Is~D-~~~~~ 84 (202)
T 1uul_A 8 DLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI--GCEVLACSMD-SEYSH 84 (202)
T ss_dssp TTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTT--TEEEEEEESS-CHHHH
T ss_pred CCCcCCCcEeeeeecCCCccEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCC-CHHHH
Confidence 3556799999 66 78 899999999999999999 999999999999999999999865 6999999998 55678
Q ss_pred HHHHhcC----C--CceeccCcchhHHHHHhcCCC------CcceEEEECCCCcEEEec
Q 011791 316 DEFFKGM----P--WLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 316 ~~~~~~~----~--~~~~p~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~iv~~~ 362 (477)
++|++++ + .+++|+..|....+.+.|++. ++|+++|||++|+|+.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~~ 143 (202)
T 1uul_A 85 LAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQIT 143 (202)
T ss_dssp HHHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHHHHHhhCCCCCCceeEEECCchHHHHHcCCccCCCCceeeEEEEECCCCEEEEEE
Confidence 8898876 1 367888888888999999999 999999999999999884
|
| >2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-18 Score=160.62 Aligned_cols=139 Identities=19% Similarity=0.197 Sum_probs=114.9
Q ss_pred hccCCCccee-cc--CC--CceecccC-CCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhH
Q 011791 242 LVSGDLDFVV-GK--NG--GKVPVSDL-AGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTS 314 (477)
Q Consensus 242 ~~~~~p~f~l-~~--~g--~~~~l~~~-~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~ 314 (477)
++...|+|.+ +. +| ++++++++ +||++||+|| ++||++|+.++|.|++++++|+++ +++||+|++| +.+.
T Consensus 23 ~G~~aP~f~l~~~~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~Is~D-~~~~ 99 (213)
T 2i81_A 23 VGKEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHER--NVELLGCSVD-SKYT 99 (213)
T ss_dssp BTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHT--TEEEEEEESS-CHHH
T ss_pred CCCcCCCeEeeccccCCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCC-CHHH
Confidence 3556699999 77 89 89999999 9999999999 999999999999999999999875 6999999998 5677
Q ss_pred HHHHHhcCC------CceeccCcchhHHHHHhcCCC-----CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHH
Q 011791 315 FDEFFKGMP------WLALPFGDARKASLSRKFKVS-----GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMK 383 (477)
Q Consensus 315 ~~~~~~~~~------~~~~p~~~d~~~~l~~~~~v~-----~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~ 383 (477)
.++|++.+. .+++|++.|....+++.|++. .+|+++|||++|+|+.+.. |... ..++.+
T Consensus 100 ~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~p~~~lID~~G~i~~~~~-------~~~~---~~~~~~ 169 (213)
T 2i81_A 100 HLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLFDDSVSLRAFVLIDMNGIVQHLLV-------NNLA---IGRSVD 169 (213)
T ss_dssp HHHHHSSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEEE-------ECTT---CCCCHH
T ss_pred HHHHHHHHHhhCCccCCCceEEECCchHHHHHhCCccccCCcccEEEEECCCCEEEEEEe-------cCCC---CCCCHH
Confidence 888988761 467888888888999999999 8999999999999998842 2111 112345
Q ss_pred HHHHHHHHHH
Q 011791 384 EIDGQYNEMA 393 (477)
Q Consensus 384 ~l~~~~~~~~ 393 (477)
+|++.|+++.
T Consensus 170 ell~~l~~l~ 179 (213)
T 2i81_A 170 EILRIIDAIQ 179 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666554
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.7e-19 Score=156.26 Aligned_cols=120 Identities=13% Similarity=0.116 Sum_probs=98.2
Q ss_pred ccCcCCCcee-c--CCCCeEecCCCCCCEEEEEEecCCCccchhh-HHHHHHHHHHHhcCCCcEEEEEEEcC------CC
Q 011791 82 LTSHSRDFVI-S--SDGRKISVSDLEGKTIGLYFSMSSYKASAEF-TPRLVEVYEKLKGKGESFEIVLISLD------DE 151 (477)
Q Consensus 82 ~g~~~p~fl~-~--~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~-~p~l~~l~~~~~~~g~~~~vv~is~D------~~ 151 (477)
.|.++|+|.+ + .+|+.+++++++||+++|+||++||++|+.+ +|.|.+++++|++.+ +.+|+|++| ++
T Consensus 2 ~g~~aP~f~l~~~~~~g~~~~l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~--v~~v~v~~~~~~~~~~~ 79 (158)
T 3eyt_A 2 NAMKAPELQIQQWFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDK--VAVLGLHTVFEHHEAMT 79 (158)
T ss_dssp CCEECCCCCEEEEESCSSCCCTGGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTT--EEEEEEECCCSCGGGSC
T ss_pred CCCcCCCceehhhhcCCCccCHHHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCC--EEEEEEEecccccccCC
Confidence 3678999954 5 4899999999999999999999999999997 999999999998776 999999984 57
Q ss_pred HHHHHHhhcCCC--CccccCCchh--HHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 152 EESFKRDLGSMP--WLALPFKDKS--REKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 152 ~~~~~~~~~~~~--~~~~~~~~~~--~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
.+.++++++++. |..+...... ...+++.|++.++|+++|+|++|+++.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 135 (158)
T 3eyt_A 80 PISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAHHF 135 (158)
T ss_dssp HHHHHHHHHHTTCCSCEEEECCCSSSSCHHHHHTTCCSSSEEEEECTTSEEEEEEE
T ss_pred HHHHHHHHHHcCCCceEEEcCccchhhHHHHHHcCCCCCCEEEEECCCCCEEEEEe
Confidence 788888888654 3322222211 115889999999999999999999988653
|
| >3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=161.27 Aligned_cols=118 Identities=21% Similarity=0.280 Sum_probs=103.1
Q ss_pred hccCCCccee-cc-CC--CceecccCCCCEEEEEEeC-CCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHH
Q 011791 242 LVSGDLDFVV-GK-NG--GKVPVSDLAGKTILLYFSA-HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFD 316 (477)
Q Consensus 242 ~~~~~p~f~l-~~-~g--~~~~l~~~~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~ 316 (477)
.+...|+|.+ ++ ++ +++++++++||++||+||+ +||++|+.++|.|++++++|+++ +++||+|++|. .+..+
T Consensus 42 ~G~~aP~f~l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~--~v~vv~Is~D~-~~~~~ 118 (222)
T 3ztl_A 42 PNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSR--NCQVIACSTDS-QYSHL 118 (222)
T ss_dssp SSEECCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTT--TEEEEEEESSC-HHHHH
T ss_pred CCCCCCCeEEecccCCCCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEECCC-HHHHH
Confidence 3556699998 55 55 9999999999999999997 99999999999999999999865 69999999984 56677
Q ss_pred HHHhcC------CCceeccCcchhHHHHHhcCCC------CcceEEEECCCCcEEEec
Q 011791 317 EFFKGM------PWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 317 ~~~~~~------~~~~~p~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~iv~~~ 362 (477)
+|++.+ ..+.+|++.|....+.+.|++. .+|+++|||++|+|+...
T Consensus 119 ~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~ 176 (222)
T 3ztl_A 119 AWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQIT 176 (222)
T ss_dssp HHHHSCGGGTSCCSCSSCEEECSSSHHHHHTTCBCTTTSSBCEEEEEECTTSEEEEEE
T ss_pred HHHHHhhhhccccccceeEEeCCchHHHHHcCCeecCCCCccceEEEECCCCeEEEEE
Confidence 777765 2478888888888999999998 899999999999999984
|
| >1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-18 Score=159.53 Aligned_cols=137 Identities=14% Similarity=0.156 Sum_probs=113.5
Q ss_pred ccCCCccee-cc--CCC---ceecccC-CCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhH
Q 011791 243 VSGDLDFVV-GK--NGG---KVPVSDL-AGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTS 314 (477)
Q Consensus 243 ~~~~p~f~l-~~--~g~---~~~l~~~-~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~ 314 (477)
+...|+|.+ +. +|+ +++++++ +||++||+|| ++||++|+.++|.|++++++|+++ +++|++|++|. .+.
T Consensus 4 G~~~P~f~l~~~~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~Is~d~-~~~ 80 (198)
T 1zof_A 4 TKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEK--GFNVIGVSIDS-EQV 80 (198)
T ss_dssp TSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHT--TEEEEEEESSC-HHH
T ss_pred CCcCCceEeecccCCCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHc--CCEEEEEECCC-HHH
Confidence 445699999 87 898 9999999 9999999999 999999999999999999999876 79999999994 678
Q ss_pred HHHHHhc-------CCCceeccCcchhHHHHHhcCCC-----CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHH
Q 011791 315 FDEFFKG-------MPWLALPFGDARKASLSRKFKVS-----GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERM 382 (477)
Q Consensus 315 ~~~~~~~-------~~~~~~p~~~d~~~~l~~~~~v~-----~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~ 382 (477)
.++|+++ ++ +++|+..|....+.+.|++. ++|+++|||++|+|+.+.. |... .....
T Consensus 81 ~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~~-------g~~~---~~~~~ 149 (198)
T 1zof_A 81 HFAWKNTPVEKGGIGQ-VSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVI-------NDLP---LGRNA 149 (198)
T ss_dssp HHHHHTSCGGGTCCCC-CSSCEEECTTSHHHHHTTCEETTTEECEEEEEEETTTEEEEEEE-------ESSS---CCCHH
T ss_pred HHHHHHhhhhcccccC-ceeEEEECCchHHHHHhCCcccCCcccceEEEECCCCEEEEEEe-------cCCC---CCCCH
Confidence 8888887 34 56888888888999999999 9999999999999998842 2111 11244
Q ss_pred HHHHHHHHHHH
Q 011791 383 KEIDGQYNEMA 393 (477)
Q Consensus 383 ~~l~~~~~~~~ 393 (477)
++|.+.++++.
T Consensus 150 ~~l~~~l~~l~ 160 (198)
T 1zof_A 150 DEMLRMVDALL 160 (198)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666654
|
| >2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-18 Score=158.25 Aligned_cols=139 Identities=12% Similarity=0.133 Sum_probs=114.2
Q ss_pred ccCCCccee-ccC-------------C--CceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEE
Q 011791 243 VSGDLDFVV-GKN-------------G--GKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVF 305 (477)
Q Consensus 243 ~~~~p~f~l-~~~-------------g--~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~ 305 (477)
+...|+|.+ +.+ | +.+++++++||++||+|| ++||++|+.++|.|.+++++|+++ +++|++
T Consensus 7 G~~~P~f~l~~~~~~~~~~~~~~~~~G~~~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~ 84 (195)
T 2bmx_A 7 GDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDR--DAQILG 84 (195)
T ss_dssp TCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTT--TEEEEE
T ss_pred CCcCCCcCcccccccccccccccccCCCccEeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHC--CCEEEE
Confidence 445689998 777 6 899999999999999999 999999999999999999999875 699999
Q ss_pred EeCCCChhHHHHHHhcCC---CceeccCcchhHHHHHhcCCC-----CcceEEEECCCCcEEEeccchhhhhcCCCCCCC
Q 011791 306 ISSDRDQTSFDEFFKGMP---WLALPFGDARKASLSRKFKVS-----GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPF 377 (477)
Q Consensus 306 i~~d~~~~~~~~~~~~~~---~~~~p~~~d~~~~l~~~~~v~-----~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~ 377 (477)
|++|. .+..++|++++. -+.+|+..|....+.+.|++. ++|+++|||++|+|+.+.. |....
T Consensus 85 Vs~d~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~~-------g~~~~-- 154 (195)
T 2bmx_A 85 VSIDS-EFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFVSA-------TAGSV-- 154 (195)
T ss_dssp EESSC-HHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEEEE-------ECTTC--
T ss_pred EECCC-HHHHHHHHHHhccccCCceeEEeCCchHHHHHhCCcccCCCccceEEEEcCCCeEEEEEe-------cCCCC--
Confidence 99985 678888988772 256788888788999999999 9999999999999999842 22111
Q ss_pred CHHHHHHHHHHHHHHHc
Q 011791 378 TEERMKEIDGQYNEMAK 394 (477)
Q Consensus 378 ~~~~~~~l~~~~~~~~~ 394 (477)
..+.++|++.|+++..
T Consensus 155 -~~~~~~l~~~l~~l~~ 170 (195)
T 2bmx_A 155 -GRNVDEVLRVLDALQS 170 (195)
T ss_dssp -CCCHHHHHHHHHHHHC
T ss_pred -CCCHHHHHHHHHHHhh
Confidence 1234667777777664
|
| >4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-19 Score=159.12 Aligned_cols=118 Identities=17% Similarity=0.203 Sum_probs=91.9
Q ss_pred ccCcCCCcee-cCCCCeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhh
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 159 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~ 159 (477)
+|.++|+|.+ +.+|+.+++++++||+++|+|| ++||++|+.++|.|+++++++++.+ +++++||.|. .+..+++.
T Consensus 6 vG~~aPdF~l~~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~--~~~v~vs~d~-~~~~~~~~ 82 (157)
T 4g2e_A 6 IGELAPDFELPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVN--AVVLGISVDP-PFSNKAFK 82 (157)
T ss_dssp TTSBCCCCEEEBTTSCEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGCS--SEEEEEESSC-HHHHHHHH
T ss_pred CCCCCcCeEeECCCCCEEeHHHHCCCeEEEEecCCCCCCccccchhhcccccccccccC--ceEeeecccc-hhHHHHHH
Confidence 6899999954 9999999999999999999999 9999999999999999999999888 9999999984 55566666
Q ss_pred cCCCCccccCCchhHHHHHHHcCcc-----------cCCeEEEECCCCCccccch
Q 011791 160 GSMPWLALPFKDKSREKLARYFELS-----------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~i~~~~~ 203 (477)
++.. +.+|...+...++++.|||. ..|+++|||++|+|++...
T Consensus 83 ~~~~-~~~p~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~~~ 136 (157)
T 4g2e_A 83 EHNK-LNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWV 136 (157)
T ss_dssp HHTT-CCSEEEECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEEEE
T ss_pred HHcC-CcEEEEEcCCcHHHHHcCCccccccCCCcceeeeeEEEECCCCEEEEEEE
Confidence 6543 23344344456789999973 4688999999999987754
|
| >3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A | Back alignment and structure |
|---|
Probab=99.77 E-value=9.6e-19 Score=157.56 Aligned_cols=117 Identities=15% Similarity=0.204 Sum_probs=94.1
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC-------ChhH
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTS 314 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~-------~~~~ 314 (477)
+...|+|.+ +.+|+.+++++++||++||+|||+||++|+.++|.|++++++|+++ +++|++|++|. +.++
T Consensus 15 ~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~--~~~vi~is~d~~~~~~~d~~~~ 92 (180)
T 3kij_A 15 INSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPS--HFSVLAFPCNQFGESEPRPSKE 92 (180)
T ss_dssp CCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTT--SEEEEEEECCCSTTCCCSCHHH
T ss_pred cCcccceEEecCCCCEecHHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccC--CeEEEEEECCccccCCCCCHHH
Confidence 445599999 9999999999999999999999999999999999999999999876 79999999875 6788
Q ss_pred HHHHHhc-CCCceeccCc-----chhH-HHHHhc--CCCCcce----EEEECCCCcEEEec
Q 011791 315 FDEFFKG-MPWLALPFGD-----ARKA-SLSRKF--KVSGIPM----LVAIGPSGRTITKE 362 (477)
Q Consensus 315 ~~~~~~~-~~~~~~p~~~-----d~~~-~l~~~~--~v~~~Pt----~~lid~~G~iv~~~ 362 (477)
+++|+++ ++ +.+|+.. +... .+...+ .+.++|+ ++|||++|+|+.+.
T Consensus 93 ~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~ 152 (180)
T 3kij_A 93 VESFARKNYG-VTFPIFHKIKILGSEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFW 152 (180)
T ss_dssp HHHHHHHHHC-CCSCBBCCCCCSSTTCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEE
T ss_pred HHHHHHHhcC-CCCceeeeeeccCccccHHHHHHHhcCCCCccccceEEEECCCCCEEEEE
Confidence 9999988 65 4555532 1111 111111 1346888 99999999999884
|
| >2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.7e-19 Score=159.25 Aligned_cols=117 Identities=14% Similarity=0.193 Sum_probs=96.0
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC-------ChhH
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTS 314 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~-------~~~~ 314 (477)
+...|+|.+ +.+|+++++++++||++||+||++||++|+.++|.|++++++|+++ +++|++|++|. +.+.
T Consensus 26 g~~~p~f~l~~~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~--~v~vv~vs~d~~~~~e~~~~~~ 103 (181)
T 2p31_A 26 EQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPH--HFNVLAFPCNQFGQQEPDSNKE 103 (181)
T ss_dssp -CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCCSTTCCCSCHHH
T ss_pred CCccCceEeecCCCCEecHHHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcC--CEEEEEEECcCCCCCCCCCHHH
Confidence 445689999 9999999999999999999999999999999999999999999876 69999999974 5678
Q ss_pred HHHHHhc-CCCceeccCc--chhHHHH---HhcCCCCcc-------eEEEECCCCcEEEec
Q 011791 315 FDEFFKG-MPWLALPFGD--ARKASLS---RKFKVSGIP-------MLVAIGPSGRTITKE 362 (477)
Q Consensus 315 ~~~~~~~-~~~~~~p~~~--d~~~~l~---~~~~v~~~P-------t~~lid~~G~iv~~~ 362 (477)
+++|+++ ++ +.+|+.. |.+.... -.|++.++| +++|||++|+|+.+.
T Consensus 104 ~~~~~~~~~~-~~~p~~~~~d~~g~~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~ 163 (181)
T 2p31_A 104 IESFARRTYS-VSFPMFSKIAVTGTGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAW 163 (181)
T ss_dssp HHHHHHHHHC-CCSCBBCCCCCSSTTSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEE
T ss_pred HHHHHHhhcC-CCceeEeecccCCccchhhhhhhhhcCCCccccceeEEEEcCCCCEEEEe
Confidence 8999987 65 5577663 2221111 134577888 999999999999884
|
| >2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.77 E-value=7.2e-19 Score=154.97 Aligned_cols=135 Identities=15% Similarity=0.176 Sum_probs=111.8
Q ss_pred ccCCCccee-ccCCCceecccCCCC--EEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHH
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGK--TILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 318 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk--~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~ 318 (477)
+...|+|.+ +.+|+++++++++|| ++||+|| ++||++|+.++|.|++++++|+++ + +|++|++| +.+..++|
T Consensus 10 G~~~P~f~l~~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~-~vv~is~d-~~~~~~~~ 85 (159)
T 2a4v_A 10 GDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEY--A-AVFGLSAD-SVTSQKKF 85 (159)
T ss_dssp TCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT--C-EEEEEESC-CHHHHHHH
T ss_pred CCCCCCeEEECCCCCEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhC--C-cEEEEeCC-CHHHHHHH
Confidence 455699999 999999999999987 8999997 999999999999999999999876 5 99999999 56788899
Q ss_pred HhcCCCceeccCcchhHHHHHhcCCCCcc------eEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHH
Q 011791 319 FKGMPWLALPFGDARKASLSRKFKVSGIP------MLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEM 392 (477)
Q Consensus 319 ~~~~~~~~~p~~~d~~~~l~~~~~v~~~P------t~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~ 392 (477)
+++++ +.+|++.|.+..+.+.|++...| +++|| ++|+|+.... |. ....+.+.+.+.+.++
T Consensus 86 ~~~~~-~~~~~l~D~~~~~~~~~gv~~~p~~g~~~~~~li-~~G~i~~~~~-------g~----~~~~~~~~~~~~l~~~ 152 (159)
T 2a4v_A 86 QSKQN-LPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIF-VDGKLKFKRV-------KI----SPEVSVNDAKKEVLEV 152 (159)
T ss_dssp HHHHT-CSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEE-ETTEEEEEEE-------SC----CHHHHHHHHHHHHHHH
T ss_pred HHHhC-CCceEEECCccHHHHHhCCcccccCCccceEEEE-cCCEEEEEEc-------cC----CccccHHHHHHHHHHH
Confidence 99887 57888888888999999999988 89999 9999998842 21 1234445555655555
Q ss_pred Hc
Q 011791 393 AK 394 (477)
Q Consensus 393 ~~ 394 (477)
++
T Consensus 153 l~ 154 (159)
T 2a4v_A 153 AE 154 (159)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-18 Score=153.72 Aligned_cols=117 Identities=13% Similarity=0.194 Sum_probs=93.7
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC-------ChhH
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTS 314 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~-------~~~~ 314 (477)
+...|+|.+ +.+|+++++++++||++||+||++||++|+.++|.|++++++|+++ +++|++|++|. +.+.
T Consensus 8 g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~--~~~vv~v~~d~~~~~~~~~~~~ 85 (169)
T 2v1m_A 8 WNSIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGK--GLRILAFPCNQFGGQEPWAEAE 85 (169)
T ss_dssp CCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCCSTTCCCSCHHH
T ss_pred CcccccceeecCCCCCccHHHcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcC--CeEEEEEECCccCCCCCCCHHH
Confidence 445699999 9999999999999999999999999999999999999999999876 69999999873 4567
Q ss_pred HHHH-HhcCCCceeccCc--chhHH----HHH-----hcC-----CCCcceEEEECCCCcEEEec
Q 011791 315 FDEF-FKGMPWLALPFGD--ARKAS----LSR-----KFK-----VSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 315 ~~~~-~~~~~~~~~p~~~--d~~~~----l~~-----~~~-----v~~~Pt~~lid~~G~iv~~~ 362 (477)
+++| .++++ +.+|+.. |.... +.+ .++ |+.+|+++|||++|+++.+.
T Consensus 86 ~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~ 149 (169)
T 2v1m_A 86 IKKFVTEKYG-VQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRY 149 (169)
T ss_dssp HHHHHHHHHC-CCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEE
T ss_pred HHHHHHHhcC-CCCceEEEEeecCccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEc
Confidence 8888 47665 4556553 22221 111 125 56679999999999999884
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-20 Score=161.43 Aligned_cols=123 Identities=24% Similarity=0.515 Sum_probs=106.9
Q ss_pred cCCCce-ecCCCCeEecCC-CCCC-EEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcC
Q 011791 85 HSRDFV-ISSDGRKISVSD-LEGK-TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGS 161 (477)
Q Consensus 85 ~~p~fl-~~~~g~~v~ls~-l~gk-~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~ 161 (477)
.+|+|. .+.+|+.+++++ ++|| +++|+||++||++|+.++|.|.++++++++.+.++.+++|++|.+.+.+.+++++
T Consensus 3 ~~p~~~l~~~~g~~~~l~~~~~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~ 82 (143)
T 2lus_A 3 FIQGIKLVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMME 82 (143)
Confidence 357774 488999999999 9999 9999999999999999999999999999754445999999999888888888886
Q ss_pred C--CCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccchhhHH
Q 011791 162 M--PWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAI 207 (477)
Q Consensus 162 ~--~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~i 207 (477)
+ +|..+++..+....+++.|++.++|+++++|++|+++.+.+...+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~ 130 (143)
T 2lus_A 83 SHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGRGEV 130 (143)
Confidence 5 688888777777789999999999999999999999998765444
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-17 Score=170.29 Aligned_cols=171 Identities=16% Similarity=0.240 Sum_probs=110.0
Q ss_pred HHHHHHHcCcc----cCCeEEEECCCCCccccchhhHHhhcCCCCCCCChh--hHHHHHHHHHHHhhhhhhhhhhccCCC
Q 011791 174 REKLARYFELS----TLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPE--KFAELAEIQRAKEESQTLESVLVSGDL 247 (477)
Q Consensus 174 ~~~l~~~~~v~----~~P~~~lid~~G~i~~~~~~~~i~~~g~~a~P~~~~--~~~~l~~~~~~~~~~~~l~~~~~~~~p 247 (477)
.....+.||+. ..|.+++++.++...... . .++.+ .+..+..........+.+.+.......
T Consensus 283 ~~~~l~~~gl~~~~~~~P~~~i~~~~~~ky~~~-----~-------~~t~e~~~l~~f~~~~~~g~~~~~~~s~~~p~~~ 350 (481)
T 3f8u_A 283 FSHELSDFGLESTAGEIPVVAIRTAKGEKFVMQ-----E-------EFSRDGKALERFLQDYFDGNLKRYLKSEPIPESN 350 (481)
T ss_dssp THHHHGGGTCCCCTTCSCEEEEECSSSCEEECC-----S-------CCCTTSHHHHHHHHHHHHTCCCCCCCCCCCCSCC
T ss_pred HHHHHHHcCCCcccCCCcEEEEEcCCCcccCCC-----c-------ccCccHHHHHHHHHHHhcCCcccccccCCCCCCC
Confidence 35567899997 689999998666432211 0 13555 677766554443333333222222222
Q ss_pred ccee-ccCCCceecccC-CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCc
Q 011791 248 DFVV-GKNGGKVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWL 325 (477)
Q Consensus 248 ~f~l-~~~g~~~~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~ 325 (477)
+-.+ .++++.+..... .+|+|+|+|||+||++|+++.|.+.++++++++. .++.++.|+.+..
T Consensus 351 ~~~v~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~-~~v~~~~id~~~~-------------- 415 (481)
T 3f8u_A 351 DGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKD-PNIVIAKMDATAN-------------- 415 (481)
T ss_dssp CSSSEEECTTTHHHHHTCTTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTC-SSEEEEEEETTSS--------------
T ss_pred CCCeEEecccCHHHHhhcCCCcEEEEEecCcChhHHHhhHHHHHHHHHhccC-CCEEEEEEECCch--------------
Confidence 2223 566666654434 4899999999999999999999999999999763 2466666665533
Q ss_pred eeccCcchhHHHHHhcCCCCcceEEEECCCCcE-EEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcC
Q 011791 326 ALPFGDARKASLSRKFKVSGIPMLVAIGPSGRT-ITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKG 395 (477)
Q Consensus 326 ~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i-v~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 395 (477)
++.+.|+|.++||+++++++|++ +.+ +.| . ...+.|.+.+++.+..
T Consensus 416 ----------~~~~~~~v~~~Pt~~~~~~~~~~~~~~-------~~G----~---~~~~~l~~~l~~~~~~ 462 (481)
T 3f8u_A 416 ----------DVPSPYEVRGFPTIYFSPANKKLNPKK-------YEG----G---RELSDFISYLQREATN 462 (481)
T ss_dssp ----------CCCTTCCCCSSSEEEEECTTCTTSCEE-------CCS----C---CSHHHHHHHHHHHCSS
T ss_pred ----------hhHhhCCCcccCEEEEEeCCCeEeeeE-------eCC----C---CCHHHHHHHHHHhcCC
Confidence 25678999999999999877762 222 222 1 2246677778776654
|
| >3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-18 Score=153.07 Aligned_cols=142 Identities=14% Similarity=0.133 Sum_probs=110.9
Q ss_pred ccCCC-ccee-ccCCCceecccCCCCEEEEEEeCCCCh-hhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC--ChhHHHH
Q 011791 243 VSGDL-DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCP-PCRAFLPKLIDAYKKIKERNESLEVVFISSDR--DQTSFDE 317 (477)
Q Consensus 243 ~~~~p-~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~--~~~~~~~ 317 (477)
+...| +|.+ +.+|+++++++++||++||+||++||+ +|..+++.|+++++++++.+.+++||+|++|. +.+.+++
T Consensus 4 G~~~P~~f~l~d~~G~~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~ 83 (170)
T 3me7_A 4 GTYVPGDITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKR 83 (170)
T ss_dssp TCBCCTTCEEEETTCCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHH
T ss_pred CCcCCCCeEEEcCCcCEEchHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHH
Confidence 45568 9999 999999999999999999999999997 69999999999999997644579999999983 5678899
Q ss_pred HHhcCCC--ceecc----CcchhHHHHHhcCC---------CCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHH
Q 011791 318 FFKGMPW--LALPF----GDARKASLSRKFKV---------SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERM 382 (477)
Q Consensus 318 ~~~~~~~--~~~p~----~~d~~~~l~~~~~v---------~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~ 382 (477)
|+++++. ..+++ ..+....+++.||+ ...|+++|||++|+|+.. ++|... . .
T Consensus 84 ~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~-------~~g~~~---~---~ 150 (170)
T 3me7_A 84 FQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDY-------IYGVNY---N---Y 150 (170)
T ss_dssp HHHHTTCCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEE-------EESSSC---C---H
T ss_pred HHHHcCCCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEE-------EeCCCC---C---H
Confidence 9998762 22222 12455678888775 356899999999999987 344321 2 4
Q ss_pred HHHHHHHHHHHcCCc
Q 011791 383 KEIDGQYNEMAKGWP 397 (477)
Q Consensus 383 ~~l~~~~~~~~~~~~ 397 (477)
+++.+.|++++...+
T Consensus 151 ~~i~~~l~~~~~~~~ 165 (170)
T 3me7_A 151 LEFVNALRLARGEGH 165 (170)
T ss_dssp HHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhhcccc
Confidence 667777877765543
|
| >2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-18 Score=160.07 Aligned_cols=118 Identities=15% Similarity=0.156 Sum_probs=103.0
Q ss_pred hccCCCccee-cc---CCCceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHH
Q 011791 242 LVSGDLDFVV-GK---NGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFD 316 (477)
Q Consensus 242 ~~~~~p~f~l-~~---~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~ 316 (477)
++...|+|.+ +. +|+++++++++||++||+|| ++||++|+.++|.|++++++|+++ +++||+|++| +.+..+
T Consensus 21 ~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~--~v~vv~Is~D-~~~~~~ 97 (211)
T 2pn8_A 21 QSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSI--NTEVVACSVD-SQFTHL 97 (211)
T ss_dssp SSCBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTT--TEEEEEEESS-CHHHHH
T ss_pred CCCcCCCeEeecccCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECC-CHHHHH
Confidence 3456699998 54 45899999999999999999 999999999999999999999875 7999999998 556788
Q ss_pred HHHhcC----C--CceeccCcchhHHHHHhcCCC------CcceEEEECCCCcEEEec
Q 011791 317 EFFKGM----P--WLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 317 ~~~~~~----~--~~~~p~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~iv~~~ 362 (477)
+|++.+ + .+.+|++.|....+++.|++. .+|+++|||++|+|+...
T Consensus 98 ~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~I~~~~ 155 (211)
T 2pn8_A 98 AWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQIT 155 (211)
T ss_dssp HHHTSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHHhhhccCccCCceEEEECCchHHHHHcCCcccCCCcccceEEEECCCCEEEEEE
Confidence 898876 1 467888888888999999994 699999999999999884
|
| >2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-18 Score=157.87 Aligned_cols=134 Identities=17% Similarity=0.193 Sum_probs=101.7
Q ss_pred cCCCccee-ccC-CCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC-------ChhH
Q 011791 244 SGDLDFVV-GKN-GGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTS 314 (477)
Q Consensus 244 ~~~p~f~l-~~~-g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~-------~~~~ 314 (477)
...|+|.+ +.+ |+.++|++++||+|||+|||+||++|+ ++|.|++++++|+++ +++||+|++|. +.++
T Consensus 33 ~~~pdF~l~d~~~G~~v~Lsd~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~--g~~Vlgvs~d~f~~~e~~~~~~ 109 (215)
T 2i3y_A 33 GTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTA-QYPELNALQEELKPY--GLVVLGFPCNQFGKQEPGDNKE 109 (215)
T ss_dssp CCGGGCEEEBSSSSCEEEGGGGTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGG--TEEEEEEECCCSTTCCCSCHHH
T ss_pred CCcCCcEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccC--CeEEEEEEccccCcCCCCCHHH
Confidence 34589999 999 999999999999999999999999999 999999999999876 69999999762 3567
Q ss_pred HHHHHh------cCCCceeccCcchh--H----H----HHHh-------c--------------CCCCcceEEEECCCCc
Q 011791 315 FDEFFK------GMPWLALPFGDARK--A----S----LSRK-------F--------------KVSGIPMLVAIGPSGR 357 (477)
Q Consensus 315 ~~~~~~------~~~~~~~p~~~d~~--~----~----l~~~-------~--------------~v~~~Pt~~lid~~G~ 357 (477)
+++|++ +++ ++||+..+.+ . . +... + .|...|++||||++|+
T Consensus 110 i~~f~~~~~~~~~~~-~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~~G~ 188 (215)
T 2i3y_A 110 ILPGLKYVRPGGGFV-PSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGI 188 (215)
T ss_dssp HHHHHHHTSSCTTCC-CSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECTTSC
T ss_pred HHHHHHhccchhccC-ccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECCCCe
Confidence 889998 665 5777764311 1 1 1111 1 1333489999999999
Q ss_pred EEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcC
Q 011791 358 TITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKG 395 (477)
Q Consensus 358 iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 395 (477)
|+.+.. | ..+. ++|.+.|+++++.
T Consensus 189 vv~~~~-------g----~~~~---~~l~~~I~~ll~~ 212 (215)
T 2i3y_A 189 PVMRWS-------H----RATV---SSVKTDILAYLKQ 212 (215)
T ss_dssp EEEEEC-------T----TSCH---HHHHHHHHHHGGG
T ss_pred EEEEeC-------C----CCCH---HHHHHHHHHHHHH
Confidence 998843 1 1222 5577777777754
|
| >3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.9e-19 Score=164.06 Aligned_cols=120 Identities=13% Similarity=0.284 Sum_probs=102.4
Q ss_pred hccCcCCCce-ecCCCCeEecCCCCCC-EEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC-------CC
Q 011791 81 VLTSHSRDFV-ISSDGRKISVSDLEGK-TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------DE 151 (477)
Q Consensus 81 ~~g~~~p~fl-~~~~g~~v~ls~l~gk-~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D-------~~ 151 (477)
.+|.++|+|. .+.+|+.+++++++|| +|+|+||++||++|+.++|.|.+++++|+++| ++||+|++| ++
T Consensus 33 ~~G~~aP~f~l~~~~G~~v~l~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~Vs~d~~~~~~~d~ 110 (218)
T 3u5r_E 33 TLGTRAADFVLPDAGGNLFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQG--LAVVAINSNDAQAFPEET 110 (218)
T ss_dssp CTTCBCCCCCEECTTCCEECGGGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTT--EEEEEEECSCTTTCGGGS
T ss_pred CCCCcCCCcEeECCCCCEEeHHHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCC--cEEEEEECCcccccccCC
Confidence 3689999995 4999999999999999 59999999999999999999999999999887 999999997 57
Q ss_pred HHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 152 EESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
.+.++++++++. +.++...+....+++.|++..+|+++|||++|+++++..
T Consensus 111 ~~~~~~~~~~~~-~~~~~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~g~ 161 (218)
T 3u5r_E 111 LERVGAEVKAYG-YGFPYLKDASQSVAKAYGAACTPDFFLYDRERRLVYHGQ 161 (218)
T ss_dssp HHHHHHHHHHHT-CCSCEEECTTCHHHHHHTCCEESEEEEECTTCBEEEEEC
T ss_pred HHHHHHHHHHhC-CCccEEECCccHHHHHcCCCCCCeEEEECCCCcEEEecc
Confidence 777888887544 233333344567899999999999999999999987653
|
| >1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-18 Score=151.11 Aligned_cols=115 Identities=20% Similarity=0.307 Sum_probs=100.5
Q ss_pred hccCCCccee-ccCC--------CceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCCh
Q 011791 242 LVSGDLDFVV-GKNG--------GKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 312 (477)
Q Consensus 242 ~~~~~p~f~l-~~~g--------~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~ 312 (477)
.+...|+|.+ +.+| +.+++++++||+++|+||++||++|+.+.|.|++++++ .++.+++|++|.+.
T Consensus 10 ~g~~~p~f~l~~~~g~~~~~~~~~~~~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~-----~~v~~v~v~~~~~~ 84 (156)
T 1kng_A 10 IGRPAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD-----KRFQLVGINYKDAA 84 (156)
T ss_dssp --CBCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC-----TTSEEEEEEESCCH
T ss_pred hCCCCCCceeeeccCcccccccCceechHHhCCCEEEEEEEcccCHhHHHHHHHHHHHHhc-----CCeEEEEEECCCCH
Confidence 3556799999 8988 99999999999999999999999999999999988765 25999999999888
Q ss_pred hHHHHHHhcCCCceec-cCcchhHHHHHhcCCCCcceEEEECCCCcEEEec
Q 011791 313 TSFDEFFKGMPWLALP-FGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 313 ~~~~~~~~~~~~~~~p-~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
+.+++|+++++ +.+| +..+....+++.|+|.++|++++||++|+++.+.
T Consensus 85 ~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~v~~~P~~~~id~~G~i~~~~ 134 (156)
T 1kng_A 85 DNARRFLGRYG-NPFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYKL 134 (156)
T ss_dssp HHHHHHHHHHC-CCCSEEEEETTSHHHHHTTCCSSCEEEEECTTSBEEEEE
T ss_pred HHHHHHHHHcC-CCCceeeeCchhHHHHhcCcCccCeEEEEcCCCCEEEEE
Confidence 99999999887 4555 5567778899999999999999999999999873
|
| >3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.77 E-value=5.3e-19 Score=157.10 Aligned_cols=114 Identities=18% Similarity=0.137 Sum_probs=102.0
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHh
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK 320 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~ 320 (477)
+...|+|.+ +.+|+++++++++||+++|+|| ++||++|..++|.|++++++ .+++|++|+.| +.+.+++|.+
T Consensus 23 G~~aP~f~l~~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~-----~~~~vv~is~d-~~~~~~~~~~ 96 (166)
T 3p7x_A 23 GDFAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK-----EEGIVLTISAD-LPFAQKRWCA 96 (166)
T ss_dssp TSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT-----TTSEEEEEESS-CHHHHHHHHH
T ss_pred CCCCCCeEEEcCCCCEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc-----CCCEEEEEECC-CHHHHHHHHH
Confidence 455699999 9999999999999999999999 78999999999999998877 25999999998 5678899999
Q ss_pred cCCCceeccCcch-hHHHHHhcCCCC------cceEEEECCCCcEEEec
Q 011791 321 GMPWLALPFGDAR-KASLSRKFKVSG------IPMLVAIGPSGRTITKE 362 (477)
Q Consensus 321 ~~~~~~~p~~~d~-~~~l~~~~~v~~------~Pt~~lid~~G~iv~~~ 362 (477)
+++..++|+..|. ...+.+.|++.. +|+++|||++|+|+.++
T Consensus 97 ~~~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~ 145 (166)
T 3p7x_A 97 SAGLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKE 145 (166)
T ss_dssp HHTCSSCEEEECTTTCHHHHHHTCEETTTTEECCEEEEECTTCBEEEEE
T ss_pred HcCCCceEEccCCchhHHHHHhCCccccCCceeeEEEEECCCCeEEEEE
Confidence 8885478988887 789999999985 89999999999999974
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=152.07 Aligned_cols=120 Identities=18% Similarity=0.379 Sum_probs=102.3
Q ss_pred hccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCC-HHHHHHh
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE-EESFKRD 158 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~-~~~~~~~ 158 (477)
..|.++|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.++++++++.+ +.+++|++|.+ .+.++++
T Consensus 3 ~~G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~v~~d~~~~~~~~~~ 80 (154)
T 3kcm_A 3 LEENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKP--FRMLCVSIDEGGKVAVEEF 80 (154)
T ss_dssp CTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSS--EEEEEEECCTTHHHHHHHH
T ss_pred CCCCCCCCeEEEcCCCCEEehhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEEcCCcchHHHHHH
Confidence 56899999955 89999999999999999999999999999999999999999998866 99999999987 6777777
Q ss_pred hcCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 159 LGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
++.+.+ .++...+....+.+.|++.++|+++|+|++|+++.+..
T Consensus 81 ~~~~~~-~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 124 (154)
T 3kcm_A 81 FRKTGF-TLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVV 124 (154)
T ss_dssp HHHHCC-CCCEEECTTCHHHHHHTCCSBCEEEEECTTSBEEEEEE
T ss_pred HHHcCC-CeeEEecCchHHHHHhCCCCCCeEEEECCCCcEEEEEc
Confidence 775431 23333344566889999999999999999999987653
|
| >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5.9e-19 Score=156.02 Aligned_cols=118 Identities=19% Similarity=0.285 Sum_probs=99.8
Q ss_pred hccCcCCCce--e-cCCCCeEecCCCCCCEEEEEEec-CCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHH
Q 011791 81 VLTSHSRDFV--I-SSDGRKISVSDLEGKTIGLYFSM-SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 156 (477)
Q Consensus 81 ~~g~~~p~fl--~-~~~g~~v~ls~l~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~ 156 (477)
.+|.++|+|. + +.+|+++++++++||+++|+||+ +||++|+.++|.|++++++|+++| ++||+|+.| +.+..+
T Consensus 8 ~~G~~~P~f~~~l~~~~G~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~--~~vv~vs~d-~~~~~~ 84 (163)
T 3gkn_A 8 VLELPAATFDLPLSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAG--AKILGVSRD-SVKSHD 84 (163)
T ss_dssp CCCCCGGGGGCCEECSTTCEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTT--CEEEEEESS-CHHHHH
T ss_pred ccCCcCCCccccccCCCCCEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCC--CEEEEEeCC-CHHHHH
Confidence 4699999997 6 89999999999999999999998 999999999999999999999887 999999998 666677
Q ss_pred HhhcCCCCccccCCchhHHHHHHHcCccc------------CCeEEEECCCCCccccc
Q 011791 157 RDLGSMPWLALPFKDKSREKLARYFELST------------LPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~~------------~P~~~lid~~G~i~~~~ 202 (477)
++.+++. +.++...+....+.+.||+.. +|+++|||++|+++...
T Consensus 85 ~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~ 141 (163)
T 3gkn_A 85 NFCAKQG-FAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAW 141 (163)
T ss_dssp HHHHHHC-CSSCEEECTTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEE
T ss_pred HHHHHhC-CCceEEECCcHHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEE
Confidence 7776433 223333334457889999976 99999999999998755
|
| >2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-18 Score=155.42 Aligned_cols=114 Identities=15% Similarity=0.140 Sum_probs=100.3
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHh
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK 320 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~ 320 (477)
+...|+|.+ +.+|+++++++++||++||+|| ++||++|+.++|.|++++++| . +++||+|++| +.+..++|.+
T Consensus 24 g~~~P~f~l~~~~G~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~-~---~v~vv~Is~d-~~~~~~~~~~ 98 (171)
T 2yzh_A 24 GDRAPEAVVVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM-E---GVDVTVVSMD-LPFAQKRFCE 98 (171)
T ss_dssp TSBCCCEEEEETTSCEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-T---TEEEEEEESS-CHHHHHHHHH
T ss_pred CCcCCceEEECCCCCEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc-C---CceEEEEeCC-CHHHHHHHHH
Confidence 445699999 9999999999999999999999 899999999999999999988 3 6999999998 5677889999
Q ss_pred cCCCceeccCcc-hhHHHHHhcCCCC---------cceEEEECCCCcEEEec
Q 011791 321 GMPWLALPFGDA-RKASLSRKFKVSG---------IPMLVAIGPSGRTITKE 362 (477)
Q Consensus 321 ~~~~~~~p~~~d-~~~~l~~~~~v~~---------~Pt~~lid~~G~iv~~~ 362 (477)
+++..++|++.| ....+ +.|++.. +|+++|||++|+|+.+.
T Consensus 99 ~~~~~~~~~l~D~~~~~~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~ 149 (171)
T 2yzh_A 99 SFNIQNVTVASDFRYRDM-EKYGVLIGEGALKGILARAVFIIDKEGKVAYVQ 149 (171)
T ss_dssp HTTCCSSEEEECTTTCGG-GGGTCBBCSSTTTTSBCCEEEEECTTSBEEEEE
T ss_pred HcCCCCeEEeecCccCcH-HHhCCEecccccCCceeeEEEEEcCCCeEEEEE
Confidence 887437888888 67778 9999862 69999999999999885
|
| >1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-18 Score=154.06 Aligned_cols=116 Identities=17% Similarity=0.294 Sum_probs=103.0
Q ss_pred ccCCCccee---ccCC--Cceeccc-CCCCEEEEEEe-CCCChhhH-hHhHHHHHHHHHHHhcCCcEE-EEEEeCCCChh
Q 011791 243 VSGDLDFVV---GKNG--GKVPVSD-LAGKTILLYFS-AHWCPPCR-AFLPKLIDAYKKIKERNESLE-VVFISSDRDQT 313 (477)
Q Consensus 243 ~~~~p~f~l---~~~g--~~~~l~~-~~gk~vll~F~-a~wC~~C~-~~~p~l~~l~~~~~~~~~~~~-iv~i~~d~~~~ 313 (477)
+...|+|.+ +.+| +++++++ ++||++||+|| ++||++|. .++|.|++++++|+++ +++ |++|++| +.+
T Consensus 7 G~~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~--~v~~vv~Is~d-~~~ 83 (162)
T 1tp9_A 7 GDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSK--GVTEILCISVN-DPF 83 (162)
T ss_dssp TCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHT--TCCCEEEEESS-CHH
T ss_pred CCCCCCeEEEeecCCCCceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC--CCCEEEEEECC-CHH
Confidence 445689886 6889 9999999 89999999999 89999999 9999999999999876 699 9999998 567
Q ss_pred HHHHHHhcCCCc-eeccCcchhHHHHHhcCCC------C-----cceEEEECCCCcEEEec
Q 011791 314 SFDEFFKGMPWL-ALPFGDARKASLSRKFKVS------G-----IPMLVAIGPSGRTITKE 362 (477)
Q Consensus 314 ~~~~~~~~~~~~-~~p~~~d~~~~l~~~~~v~------~-----~Pt~~lid~~G~iv~~~ 362 (477)
..++|.++++.. ++|++.|.+..+++.||+. + +|+++||| +|+|+...
T Consensus 84 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G~i~~~~ 143 (162)
T 1tp9_A 84 VMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAAN 143 (162)
T ss_dssp HHHHHHHTCTTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEE
T ss_pred HHHHHHHhcCCCCCeEEEECCCchHHHHcCcccccccCCCCccceeEEEEEE-CCEEEEEE
Confidence 889999988843 6899989889999999986 3 89999999 99999884
|
| >2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-18 Score=155.46 Aligned_cols=117 Identities=13% Similarity=0.140 Sum_probs=94.7
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC-------ChhH
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTS 314 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~-------~~~~ 314 (477)
+...|+|.+ +.+|+++++++++||++||+||++||++|+.++|.|++++++|+++ +++|++|++|. +.+.
T Consensus 26 g~~~p~f~l~~~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~--~v~vv~is~d~~~~~~~~~~~~ 103 (185)
T 2gs3_A 26 ARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAEC--GLRILAFPCNQFGKQEPGSNEE 103 (185)
T ss_dssp CCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCTTTTCCCSCHHH
T ss_pred CCCcCCceeEcCCCCEeeHHHcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcC--CeEEEEEECcccCCCCCCCHHH
Confidence 445689999 9999999999999999999999999999999999999999999876 69999999873 4567
Q ss_pred HHHHHhcCCCceeccCc--chhHH----HHHhc-------C-----CCCcceEEEECCCCcEEEec
Q 011791 315 FDEFFKGMPWLALPFGD--ARKAS----LSRKF-------K-----VSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 315 ~~~~~~~~~~~~~p~~~--d~~~~----l~~~~-------~-----v~~~Pt~~lid~~G~iv~~~ 362 (477)
+++|+++++ +.+|+.. |.... +.+.+ + ++.+|+++|||++|+++.+.
T Consensus 104 ~~~~~~~~~-~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~ 168 (185)
T 2gs3_A 104 IKEFAAGYN-VKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRY 168 (185)
T ss_dssp HHHHHHHTT-CCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEE
T ss_pred HHHHHHHcC-CCCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEee
Confidence 889998876 4566653 22211 22211 4 34479999999999999884
|
| >1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.76 E-value=6.5e-19 Score=156.37 Aligned_cols=116 Identities=15% Similarity=0.118 Sum_probs=101.3
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHh
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK 320 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~ 320 (477)
+...|+|.+ +.+|+.+++++++||++||+|| ++||++|..++|.|++++++| . +++|++|++| +.+..++|++
T Consensus 20 G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~---~v~vv~Is~d-~~~~~~~~~~ 94 (165)
T 1q98_A 20 GEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL-S---NTIVLCISAD-LPFAQARFCG 94 (165)
T ss_dssp TCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS-T---TEEEEEEESS-CHHHHTTCTT
T ss_pred CCCCCCeEEECCCCCEEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc-C---CCEEEEEeCC-CHHHHHHHHH
Confidence 445699999 9999999999999999999999 899999999999999999998 3 5999999998 5567888888
Q ss_pred cCCCceeccCcch-hHHHHHhcCCCC---------cceEEEECCCCcEEEecc
Q 011791 321 GMPWLALPFGDAR-KASLSRKFKVSG---------IPMLVAIGPSGRTITKEA 363 (477)
Q Consensus 321 ~~~~~~~p~~~d~-~~~l~~~~~v~~---------~Pt~~lid~~G~iv~~~~ 363 (477)
++++.++|++.|. ...+.+.|++.. .|+++|||++|+|+....
T Consensus 95 ~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~ 147 (165)
T 1q98_A 95 AEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQL 147 (165)
T ss_dssp TTTCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEE
T ss_pred HcCCCceEEeeccccchHHHHhCceecccccCCccceeEEEEcCCCEEEEEEe
Confidence 8774368888886 688999999863 599999999999999853
|
| >2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-18 Score=155.66 Aligned_cols=117 Identities=14% Similarity=0.178 Sum_probs=96.1
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC-------ChhH
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTS 314 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~-------~~~~ 314 (477)
+...|+|.+ +.+|+++++++++||++||+||++||++|+.++|.|++++++|+++ +++|++|++|. +.+.
T Consensus 24 g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d~~~~~e~~~~~~ 101 (183)
T 2obi_A 24 ARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAEC--GLRILAFPCNQFGKQEPGSNEE 101 (183)
T ss_dssp CCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCCSTTCCCSCHHH
T ss_pred cCcccceEEEcCCCCEeeHHHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcC--CeEEEEEECCCCCCCCCCCHHH
Confidence 455699999 9999999999999999999999999999999999999999999876 69999999873 5678
Q ss_pred HHHHHhcCCCceeccCc--chhHH----HHHhc-------C-----CCCcceEEEECCCCcEEEec
Q 011791 315 FDEFFKGMPWLALPFGD--ARKAS----LSRKF-------K-----VSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 315 ~~~~~~~~~~~~~p~~~--d~~~~----l~~~~-------~-----v~~~Pt~~lid~~G~iv~~~ 362 (477)
+++|+++++ +.+|+.. |.... +.+.+ + |+.+|+++|||++|+++.+.
T Consensus 102 ~~~~~~~~~-~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~ 166 (183)
T 2obi_A 102 IKEFAAGYN-VKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRY 166 (183)
T ss_dssp HHHHHHTTT-CCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEE
T ss_pred HHHHHHHcC-CCceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEe
Confidence 999998887 4566653 32222 22211 4 45579999999999999874
|
| >2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-17 Score=153.55 Aligned_cols=116 Identities=22% Similarity=0.375 Sum_probs=97.7
Q ss_pred Cccee-ccCCCceecccCCCCEEEEEEeCCCChh-hHhHhHHHHHHHHHHHhc-CCcEEEEEEeCCC---ChhHHHHHHh
Q 011791 247 LDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPP-CRAFLPKLIDAYKKIKER-NESLEVVFISSDR---DQTSFDEFFK 320 (477)
Q Consensus 247 p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~-C~~~~p~l~~l~~~~~~~-~~~~~iv~i~~d~---~~~~~~~~~~ 320 (477)
|+|.+ +.+|+++++++++||++||+||++||++ |+.++|.|++++++++++ ..+++|++|++|. +.+.+++|++
T Consensus 22 p~f~l~d~~G~~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~ 101 (200)
T 2b7k_A 22 GPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLS 101 (200)
T ss_dssp CCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHT
T ss_pred CCEEEEcCCCCEEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHH
Confidence 89999 9999999999999999999999999997 999999999999999864 3479999999995 5778999998
Q ss_pred cCC--CceeccCcchhHHHHHhcCCC-Ccc---------------eEEEECCCCcEEEec
Q 011791 321 GMP--WLALPFGDARKASLSRKFKVS-GIP---------------MLVAIGPSGRTITKE 362 (477)
Q Consensus 321 ~~~--~~~~p~~~d~~~~l~~~~~v~-~~P---------------t~~lid~~G~iv~~~ 362 (477)
+++ |..++...+....+++.|||. +.| +++|||++|+|+...
T Consensus 102 ~~~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~ 161 (200)
T 2b7k_A 102 DFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDAL 161 (200)
T ss_dssp TSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEE
T ss_pred HcCCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEe
Confidence 775 444555456667889999997 454 889999999999874
|
| >2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-18 Score=151.90 Aligned_cols=114 Identities=22% Similarity=0.245 Sum_probs=98.9
Q ss_pred hccCCCccee-cc--CCCceecccC-CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHH
Q 011791 242 LVSGDLDFVV-GK--NGGKVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDE 317 (477)
Q Consensus 242 ~~~~~p~f~l-~~--~g~~~~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~ 317 (477)
++...|+|.+ +. +|+.++++.+ +||++||+||++||++|+.+.|.|++++++ ++.|++|++|.+.+.+++
T Consensus 24 ~G~~~P~f~l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~------~v~vv~v~~~~~~~~~~~ 97 (168)
T 2b1k_A 24 IGKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ------GIRVVGMNYKDDRQKAIS 97 (168)
T ss_dssp TTSBCCCCEEEESSSTTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT------TCCEEEEEESCCHHHHHH
T ss_pred cCCcCCCeEeecccCCCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC------CCEEEEEECCCChHHHHH
Confidence 4556799999 88 8999999885 899999999999999999999999988765 488999999988899999
Q ss_pred HHhcCCCceec-cCcchhHHHHHhcCCCCcceEEEECCCCcEEEec
Q 011791 318 FFKGMPWLALP-FGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 318 ~~~~~~~~~~p-~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
|+++++ +.++ +..+....+++.|+|.++|++++||++|+++.+.
T Consensus 98 ~~~~~~-~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 142 (168)
T 2b1k_A 98 WLKELG-NPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRH 142 (168)
T ss_dssp HHHHHC-CCCSEEEEETTCHHHHHHTCCSSSEEEEECTTSBEEEEE
T ss_pred HHHHcC-CCCceeeECcchHHHHHcCccccCEEEEECCCCeEEEEE
Confidence 999887 3444 3456677899999999999999999999999873
|
| >1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.76 E-value=6.6e-18 Score=157.14 Aligned_cols=139 Identities=16% Similarity=0.201 Sum_probs=113.1
Q ss_pred hccCCCccee-c---cCCCceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHH
Q 011791 242 LVSGDLDFVV-G---KNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFD 316 (477)
Q Consensus 242 ~~~~~p~f~l-~---~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~ 316 (477)
++...|+|.+ + .+|+++++++++||++||+|| ++||++|+.++|.|++++++|+++ +++||+|++| +.+..+
T Consensus 29 ~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~--~v~vv~Is~D-~~~~~~ 105 (220)
T 1zye_A 29 VTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDV--NCEVVAVSVD-SHFSHL 105 (220)
T ss_dssp TTSBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHT--TEEEEEEESS-CHHHHH
T ss_pred CCCCCCCcEEEeeeCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECC-CHHHHH
Confidence 3556799988 3 467999999999999999999 999999999999999999999875 6999999999 556778
Q ss_pred HHHhcC----C--CceeccCcchhHHHHHhcCCC------CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHH
Q 011791 317 EFFKGM----P--WLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKE 384 (477)
Q Consensus 317 ~~~~~~----~--~~~~p~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~ 384 (477)
+|++.+ + .+.+|+..|....+.+.|++. ++|+++|||++|+|+.+.. |... ...+.++
T Consensus 106 ~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~ygv~~~~~g~~~P~~~liD~~G~I~~~~~-------g~~~---~~~~~~e 175 (220)
T 1zye_A 106 AWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSV-------NDLP---VGRSVEE 175 (220)
T ss_dssp HHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEE-------ECTT---CCCCHHH
T ss_pred HHHHHHHHhCCCcCCceEEEECCcHHHHHHhCCeecCCCcccceEEEECCCCEEEEEEe-------cCCC---CCCCHHH
Confidence 888766 2 367888888888999999999 9999999999999998742 2111 1123456
Q ss_pred HHHHHHHHH
Q 011791 385 IDGQYNEMA 393 (477)
Q Consensus 385 l~~~~~~~~ 393 (477)
+++.|+++.
T Consensus 176 ll~~l~~l~ 184 (220)
T 1zye_A 176 TLRLVKAFQ 184 (220)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 666666655
|
| >3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-18 Score=157.33 Aligned_cols=137 Identities=12% Similarity=0.185 Sum_probs=111.4
Q ss_pred hhccCCCccee-cc--CC-Cceeccc-CCCCEE-EEEEeCCCChhhHh-HhHHHHHHHHHHHhcCCcEE-EEEEeCCCCh
Q 011791 241 VLVSGDLDFVV-GK--NG-GKVPVSD-LAGKTI-LLYFSAHWCPPCRA-FLPKLIDAYKKIKERNESLE-VVFISSDRDQ 312 (477)
Q Consensus 241 ~~~~~~p~f~l-~~--~g-~~~~l~~-~~gk~v-ll~F~a~wC~~C~~-~~p~l~~l~~~~~~~~~~~~-iv~i~~d~~~ 312 (477)
.++...|+|.+ +. +| +++++++ ++||++ |++||++||++|+. ++|.|++++++|+++ +++ |++|+.| +.
T Consensus 27 ~vG~~aPdf~l~~~~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~--gv~~vv~Is~d-~~ 103 (184)
T 3uma_A 27 AVGDKLPNATFKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILAR--GVDDIAVVAVN-DL 103 (184)
T ss_dssp CTTCBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTT--TCCEEEEEESS-CH
T ss_pred CCCCCCCCcEeecccCCCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHc--CCCEEEEEECC-CH
Confidence 34566799999 77 89 9999999 899965 55567999999999 799999999999976 688 9999998 56
Q ss_pred hHHHHHHhcCCCc-eeccCcchhHHHHHhcCCC-----------CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHH
Q 011791 313 TSFDEFFKGMPWL-ALPFGDARKASLSRKFKVS-----------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEE 380 (477)
Q Consensus 313 ~~~~~~~~~~~~~-~~p~~~d~~~~l~~~~~v~-----------~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~ 380 (477)
...++|.++++.. ++|++.|.+..+++.||+. ..|+++||+ +|+|+... .+.++.+++..
T Consensus 104 ~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~g~g~~~~r~tfiId-dG~I~~~~-------~~~~~g~~~~~ 175 (184)
T 3uma_A 104 HVMGAWATHSGGMGKIHFLSDWNAAFTKAIGMEIDLSAGTLGIRSKRYSMLVE-DGVVKALN-------IEESPGQATAS 175 (184)
T ss_dssp HHHHHHHHHHTCTTTSEEEECTTCHHHHHTTCEEEEGGGTCEEEECCEEEEEE-TTEEEEEE-------ECSSTTCCSTT
T ss_pred HHHHHHHHHhCCCCceEEEEcCchHHHHHcCCceeccccCCcccceeEEEEEC-CCEEEEEE-------EeCCCCCCcCC
Confidence 7888999988754 4999999999999999985 358899996 99999984 45445555555
Q ss_pred HHHHHHHH
Q 011791 381 RMKEIDGQ 388 (477)
Q Consensus 381 ~~~~l~~~ 388 (477)
..++++++
T Consensus 176 ~~~~vL~~ 183 (184)
T 3uma_A 176 GAAAMLEL 183 (184)
T ss_dssp SHHHHHHH
T ss_pred CHHHHHhh
Confidence 56666554
|
| >1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 | Back alignment and structure |
|---|
Probab=99.75 E-value=9.7e-19 Score=165.18 Aligned_cols=159 Identities=11% Similarity=0.185 Sum_probs=122.5
Q ss_pred ccCCCccee-cc-CCC--ceeccc-CCCCEEEEEEe-CCCChhhH-hHhHHHHHHHHHHHhcCCcE-EEEEEeCCCChhH
Q 011791 243 VSGDLDFVV-GK-NGG--KVPVSD-LAGKTILLYFS-AHWCPPCR-AFLPKLIDAYKKIKERNESL-EVVFISSDRDQTS 314 (477)
Q Consensus 243 ~~~~p~f~l-~~-~g~--~~~l~~-~~gk~vll~F~-a~wC~~C~-~~~p~l~~l~~~~~~~~~~~-~iv~i~~d~~~~~ 314 (477)
+...|+|.+ +. +|+ ++++++ ++||++||+|| ++||++|+ .++|.|++++++|+++ ++ +|++|+.| +...
T Consensus 6 G~~aP~f~l~~~~~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~--~~~~vv~is~d-~~~~ 82 (241)
T 1nm3_A 6 GKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKY--GVDDILVVSVN-DTFV 82 (241)
T ss_dssp TSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHT--TCCEEEEEESS-CHHH
T ss_pred CCCCCCeEEEcccCCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC--CCCEEEEEEcC-CHHH
Confidence 456799999 75 677 899999 89999999999 99999999 9999999999999876 69 99999998 4678
Q ss_pred HHHHHhcCCCceeccCcchhHHHHHhcCCC-----------CcceEEEECCCCcEEEeccchhhhhcCCCCC--CCCHHH
Q 011791 315 FDEFFKGMPWLALPFGDARKASLSRKFKVS-----------GIPMLVAIGPSGRTITKEARDMIAVHGAEAY--PFTEER 381 (477)
Q Consensus 315 ~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~-----------~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~--~~~~~~ 381 (477)
.++|.++++..++|++.|.+..+++.||+. ..|+++|| ++|+|+.... |.... |+...+
T Consensus 83 ~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~t~li-~~G~i~~~~~-------~~~~~~~~~~~~~ 154 (241)
T 1nm3_A 83 MNAWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLV-KNGVVEKMFI-------EPNEPGDPFKVSD 154 (241)
T ss_dssp HHHHHHHTTCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEE-ETTEEEEEEE-------CCSCSSCCCSSSS
T ss_pred HHHHHHhcCCCceEEEECCCcHHHHHhCceeecccccCcccceeEEEEE-ECCEEEEEEE-------eccCCCccceecC
Confidence 899999988656999999899999999986 45999999 9999998843 22211 112244
Q ss_pred HHHHHHHHHHHHcCCchhhhccccccceeeccCCceeccCCCC
Q 011791 382 MKEIDGQYNEMAKGWPENVKHALHEHELVLDRCGVYSCDGCDE 424 (477)
Q Consensus 382 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~C~~ 424 (477)
.+++++.++... .....+.+ ...++|+.|..
T Consensus 155 ~~~il~~l~~~~----------i~~~~i~l--y~~~~Cp~C~~ 185 (241)
T 1nm3_A 155 ADTMLKYLAPQH----------QVQESISI--FTKPGCPFCAK 185 (241)
T ss_dssp HHHHHHHHCTTS----------CCCCCEEE--EECSSCHHHHH
T ss_pred HHHHHHHhhhhc----------cccceEEE--EECCCChHHHH
Confidence 566666554211 12333444 34579999975
|
| >3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-18 Score=155.09 Aligned_cols=118 Identities=19% Similarity=0.180 Sum_probs=100.2
Q ss_pred hhccCcCCCcee-cCCC--CeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHH
Q 011791 80 SVLTSHSRDFVI-SSDG--RKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 156 (477)
Q Consensus 80 ~~~g~~~p~fl~-~~~g--~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~ 156 (477)
..+|.++|+|.+ +.+| +.+++++++||+++|+||++||++|+.++|.|.+++++ + +.||+|++|++.+.+.
T Consensus 30 ~~~G~~~P~f~l~~~~g~~~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----~--v~vv~vs~~d~~~~~~ 103 (176)
T 3kh7_A 30 ALIGKPFPAFDLPSVQDPARRLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ----G--VVIYGINYKDDNAAAI 103 (176)
T ss_dssp TTTTSBCCCCEEEBSSCTTSEEEGGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHT----T--CEEEEEEESCCHHHHH
T ss_pred cccCCcCCCcEecccCCCCceecHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHC----C--CEEEEEeCCCCHHHHH
Confidence 457999999955 8888 89999999999999999999999999999999999876 4 9999999999999999
Q ss_pred HhhcCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 157 RDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
++++++.+.......+....+.+.|++.++|+++|||++|+++....
T Consensus 104 ~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 150 (176)
T 3kh7_A 104 KWLNELHNPYLLSISDADGTLGLDLGVYGAPETYLIDKQGIIRHKIV 150 (176)
T ss_dssp HHHHHTTCCCSEEEEETTCHHHHHHTCCSSCEEEEECTTCBEEEEEE
T ss_pred HHHHHcCCCCceEEECCcchHHHHcCCCCCCeEEEECCCCeEEEEEc
Confidence 99997653322222334457889999999999999999999987653
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-18 Score=153.31 Aligned_cols=116 Identities=17% Similarity=0.261 Sum_probs=99.9
Q ss_pred hhccCcCCCce-ecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC---------
Q 011791 80 SVLTSHSRDFV-ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD--------- 149 (477)
Q Consensus 80 ~~~g~~~p~fl-~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D--------- 149 (477)
..+|.++|+|. .+.+|+.+++++++||+++|+||++||++|+.++|.|.+++++++ + +.|++|++|
T Consensus 11 ~~~g~~~p~~~l~~~~g~~~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~--~--v~vv~i~~d~~~~~~~~~ 86 (165)
T 3ha9_A 11 EEVLEREASFSLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR--E--ISVIAIDFWTAEALKALG 86 (165)
T ss_dssp HHHHHHHHCCCEEBTTSCEECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT--T--EEEEEEECCSHHHHHHHT
T ss_pred ccccCcCCCCEeecCCCCEeeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC--C--cEEEEEEecccccccccc
Confidence 34678899994 499999999999999999999999999999999999999999998 4 999999999
Q ss_pred ---------CCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccc
Q 011791 150 ---------DEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLH 200 (477)
Q Consensus 150 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~ 200 (477)
.+.+.++++++.+.+..++...+ ...+.+.|++.++|+++|+|++|+++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~v~~~P~~~lid~~G~i~~ 145 (165)
T 3ha9_A 87 LNKPGYPPPDTPEMFRKFIANYGDPSWIMVMD-DGSLVEKFNVRSIDYIVIMDKSSNVLY 145 (165)
T ss_dssp CCSTTSCCCCCHHHHHHHHHHHSCTTSEEEEC-CSHHHHHTTCCSSSEEEEEETTCCEEE
T ss_pred cccccCCCCCCHHHHHHHHHHcCCCCeeEEeC-hHHHHHHhCCCCceEEEEEcCCCcEEE
Confidence 78888888888654323333333 457899999999999999999999988
|
| >1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-18 Score=155.22 Aligned_cols=114 Identities=19% Similarity=0.233 Sum_probs=96.9
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCCC-ChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHh
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHW-CPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK 320 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~ 320 (477)
+...|+|.+ +.+|+.+++++++||++||+||++| |++|+.++|.|++++++ . +++||+|++| +.+..++|++
T Consensus 21 G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~--~---~v~vv~Is~D-~~~~~~~~~~ 94 (175)
T 1xvq_A 21 GSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA--S---GATVLCVSKD-LPFAQKRFCG 94 (175)
T ss_dssp TSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH--T---TCEEEEEESS-CHHHHTTCC-
T ss_pred CCcCCCeEEECCCCCEEeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh--c---CCEEEEEECC-CHHHHHHHHH
Confidence 445699999 9999999999999999999999999 99999999999999988 2 5999999998 4566778888
Q ss_pred cCCCceeccCcchhHHHHHhcCCCCc---------ceEEEECCCCcEEEec
Q 011791 321 GMPWLALPFGDARKASLSRKFKVSGI---------PMLVAIGPSGRTITKE 362 (477)
Q Consensus 321 ~~~~~~~p~~~d~~~~l~~~~~v~~~---------Pt~~lid~~G~iv~~~ 362 (477)
++++.++|++.|....+.+.|++..+ |+++|||++|+|+.+.
T Consensus 95 ~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~ 145 (175)
T 1xvq_A 95 AEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTE 145 (175)
T ss_dssp -----CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEE
T ss_pred HcCCCCceEeeCCHHHHHHHhCCcccccccCCcccceEEEECCCCeEEEEE
Confidence 77754788888877889999999887 9999999999999884
|
| >3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-18 Score=156.07 Aligned_cols=120 Identities=17% Similarity=0.229 Sum_probs=94.3
Q ss_pred ccCcCCCce-ecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC-------CCHH
Q 011791 82 LTSHSRDFV-ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------DEEE 153 (477)
Q Consensus 82 ~g~~~p~fl-~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D-------~~~~ 153 (477)
.+.++|+|. .+.+|+.+++++++||+|+|+|||+||++|+.++|.|++++++|+++| ++||+|++| ++.+
T Consensus 22 ~~~~~p~f~l~d~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~--~~vi~is~d~~~~~e~~~~~ 99 (187)
T 3dwv_A 22 AASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQG--FTVLAFPSNQFGGQEPGNEE 99 (187)
T ss_dssp TCCSGGGSCCBBTTSCBCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGT--CEEEEEEBCCCSSCSSSBTT
T ss_pred CCCccCCeEEEcCCCCEeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCC--eEEEEEECcccCCCCCCCHH
Confidence 367899995 499999999999999999999999999999999999999999999887 999999998 3567
Q ss_pred HHHHhhcC---CCCcccc--CCch-hHHHHH--------HHcCcccCC---eEEEECCCCCccccch
Q 011791 154 SFKRDLGS---MPWLALP--FKDK-SREKLA--------RYFELSTLP---TLVIIGPDGKTLHSNV 203 (477)
Q Consensus 154 ~~~~~~~~---~~~~~~~--~~~~-~~~~l~--------~~~~v~~~P---~~~lid~~G~i~~~~~ 203 (477)
.++++++. ++|..+. +... ....+. ..+++..+| +++|||++|+++....
T Consensus 100 ~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~ 166 (187)
T 3dwv_A 100 EIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFS 166 (187)
T ss_dssp HHHHSCCBCCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEEC
T ss_pred HHHHHHHhccCCCCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEEC
Confidence 78888873 2343332 1111 111121 345667788 9999999999998753
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-18 Score=154.36 Aligned_cols=120 Identities=24% Similarity=0.339 Sum_probs=99.5
Q ss_pred ccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCC-HHHHHHhh
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE-EESFKRDL 159 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~-~~~~~~~~ 159 (477)
.|.++|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.+++++|++.+ ++|++|++|.+ .+.+++++
T Consensus 36 ~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~d~~~~~~~~~~~ 113 (186)
T 1jfu_A 36 APLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPN--FEVVAINIDTRDPEKPKTFL 113 (186)
T ss_dssp SCCBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTT--EEEEEEECCCSCTTHHHHHH
T ss_pred CCCcCCCcEeEcCCCCEeeHHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCC--cEEEEEECCCCCHHHHHHHH
Confidence 4888999955 99999999999999999999999999999999999999999998766 99999999965 45667777
Q ss_pred cCCCCccccCCchhHHHHHHHcCcc----cCCeEEEECCCCCccccch
Q 011791 160 GSMPWLALPFKDKSREKLARYFELS----TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~v~----~~P~~~lid~~G~i~~~~~ 203 (477)
+++....++...+....+.+.|++. ++|+++|||++|+++.+..
T Consensus 114 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~~ 161 (186)
T 1jfu_A 114 KEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIA 161 (186)
T ss_dssp HHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEEE
T ss_pred HHcCCCCCceEECCcchHHHHhccccccCCCCEEEEECCCCCEEEEEe
Confidence 6554323333334445678888885 8999999999999987653
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.5e-18 Score=149.04 Aligned_cols=120 Identities=20% Similarity=0.343 Sum_probs=99.6
Q ss_pred hhccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC-CHHHHHH
Q 011791 80 SVLTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-EEESFKR 157 (477)
Q Consensus 80 ~~~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~-~~~~~~~ 157 (477)
.++|.++|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.++++++++.+ +.|++|+.|. +.+.+++
T Consensus 2 ~~~G~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~~~~~~~~~~~ 79 (153)
T 2l5o_A 2 SLDSKTAPAFSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKN--FQVLAVAQPIDPIESVRQ 79 (153)
T ss_dssp --CCTTCCSCEEECTTSCEEEHHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTT--EEEEEEECTTSCHHHHHH
T ss_pred CCCCCCCCCcEeecCCCCCccHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCC--eEEEEEecCCCCHHHHHH
Confidence 467999999954 89999999999999999999999999999999999999999999876 9999999864 4566777
Q ss_pred hhcCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccc
Q 011791 158 DLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 202 (477)
++..+.. .++...+....+.+.|++.++|+++|+|++|+++...
T Consensus 80 ~~~~~~~-~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~~~~ 123 (153)
T 2l5o_A 80 YVKDYGL-PFTVMYDADKAVGQAFGTQVYPTSVLIGKKGEILKTY 123 (153)
T ss_dssp HHHHTTC-CSEEEECSSCHHHHHHTCCSSSEEEEECSSSCCCEEE
T ss_pred HHHHcCC-CceEEcCchHHHHHHcCCCccCeEEEECCCCcEEEEE
Confidence 7775542 2233333345688999999999999999999998654
|
| >3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=157.34 Aligned_cols=119 Identities=16% Similarity=0.179 Sum_probs=103.5
Q ss_pred hhccCCCccee-cc---CCCceecccCCCCEEEEEEeC-CCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHH
Q 011791 241 VLVSGDLDFVV-GK---NGGKVPVSDLAGKTILLYFSA-HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSF 315 (477)
Q Consensus 241 ~~~~~~p~f~l-~~---~g~~~~l~~~~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~ 315 (477)
.++...|+|.+ ++ +|+++++++++||++||+||+ +||++|..++|.|++++++|+++ +++||+|++| +.+..
T Consensus 49 ~vG~~aPdF~l~~~~d~~G~~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~--gv~vv~Is~D-~~~~~ 125 (240)
T 3qpm_A 49 KISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAI--NTEVVACSVD-SQFTH 125 (240)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTT--TEEEEEEESS-CHHHH
T ss_pred CCCCCCCCcEeeeeeCCCCcEEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEECC-CHHHH
Confidence 34666799996 33 456999999999999999999 99999999999999999999876 7999999998 45677
Q ss_pred HHHHhcC------CCceeccCcchhHHHHHhcCCC------CcceEEEECCCCcEEEec
Q 011791 316 DEFFKGM------PWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 316 ~~~~~~~------~~~~~p~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~iv~~~ 362 (477)
++|++.. ..+.||++.|....+++.||+. .+|++||||++|+|+...
T Consensus 126 ~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~~~~g~~~p~~flID~~G~I~~~~ 184 (240)
T 3qpm_A 126 LAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQIT 184 (240)
T ss_dssp HHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHHHHHhhcCCCCCceeEEeCchHHHHHHhCCccccCCCccceEEEEcCCCeEEEEE
Confidence 7888765 2478898889889999999997 689999999999999884
|
| >3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-18 Score=158.49 Aligned_cols=115 Identities=21% Similarity=0.180 Sum_probs=102.4
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHh
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK 320 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~ 320 (477)
+...|+|.+ +.+|+.+++++++||++||+|| ++||++|+.++|.|++++++| . +++|++|+.| +.+.+++|++
T Consensus 55 G~~aPdf~l~d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~-~---~v~vv~Is~D-~~~~~~~~~~ 129 (200)
T 3zrd_A 55 GDKAKDFTLVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL-E---NTVVLCISSD-LPFAQSRFCG 129 (200)
T ss_dssp TCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS-T---TEEEEEEESS-CHHHHTTCTT
T ss_pred CCCCCCeEEECCCCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh-C---CCEEEEEECC-CHHHHHHHHH
Confidence 455699999 9999999999999999999999 689999999999999999998 2 5999999998 5677888888
Q ss_pred cCCCceeccCcch-hHHHHHhcCCC---------CcceEEEECCCCcEEEec
Q 011791 321 GMPWLALPFGDAR-KASLSRKFKVS---------GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 321 ~~~~~~~p~~~d~-~~~l~~~~~v~---------~~Pt~~lid~~G~iv~~~ 362 (477)
+++...+|++.|. ...+.+.|++. .+|+++|||++|+|+.+.
T Consensus 130 ~~~~~~f~~l~D~~~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I~~~~ 181 (200)
T 3zrd_A 130 AEGLSNVITLSTLRGADFKQAYGVAITEGPLAGLTARAVVVLDGQDNVIYSE 181 (200)
T ss_dssp TTTCTTEEEEETTSCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEE
T ss_pred HcCCCCceEEecCchHHHHHHhCceeecccCCCccccEEEEECCCCeEEEEE
Confidence 8874488988888 88999999986 369999999999999885
|
| >2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.3e-18 Score=150.80 Aligned_cols=116 Identities=15% Similarity=0.178 Sum_probs=102.1
Q ss_pred ccCCCccee--ccCCCceecccC-CCCEEEEEEe-CCCChhhHh-HhHHHHHHHHHHHhcCCcE-EEEEEeCCCChhHHH
Q 011791 243 VSGDLDFVV--GKNGGKVPVSDL-AGKTILLYFS-AHWCPPCRA-FLPKLIDAYKKIKERNESL-EVVFISSDRDQTSFD 316 (477)
Q Consensus 243 ~~~~p~f~l--~~~g~~~~l~~~-~gk~vll~F~-a~wC~~C~~-~~p~l~~l~~~~~~~~~~~-~iv~i~~d~~~~~~~ 316 (477)
+...|+|.+ +.+|++++++++ +||++||+|| ++||++|+. ++|.|++++++|+++ ++ +||+|+.| +.+..+
T Consensus 6 G~~aP~f~l~~~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~--gv~~vv~Is~d-~~~~~~ 82 (167)
T 2wfc_A 6 GDKLPAVTVFGATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGK--GVDIIACMAVN-DSFVMD 82 (167)
T ss_dssp TCBCCCCEEESSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHT--TCCEEEEEESS-CHHHHH
T ss_pred CCcCCCcEeecCCCCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC--CCCEEEEEeCC-CHHHHH
Confidence 445699987 688999999998 9999999886 999999999 999999999999876 69 99999998 567889
Q ss_pred HHHhcCCCc-eeccCcchhHHHHHhcCCCCc-----------ceEEEECCCCcEEEec
Q 011791 317 EFFKGMPWL-ALPFGDARKASLSRKFKVSGI-----------PMLVAIGPSGRTITKE 362 (477)
Q Consensus 317 ~~~~~~~~~-~~p~~~d~~~~l~~~~~v~~~-----------Pt~~lid~~G~iv~~~ 362 (477)
+|.++++.. ++|++.|.+..+++.||+... |+++|| ++|+|+...
T Consensus 83 ~~~~~~~~~~~fp~l~D~~~~~~~~~gv~~~~~~~~g~~~~~p~t~lI-~~G~I~~~~ 139 (167)
T 2wfc_A 83 AWGKAHGADDKVQMLADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVI-EDGVVTKVN 139 (167)
T ss_dssp HHHHHTTCTTTSEEEECTTSHHHHHTTCEECCHHHHSSCEECCEEEEE-ETTEEEEEE
T ss_pred HHHHhcCCCcceEEEECCCCcHHHHcCCccccccccCcccceEEEEEE-eCCEEEEEE
Confidence 999988742 389999988999999998754 999999 999999884
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-18 Score=147.03 Aligned_cols=118 Identities=17% Similarity=0.307 Sum_probs=100.2
Q ss_pred hccCcCCCce-ecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC---CHHHHH
Q 011791 81 VLTSHSRDFV-ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD---EEESFK 156 (477)
Q Consensus 81 ~~g~~~p~fl-~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~---~~~~~~ 156 (477)
.+|.++|+|. .+.+|+.+++++ +||+++|+||++||++|+.++|.|.++++++++.+ +.+++|++|. +.+.++
T Consensus 10 ~~g~~~p~~~l~~~~g~~~~l~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~v~~d~~~~~~~~~~ 86 (145)
T 3erw_A 10 KQPAVPAVFLMKTIEGEDISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDS--VKLVTVNLVNSEQNQQVVE 86 (145)
T ss_dssp --CCSCCEEEEECTTSCEEEESC-TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSS--EEEEEEECGGGSSCHHHHH
T ss_pred cCCCcCCCceeecCCCCEEeHHH-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCC--EEEEEEEccCCcCCHHHHH
Confidence 4688999995 489999999999 99999999999999999999999999999998666 9999999986 778888
Q ss_pred HhhcCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccc
Q 011791 157 RDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 202 (477)
++++... +.++...+....+.+.|++.++|+++|+|++|+++...
T Consensus 87 ~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 131 (145)
T 3erw_A 87 DFIKANK-LTFPIVLDSKGELMKEYHIITIPTSFLLNEKGEIEKTK 131 (145)
T ss_dssp HHHHHTT-CCSCEEECSSSHHHHHTTCCEESEEEEECTTCCEEEEE
T ss_pred HHHHHcC-CceeEEEcCchhHHHhcCcCccCeEEEEcCCCcEEEEE
Confidence 8888654 23444334445789999999999999999999998765
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.74 E-value=7.3e-18 Score=148.87 Aligned_cols=117 Identities=20% Similarity=0.303 Sum_probs=100.7
Q ss_pred hhccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHh
Q 011791 80 SVLTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 158 (477)
Q Consensus 80 ~~~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~ 158 (477)
...|.++|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.++++++++++ +.+++|++|.+.+.+.++
T Consensus 8 ~~~g~~~p~~~l~~~~g~~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~--v~~v~v~~d~~~~~~~~~ 85 (165)
T 3or5_A 8 DARPTPAPSFSGVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRG--FTFVGIAVNEQLPNVKNY 85 (165)
T ss_dssp CCCCCBCCCCEEECTTSCEEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTT--EEEEEEECSCCHHHHHHH
T ss_pred hcCCCCCCCceeeCCCCCEechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCC--eEEEEEECCCCHHHHHHH
Confidence 356889999954 89999999999999999999999999999999999999999999877 999999999988888888
Q ss_pred hcCC--CCccccCCchhHHHHHHHc------CcccCCeEEEECCCCCccccc
Q 011791 159 LGSM--PWLALPFKDKSREKLARYF------ELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 159 ~~~~--~~~~~~~~~~~~~~l~~~~------~v~~~P~~~lid~~G~i~~~~ 202 (477)
+++. +|..+... ..+.+.| ++.++|+++|+|++|+++...
T Consensus 86 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~ 133 (165)
T 3or5_A 86 MKTQGIIYPVMMAT----PELIRAFNGYIDGGITGIPTSFVIDASGNVSGVI 133 (165)
T ss_dssp HHHHTCCSCEEECC----HHHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEE
T ss_pred HHHcCCCCceEecC----HHHHHHHhhhhccCCCCCCeEEEECCCCcEEEEE
Confidence 8753 45444332 2566677 899999999999999998765
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.9e-18 Score=152.58 Aligned_cols=118 Identities=15% Similarity=0.114 Sum_probs=98.5
Q ss_pred hccCcCCCcee-cC--CCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcE------EEEEEEcCC-
Q 011791 81 VLTSHSRDFVI-SS--DGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESF------EIVLISLDD- 150 (477)
Q Consensus 81 ~~g~~~p~fl~-~~--~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~------~vv~is~D~- 150 (477)
-.|.++|+|.+ +. +|+.+++++++||+++|+||++||++|+.++|.|.+++++|+++| + .||+|++|.
T Consensus 32 ~~g~~~p~f~l~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~~~~~v~~v~v~~d~~ 109 (183)
T 3lwa_A 32 ADRQQLPDIGGDSLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAG--NGDTPGGTVLGINVRDY 109 (183)
T ss_dssp GGCCCCCCCEEEBSSSTTCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC-----CCSEEEEEEECSCC
T ss_pred ccCCCCCceeccccccCCcEecHHHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcC--CCccCCcEEEEEECCCC
Confidence 35789999954 88 999999999999999999999999999999999999999999887 7 999999998
Q ss_pred CHHHHHHhhcCC--CCccccCCchhHHHHHHHc---CcccCCeEEEECCCCCccccch
Q 011791 151 EEESFKRDLGSM--PWLALPFKDKSREKLARYF---ELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 151 ~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~---~v~~~P~~~lid~~G~i~~~~~ 203 (477)
+.+.++++++.+ +|..+.... ..+.+.| ++.++|+++|||++|+++....
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 164 (183)
T 3lwa_A 110 SRDIAQDFVTDNGLDYPSIYDPP---FMTAASLGGVPASVIPTTIVLDKQHRPAAVFL 164 (183)
T ss_dssp CHHHHHHHHHHTTCCSCEEECTT---CGGGGGTTTCCTTCCSEEEEECTTSCEEEEEC
T ss_pred CHHHHHHHHHHcCCCccEEECCc---chHHHHhccCCCCCCCeEEEECCCCcEEEEEc
Confidence 788888888854 455544332 3344444 6899999999999999987653
|
| >2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=147.73 Aligned_cols=118 Identities=19% Similarity=0.348 Sum_probs=99.4
Q ss_pred cCCCce-ecCCCCeEecCCCCCCEEEEEEecCCCcc-chhhHHHHHHHHHHHhcC-C-CcEEEEEEEcCC---CHHHHHH
Q 011791 85 HSRDFV-ISSDGRKISVSDLEGKTIGLYFSMSSYKA-SAEFTPRLVEVYEKLKGK-G-ESFEIVLISLDD---EEESFKR 157 (477)
Q Consensus 85 ~~p~fl-~~~~g~~v~ls~l~gk~vll~F~a~wC~~-C~~~~p~l~~l~~~~~~~-g-~~~~vv~is~D~---~~~~~~~ 157 (477)
.+|+|. .+.+|+++++++++||+++|+||++||++ |+.++|.|+++++++++. + .+++||+|++|. +.+.+++
T Consensus 2 ~ap~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~ 81 (164)
T 2ggt_A 2 LGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIAN 81 (164)
T ss_dssp CCCCCEEEETTSCEEEGGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHH
T ss_pred CCCCeEEEeCCCCEEeHHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHH
Confidence 468885 48999999999999999999999999998 999999999999999862 1 249999999986 3667788
Q ss_pred hhcCC--CCccccCCchhHHHHHHHcCcccCC---------------eEEEECCCCCccccc
Q 011791 158 DLGSM--PWLALPFKDKSREKLARYFELSTLP---------------TLVIIGPDGKTLHSN 202 (477)
Q Consensus 158 ~~~~~--~~~~~~~~~~~~~~l~~~~~v~~~P---------------~~~lid~~G~i~~~~ 202 (477)
+++.+ +|..+....+....+.+.|++..+| +++|||++|+++...
T Consensus 82 ~~~~~~~~~~~l~~~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 143 (164)
T 2ggt_A 82 YVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYF 143 (164)
T ss_dssp HHHTTCSSCEEEECCHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEE
T ss_pred HHHHcCCCeEEEeCCHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEe
Confidence 87754 5666555455667799999999999 899999999998865
|
| >1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.6e-18 Score=151.73 Aligned_cols=123 Identities=20% Similarity=0.349 Sum_probs=97.2
Q ss_pred hccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCc-cchhhHHHHHHHHHHHhcCCCcEEEEEEEcC---CCHHHH
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYK-ASAEFTPRLVEVYEKLKGKGESFEIVLISLD---DEEESF 155 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D---~~~~~~ 155 (477)
.+|.++|+|.+ +.+|+.+++++++||+++|+||++||+ +|+.++|.|.+++++|++.+.+++||+|++| ++.+.+
T Consensus 8 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~ 87 (174)
T 1xzo_A 8 PLNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQL 87 (174)
T ss_dssp CCCEECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHH
T ss_pred ccccccCCcEEEcCCCCEEehhhcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHH
Confidence 35888999954 999999999999999999999999999 9999999999999999987656999999998 467788
Q ss_pred HHhhcCCC--CccccCCchhHHHHHHH----------------cCcccCCeEEEECCCCCccccch
Q 011791 156 KRDLGSMP--WLALPFKDKSREKLARY----------------FELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 156 ~~~~~~~~--~~~~~~~~~~~~~l~~~----------------~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
+++++++. +...+...+....+.+. |++..+|+++|||++|+++....
T Consensus 88 ~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~ 153 (174)
T 1xzo_A 88 KKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYN 153 (174)
T ss_dssp HHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEE
T ss_pred HHHHHHcCCCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEc
Confidence 88888654 21112222211222222 35678999999999999987653
|
| >4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=149.05 Aligned_cols=140 Identities=17% Similarity=0.204 Sum_probs=102.9
Q ss_pred hccCCCccee-ccCCCceecccCCCCEEEEEEeCCCCh-hhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC---ChhHHH
Q 011791 242 LVSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCP-PCRAFLPKLIDAYKKIKERNESLEVVFISSDR---DQTSFD 316 (477)
Q Consensus 242 ~~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~---~~~~~~ 316 (477)
++.+.|+|.| +.+|+++++++++||++||+||++||+ +|...++.|.++++.+++.+.++++|+|++|. +.+.++
T Consensus 8 ~~~~~PdF~L~d~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp~~l~ 87 (170)
T 4hde_A 8 LNWDLETFQFTNQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPENLK 87 (170)
T ss_dssp CCBCCCCCEEECTTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHH
T ss_pred CCCcCCCcEEECCCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcccccHHHHH
Confidence 3556799999 999999999999999999999999997 89999999999999998776789999999984 467888
Q ss_pred HHHhcCCC--ceeccCcch-----hHHHHHhcCC----------CCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCH
Q 011791 317 EFFKGMPW--LALPFGDAR-----KASLSRKFKV----------SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTE 379 (477)
Q Consensus 317 ~~~~~~~~--~~~p~~~d~-----~~~l~~~~~v----------~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~ 379 (477)
+|.+.++. ..+.++.+. .......|++ .-.|+++|||++|+|+... .|.. .
T Consensus 88 ~y~~~~~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~-------~g~~-----~ 155 (170)
T 4hde_A 88 AFIQKFTEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKY-------SGIS-----N 155 (170)
T ss_dssp HHHTTTCSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEE-------ESSS-----S
T ss_pred HHHHHcCCCCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEE-------CCCC-----C
Confidence 99987641 222222211 1112223333 2347899999999999773 2211 1
Q ss_pred HHHHHHHHHHHHHH
Q 011791 380 ERMKEIDGQYNEMA 393 (477)
Q Consensus 380 ~~~~~l~~~~~~~~ 393 (477)
...++|.+.|+.++
T Consensus 156 ~~~~~l~~~ik~Ll 169 (170)
T 4hde_A 156 TPYEDIIRDMKRLA 169 (170)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 12366777777665
|
| >2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.3e-17 Score=149.95 Aligned_cols=115 Identities=13% Similarity=0.137 Sum_probs=90.9
Q ss_pred cCCCccee-ccC-CCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC-------ChhH
Q 011791 244 SGDLDFVV-GKN-GGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTS 314 (477)
Q Consensus 244 ~~~p~f~l-~~~-g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~-------~~~~ 314 (477)
...|+|.+ +.+ |+.+++++++||+|||+|||+||++| .++|.|++++++|+++ +++||+|++|. +.++
T Consensus 15 ~~~pdF~l~d~~~G~~v~Ls~~kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~--g~~vlgvs~d~f~~~e~~~~~~ 91 (207)
T 2r37_A 15 GTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPF--GLVILGFPCNQFGKQEPGENSE 91 (207)
T ss_dssp CCGGGCEEEBTTSSCEEEGGGGTTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGG--TEEEEEEECCCBTTCCCSCHHH
T ss_pred CccCCeEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccC--CEEEEEEECcccCcCCCCCHHH
Confidence 34589999 999 99999999999999999999999999 7899999999999976 69999999762 3567
Q ss_pred HHHHHh------cCCCceeccCcchh------HH----HHHhc-------C--------------CCCcceEEEECCCCc
Q 011791 315 FDEFFK------GMPWLALPFGDARK------AS----LSRKF-------K--------------VSGIPMLVAIGPSGR 357 (477)
Q Consensus 315 ~~~~~~------~~~~~~~p~~~d~~------~~----l~~~~-------~--------------v~~~Pt~~lid~~G~ 357 (477)
+++|++ +++ ++||++.+.+ .. +.... + |...|++||||++|+
T Consensus 92 i~~f~~~~~~~~~~~-~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~~G~ 170 (207)
T 2r37_A 92 ILPTLKYVRPGGGFV-PNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGI 170 (207)
T ss_dssp HHHHHHHTSSCTTCC-CSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECTTSC
T ss_pred HHHHHHhcchhhccC-ccceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECCCCc
Confidence 889998 666 5677654311 11 11111 1 233489999999999
Q ss_pred EEEec
Q 011791 358 TITKE 362 (477)
Q Consensus 358 iv~~~ 362 (477)
|+.+.
T Consensus 171 i~~~~ 175 (207)
T 2r37_A 171 PIMRW 175 (207)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99884
|
| >2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-18 Score=153.17 Aligned_cols=117 Identities=25% Similarity=0.421 Sum_probs=99.1
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCCCChh-hHhHhHHHHHHHHHHHhcC-CcEEEEEEeCCC---ChhHHH
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPP-CRAFLPKLIDAYKKIKERN-ESLEVVFISSDR---DQTSFD 316 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~-C~~~~p~l~~l~~~~~~~~-~~~~iv~i~~d~---~~~~~~ 316 (477)
+...|+|.+ +.+| .+++++++||++||+||++||++ |+.++|.|++++++|++++ .+++|++|++|. +.+.++
T Consensus 13 G~~~p~f~l~~~~g-~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~ 91 (172)
T 2k6v_A 13 NPKPVDFALEGPQG-PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVAD 91 (172)
T ss_dssp EEEECCCEEECSSS-EEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHH
T ss_pred CCCCCCeEEEcCCC-CCcHHHhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHH
Confidence 444689999 9999 99999999999999999999997 9999999999999987531 259999999984 357888
Q ss_pred HHHhcCCCceeccCcchh---HHHHHhcCC---------------CCcceEEEECCCCcEEEec
Q 011791 317 EFFKGMPWLALPFGDARK---ASLSRKFKV---------------SGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 317 ~~~~~~~~~~~p~~~d~~---~~l~~~~~v---------------~~~Pt~~lid~~G~iv~~~ 362 (477)
+|+++++ ..+|++.+.. ..+.+.|++ .++|+++||| +|+++.+.
T Consensus 92 ~~~~~~~-~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~ 153 (172)
T 2k6v_A 92 RYAKAFH-PSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLY 153 (172)
T ss_dssp HHHHHHC-TTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEE
T ss_pred HHHHHhC-CCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEE
Confidence 9999887 5677777655 577777774 5789999999 99999874
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.5e-18 Score=149.58 Aligned_cols=117 Identities=13% Similarity=0.262 Sum_probs=97.0
Q ss_pred hccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhh
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 159 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~ 159 (477)
..|.++|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.++++++++.+ +.+|+|+.|.+ +.+++
T Consensus 16 ~~G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~v~~d~~---~~~~~ 90 (158)
T 3hdc_A 16 RTGALAPNFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGD--LVVLAVNVEKR---FPEKY 90 (158)
T ss_dssp CTTSBCCCCEEECTTSCEEESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTS--EEEEEEECSSS---CCGGG
T ss_pred CCCCcCCCceeEcCCCCEEehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCC--eEEEEEeCCHH---HHHHH
Confidence 45889999954 99999999999999999999999999999999999999999998766 99999999974 33444
Q ss_pred cCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 160 GSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
+... +.++...+....+.+.|++.++|+++|+|++|+++.+..
T Consensus 91 ~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 133 (158)
T 3hdc_A 91 RRAP-VSFNFLSDATGQVQQRYGANRLPDTFIVDRKGIIRQRVT 133 (158)
T ss_dssp GGCC-CSCEEEECTTSHHHHHTTCCSSSEEEEECTTSBEEEEEE
T ss_pred HHcC-CCceEEECchHHHHHHhCCCCcceEEEEcCCCCEEEEEe
Confidence 4433 123333344457899999999999999999999988754
|
| >3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A | Back alignment and structure |
|---|
Probab=99.74 E-value=5.9e-18 Score=151.17 Aligned_cols=120 Identities=16% Similarity=0.257 Sum_probs=102.2
Q ss_pred hhhccCCCccee--ccCCCceeccc-CCCCEEEEE-EeCCCChhhH-hHhHHHHHHHHHHHhcCCcEEEEE-EeCCCChh
Q 011791 240 SVLVSGDLDFVV--GKNGGKVPVSD-LAGKTILLY-FSAHWCPPCR-AFLPKLIDAYKKIKERNESLEVVF-ISSDRDQT 313 (477)
Q Consensus 240 ~~~~~~~p~f~l--~~~g~~~~l~~-~~gk~vll~-F~a~wC~~C~-~~~p~l~~l~~~~~~~~~~~~iv~-i~~d~~~~ 313 (477)
..++...|+|.+ +.+|+++++++ ++||+++|+ ||++||++|+ .++|.|++++++|+++ +++||+ |+.| +..
T Consensus 15 ~~vG~~aPdf~l~~~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~--gv~vv~~iS~D-~~~ 91 (173)
T 3mng_A 15 IKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAK--GVQVVACLSVN-DAF 91 (173)
T ss_dssp CCTTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTT--TCCEEEEEESS-CHH
T ss_pred CCCCCCCCCeEeeeCCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEEcCC-CHH
Confidence 345667799998 58999999999 699976655 5599999999 5999999999999876 799997 9998 567
Q ss_pred HHHHHHhcCCCc-eeccCcchhHHHHHhcCCC-------------CcceEEEECCCCcEEEecc
Q 011791 314 SFDEFFKGMPWL-ALPFGDARKASLSRKFKVS-------------GIPMLVAIGPSGRTITKEA 363 (477)
Q Consensus 314 ~~~~~~~~~~~~-~~p~~~d~~~~l~~~~~v~-------------~~Pt~~lid~~G~iv~~~~ 363 (477)
..++|.++++.. .||++.|.+..+++.||+. ..|+++||| +|+|+....
T Consensus 92 ~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~~v 154 (173)
T 3mng_A 92 VTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIVKALNV 154 (173)
T ss_dssp HHHHHHHHTTCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEEEEEEE
T ss_pred HHHHHHHHhCCCCceEEEECCChHHHHHhCCCcccccccccCCcceEEEEEEEE-CCEEEEEEE
Confidence 889999988853 5999999999999999985 359999999 999998853
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.2e-18 Score=143.09 Aligned_cols=116 Identities=22% Similarity=0.331 Sum_probs=98.6
Q ss_pred cCCCce-ecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEE-----cCCCHHHHHHh
Q 011791 85 HSRDFV-ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLIS-----LDDEEESFKRD 158 (477)
Q Consensus 85 ~~p~fl-~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is-----~D~~~~~~~~~ 158 (477)
++|+|. .+.+|+.+++++++||+++|+||++||++|+.++|.|.++++++.+ + +.+++|. .+.+.+.+.++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~--~~~v~i~~~~~~~~~~~~~~~~~ 77 (138)
T 4evm_A 1 EVADFELMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGD-D--YVVLTVVSPGHKGEQSEADFKNW 77 (138)
T ss_dssp CCCCCEEEBTTSCEEEGGGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTT-T--EEEEEEECTTSTTCCCHHHHHHH
T ss_pred CCCcceeECCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCC-C--cEEEEEEcCCCCchhhHHHHHHH
Confidence 478885 4899999999999999999999999999999999999999998543 3 8999994 45677889999
Q ss_pred hcCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 159 LGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
++...+..++...+....+.+.|++.++|+++|+|++|+++....
T Consensus 78 ~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 122 (138)
T 4evm_A 78 YKGLDYKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGKLVKTHP 122 (138)
T ss_dssp HTTCCCTTCCEEECTTCHHHHHTTCCSSSEEEEECTTCCEEEEEE
T ss_pred HhhcCCCCeeEEECcchHHHHHcCcccCCeEEEECCCCcEEEeec
Confidence 998776556655555667999999999999999999999987653
|
| >2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.6e-18 Score=152.55 Aligned_cols=116 Identities=14% Similarity=0.287 Sum_probs=100.1
Q ss_pred ccCCCccee-cc----CC-----CceecccC-CCC-EEEEEEeCCCChhhHhH-hHHHHHHHHHHHhcCCcEE-EEEEeC
Q 011791 243 VSGDLDFVV-GK----NG-----GKVPVSDL-AGK-TILLYFSAHWCPPCRAF-LPKLIDAYKKIKERNESLE-VVFISS 308 (477)
Q Consensus 243 ~~~~p~f~l-~~----~g-----~~~~l~~~-~gk-~vll~F~a~wC~~C~~~-~p~l~~l~~~~~~~~~~~~-iv~i~~ 308 (477)
+...|+|.+ +. +| ++++++++ +|| +||++||++||++|+.+ +|.|++++++|+++ +++ |++|+.
T Consensus 10 g~~aP~f~l~~~~~~~~G~~~~~~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~--g~~~vv~Is~ 87 (171)
T 2pwj_A 10 LSAASNVSLQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAK--GVDSVICVAI 87 (171)
T ss_dssp CCCSSSBCCCSCEECCCSSCTTCCCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHT--TCSEEEEEES
T ss_pred cCcCCCeEEecccccccCCccCcceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHC--CCCEEEEEeC
Confidence 446799998 66 47 89999996 996 67778999999999999 99999999999876 688 999999
Q ss_pred CCChhHHHHHHhcCCC-ceeccCcchhHHHHHhcCCCC-----------cceEEEECCCCcEEEec
Q 011791 309 DRDQTSFDEFFKGMPW-LALPFGDARKASLSRKFKVSG-----------IPMLVAIGPSGRTITKE 362 (477)
Q Consensus 309 d~~~~~~~~~~~~~~~-~~~p~~~d~~~~l~~~~~v~~-----------~Pt~~lid~~G~iv~~~ 362 (477)
| +....++|.++++. .++|++.|.+..+++.||+.. .|+.++|| +|+|+..+
T Consensus 88 d-~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~~~~~~~~g~~~~~~t~~I~-~G~I~~~~ 151 (171)
T 2pwj_A 88 N-DPYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSERWSAYVV-DGKVKALN 151 (171)
T ss_dssp S-CHHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEEECTTTTCCEEECCEEEEEE-TTEEEEEE
T ss_pred C-CHHHHHHHHHHhCCCCceEEEECCccHHHHHhCCccccccccCCcccceeEEEEE-CCEEEEEE
Confidence 8 56788999999886 479999999999999999852 56888888 99999884
|
| >2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-17 Score=147.46 Aligned_cols=116 Identities=20% Similarity=0.333 Sum_probs=97.9
Q ss_pred CCce-ecCCCCeEecCCCCCCEEEEEEecCCCcc-chhhHHHHHHHHHHHhcC--CCcEEEEEEEcCC---CHHHHHHhh
Q 011791 87 RDFV-ISSDGRKISVSDLEGKTIGLYFSMSSYKA-SAEFTPRLVEVYEKLKGK--GESFEIVLISLDD---EEESFKRDL 159 (477)
Q Consensus 87 p~fl-~~~~g~~v~ls~l~gk~vll~F~a~wC~~-C~~~~p~l~~l~~~~~~~--g~~~~vv~is~D~---~~~~~~~~~ 159 (477)
|+|. .+.+|+.+++++++||+++|+||++||++ |+.++|.|++++++|++. +.+++||+|++|. +.+.+++++
T Consensus 7 p~f~l~~~~G~~~~l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~ 86 (171)
T 2rli_A 7 GDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYV 86 (171)
T ss_dssp SCCEEEETTSCEEETTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHH
T ss_pred CCeEEEeCCCCEEeHHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHH
Confidence 7885 48999999999999999999999999998 999999999999999752 1249999999984 567788888
Q ss_pred cCC--CCccccCCchhHHHHHHHcCcccCC---------------eEEEECCCCCccccc
Q 011791 160 GSM--PWLALPFKDKSREKLARYFELSTLP---------------TLVIIGPDGKTLHSN 202 (477)
Q Consensus 160 ~~~--~~~~~~~~~~~~~~l~~~~~v~~~P---------------~~~lid~~G~i~~~~ 202 (477)
+.+ +|..+....+....+++.|++..+| +++|||++|+++...
T Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 146 (171)
T 2rli_A 87 QDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYY 146 (171)
T ss_dssp HTTCTTCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEE
T ss_pred HHcCCCeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEE
Confidence 764 5666655555556799999998888 999999999998865
|
| >2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.2e-18 Score=157.77 Aligned_cols=120 Identities=16% Similarity=0.184 Sum_probs=98.9
Q ss_pred hccCcCCCcee-cC--CC--CeEecCCC-CCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHH
Q 011791 81 VLTSHSRDFVI-SS--DG--RKISVSDL-EGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEE 153 (477)
Q Consensus 81 ~~g~~~p~fl~-~~--~g--~~v~ls~l-~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~ 153 (477)
.+|.++|+|.+ +. +| +.++++++ +||+|+|+|| ++||++|+.++|.|++++++|++++ ++||+||+|+ .+
T Consensus 26 ~~G~~aP~F~l~~~~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~--v~vv~Is~D~-~~ 102 (221)
T 2c0d_A 26 LVTKKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKN--VELLGISVDS-VY 102 (221)
T ss_dssp CTTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTT--EEEEEEESSC-HH
T ss_pred CCCCCCCCeEEeccccCCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEeCCC-HH
Confidence 46899999955 66 89 99999999 9999999999 9999999999999999999999877 9999999985 44
Q ss_pred HHHHhhcCCC------CccccCCchhHHHHHHHcCc-----ccCCeEEEECCCCCccccch
Q 011791 154 SFKRDLGSMP------WLALPFKDKSREKLARYFEL-----STLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 154 ~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~v-----~~~P~~~lid~~G~i~~~~~ 203 (477)
..+++.+... .+.+|+..+....+++.||+ ..+|+++|||++|+|++...
T Consensus 103 ~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~P~~~lID~~G~I~~~~~ 163 (221)
T 2c0d_A 103 SHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVLYDNSFALRGLFIIDKNGCVRHQTV 163 (221)
T ss_dssp HHHHHHHSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEEE
T ss_pred HHHHHHHHhhhhcCccCCceEEEECCchHHHHHcCCcccCCCccceEEEECCCCeEEEEEe
Confidence 4555555441 23344444445678999999 47999999999999998764
|
| >3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A | Back alignment and structure |
|---|
Probab=99.73 E-value=9.1e-18 Score=149.75 Aligned_cols=121 Identities=22% Similarity=0.296 Sum_probs=99.2
Q ss_pred ccCcCC-Ccee-cCCCCeEecCCCCCCEEEEEEecCCCc-cchhhHHHHHHHHHHHhcCCCcEEEEEEEcC--CCHHHHH
Q 011791 82 LTSHSR-DFVI-SSDGRKISVSDLEGKTIGLYFSMSSYK-ASAEFTPRLVEVYEKLKGKGESFEIVLISLD--DEEESFK 156 (477)
Q Consensus 82 ~g~~~p-~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D--~~~~~~~ 156 (477)
+|.++| +|.+ +.+|+++++++++||+++|+||++||+ +|..+++.|+++++++++.+.+++||+||+| ++.+.++
T Consensus 3 ~G~~~P~~f~l~d~~G~~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~ 82 (170)
T 3me7_A 3 LGTYVPGDITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIK 82 (170)
T ss_dssp TTCBCCTTCEEEETTCCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHH
T ss_pred CCCcCCCCeEEEcCCcCEEchHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHH
Confidence 588999 9954 999999999999999999999999997 6999999999999999876666999999998 4567777
Q ss_pred HhhcCCC-----Cccc-cCCchhHHHHHHHcCc---------ccCCeEEEECCCCCccccc
Q 011791 157 RDLGSMP-----WLAL-PFKDKSREKLARYFEL---------STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 157 ~~~~~~~-----~~~~-~~~~~~~~~l~~~~~v---------~~~P~~~lid~~G~i~~~~ 202 (477)
++.+++. |..+ ....+....+++.||+ ...|+++|||++|+++...
T Consensus 83 ~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~ 143 (170)
T 3me7_A 83 RFQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYI 143 (170)
T ss_dssp HHHHHTTCCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEE
T ss_pred HHHHHcCCCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEEE
Confidence 7777543 4332 2333455678888774 5679999999999998653
|
| >3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A | Back alignment and structure |
|---|
Probab=99.73 E-value=8e-18 Score=151.50 Aligned_cols=124 Identities=13% Similarity=0.148 Sum_probs=94.7
Q ss_pred hhhhccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC------
Q 011791 78 LRSVLTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD------ 150 (477)
Q Consensus 78 ~~~~~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~------ 150 (477)
.++..|..+|+|.+ +.+|+.+++++++||+|+|+|||+||++|+.++|.|.+++++|+++| ++||+|++|.
T Consensus 10 ~~~~~~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~--~~vi~is~d~~~~~~~ 87 (180)
T 3kij_A 10 FLKPKINSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSH--FSVLAFPCNQFGESEP 87 (180)
T ss_dssp CCCCCCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTS--EEEEEEECCCSTTCCC
T ss_pred hhcCCcCcccceEEecCCCCEecHHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCC--eEEEEEECCccccCCC
Confidence 44567889999954 99999999999999999999999999999999999999999999887 9999999875
Q ss_pred -CHHHHHHhhcC-C--CCcccc--CCchh-HHHHHHHc--CcccCCe----EEEECCCCCccccch
Q 011791 151 -EEESFKRDLGS-M--PWLALP--FKDKS-REKLARYF--ELSTLPT----LVIIGPDGKTLHSNV 203 (477)
Q Consensus 151 -~~~~~~~~~~~-~--~~~~~~--~~~~~-~~~l~~~~--~v~~~P~----~~lid~~G~i~~~~~ 203 (477)
+.+.+++++++ . ++..+. ...+. ...+...+ .+.++|+ ++|||++|+++.+..
T Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~ 153 (180)
T 3kij_A 88 RPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWR 153 (180)
T ss_dssp SCHHHHHHHHHHHHCCCSCBBCCCCCSSTTCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEEC
T ss_pred CCHHHHHHHHHHhcCCCCceeeeeeccCccccHHHHHHHhcCCCCccccceEEEECCCCCEEEEEC
Confidence 67777777765 3 222221 11111 11111211 1246888 999999999988753
|
| >4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A | Back alignment and structure |
|---|
Probab=99.73 E-value=7.1e-19 Score=156.01 Aligned_cols=118 Identities=17% Similarity=0.247 Sum_probs=97.8
Q ss_pred ccCcCCCcee-cCCCCeEecCCC--CCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHH
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDL--EGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKR 157 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l--~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~ 157 (477)
+|.++|+|.+ +.+|++++++++ +||+++|+|| ++||++|+.++|.|++++++|++.| +++++||.| +.+..++
T Consensus 7 vG~~aPdF~l~~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~--v~vv~is~d-~~~~~~~ 83 (164)
T 4gqc_A 7 LGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKAN--AEVLAISVD-SPWCLKK 83 (164)
T ss_dssp TTSBCCCCEEEBTTSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSS--SEEEEEESS-CHHHHHH
T ss_pred CCCCCcCcEeECCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccC--ceEEEecCC-CHHHHHH
Confidence 5899999955 999999999998 8999888887 9999999999999999999999988 999999998 4555666
Q ss_pred hhcCCCCccccCCchhHHHHHHHcCcc----------cCCeEEEECCCCCccccch
Q 011791 158 DLGSMPWLALPFKDKSREKLARYFELS----------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~v~----------~~P~~~lid~~G~i~~~~~ 203 (477)
+.++.. +.+|...+...++++.||+. ..|+++|||++|+|++...
T Consensus 84 ~~~~~~-~~fp~l~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~ 138 (164)
T 4gqc_A 84 FKDENR-LAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWV 138 (164)
T ss_dssp HHHHTT-CCSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEE
T ss_pred HHHhcC-cccceeecCchHHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEEEE
Confidence 666443 23444445556789999983 4799999999999988754
|
| >1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A | Back alignment and structure |
|---|
Probab=99.73 E-value=4.1e-18 Score=150.00 Aligned_cols=119 Identities=9% Similarity=0.162 Sum_probs=99.4
Q ss_pred hccCcCCCcee-cCCCCeEecCCCCCC-EEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHH
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSDLEGK-TIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKR 157 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~l~gk-~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~ 157 (477)
.+|.++|+|.+ +.+|+.+++++++|| +++|+|| ++||++|+.++|.|.+++++|++.+ ++||+|++| +.+..++
T Consensus 10 ~~G~~~p~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--~~vv~is~d-~~~~~~~ 86 (160)
T 1xvw_A 10 NVGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDD--SAALAISVG-PPPTHKI 86 (160)
T ss_dssp CTTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSS--EEEEEEESC-CHHHHHH
T ss_pred CCCCCCCCeEeEcCCCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--cEEEEEeCC-CHHHHHH
Confidence 46899999954 899999999999998 9999998 9999999999999999999998766 999999998 4566777
Q ss_pred hhcCCCCccccCCchh--HHHHHHHcCcc----cCC--eEEEECCCCCccccch
Q 011791 158 DLGSMPWLALPFKDKS--REKLARYFELS----TLP--TLVIIGPDGKTLHSNV 203 (477)
Q Consensus 158 ~~~~~~~~~~~~~~~~--~~~l~~~~~v~----~~P--~~~lid~~G~i~~~~~ 203 (477)
+++++.+ .++...+. ...+.+.|++. ++| +++|+|++|+++....
T Consensus 87 ~~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~~~ 139 (160)
T 1xvw_A 87 WATQSGF-TFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEM 139 (160)
T ss_dssp HHHHHTC-CSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEE
T ss_pred HHHhcCC-CceEEecCCcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEEEe
Confidence 7765442 23333332 45688999998 999 9999999999998764
|
| >1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.73 E-value=9.1e-18 Score=152.04 Aligned_cols=119 Identities=18% Similarity=0.212 Sum_probs=98.3
Q ss_pred ccCcCCCcee-cCCCC----eEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHH
Q 011791 82 LTSHSRDFVI-SSDGR----KISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESF 155 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~----~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~ 155 (477)
+|.++|+|.+ +.+|+ .+++++++||+++|+|| ++||++|+.++|.|.+++++|++++ ++||+|++|. .+..
T Consensus 3 ~G~~~P~f~l~~~~g~~~~~~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~vs~d~-~~~~ 79 (187)
T 1we0_A 3 IGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLG--VEVYSVSTDT-HFVH 79 (187)
T ss_dssp TTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTT--EEEEEEESSC-HHHH
T ss_pred CCCcCCCeEEeccCCCccceEecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcC--CEEEEEECCC-HHHH
Confidence 5889999954 88888 99999999999999999 9999999999999999999999876 9999999986 4455
Q ss_pred HHhhcCCC---CccccCCchhHHHHHHHcCcc------cCCeEEEECCCCCccccch
Q 011791 156 KRDLGSMP---WLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 156 ~~~~~~~~---~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~ 203 (477)
+++.+.+. -+.++...+....+++.|++. .+|+++|+|++|+++....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~~~ 136 (187)
T 1we0_A 80 KAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEI 136 (187)
T ss_dssp HHHHHSCHHHHTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEE
T ss_pred HHHHHHhccccCCCceEEECCchHHHHHhCCCcCCCCceeeEEEEECCCCeEEEEEe
Confidence 66655441 122333333446788999998 9999999999999998764
|
| >2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A | Back alignment and structure |
|---|
Probab=99.73 E-value=6.9e-18 Score=152.85 Aligned_cols=117 Identities=15% Similarity=0.191 Sum_probs=99.0
Q ss_pred hccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC-------CCH
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------DEE 152 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D-------~~~ 152 (477)
.+|.++|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.+++++|+++ ++||+|++| ++.
T Consensus 8 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~---~~~v~v~~d~~~~~~~d~~ 84 (188)
T 2cvb_A 8 PLESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK---VAFVGINANDYEKYPEDAP 84 (188)
T ss_dssp CTTCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT---EEEEEEECCCTTTCGGGSH
T ss_pred CCCCCCCCceeecCCCCEEeHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcC---eEEEEEEcCccccccccCH
Confidence 35889999955 8999999999999999999999999999999999999999999865 999999996 456
Q ss_pred HHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCcccc
Q 011791 153 ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 201 (477)
+.+.++++.+. +.++...+....+++.|++.++|+++|+|++|+++.+
T Consensus 85 ~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 132 (188)
T 2cvb_A 85 EKMAAFAEEHG-IFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYH 132 (188)
T ss_dssp HHHHHHHHHHT-CCSCEEECSSSHHHHHTTCCEESEEEEECTTCBEEEE
T ss_pred HHHHHHHHHhC-CCceEEECCcchHHHHcCCCCCCeEEEECCCCcEEEE
Confidence 77777777544 2233333444568899999999999999999999887
|
| >4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=148.87 Aligned_cols=125 Identities=20% Similarity=0.294 Sum_probs=97.3
Q ss_pred hhhhccCcCCCce-ecCCCCeEecCCCCCCEEEEEEecCCCc-cchhhHHHHHHHHHHHhcCCCcEEEEEEEcC---CCH
Q 011791 78 LRSVLTSHSRDFV-ISSDGRKISVSDLEGKTIGLYFSMSSYK-ASAEFTPRLVEVYEKLKGKGESFEIVLISLD---DEE 152 (477)
Q Consensus 78 ~~~~~g~~~p~fl-~~~~g~~v~ls~l~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D---~~~ 152 (477)
+..-+|.++|+|. .|.+|+++++++++||+|+|+||++||+ +|...++.|.++++.+++.+.++++|+||+| ++.
T Consensus 4 ~~~P~~~~~PdF~L~d~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp 83 (170)
T 4hde_A 4 LRKPLNWDLETFQFTNQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKP 83 (170)
T ss_dssp CCSCCCBCCCCCEEECTTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCH
T ss_pred cccCCCCcCCCcEEECCCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcccccH
Confidence 3445788999995 5999999999999999999999999997 8999999999999999988878999999998 356
Q ss_pred HHHHHhhcCC-----CCccccCCch-h-HHHHHHHcC----------cccCCeEEEECCCCCccccc
Q 011791 153 ESFKRDLGSM-----PWLALPFKDK-S-REKLARYFE----------LSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 153 ~~~~~~~~~~-----~~~~~~~~~~-~-~~~l~~~~~----------v~~~P~~~lid~~G~i~~~~ 202 (477)
+.++++.+.+ .|..+..... . .......|+ +.+.|+++|||++|+++...
T Consensus 84 ~~l~~y~~~~~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~ 150 (170)
T 4hde_A 84 ENLKAFIQKFTEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKY 150 (170)
T ss_dssp HHHHHHHTTTCSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEE
T ss_pred HHHHHHHHHcCCCCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEE
Confidence 7778877754 3554543322 1 122223343 34568999999999998653
|
| >2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.73 E-value=8.5e-18 Score=152.95 Aligned_cols=119 Identities=18% Similarity=0.225 Sum_probs=99.8
Q ss_pred ccCcCCCcee-cC--CC--CeEecCCC-CCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHH
Q 011791 82 LTSHSRDFVI-SS--DG--RKISVSDL-EGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEES 154 (477)
Q Consensus 82 ~g~~~p~fl~-~~--~g--~~v~ls~l-~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~ 154 (477)
+|.++|+|.+ +. +| +.++++++ +||+++|+|| ++||++|+.++|.|.+++++|++++ ++||+||+|+ .+.
T Consensus 2 ~G~~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~Is~d~-~~~ 78 (192)
T 2h01_A 2 FQGQAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERN--VELLGCSVDS-KFT 78 (192)
T ss_dssp CSSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTT--EEEEEEESSC-HHH
T ss_pred CCCcCCCcEeEeeecCCceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEEeCC-HHH
Confidence 5889999955 66 89 99999999 9999999999 9999999999999999999999877 9999999984 555
Q ss_pred HHHhhcCCC------CccccCCchhHHHHHHHcCcc-----cCCeEEEECCCCCccccch
Q 011791 155 FKRDLGSMP------WLALPFKDKSREKLARYFELS-----TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 155 ~~~~~~~~~------~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~i~~~~~ 203 (477)
..++.+.+. .+.+++..+....+++.|++. .+|+++|||++|++++...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~g~~~P~~~liD~~G~i~~~~~ 138 (192)
T 2h01_A 79 HLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVLIDKQGVVQHLLV 138 (192)
T ss_dssp HHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECCEEEEECTTSBEEEEEE
T ss_pred HHHHHHhHHhhCCccCCCcCeEECCcHHHHHHhCCcCcCCceeeEEEEEcCCCEEEEEEe
Confidence 666666541 234444444456789999999 8999999999999998764
|
| >2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-17 Score=152.40 Aligned_cols=123 Identities=18% Similarity=0.262 Sum_probs=99.3
Q ss_pred hhccCcC--CCcee-cCCCCeEecCCCCCCEEEEEEecCCCcc-chhhHHHHHHHHHHHhcC-CCcEEEEEEEcCC---C
Q 011791 80 SVLTSHS--RDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKA-SAEFTPRLVEVYEKLKGK-GESFEIVLISLDD---E 151 (477)
Q Consensus 80 ~~~g~~~--p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~-C~~~~p~l~~l~~~~~~~-g~~~~vv~is~D~---~ 151 (477)
..+|.++ |+|.+ +.+|+.+++++++||+++|+||++||++ |+.++|.|.++++++.++ +.+++||+|++|. +
T Consensus 13 ~~~g~~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~ 92 (200)
T 2b7k_A 13 RGYGKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDS 92 (200)
T ss_dssp ---CCCCCCCCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCC
T ss_pred hccCCCCcCCCEEEEcCCCCEEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCC
Confidence 4567775 99954 8999999999999999999999999998 999999999999999864 3349999999994 6
Q ss_pred HHHHHHhhcCC--CCccccCCchhHHHHHHHcCcc-cCC---------------eEEEECCCCCccccc
Q 011791 152 EESFKRDLGSM--PWLALPFKDKSREKLARYFELS-TLP---------------TLVIIGPDGKTLHSN 202 (477)
Q Consensus 152 ~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~v~-~~P---------------~~~lid~~G~i~~~~ 202 (477)
.+.++++++.+ +|..++...+....+++.||+. ..| +++|||++|+++...
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~ 161 (200)
T 2b7k_A 93 PAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDAL 161 (200)
T ss_dssp HHHHHHHHTTSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEE
T ss_pred HHHHHHHHHHcCCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEe
Confidence 77788888865 4766766666667888999986 344 889999999998765
|
| >3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.8e-18 Score=154.47 Aligned_cols=115 Identities=15% Similarity=0.169 Sum_probs=94.3
Q ss_pred ccCcCCCce-ecCCCCeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhh
Q 011791 82 LTSHSRDFV-ISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 159 (477)
Q Consensus 82 ~g~~~p~fl-~~~~g~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~ 159 (477)
+|.++|+|. .+.+|+++++++++||+++|+|| ++||++|+.++|.|++++++|+++| ++||+|+.|. .+..++++
T Consensus 27 ig~~aP~f~l~~~~G~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~--~~vv~Vs~D~-~~~~~~~~ 103 (179)
T 3ixr_A 27 LNHSLLNHPLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQIN--ATVLGVSRDS-VKSHDSFC 103 (179)
T ss_dssp CCHHHHHCCEEEGGGEEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTT--EEEEEEESCC-HHHHHHHH
T ss_pred cCCcCCCeeEECCCCCEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCC-HHHHHHHH
Confidence 344599995 48999999999999999999998 9999999999999999999999887 9999999984 45566666
Q ss_pred cC--CCCccccCCchhHHHHHHHcCccc------------CCeEEEECCCCCccccc
Q 011791 160 GS--MPWLALPFKDKSREKLARYFELST------------LPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 160 ~~--~~~~~~~~~~~~~~~l~~~~~v~~------------~P~~~lid~~G~i~~~~ 202 (477)
++ ++|..+ .+....+++.|++.. +|+++|||++|+|+...
T Consensus 104 ~~~~~~f~~l---~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~~ 157 (179)
T 3ixr_A 104 AKQGFTFPLV---SDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEAW 157 (179)
T ss_dssp HHHTCCSCEE---ECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEEE
T ss_pred HHcCCceEEE---ECCchHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEEE
Confidence 64 344333 334457889999853 69999999999998764
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=142.23 Aligned_cols=113 Identities=15% Similarity=0.178 Sum_probs=98.0
Q ss_pred cCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcC
Q 011791 83 TSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGS 161 (477)
Q Consensus 83 g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~ 161 (477)
+.++|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.+++++++ + +.+++|+.|.+.+.++++++.
T Consensus 2 ~~~~p~~~~~~~~g~~~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~--~--~~~~~v~~~~~~~~~~~~~~~ 77 (136)
T 1zzo_A 2 VPAQLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP--E--VTFVGVAGLDQVPAMQEFVNK 77 (136)
T ss_dssp CCGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEECSSCHHHHHHHHHH
T ss_pred CCCCCCcccccCCCCEeeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC--C--eEEEEEeCCCCHHHHHHHHHH
Confidence 457889854 89999999999999999999999999999999999999999987 3 899999999999999999887
Q ss_pred CCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCcc
Q 011791 162 MPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 199 (477)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~ 199 (477)
+....++...+....+.+.|++.++|+++++|++|+++
T Consensus 78 ~~~~~~~~~~d~~~~~~~~~~i~~~P~~~~id~~g~i~ 115 (136)
T 1zzo_A 78 YPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVD 115 (136)
T ss_dssp TTCTTSEEEECTTCHHHHHTTCCSSSEEEEECTTCCEE
T ss_pred cCCCceEEEEcCCcHHHHHcCCCCCceEEEECCCCCEE
Confidence 65324444434456788999999999999999999987
|
| >1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-17 Score=147.59 Aligned_cols=117 Identities=15% Similarity=0.132 Sum_probs=95.5
Q ss_pred ccCcCCCcee-cCCCCeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhh
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 159 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~ 159 (477)
+|.++|+|.+ +.+|+.+++++++||+++|+|| ++||++|+.++|.|++++++| .+ ++||+||.|+ .+..+++.
T Consensus 19 ~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~--v~vv~Is~d~-~~~~~~~~ 93 (165)
T 1q98_A 19 VGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--SN--TIVLCISADL-PFAQARFC 93 (165)
T ss_dssp TTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS--TT--EEEEEEESSC-HHHHTTCT
T ss_pred CCCCCCCeEEECCCCCEEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc--CC--CEEEEEeCCC-HHHHHHHH
Confidence 5888999954 8999999999999999999999 899999999999999999999 45 9999999984 55566666
Q ss_pred cCCCCccccCCchh-HHHHHHHcCccc---------CCeEEEECCCCCccccch
Q 011791 160 GSMPWLALPFKDKS-REKLARYFELST---------LPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 160 ~~~~~~~~~~~~~~-~~~l~~~~~v~~---------~P~~~lid~~G~i~~~~~ 203 (477)
++...-.++...+. ...+++.||+.. +|+++|||++|++++...
T Consensus 94 ~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~ 147 (165)
T 1q98_A 94 GAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQL 147 (165)
T ss_dssp TTTTCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEE
T ss_pred HHcCCCceEEeeccccchHHHHhCceecccccCCccceeEEEEcCCCEEEEEEe
Confidence 65442123333333 466889999853 599999999999998764
|
| >3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D | Back alignment and structure |
|---|
Probab=99.72 E-value=9e-18 Score=156.49 Aligned_cols=121 Identities=14% Similarity=0.213 Sum_probs=97.0
Q ss_pred hhccCcCCCcee----cCCCCeEecCCCCCCEEEEEEec-CCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHH
Q 011791 80 SVLTSHSRDFVI----SSDGRKISVSDLEGKTIGLYFSM-SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEES 154 (477)
Q Consensus 80 ~~~g~~~p~fl~----~~~g~~v~ls~l~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~ 154 (477)
-.+|.++|+|.+ +.+|+++++++++||+|+|+||+ +||++|+.++|.|++++++|+++| ++||+|++|.. +.
T Consensus 40 l~~G~~aP~f~l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~--v~vv~Is~D~~-~~ 116 (222)
T 3ztl_A 40 LLPNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRN--CQVIACSTDSQ-YS 116 (222)
T ss_dssp CCSSEECCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCH-HH
T ss_pred ccCCCCCCCeEEecccCCCCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEECCCH-HH
Confidence 356999999954 45669999999999999999997 999999999999999999999887 99999999863 33
Q ss_pred HHHhhcCC------CCccccCCchhHHHHHHHcCcc------cCCeEEEECCCCCccccch
Q 011791 155 FKRDLGSM------PWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 155 ~~~~~~~~------~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~ 203 (477)
..++.+.+ ..+.++...+....+.+.|++. .+|+++|||++|+|+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~~ 177 (222)
T 3ztl_A 117 HLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQITI 177 (222)
T ss_dssp HHHHHHSCGGGTSCCSCSSCEEECSSSHHHHHTTCBCTTTSSBCEEEEEECTTSEEEEEEE
T ss_pred HHHHHHHhhhhccccccceeEEeCCchHHHHHcCCeecCCCCccceEEEECCCCeEEEEEe
Confidence 33333322 1233444434446789999998 8999999999999998764
|
| >2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-17 Score=147.71 Aligned_cols=120 Identities=13% Similarity=0.234 Sum_probs=92.4
Q ss_pred ccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC-------CCHH
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------DEEE 153 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D-------~~~~ 153 (477)
.|.++|+|.+ +.+|+.+++++++||+|+|+||++||++|+.++|.|++++++|++++ ++||+|++| ++.+
T Consensus 8 ~g~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~vs~d~~~~~~~~~~~ 85 (170)
T 2p5q_A 8 NPESVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQG--LEILAFPCNQFGEEEPGTND 85 (170)
T ss_dssp --CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCTTTTCCCSCHH
T ss_pred CCccccceEEEcCCCCEecHHHhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCC--EEEEEEECCCCCCCCCCCHH
Confidence 5888999954 99999999999999999999999999999999999999999999877 999999997 3566
Q ss_pred HHHHhhc-C--CCCcccc--CCch-hHHHHH-----HHcCc--ccCC---eEEEECCCCCccccch
Q 011791 154 SFKRDLG-S--MPWLALP--FKDK-SREKLA-----RYFEL--STLP---TLVIIGPDGKTLHSNV 203 (477)
Q Consensus 154 ~~~~~~~-~--~~~~~~~--~~~~-~~~~l~-----~~~~v--~~~P---~~~lid~~G~i~~~~~ 203 (477)
.++++++ . .+|..+. +... ....+. +.+++ .++| +++|||++|+++.+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~ 151 (170)
T 2p5q_A 86 QITDFVCTRFKSEFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYY 151 (170)
T ss_dssp HHHHHHHHHTCCCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEEC
T ss_pred HHHHHHHHhcCCCceeEeeeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeC
Confidence 7777766 3 2333331 1111 111122 23466 7788 9999999999998753
|
| >1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-17 Score=152.12 Aligned_cols=119 Identities=15% Similarity=0.208 Sum_probs=99.6
Q ss_pred ccCcCCCcee-cC--CCC---eEecCCC-CCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHH
Q 011791 82 LTSHSRDFVI-SS--DGR---KISVSDL-EGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEE 153 (477)
Q Consensus 82 ~g~~~p~fl~-~~--~g~---~v~ls~l-~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~ 153 (477)
+|.++|+|.+ +. +|+ +++++++ +||+++|+|| ++||++|+.++|.|.+++++|++++ ++||+|++|. .+
T Consensus 3 ~G~~~P~f~l~~~~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~Is~d~-~~ 79 (198)
T 1zof_A 3 VTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKG--FNVIGVSIDS-EQ 79 (198)
T ss_dssp TTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTT--EEEEEEESSC-HH
T ss_pred CCCcCCceEeecccCCCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcC--CEEEEEECCC-HH
Confidence 5889999955 76 898 9999999 9999999999 9999999999999999999999877 9999999995 55
Q ss_pred HHHHhhcCC------CCccccCCchhHHHHHHHcCcc-----cCCeEEEECCCCCccccch
Q 011791 154 SFKRDLGSM------PWLALPFKDKSREKLARYFELS-----TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 154 ~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~i~~~~~ 203 (477)
..+++.+.+ ..+.++...+....+.+.|++. .+|+++|||++|+++....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~~ 140 (198)
T 1zof_A 80 VHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVI 140 (198)
T ss_dssp HHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETTTEECEEEEEEETTTEEEEEEE
T ss_pred HHHHHHHhhhhcccccCceeEEEECCchHHHHHhCCcccCCcccceEEEECCCCEEEEEEe
Confidence 666666651 1233444444456788999999 9999999999999988764
|
| >3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-17 Score=155.61 Aligned_cols=119 Identities=15% Similarity=0.167 Sum_probs=103.2
Q ss_pred hhccCCCccee----ccCCCceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHH
Q 011791 241 VLVSGDLDFVV----GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSF 315 (477)
Q Consensus 241 ~~~~~~p~f~l----~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~ 315 (477)
.++...|+|.+ +.+|++++|++++||++||+|| ++||++|..++|.|++++++|+++ +++||+|++| +....
T Consensus 63 ~vG~~aPdF~l~~l~d~~G~~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~--gv~vv~IS~D-~~~~~ 139 (254)
T 3tjj_A 63 KISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSI--NTEVVACSVD-SQFTH 139 (254)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTT--TEEEEEEESS-CHHHH
T ss_pred CCCCCCCCcEeeeecCCCCcEEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHc--CCEEEEEcCC-CHHHH
Confidence 34566799996 3367899999999999999999 999999999999999999999876 7999999998 45677
Q ss_pred HHHHhcC------CCceeccCcchhHHHHHhcCCC------CcceEEEECCCCcEEEec
Q 011791 316 DEFFKGM------PWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 316 ~~~~~~~------~~~~~p~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~iv~~~ 362 (477)
++|++.+ .-+.||++.|....+++.|++. .+|++||||++|+|+...
T Consensus 140 ~~~~~~~~~~~g~~~~~fp~l~D~~~~va~~ygv~~~~~g~~~p~tflID~~G~I~~~~ 198 (254)
T 3tjj_A 140 LAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQIT 198 (254)
T ss_dssp HHHHTSCGGGTSCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHHHHHHhcCCcccccceeeCcHHHHHHHcCCccccCCCccceEEEECCCCeEEEEE
Confidence 8888765 1378888889888999999996 589999999999999884
|
| >2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-17 Score=154.46 Aligned_cols=120 Identities=13% Similarity=0.161 Sum_probs=100.6
Q ss_pred hccCcCCCcee-cC--CC--CeEecCCC-CCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHH
Q 011791 81 VLTSHSRDFVI-SS--DG--RKISVSDL-EGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEE 153 (477)
Q Consensus 81 ~~g~~~p~fl~-~~--~g--~~v~ls~l-~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~ 153 (477)
.+|.++|+|.+ +. +| +.++++++ +||+++|+|| ++||++|+.++|.|.+++++|++++ ++||+||+| +.+
T Consensus 22 ~~G~~aP~f~l~~~~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~Is~D-~~~ 98 (213)
T 2i81_A 22 YVGKEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERN--VELLGCSVD-SKY 98 (213)
T ss_dssp CBTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTT--EEEEEEESS-CHH
T ss_pred cCCCcCCCeEeeccccCCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEeCC-CHH
Confidence 46899999955 66 89 89999999 9999999999 9999999999999999999999877 999999998 455
Q ss_pred HHHHhhcCCC------CccccCCchhHHHHHHHcCcc-----cCCeEEEECCCCCccccch
Q 011791 154 SFKRDLGSMP------WLALPFKDKSREKLARYFELS-----TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 154 ~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~i~~~~~ 203 (477)
..+++++... .+.+|+..+....+++.||+. .+|+++|||++|++++...
T Consensus 99 ~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~p~~~lID~~G~i~~~~~ 159 (213)
T 2i81_A 99 THLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLFDDSVSLRAFVLIDMNGIVQHLLV 159 (213)
T ss_dssp HHHHHHSSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEEE
T ss_pred HHHHHHHHHHhhCCccCCCceEEECCchHHHHHhCCccccCCcccEEEEECCCCEEEEEEe
Confidence 5666666441 234444444556789999999 8999999999999998764
|
| >2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-17 Score=151.21 Aligned_cols=119 Identities=11% Similarity=0.131 Sum_probs=97.3
Q ss_pred ccCcCCCcee-cCC-------------C--CeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEE
Q 011791 82 LTSHSRDFVI-SSD-------------G--RKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIV 144 (477)
Q Consensus 82 ~g~~~p~fl~-~~~-------------g--~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv 144 (477)
+|.++|+|.+ +.+ | +.+++++++||+++|+|| ++||++|+.++|.|.+++++|++++ ++||
T Consensus 6 ~G~~~P~f~l~~~~~~~~~~~~~~~~~G~~~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv 83 (195)
T 2bmx_A 6 IGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRD--AQIL 83 (195)
T ss_dssp TTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTT--EEEE
T ss_pred CCCcCCCcCcccccccccccccccccCCCccEeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCC--CEEE
Confidence 5889999954 555 7 899999999999999999 9999999999999999999999876 9999
Q ss_pred EEEcCCCHHHHHHhhcCCC---CccccCCchhHHHHHHHcCcc-----cCCeEEEECCCCCccccch
Q 011791 145 LISLDDEEESFKRDLGSMP---WLALPFKDKSREKLARYFELS-----TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 145 ~is~D~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~i~~~~~ 203 (477)
+|++|. .+..+++.+.+. -+.++...+....+.+.|++. .+|+++|+|++|+++....
T Consensus 84 ~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~~ 149 (195)
T 2bmx_A 84 GVSIDS-EFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFVSA 149 (195)
T ss_dssp EEESSC-HHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEEEE
T ss_pred EEECCC-HHHHHHHHHHhccccCCceeEEeCCchHHHHHhCCcccCCCccceEEEEcCCCeEEEEEe
Confidence 999986 455555555441 122333333446788999999 9999999999999998764
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.55 E-value=5.3e-19 Score=155.60 Aligned_cols=119 Identities=21% Similarity=0.294 Sum_probs=100.4
Q ss_pred ccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHH-HHHHHh-cCCCcEEEEEEEcCCCHHHHHHh
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVE-VYEKLK-GKGESFEIVLISLDDEEESFKRD 158 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~-l~~~~~-~~g~~~~vv~is~D~~~~~~~~~ 158 (477)
+|.++|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.+ ++++++ +.+ +.+++|++|.+.+.++++
T Consensus 9 ~g~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~--~~vv~v~~d~~~~~~~~~ 86 (159)
T 2ls5_A 9 IGEMAPDFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNAD--FALIGIDRDEPLEKVLAF 86 (159)
Confidence 5788999954 89999999999999999999999999999999999998 999987 545 999999999877777777
Q ss_pred hcCCCCccccCCchhHHHHHHHcC--cccCCeEEEECCCCCccccch
Q 011791 159 LGSMPWLALPFKDKSREKLARYFE--LSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~--v~~~P~~~lid~~G~i~~~~~ 203 (477)
.+.+.+ .+|...+....+.+.|+ +.++|+++|+|++|+++....
T Consensus 87 ~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~~ 132 (159)
T 2ls5_A 87 AKSTGV-TYPLGLDPGADIFAKYALRDAGITRNVLIDREGKIVKLTR 132 (159)
Confidence 776542 44555555677889999 466999999999999987653
|
| >2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-17 Score=146.12 Aligned_cols=121 Identities=14% Similarity=0.195 Sum_probs=91.9
Q ss_pred hccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC-------CH
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EE 152 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~-------~~ 152 (477)
..|.++|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|++++++|++++ ++||+|++|. +.
T Consensus 6 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~d~~~~~~~~~~ 83 (169)
T 2v1m_A 6 KSWNSIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKG--LRILAFPCNQFGGQEPWAE 83 (169)
T ss_dssp -CCCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCCSTTCCCSCH
T ss_pred cCCcccccceeecCCCCCccHHHcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCC--eEEEEEECCccCCCCCCCH
Confidence 36889999954 99999999999999999999999999999999999999999999877 9999999973 45
Q ss_pred HHHHHhh-cC--CCCcccc--CCchh-HHHHHH-----HcC-----cccCCeEEEECCCCCccccch
Q 011791 153 ESFKRDL-GS--MPWLALP--FKDKS-REKLAR-----YFE-----LSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 153 ~~~~~~~-~~--~~~~~~~--~~~~~-~~~l~~-----~~~-----v~~~P~~~lid~~G~i~~~~~ 203 (477)
+..++++ +. .+|..+. +.... ...+.+ .+| +..+|+++|||++|+++.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~ 150 (169)
T 2v1m_A 84 AEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYS 150 (169)
T ss_dssp HHHHHHHHHHHCCCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEEC
T ss_pred HHHHHHHHHhcCCCCceEEEEeecCccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcC
Confidence 6666663 43 3444332 11111 111111 125 556799999999999998753
|
| >2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-17 Score=149.87 Aligned_cols=120 Identities=12% Similarity=0.106 Sum_probs=91.7
Q ss_pred hccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC-------CH
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EE 152 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~-------~~ 152 (477)
.+|.++|+|.+ +.+|+++++++++||+++|+||++||++|+.++|.|++++++|++++ ++||+|++|. +.
T Consensus 24 ~~g~~~p~f~l~~~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~--v~vv~vs~d~~~~~e~~~~ 101 (181)
T 2p31_A 24 QQEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHH--FNVLAFPCNQFGQQEPDSN 101 (181)
T ss_dssp ---CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCCSTTCCCSCH
T ss_pred CcCCccCceEeecCCCCEecHHHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCC--EEEEEEECcCCCCCCCCCH
Confidence 35888999955 99999999999999999999999999999999999999999999887 9999999984 56
Q ss_pred HHHHHhhcC-C--CCcccc--CCchhH-HHHHHHcCcccCC-------eEEEECCCCCccccch
Q 011791 153 ESFKRDLGS-M--PWLALP--FKDKSR-EKLARYFELSTLP-------TLVIIGPDGKTLHSNV 203 (477)
Q Consensus 153 ~~~~~~~~~-~--~~~~~~--~~~~~~-~~l~~~~~v~~~P-------~~~lid~~G~i~~~~~ 203 (477)
+.+++++++ . +|..+. +..+.. ..+ -.|++..+| +++|||++|+++.+..
T Consensus 102 ~~~~~~~~~~~~~~~p~~~~~d~~g~~~~~~-~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~ 164 (181)
T 2p31_A 102 KEIESFARRTYSVSFPMFSKIAVTGTGAHPA-FKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWD 164 (181)
T ss_dssp HHHHHHHHHHHCCCSCBBCCCCCSSTTSCHH-HHHHHHHHSCCCCSTTCEEEECTTSCEEEEEC
T ss_pred HHHHHHHHhhcCCCceeEeecccCCccchhh-hhhhhhcCCCccccceeEEEEcCCCCEEEEeC
Confidence 677777654 3 333332 111111 111 134567788 9999999999988753
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-17 Score=141.71 Aligned_cols=110 Identities=15% Similarity=0.179 Sum_probs=95.0
Q ss_pred cCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCC
Q 011791 85 HSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMP 163 (477)
Q Consensus 85 ~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~ 163 (477)
++|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.+++++++ + +.++.|+.|.+.+.+++++++++
T Consensus 3 ~~p~~~l~~~~g~~~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~--~~~~~v~~~~~~~~~~~~~~~~~ 78 (136)
T 1lu4_A 3 ERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP--A--VTFVGIATRADVGAMQSFVSKYN 78 (136)
T ss_dssp GGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEECSSCHHHHHHHHHHHT
T ss_pred CCCCeEeecCCCCeecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC--C--cEEEEEEcCCCHHHHHHHHHHcC
Confidence 5788854 89999999999999999999999999999999999999999997 3 89999999998888988888654
Q ss_pred CccccCCchhHHHHHHHcCcccCCeEEEECCCCCcc
Q 011791 164 WLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 199 (477)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~ 199 (477)
+ .++...+....+.+.|++.++|+++++|++|+++
T Consensus 79 ~-~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~ 113 (136)
T 1lu4_A 79 L-NFTNLNDADGVIWARYNVPWQPAFVFYRADGTST 113 (136)
T ss_dssp C-CSEEEECTTSHHHHHTTCCSSSEEEEECTTSCEE
T ss_pred C-CceEEECCchhHHHhcCCCCCCEEEEECCCCcEE
Confidence 2 2333334445688999999999999999999987
|
| >2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.8e-18 Score=154.28 Aligned_cols=119 Identities=18% Similarity=0.300 Sum_probs=99.7
Q ss_pred hccCcCCCc-ee-cCCCCeEecCCCCCC-EEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC-------C
Q 011791 81 VLTSHSRDF-VI-SSDGRKISVSDLEGK-TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------D 150 (477)
Q Consensus 81 ~~g~~~p~f-l~-~~~g~~v~ls~l~gk-~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D-------~ 150 (477)
.+|.++|+| +. +.+|+.+++++++|| +++|+||++||++|+.++|.|.+++++|++++ +.||+|++| +
T Consensus 19 ~~g~~~p~f~l~~~~~G~~~~l~~~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~v~~d~~~~~~~d 96 (196)
T 2ywi_A 19 PLGKQAPPFALTNVIDGNVVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKG--VSFVAINSNDAEQYPED 96 (196)
T ss_dssp CTTCBCCCCEEEETTTCCEEEHHHHCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGT--CEEEEEECSCTTTCGGG
T ss_pred CcCCcCCceeeeecCCCCEEeHHHhCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCC--cEEEEEECCcccccccc
Confidence 358889999 55 799999999999998 59999999999999999999999999999876 999999997 4
Q ss_pred CHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccc
Q 011791 151 EEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 202 (477)
+.+.++++++.+. +.++...+....+++.|++.++|+++|+|++|+++++.
T Consensus 97 ~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 147 (196)
T 2ywi_A 97 SPENMKKVAEELG-YPFPYLYDETQEVAKAYDAACTPDFYIFDRDLKCVYRG 147 (196)
T ss_dssp SHHHHHHHHHHHT-CCSCEEECSSCHHHHHHTCCEESEEEEEETTCBEEEEE
T ss_pred CHHHHHHHHHHcC-CCceEEECCchHHHHHhCCCCCCeEEEEcCCCeEEEcc
Confidence 5677777777543 22333333445688999999999999999999998874
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A | Back alignment and structure |
|---|
Probab=99.71 E-value=8.3e-18 Score=148.44 Aligned_cols=111 Identities=16% Similarity=0.195 Sum_probs=96.1
Q ss_pred eecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC-----CCHHHHHHhhcCCCC
Q 011791 90 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-----DEEESFKRDLGSMPW 164 (477)
Q Consensus 90 l~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D-----~~~~~~~~~~~~~~~ 164 (477)
+.+.+|+.+++++++||+++|+||++||++|+.++|.|.+++++|+..+ +.||+|++| .+.+.+.+++..+.+
T Consensus 23 l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~ 100 (164)
T 2h30_A 23 MKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSS--ANLITVASPGFLHEKKDGEFQKWYAGLNY 100 (164)
T ss_dssp CEETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTT--SEEEEEECTTSTTCCCTTHHHHHHTTSCC
T ss_pred cCCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCC--cEEEEEEcCCCccccCHHHHHHHHHhCCC
Confidence 5588999999999999999999999999999999999999999998877 999999986 345678888887665
Q ss_pred ccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccc
Q 011791 165 LALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 202 (477)
..++...+....+++.|++.++|+++|+|++|+++...
T Consensus 101 ~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 138 (164)
T 2h30_A 101 PKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRIV 138 (164)
T ss_dssp TTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEE
T ss_pred CcceEEEcCchHHHHHcCCCccceEEEECCCCcEEEEE
Confidence 54555555556789999999999999999999998764
|
| >1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-17 Score=151.55 Aligned_cols=120 Identities=18% Similarity=0.221 Sum_probs=96.9
Q ss_pred hccCcCCCcee-cC-CC--CeEecCCCCCCEEEEEEec-CCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHH
Q 011791 81 VLTSHSRDFVI-SS-DG--RKISVSDLEGKTIGLYFSM-SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESF 155 (477)
Q Consensus 81 ~~g~~~p~fl~-~~-~g--~~v~ls~l~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~ 155 (477)
.+|.++|+|.+ +. +| +.+++++++||+|+|+||+ +||++|+.++|.|++++++|+++| ++||+||.|. .+..
T Consensus 2 ~~G~~aP~f~l~~~~~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~--v~vv~Is~d~-~~~~ 78 (186)
T 1n8j_A 2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLG--VDVYSVSTDT-HFTH 78 (186)
T ss_dssp CTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTT--EEEEEEESSC-HHHH
T ss_pred CCCCcCCCcEeecccCCcceEEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCC--CEEEEEECCC-HHHH
Confidence 36889999955 66 58 8999999999999999995 999999999999999999999877 9999999985 4445
Q ss_pred HHhhcCCC---CccccCCchhHHHHHHHcCcc------cCCeEEEECCCCCccccch
Q 011791 156 KRDLGSMP---WLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 156 ~~~~~~~~---~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~ 203 (477)
+++.+++. -+.++...+....+++.||+. .+|+++|||++|++++...
T Consensus 79 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~i~~~~~ 135 (186)
T 1n8j_A 79 KAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEV 135 (186)
T ss_dssp HHHHHHCTTGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEE
T ss_pred HHHHHHcCcccCCceeEEECCchHHHHHhCCccCCCCceeeEEEEECCCCeEEEEEe
Confidence 55555441 123333334456688999987 4799999999999998764
|
| >2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-17 Score=153.58 Aligned_cols=120 Identities=13% Similarity=0.179 Sum_probs=98.1
Q ss_pred hccCcCCCcee-c---CCCCeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHH
Q 011791 81 VLTSHSRDFVI-S---SDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESF 155 (477)
Q Consensus 81 ~~g~~~p~fl~-~---~~g~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~ 155 (477)
.+|.++|+|.+ + .+|+.+++++++||+++|+|| ++||++|+.++|.|++++++|++++ ++||+||+|. .+..
T Consensus 20 ~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~--v~vv~Is~D~-~~~~ 96 (211)
T 2pn8_A 20 FQSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSIN--TEVVACSVDS-QFTH 96 (211)
T ss_dssp CSSCBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTT--EEEEEEESSC-HHHH
T ss_pred CCCCcCCCeEeecccCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCC-HHHH
Confidence 46899999954 4 357899999999999999999 9999999999999999999999877 9999999984 4455
Q ss_pred HHhhcCC------CCccccCCchhHHHHHHHcCcc------cCCeEEEECCCCCccccch
Q 011791 156 KRDLGSM------PWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 156 ~~~~~~~------~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~ 203 (477)
+++++.+ ..+.+|+..+....+++.||+. .+|+++|||++|+|++...
T Consensus 97 ~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~I~~~~~ 156 (211)
T 2pn8_A 97 LAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITL 156 (211)
T ss_dssp HHHHTSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEE
T ss_pred HHHHHHhhhccCccCCceEEEECCchHHHHHcCCcccCCCcccceEEEECCCCEEEEEEe
Confidence 6666544 1234444444456789999994 6999999999999998764
|
| >3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-17 Score=151.48 Aligned_cols=117 Identities=15% Similarity=0.172 Sum_probs=96.6
Q ss_pred ccCcCCCcee-cCCCCeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhh
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 159 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~ 159 (477)
+|.++|+|.+ +.+|+.+++++++||+|+|+|| ++||++|+.++|.|+++|++| +| ++||+||.| +.+..+++.
T Consensus 54 ~G~~aPdf~l~d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~~--v~vv~Is~D-~~~~~~~~~ 128 (200)
T 3zrd_A 54 IGDKAKDFTLVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--EN--TVVLCISSD-LPFAQSRFC 128 (200)
T ss_dssp TTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--TT--EEEEEEESS-CHHHHTTCT
T ss_pred CCCCCCCeEEECCCCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--CC--CEEEEEECC-CHHHHHHHH
Confidence 5889999955 9999999999999999999999 679999999999999999999 45 999999998 455666676
Q ss_pred cCCCCccccCCchh-HHHHHHHcCcc---------cCCeEEEECCCCCccccch
Q 011791 160 GSMPWLALPFKDKS-REKLARYFELS---------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 160 ~~~~~~~~~~~~~~-~~~l~~~~~v~---------~~P~~~lid~~G~i~~~~~ 203 (477)
+....-.++...+. ...+.+.||+. .+|+++|||++|+|++...
T Consensus 129 ~~~~~~~f~~l~D~~~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I~~~~~ 182 (200)
T 3zrd_A 129 GAEGLSNVITLSTLRGADFKQAYGVAITEGPLAGLTARAVVVLDGQDNVIYSEL 182 (200)
T ss_dssp TTTTCTTEEEEETTSCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEE
T ss_pred HHcCCCCceEEecCchHHHHHHhCceeecccCCCccccEEEEECCCCeEEEEEe
Confidence 65542133443344 56789999985 3699999999999998764
|
| >2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A | Back alignment and structure |
|---|
Probab=99.71 E-value=5.5e-17 Score=151.77 Aligned_cols=117 Identities=19% Similarity=0.254 Sum_probs=101.5
Q ss_pred hccCCCccee-ccCCCceecccCCCC-EEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHH
Q 011791 242 LVSGDLDFVV-GKNGGKVPVSDLAGK-TILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 318 (477)
Q Consensus 242 ~~~~~p~f~l-~~~g~~~~l~~~~gk-~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~ 318 (477)
++...|+|.+ +.+| ++++++++|| ++||+|| ++||++|..+++.|++++++|+++ +++||+|++|. ....++|
T Consensus 5 iG~~aPdF~l~~~~G-~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~--~v~vigIS~D~-~~~~~~~ 80 (233)
T 2v2g_A 5 LGEVFPNFEADSTIG-KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKR--GVKLIALSCDN-VADHKEW 80 (233)
T ss_dssp TTCBCCCCEEEETTC-CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHT--TEEEEEEESSC-HHHHHHH
T ss_pred CCCCCCCcEEecCCC-CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHc--CCEEEEEcCCC-HHHHHHH
Confidence 4556799999 8899 9999999998 9999998 999999999999999999999876 79999999994 4556667
Q ss_pred Hh------cCC-CceeccCcchhHHHHHhcCCC------------CcceEEEECCCCcEEEec
Q 011791 319 FK------GMP-WLALPFGDARKASLSRKFKVS------------GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 319 ~~------~~~-~~~~p~~~d~~~~l~~~~~v~------------~~Pt~~lid~~G~iv~~~ 362 (477)
++ +.+ .++||++.|....+++.||+. .+|++||||++|+|+...
T Consensus 81 ~~~i~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~ 143 (233)
T 2v2g_A 81 SEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSI 143 (233)
T ss_dssp HHHHHHHHTCCSSCSSCEEECTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEE
T ss_pred HHHHHHhhCcccCCceEEEECChHHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEEEE
Confidence 76 442 478899889888999999985 589999999999999874
|
| >1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.3e-17 Score=151.92 Aligned_cols=117 Identities=18% Similarity=0.273 Sum_probs=97.9
Q ss_pred hccCCCccee-ccCCCceecccCCCC--EEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHH
Q 011791 242 LVSGDLDFVV-GKNGGKVPVSDLAGK--TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 318 (477)
Q Consensus 242 ~~~~~p~f~l-~~~g~~~~l~~~~gk--~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~ 318 (477)
++...|+|.+ +.+| ++++++++|| .||++||++||++|..+++.|++++++|+++ +++||+|++|. .+..++|
T Consensus 7 ~G~~aP~F~l~~~~G-~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~--~v~vi~IS~D~-~~~~~~~ 82 (224)
T 1prx_A 7 LGDVAPNFEANTTVG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKR--NVKLIALSIDS-VEDHLAW 82 (224)
T ss_dssp TTCBCCCCEEEETTE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTT--TEEEEEEESSC-HHHHHHH
T ss_pred CcCCCCCcEEecCCC-CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHC--CCEEEEEcCCC-HHHHHHH
Confidence 3556799999 8899 9999999997 5666678999999999999999999999876 79999999995 4455556
Q ss_pred Hhc---C------CCceeccCcchhHHHHHhcCCC------------CcceEEEECCCCcEEEec
Q 011791 319 FKG---M------PWLALPFGDARKASLSRKFKVS------------GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 319 ~~~---~------~~~~~p~~~d~~~~l~~~~~v~------------~~Pt~~lid~~G~iv~~~ 362 (477)
++. . ..++||+..|....+++.||+. .+|++||||++|+|+...
T Consensus 83 ~~~i~~~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~ 147 (224)
T 1prx_A 83 SKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSI 147 (224)
T ss_dssp HHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEE
T ss_pred HHHHHHhhCcccccCcCcceeecCchHHHHHhCCCCcccccCCCccccceEEEEECCCCEEEEEE
Confidence 653 0 2367888888888999999984 379999999999999884
|
| >2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A | Back alignment and structure |
|---|
Probab=99.71 E-value=5.8e-17 Score=149.35 Aligned_cols=120 Identities=15% Similarity=0.197 Sum_probs=89.9
Q ss_pred ccCcCCCcee-cCC-CCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC-------CH
Q 011791 82 LTSHSRDFVI-SSD-GRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EE 152 (477)
Q Consensus 82 ~g~~~p~fl~-~~~-g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~-------~~ 152 (477)
.+.++|+|.+ +.+ |+.+++++++||+|+|+|||+||++|+.++|.|++++++|+++| ++||+|++|. +.
T Consensus 22 ~~~~~p~f~l~~~~~G~~v~l~~~~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g--~~vv~v~~d~~~~~e~d~~ 99 (208)
T 2f8a_A 22 SMQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRG--LVVLGFPCNQFGHQENAKN 99 (208)
T ss_dssp CCCCGGGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCCSTTTTCSCH
T ss_pred hcCccCceEeeeCCCCCCccHHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCC--eEEEEEECCcccccCCCCH
Confidence 3567899954 888 99999999999999999999999999999999999999999887 9999999972 34
Q ss_pred HHHHHhhc------CCC--CccccC--Cchh-----HHHHHHHc-------------------------CcccCCeEEEE
Q 011791 153 ESFKRDLG------SMP--WLALPF--KDKS-----REKLARYF-------------------------ELSTLPTLVII 192 (477)
Q Consensus 153 ~~~~~~~~------~~~--~~~~~~--~~~~-----~~~l~~~~-------------------------~v~~~P~~~li 192 (477)
+..+++++ ++. +..+.. ..+. -..+...+ ++..+|+++||
T Consensus 100 ~~i~~f~~~~~~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflI 179 (208)
T 2f8a_A 100 EEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLV 179 (208)
T ss_dssp HHHHHHHHHTSSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEE
T ss_pred HHHHHHHHhcccccccccceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEE
Confidence 66677765 332 222210 0010 11121122 25667999999
Q ss_pred CCCCCccccch
Q 011791 193 GPDGKTLHSNV 203 (477)
Q Consensus 193 d~~G~i~~~~~ 203 (477)
|++|+++.+..
T Consensus 180 D~~G~i~~~~~ 190 (208)
T 2f8a_A 180 GPDGVPLRRYS 190 (208)
T ss_dssp CTTSCEEEEEC
T ss_pred cCCCcEEEEeC
Confidence 99999988753
|
| >2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.9e-17 Score=146.13 Aligned_cols=121 Identities=12% Similarity=0.136 Sum_probs=94.5
Q ss_pred hccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC-------CH
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EE 152 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~-------~~ 152 (477)
.+|.++|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|++++++|++++ ++||+|++|. +.
T Consensus 22 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~--v~vv~vs~d~~~~~e~~~~ 99 (183)
T 2obi_A 22 RCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECG--LRILAFPCNQFGKQEPGSN 99 (183)
T ss_dssp GGCCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCCSTTCCCSCH
T ss_pred cccCcccceEEEcCCCCEeeHHHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCC--eEEEEEECCCCCCCCCCCH
Confidence 46889999954 99999999999999999999999999999999999999999999877 9999999973 56
Q ss_pred HHHHHhhcCCC--Ccccc--CCchh-HHHHHHHc-------C-----cccCCeEEEECCCCCccccch
Q 011791 153 ESFKRDLGSMP--WLALP--FKDKS-REKLARYF-------E-----LSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 153 ~~~~~~~~~~~--~~~~~--~~~~~-~~~l~~~~-------~-----v~~~P~~~lid~~G~i~~~~~ 203 (477)
+..+++++++. |..+. +.... ...+.+.+ + +..+|+++|||++|+++.+..
T Consensus 100 ~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~ 167 (183)
T 2obi_A 100 EEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYG 167 (183)
T ss_dssp HHHHHHHHTTTCCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEEC
T ss_pred HHHHHHHHHcCCCceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeC
Confidence 77888877653 33332 11111 11222222 4 455799999999999988753
|
| >3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-17 Score=146.57 Aligned_cols=118 Identities=15% Similarity=0.213 Sum_probs=85.0
Q ss_pred cCcCCCce-ecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC-------CCHHH
Q 011791 83 TSHSRDFV-ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------DEEES 154 (477)
Q Consensus 83 g~~~p~fl-~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D-------~~~~~ 154 (477)
++.+|+|. .+.+|+++++++++||+++|+|||+||++|+ ++|.|++++++|++++ ++||+|++| ++.+.
T Consensus 9 ~~~~~~f~l~d~~G~~~~l~~~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~--v~vv~vs~d~~~~~~~d~~~~ 85 (171)
T 3cmi_A 9 MSEFYKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEG--FTIIGFPCNQFGHQEPGSDEE 85 (171)
T ss_dssp -CGGGGCCCBBTTSCBCCGGGGTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGT--EEEEEEEECSCC---------
T ss_pred hhheeeeEEEcCCCCEecHHHcCCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCC--eEEEEEECcccCCCCCCCHHH
Confidence 56788885 4999999999999999999999999999999 9999999999999877 999999986 34556
Q ss_pred HHHhh-cC--CCCccccCCc--hh-H----HHH-HHHcCcccCC------eEEEECCCCCccccch
Q 011791 155 FKRDL-GS--MPWLALPFKD--KS-R----EKL-ARYFELSTLP------TLVIIGPDGKTLHSNV 203 (477)
Q Consensus 155 ~~~~~-~~--~~~~~~~~~~--~~-~----~~l-~~~~~v~~~P------~~~lid~~G~i~~~~~ 203 (477)
.++++ ++ ++|..+...+ .. . ..+ .+.|++.++| +++|||++|+++.+..
T Consensus 86 ~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~ 151 (171)
T 3cmi_A 86 IAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYS 151 (171)
T ss_dssp ---------CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEEC
T ss_pred HHHHHHhccCCCceEEeeccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeC
Confidence 67777 53 3444443211 11 1 111 2358999999 9999999999988753
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-17 Score=143.47 Aligned_cols=117 Identities=19% Similarity=0.225 Sum_probs=100.3
Q ss_pred hccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEc--CCCHHHHHH
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL--DDEEESFKR 157 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~--D~~~~~~~~ 157 (477)
.+|.++|+|.+ +.+|+.+++++++ |+++|+||++||++|+.++|.|.++++++ + +.+++|++ +++.+.+++
T Consensus 6 ~~g~~~p~f~l~~~~g~~~~l~~~~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~---~--v~~v~v~~d~~~~~~~~~~ 79 (154)
T 3ia1_A 6 KPGEPLPDFLLLDPKGQPVTPATVS-KPAVIVFWASWCTVCKAEFPGLHRVAEET---G--VPFYVISREPRDTREVVLE 79 (154)
T ss_dssp CSBEECCCCCEECTTSCEECTTTSC-SSEEEEEECTTCHHHHHHHHHHHHHHHHH---C--CCEEEEECCTTCCHHHHHH
T ss_pred CCCCcCCceEEECCCCCEechHHcC-CeEEEEEEcccChhHHHHHHHHHHHHHHc---C--CeEEEEeCCCcccHHHHHH
Confidence 35889999954 8999999999999 99999999999999999999999999999 3 88999999 577888999
Q ss_pred hhcCCC--CccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 158 DLGSMP--WLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 158 ~~~~~~--~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
+++... |..+....+....+.+.|++.++|+++|+|++|+++....
T Consensus 80 ~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 127 (154)
T 3ia1_A 80 YMKTYPRFIPLLASDRDRPHEVAARFKVLGQPWTFVVDREGKVVALFA 127 (154)
T ss_dssp HHTTCTTEEECBCCSSCCHHHHHTTSSBCSSCEEEEECTTSEEEEEEE
T ss_pred HHHHcCCCcccccccccchHHHHHHhCCCcccEEEEECCCCCEEEEEc
Confidence 998765 3333332236678999999999999999999999987653
|
| >1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-17 Score=151.25 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=99.1
Q ss_pred hccCcCCCcee-cC--CC--CeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHH
Q 011791 81 VLTSHSRDFVI-SS--DG--RKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEES 154 (477)
Q Consensus 81 ~~g~~~p~fl~-~~--~g--~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~ 154 (477)
.+|.++|+|.+ +. +| +.+++++++||+++|+|| ++||++|+.++|.|.+++++|++++ ++||+|++|. .+.
T Consensus 7 ~~G~~aP~f~l~~~~~~g~~~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~--v~vi~Is~D~-~~~ 83 (202)
T 1uul_A 7 EDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIG--CEVLACSMDS-EYS 83 (202)
T ss_dssp CTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTT--EEEEEEESSC-HHH
T ss_pred cCCCcCCCcEeeeeecCCCccEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCC-HHH
Confidence 46899999955 54 67 899999999999999999 9999999999999999999999877 9999999985 445
Q ss_pred HHHhhcCC----C--CccccCCchhHHHHHHHcCcc------cCCeEEEECCCCCccccch
Q 011791 155 FKRDLGSM----P--WLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 155 ~~~~~~~~----~--~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~ 203 (477)
..++++.+ . .+.+|...+....+++.|++. .+|+++|||++|++++...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~~~ 144 (202)
T 1uul_A 84 HLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITV 144 (202)
T ss_dssp HHHHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEE
T ss_pred HHHHHHHHHhhCCCCCCceeEEECCchHHHHHcCCccCCCCceeeEEEEECCCCEEEEEEe
Confidence 56666543 1 233444444456789999998 9999999999999998754
|
| >1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-17 Score=146.54 Aligned_cols=118 Identities=18% Similarity=0.152 Sum_probs=93.8
Q ss_pred hccCcCCCcee-cCCCCeEecCCCCCCEEEEEEec-CCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHh
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSM-SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 158 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~ 158 (477)
.+|.++|+|.+ +.+|+++++++++||+++|+||+ +||++|+.++|.|++++++| .+ ++||+||.|+ .+..+++
T Consensus 17 ~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~~--v~vv~is~d~-~~~~~~~ 91 (163)
T 1psq_A 17 QVGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--DN--TVVLTVSMDL-PFAQKRW 91 (163)
T ss_dssp CTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TT--EEEEEEESSC-HHHHHHH
T ss_pred CCCCCCCCEEEEcCCCcEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc--CC--cEEEEEECCC-HHHHHHH
Confidence 35889999954 89999999999999999999995 99999999999999999998 44 9999999985 4455555
Q ss_pred hcCCCCccccCCch-hHHHHHHHcCcc----c--CCeEEEECCCCCccccch
Q 011791 159 LGSMPWLALPFKDK-SREKLARYFELS----T--LPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 159 ~~~~~~~~~~~~~~-~~~~l~~~~~v~----~--~P~~~lid~~G~i~~~~~ 203 (477)
.+++..-.++...+ ....+.+.||+. + .|+++|||++|++++...
T Consensus 92 ~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~ 143 (163)
T 1psq_A 92 CGAEGLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEY 143 (163)
T ss_dssp HHHHTCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEE
T ss_pred HHhcCCCCcEEecCCchhHHHHHhCCccccCCceEEEEEEEcCCCeEEEEEe
Confidence 55332102233233 345688999987 3 499999999999998764
|
| >1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.70 E-value=4.4e-17 Score=151.58 Aligned_cols=120 Identities=21% Similarity=0.291 Sum_probs=99.4
Q ss_pred hccCcCCCcee----cCCCCeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHH
Q 011791 81 VLTSHSRDFVI----SSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESF 155 (477)
Q Consensus 81 ~~g~~~p~fl~----~~~g~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~ 155 (477)
.+|.++|+|.+ +.+|+.+++++++||+++|+|| ++||++|+.++|.|.+++++|++++ ++||+|++|. .+..
T Consensus 28 ~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~--v~vv~Is~D~-~~~~ 104 (220)
T 1zye_A 28 AVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVN--CEVVAVSVDS-HFSH 104 (220)
T ss_dssp CTTSBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTT--EEEEEEESSC-HHHH
T ss_pred cCCCCCCCcEEEeeeCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCC-HHHH
Confidence 46899999954 4678999999999999999999 9999999999999999999999877 9999999995 4455
Q ss_pred HHhhcCC----C--CccccCCchhHHHHHHHcCcc------cCCeEEEECCCCCccccch
Q 011791 156 KRDLGSM----P--WLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 156 ~~~~~~~----~--~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~ 203 (477)
.++++.+ . -+.+|+..+....+++.|++. .+|+++|||++|+++....
T Consensus 105 ~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~ygv~~~~~g~~~P~~~liD~~G~I~~~~~ 164 (220)
T 1zye_A 105 LAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSV 164 (220)
T ss_dssp HHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEE
T ss_pred HHHHHHHHHhCCCcCCceEEEECCcHHHHHHhCCeecCCCcccceEEEECCCCEEEEEEe
Confidence 5555543 1 234444444456789999998 9999999999999998764
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-17 Score=144.02 Aligned_cols=117 Identities=16% Similarity=0.189 Sum_probs=99.1
Q ss_pred ccCcCCCcee---cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC-----CHH
Q 011791 82 LTSHSRDFVI---SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-----EEE 153 (477)
Q Consensus 82 ~g~~~p~fl~---~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~-----~~~ 153 (477)
+|.++|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.+++++++++ +.+++|++|. +.+
T Consensus 3 ~g~~~P~f~~~~~~~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~v~~~~~~~~~~~~ 79 (148)
T 2b5x_A 3 LRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ---LNVVAVHMPRSEDDLDPG 79 (148)
T ss_dssp TTCBCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEECCCSTTTSSHH
T ss_pred CCCCCCCCccccccccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCC---cEEEEEEcCCCccccCHH
Confidence 5888999953 7899999999999999999999999999999999999999999765 8999999876 677
Q ss_pred HHHHhhcCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccc
Q 011791 154 SFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 202 (477)
.+.+++++... .++...+....+.+.|++.++|+++++|++|+++.+.
T Consensus 80 ~~~~~~~~~~~-~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 127 (148)
T 2b5x_A 80 KIKETAAEHDI-TQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQ 127 (148)
T ss_dssp HHHHHHHHTTC-CSCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEE
T ss_pred HHHHHHHHcCC-CcceEECCchhHHHHhCCCCCCEEEEECCCCcEEEEe
Confidence 78888886542 3333334445688999999999999999999998765
|
| >3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-17 Score=154.18 Aligned_cols=120 Identities=13% Similarity=0.170 Sum_probs=97.5
Q ss_pred hccCcCCCcee----cCCCCeEecCCCCCCEEEEEEec-CCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHH
Q 011791 81 VLTSHSRDFVI----SSDGRKISVSDLEGKTIGLYFSM-SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESF 155 (477)
Q Consensus 81 ~~g~~~p~fl~----~~~g~~v~ls~l~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~ 155 (477)
.+|.++|+|.+ +.+|+++++++++||+++|+||+ +||++|+.++|.|.+++++|+++| ++||+||+|.. +..
T Consensus 49 ~vG~~aPdF~l~~~~d~~G~~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~g--v~vv~Is~D~~-~~~ 125 (240)
T 3qpm_A 49 KISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAIN--TEVVACSVDSQ-FTH 125 (240)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTT--EEEEEEESSCH-HHH
T ss_pred CCCCCCCCcEeeeeeCCCCcEEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEECCCH-HHH
Confidence 47999999953 55678999999999999999999 999999999999999999999887 99999999863 344
Q ss_pred HHhhcCC------CCccccCCchhHHHHHHHcCcc------cCCeEEEECCCCCccccch
Q 011791 156 KRDLGSM------PWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 156 ~~~~~~~------~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~ 203 (477)
.++++.+ .-+.+|...+....+++.||+. .+|+++|||++|+|++...
T Consensus 126 ~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~~~~g~~~p~~flID~~G~I~~~~~ 185 (240)
T 3qpm_A 126 LAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQITM 185 (240)
T ss_dssp HHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEE
T ss_pred HHHHHHHHhhcCCCCCceeEEeCchHHHHHHhCCccccCCCccceEEEEcCCCeEEEEEe
Confidence 4444432 1233444444456789999997 6899999999999988753
|
| >2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=9.3e-17 Score=145.18 Aligned_cols=121 Identities=12% Similarity=0.127 Sum_probs=92.6
Q ss_pred hccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC-------CH
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EE 152 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~-------~~ 152 (477)
-+|.++|+|.+ +.+|+++++++++||+++|+||++||++|+.++|.|++++++|+++| ++||+|++|. +.
T Consensus 24 ~~g~~~p~f~l~~~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~--v~vv~is~d~~~~~~~~~~ 101 (185)
T 2gs3_A 24 RCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECG--LRILAFPCNQFGKQEPGSN 101 (185)
T ss_dssp GGCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCTTTTCCCSCH
T ss_pred cCCCCcCCceeEcCCCCEeeHHHcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCC--eEEEEEECcccCCCCCCCH
Confidence 36889999954 99999999999999999999999999999999999999999999887 9999999873 45
Q ss_pred HHHHHhhcCC--CCcccc--CCch-hHHHHHHHc-------C-----cccCCeEEEECCCCCccccch
Q 011791 153 ESFKRDLGSM--PWLALP--FKDK-SREKLARYF-------E-----LSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 153 ~~~~~~~~~~--~~~~~~--~~~~-~~~~l~~~~-------~-----v~~~P~~~lid~~G~i~~~~~ 203 (477)
+..++++++. +|..+. +... ....+.+.+ | +..+|+++|||++|+++.+..
T Consensus 102 ~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~ 169 (185)
T 2gs3_A 102 EEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYG 169 (185)
T ss_dssp HHHHHHHHHTTCCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEEC
T ss_pred HHHHHHHHHcCCCCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeC
Confidence 6677777644 333332 1111 111122222 4 344799999999999988753
|
| >2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-17 Score=147.80 Aligned_cols=117 Identities=17% Similarity=0.159 Sum_probs=96.9
Q ss_pred ccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCC-CccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhh
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSS-YKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 159 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~w-C~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~ 159 (477)
+|.++|+|.+ +.+|+++++++++||+++|+||++| |++|+.++|.|++++++| .+ +++|+|+.|+ .+..+++.
T Consensus 20 ~G~~~p~f~l~~~~G~~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~--~~--~~vv~is~d~-~~~~~~~~ 94 (167)
T 2jsy_A 20 VGDQAPDFTVLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL--GD--VNVYTISADL-PFAQARWC 94 (167)
T ss_dssp TTSCCCCCEEEBTTCCEEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH--SS--CEEEEEECSS-GGGTSCCG
T ss_pred CCCcCCceEEECCCCCEeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc--CC--CEEEEEECCC-HHHHHHHH
Confidence 5889999954 9999999999999999999999999 999999999999999999 34 9999999984 44556666
Q ss_pred cCCCCccccCCch-hHHHHHHHcCccc------CCeEEEECCCCCccccch
Q 011791 160 GSMPWLALPFKDK-SREKLARYFELST------LPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 160 ~~~~~~~~~~~~~-~~~~l~~~~~v~~------~P~~~lid~~G~i~~~~~ 203 (477)
+.+.+..+|...+ ....+.+.|++.. .|+++|||++|+++....
T Consensus 95 ~~~~~~~~~~~~d~~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~~~ 145 (167)
T 2jsy_A 95 GANGIDKVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVVYAEY 145 (167)
T ss_dssp GGSSCTTEEEEEGGGTCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEEEE
T ss_pred HhcCCCCceEeeCCchhHHHHHhCCccccCCceeeEEEEEcCCCcEEEEEe
Confidence 6554324444444 4567889999977 499999999999998764
|
| >1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.5e-17 Score=145.71 Aligned_cols=119 Identities=19% Similarity=0.227 Sum_probs=99.3
Q ss_pred hccCcCCCcee---cCCC--CeEecCC-CCCCEEEEEEe-cCCCccch-hhHHHHHHHHHHHhcCCCcEE-EEEEEcCCC
Q 011791 81 VLTSHSRDFVI---SSDG--RKISVSD-LEGKTIGLYFS-MSSYKASA-EFTPRLVEVYEKLKGKGESFE-IVLISLDDE 151 (477)
Q Consensus 81 ~~g~~~p~fl~---~~~g--~~v~ls~-l~gk~vll~F~-a~wC~~C~-~~~p~l~~l~~~~~~~g~~~~-vv~is~D~~ 151 (477)
.+|.++|+|.+ +.+| +++++++ ++||+++|+|| ++||++|+ .++|.|++++++++++| ++ ||+||.| +
T Consensus 5 ~~G~~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~--v~~vv~Is~d-~ 81 (162)
T 1tp9_A 5 AVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKG--VTEILCISVN-D 81 (162)
T ss_dssp CTTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTT--CCCEEEEESS-C
T ss_pred CCCCCCCCeEEEeecCCCCceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEECC-C
Confidence 36889999954 7899 9999999 89999999999 89999999 99999999999999877 99 9999998 4
Q ss_pred HHHHHHhhcCCCCc-cccCCchhHHHHHHHcCcc-----------cCCeEEEECCCCCccccch
Q 011791 152 EESFKRDLGSMPWL-ALPFKDKSREKLARYFELS-----------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 152 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~i~~~~~ 203 (477)
.+..+++.+++..- .+|...+....+++.||+. .+|+++||| +|++++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G~i~~~~~ 144 (162)
T 1tp9_A 82 PFVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAANI 144 (162)
T ss_dssp HHHHHHHHHTCTTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEEE
T ss_pred HHHHHHHHHhcCCCCCeEEEECCCchHHHHcCcccccccCCCCccceeEEEEEE-CCEEEEEEe
Confidence 56667777765431 3455545557789999986 389999999 999998764
|
| >2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-17 Score=146.86 Aligned_cols=118 Identities=17% Similarity=0.173 Sum_probs=97.1
Q ss_pred ccCcCCCc-ee-cCCCCeEecCCC-CCCEEEEEEe-cCCCccchh-hHHHHHHHHHHHhcCCCcE-EEEEEEcCCCHHHH
Q 011791 82 LTSHSRDF-VI-SSDGRKISVSDL-EGKTIGLYFS-MSSYKASAE-FTPRLVEVYEKLKGKGESF-EIVLISLDDEEESF 155 (477)
Q Consensus 82 ~g~~~p~f-l~-~~~g~~v~ls~l-~gk~vll~F~-a~wC~~C~~-~~p~l~~l~~~~~~~g~~~-~vv~is~D~~~~~~ 155 (477)
+|.++|+| +. +.+|+.++++++ +||+++|+|| ++||++|+. ++|.|++++++++++| + +||+||.|+ .+..
T Consensus 5 ~G~~aP~f~l~~~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~g--v~~vv~Is~d~-~~~~ 81 (167)
T 2wfc_A 5 EGDKLPAVTVFGATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKG--VDIIACMAVND-SFVM 81 (167)
T ss_dssp TTCBCCCCEEESSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTT--CCEEEEEESSC-HHHH
T ss_pred CCCcCCCcEeecCCCCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEeCCC-HHHH
Confidence 68899999 45 889999999998 9999888875 999999999 9999999999999887 9 999999984 5566
Q ss_pred HHhhcCCCCc-cccCCchhHHHHHHHcCcccC-----------CeEEEECCCCCccccch
Q 011791 156 KRDLGSMPWL-ALPFKDKSREKLARYFELSTL-----------PTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 156 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~v~~~-----------P~~~lid~~G~i~~~~~ 203 (477)
+++.++.... .+|+..+....+++.||+... |+++|| ++|+|++..+
T Consensus 82 ~~~~~~~~~~~~fp~l~D~~~~~~~~~gv~~~~~~~~g~~~~~p~t~lI-~~G~I~~~~~ 140 (167)
T 2wfc_A 82 DAWGKAHGADDKVQMLADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVI-EDGVVTKVNV 140 (167)
T ss_dssp HHHHHHTTCTTTSEEEECTTSHHHHHTTCEECCHHHHSSCEECCEEEEE-ETTEEEEEEE
T ss_pred HHHHHhcCCCcceEEEECCCCcHHHHcCCccccccccCcccceEEEEEE-eCCEEEEEEe
Confidence 6666654421 245544555678999998653 999999 9999998764
|
| >2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.7e-17 Score=147.24 Aligned_cols=120 Identities=17% Similarity=0.205 Sum_probs=94.2
Q ss_pred ccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC-------CHH
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EEE 153 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~-------~~~ 153 (477)
.+.++|+|.+ +.+|+.+++++++||+|+|+||++||++|+.++|.|++++++|++++ ++||+|++|. +.+
T Consensus 24 ~~~~~p~f~l~~~~G~~~~l~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~--v~vv~vs~d~~~~~~~~~~~ 101 (190)
T 2vup_A 24 AASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQG--FTVLAFPCNQFGGQEPGNEE 101 (190)
T ss_dssp CCCSGGGSCCBBTTSSBCCGGGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--CEEEEEECCCSTTCCCSCHH
T ss_pred CCCcccCeEEEcCCCCEEEHHHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCC--eEEEEEEcCccCCCCCCCHH
Confidence 3678999954 89999999999999999999999999999999999999999999877 9999999984 567
Q ss_pred HHHHhh-cC--CCCcccc--CCch-hHHHHH-----HHcCcccCC------eEEEECCCCCccccch
Q 011791 154 SFKRDL-GS--MPWLALP--FKDK-SREKLA-----RYFELSTLP------TLVIIGPDGKTLHSNV 203 (477)
Q Consensus 154 ~~~~~~-~~--~~~~~~~--~~~~-~~~~l~-----~~~~v~~~P------~~~lid~~G~i~~~~~ 203 (477)
..++++ +. .+|..+. +... ....+. +.|++.++| +++|||++|+++.+..
T Consensus 102 ~~~~~~~~~~~~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~ 168 (190)
T 2vup_A 102 EIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFS 168 (190)
T ss_dssp HHHHHHHHHHCCCSCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEEC
T ss_pred HHHHHHHHhcCCCeEEEeecccCcccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEEC
Confidence 777777 43 3443332 1111 111122 346889999 9999999999988753
|
| >3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-17 Score=146.92 Aligned_cols=116 Identities=14% Similarity=0.107 Sum_probs=93.6
Q ss_pred ccCcCCCcee-cCCCCeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhh
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 159 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~ 159 (477)
+|.++|+|.+ +.+|+.+++++++||+++|+|| ++||++|+.++|.|++++++ .+ ++||+||.|. .+..+++.
T Consensus 22 ~G~~aP~f~l~~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~---~~--~~vv~is~d~-~~~~~~~~ 95 (166)
T 3p7x_A 22 EGDFAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK---EE--GIVLTISADL-PFAQKRWC 95 (166)
T ss_dssp TTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT---TT--SEEEEEESSC-HHHHHHHH
T ss_pred CCCCCCCeEEEcCCCCEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc---CC--CEEEEEECCC-HHHHHHHH
Confidence 5889999955 9999999999999999999999 78999999999999999887 44 8999999984 55666666
Q ss_pred cCCCCccccCCchh-HHHHHHHcCccc------CCeEEEECCCCCccccch
Q 011791 160 GSMPWLALPFKDKS-REKLARYFELST------LPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 160 ~~~~~~~~~~~~~~-~~~l~~~~~v~~------~P~~~lid~~G~i~~~~~ 203 (477)
+++..-.++...+. ...+.+.||+.. +|+++|||++|+|++...
T Consensus 96 ~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~ 146 (166)
T 3p7x_A 96 ASAGLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEI 146 (166)
T ss_dssp HHHTCSSCEEEECTTTCHHHHHHTCEETTTTEECCEEEEECTTCBEEEEEE
T ss_pred HHcCCCceEEccCCchhHHHHHhCCccccCCceeeEEEEECCCCeEEEEEE
Confidence 64332123333333 457889999975 899999999999998754
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-17 Score=162.95 Aligned_cols=120 Identities=14% Similarity=0.231 Sum_probs=102.1
Q ss_pred hccCcCCCce-----e-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC-----
Q 011791 81 VLTSHSRDFV-----I-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD----- 149 (477)
Q Consensus 81 ~~g~~~p~fl-----~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D----- 149 (477)
.+|.++|+|. + +.+|+.+++++++||+|+|+||++||++|+.++|.|.+++++|++++ ++||+|++|
T Consensus 52 ~vG~~aPdF~~~~~wL~d~dG~~vsLsdl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~--v~vi~Vs~d~~~~~ 129 (352)
T 2hyx_A 52 ESCGTAPDLKGITGWLNTPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSG--LAVIGVHTPEYAFE 129 (352)
T ss_dssp CCCCBCCCCCSCCEEESSGGGCCCCGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEECCSSGGG
T ss_pred CCCCcCCCccccccccCCCCCCEEcHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCC--eEEEEEECCccccc
Confidence 4688899997 5 78999999999999999999999999999999999999999999876 999999986
Q ss_pred CCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 150 DEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
++.+.++++++++. +.++...+....+.+.|++..+|+++|||++|+++....
T Consensus 130 d~~~~~~~~~~~~~-l~fpv~~D~~~~l~~~ygV~~~Pt~~lID~~G~Iv~~~~ 182 (352)
T 2hyx_A 130 KVPGNVAKGAANLG-ISYPIALDNNYATWTNYRNRYWPAEYLIDATGTVRHIKF 182 (352)
T ss_dssp GCHHHHHHHHHHHT-CCSCEEECTTSHHHHHTTCCEESEEEEECTTSBEEEEEE
T ss_pred CCHHHHHHHHHHcC-CCccEEeCCcHHHHHHcCCCccCEEEEEeCCCeEEEEEc
Confidence 46778888887554 223343444467889999999999999999999988753
|
| >2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.2e-17 Score=145.04 Aligned_cols=122 Identities=20% Similarity=0.352 Sum_probs=98.7
Q ss_pred hhccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCcc-chhhHHHHHHHHHHHhcCC-CcEEEEEEEcCC---CHH
Q 011791 80 SVLTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKA-SAEFTPRLVEVYEKLKGKG-ESFEIVLISLDD---EEE 153 (477)
Q Consensus 80 ~~~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~-C~~~~p~l~~l~~~~~~~g-~~~~vv~is~D~---~~~ 153 (477)
.+.|.++|+|.+ +.+| .+++++++||+++|+||++||++ |+.++|.|.+++++++++| .+++||+|++|. +.+
T Consensus 10 ~~~G~~~p~f~l~~~~g-~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~ 88 (172)
T 2k6v_A 10 RLLNPKPVDFALEGPQG-PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPE 88 (172)
T ss_dssp EEEEEEECCCEEECSSS-EEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHH
T ss_pred cccCCCCCCeEEEcCCC-CCcHHHhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHH
Confidence 356888999954 8999 99999999999999999999998 9999999999999998652 239999999984 356
Q ss_pred HHHHhhcC--CCCccccCCchhHHHHHHHcCc---------------ccCCeEEEECCCCCccccch
Q 011791 154 SFKRDLGS--MPWLALPFKDKSREKLARYFEL---------------STLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 154 ~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~v---------------~~~P~~~lid~~G~i~~~~~ 203 (477)
.+++++++ .+|..+.........+++.|++ .++|+++|+| +|+++....
T Consensus 89 ~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~~ 154 (172)
T 2k6v_A 89 VADRYAKAFHPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLYS 154 (172)
T ss_dssp HHHHHHHHHCTTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEEC
T ss_pred HHHHHHHHhCCCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEEC
Confidence 67777764 4566665554444677777764 6789999999 999988764
|
| >2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.1e-16 Score=143.38 Aligned_cols=77 Identities=16% Similarity=0.096 Sum_probs=65.4
Q ss_pred hccCcCCCcee-cCC-CCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC-------C
Q 011791 81 VLTSHSRDFVI-SSD-GRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------E 151 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~-g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~-------~ 151 (477)
.....+|+|.+ +.+ |+.+++++++||+|+|+|||+||++| .++|.|+++|++|+++| ++||+|++|. +
T Consensus 12 ~~~~~~pdF~l~d~~~G~~v~Ls~~kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g--~~vlgvs~d~f~~~e~~~ 88 (207)
T 2r37_A 12 GISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPFG--LVILGFPCNQFGKQEPGE 88 (207)
T ss_dssp ---CCGGGCEEEBTTSSCEEEGGGGTTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGT--EEEEEEECCCBTTCCCSC
T ss_pred cccCccCCeEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCC--EEEEEEECcccCcCCCCC
Confidence 34567899954 899 99999999999999999999999999 79999999999999888 9999999762 3
Q ss_pred HHHHHHhhc
Q 011791 152 EESFKRDLG 160 (477)
Q Consensus 152 ~~~~~~~~~ 160 (477)
.+..+++++
T Consensus 89 ~~~i~~f~~ 97 (207)
T 2r37_A 89 NSEILPTLK 97 (207)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 456677776
|
| >2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-16 Score=146.73 Aligned_cols=77 Identities=17% Similarity=0.167 Sum_probs=67.2
Q ss_pred hccCcCCCcee-cCC-CCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC-------C
Q 011791 81 VLTSHSRDFVI-SSD-GRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------E 151 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~-g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~-------~ 151 (477)
.....+|+|.+ +.+ |+.+++++++||+|+|+|||+||++|+ ++|.|+++|++|+++| ++||+|++|. +
T Consensus 30 ~~~~~~pdF~l~d~~~G~~v~Lsd~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g--~~Vlgvs~d~f~~~e~~~ 106 (215)
T 2i3y_A 30 DEKGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTA-QYPELNALQEELKPYG--LVVLGFPCNQFGKQEPGD 106 (215)
T ss_dssp CCCCCGGGCEEEBSSSSCEEEGGGGTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGT--EEEEEEECCCSTTCCCSC
T ss_pred cccCCcCCcEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCC--eEEEEEEccccCcCCCCC
Confidence 34567899954 899 999999999999999999999999999 9999999999999888 9999999762 3
Q ss_pred HHHHHHhhc
Q 011791 152 EESFKRDLG 160 (477)
Q Consensus 152 ~~~~~~~~~ 160 (477)
.+..+++++
T Consensus 107 ~~~i~~f~~ 115 (215)
T 2i3y_A 107 NKEILPGLK 115 (215)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 456677776
|
| >1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A | Back alignment and structure |
|---|
Probab=99.68 E-value=5.3e-17 Score=145.47 Aligned_cols=117 Identities=20% Similarity=0.192 Sum_probs=92.7
Q ss_pred hccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCC-CccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHh
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSS-YKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 158 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~w-C~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~ 158 (477)
.+|.++|+|.+ +.+|+.+++++++||+++|+||++| |++|+.++|.|.+++++ .+ ++||+|++|. .+..+++
T Consensus 19 ~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~---~~--v~vv~Is~D~-~~~~~~~ 92 (175)
T 1xvq_A 19 AVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA---SG--ATVLCVSKDL-PFAQKRF 92 (175)
T ss_dssp CTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH---TT--CEEEEEESSC-HHHHTTC
T ss_pred CcCCcCCCeEEECCCCCEEeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh---cC--CEEEEEECCC-HHHHHHH
Confidence 35889999954 8999999999999999999999999 99999999999999998 34 9999999985 4455666
Q ss_pred hcCCCCccccCCchhHHHHHHHcCcccC---------CeEEEECCCCCccccch
Q 011791 159 LGSMPWLALPFKDKSREKLARYFELSTL---------PTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~---------P~~~lid~~G~i~~~~~ 203 (477)
++...+..++...+....+.+.|++... |+++|||++|+++....
T Consensus 93 ~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~~ 146 (175)
T 1xvq_A 93 CGAEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTEL 146 (175)
T ss_dssp C------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEE
T ss_pred HHHcCCCCceEeeCCHHHHHHHhCCcccccccCCcccceEEEECCCCeEEEEEE
Confidence 6654432344443434668899999877 99999999999998764
|
| >1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-16 Score=147.00 Aligned_cols=116 Identities=16% Similarity=0.215 Sum_probs=96.8
Q ss_pred hccCCCccee-cc--CCCceecccCCCC-E-EEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHH
Q 011791 242 LVSGDLDFVV-GK--NGGKVPVSDLAGK-T-ILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFD 316 (477)
Q Consensus 242 ~~~~~p~f~l-~~--~g~~~~l~~~~gk-~-vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~ 316 (477)
++...|+|.+ +. +| ++++++++|| + ||++||++||++|..+++.|++++++|+++ +++||+|++|. ....+
T Consensus 5 iG~~aP~F~l~~~~~~G-~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~--~v~vi~vS~D~-~~~~~ 80 (220)
T 1xcc_A 5 LGATFPNFTAKASGIDG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKL--NCKLIGFSCNS-KESHD 80 (220)
T ss_dssp TTCBCCCCEECBTTCSS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTT--TEEEEEEESSC-HHHHH
T ss_pred CCCCCCCcEeecccCCC-cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCC-HHHHH
Confidence 4556799999 78 88 9999999998 4 555568999999999999999999999876 79999999995 34445
Q ss_pred HHHh-------cCCCceeccCcchhHHHHHhcCCC------------CcceEEEECCCCcEEEec
Q 011791 317 EFFK-------GMPWLALPFGDARKASLSRKFKVS------------GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 317 ~~~~-------~~~~~~~p~~~d~~~~l~~~~~v~------------~~Pt~~lid~~G~iv~~~ 362 (477)
+|.+ +. .++||+..|.+..+++.||+. .+|+++|||++|+|+...
T Consensus 81 ~~~~~i~~~~~~~-~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~~ 144 (220)
T 1xcc_A 81 KWIEDIKYYGKLN-KWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATV 144 (220)
T ss_dssp HHHHHHHHHHTCS-CCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEE
T ss_pred HHHHHHHHHhcCC-CCcceeEECchhHHHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEEE
Confidence 5554 33 368899889888999999983 479999999999999884
|
| >2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A | Back alignment and structure |
|---|
Probab=99.68 E-value=5.6e-17 Score=143.92 Aligned_cols=115 Identities=14% Similarity=0.125 Sum_probs=95.8
Q ss_pred hhccCcCCCcee-cC--CCCeEecCCC-CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHH
Q 011791 80 SVLTSHSRDFVI-SS--DGRKISVSDL-EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESF 155 (477)
Q Consensus 80 ~~~g~~~p~fl~-~~--~g~~v~ls~l-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~ 155 (477)
..+|.++|+|.+ +. +|+.++++++ +||+++|+||++||++|+.++|.|.+++++ + +.+++|++|++.+.+
T Consensus 22 ~~~G~~~P~f~l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----~--v~vv~v~~~~~~~~~ 95 (168)
T 2b1k_A 22 ALIGKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----G--IRVVGMNYKDDRQKA 95 (168)
T ss_dssp TTTTSBCCCCEEEESSSTTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT----T--CCEEEEEESCCHHHH
T ss_pred cccCCcCCCeEeecccCCCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC----C--CEEEEEECCCChHHH
Confidence 357999999954 77 8999999885 899999999999999999999999998875 4 899999999998888
Q ss_pred HHhhcCCC--CccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccc
Q 011791 156 KRDLGSMP--WLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 156 ~~~~~~~~--~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 202 (477)
.++++.+. |..+ ..+....+++.|++.++|+++++|++|+++...
T Consensus 96 ~~~~~~~~~~~~~~--~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 142 (168)
T 2b1k_A 96 ISWLKELGNPYALS--LFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRH 142 (168)
T ss_dssp HHHHHHHCCCCSEE--EEETTCHHHHHHTCCSSSEEEEECTTSBEEEEE
T ss_pred HHHHHHcCCCCcee--eECcchHHHHHcCccccCEEEEECCCCeEEEEE
Confidence 88887543 3211 123345688999999999999999999998764
|
| >2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.9e-17 Score=144.49 Aligned_cols=116 Identities=13% Similarity=0.150 Sum_probs=93.2
Q ss_pred ccCcCCCcee-cCCCCeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhh
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 159 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~ 159 (477)
+|.++|+|.+ +.+|+.+++++++||+++|+|| ++||++|+.++|.|+++++++ .+ ++||+|+.|. .+..+++.
T Consensus 23 ~g~~~P~f~l~~~~G~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~~--v~vv~Is~d~-~~~~~~~~ 97 (171)
T 2yzh_A 23 VGDRAPEAVVVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM--EG--VDVTVVSMDL-PFAQKRFC 97 (171)
T ss_dssp TTSBCCCEEEEETTSCEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TT--EEEEEEESSC-HHHHHHHH
T ss_pred CCCcCCceEEECCCCCEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc--CC--ceEEEEeCCC-HHHHHHHH
Confidence 5888999954 8999999999999999999999 899999999999999999998 44 9999999985 45566666
Q ss_pred cCCCCccccCCch-hHHHHHHHcCcc---------cCCeEEEECCCCCccccch
Q 011791 160 GSMPWLALPFKDK-SREKLARYFELS---------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 160 ~~~~~~~~~~~~~-~~~~l~~~~~v~---------~~P~~~lid~~G~i~~~~~ 203 (477)
+++..-.++...+ ....+ +.||+. .+|+++|||++|+++....
T Consensus 98 ~~~~~~~~~~l~D~~~~~~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~ 150 (171)
T 2yzh_A 98 ESFNIQNVTVASDFRYRDM-EKYGVLIGEGALKGILARAVFIIDKEGKVAYVQL 150 (171)
T ss_dssp HHTTCCSSEEEECTTTCGG-GGGTCBBCSSTTTTSBCCEEEEECTTSBEEEEEE
T ss_pred HHcCCCCeEEeecCccCcH-HHhCCEecccccCCceeeEEEEEcCCCeEEEEEe
Confidence 6543212333333 34457 899985 2699999999999998764
|
| >3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C | Back alignment and structure |
|---|
Probab=99.68 E-value=9.8e-17 Score=152.14 Aligned_cols=121 Identities=13% Similarity=0.190 Sum_probs=98.1
Q ss_pred hhccCcCCCcee----cCCCCeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHH
Q 011791 80 SVLTSHSRDFVI----SSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEES 154 (477)
Q Consensus 80 ~~~g~~~p~fl~----~~~g~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~ 154 (477)
-.+|.++|+|.+ +.+|+++++++++||+++|+|| ++||++|+.++|.|++++++|+++| ++||+||+|.. +.
T Consensus 62 l~vG~~aPdF~l~~l~d~~G~~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~g--v~vv~IS~D~~-~~ 138 (254)
T 3tjj_A 62 AKISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSIN--TEVVACSVDSQ-FT 138 (254)
T ss_dssp CCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTT--EEEEEEESSCH-HH
T ss_pred cCCCCCCCCcEeeeecCCCCcEEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcC--CEEEEEcCCCH-HH
Confidence 347999999952 5678999999999999999999 9999999999999999999999887 99999999853 44
Q ss_pred HHHhhcCC------CCccccCCchhHHHHHHHcCcc------cCCeEEEECCCCCccccch
Q 011791 155 FKRDLGSM------PWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 155 ~~~~~~~~------~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~ 203 (477)
..++++.+ .-+.+|...+....+++.||+. .+|+++|||++|+|+....
T Consensus 139 ~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~~ygv~~~~~g~~~p~tflID~~G~I~~~~~ 199 (254)
T 3tjj_A 139 HLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITL 199 (254)
T ss_dssp HHHHHTSCGGGTSCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEE
T ss_pred HHHHHHHHHHhcCCcccccceeeCcHHHHHHHcCCccccCCCccceEEEECCCCeEEEEEe
Confidence 45555432 1234444444456789999985 5899999999999988754
|
| >2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.67 E-value=4.3e-17 Score=143.54 Aligned_cols=117 Identities=17% Similarity=0.231 Sum_probs=95.2
Q ss_pred hccCcCCCcee-cCCCCeEecCCCCCC--EEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHH
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSDLEGK--TIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 156 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~l~gk--~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~ 156 (477)
.+|.++|+|.+ +.+|+++++++++|| +|+|+|| ++||++|+.++|.|.+++++|+++| +||+|+.| +.+..+
T Consensus 8 ~~G~~~P~f~l~~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~---~vv~is~d-~~~~~~ 83 (159)
T 2a4v_A 8 EIGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA---AVFGLSAD-SVTSQK 83 (159)
T ss_dssp CTTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC---EEEEEESC-CHHHHH
T ss_pred CCCCCCCCeEEECCCCCEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC---cEEEEeCC-CHHHHH
Confidence 46889999955 899999999999887 8999987 9999999999999999999998875 89999999 455666
Q ss_pred HhhcCCCCccccCCchhHHHHHHHcCcccCC------eEEEECCCCCccccch
Q 011791 157 RDLGSMPWLALPFKDKSREKLARYFELSTLP------TLVIIGPDGKTLHSNV 203 (477)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P------~~~lid~~G~i~~~~~ 203 (477)
++.+++. +.++...+....+.+.||+...| +++|| ++|++++...
T Consensus 84 ~~~~~~~-~~~~~l~D~~~~~~~~~gv~~~p~~g~~~~~~li-~~G~i~~~~~ 134 (159)
T 2a4v_A 84 KFQSKQN-LPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIF-VDGKLKFKRV 134 (159)
T ss_dssp HHHHHHT-CSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEE-ETTEEEEEEE
T ss_pred HHHHHhC-CCceEEECCccHHHHHhCCcccccCCccceEEEE-cCCEEEEEEc
Confidence 6666433 12333333445688999999888 88899 9999998763
|
| >3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.7e-16 Score=148.08 Aligned_cols=117 Identities=14% Similarity=0.221 Sum_probs=97.7
Q ss_pred hccCCCccee-ccCCCceec-ccC--CCCE-EEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHH
Q 011791 242 LVSGDLDFVV-GKNGGKVPV-SDL--AGKT-ILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFD 316 (477)
Q Consensus 242 ~~~~~p~f~l-~~~g~~~~l-~~~--~gk~-vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~ 316 (477)
++...|+|.+ +.+| ++++ +++ +||+ ||++||++||++|..+++.|++++++|+++ +++||+||+|.. ....
T Consensus 7 iG~~aPdF~l~~~~G-~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~--gv~VI~VS~Ds~-~~~~ 82 (249)
T 3a2v_A 7 IGERFPEMEVTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRL--GVDLIGLSVDSV-FSHI 82 (249)
T ss_dssp TTSBCCCEEEEETTE-EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHT--TEEEEEEESSCH-HHHH
T ss_pred CCCCCCCeEEEcCCC-CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhC--CcEEEEEECCCH-HHHH
Confidence 4566799999 8888 7999 999 9996 556889999999999999999999999976 799999999853 3333
Q ss_pred HHHhc---C--CCceeccCcchhHHHHHhcCCC-------CcceEEEECCCCcEEEec
Q 011791 317 EFFKG---M--PWLALPFGDARKASLSRKFKVS-------GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 317 ~~~~~---~--~~~~~p~~~d~~~~l~~~~~v~-------~~Pt~~lid~~G~iv~~~ 362 (477)
+|.+. . .-++||+..|.+..+++.||+. ++|+++|||++|+|+...
T Consensus 83 ~w~~~~~~~~~~~i~fPil~D~~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~ 140 (249)
T 3a2v_A 83 KWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTML 140 (249)
T ss_dssp HHHHHHHHHTCCCCCSCEEECTTSHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEE
T ss_pred HHHHHHHHhcCCCCceeEEECCchHHHHHhCCccccCCCcccceEEEECCCCeEEEEE
Confidence 34332 1 1377888889889999999997 899999999999999874
|
| >3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-16 Score=146.74 Aligned_cols=114 Identities=9% Similarity=0.064 Sum_probs=99.5
Q ss_pred hccCCCccee-ccCCCceecccCCCCEEEEEEeCCC-ChhhH-----hHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhH
Q 011791 242 LVSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHW-CPPCR-----AFLPKLIDAYKKIKERNESLEVVFISSDRDQTS 314 (477)
Q Consensus 242 ~~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~w-C~~C~-----~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~ 314 (477)
++...|+|.+ +.+|+++++++++||++||+||++| |++|. .+++.|+++ | .+++||+||+| +...
T Consensus 24 vG~~APdFtL~d~~G~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~----~gv~VvgIS~D-s~~~ 95 (224)
T 3keb_A 24 KGDYLPSFMLVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W----PHLKLIVITVD-SPSS 95 (224)
T ss_dssp TTCBCCCCEEEETTSCEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C----TTSEEEEEESS-CHHH
T ss_pred CCCCCCCeEEECCCCCEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c----CCCEEEEEECC-CHHH
Confidence 3556799999 9999999999999999999999988 99999 888888776 4 26899999998 5678
Q ss_pred HHHHHhcCCCceeccCcch-hHHHHHhcCCCC---------cceEEEECCCCcEEEecc
Q 011791 315 FDEFFKGMPWLALPFGDAR-KASLSRKFKVSG---------IPMLVAIGPSGRTITKEA 363 (477)
Q Consensus 315 ~~~~~~~~~~~~~p~~~d~-~~~l~~~~~v~~---------~Pt~~lid~~G~iv~~~~ 363 (477)
.++|.++++..++|++.|. +..+++.|||.. .|++||||++|+|++...
T Consensus 96 ~~~f~~~~gl~~fplLsD~~~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~~ 154 (224)
T 3keb_A 96 LARARHEHGLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSER 154 (224)
T ss_dssp HHHHHHHHCCTTCEEEESTTCTTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEEEE
T ss_pred HHHHHHHcCCCCceEEEcCCchHHHHHhCCccccccccCCccCEEEEEcCCCEEEEEEe
Confidence 8899998885579999997 689999999964 799999999999998854
|
| >3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A | Back alignment and structure |
|---|
Probab=99.66 E-value=9e-17 Score=143.47 Aligned_cols=122 Identities=17% Similarity=0.141 Sum_probs=97.0
Q ss_pred hhhhccCcCCCce-e-cCCCCeEecCC-CCCCEEEE-EEecCCCccch-hhHHHHHHHHHHHhcCCCcEEEEE-EEcCCC
Q 011791 78 LRSVLTSHSRDFV-I-SSDGRKISVSD-LEGKTIGL-YFSMSSYKASA-EFTPRLVEVYEKLKGKGESFEIVL-ISLDDE 151 (477)
Q Consensus 78 ~~~~~g~~~p~fl-~-~~~g~~v~ls~-l~gk~vll-~F~a~wC~~C~-~~~p~l~~l~~~~~~~g~~~~vv~-is~D~~ 151 (477)
.+..+|.++|+|. . +.+|+.+++++ ++||+|+| +||++||++|+ .++|.|++++++|+++| ++||+ ||.|+
T Consensus 13 ~~~~vG~~aPdf~l~~~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~g--v~vv~~iS~D~- 89 (173)
T 3mng_A 13 APIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKG--VQVVACLSVND- 89 (173)
T ss_dssp CCCCTTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTT--CCEEEEEESSC-
T ss_pred CCCCCCCCCCCeEeeeCCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCC--CEEEEEEcCCC-
Confidence 3456799999994 5 78999999999 59996555 55699999999 59999999999999988 99997 99984
Q ss_pred HHHHHHhhcCCCCc-cccCCchhHHHHHHHcCcc-------------cCCeEEEECCCCCccccch
Q 011791 152 EESFKRDLGSMPWL-ALPFKDKSREKLARYFELS-------------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 152 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~v~-------------~~P~~~lid~~G~i~~~~~ 203 (477)
.+..+++.++.... .+|...+....+++.||+. ..|+++||| +|+|++..+
T Consensus 90 ~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~~v 154 (173)
T 3mng_A 90 AFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIVKALNV 154 (173)
T ss_dssp HHHHHHHHHHTTCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEEEEEEE
T ss_pred HHHHHHHHHHhCCCCceEEEECCChHHHHHhCCCcccccccccCCcceEEEEEEEE-CCEEEEEEE
Confidence 45566666654422 2455555567789999985 359999999 999998875
|
| >3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-16 Score=143.88 Aligned_cols=142 Identities=18% Similarity=0.185 Sum_probs=112.4
Q ss_pred hhhhhccCCCccee----ccCCCceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCCh
Q 011791 238 LESVLVSGDLDFVV----GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 312 (477)
Q Consensus 238 l~~~~~~~~p~f~l----~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~ 312 (477)
+...++...|+|.+ +.++++++|++++||++||+|| +.||+.|..+++.+++.+++|++. +++|++||+| +.
T Consensus 21 M~~~VG~~APdF~l~a~~d~~~~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~--g~~vigiS~D-s~ 97 (216)
T 3sbc_A 21 MVAQVQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQ--GAQVLFASTD-SE 97 (216)
T ss_dssp -CCCTTSBCCCCCEEEEETTEEEEECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHT--TEEEEEEESS-CH
T ss_pred chhhcCCcCCCCCCcceECCCCcEEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccC--CceEEEeecC-ch
Confidence 33456778899986 4556899999999999999999 899999999999999999999987 7999999999 45
Q ss_pred hHHHHHHhcC------CCceeccCcchhHHHHHhcCCC------CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHH
Q 011791 313 TSFDEFFKGM------PWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEE 380 (477)
Q Consensus 313 ~~~~~~~~~~------~~~~~p~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~ 380 (477)
...++|.... .-++||++.|.+..+++.|||- ..+.+||||++|+|+.... +... ..+
T Consensus 98 ~sh~aw~~~~~~~~~~~~l~fpllsD~~~~vak~YGv~~~~~g~~~R~tFiID~~G~Ir~~~v------~~~~----~gr 167 (216)
T 3sbc_A 98 YSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITI------NDLP----VGR 167 (216)
T ss_dssp HHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEE------ECTT----BCC
T ss_pred hhHHHHHHHHHHhCCccCcccceEeCCCCHHHHHcCCeeccCCceeeEEEEECCCCeEEEEEE------cCCC----CCC
Confidence 5666666543 2478999999999999999983 4678999999999987632 2111 234
Q ss_pred HHHHHHHHHHHH
Q 011791 381 RMKEIDGQYNEM 392 (477)
Q Consensus 381 ~~~~l~~~~~~~ 392 (477)
+++++++.++.+
T Consensus 168 n~dEiLr~l~Al 179 (216)
T 3sbc_A 168 NVDEALRLVEAF 179 (216)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHh
Confidence 556666666654
|
| >3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.1e-16 Score=126.28 Aligned_cols=70 Identities=19% Similarity=0.538 Sum_probs=61.1
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+|+|+|+|||+||++|+.+.|.+.++++.++ ++.++.|++|... ++++.|+|
T Consensus 19 ~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~vd~d~~~-----------------------~l~~~~~V 71 (105)
T 3zzx_A 19 GNKLVVIDFYATWCGPCKMIAPKLEELSQSMS----DVVFLKVDVDECE-----------------------DIAQDNQI 71 (105)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT----TEEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCEEEEEEECCCCCCccCCCcchhhhhhccC----CeEEEEEecccCH-----------------------HHHHHcCC
Confidence 47999999999999999999999999988764 4667777776543 68999999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
+++||++++ ++|+++.+
T Consensus 72 ~~~PT~~~~-~~G~~v~~ 88 (105)
T 3zzx_A 72 ACMPTFLFM-KNGQKLDS 88 (105)
T ss_dssp CBSSEEEEE-ETTEEEEE
T ss_pred CeecEEEEE-ECCEEEEE
Confidence 999999999 79999987
|
| >3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-16 Score=143.83 Aligned_cols=119 Identities=11% Similarity=0.178 Sum_probs=95.1
Q ss_pred hccCcCCCcee-cC--CC-CeEecCC-CCCCE-EEEEEecCCCccchh-hHHHHHHHHHHHhcCCCcEE-EEEEEcCCCH
Q 011791 81 VLTSHSRDFVI-SS--DG-RKISVSD-LEGKT-IGLYFSMSSYKASAE-FTPRLVEVYEKLKGKGESFE-IVLISLDDEE 152 (477)
Q Consensus 81 ~~g~~~p~fl~-~~--~g-~~v~ls~-l~gk~-vll~F~a~wC~~C~~-~~p~l~~l~~~~~~~g~~~~-vv~is~D~~~ 152 (477)
.+|.++|+|.+ +. +| +++++++ ++||+ |+++||++||++|+. ++|.|++++++|+++| ++ ||+||.|+ .
T Consensus 27 ~vG~~aPdf~l~~~~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~g--v~~vv~Is~d~-~ 103 (184)
T 3uma_A 27 AVGDKLPNATFKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARG--VDDIAVVAVND-L 103 (184)
T ss_dssp CTTCBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTT--CCEEEEEESSC-H
T ss_pred CCCCCCCCcEeecccCCCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcC--CCEEEEEECCC-H
Confidence 46999999965 65 89 9999999 89995 566678999999999 7999999999999988 88 99999984 4
Q ss_pred HHHHHhhcCCCCc-cccCCchhHHHHHHHcCcc-----------cCCeEEEECCCCCccccch
Q 011791 153 ESFKRDLGSMPWL-ALPFKDKSREKLARYFELS-----------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 153 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~i~~~~~ 203 (477)
+..+++.++.... .+|...+....+++.||+. ..|+++||| +|+|++...
T Consensus 104 ~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~g~g~~~~r~tfiId-dG~I~~~~~ 165 (184)
T 3uma_A 104 HVMGAWATHSGGMGKIHFLSDWNAAFTKAIGMEIDLSAGTLGIRSKRYSMLVE-DGVVKALNI 165 (184)
T ss_dssp HHHHHHHHHHTCTTTSEEEECTTCHHHHHTTCEEEEGGGTCEEEECCEEEEEE-TTEEEEEEE
T ss_pred HHHHHHHHHhCCCCceEEEEcCchHHHHHcCCceeccccCCcccceeEEEEEC-CCEEEEEEE
Confidence 5556666544322 2555555567789999985 358899997 999998775
|
| >1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-16 Score=139.64 Aligned_cols=115 Identities=15% Similarity=0.228 Sum_probs=94.3
Q ss_pred hccCcCCCcee-cCCC--------CeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCC
Q 011791 81 VLTSHSRDFVI-SSDG--------RKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE 151 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g--------~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~ 151 (477)
.+|.++|+|.+ +.+| +.+++++++||+++|+||++||++|+.++|.|.+++++ .++.+++|++|++
T Consensus 9 ~~g~~~p~f~l~~~~g~~~~~~~~~~~~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~-----~~v~~v~v~~~~~ 83 (156)
T 1kng_A 9 LIGRPAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD-----KRFQLVGINYKDA 83 (156)
T ss_dssp ---CBCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC-----TTSEEEEEEESCC
T ss_pred HhCCCCCCceeeeccCcccccccCceechHHhCCCEEEEEEEcccCHhHHHHHHHHHHHHhc-----CCeEEEEEECCCC
Confidence 56899999954 8888 99999999999999999999999999999999988765 2389999999999
Q ss_pred HHHHHHhhcCCC--CccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccc
Q 011791 152 EESFKRDLGSMP--WLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 152 ~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 202 (477)
.+.+.+++..+. |.. ...+....+++.|++.++|+++++|++|+++...
T Consensus 84 ~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~v~~~P~~~~id~~G~i~~~~ 134 (156)
T 1kng_A 84 ADNARRFLGRYGNPFGR--VGVDANGRASIEWGVYGVPETFVVGREGTIVYKL 134 (156)
T ss_dssp HHHHHHHHHHHCCCCSE--EEEETTSHHHHHTTCCSSCEEEEECTTSBEEEEE
T ss_pred HHHHHHHHHHcCCCCce--eeeCchhHHHHhcCcCccCeEEEEcCCCCEEEEE
Confidence 888888887544 332 2223345688999999999999999999998754
|
| >4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-15 Score=149.57 Aligned_cols=130 Identities=18% Similarity=0.176 Sum_probs=107.4
Q ss_pred CCCccee-ccCCCceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcC
Q 011791 245 GDLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 322 (477)
Q Consensus 245 ~~p~f~l-~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~ 322 (477)
..|+|.| +.+|++++|++++||+|||+|| +.||+.|..+++.|++ ....+++|++||.| +....++|.+++
T Consensus 3 k~p~F~l~~~~G~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~------~~~~~~~v~gis~D-~~~~~~~f~~~~ 75 (322)
T 4eo3_A 3 RVKHFELLTDEGKTFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSR------ENFEKAQVVGISRD-SVEALKRFKEKN 75 (322)
T ss_dssp BCCCCEEEETTSCEEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHHH------SCCTTEEEEEEESC-CHHHHHHHHHHH
T ss_pred CCCCcEEECCCcCEEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHHH------HhhCCCEEEEEeCC-CHHHHHHHHHhh
Confidence 4599999 9999999999999999999999 6799999999887753 12347999999998 567788899888
Q ss_pred CCceeccCcchhHHHHHhcCCC----CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHH
Q 011791 323 PWLALPFGDARKASLSRKFKVS----GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMA 393 (477)
Q Consensus 323 ~~~~~p~~~d~~~~l~~~~~v~----~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 393 (477)
+ ++||++.|.+..+++.|||. .+|++|+||++|+|+... ++.. ...+.+++++.++++.
T Consensus 76 ~-l~fp~l~D~~~~v~~~ygv~~~~~~~r~tfiId~~G~i~~~~-------~~v~----~~~h~~~~l~~~~~~~ 138 (322)
T 4eo3_A 76 D-LKVTLLSDPEGILHEFFNVLENGKTVRSTFLIDRWGFVRKEW-------RRVK----VEGHVQEVKEALDRLI 138 (322)
T ss_dssp T-CCSEEEECTTCHHHHHTTCEETTEECCEEEEECTTSBEEEEE-------ESCC----STTHHHHHHHHHHHHH
T ss_pred C-CceEEEEcCchHHHHhcCCCCCCcCccEEEEECCCCEEEEEE-------eCCC----ccccHHHHHHHHhhhc
Confidence 7 68999999999999999993 589999999999998763 2222 3556677777777665
|
| >1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3 | Back alignment and structure |
|---|
Probab=99.64 E-value=7.5e-17 Score=125.99 Aligned_cols=80 Identities=59% Similarity=1.174 Sum_probs=75.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHcCCchhhhcccc-ccceeeccCCceeccCCCCCCCeEEEEcCCCCCCcccccccccC
Q 011791 371 GAEAYPFTEERMKEIDGQYNEMAKGWPENVKHALH-EHELVLDRCGVYSCDGCDEEGRVWAFSCDECDFCLHPNCALGED 449 (477)
Q Consensus 371 g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~C~~~g~~w~~~~~~~~~~~~~~~~~~~~ 449 (477)
|++|||||++++.+|.+++.+.-+.+|.+++|..| +|+|.|.....++|+.|++.+.+|.|+|..|+|+||+.|++...
T Consensus 1 ~~~a~pfte~~~~~~~~~lhe~Ca~lP~~i~Hp~Hp~H~L~L~~~~~~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca~~p~ 80 (89)
T 1v5n_A 1 GSSGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIWSYHCDECDFDLHAKCALNED 80 (89)
T ss_dssp CCCCCCCCSSCCSHHHHHHHHHTSSSCSEECCSTTTTSCEEEECCSSCCCTTTSCCCCSCEEECTTTCCCCCHHHHHCSS
T ss_pred CCcccccCHHHHHHHHHHHhHHHHcCCceecCCCCCCCccEEeeCCCeEeCCCCCcCCCcEEEcCCCCCeEcHHhcCCCC
Confidence 68899999999999999999999999999999999 79999998888999999999999999999999999999998755
Q ss_pred C
Q 011791 450 K 450 (477)
Q Consensus 450 ~ 450 (477)
.
T Consensus 81 ~ 81 (89)
T 1v5n_A 81 T 81 (89)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-16 Score=141.94 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=94.1
Q ss_pred hccCcCCCcee-cC----CC-----CeEecCCC-CCC-EEEEEEecCCCccchhh-HHHHHHHHHHHhcCCCcEE-EEEE
Q 011791 81 VLTSHSRDFVI-SS----DG-----RKISVSDL-EGK-TIGLYFSMSSYKASAEF-TPRLVEVYEKLKGKGESFE-IVLI 146 (477)
Q Consensus 81 ~~g~~~p~fl~-~~----~g-----~~v~ls~l-~gk-~vll~F~a~wC~~C~~~-~p~l~~l~~~~~~~g~~~~-vv~i 146 (477)
.+|.++|+|.+ +. +| +.++++++ +|| +|+++||++||++|+.+ +|.|++++++|+++| ++ ||+|
T Consensus 8 ~~g~~aP~f~l~~~~~~~~G~~~~~~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g--~~~vv~I 85 (171)
T 2pwj_A 8 DILSAASNVSLQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKG--VDSVICV 85 (171)
T ss_dssp --CCCSSSBCCCSCEECCCSSCTTCCCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTT--CSEEEEE
T ss_pred cccCcCCCeEEecccccccCCccCcceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEE
Confidence 46789999955 55 47 89999996 996 67788999999999999 999999999999888 88 9999
Q ss_pred EcCCCHHHHHHhhcCCCC-ccccCCchhHHHHHHHcCccc-----------CCeEEEECCCCCccccch
Q 011791 147 SLDDEEESFKRDLGSMPW-LALPFKDKSREKLARYFELST-----------LPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 147 s~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~v~~-----------~P~~~lid~~G~i~~~~~ 203 (477)
|.|+ .+..+++.++... +.+|...+....+++.||+.. .|+.++|| +|+|++...
T Consensus 86 s~d~-~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~~~~~~~~g~~~~~~t~~I~-~G~I~~~~~ 152 (171)
T 2pwj_A 86 AIND-PYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSERWSAYVV-DGKVKALNV 152 (171)
T ss_dssp ESSC-HHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEEECTTTTCCEEECCEEEEEE-TTEEEEEEE
T ss_pred eCCC-HHHHHHHHHHhCCCCceEEEECCccHHHHHhCCccccccccCCcccceeEEEEE-CCEEEEEEe
Confidence 9984 4556666665553 245555555667889999852 56888888 999998764
|
| >2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A | Back alignment and structure |
|---|
Probab=99.62 E-value=4.5e-16 Score=145.57 Aligned_cols=119 Identities=22% Similarity=0.236 Sum_probs=95.6
Q ss_pred hccCcCCCcee-cCCCCeEecCCCCCC-EEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHH
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSDLEGK-TIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKR 157 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~l~gk-~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~ 157 (477)
.+|.++|+|.+ +.+| ++++++++|| +++|+|| ++||++|..+++.|++++++|+++| ++||+||+|.. +...+
T Consensus 4 ~iG~~aPdF~l~~~~G-~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~--v~vigIS~D~~-~~~~~ 79 (233)
T 2v2g_A 4 TLGEVFPNFEADSTIG-KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRG--VKLIALSCDNV-ADHKE 79 (233)
T ss_dssp CTTCBCCCCEEEETTC-CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTT--EEEEEEESSCH-HHHHH
T ss_pred CCCCCCCCcEEecCCC-CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcC--CEEEEEcCCCH-HHHHH
Confidence 46899999955 8889 8999999998 9999998 9999999999999999999999887 99999999963 33333
Q ss_pred hhc------CCC-CccccCCchhHHHHHHHcCcc------------cCCeEEEECCCCCccccch
Q 011791 158 DLG------SMP-WLALPFKDKSREKLARYFELS------------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 158 ~~~------~~~-~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~i~~~~~ 203 (477)
+++ ... .+.+|...+....+++.||+. .+|+++|||++|+|+....
T Consensus 80 ~~~~i~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~ 144 (233)
T 2v2g_A 80 WSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSIL 144 (233)
T ss_dssp HHHHHHHHHTCCSSCSSCEEECTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEE
T ss_pred HHHHHHHhhCcccCCceEEEECChHHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEEEEe
Confidence 333 220 234444445556789999984 5899999999999988764
|
| >3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-15 Score=138.62 Aligned_cols=139 Identities=18% Similarity=0.225 Sum_probs=111.5
Q ss_pred hhccCCCcce----e-ccCCCceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhH
Q 011791 241 VLVSGDLDFV----V-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTS 314 (477)
Q Consensus 241 ~~~~~~p~f~----l-~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~ 314 (477)
.++...|+|. + +.+|++++|++++||++||+|| +.||+.|..++..+++++++|++. +++|++||+| +...
T Consensus 27 ~vG~~APdF~~~a~l~d~~g~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~--g~~vigiS~D-s~~s 103 (219)
T 3tue_A 27 KINSPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNEL--NCEVLACSID-SEYA 103 (219)
T ss_dssp CTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTT--TEEEEEEESS-CHHH
T ss_pred ccCCcCCCCcccccccCCCCcEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhccC--CcEEEEeeCC-chhh
Confidence 4677789997 5 6788899999999999999999 899999999999999999999987 7999999999 5566
Q ss_pred HHHHHhcC------CCceeccCcchhHHHHHhcCCC----C--cceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHH
Q 011791 315 FDEFFKGM------PWLALPFGDARKASLSRKFKVS----G--IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERM 382 (477)
Q Consensus 315 ~~~~~~~~------~~~~~p~~~d~~~~l~~~~~v~----~--~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~ 382 (477)
-++|..+. ..+.||++.|.+..+++.|||- + ...+||||++|+|+.... +.. -..+++
T Consensus 104 h~~w~~~~~~~~~~~~l~fpllsD~~~~va~~yGv~~~~~g~~~R~tFiIDp~g~Ir~~~~------~~~----~~gr~~ 173 (219)
T 3tue_A 104 HLQWTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQGVAYRGLFIIDPHGMLRQITV------NDM----PVGRSV 173 (219)
T ss_dssp HHHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEE------ECT----TCCCCH
T ss_pred HHHHhhhhHHhcCccccccccccCcccHHHHHcCCcccCCCeeEEEEEEECCCCeEEEEEE------ecC----CCCCCH
Confidence 66776543 2478899999999999999983 3 357999999999987632 111 123445
Q ss_pred HHHHHHHHHH
Q 011791 383 KEIDGQYNEM 392 (477)
Q Consensus 383 ~~l~~~~~~~ 392 (477)
+++++.|+++
T Consensus 174 ~EvLr~l~aL 183 (219)
T 3tue_A 174 EEVLRLLEAF 183 (219)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666654
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-15 Score=127.11 Aligned_cols=108 Identities=15% Similarity=0.251 Sum_probs=81.4
Q ss_pred ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCc
Q 011791 252 GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGD 331 (477)
Q Consensus 252 ~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~ 331 (477)
+.+|........+||+++|+||++||++|+.+.|.+.+++++++. ++.++.|++|.+.
T Consensus 13 ~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~---~v~~~~v~~~~d~------------------- 70 (126)
T 2l57_A 13 SINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREG---KFNIYYARLEEEK------------------- 70 (126)
T ss_dssp CCSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSS---SCEEEEEETTSSH-------------------
T ss_pred ccchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcC---CeEEEEEeCCCCc-------------------
Confidence 444444445556789999999999999999999999999998863 5889999844332
Q ss_pred chhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCCc
Q 011791 332 ARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWP 397 (477)
Q Consensus 332 d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 397 (477)
...+++.|+|.++||+++++++|+++.+. .| ..+. ++|.+.+++.+...+
T Consensus 71 --~~~~~~~~~v~~~Pt~~~~~~~G~~~~~~-------~G----~~~~---~~l~~~l~~~~~~~~ 120 (126)
T 2l57_A 71 --NIDLAYKYDANIVPTTVFLDKEGNKFYVH-------QG----LMRK---NNIETILNSLGVKEG 120 (126)
T ss_dssp --HHHHHHHTTCCSSSEEEEECTTCCEEEEE-------ES----CCCH---HHHHHHHHHHCCCCC
T ss_pred --hHHHHHHcCCcceeEEEEECCCCCEEEEe-------cC----CCCH---HHHHHHHHHHhcccc
Confidence 24689999999999999999999998763 23 2223 456677776665433
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-15 Score=143.56 Aligned_cols=137 Identities=21% Similarity=0.365 Sum_probs=99.0
Q ss_pred eccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccC
Q 011791 251 VGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFG 330 (477)
Q Consensus 251 l~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~ 330 (477)
+.++++.+.....+||+++|+|||+||++|+.+.|.|.++++++++++.++.++.|+++...
T Consensus 18 ~~l~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~------------------ 79 (241)
T 3idv_A 18 LVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSAS------------------ 79 (241)
T ss_dssp EEECTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCH------------------
T ss_pred EEecccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCH------------------
Confidence 36667777665567999999999999999999999999999999876555788888777554
Q ss_pred cchhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCCch----hhh-----
Q 011791 331 DARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPE----NVK----- 401 (477)
Q Consensus 331 ~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~----- 401 (477)
.+++.|+|+++||++++ ++|+++...+ ..+. ++|.+.+++.+..... .+.
T Consensus 80 -----~l~~~~~v~~~Pt~~~~-~~g~~~~~~g------------~~~~---~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 138 (241)
T 3idv_A 80 -----VLASRFDVSGYPTIKIL-KKGQAVDYEG------------SRTQ---EEIVAKVREVSQPDWTPPPEVTLVLTKE 138 (241)
T ss_dssp -----HHHHHTTCCSSSEEEEE-ETTEEEECCS------------CSCH---HHHHHHHHHHHSTTCCCCCCSSEECCTT
T ss_pred -----HHHHhcCCCcCCEEEEE-cCCCcccccC------------cccH---HHHHHHHhhccCcccccccccceeccHH
Confidence 68999999999999999 5777764322 2233 4566666666543211 111
Q ss_pred ---ccccccceeeccCCceeccCCCCCC
Q 011791 402 ---HALHEHELVLDRCGVYSCDGCDEEG 426 (477)
Q Consensus 402 ---~~~~~~~~~l~~~~~~~~~~C~~~g 426 (477)
.....+..++..+.++||+.|+..-
T Consensus 139 ~~~~~~~~~~~~~v~f~a~wC~~C~~~~ 166 (241)
T 3idv_A 139 NFDEVVNDADIILVEFYAPWCGHCKKLA 166 (241)
T ss_dssp THHHHHHHCSEEEEEEECTTCTGGGGTH
T ss_pred HHHHhhccCCeEEEEEECCCCHHHHHhH
Confidence 1111445667778899999998753
|
| >3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A | Back alignment and structure |
|---|
Probab=99.61 E-value=3.8e-15 Score=128.06 Aligned_cols=84 Identities=21% Similarity=0.433 Sum_probs=75.4
Q ss_pred ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCc
Q 011791 252 GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGD 331 (477)
Q Consensus 252 ~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~ 331 (477)
+.+|....++.++||++||+||++||++|+.+.|.|.+++++++++ +.++.|++|...
T Consensus 38 ~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~------------------- 95 (141)
T 3hxs_A 38 DYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGK---IYIYKVNVDKEP------------------- 95 (141)
T ss_dssp CCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-------------------
T ss_pred ccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCc---eEEEEEECCCCH-------------------
Confidence 7788899999999999999999999999999999999999998754 888888887654
Q ss_pred chhHHHHHhcCCCCcceEEEECCCCcEEEe
Q 011791 332 ARKASLSRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 332 d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
.+++.|+|.++||+++++++|+++..
T Consensus 96 ----~~~~~~~v~~~Pt~~~~~~~g~~~~~ 121 (141)
T 3hxs_A 96 ----ELARDFGIQSIPTIWFVPMKGEPQVN 121 (141)
T ss_dssp ----HHHHHTTCCSSSEEEEECSSSCCEEE
T ss_pred ----HHHHHcCCCCcCEEEEEeCCCCEEEE
Confidence 58999999999999999999998743
|
| >1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-15 Score=142.63 Aligned_cols=120 Identities=19% Similarity=0.302 Sum_probs=93.3
Q ss_pred hccCcCCCcee-cCCCCeEecCCCCCC--EEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCH--HHH
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSDLEGK--TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE--ESF 155 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~l~gk--~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~--~~~ 155 (477)
.+|.++|+|.+ +.+| ++++++++|| +|+++||++||++|..+++.|++++++|+++| ++||+||+|... ..|
T Consensus 6 ~~G~~aP~F~l~~~~G-~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~--v~vi~IS~D~~~~~~~~ 82 (224)
T 1prx_A 6 LLGDVAPNFEANTTVG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRN--VKLIALSIDSVEDHLAW 82 (224)
T ss_dssp CTTCBCCCCEEEETTE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSCHHHHHHH
T ss_pred CCcCCCCCcEEecCCC-CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHH
Confidence 46899999955 8889 9999999998 56667799999999999999999999999887 999999999642 223
Q ss_pred HHhhcCC------CCccccCCchhHHHHHHHcCcc------------cCCeEEEECCCCCccccch
Q 011791 156 KRDLGSM------PWLALPFKDKSREKLARYFELS------------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 156 ~~~~~~~------~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~i~~~~~ 203 (477)
.+.+... ..+.+|...+....+++.||+. .+|+++|||++|+|+....
T Consensus 83 ~~~i~~~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~ 148 (224)
T 1prx_A 83 SKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSIL 148 (224)
T ss_dssp HHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEE
T ss_pred HHHHHHhhCcccccCcCcceeecCchHHHHHhCCCCcccccCCCccccceEEEEECCCCEEEEEEe
Confidence 3332110 1233444444556788999983 3799999999999988764
|
| >1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-15 Score=141.92 Aligned_cols=119 Identities=16% Similarity=0.187 Sum_probs=92.7
Q ss_pred hccCcCCCcee-cC--CCCeEecCCCCCC--EEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCH--H
Q 011791 81 VLTSHSRDFVI-SS--DGRKISVSDLEGK--TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE--E 153 (477)
Q Consensus 81 ~~g~~~p~fl~-~~--~g~~v~ls~l~gk--~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~--~ 153 (477)
.+|.++|+|.+ +. +| ++++++++|| +|+++||++||++|..+++.|++++++|+++| ++||+||+|... .
T Consensus 4 ~iG~~aP~F~l~~~~~~G-~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~--v~vi~vS~D~~~~~~ 80 (220)
T 1xcc_A 4 HLGATFPNFTAKASGIDG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLN--CKLIGFSCNSKESHD 80 (220)
T ss_dssp CTTCBCCCCEECBTTCSS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCHHHHH
T ss_pred CCCCCCCCcEeecccCCC-cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEeCCCHHHHH
Confidence 46899999965 77 88 8999999998 45556699999999999999999999999887 999999999642 2
Q ss_pred HHHHhhc----CCCCccccCCchhHHHHHHHcCcc------------cCCeEEEECCCCCccccch
Q 011791 154 SFKRDLG----SMPWLALPFKDKSREKLARYFELS------------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 154 ~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~i~~~~~ 203 (477)
.|.+.++ ... +.+|...+....+++.||+. .+|+++|||++|+++....
T Consensus 81 ~~~~~i~~~~~~~~-~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~ 145 (220)
T 1xcc_A 81 KWIEDIKYYGKLNK-WEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVL 145 (220)
T ss_dssp HHHHHHHHHHTCSC-CCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEE
T ss_pred HHHHHHHHHhcCCC-CcceeEECchhHHHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEEEe
Confidence 3433221 222 33444444556788999983 4799999999999988764
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.7e-14 Score=133.13 Aligned_cols=71 Identities=15% Similarity=0.231 Sum_probs=60.5
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.+++++|+|||+||++|+.+.|.+.++++++++.+..+.++.|+++.+. ...+++.|+|
T Consensus 29 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~---------------------~~~l~~~~~v 87 (244)
T 3q6o_A 29 SRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEET---------------------NSAVCRDFNI 87 (244)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTT---------------------THHHHHHTTC
T ss_pred CCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchh---------------------hHHHHHHcCC
Confidence 3589999999999999999999999999999874344999999885432 2568899999
Q ss_pred ccCCeEEEECCC
Q 011791 184 STLPTLVIIGPD 195 (477)
Q Consensus 184 ~~~P~~~lid~~ 195 (477)
.++|+++++++.
T Consensus 88 ~~~Pt~~~~~~g 99 (244)
T 3q6o_A 88 PGFPTVRFFXAF 99 (244)
T ss_dssp CSSSEEEEECTT
T ss_pred CccCEEEEEeCC
Confidence 999999999964
|
| >3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=123.22 Aligned_cols=84 Identities=21% Similarity=0.493 Sum_probs=72.8
Q ss_pred ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCc
Q 011791 252 GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGD 331 (477)
Q Consensus 252 ~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~ 331 (477)
..++..+.....+||+++|+||++||++|+++.|.+.+++++++++ +.++.|++|...
T Consensus 29 ~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~---v~~~~vd~d~~~------------------- 86 (128)
T 3ul3_B 29 QNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKR---IYLLKVDLDKNE------------------- 86 (128)
T ss_dssp CCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG---EEEEEEEGGGCH-------------------
T ss_pred cCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---eEEEEEECCCCH-------------------
Confidence 4556667777778999999999999999999999999999999864 888888877554
Q ss_pred chhHHHHHhcCCCCcceEEEECCCCcEEEec
Q 011791 332 ARKASLSRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 332 d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
.+++.|+|.++||++++ ++|+++.+.
T Consensus 87 ----~l~~~~~v~~~Pt~~~~-~~G~~~~~~ 112 (128)
T 3ul3_B 87 ----SLARKFSVKSLPTIILL-KNKTMLARK 112 (128)
T ss_dssp ----HHHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred ----HHHHHcCCCCcCEEEEE-ECCEEEEEe
Confidence 68999999999999999 799988873
|
| >3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-15 Score=139.02 Aligned_cols=115 Identities=10% Similarity=0.137 Sum_probs=92.1
Q ss_pred hccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCC-Cccch-----hhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHH
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSS-YKASA-----EFTPRLVEVYEKLKGKGESFEIVLISLDDEEE 153 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~w-C~~C~-----~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~ 153 (477)
.+|.++|+|.+ +.+|+.+++++++||+++|+||+.| |++|. .+++.|.++ + .| ++||+||.|+ ..
T Consensus 23 ~vG~~APdFtL~d~~G~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~--~g--v~VvgIS~Ds-~~ 94 (224)
T 3keb_A 23 RKGDYLPSFMLVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W--PH--LKLIVITVDS-PS 94 (224)
T ss_dssp CTTCBCCCCEEEETTSCEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C--TT--SEEEEEESSC-HH
T ss_pred CCCCCCCCeEEECCCCCEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c--CC--CEEEEEECCC-HH
Confidence 35889999955 8999999999999999999999998 99999 888888777 4 45 8999999984 45
Q ss_pred HHHHhhcCCCCccccCCchh-HHHHHHHcCccc---------CCeEEEECCCCCccccch
Q 011791 154 SFKRDLGSMPWLALPFKDKS-REKLARYFELST---------LPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~v~~---------~P~~~lid~~G~i~~~~~ 203 (477)
..+++.+++....++...+. ...+++.||+.. +|+++|||++|+|++...
T Consensus 95 ~~~~f~~~~gl~~fplLsD~~~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~~ 154 (224)
T 3keb_A 95 SLARARHEHGLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSER 154 (224)
T ss_dssp HHHHHHHHHCCTTCEEEESTTCTTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEEEE
T ss_pred HHHHHHHHcCCCCceEEEcCCchHHHHHhCCccccccccCCccCEEEEEcCCCEEEEEEe
Confidence 55666664442234554444 367899999864 799999999999998765
|
| >3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.4e-15 Score=136.58 Aligned_cols=124 Identities=19% Similarity=0.276 Sum_probs=99.6
Q ss_pred hhhhccCcCCCce----ecCCCCeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCH
Q 011791 78 LRSVLTSHSRDFV----ISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE 152 (477)
Q Consensus 78 ~~~~~g~~~p~fl----~~~~g~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~ 152 (477)
+...+|+++|||. .+.++++|+|++++||+|+|+|| +.||+.|..+++.+++.+++|++.| ++||+||.|...
T Consensus 21 M~~~VG~~APdF~l~a~~d~~~~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g--~~vigiS~Ds~~ 98 (216)
T 3sbc_A 21 MVAQVQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQG--AQVLFASTDSEY 98 (216)
T ss_dssp -CCCTTSBCCCCCEEEEETTEEEEECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTT--EEEEEEESSCHH
T ss_pred chhhcCCcCCCCCCcceECCCCcEEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCC--ceEEEeecCchh
Confidence 3356899999994 36778999999999999999999 9999999999999999999999998 999999999632
Q ss_pred --HHHHHhhcC---CCCccccCCchhHHHHHHHcCc------ccCCeEEEECCCCCccccch
Q 011791 153 --ESFKRDLGS---MPWLALPFKDKSREKLARYFEL------STLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 153 --~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~v------~~~P~~~lid~~G~i~~~~~ 203 (477)
..|.+..+. ..-+.+|...+...++++.||+ ...+.++|||++|+|.+..+
T Consensus 99 sh~aw~~~~~~~~~~~~l~fpllsD~~~~vak~YGv~~~~~g~~~R~tFiID~~G~Ir~~~v 160 (216)
T 3sbc_A 99 SLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITI 160 (216)
T ss_dssp HHHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEE
T ss_pred hHHHHHHHHHHhCCccCcccceEeCCCCHHHHHcCCeeccCCceeeEEEEECCCCeEEEEEE
Confidence 334433321 1235566666677889999998 24689999999999987543
|
| >2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.5e-15 Score=126.52 Aligned_cols=69 Identities=9% Similarity=0.173 Sum_probs=61.8
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++|||+|||+||+||+.+.|.|.+++++++++ +.|+.|++|..+ +++..|+|+
T Consensus 41 ~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~---v~f~kVDVDe~~-----------------------e~a~~y~V~ 94 (160)
T 2av4_A 41 ERLVCIRFGHDYDPDCMKMDELLYKVADDIKNF---CVIYLVDITEVP-----------------------DFNTMYELY 94 (160)
T ss_dssp SSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTCC-----------------------TTTTTTTCC
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHccCC---cEEEEEECCCCH-----------------------HHHHHcCCC
Confidence 689999999999999999999999999999765 778888888654 589999999
Q ss_pred CcceEEEECCCCcEEE
Q 011791 345 GIPMLVAIGPSGRTIT 360 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~ 360 (477)
++||+++| ++|+.+.
T Consensus 95 siPT~~fF-k~G~~v~ 109 (160)
T 2av4_A 95 DPVSVMFF-YRNKHMM 109 (160)
T ss_dssp SSEEEEEE-ETTEEEE
T ss_pred CCCEEEEE-ECCEEEE
Confidence 99999999 7888873
|
| >3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-15 Score=142.36 Aligned_cols=120 Identities=14% Similarity=0.201 Sum_probs=94.8
Q ss_pred hccCcCCCcee-cCCCCeEec-CCC--CCCE-EEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCH--H
Q 011791 81 VLTSHSRDFVI-SSDGRKISV-SDL--EGKT-IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE--E 153 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~l-s~l--~gk~-vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~--~ 153 (477)
.+|.++|+|.+ +.+| .+++ +++ +||+ |+++||++||++|..+++.|.+++++|+++| ++||+||+|+.. .
T Consensus 6 ~iG~~aPdF~l~~~~G-~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~g--v~VI~VS~Ds~~~~~ 82 (249)
T 3a2v_A 6 LIGERFPEMEVTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG--VDLIGLSVDSVFSHI 82 (249)
T ss_dssp CTTSBCCCEEEEETTE-EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTT--EEEEEEESSCHHHHH
T ss_pred CCCCCCCCeEEEcCCC-CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCC--cEEEEEECCCHHHHH
Confidence 57999999965 7778 7999 999 9996 5568899999999999999999999999887 999999998643 2
Q ss_pred HHHHhhcCC--CCccccCCchhHHHHHHHcCcc-------cCCeEEEECCCCCccccch
Q 011791 154 SFKRDLGSM--PWLALPFKDKSREKLARYFELS-------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 154 ~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~i~~~~~ 203 (477)
.|.+.+... .-+.+|...+....+++.||+. .+|+++|||++|+++....
T Consensus 83 ~w~~~~~~~~~~~i~fPil~D~~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~ 141 (249)
T 3a2v_A 83 KWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLY 141 (249)
T ss_dssp HHHHHHHHHTCCCCCSCEEECTTSHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEEE
T ss_pred HHHHHHHHhcCCCCceeEEECCchHHHHHhCCccccCCCcccceEEEECCCCeEEEEEe
Confidence 344433210 0233444445556789999997 8999999999999988754
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-15 Score=128.59 Aligned_cols=93 Identities=18% Similarity=0.399 Sum_probs=74.7
Q ss_pred cCCCcce-e-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHH---HHHHHHHHhcCCcEEEEEEeCCCChhHHHHH
Q 011791 244 SGDLDFV-V-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEF 318 (477)
Q Consensus 244 ~~~p~f~-l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~ 318 (477)
...|+|. + +.++....+++.+||++||+||++||++|+.+.|.+ .+++++++ ++.++.|+++...
T Consensus 8 ~~~~~f~~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~----~~~~~~vd~~~~~------ 77 (134)
T 2fwh_A 8 QTHLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA----DTVLLQANVTAND------ 77 (134)
T ss_dssp --CCCCEECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT----TSEEEEEECTTCC------
T ss_pred ccCCCcEEecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc----CcEEEEEeCCCCc------
Confidence 3456776 4 555666677777899999999999999999999998 88887774 3888888887532
Q ss_pred HhcCCCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEE
Q 011791 319 FKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 359 (477)
Q Consensus 319 ~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv 359 (477)
+....+++.|+|.++|+++++|++|+++
T Consensus 78 -------------~~~~~l~~~~~v~~~Pt~~~~d~~G~~v 105 (134)
T 2fwh_A 78 -------------AQDVALLKHLNVLGLPTILFFDGQGQEH 105 (134)
T ss_dssp -------------HHHHHHHHHTTCCSSSEEEEECTTSCBC
T ss_pred -------------chHHHHHHHcCCCCCCEEEEECCCCCEe
Confidence 2245789999999999999999999997
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-14 Score=121.99 Aligned_cols=77 Identities=31% Similarity=0.508 Sum_probs=65.8
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHH--HHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhc
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLI--DAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 341 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~--~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 341 (477)
.||++||+||++||++|+.+.|.|. ++.++++++ +.++.|+++.. +....+++.|
T Consensus 28 ~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~---~~~~~vd~~~~--------------------~~~~~l~~~~ 84 (133)
T 3fk8_A 28 THKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKH---FEVVKIDVGNF--------------------DRNLELSQAY 84 (133)
T ss_dssp HTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHH---CEEEEEECTTT--------------------TSSHHHHHHT
T ss_pred cCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCC---EEEEEEeCCcc--------------------cchHHHHHHh
Confidence 3899999999999999999999999 999988764 88888888421 1134689999
Q ss_pred CC---CCcceEEEECCCCcEEEecc
Q 011791 342 KV---SGIPMLVAIGPSGRTITKEA 363 (477)
Q Consensus 342 ~v---~~~Pt~~lid~~G~iv~~~~ 363 (477)
+| .++||++++|++|+++.+..
T Consensus 85 ~v~~~~~~Pt~~~~d~~G~~~~~~~ 109 (133)
T 3fk8_A 85 GDPIQDGIPAVVVVNSDGKVRYTTK 109 (133)
T ss_dssp TCGGGGCSSEEEEECTTSCEEEECC
T ss_pred CCccCCccceEEEECCCCCEEEEec
Confidence 99 99999999999999998853
|
| >3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-14 Score=123.16 Aligned_cols=105 Identities=20% Similarity=0.433 Sum_probs=82.9
Q ss_pred ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCc
Q 011791 252 GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGD 331 (477)
Q Consensus 252 ~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~ 331 (477)
++++..+......+|+++|+||++||++|+.+.|.|++++++++++ +.++.|++|...
T Consensus 42 ~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~---~~~~~vd~~~~~------------------- 99 (148)
T 3p2a_A 42 NATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGK---VRFVKVNTEAEP------------------- 99 (148)
T ss_dssp ECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-------------------
T ss_pred ecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCc---eEEEEEECcCCH-------------------
Confidence 6677776655567899999999999999999999999999998754 888888887554
Q ss_pred chhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCCc
Q 011791 332 ARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWP 397 (477)
Q Consensus 332 d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 397 (477)
.+++.|+|.++||++++ ++|+++.+. .| ..+. ++|.+.+++++...|
T Consensus 100 ----~l~~~~~v~~~Pt~~~~-~~G~~~~~~-------~G----~~~~---~~l~~~l~~~l~~~~ 146 (148)
T 3p2a_A 100 ----ALSTRFRIRSIPTIMLY-RNGKMIDML-------NG----AVPK---APFDNWLDEQLSRDP 146 (148)
T ss_dssp ----HHHHHTTCCSSSEEEEE-ETTEEEEEE-------SS----CCCH---HHHHHHHHHHHHSCC
T ss_pred ----HHHHHCCCCccCEEEEE-ECCeEEEEE-------eC----CCCH---HHHHHHHHHHhcccC
Confidence 68999999999999999 699998763 23 2233 556666777666544
|
| >2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.2e-15 Score=128.26 Aligned_cols=113 Identities=19% Similarity=0.292 Sum_probs=82.3
Q ss_pred CCCceecccCCCCEEEEEEe-CCCChhhHhHhHHH---HHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceecc
Q 011791 254 NGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPF 329 (477)
Q Consensus 254 ~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~ 329 (477)
.++.+.++..+||+++|+|| |+||++|+.+.|.+ .++.+.+.. ++.++.|+++.... +.+++
T Consensus 36 ~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~---~~~~v~vd~~~~~~-----------~~~~~ 101 (154)
T 2ju5_A 36 YAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGV---HLHMVEVDFPQKNH-----------QPEEQ 101 (154)
T ss_dssp HHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHH---HCEEEEEECCSSCC-----------CCHHH
T ss_pred HHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcC---cEEEEEecCccccC-----------CChhh
Confidence 45667777778999999999 99999999999999 677555544 37788887775431 11221
Q ss_pred CcchhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHc
Q 011791 330 GDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAK 394 (477)
Q Consensus 330 ~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 394 (477)
.+....+.+.|+|.++||++|||++|+++.+. |.. +...+++.+.++++++
T Consensus 102 -~~~~~~l~~~~~v~~~Pt~~~~d~~G~~~~~~--------G~~-----~~~~~~l~~~l~~~l~ 152 (154)
T 2ju5_A 102 -RQKNQELKAQYKVTGFPELVFIDAEGKQLARM--------GFE-----PGGGAAYVSKVKSALK 152 (154)
T ss_dssp -HHHHHHHHHHTTCCSSSEEEEECTTCCEEEEE--------CCC-----TTCHHHHHHHHHHHHT
T ss_pred -HhhHHHHHHHcCCCCCCEEEEEcCCCCEEEEe--------cCC-----CCCHHHHHHHHHHHHh
Confidence 24456889999999999999999999999873 321 1123556667766654
|
| >3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-14 Score=117.67 Aligned_cols=71 Identities=23% Similarity=0.488 Sum_probs=62.4
Q ss_pred CCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcC
Q 011791 263 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 342 (477)
Q Consensus 263 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 342 (477)
.++|+++|+||++||++|+.+.|.|.+++++++ ++.++.|++|... .+++.|+
T Consensus 22 ~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~----~~~~~~vd~~~~~-----------------------~l~~~~~ 74 (109)
T 3f3q_A 22 AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP----QADFYKLDVDELG-----------------------DVAQKNE 74 (109)
T ss_dssp TSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTCH-----------------------HHHHHTT
T ss_pred hcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC----CCEEEEEECCCCH-----------------------HHHHHcC
Confidence 358999999999999999999999999998874 3778888887554 6899999
Q ss_pred CCCcceEEEECCCCcEEEe
Q 011791 343 VSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 343 v~~~Pt~~lid~~G~iv~~ 361 (477)
|.++||+++++ +|+++.+
T Consensus 75 v~~~Pt~~~~~-~G~~~~~ 92 (109)
T 3f3q_A 75 VSAMPTLLLFK-NGKEVAK 92 (109)
T ss_dssp CCSSSEEEEEE-TTEEEEE
T ss_pred CCccCEEEEEE-CCEEEEE
Confidence 99999999996 9999887
|
| >2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-14 Score=122.57 Aligned_cols=71 Identities=21% Similarity=0.361 Sum_probs=63.4
Q ss_pred CCEEEEEEeCCCC--hhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcC
Q 011791 265 GKTILLYFSAHWC--PPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 342 (477)
Q Consensus 265 gk~vll~F~a~wC--~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 342 (477)
++++||+|||+|| ++|+.+.|.|.++.++|.++ +.|+.|++|..+ .++..|+
T Consensus 33 ~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~---v~~~KVdvDe~~-----------------------~la~~yg 86 (137)
T 2qsi_A 33 GKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGR---LVAAEVAAEAER-----------------------GLMARFG 86 (137)
T ss_dssp SSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTT---EEEEEECGGGHH-----------------------HHHHHHT
T ss_pred CCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCC---cEEEEEECCCCH-----------------------HHHHHcC
Confidence 3599999999999 99999999999999999765 888888877543 7999999
Q ss_pred CCCcceEEEECCCCcEEEec
Q 011791 343 VSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 343 v~~~Pt~~lid~~G~iv~~~ 362 (477)
|+++||++|| ++|+++.+.
T Consensus 87 V~siPTlilF-kdG~~v~~~ 105 (137)
T 2qsi_A 87 VAVCPSLAVV-QPERTLGVI 105 (137)
T ss_dssp CCSSSEEEEE-ECCEEEEEE
T ss_pred CccCCEEEEE-ECCEEEEEE
Confidence 9999999999 899999983
|
| >3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.7e-14 Score=115.61 Aligned_cols=83 Identities=20% Similarity=0.350 Sum_probs=69.3
Q ss_pred ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCc
Q 011791 252 GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGD 331 (477)
Q Consensus 252 ~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~ 331 (477)
.++++.+...-.++++++|+||++||++|+.+.|.+.+++++++++ +.++.|++|...
T Consensus 8 ~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~------------------- 65 (109)
T 3tco_A 8 VLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGK---AVFGRLNVDENQ------------------- 65 (109)
T ss_dssp ECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTCH-------------------
T ss_pred EecHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCC---ceEEEEccccCH-------------------
Confidence 4455555433335899999999999999999999999999998764 788888887554
Q ss_pred chhHHHHHhcCCCCcceEEEECCCCcEEEe
Q 011791 332 ARKASLSRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 332 d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
.+++.|+|.++|+++++ ++|+++.+
T Consensus 66 ----~~~~~~~i~~~Pt~~~~-~~g~~~~~ 90 (109)
T 3tco_A 66 ----KIADKYSVLNIPTTLIF-VNGQLVDS 90 (109)
T ss_dssp ----HHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred ----HHHHhcCcccCCEEEEE-cCCcEEEe
Confidence 68999999999999999 89999887
|
| >2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A | Back alignment and structure |
|---|
Probab=99.53 E-value=8.3e-15 Score=124.35 Aligned_cols=95 Identities=9% Similarity=0.131 Sum_probs=72.4
Q ss_pred CCCEEEEEEeCCC--ChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhc
Q 011791 264 AGKTILLYFSAHW--CPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 341 (477)
Q Consensus 264 ~gk~vll~F~a~w--C~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 341 (477)
.+++|||+|||+| |++|+.+.|.|.+++++|.++ .+.|+.|++|.. .+++.+|
T Consensus 33 ~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~--~v~~~KVdvDe~-----------------------~~lA~~y 87 (140)
T 2qgv_A 33 QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDY--TWQVAIADLEQS-----------------------EAIGDRF 87 (140)
T ss_dssp TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTS--CCEEEECCHHHH-----------------------HHHHHHH
T ss_pred CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCC--eEEEEEEECCCC-----------------------HHHHHHc
Confidence 3678999999999 999999999999999998642 277777776643 4799999
Q ss_pred CCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCCch
Q 011791 342 KVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPE 398 (477)
Q Consensus 342 ~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 398 (477)
+|+++||++|| ++|+++.+ ..|+.. . ++|.+.+++.+...+.
T Consensus 88 gV~sIPTlilF-k~G~~v~~-------~~G~~~----k---~~l~~~i~~~l~~~~~ 129 (140)
T 2qgv_A 88 GAFRFPATLVF-TGGNYRGV-------LNGIHP----W---AELINLMRGLVEPQQE 129 (140)
T ss_dssp TCCSSSEEEEE-ETTEEEEE-------EESCCC----H---HHHHHHHHHHHC----
T ss_pred CCccCCEEEEE-ECCEEEEE-------EecCCC----H---HHHHHHHHHHhcCCCC
Confidence 99999999999 89999988 344332 2 4566677777654443
|
| >3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-14 Score=131.37 Aligned_cols=120 Identities=19% Similarity=0.254 Sum_probs=96.4
Q ss_pred hccCcCCCce----e-cCCCCeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCH--
Q 011791 81 VLTSHSRDFV----I-SSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE-- 152 (477)
Q Consensus 81 ~~g~~~p~fl----~-~~~g~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~-- 152 (477)
.+|+++|||. + +.+|+.|+|++++||+|+|+|| +.||+.|..++..+++++++|++.| ++||+||.|+..
T Consensus 27 ~vG~~APdF~~~a~l~d~~g~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g--~~vigiS~Ds~~sh 104 (219)
T 3tue_A 27 KINSPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELN--CEVLACSIDSEYAH 104 (219)
T ss_dssp CTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTT--EEEEEEESSCHHHH
T ss_pred ccCCcCCCCcccccccCCCCcEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCC--cEEEEeeCCchhhH
Confidence 5799999994 3 7889999999999999999999 8999999999999999999999998 999999999632
Q ss_pred HHHHHhhc-CC--CCccccCCchhHHHHHHHcCcc------cCCeEEEECCCCCccccc
Q 011791 153 ESFKRDLG-SM--PWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 153 ~~~~~~~~-~~--~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~ 202 (477)
..|.+... .. .-+.+|...+...++++.||+- ....++|||++|+|....
T Consensus 105 ~~w~~~~~~~~~~~~l~fpllsD~~~~va~~yGv~~~~~g~~~R~tFiIDp~g~Ir~~~ 163 (219)
T 3tue_A 105 LQWTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQGVAYRGLFIIDPHGMLRQIT 163 (219)
T ss_dssp HHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHhhhhHHhcCccccccccccCcccHHHHHcCCcccCCCeeEEEEEEECCCCeEEEEE
Confidence 33432211 11 2344555666777899999982 246899999999987654
|
| >2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3.7e-14 Score=116.84 Aligned_cols=71 Identities=27% Similarity=0.548 Sum_probs=64.1
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+|+++|+||++||++|+.+.|.+.+++++++++ +.++.|++|.+. .+++.|+|
T Consensus 16 ~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~---v~~~~vd~~~~~-----------------------~l~~~~~v 69 (112)
T 2voc_A 16 SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDK---LKIVKIDVDENQ-----------------------ETAGKYGV 69 (112)
T ss_dssp SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTT---CEEEEEETTTCC-----------------------SHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---cEEEEEECCCCH-----------------------HHHHHcCC
Confidence 6899999999999999999999999999998753 889999888653 58899999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
.++||++++ ++|+++.+
T Consensus 70 ~~~Pt~~~~-~~G~~~~~ 86 (112)
T 2voc_A 70 MSIPTLLVL-KDGEVVET 86 (112)
T ss_dssp CSBSEEEEE-ETTEEEEE
T ss_pred CcccEEEEE-eCCEEEEE
Confidence 999999999 89999876
|
| >3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-13 Score=141.92 Aligned_cols=188 Identities=12% Similarity=0.112 Sum_probs=113.0
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.||+|+|+|||+||++|+.+.|.+.++++++++.+..+.++.|++|.+. ...+++.|+|
T Consensus 29 ~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~---------------------~~~l~~~~~V 87 (519)
T 3t58_A 29 SSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEET---------------------NSAVCREFNI 87 (519)
T ss_dssp CSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGG---------------------GHHHHHHTTC
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccc---------------------cHHHHHHcCC
Confidence 3689999999999999999999999999999874445899888886432 2568999999
Q ss_pred ccCCeEEEECC---CCCccccchhhHHhhcCCCCCCCChhhHHHHHHHHHHHhhhhhhhhhhccCCCcceeccCCCce--
Q 011791 184 STLPTLVIIGP---DGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKV-- 258 (477)
Q Consensus 184 ~~~P~~~lid~---~G~i~~~~~~~~i~~~g~~a~P~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~p~f~l~~~g~~~-- 258 (477)
.++|+++++++ +|+.+.... |. .+.+.+.......- .... ... ....|.+.. .+.+.+
T Consensus 88 ~~~PTl~~f~~g~~~G~~~~~~~-------g~----~~~~~L~~~l~~~l---~~~~-~~~-P~~~p~l~~-it~~~l~~ 150 (519)
T 3t58_A 88 AGFPTVRFFQAFTKNGSGATLPG-------AG----ANVQTLRMRLIDAL---ESHR-DTW-PPACPPLEP-AKLNDIDG 150 (519)
T ss_dssp CSBSEEEEECTTCCSCCCEEECC-------SS----CCHHHHHHHHHHHH---TTCC-SCC-CTTCCCCSB-CCHHHHTT
T ss_pred cccCEEEEEcCcccCCCceeEec-------CC----CCHHHHHHHHHHHH---hhcc-ccC-CCCCCccCc-CCHHHHHH
Confidence 99999999997 555433321 11 12333332221111 0000 000 000011111 000111
Q ss_pred ecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHH
Q 011791 259 PVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLS 338 (477)
Q Consensus 259 ~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~ 338 (477)
-++.-..++++|.|.... .+...++...+... .++.|-.+. +.+ ..+.
T Consensus 151 ~l~~~~~~~vallF~~~~-------s~~~~~~~ldl~~~-~~v~v~~v~-~~~-----------------------~~l~ 198 (519)
T 3t58_A 151 FFTRNKADYLALVFERED-------SYLGREVTLDLSQY-HAVAVRRVL-NTE-----------------------SDLV 198 (519)
T ss_dssp GGGSCCCSEEEEEEECTT-------CCHHHHHHHHTTTC-TTEEEEEEE-TTC-----------------------HHHH
T ss_pred HhccCCCCeEEEEecCCc-------hHHHHHHHHHhhcc-CCeeEEEec-Cch-----------------------HHHH
Confidence 011223578888888543 22334444455432 245443332 222 3689
Q ss_pred HhcCCCCcceEEEECCCCcEEEe
Q 011791 339 RKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 339 ~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
++|||+.+|++++|+++|++...
T Consensus 199 ~kfgV~~~Pslvl~~~nGk~~~~ 221 (519)
T 3t58_A 199 NKFGVTDFPSCYLLLRNGSVSRV 221 (519)
T ss_dssp HHHTCCCSSEEEEEETTSCEEEC
T ss_pred HHcCCCCCCeEEEEeCCCceeec
Confidence 99999999999999999987543
|
| >2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.8e-14 Score=120.54 Aligned_cols=93 Identities=20% Similarity=0.444 Sum_probs=74.0
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+|+++|+||++||++|+.+.|.|.+++++++++ +.++.|++|... .+++.|+|
T Consensus 37 ~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~~-----------------------~l~~~~~v 90 (136)
T 2l5l_A 37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQ---IVIYKVDTEKEQ-----------------------ELAGAFGI 90 (136)
T ss_dssp CSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC---EEEEEEeCCCCH-----------------------HHHHHcCC
Confidence 3789999999999999999999999999998754 888888887554 58899999
Q ss_pred CCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCCc
Q 011791 344 SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWP 397 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 397 (477)
.++||++++|++|+++... | ..+. ++|.+.+++.+...+
T Consensus 91 ~~~Pt~~~~~~~G~~~~~~--------G----~~~~---~~l~~~l~~~~~~~~ 129 (136)
T 2l5l_A 91 RSIPSILFIPMEGKPEMAQ--------G----AMPK---ASFKKAIDEFLLKKE 129 (136)
T ss_dssp CSSCEEEEECSSSCCEEEE--------S----CCCH---HHHHHHHHHHHTSCT
T ss_pred CCCCEEEEECCCCcEEEEe--------C----CCCH---HHHHHHHHHHhhccC
Confidence 9999999999999987432 2 2233 556666776665433
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.2e-14 Score=119.58 Aligned_cols=101 Identities=16% Similarity=0.292 Sum_probs=74.7
Q ss_pred eecccCCCCEEEEEEeCCCChhhHhHhHHH---HHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchh
Q 011791 258 VPVSDLAGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARK 334 (477)
Q Consensus 258 ~~l~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~ 334 (477)
+.++..+||++||+||++||++|+.+.|.+ .++.+.++.. +.++.|+++.+. .
T Consensus 20 ~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~---------------------~ 75 (130)
T 2kuc_A 20 LKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRH---FVNLKMDMEKGE---------------------G 75 (130)
T ss_dssp HHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHH---SEEEEECSSSTT---------------------H
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcC---eEEEEEecCCcc---------------------h
Confidence 344445689999999999999999999998 6666666554 666666665422 3
Q ss_pred HHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCC
Q 011791 335 ASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGW 396 (477)
Q Consensus 335 ~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 396 (477)
..+++.|+|.++|+++++|++|+++.+. .|. .+. ++|.+.+++.+...
T Consensus 76 ~~~~~~~~v~~~Pt~~~~d~~G~~~~~~-------~G~----~~~---~~l~~~l~~~~~~~ 123 (130)
T 2kuc_A 76 VELRKKYGVHAYPTLLFINSSGEVVYRL-------VGA----EDA---PELLKKVKLGVESE 123 (130)
T ss_dssp HHHHHHTTCCSSCEEEEECTTSCEEEEE-------ESC----CCH---HHHHHHHHHHHSCC
T ss_pred HHHHHHcCCCCCCEEEEECCCCcEEEEe-------cCC----CCH---HHHHHHHHHHHHhc
Confidence 4789999999999999999999998763 332 222 55677777766553
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-14 Score=118.60 Aligned_cols=70 Identities=20% Similarity=0.422 Sum_probs=61.7
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
++|+++|+|||+||++|+.+.|.|.+++++++ ++.++.|++|... .+++.|+|
T Consensus 30 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~d~~~-----------------------~l~~~~~v 82 (116)
T 3qfa_C 30 GDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS----NVIFLEVDVDDCQ-----------------------DVASECEV 82 (116)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHTTCT----TSEEEEEETTTTH-----------------------HHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC----CCEEEEEECCCCH-----------------------HHHHHcCC
Confidence 58999999999999999999999999888764 3788888887543 68999999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
.++||++++ ++|+++.+
T Consensus 83 ~~~Pt~~~~-~~G~~~~~ 99 (116)
T 3qfa_C 83 KSMPTFQFF-KKGQKVGE 99 (116)
T ss_dssp CSSSEEEEE-SSSSEEEE
T ss_pred ccccEEEEE-eCCeEEEE
Confidence 999999999 89999877
|
| >2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-13 Score=112.04 Aligned_cols=83 Identities=24% Similarity=0.469 Sum_probs=67.9
Q ss_pred ccCCCceeccc-CCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccC
Q 011791 252 GKNGGKVPVSD-LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFG 330 (477)
Q Consensus 252 ~~~g~~~~l~~-~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~ 330 (477)
.+++..+.... -.+|+++|+||++||++|+.+.|.+.+++++++++ +.++.|+++.+.
T Consensus 6 ~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~~------------------ 64 (108)
T 2trx_A 6 HLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNP------------------ 64 (108)
T ss_dssp ECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTCT------------------
T ss_pred ecchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCC---cEEEEEECCCCH------------------
Confidence 44455554222 24799999999999999999999999999988754 888888887553
Q ss_pred cchhHHHHHhcCCCCcceEEEECCCCcEEEe
Q 011791 331 DARKASLSRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 331 ~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
.+++.|+|.++||++++ ++|+++.+
T Consensus 65 -----~~~~~~~v~~~Pt~~~~-~~G~~~~~ 89 (108)
T 2trx_A 65 -----GTAPKYGIRGIPTLLLF-KNGEVAAT 89 (108)
T ss_dssp -----THHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred -----HHHHHcCCcccCEEEEE-eCCEEEEE
Confidence 57899999999999999 89999876
|
| >2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.9e-14 Score=117.66 Aligned_cols=84 Identities=24% Similarity=0.456 Sum_probs=69.2
Q ss_pred eccCCCceecccC-CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceecc
Q 011791 251 VGKNGGKVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPF 329 (477)
Q Consensus 251 l~~~g~~~~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~ 329 (477)
+.++++.+....+ .+|+++|+||++||++|+.+.|.+.+++++++++ +.++.|++|...
T Consensus 25 ~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~~~~~----------------- 84 (128)
T 2o8v_B 25 IHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGK---LTVAKLNIDQNP----------------- 84 (128)
T ss_dssp EEECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTT---EEEEEEETTTCC-----------------
T ss_pred EecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---eEEEEEECCCCH-----------------
Confidence 3455565543222 5899999999999999999999999999988754 888888887553
Q ss_pred CcchhHHHHHhcCCCCcceEEEECCCCcEEEe
Q 011791 330 GDARKASLSRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 330 ~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
.+++.|+|.++||++++ ++|+++.+
T Consensus 85 ------~l~~~~~v~~~Pt~~~~-~~G~~~~~ 109 (128)
T 2o8v_B 85 ------GTAPKYGIRGIPTLLLF-KNGEVAAT 109 (128)
T ss_dssp ------TTSGGGTCCSSSEEEEE-ETTEEEEE
T ss_pred ------HHHHHcCCCccCEEEEE-eCCEEEEE
Confidence 47889999999999999 89999876
|
| >2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.2e-14 Score=119.06 Aligned_cols=106 Identities=26% Similarity=0.450 Sum_probs=79.3
Q ss_pred eccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccC
Q 011791 251 VGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFG 330 (477)
Q Consensus 251 l~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~ 330 (477)
..+++..+......+|++||+||++||++|+.+.|.|.++++++++++.++.++.|+++...
T Consensus 20 ~~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~------------------ 81 (140)
T 2dj1_A 20 WVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSAS------------------ 81 (140)
T ss_dssp EECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCH------------------
T ss_pred EEcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccH------------------
Confidence 35666666544446899999999999999999999999999999875445777777666443
Q ss_pred cchhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcC
Q 011791 331 DARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKG 395 (477)
Q Consensus 331 ~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 395 (477)
.+++.|+|.++||++++ ++|++... .| ..+. +.|.+.+++++..
T Consensus 82 -----~~~~~~~v~~~Pt~~~~-~~G~~~~~--------~g----~~~~---~~l~~~l~~~~~~ 125 (140)
T 2dj1_A 82 -----MLASKFDVSGYPTIKIL-KKGQAVDY--------DG----SRTQ---EEIVAKVREVSQP 125 (140)
T ss_dssp -----HHHHHTTCCSSSEEEEE-ETTEEEEC--------CS----CCCH---HHHHHHHHHHHSS
T ss_pred -----HHHHHCCCCccCeEEEE-ECCcEEEc--------CC----CCCH---HHHHHHHHHhcCC
Confidence 68999999999999999 78984332 22 1223 5567777777654
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3.2e-14 Score=121.91 Aligned_cols=94 Identities=26% Similarity=0.489 Sum_probs=75.8
Q ss_pred CCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcC
Q 011791 263 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 342 (477)
Q Consensus 263 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 342 (477)
.+||+++|+||++||++|+.+.|.|++++++++ ++.++.|++|... .+++.|+
T Consensus 44 ~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~----~v~~~~v~~~~~~-----------------------~~~~~~~ 96 (139)
T 3d22_A 44 RDGKIVLANFSARWCGPSRQIAPYYIELSENYP----SLMFLVIDVDELS-----------------------DFSASWE 96 (139)
T ss_dssp HHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTSH-----------------------HHHHHTT
T ss_pred hcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC----CCEEEEEeCcccH-----------------------HHHHHcC
Confidence 458999999999999999999999999988873 4888888887553 6899999
Q ss_pred CCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCCchh
Q 011791 343 VSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPEN 399 (477)
Q Consensus 343 v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 399 (477)
|.++||++++ ++|+++.+. .|. +. ++|.+.+++++.+.|.+
T Consensus 97 v~~~Pt~~~~-~~G~~~~~~-------~G~-----~~---~~l~~~l~~~~~~~~~~ 137 (139)
T 3d22_A 97 IKATPTFFFL-RDGQQVDKL-------VGA-----NK---PELHKKITAILDSLPPS 137 (139)
T ss_dssp CCEESEEEEE-ETTEEEEEE-------ESC-----CH---HHHHHHHHHHHHTSCTT
T ss_pred CCcccEEEEE-cCCeEEEEE-------eCC-----CH---HHHHHHHHHHhccCCCC
Confidence 9999999999 899998773 332 22 55777777777665543
|
| >1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A | Back alignment and structure |
|---|
Probab=99.50 E-value=5.3e-14 Score=114.13 Aligned_cols=71 Identities=25% Similarity=0.577 Sum_probs=63.2
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+|+++|+||++||++|+.+.|.+++++++++++ +.++.|++|.+. .+++.|+|
T Consensus 16 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---v~~~~v~~~~~~-----------------------~~~~~~~v 69 (105)
T 1nsw_A 16 GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVDENP-----------------------ETTSQFGI 69 (105)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTT---CEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEEECcCCH-----------------------HHHHHcCC
Confidence 4789999999999999999999999999988654 888888887654 58899999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
.++||++++ ++|+++.+
T Consensus 70 ~~~Pt~~~~-~~G~~~~~ 86 (105)
T 1nsw_A 70 MSIPTLILF-KGGRPVKQ 86 (105)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred ccccEEEEE-eCCeEEEE
Confidence 999999999 89998876
|
| >1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-13 Score=112.28 Aligned_cols=83 Identities=25% Similarity=0.467 Sum_probs=67.4
Q ss_pred ccCCCceecccC-CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccC
Q 011791 252 GKNGGKVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFG 330 (477)
Q Consensus 252 ~~~g~~~~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~ 330 (477)
.+++..+..... .+|+++|+||++||++|+.+.|.+.+++++++++ +.++.|++|.+.
T Consensus 9 ~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~~------------------ 67 (112)
T 1t00_A 9 HVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDK---IEIVKLNIDENP------------------ 67 (112)
T ss_dssp EECTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH------------------
T ss_pred ecchhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCC---eEEEEEEcCCCH------------------
Confidence 344444432222 4799999999999999999999999999998654 888888888654
Q ss_pred cchhHHHHHhcCCCCcceEEEECCCCcEEEe
Q 011791 331 DARKASLSRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 331 ~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
.+++.|+|.++||++++ ++|+++.+
T Consensus 68 -----~~~~~~~v~~~Pt~~~~-~~G~~~~~ 92 (112)
T 1t00_A 68 -----GTAAKYGVMSIPTLNVY-QGGEVAKT 92 (112)
T ss_dssp -----HHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred -----HHHHhCCCCcccEEEEE-eCCEEEEE
Confidence 58899999999999998 79999876
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=113.65 Aligned_cols=72 Identities=24% Similarity=0.558 Sum_probs=60.9
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+|+++|+||++||++|+.+.|.+.+++++++.. ++.++.|+++... .+++.|+|
T Consensus 20 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~-----------------------~~~~~~~v 74 (112)
T 3d6i_A 20 GDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNS--NVSFLSIDADENS-----------------------EISELFEI 74 (112)
T ss_dssp TTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGT--TSEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCC--CEEEEEEecccCH-----------------------HHHHHcCC
Confidence 3799999999999999999999999999887533 5888888887554 58899999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
.++||++++ ++|+++.+
T Consensus 75 ~~~Pt~~~~-~~G~~~~~ 91 (112)
T 3d6i_A 75 SAVPYFIII-HKGTILKE 91 (112)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred CcccEEEEE-ECCEEEEE
Confidence 999999999 79999887
|
| >4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.9e-14 Score=124.95 Aligned_cols=103 Identities=17% Similarity=0.344 Sum_probs=89.0
Q ss_pred CceecccC-CCCEE-EEEEeCCCChhhHh-HhHHHHHHHHHHHhcCCcE-EEEEEeCCCChhHHHHHHhcCCCc-eeccC
Q 011791 256 GKVPVSDL-AGKTI-LLYFSAHWCPPCRA-FLPKLIDAYKKIKERNESL-EVVFISSDRDQTSFDEFFKGMPWL-ALPFG 330 (477)
Q Consensus 256 ~~~~l~~~-~gk~v-ll~F~a~wC~~C~~-~~p~l~~l~~~~~~~~~~~-~iv~i~~d~~~~~~~~~~~~~~~~-~~p~~ 330 (477)
++++|+++ +||++ |++||+.|||.|.. ++|.|++.+++|+++ ++ +|++||+| +....++|.++.+.. ++|++
T Consensus 37 ~~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~--g~d~VigIS~D-~~~~~~~f~~~~~l~~~f~lL 113 (176)
T 4f82_A 37 NACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAA--GIDEIWCVSVN-DAFVMGAWGRDLHTAGKVRMM 113 (176)
T ss_dssp EEEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHT--TCCEEEEEESS-CHHHHHHHHHHTTCTTTSEEE
T ss_pred eEEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhC--CCCEEEEEeCC-CHHHHHHHHHHhCCCCCceEE
Confidence 67899997 99865 55677999999999 999999999999987 68 99999999 567888999888743 49999
Q ss_pred cchhHHHHHhcCCC------C-----cceEEEECCCCcEEEec
Q 011791 331 DARKASLSRKFKVS------G-----IPMLVAIGPSGRTITKE 362 (477)
Q Consensus 331 ~d~~~~l~~~~~v~------~-----~Pt~~lid~~G~iv~~~ 362 (477)
.|.+..+++.||+. + .|++++| ++|+|+...
T Consensus 114 sD~~~~va~ayGv~~~~~~~G~g~~s~R~tfII-~dG~I~~~~ 155 (176)
T 4f82_A 114 ADGSAAFTHALGLTQDLSARGMGIRSLRYAMVI-DGGVVKTLA 155 (176)
T ss_dssp ECTTCHHHHHHTCEEECGGGTCCEEECCEEEEE-ETTEEEEEE
T ss_pred EcCchHHHHHhCCCccccccCCCcccccEEEEE-cCCEEEEEE
Confidence 99999999999983 2 4889999 999999875
|
| >3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=120.49 Aligned_cols=69 Identities=20% Similarity=0.312 Sum_probs=61.1
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+|+|||+|||+||++|+.+.|.|.+++++++++ +.++.|++|... .+++.|+|
T Consensus 22 ~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~---~~~~~vd~d~~~-----------------------~l~~~~~v 75 (149)
T 3gix_A 22 AEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKM---AAIYLVDVDQTA-----------------------VYTQYFDI 75 (149)
T ss_dssp CSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTT---EEEEEEETTTCC-----------------------HHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCc---eEEEEEECCcCH-----------------------HHHHHcCC
Confidence 4899999999999999999999999999888654 888888887554 68999999
Q ss_pred CCcceEEEECCCCcEE
Q 011791 344 SGIPMLVAIGPSGRTI 359 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv 359 (477)
.++||++++ ++|+++
T Consensus 76 ~~~Pt~~~~-~~G~~v 90 (149)
T 3gix_A 76 SYIPSTVFF-FNGQHM 90 (149)
T ss_dssp CSSSEEEEE-ETTEEE
T ss_pred CccCeEEEE-ECCeEE
Confidence 999999966 789988
|
| >3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.48 E-value=4.2e-13 Score=113.10 Aligned_cols=85 Identities=13% Similarity=0.198 Sum_probs=67.5
Q ss_pred eeccCCCceecccC-CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhc--CCcEEEEEEeCCCChhHHHHHHhcCCCce
Q 011791 250 VVGKNGGKVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKER--NESLEVVFISSDRDQTSFDEFFKGMPWLA 326 (477)
Q Consensus 250 ~l~~~g~~~~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~--~~~~~iv~i~~d~~~~~~~~~~~~~~~~~ 326 (477)
++.+++.++..... .+++++|+|||+||++|+.+.|.+.++++++..+ ..++.++.|+++...
T Consensus 17 v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~-------------- 82 (127)
T 3h79_A 17 VVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYP-------------- 82 (127)
T ss_dssp CEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCH--------------
T ss_pred eEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccH--------------
Confidence 34666666654433 4899999999999999999999999999988642 245778777777543
Q ss_pred eccCcchhHHHHHhcCCCCcceEEEECCCCc
Q 011791 327 LPFGDARKASLSRKFKVSGIPMLVAIGPSGR 357 (477)
Q Consensus 327 ~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~ 357 (477)
.+++.|+|.++||+++++++++
T Consensus 83 ---------~l~~~~~v~~~Pt~~~~~~g~~ 104 (127)
T 3h79_A 83 ---------DVIERMRVSGFPTMRYYTRIDK 104 (127)
T ss_dssp ---------HHHHHTTCCSSSEEEEECSSCS
T ss_pred ---------hHHHhcCCccCCEEEEEeCCCC
Confidence 6899999999999999976555
|
| >3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-13 Score=110.83 Aligned_cols=71 Identities=24% Similarity=0.479 Sum_probs=63.9
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
++++++|+||++||++|+.+.|.+.+++++++++ +.++.|++|... .+++.|+|
T Consensus 18 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~-----------------------~~~~~~~v 71 (106)
T 3die_A 18 ESGVQLVDFWATACGPCKMIAPVLEELAADYEGK---ADILKLDVDENP-----------------------STAAKYEV 71 (106)
T ss_dssp CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---cEEEEEECCcCH-----------------------HHHHhCCC
Confidence 6899999999999999999999999999998764 888888888654 58899999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
+++||++++ ++|+++.+
T Consensus 72 ~~~Pt~~~~-~~G~~~~~ 88 (106)
T 3die_A 72 MSIPTLIVF-KDGQPVDK 88 (106)
T ss_dssp CSBSEEEEE-ETTEEEEE
T ss_pred cccCEEEEE-eCCeEEEE
Confidence 999999999 59998876
|
| >2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-13 Score=111.99 Aligned_cols=73 Identities=14% Similarity=0.394 Sum_probs=61.0
Q ss_pred cCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhc
Q 011791 262 DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 341 (477)
Q Consensus 262 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 341 (477)
+.++|+++|+||++||++|+.+.|.|.+++++++ ++.++.|+++.. ...+++.|
T Consensus 21 ~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~----------------------~~~~~~~~ 74 (111)
T 2pu9_C 21 AAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL----DVIFLKLDCNQE----------------------NKTLAKEL 74 (111)
T ss_dssp TCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEECSST----------------------THHHHHHH
T ss_pred hcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCC----CeEEEEEecCcc----------------------hHHHHHHc
Confidence 3468999999999999999999999999988875 377888887732 23689999
Q ss_pred CCCCcceEEEECCCCcEEEe
Q 011791 342 KVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 342 ~v~~~Pt~~lid~~G~iv~~ 361 (477)
+|.++||++++ ++|+++.+
T Consensus 75 ~v~~~Pt~~~~-~~G~~~~~ 93 (111)
T 2pu9_C 75 GIRVVPTFKIL-KENSVVGE 93 (111)
T ss_dssp CCSBSSEEEEE-SSSSEEEE
T ss_pred CCCeeeEEEEE-eCCcEEEE
Confidence 99999996665 89999876
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-13 Score=111.15 Aligned_cols=70 Identities=14% Similarity=0.247 Sum_probs=61.7
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+|+++|+||++||++|+.+.|.+.+++++++ ++.++.|++|... .+++.|+|
T Consensus 20 ~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~----~~~~~~vd~~~~~-----------------------~~~~~~~v 72 (107)
T 1gh2_A 20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP----QAVFLEVDVHQCQ-----------------------GTAATNNI 72 (107)
T ss_dssp TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTSH-----------------------HHHHHTTC
T ss_pred CCCEEEEEEECCCChhhHHHHHHHHHHHHHCC----CcEEEEEECccCH-----------------------HHHHhcCC
Confidence 48999999999999999999999999998873 4888888887553 58899999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
.++||++++ ++|+++.+
T Consensus 73 ~~~Pt~~~~-~~G~~~~~ 89 (107)
T 1gh2_A 73 SATPTFQFF-RNKVRIDQ 89 (107)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred CcccEEEEE-ECCeEEEE
Confidence 999999999 79998876
|
| >3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A | Back alignment and structure |
|---|
Probab=99.47 E-value=7.5e-14 Score=121.28 Aligned_cols=104 Identities=8% Similarity=0.100 Sum_probs=76.9
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHH--HHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhc
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAY--KKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 341 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~--~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 341 (477)
.||+|||+|||+||++|+.+.|.+.+.. .++.+ ..++.|++|.+.. .+...|
T Consensus 43 ~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~----~~fv~V~vD~e~~----------------------~~~~~~ 96 (151)
T 3ph9_A 43 SKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQ----NKFIMLNLMHETT----------------------DKNLSP 96 (151)
T ss_dssp HTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHH----HTCEEEEESSCCS----------------------CGGGCT
T ss_pred cCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhh----cCeEEEEecCCch----------------------hhHhhc
Confidence 4899999999999999999999988642 22222 2267777764321 235678
Q ss_pred CCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCCc
Q 011791 342 KVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWP 397 (477)
Q Consensus 342 ~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 397 (477)
++.++||++|++++|+++.+. +..++.+.+.+...+++++++.+++.++...
T Consensus 97 ~v~~~PT~~f~~~~G~~v~~~----~G~~~~~~~~~~~~~~~~ll~~~~~al~~~~ 148 (151)
T 3ph9_A 97 DGQYVPRIMFVDPSLTVRADI----AGRYSNRLYTYEPRDLPLLIENMKKALRLIQ 148 (151)
T ss_dssp TCCCSSEEEEECTTSCBCTTC----CCSCTTSTTCCCGGGHHHHHHHHHHHHSCCC
T ss_pred CCCCCCEEEEECCCCCEEEEE----eCCcCCcccccchhhHHHHHHHHHHHHHHHh
Confidence 999999999999999998763 2234445566778888999999988876543
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-13 Score=114.59 Aligned_cols=70 Identities=23% Similarity=0.575 Sum_probs=61.9
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
++|+++|+||++||++|+.+.|.|.+++++++ ++.++.|++|... .+++.|+|
T Consensus 37 ~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~----~v~~~~vd~d~~~-----------------------~l~~~~~v 89 (124)
T 1xfl_A 37 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLP----NVLFLKVDTDELK-----------------------SVASDWAI 89 (124)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS----SEEEEEEETTTSH-----------------------HHHHHTTC
T ss_pred cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC----CcEEEEEECccCH-----------------------HHHHHcCC
Confidence 58999999999999999999999999988874 4888888887543 68999999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
.++||++++ ++|+++.+
T Consensus 90 ~~~Pt~~~~-~~G~~~~~ 106 (124)
T 1xfl_A 90 QAMPTFMFL-KEGKILDK 106 (124)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred CccCEEEEE-ECCEEEEE
Confidence 999999988 89999876
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=112.30 Aligned_cols=70 Identities=19% Similarity=0.330 Sum_probs=54.4
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+++++|+|||+||++|+.+.|.+.+++++++ ++.++.|++|... .+++.|+|
T Consensus 17 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~vd~~~~~-----------------------~l~~~~~v 69 (105)
T 4euy_A 17 EQQLVLLFIKTENCGVCDVMLRKVNYVLENYN----YVEKIEILLQDMQ-----------------------EIAGRYAV 69 (105)
T ss_dssp CSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT----TEEEEEEEECCC--------------------------------
T ss_pred cCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC----CceEEEEECCCCH-----------------------HHHHhcCC
Confidence 48999999999999999999999999988873 4888888887654 57899999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
.++||++++ ++|+++.+
T Consensus 70 ~~~Pt~~~~-~~G~~~~~ 86 (105)
T 4euy_A 70 FTGPTVLLF-YNGKEILR 86 (105)
T ss_dssp CCCCEEEEE-ETTEEEEE
T ss_pred CCCCEEEEE-eCCeEEEE
Confidence 999999999 59999876
|
| >1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.9e-13 Score=109.34 Aligned_cols=71 Identities=23% Similarity=0.574 Sum_probs=62.8
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+|+++|+||++||++|+.+.|.+.+++++++++ +.++.|++|.+. .+++.|+|
T Consensus 18 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~~-----------------------~~~~~~~v 71 (107)
T 1dby_A 18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK---LKCVKLNTDESP-----------------------NVASEYGI 71 (107)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-----------------------HHHHHHTC
T ss_pred CCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCc---eEEEEEECCCCH-----------------------HHHHHCCC
Confidence 3789999999999999999999999999998754 888888887554 58899999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
.++||++++ ++|+++.+
T Consensus 72 ~~~Pt~~~~-~~G~~~~~ 88 (107)
T 1dby_A 72 RSIPTIMVF-KGGKKCET 88 (107)
T ss_dssp CSSCEEEEE-SSSSEEEE
T ss_pred CcCCEEEEE-eCCEEEEE
Confidence 999999999 79999876
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.7e-14 Score=125.05 Aligned_cols=102 Identities=17% Similarity=0.225 Sum_probs=65.5
Q ss_pred ceecccCCCCEEEEEEeCCCChhhHhHhHHH---HHHHHHHHhcCCcEEEEEEeCCCChhHHH--HHHhcCCCceeccCc
Q 011791 257 KVPVSDLAGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFD--EFFKGMPWLALPFGD 331 (477)
Q Consensus 257 ~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~i~~d~~~~~~~--~~~~~~~~~~~p~~~ 331 (477)
.+.++..+||+|||+|||+||++|+.+.+.+ .++.+.++++ +.++.|++|...+... .+........+....
T Consensus 39 ~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~---~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 115 (172)
T 3f9u_A 39 GMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINND---YVLITLYVDNKTPLTEPVKIMENGTERTLRTVG 115 (172)
T ss_dssp HHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHH---CEEEEEETTCCCEEEEEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCC---EEEEEEecCcccccchhhhhhhcchhhhhhhhh
Confidence 3444556799999999999999999974444 5555555543 8899999886531000 000000111111122
Q ss_pred chhHHH-HHhcCCCCcceEEEECCCCcEEEe
Q 011791 332 ARKASL-SRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 332 d~~~~l-~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
+....+ .+.|+|.++||++|||++|+++.+
T Consensus 116 ~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~ 146 (172)
T 3f9u_A 116 DKWSYLQRVKFGANAQPFYVLIDNEGNPLNK 146 (172)
T ss_dssp HHHHHHHHHHHSCCCSSEEEEECTTSCBSSC
T ss_pred hhhhHHHHHHcCCCCcceEEEECCCCCEEee
Confidence 222223 588999999999999999999876
|
| >1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.3e-13 Score=111.70 Aligned_cols=70 Identities=17% Similarity=0.400 Sum_probs=61.8
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+|+++|+||++||++|+.+.|.|.++++++++ ++.++.|++|... .+++.|+|.
T Consensus 24 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~~-----------------------~~~~~~~v~ 77 (112)
T 1ep7_A 24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYAG---KVIFLKVDVDAVA-----------------------AVAEAAGIT 77 (112)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TSEEEEEETTTTH-----------------------HHHHHHTCC
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC---CeEEEEEECCchH-----------------------HHHHHcCCC
Confidence 78999999999999999999999999998864 4888888887543 688999999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++||++++ ++|+++.+
T Consensus 78 ~~Pt~~~~-~~G~~~~~ 93 (112)
T 1ep7_A 78 AMPTFHVY-KDGVKADD 93 (112)
T ss_dssp BSSEEEEE-ETTEEEEE
T ss_pred cccEEEEE-ECCeEEEE
Confidence 99998888 79999876
|
| >2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-13 Score=115.20 Aligned_cols=84 Identities=21% Similarity=0.389 Sum_probs=66.5
Q ss_pred ccCCCceeccc-CCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccC
Q 011791 252 GKNGGKVPVSD-LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFG 330 (477)
Q Consensus 252 ~~~g~~~~l~~-~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~ 330 (477)
.++...+.... -.+|+++|+||++||++|+.+.|.+.+++++++++ +.++.|++|...
T Consensus 21 ~l~~~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~------------------ 79 (130)
T 2dml_A 21 ELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDV---VKVGAVNADKHQ------------------ 79 (130)
T ss_dssp ECCTTTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTT---SEEEEEETTTCH------------------
T ss_pred ECCHHHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCc---eEEEEEeCCCCH------------------
Confidence 44444443322 24789999999999999999999999999998754 778888877553
Q ss_pred cchhHHHHHhcCCCCcceEEEECCCCcEEEe
Q 011791 331 DARKASLSRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 331 ~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
.+++.|+|.++||+++++++|+++.+
T Consensus 80 -----~l~~~~~v~~~Pt~~~~~~~~~~~~~ 105 (130)
T 2dml_A 80 -----SLGGQYGVQGFPTIKIFGANKNKPED 105 (130)
T ss_dssp -----HHHHHHTCCSSSEEEEESSCTTSCEE
T ss_pred -----HHHHHcCCCccCEEEEEeCCCCeEEE
Confidence 68999999999999999888874433
|
| >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.3e-13 Score=118.14 Aligned_cols=71 Identities=23% Similarity=0.593 Sum_probs=63.6
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.++++||+||++||++|+.+.|.|++++++++++ +.++.|++|... .+++.|+|
T Consensus 63 ~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~---v~~~~vd~~~~~-----------------------~l~~~~~i 116 (155)
T 2ppt_A 63 DDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQ---VRLAKIDTQAHP-----------------------AVAGRHRI 116 (155)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTST-----------------------HHHHHTTC
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCC---EEEEEEeCCccH-----------------------HHHHHcCC
Confidence 5899999999999999999999999999999754 888888887553 58999999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
+++||++++ ++|+++.+
T Consensus 117 ~~~Pt~~~~-~~G~~~~~ 133 (155)
T 2ppt_A 117 QGIPAFILF-HKGRELAR 133 (155)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred CcCCEEEEE-eCCeEEEE
Confidence 999999999 79999876
|
| >2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.5e-13 Score=108.28 Aligned_cols=83 Identities=24% Similarity=0.450 Sum_probs=68.4
Q ss_pred ccCCCceeccc-CCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccC
Q 011791 252 GKNGGKVPVSD-LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFG 330 (477)
Q Consensus 252 ~~~g~~~~l~~-~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~ 330 (477)
.++++.+.... -.+++++|+||++||++|+.+.|.+.++++++++ ++.++.|+++...
T Consensus 6 ~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~------------------ 64 (107)
T 2i4a_A 6 AVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG---KVTVAKVNIDDNP------------------ 64 (107)
T ss_dssp ECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT---SEEEEEEETTTCC------------------
T ss_pred ecchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCC---cEEEEEEECCCCH------------------
Confidence 44455554222 2579999999999999999999999999999875 3888888887553
Q ss_pred cchhHHHHHhcCCCCcceEEEECCCCcEEEe
Q 011791 331 DARKASLSRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 331 ~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
.+++.|+|.++|+++++ ++|+++.+
T Consensus 65 -----~~~~~~~v~~~Pt~~~~-~~G~~~~~ 89 (107)
T 2i4a_A 65 -----ETPNAYQVRSIPTLMLV-RDGKVIDK 89 (107)
T ss_dssp -----HHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred -----HHHHhcCCCccCEEEEE-eCCEEEEE
Confidence 58899999999999999 89999876
|
| >1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.4e-13 Score=111.80 Aligned_cols=86 Identities=16% Similarity=0.379 Sum_probs=67.3
Q ss_pred ccCCCceeccc-CCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhc-CCcEEEEEEeCCCChhHHHHHHhcCCCceecc
Q 011791 252 GKNGGKVPVSD-LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKER-NESLEVVFISSDRDQTSFDEFFKGMPWLALPF 329 (477)
Q Consensus 252 ~~~g~~~~l~~-~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~-~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~ 329 (477)
.++...+.... -.++++||+||++||++|+.+.|.+.++++++++. ..++.++.|+++...
T Consensus 11 ~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----------------- 73 (133)
T 1x5d_A 11 ELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQ----------------- 73 (133)
T ss_dssp ECCTTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCC-----------------
T ss_pred EcCHhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCH-----------------
Confidence 45555554322 24799999999999999999999999999999731 124888888777543
Q ss_pred CcchhHHHHHhcCCCCcceEEEECCCCcEEEe
Q 011791 330 GDARKASLSRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 330 ~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
.+++.|+|.++||++++++ |+++.+
T Consensus 74 ------~l~~~~~v~~~Pt~~~~~~-g~~~~~ 98 (133)
T 1x5d_A 74 ------VLASRYGIRGFPTIKIFQK-GESPVD 98 (133)
T ss_dssp ------HHHHHHTCCSSSEEEEEET-TEEEEE
T ss_pred ------HHHHhCCCCeeCeEEEEeC-CCceEE
Confidence 6899999999999999976 887665
|
| >3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.5e-14 Score=118.03 Aligned_cols=99 Identities=14% Similarity=0.196 Sum_probs=72.0
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+|+++|+||++||++|+.+.|.+.+++++++++ +.++.|+++... .+++.|+|
T Consensus 20 ~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~v 73 (122)
T 3aps_A 20 GKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGK---VRAGKVDCQAYP-----------------------QTCQKAGI 73 (122)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEeCcCCH-----------------------HHHHHcCC
Confidence 4789999999999999999999999999998753 888888887554 58899999
Q ss_pred CCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCCchh
Q 011791 344 SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPEN 399 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 399 (477)
.++||+++++++|++... .|...+..+. ++|.+.++++++..+..
T Consensus 74 ~~~Pt~~~~~~~~~~~~~--------~g~~~~~~~~---~~l~~~l~~~l~~~~~~ 118 (122)
T 3aps_A 74 KAYPSVKLYQYERAKKSI--------WEEQINSRDA---KTIAALIYGKLETLQSQ 118 (122)
T ss_dssp CSSSEEEEEEEEGGGTEE--------EEEEECCSCH---HHHHHHHHHHHHCC---
T ss_pred CccceEEEEeCCCcccee--------eccccCcCCH---HHHHHHHHHHHHhhhhh
Confidence 999999999776663222 2211011233 55667777776655443
|
| >1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A | Back alignment and structure |
|---|
Probab=99.46 E-value=4e-13 Score=111.92 Aligned_cols=71 Identities=24% Similarity=0.585 Sum_probs=62.9
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+|++||+||++||++|+.+.|.|.+++++++++ +.++.|++|... .+++.|+|
T Consensus 30 ~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~---v~~~~vd~d~~~-----------------------~l~~~~~v 83 (119)
T 1w4v_A 30 SETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGK---VVMAKVDIDDHT-----------------------DLAIEYEV 83 (119)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTS---SEEEEEETTTTH-----------------------HHHHHTTC
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEeCCCCH-----------------------HHHHHcCC
Confidence 4799999999999999999999999999988653 888888887543 58899999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
.++|+++++ ++|+++.+
T Consensus 84 ~~~Pt~~~~-~~G~~~~~ 100 (119)
T 1w4v_A 84 SAVPTVLAM-KNGDVVDK 100 (119)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred CcccEEEEE-eCCcEEEE
Confidence 999999999 89999876
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-13 Score=117.93 Aligned_cols=93 Identities=18% Similarity=0.398 Sum_probs=68.5
Q ss_pred ecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHH
Q 011791 259 PVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLS 338 (477)
Q Consensus 259 ~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~ 338 (477)
.+++.+||++||+|||+||++|+.+.|.|.++++++ ++.++.|++|... .++
T Consensus 34 ~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~-----~v~~~~vd~~~~~-----------------------~l~ 85 (133)
T 3cxg_A 34 VFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY-----YVTLVDIDVDIHP-----------------------KLN 85 (133)
T ss_dssp HHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE-----ECEEEEEETTTCH-----------------------HHH
T ss_pred HHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc-----CEEEEEEeccchH-----------------------HHH
Confidence 345567899999999999999999999998876655 2666666666433 688
Q ss_pred HhcCCCCcceEEEE-CCCCc--EEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHc
Q 011791 339 RKFKVSGIPMLVAI-GPSGR--TITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAK 394 (477)
Q Consensus 339 ~~~~v~~~Pt~~li-d~~G~--iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 394 (477)
+.|+|.++||++++ +++|+ ++.+ ..|. +. ++|.+.+++++.
T Consensus 86 ~~~~v~~~Pt~~~~~~~~g~g~~~~~-------~~G~-----~~---~~l~~~l~~~l~ 129 (133)
T 3cxg_A 86 DQHNIKALPTFEFYFNLNNEWVLVHT-------VEGA-----NQ---NDIEKAFQKYCL 129 (133)
T ss_dssp HHTTCCSSSEEEEEEEETTEEEEEEE-------EESC-----CH---HHHHHHHHHHSE
T ss_pred HhcCCCCCCEEEEEEecCCCeEEEEE-------EcCC-----CH---HHHHHHHHHHHH
Confidence 99999999999999 34666 7766 2331 22 556677776654
|
| >1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=4.4e-13 Score=110.36 Aligned_cols=83 Identities=27% Similarity=0.511 Sum_probs=68.6
Q ss_pred ccCCCceeccc-CCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccC
Q 011791 252 GKNGGKVPVSD-LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFG 330 (477)
Q Consensus 252 ~~~g~~~~l~~-~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~ 330 (477)
.++++.+.... -.+++++|+||++||++|+.+.|.+.+++++++++ +.++.|++|...
T Consensus 11 ~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---v~~~~v~~~~~~------------------ 69 (115)
T 1thx_A 11 TITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR---LKVVKLEIDPNP------------------ 69 (115)
T ss_dssp ECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEESTTCH------------------
T ss_pred EeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCc---EEEEEEEcCCCH------------------
Confidence 44445544322 25899999999999999999999999999998754 889989888654
Q ss_pred cchhHHHHHhcCCCCcceEEEECCCCcEEEe
Q 011791 331 DARKASLSRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 331 ~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
.+++.|+|.++|+++++ ++|+++.+
T Consensus 70 -----~~~~~~~v~~~Pt~~~~-~~G~~~~~ 94 (115)
T 1thx_A 70 -----TTVKKYKVEGVPALRLV-KGEQILDS 94 (115)
T ss_dssp -----HHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred -----HHHHHcCCCceeEEEEE-cCCEEEEE
Confidence 58899999999999999 89999876
|
| >3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.45 E-value=5.4e-13 Score=109.19 Aligned_cols=71 Identities=23% Similarity=0.498 Sum_probs=63.1
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+++++|+||++||++|+.+.|.+.+++++++++ +.++.|++|... .+++.|+|
T Consensus 21 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---v~~~~vd~~~~~-----------------------~l~~~~~v 74 (111)
T 3gnj_A 21 EGKACLVMFSRKNCHVCQKVTPVLEELRLNYEES---FGFYYVDVEEEK-----------------------TLFQRFSL 74 (111)
T ss_dssp SCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred cCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCcCh-----------------------hHHHhcCC
Confidence 4799999999999999999999999999998754 888888888654 68999999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
.++||++++ ++|+++.+
T Consensus 75 ~~~Pt~~~~-~~g~~~~~ 91 (111)
T 3gnj_A 75 KGVPQILYF-KDGEYKGK 91 (111)
T ss_dssp CSSCEEEEE-ETTEEEEE
T ss_pred CcCCEEEEE-ECCEEEEE
Confidence 999999999 78998876
|
| >1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A | Back alignment and structure |
|---|
Probab=99.45 E-value=7.4e-14 Score=123.59 Aligned_cols=76 Identities=21% Similarity=0.332 Sum_probs=63.0
Q ss_pred cccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHH
Q 011791 260 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 339 (477)
Q Consensus 260 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~ 339 (477)
+++++||+++|+|||+|||+|+.+.|.|++++++++ ++.++.|++|... ++.+
T Consensus 49 l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~----~v~~~~v~~d~~~-----------------------~~~~ 101 (167)
T 1z6n_A 49 LQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP----NIELAIISKGRAE-----------------------DDLR 101 (167)
T ss_dssp HHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT----TEEEEEECHHHHH-----------------------HHTT
T ss_pred HHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC----CcEEEEEECCCCH-----------------------HHHH
Confidence 456779999999999999999999999999988763 4888888776432 4556
Q ss_pred hcC---CCCcceEEEECCCCcEEEec
Q 011791 340 KFK---VSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 340 ~~~---v~~~Pt~~lid~~G~iv~~~ 362 (477)
.|. +.++||+++++++|+++.+.
T Consensus 102 ~~~~~~v~~iPt~i~~~~~G~~~~~~ 127 (167)
T 1z6n_A 102 QRLALERIAIPLVLVLDEEFNLLGRF 127 (167)
T ss_dssp TTTTCSSCCSSEEEEECTTCCEEEEE
T ss_pred HHHHcCCCCcCeEEEECCCCCEEEEE
Confidence 665 99999999999989998764
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... | Back alignment and structure |
|---|
Probab=99.45 E-value=2.7e-13 Score=109.80 Aligned_cols=70 Identities=21% Similarity=0.467 Sum_probs=61.7
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
++|+++|+||++||++|+.+.|.+.+++++++ ++.++.|++|... .+++.|+|
T Consensus 19 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~vd~~~~~-----------------------~~~~~~~v 71 (105)
T 3m9j_A 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS----NVIFLEVDVDDCQ-----------------------DVASESEV 71 (105)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHST----TSEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHHcc----CeEEEEEEhhhhH-----------------------HHHHHcCC
Confidence 58999999999999999999999999988874 3778888877554 58899999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
.++||++++ ++|+++.+
T Consensus 72 ~~~Pt~~~~-~~g~~~~~ 88 (105)
T 3m9j_A 72 KSMPTFQFF-KKGQKVGE 88 (105)
T ss_dssp CBSSEEEEE-ETTEEEEE
T ss_pred CcCcEEEEE-ECCeEEEE
Confidence 999999999 78998876
|
| >1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A | Back alignment and structure |
|---|
Probab=99.45 E-value=5.8e-13 Score=114.78 Aligned_cols=72 Identities=11% Similarity=0.270 Sum_probs=62.8
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+++++|+|||+||++|+.+.|.|++++++++++ +.++.|++|... .+++.|+|
T Consensus 22 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~d~~~-----------------------~~~~~~~i 75 (142)
T 1qgv_A 22 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF---AVIYLVDITEVP-----------------------DFNKMYEL 75 (142)
T ss_dssp SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTCC-----------------------TTTTSSCS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEEccccCH-----------------------HHHHHcCC
Confidence 3899999999999999999999999999998654 888888888554 47889999
Q ss_pred CCcceEEEECCCCcEEEec
Q 011791 344 SGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~~ 362 (477)
+++||++++ ++|+++...
T Consensus 76 ~~~Pt~~~~-~~G~~v~~~ 93 (142)
T 1qgv_A 76 YDPCTVMFF-FRNKHIMID 93 (142)
T ss_dssp CSSCEEEEE-ETTEEEEEE
T ss_pred CCCCEEEEE-ECCcEEEEe
Confidence 999999999 689888753
|
| >3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.45 E-value=3e-13 Score=116.20 Aligned_cols=71 Identities=21% Similarity=0.340 Sum_probs=63.5
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.++++||+||++||++|+.+.|.|.+++++++++ +.++.|++|... .+++.|+|
T Consensus 23 ~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~~-----------------------~l~~~~~v 76 (140)
T 3hz4_A 23 SKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSS---AVFGRINIATNP-----------------------WTAEKYGV 76 (140)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEETTTCH-----------------------HHHHHHTC
T ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCcCH-----------------------hHHHHCCC
Confidence 3799999999999999999999999999999764 888888887654 68999999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
.++||++++ ++|+++.+
T Consensus 77 ~~~Pt~~~~-~~G~~~~~ 93 (140)
T 3hz4_A 77 QGTPTFKFF-CHGRPVWE 93 (140)
T ss_dssp CEESEEEEE-ETTEEEEE
T ss_pred CcCCEEEEE-eCCcEEEE
Confidence 999999999 79998876
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A | Back alignment and structure |
|---|
Probab=99.44 E-value=6.9e-15 Score=130.18 Aligned_cols=111 Identities=15% Similarity=0.352 Sum_probs=74.9
Q ss_pred CceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhH
Q 011791 256 GKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKA 335 (477)
Q Consensus 256 ~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 335 (477)
+.+.....+||+|||+|||+||++|+.+.|.|.++.+.++.. +.++.|++|.+.+
T Consensus 37 ~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~---~~~~~v~~d~~~~---------------------- 91 (164)
T 1sen_A 37 DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELS---HNFVMVNLEDEEE---------------------- 91 (164)
T ss_dssp HHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHH---TTSEEEEEEGGGS----------------------
T ss_pred HHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcC---CeEEEEEecCCch----------------------
Confidence 445555567999999999999999999999999987665543 5678888775431
Q ss_pred HHHHhcCC--CCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcC
Q 011791 336 SLSRKFKV--SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKG 395 (477)
Q Consensus 336 ~l~~~~~v--~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 395 (477)
.+...|++ .++||++++|++|+++.+..+ ..+...+.+.....++|++.|++++..
T Consensus 92 ~~~~~~~~~~~~~Pt~~~~d~~G~~~~~~~G----~~~~~~~~~~~~~~~~l~~~l~~~l~~ 149 (164)
T 1sen_A 92 PKDEDFSPDGGYIPRILFLDPSGKVHPEIIN----ENGNPSYKYFYVSAEQVVQGMKEAQER 149 (164)
T ss_dssp CSCGGGCTTCSCSSEEEEECTTSCBCTTCCC----TTSCTTSTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCCcCCeEEEECCCCCEEEEEeC----CCCccchhcccCCHHHHHHHHHHHHHh
Confidence 13556777 679999999999999865211 111111111123346666667666544
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A | Back alignment and structure |
|---|
Probab=99.44 E-value=5.3e-13 Score=108.14 Aligned_cols=71 Identities=25% Similarity=0.646 Sum_probs=62.4
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
++++++|+||++||++|+.+.|.+.+++++++. ++.++.|++|... .+++.|+|
T Consensus 19 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~v~~~~~~-----------------------~~~~~~~v 72 (106)
T 1xwb_A 19 SGKLVVLDFFATWCGPCKMISPKLVELSTQFAD---NVVVLKVDVDECE-----------------------DIAMEYNI 72 (106)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TEEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCC---CeEEEEEeccchH-----------------------HHHHHcCC
Confidence 589999999999999999999999999998864 4888888887543 58899999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
.++||++++ ++|+++.+
T Consensus 73 ~~~Pt~~~~-~~G~~~~~ 89 (106)
T 1xwb_A 73 SSMPTFVFL-KNGVKVEE 89 (106)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred CcccEEEEE-cCCcEEEE
Confidence 999998888 78998876
|
| >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A | Back alignment and structure |
|---|
Probab=99.44 E-value=4.1e-13 Score=117.23 Aligned_cols=89 Identities=19% Similarity=0.400 Sum_probs=72.4
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
++|++||+||++||++|+.+.|.|.+++++++ ++.++.|++|... .+++.|+|
T Consensus 31 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~~~~~-----------------------~l~~~~~v 83 (153)
T 2wz9_A 31 AKSLLVVHFWAPWAPQCAQMNEVMAELAKELP----QVSFVKLEAEGVP-----------------------EVSEKYEI 83 (153)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTSH-----------------------HHHHHTTC
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC----CeEEEEEECCCCH-----------------------HHHHHcCC
Confidence 48999999999999999999999999988863 4888888887543 58899999
Q ss_pred CCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcC
Q 011791 344 SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKG 395 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 395 (477)
.++||+++++ +|+++.+. .|. .. ++|.+.+++++..
T Consensus 84 ~~~Pt~~~~~-~G~~~~~~-------~G~-----~~---~~l~~~i~~~l~~ 119 (153)
T 2wz9_A 84 SSVPTFLFFK-NSQKIDRL-------DGA-----HA---PELTKKVQRHASS 119 (153)
T ss_dssp CSSSEEEEEE-TTEEEEEE-------ESS-----CH---HHHHHHHHHHSCT
T ss_pred CCCCEEEEEE-CCEEEEEE-------eCC-----CH---HHHHHHHHHHhcc
Confidence 9999999997 99998763 231 22 4577777777654
|
| >3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A | Back alignment and structure |
|---|
Probab=99.44 E-value=4e-13 Score=109.88 Aligned_cols=73 Identities=19% Similarity=0.470 Sum_probs=62.6
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|+||++||++|+.+.|.+.++++++.....++.++.|+++... .+++.|+|.
T Consensus 21 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-----------------------~l~~~~~v~ 77 (111)
T 3uvt_A 21 EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAER-----------------------NICSKYSVR 77 (111)
T ss_dssp SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCH-----------------------HHHHHTTCC
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccH-----------------------hHHHhcCCC
Confidence 789999999999999999999999998887644346888888877554 589999999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++||++++ ++|+++.+
T Consensus 78 ~~Pt~~~~-~~g~~~~~ 93 (111)
T 3uvt_A 78 GYPTLLLF-RGGKKVSE 93 (111)
T ss_dssp SSSEEEEE-ETTEEEEE
T ss_pred cccEEEEE-eCCcEEEe
Confidence 99999999 78988876
|
| >1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=4.5e-13 Score=112.79 Aligned_cols=70 Identities=17% Similarity=0.459 Sum_probs=61.9
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.++++||+||++||++|+.+.|.|.+++++++ ++.++.|++|... .+++.|+|
T Consensus 36 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~d~~~-----------------------~l~~~~~v 88 (125)
T 1r26_A 36 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP----TVKFAKVDADNNS-----------------------EIVSKCRV 88 (125)
T ss_dssp SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT----TSEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC----CCEEEEEECCCCH-----------------------HHHHHcCC
Confidence 48999999999999999999999999988873 4888888887554 58999999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
.++||++++ ++|+++.+
T Consensus 89 ~~~Pt~~i~-~~G~~~~~ 105 (125)
T 1r26_A 89 LQLPTFIIA-RSGKMLGH 105 (125)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred CcccEEEEE-eCCeEEEE
Confidence 999999988 89999876
|
| >1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C | Back alignment and structure |
|---|
Probab=99.43 E-value=8.5e-13 Score=106.75 Aligned_cols=82 Identities=18% Similarity=0.422 Sum_probs=66.6
Q ss_pred cCCCceecccC-CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCc
Q 011791 253 KNGGKVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGD 331 (477)
Q Consensus 253 ~~g~~~~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~ 331 (477)
++++.+..... .+++++|+||++||++|+.+.|.+.+++++++++ +.++.++++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~------------------- 62 (105)
T 1fb6_A 5 VNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLNTDEAP------------------- 62 (105)
T ss_dssp CCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-------------------
T ss_pred chhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCc---eEEEEEcCcchH-------------------
Confidence 34444433222 4789999999999999999999999999988754 888888887554
Q ss_pred chhHHHHHhcCCCCcceEEEECCCCcEEEe
Q 011791 332 ARKASLSRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 332 d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
.+++.|+|.++||++++ ++|+++.+
T Consensus 63 ----~~~~~~~v~~~Pt~~~~-~~g~~~~~ 87 (105)
T 1fb6_A 63 ----GIATQYNIRSIPTVLFF-KNGERKES 87 (105)
T ss_dssp ----HHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred ----HHHHhCCCCcccEEEEE-eCCeEEEE
Confidence 58899999999999988 79999876
|
| >3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A | Back alignment and structure |
|---|
Probab=99.43 E-value=3e-13 Score=116.08 Aligned_cols=84 Identities=21% Similarity=0.289 Sum_probs=74.9
Q ss_pred eecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccC
Q 011791 90 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPF 169 (477)
Q Consensus 90 l~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~ 169 (477)
+.+.+|..+.++.++||+++|+||++||++|+.+.|.|.++++.++++ +.++.|.+|.+.
T Consensus 36 l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~----------------- 95 (141)
T 3hxs_A 36 IADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGK---IYIYKVNVDKEP----------------- 95 (141)
T ss_dssp TCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-----------------
T ss_pred hhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCc---eEEEEEECCCCH-----------------
Confidence 457788999999999999999999999999999999999999999864 788888887553
Q ss_pred CchhHHHHHHHcCcccCCeEEEECCCCCcc
Q 011791 170 KDKSREKLARYFELSTLPTLVIIGPDGKTL 199 (477)
Q Consensus 170 ~~~~~~~l~~~~~v~~~P~~~lid~~G~i~ 199 (477)
.+++.|+|.++|++++++++|+++
T Consensus 96 ------~~~~~~~v~~~Pt~~~~~~~g~~~ 119 (141)
T 3hxs_A 96 ------ELARDFGIQSIPTIWFVPMKGEPQ 119 (141)
T ss_dssp ------HHHHHTTCCSSSEEEEECSSSCCE
T ss_pred ------HHHHHcCCCCcCEEEEEeCCCCEE
Confidence 478899999999999999999876
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-13 Score=112.22 Aligned_cols=72 Identities=25% Similarity=0.562 Sum_probs=61.5
Q ss_pred ccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHh
Q 011791 261 SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 340 (477)
Q Consensus 261 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 340 (477)
++.++|+++|+||++||++|+.+.|.+.++++++ ++.++.|++|... .+++.
T Consensus 29 ~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~-----~~~~~~vd~~~~~-----------------------~~~~~ 80 (117)
T 2xc2_A 29 EQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY-----DAIFVKVDVDKLE-----------------------ETARK 80 (117)
T ss_dssp HHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS-----SSEEEEEETTTSH-----------------------HHHHH
T ss_pred HhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc-----CcEEEEEECCccH-----------------------HHHHH
Confidence 3346899999999999999999999999988776 3778888877543 68899
Q ss_pred cCCCCcceEEEECCCCcEEEe
Q 011791 341 FKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 341 ~~v~~~Pt~~lid~~G~iv~~ 361 (477)
|+|.++||++++ ++|+++.+
T Consensus 81 ~~v~~~Pt~~~~-~~G~~~~~ 100 (117)
T 2xc2_A 81 YNISAMPTFIAI-KNGEKVGD 100 (117)
T ss_dssp TTCCSSSEEEEE-ETTEEEEE
T ss_pred cCCCccceEEEE-eCCcEEEE
Confidence 999999999888 79999876
|
| >2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A | Back alignment and structure |
|---|
Probab=99.43 E-value=6.7e-13 Score=106.89 Aligned_cols=70 Identities=17% Similarity=0.478 Sum_probs=61.6
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
++++++|+||++||++|+.+.|.+.+++++++ ++.++.+++|... .+++.|+|
T Consensus 15 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~v~~~~~~-----------------------~~~~~~~v 67 (104)
T 2e0q_A 15 SHEIAVVDFWAEWCAPCLILAPIIEELAEDYP----QVGFGKLNSDENP-----------------------DIAARYGV 67 (104)
T ss_dssp HSSEEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHHcC----CceEEEEECCCCH-----------------------HHHHhCCc
Confidence 48999999999999999999999999888875 2788888887554 58899999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
.++|+++++ ++|+++.+
T Consensus 68 ~~~Pt~~~~-~~g~~~~~ 84 (104)
T 2e0q_A 68 MSLPTVIFF-KDGEPVDE 84 (104)
T ss_dssp CSSCEEEEE-ETTEEEEE
T ss_pred cccCEEEEE-ECCeEhhh
Confidence 999999999 89999876
|
| >2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.7e-13 Score=111.43 Aligned_cols=71 Identities=23% Similarity=0.428 Sum_probs=61.8
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.++++||+||++||++|+.+.|.|.++++++ . ++.++.|++|... .+++.|+|
T Consensus 22 ~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~---~v~~~~vd~~~~~-----------------------~~~~~~~i 74 (118)
T 2f51_A 22 APGLVLVDFFATWCGPCQRLGQILPSIAEAN-K---DVTFIKVDVDKNG-----------------------NAADAYGV 74 (118)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-T---TSEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-C---CeEEEEEECCCCH-----------------------HHHHhcCC
Confidence 3899999999999999999999999999887 3 4888888887654 58999999
Q ss_pred CCcceEEEECC---CCcEEEe
Q 011791 344 SGIPMLVAIGP---SGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~---~G~iv~~ 361 (477)
.++||+++++. +|+++.+
T Consensus 75 ~~~Pt~~~~~~~~~~G~~~~~ 95 (118)
T 2f51_A 75 SSIPALFFVKKEGNEIKTLDQ 95 (118)
T ss_dssp CSSSEEEEEEEETTEEEEEEE
T ss_pred CCCCEEEEEeCCCCcceEEEe
Confidence 99999999964 3888877
|
| >1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-12 Score=109.87 Aligned_cols=80 Identities=18% Similarity=0.356 Sum_probs=64.7
Q ss_pred ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCc
Q 011791 252 GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGD 331 (477)
Q Consensus 252 ~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~ 331 (477)
.++...+. ..+++ .++|+|||+||++|+.+.|.|.++++++++. ++.++.|+++...
T Consensus 11 ~l~~~~f~-~~~~~-~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~--~v~~~~vd~~~~~------------------- 67 (126)
T 1x5e_A 11 VITDENWR-ELLEG-DWMIEFYAPWCPACQNLQPEWESFAEWGEDL--EVNIAKVDVTEQP------------------- 67 (126)
T ss_dssp ECCTTTHH-HHTSS-EEEEEEECSSCHHHHHHHHHHHHHHHHHGGG--TCEEEEEETTTCH-------------------
T ss_pred EecHHHHH-HHhCC-CEEEEEECCCCHHHHHHhHHHHHHHHHhccC--CeEEEEEECcCCH-------------------
Confidence 55555554 22344 4999999999999999999999999998753 4888888887554
Q ss_pred chhHHHHHhcCCCCcceEEEECCCCcEE
Q 011791 332 ARKASLSRKFKVSGIPMLVAIGPSGRTI 359 (477)
Q Consensus 332 d~~~~l~~~~~v~~~Pt~~lid~~G~iv 359 (477)
.+++.|+|.++||++++ ++|++.
T Consensus 68 ----~~~~~~~v~~~Pt~~~~-~~G~~~ 90 (126)
T 1x5e_A 68 ----GLSGRFIINALPTIYHC-KDGEFR 90 (126)
T ss_dssp ----HHHHHTTCCSSSEEEEE-ETTEEE
T ss_pred ----HHHHHcCCcccCEEEEE-eCCeEE
Confidence 58899999999999999 899863
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.5e-13 Score=125.11 Aligned_cols=106 Identities=16% Similarity=0.202 Sum_probs=81.6
Q ss_pred ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCc
Q 011791 252 GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGD 331 (477)
Q Consensus 252 ~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~ 331 (477)
++++..+......++++||+||++||++|+.+.|.+.+++++++++ +.++.|+++...
T Consensus 101 ~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~---v~~~~vd~~~~~------------------- 158 (210)
T 3apq_A 101 TLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGL---LRIGAVNCGDDR------------------- 158 (210)
T ss_dssp ECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTT---BEEEEEETTTCH-------------------
T ss_pred EecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCc---eEEEEEECCccH-------------------
Confidence 5566655554456899999999999999999999999999998654 888888887554
Q ss_pred chhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCCch
Q 011791 332 ARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPE 398 (477)
Q Consensus 332 d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 398 (477)
.+++.|+|.++||++++ ++|+++.+. .| ..+ .+.|.+.+++++.....
T Consensus 159 ----~l~~~~~v~~~Pt~~~~-~~G~~~~~~-------~G----~~~---~~~l~~~i~~~l~~~~~ 206 (210)
T 3apq_A 159 ----MLCRMKGVNSYPSLFIF-RSGMAAVKY-------NG----DRS---KESLVAFAMQHVRSTVT 206 (210)
T ss_dssp ----HHHHHTTCCSSSEEEEE-CTTSCCEEC-------CS----CCC---HHHHHHHHHHHHHCCSS
T ss_pred ----HHHHHcCCCcCCeEEEE-ECCCceeEe-------cC----CCC---HHHHHHHHHHhCcccce
Confidence 58899999999999999 899987662 23 122 35667777777655433
|
| >1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=5.8e-13 Score=111.55 Aligned_cols=73 Identities=15% Similarity=0.446 Sum_probs=61.3
Q ss_pred cCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhc
Q 011791 262 DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 341 (477)
Q Consensus 262 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 341 (477)
+.++|+++|+||++||++|+.+.|.+.+++++++ ++.++.|+++.. ...+++.|
T Consensus 34 ~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~----~~~~~~vd~~~~----------------------~~~~~~~~ 87 (124)
T 1faa_A 34 AAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL----DVIFLKLDCNQE----------------------NKTLAKEL 87 (124)
T ss_dssp HTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEECSST----------------------THHHHHHH
T ss_pred hcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC----CCEEEEEecCcc----------------------hHHHHHHc
Confidence 3468999999999999999999999999988875 377888877632 23688999
Q ss_pred CCCCcceEEEECCCCcEEEe
Q 011791 342 KVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 342 ~v~~~Pt~~lid~~G~iv~~ 361 (477)
+|+++||++++ ++|+++.+
T Consensus 88 ~v~~~Pt~~~~-~~G~~~~~ 106 (124)
T 1faa_A 88 GIRVVPTFKIL-KENSVVGE 106 (124)
T ss_dssp CCSSSSEEEEE-ETTEEEEE
T ss_pred CCCeeeEEEEE-eCCcEEEE
Confidence 99999997777 89999876
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} | Back alignment and structure |
|---|
Probab=99.41 E-value=8.5e-13 Score=106.55 Aligned_cols=70 Identities=30% Similarity=0.674 Sum_probs=61.4
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+++++|+||++||++|+.+.|.+.+++++++ ++.++.|+++... .+++.|+|
T Consensus 18 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~v~~~~~~-----------------------~~~~~~~v 70 (104)
T 2vim_A 18 KGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP----EVEFAKVDVDQNE-----------------------EAAAKYSV 70 (104)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC----CCEEEEEeccCCH-----------------------HHHHHcCC
Confidence 58999999999999999999999999988874 4888888887543 58899999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
.++|+++++ ++|+++.+
T Consensus 71 ~~~Pt~~~~-~~g~~~~~ 87 (104)
T 2vim_A 71 TAMPTFVFI-KDGKEVDR 87 (104)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred ccccEEEEE-eCCcEEEE
Confidence 999999998 58998876
|
| >2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=9.9e-13 Score=109.74 Aligned_cols=70 Identities=26% Similarity=0.574 Sum_probs=61.3
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+|+++|+||++||++|+.+.|.|.+++++++ ++.++.|++|... .+++.|+|
T Consensus 33 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~vd~~~~~-----------------------~~~~~~~v 85 (122)
T 2vlu_A 33 AKKLVVIDFTASWCGPCRIMAPVFADLAKKFP----NAVFLKVDVDELK-----------------------PIAEQFSV 85 (122)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC----CcEEEEEECCCCH-----------------------HHHHHcCC
Confidence 48999999999999999999999999988875 3778888887543 58899999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
.++||++++ ++|+++.+
T Consensus 86 ~~~Pt~~~~-~~G~~~~~ 102 (122)
T 2vlu_A 86 EAMPTFLFM-KEGDVKDR 102 (122)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred CcccEEEEE-eCCEEEEE
Confidence 999999988 89999876
|
| >2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A | Back alignment and structure |
|---|
Probab=99.41 E-value=6.8e-13 Score=107.92 Aligned_cols=71 Identities=25% Similarity=0.556 Sum_probs=63.0
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+++++|+||++||++|+.+.|.+.+++++++++ +.++.|++|.+. .+++.|+|
T Consensus 17 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~~-----------------------~~~~~~~v 70 (109)
T 2yzu_A 17 QHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGK---LLVAKLDVDENP-----------------------KTAMRYRV 70 (109)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTT---BEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCc---eEEEEEECCCCH-----------------------hHHHhCCC
Confidence 4799999999999999999999999999988753 888888887554 58899999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
.++|+++++ ++|+++.+
T Consensus 71 ~~~Pt~~~~-~~g~~~~~ 87 (109)
T 2yzu_A 71 MSIPTVILF-KDGQPVEV 87 (109)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred CcCCEEEEE-eCCcEeee
Confidence 999999999 89998876
|
| >2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.1e-13 Score=111.67 Aligned_cols=72 Identities=18% Similarity=0.449 Sum_probs=63.5
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+|+++|+||++||++|+.+.|.|.+++++++++ ++.++.|++|... .+++.|+|
T Consensus 32 ~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~--~v~~~~vd~d~~~-----------------------~~~~~~~v 86 (121)
T 2j23_A 32 GDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGD--KVGFYKVDVDEQS-----------------------QIAQEVGI 86 (121)
T ss_dssp SSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHH--HSEEEEEETTTCH-----------------------HHHHHHTC
T ss_pred CCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCC--cEEEEEEECcCCH-----------------------HHHHHcCC
Confidence 4899999999999999999999999999888764 5888888888654 58899999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
.++||++++ ++|+++.+
T Consensus 87 ~~~Pt~~~~-~~G~~~~~ 103 (121)
T 2j23_A 87 RAMPTFVFF-KNGQKIDT 103 (121)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred CcccEEEEE-ECCeEEee
Confidence 999999999 69998876
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.11 E-value=2e-14 Score=121.63 Aligned_cols=83 Identities=22% Similarity=0.518 Sum_probs=66.5
Q ss_pred CCceecccCCCCEEEEEEeCCCChhhHhHhHHH---HHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCc
Q 011791 255 GGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGD 331 (477)
Q Consensus 255 g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~ 331 (477)
.+.+.++...||++||+|||+||++|+.+.|.+ .++.+.++.+ +.++.|+++.+.
T Consensus 9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~------------------- 66 (130)
T 2lst_A 9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEAR---FVVASVSVDTPE------------------- 66 (130)
Confidence 556666777899999999999999999999999 8888777653 667766665332
Q ss_pred chhHHHHHhcCCCCcceEEEECC-CCcE--EEe
Q 011791 332 ARKASLSRKFKVSGIPMLVAIGP-SGRT--ITK 361 (477)
Q Consensus 332 d~~~~l~~~~~v~~~Pt~~lid~-~G~i--v~~ 361 (477)
...+++.|+|.++||+++||+ +|++ +.+
T Consensus 67 --~~~~~~~~~v~~~Pt~~~~d~~~G~~~~~~~ 97 (130)
T 2lst_A 67 --GQELARRYRVPGTPTFVFLVPKAGAWEEVGR 97 (130)
Confidence 246889999999999999996 5888 655
|
| >3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.4e-13 Score=108.68 Aligned_cols=72 Identities=18% Similarity=0.343 Sum_probs=59.9
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.+|+|+|+|||+||+||+.+.|.+.++.+.+.+ +.++.|.+|.. ..+++.|+|
T Consensus 19 ~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~----~~~~~vd~d~~-----------------------~~l~~~~~V 71 (105)
T 3zzx_A 19 GNKLVVIDFYATWCGPCKMIAPKLEELSQSMSD----VVFLKVDVDEC-----------------------EDIAQDNQI 71 (105)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----EEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred CCCEEEEEEECCCCCCccCCCcchhhhhhccCC----eEEEEEecccC-----------------------HHHHHHcCC
Confidence 468999999999999999999999999988753 66777776644 348899999
Q ss_pred ccCCeEEEECCCCCccccch
Q 011791 184 STLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~~ 203 (477)
+++||++++ ++|+.+.+..
T Consensus 72 ~~~PT~~~~-~~G~~v~~~~ 90 (105)
T 3zzx_A 72 ACMPTFLFM-KNGQKLDSLS 90 (105)
T ss_dssp CBSSEEEEE-ETTEEEEEEE
T ss_pred CeecEEEEE-ECCEEEEEEe
Confidence 999998888 5898876653
|
| >4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.9e-13 Score=131.73 Aligned_cols=110 Identities=20% Similarity=0.252 Sum_probs=85.1
Q ss_pred CcCCCcee-cCCCCeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcC
Q 011791 84 SHSRDFVI-SSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGS 161 (477)
Q Consensus 84 ~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~ 161 (477)
+.+|+|.+ +.+|++++|++++||+|+|+|| +.||+.|..+++.+.+ ...+ +++||+||.|. .+..+++.++
T Consensus 2 ak~p~F~l~~~~G~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~----~~~~--~~~v~gis~D~-~~~~~~f~~~ 74 (322)
T 4eo3_A 2 ARVKHFELLTDEGKTFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSR----ENFE--KAQVVGISRDS-VEALKRFKEK 74 (322)
T ss_dssp CBCCCCEEEETTSCEEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHHH----SCCT--TEEEEEEESCC-HHHHHHHHHH
T ss_pred CCCCCcEEECCCcCEEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHHH----HhhC--CCEEEEEeCCC-HHHHHHHHHh
Confidence 46899954 9999999999999999999999 5789999999887643 2223 39999999984 4555556554
Q ss_pred CCCccccCCchhHHHHHHHcCc----ccCCeEEEECCCCCcccc
Q 011791 162 MPWLALPFKDKSREKLARYFEL----STLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~v----~~~P~~~lid~~G~i~~~ 201 (477)
.. +.+|...+....+++.||| ..+|+++|||++|+|++.
T Consensus 75 ~~-l~fp~l~D~~~~v~~~ygv~~~~~~~r~tfiId~~G~i~~~ 117 (322)
T 4eo3_A 75 ND-LKVTLLSDPEGILHEFFNVLENGKTVRSTFLIDRWGFVRKE 117 (322)
T ss_dssp HT-CCSEEEECTTCHHHHHTTCEETTEECCEEEEECTTSBEEEE
T ss_pred hC-CceEEEEcCchHHHHhcCCCCCCcCccEEEEECCCCEEEEE
Confidence 33 3444444556779999999 458999999999998754
|
| >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-12 Score=110.43 Aligned_cols=102 Identities=23% Similarity=0.395 Sum_probs=70.6
Q ss_pred ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCc
Q 011791 252 GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGD 331 (477)
Q Consensus 252 ~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~ 331 (477)
.++++.+......++.++|+||++||++|+.+.|.|.+++++++++ +.++.|+++...
T Consensus 37 ~l~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~~------------------- 94 (140)
T 1v98_A 37 EADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGR---LKVVKVNVDEHP------------------- 94 (140)
T ss_dssp ------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTCH-------------------
T ss_pred cCCHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccCc---eEEEEEECCCCH-------------------
Confidence 4445555433333434999999999999999999999999998753 888888887554
Q ss_pred chhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHc
Q 011791 332 ARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAK 394 (477)
Q Consensus 332 d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 394 (477)
.+++.|+|.++||++++ ++|+++.+. .|. .+. +.|.+.+++++.
T Consensus 95 ----~l~~~~~v~~~Pt~~~~-~~G~~~~~~-------~G~----~~~---~~l~~~i~~~l~ 138 (140)
T 1v98_A 95 ----GLAARYGVRSVPTLVLF-RRGAPVATW-------VGA----SPR---RVLEERLRPYLE 138 (140)
T ss_dssp ----HHHHHTTCCSSSEEEEE-ETTEEEEEE-------ESC----CCH---HHHHHHHHHHHT
T ss_pred ----HHHHHCCCCccCEEEEE-eCCcEEEEE-------eCC----CCH---HHHHHHHHHHHc
Confidence 58899999999999999 799998763 332 223 456666666654
|
| >2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A | Back alignment and structure |
|---|
Probab=99.40 E-value=9.6e-13 Score=108.82 Aligned_cols=70 Identities=23% Similarity=0.527 Sum_probs=61.4
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
+||+++|+||++||++|+.+.|.|.+++++++ ++.++.|++|... .+++.|+|
T Consensus 29 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~----~v~~~~vd~~~~~-----------------------~l~~~~~v 81 (114)
T 2oe3_A 29 QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP----DVRFVKCDVDESP-----------------------DIAKECEV 81 (114)
T ss_dssp HCSEEEEEEECTTCHHHHHTHHHHHHHHHHCT----TSEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC----CCEEEEEECCCCH-----------------------HHHHHCCC
Confidence 38999999999999999999999999988875 3788888887554 58899999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
.++||++++ ++|+++.+
T Consensus 82 ~~~Pt~~~~-~~G~~~~~ 98 (114)
T 2oe3_A 82 TAMPTFVLG-KDGQLIGK 98 (114)
T ss_dssp CSBSEEEEE-ETTEEEEE
T ss_pred CcccEEEEE-eCCeEEEE
Confidence 999999988 89999876
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=107.57 Aligned_cols=70 Identities=24% Similarity=0.640 Sum_probs=61.7
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.|++++|+||++||++|+.+.|.+++++++++ ++.++.|++|... .+++.|+|
T Consensus 25 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~v~~~~~~-----------------------~~~~~~~v 77 (113)
T 1ti3_A 25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFP----NVTFLKVDVDELK-----------------------AVAEEWNV 77 (113)
T ss_dssp SSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS----SEEEEEEETTTCH-----------------------HHHHHHHC
T ss_pred cCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC----CcEEEEEEccccH-----------------------HHHHhCCC
Confidence 48999999999999999999999999988874 4888888887553 58899999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
.++|+++++ ++|+++.+
T Consensus 78 ~~~Pt~~~~-~~G~~~~~ 94 (113)
T 1ti3_A 78 EAMPTFIFL-KDGKLVDK 94 (113)
T ss_dssp SSTTEEEEE-ETTEEEEE
T ss_pred CcccEEEEE-eCCEEEEE
Confidence 999999999 79999876
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=121.81 Aligned_cols=106 Identities=23% Similarity=0.437 Sum_probs=81.3
Q ss_pred eccCCCceecccC-CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceecc
Q 011791 251 VGKNGGKVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPF 329 (477)
Q Consensus 251 l~~~g~~~~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~ 329 (477)
..++.+.+...-+ ++|+++|+|||+||++|+.+.|.|.+++++++++ +.++.|++|...
T Consensus 15 ~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~d~~~----------------- 74 (222)
T 3dxb_A 15 IHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNP----------------- 74 (222)
T ss_dssp EECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCT-----------------
T ss_pred eeCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCCCH-----------------
Confidence 3566666644322 5899999999999999999999999999999764 888888888654
Q ss_pred CcchhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCCc
Q 011791 330 GDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWP 397 (477)
Q Consensus 330 ~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 397 (477)
.+++.|+|.++||++++ ++|+++.+. .|. .+ .+.|.+.+++++....
T Consensus 75 ------~l~~~~~v~~~Pt~~~~-~~G~~~~~~-------~G~----~~---~~~l~~~l~~~l~~~~ 121 (222)
T 3dxb_A 75 ------GTAPKYGIRGIPTLLLF-KNGEVAATK-------VGA----LS---KGQLKEFLDANLAGSA 121 (222)
T ss_dssp ------TTGGGGTCCSBSEEEEE-ETTEEEEEE-------ESC----CC---HHHHHHHHHHHSCCSC
T ss_pred ------HHHHHcCCCcCCEEEEE-ECCeEEEEe-------ccc----cC---hHHHHHHHHhhccccc
Confidence 47889999999999999 589988763 332 22 3566777777775433
|
| >2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=110.80 Aligned_cols=82 Identities=21% Similarity=0.385 Sum_probs=64.2
Q ss_pred ccCCCceecccC-CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccC
Q 011791 252 GKNGGKVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFG 330 (477)
Q Consensus 252 ~~~g~~~~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~ 330 (477)
.+++..+..... .+++++|+||++||++|+.+.|.|.+++++++.+ .++.++.|+++...
T Consensus 11 ~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~~~vd~~~~~------------------ 71 (133)
T 2dj3_A 11 VVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQ-KDLVIAKMDATAND------------------ 71 (133)
T ss_dssp ECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTS-SSEEEEEECTTTSC------------------
T ss_pred EEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCC-CCEEEEEecCCcCH------------------
Confidence 666666655444 4899999999999999999999999999999752 24666666655332
Q ss_pred cchhHHHHHhcCCCCcceEEEECCCCc
Q 011791 331 DARKASLSRKFKVSGIPMLVAIGPSGR 357 (477)
Q Consensus 331 ~d~~~~l~~~~~v~~~Pt~~lid~~G~ 357 (477)
.+++.|+|.++||+++++++|+
T Consensus 72 -----~~~~~~~v~~~Pt~~~~~~g~~ 93 (133)
T 2dj3_A 72 -----ITNDQYKVEGFPTIYFAPSGDK 93 (133)
T ss_dssp -----CCCSSCCCSSSSEEEEECTTCT
T ss_pred -----HHHhhcCCCcCCEEEEEeCCCc
Confidence 3567899999999999976664
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=109.03 Aligned_cols=75 Identities=20% Similarity=0.418 Sum_probs=60.3
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.|++++|+|||+||++|+.+.|.|.+++++++. .+++++++...+ .+....+++.|+|
T Consensus 28 ~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~-----~v~~~~~~~~~~-----------------~~~~~~~~~~~~i 85 (118)
T 1zma_A 28 KKETATFFIGRKTCPYCRKFAGTLSGVVAETKA-----HIYFINSEEPSQ-----------------LNDLQAFRSRYGI 85 (118)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC-----CCEEEETTCGGG-----------------HHHHHHHHHHHTC
T ss_pred CCCeEEEEEECCCCccHHHHHHHHHHHHHhcCC-----eEEEEECCCcCc-----------------HHHHHHHHHHcCC
Confidence 378999999999999999999999999988753 367777764321 0123468889999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
.++||++++ ++|+++.+
T Consensus 86 ~~~Pt~~~~-~~G~~~~~ 102 (118)
T 1zma_A 86 PTVPGFVHI-TDGQINVR 102 (118)
T ss_dssp CSSCEEEEE-ETTEEEEE
T ss_pred CCCCeEEEE-ECCEEEEE
Confidence 999999999 68998876
|
| >3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.6e-13 Score=111.37 Aligned_cols=89 Identities=19% Similarity=0.330 Sum_probs=72.8
Q ss_pred CCCceecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCc
Q 011791 86 SRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWL 165 (477)
Q Consensus 86 ~p~fl~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~ 165 (477)
.|++. ..+++.+.....+||+++|+||++||++|+.+.|.|.+++++++++ +.++.|++|...
T Consensus 24 ~~~~~-~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~---v~~~~vd~d~~~------------- 86 (128)
T 3ul3_B 24 VPRLQ-QNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKR---IYLLKVDLDKNE------------- 86 (128)
T ss_dssp --CCC-CCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG---EEEEEEEGGGCH-------------
T ss_pred CCccc-cCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---eEEEEEECCCCH-------------
Confidence 44432 4566667777789999999999999999999999999999999853 888888887553
Q ss_pred cccCCchhHHHHHHHcCcccCCeEEEECCCCCccccc
Q 011791 166 ALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 166 ~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 202 (477)
.+++.|+|.++|+++++ ++|+++.+.
T Consensus 87 ----------~l~~~~~v~~~Pt~~~~-~~G~~~~~~ 112 (128)
T 3ul3_B 87 ----------SLARKFSVKSLPTIILL-KNKTMLARK 112 (128)
T ss_dssp ----------HHHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred ----------HHHHHcCCCCcCEEEEE-ECCEEEEEe
Confidence 47889999999999999 688877654
|
| >2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-12 Score=107.63 Aligned_cols=69 Identities=25% Similarity=0.599 Sum_probs=61.1
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+|+++|+||++||++|+.+.|.|.+++++++ ++.++.|++|... .+++.|+|.
T Consensus 28 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~v~~~~~~-----------------------~~~~~~~v~ 80 (118)
T 2vm1_A 28 GKLVIIDFTASWCGPCRVIAPVFAEYAKKFP----GAIFLKVDVDELK-----------------------DVAEAYNVE 80 (118)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTSH-----------------------HHHHHTTCC
T ss_pred CCEEEEEEECCCCHhHHHHhHHHHHHHHHCC----CcEEEEEEcccCH-----------------------HHHHHcCCC
Confidence 7899999999999999999999999988875 4788888887543 588999999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++|+++++ ++|+++.+
T Consensus 81 ~~Pt~~~~-~~g~~~~~ 96 (118)
T 2vm1_A 81 AMPTFLFI-KDGEKVDS 96 (118)
T ss_dssp SBSEEEEE-ETTEEEEE
T ss_pred cCcEEEEE-eCCeEEEE
Confidence 99999999 79999876
|
| >1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=107.79 Aligned_cols=70 Identities=17% Similarity=0.468 Sum_probs=61.3
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.||+++|+||++||++|+.+.|.+.+++++++ ++.++.|+++... .+++.|+|
T Consensus 25 ~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~----~v~~~~vd~~~~~-----------------------~~~~~~~v 77 (112)
T 1syr_A 25 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT----KMVFIKVDVDEVS-----------------------EVTEKENI 77 (112)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTTH-----------------------HHHHHTTC
T ss_pred cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC----CCEEEEEECCCCH-----------------------HHHHHcCC
Confidence 48999999999999999999999999988864 4888888887543 58899999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
.++||++++ ++|+++.+
T Consensus 78 ~~~Pt~~~~-~~G~~~~~ 94 (112)
T 1syr_A 78 TSMPTFKVY-KNGSSVDT 94 (112)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred CcccEEEEE-ECCcEEEE
Confidence 999998888 69998876
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=99.39 E-value=4e-12 Score=118.43 Aligned_cols=134 Identities=13% Similarity=0.101 Sum_probs=83.1
Q ss_pred CChhHHHhHhhhcccCCcceEEEEcCCCeEechhhHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhccCcCCC
Q 011791 9 SDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRD 88 (477)
Q Consensus 9 ~D~~~~~~L~~~f~v~g~Ptl~~~~~~g~~~~~~g~~~i~~~g~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~p~ 88 (477)
-|++.+..||++|+|++|||+++|+.+..+....|.. +.+.+..+...... ..+ ....
T Consensus 65 vd~~~~~~l~~~~~v~~~Ptl~~~~~~~~~~~~~G~~------------~~~~l~~~~~~~~~---------~~~-~~~~ 122 (229)
T 2ywm_A 65 YSPFTHKEETEKYGVDRVPTIVIEGDKDYGIRYIGLP------------AGLEFTTLINGIFH---------VSQ-RKPQ 122 (229)
T ss_dssp ECTTTCHHHHHHTTCCBSSEEEEESSSCCCEEEESCC------------CTTHHHHHHHHHHH---------HHT-TCCS
T ss_pred ecCcccHHHHHHcCCCcCcEEEEECCCcccceecCCc------------cHHHHHHHHHHHHh---------ccC-CccC
Confidence 3788889999999999999999997322222222211 00111111100000 000 0000
Q ss_pred ceecCCCCeE-ecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccc
Q 011791 89 FVISSDGRKI-SVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLAL 167 (477)
Q Consensus 89 fl~~~~g~~v-~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~ 167 (477)
+ +.+.+ .+....+++++++||++||++|+.+.|.+.++++.+. ++.++.|.+|..
T Consensus 123 l----~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~----~v~~~~vd~~~~---------------- 178 (229)
T 2ywm_A 123 L----SEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALAND----YITSKVIDASEN---------------- 178 (229)
T ss_dssp C----CHHHHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHCT----TEEEEEEEGGGC----------------
T ss_pred C----CHHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHCC----CeEEEEEECCCC----------------
Confidence 0 00000 0112345667899999999999999999999999872 288888877643
Q ss_pred cCCchhHHHHHHHcCcccCCeEEEECCCCCc
Q 011791 168 PFKDKSREKLARYFELSTLPTLVIIGPDGKT 198 (477)
Q Consensus 168 ~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i 198 (477)
..+++.|+|.++|++++ +|++
T Consensus 179 -------~~l~~~~~v~~~Pt~~~---~G~~ 199 (229)
T 2ywm_A 179 -------QDLAEQFQVVGVPKIVI---NKGV 199 (229)
T ss_dssp -------HHHHHHTTCCSSSEEEE---GGGT
T ss_pred -------HHHHHHcCCcccCEEEE---CCEE
Confidence 34788999999999988 6763
|
| >2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-12 Score=109.31 Aligned_cols=83 Identities=25% Similarity=0.514 Sum_probs=67.0
Q ss_pred ccCCCceecccC-CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccC
Q 011791 252 GKNGGKVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFG 330 (477)
Q Consensus 252 ~~~g~~~~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~ 330 (477)
.++...+..... .+++++|+||++||++|+.+.|.+.+++++++.+ +.++.|+++...
T Consensus 16 ~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~------------------ 74 (121)
T 2i1u_A 16 KVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATD---LTVAKLDVDTNP------------------ 74 (121)
T ss_dssp ECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH------------------
T ss_pred ecCHHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCCH------------------
Confidence 344444432222 4789999999999999999999999999988653 888888887554
Q ss_pred cchhHHHHHhcCCCCcceEEEECCCCcEEEe
Q 011791 331 DARKASLSRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 331 ~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
.+++.|+|.++||++++ ++|+++.+
T Consensus 75 -----~~~~~~~i~~~Pt~~~~-~~g~~~~~ 99 (121)
T 2i1u_A 75 -----ETARNFQVVSIPTLILF-KDGQPVKR 99 (121)
T ss_dssp -----HHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred -----HHHHhcCCCcCCEEEEE-ECCEEEEE
Confidence 58899999999999999 69998876
|
| >3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.8e-13 Score=110.75 Aligned_cols=67 Identities=12% Similarity=0.124 Sum_probs=56.9
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++|+|+|||+||++|+.+.|.|.+++++|. ++.++.|++|. ....|+|+
T Consensus 23 ~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~----~v~f~kvd~d~--------------------------~~~~~~v~ 72 (118)
T 3evi_A 23 DVWVIIHLYRSSIPMCLLVNQHLSLLARKFP----ETKFVKAIVNS--------------------------CIQHYHDN 72 (118)
T ss_dssp TCEEEEEEECTTSHHHHHHHHHHHHHHHHCT----TSEEEEEEGGG--------------------------TSTTCCGG
T ss_pred CCeEEEEEeCCCChHHHHHHHHHHHHHHHCC----CCEEEEEEhHH--------------------------hHHHCCCC
Confidence 4599999999999999999999999999874 36677776652 14679999
Q ss_pred CcceEEEECCCCcEEEec
Q 011791 345 GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~~ 362 (477)
++||++++ ++|+.+.+.
T Consensus 73 ~~PT~~~f-k~G~~v~~~ 89 (118)
T 3evi_A 73 CLPTIFVY-KNGQIEAKF 89 (118)
T ss_dssp GCSEEEEE-ETTEEEEEE
T ss_pred CCCEEEEE-ECCEEEEEE
Confidence 99999999 899999883
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-12 Score=125.98 Aligned_cols=72 Identities=17% Similarity=0.344 Sum_probs=64.3
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
++|+|+|+||++||++|+.+.|.+.+++++++++ +.++.|++|... .+++.|+|
T Consensus 25 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~v 78 (287)
T 3qou_A 25 MTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQ---FILAKLDCDAEQ-----------------------MIAAQFGL 78 (287)
T ss_dssp TTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSS---SEEEEEETTTCH-----------------------HHHHTTTC
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEEeCccCH-----------------------HHHHHcCC
Confidence 4899999999999999999999999999999754 888888888654 68999999
Q ss_pred CCcceEEEECCCCcEEEec
Q 011791 344 SGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~~ 362 (477)
+++||++++ ++|+++.+.
T Consensus 79 ~~~Pt~~~~-~~G~~~~~~ 96 (287)
T 3qou_A 79 RAIPTVYLF-QNGQPVDGF 96 (287)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred CCCCeEEEE-ECCEEEEEe
Confidence 999999999 799998763
|
| >2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-12 Score=108.83 Aligned_cols=81 Identities=15% Similarity=0.293 Sum_probs=62.7
Q ss_pred ccCCCceeccc-CCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhc--CCcEEEEEEeCCCChhHHHHHHhcCCCceec
Q 011791 252 GKNGGKVPVSD-LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKER--NESLEVVFISSDRDQTSFDEFFKGMPWLALP 328 (477)
Q Consensus 252 ~~~g~~~~l~~-~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~--~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p 328 (477)
++++.++.... .++++++|+|||+||++|+.+.|.|.++++++++. ..++.++.|+++...
T Consensus 11 ~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---------------- 74 (121)
T 2djj_A 11 VVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND---------------- 74 (121)
T ss_dssp ECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC----------------
T ss_pred EecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc----------------
Confidence 56666665542 36899999999999999999999999999999752 124777777766432
Q ss_pred cCcchhHHHHHhcCCCCcceEEEECCCCcE
Q 011791 329 FGDARKASLSRKFKVSGIPMLVAIGPSGRT 358 (477)
Q Consensus 329 ~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i 358 (477)
+.+ +|.++||+++++++|++
T Consensus 75 --------~~~--~v~~~Pt~~~~~~~~~~ 94 (121)
T 2djj_A 75 --------VPD--EIQGFPTIKLYPAGAKG 94 (121)
T ss_dssp --------CSS--CCSSSSEEEEECSSCTT
T ss_pred --------ccc--ccCcCCeEEEEeCcCCC
Confidence 233 99999999999877773
|
| >2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.7e-13 Score=113.43 Aligned_cols=90 Identities=21% Similarity=0.355 Sum_probs=68.8
Q ss_pred CcceeccCCCcee--cccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCC
Q 011791 247 LDFVVGKNGGKVP--VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW 324 (477)
Q Consensus 247 p~f~l~~~g~~~~--l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~ 324 (477)
++.+..++...+. +..-++++++|+|||+||++|+.+.|.|.++++++++. ++.++.|+++...
T Consensus 6 ~~~v~~l~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~~~~~------------ 71 (137)
T 2dj0_A 6 SGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCT--GLNFGKVDVGRYT------------ 71 (137)
T ss_dssp CSCCEECCTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSS--SCEEEECCTTTCH------------
T ss_pred CceEEEccHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC--CeEEEEEeCccCH------------
Confidence 3334344454443 33345679999999999999999999999999999742 4777777666543
Q ss_pred ceeccCcchhHHHHHhcCCC------CcceEEEECCCCcEEEec
Q 011791 325 LALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 325 ~~~p~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~iv~~~ 362 (477)
.+++.|+|. ++||++++ ++|+++.+.
T Consensus 72 -----------~~~~~~~v~~~~~~~~~Pt~~~~-~~G~~~~~~ 103 (137)
T 2dj0_A 72 -----------DVSTRYKVSTSPLTKQLPTLILF-QGGKEAMRR 103 (137)
T ss_dssp -----------HHHHHTTCCCCSSSSCSSEEEEE-SSSSEEEEE
T ss_pred -----------HHHHHccCcccCCcCCCCEEEEE-ECCEEEEEe
Confidence 578889998 99999999 799988763
|
| >2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A | Back alignment and structure |
|---|
Probab=99.37 E-value=9.6e-13 Score=108.00 Aligned_cols=70 Identities=17% Similarity=0.368 Sum_probs=60.6
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+++++|+||++||++|+.+.|.|.+++++++ ++.++.|+++... .+++.|+|
T Consensus 18 ~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~~-----------------------~l~~~~~v 70 (110)
T 2l6c_A 18 GLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP----QVAISSVDSEARP-----------------------ELMKELGF 70 (110)
T ss_dssp TCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT----TSCEEEEEGGGCH-----------------------HHHHHTTC
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC----CcEEEEEcCcCCH-----------------------HHHHHcCC
Confidence 47899999999999999999999998877764 4778888776543 68899999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
.++||++++ ++|+++.+
T Consensus 71 ~~~Pt~~~~-~~G~~v~~ 87 (110)
T 2l6c_A 71 ERVPTLVFI-RDGKVAKV 87 (110)
T ss_dssp CSSCEEEEE-ESSSEEEE
T ss_pred cccCEEEEE-ECCEEEEE
Confidence 999999999 89999887
|
| >2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana} | Back alignment and structure |
|---|
Probab=99.36 E-value=8e-13 Score=116.94 Aligned_cols=118 Identities=14% Similarity=0.223 Sum_probs=97.8
Q ss_pred hhccCCCcceeccCC--Cceeccc-CCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEE-EEEEeCCCChhHH
Q 011791 241 VLVSGDLDFVVGKNG--GKVPVSD-LAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLE-VVFISSDRDQTSF 315 (477)
Q Consensus 241 ~~~~~~p~f~l~~~g--~~~~l~~-~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~-iv~i~~d~~~~~~ 315 (477)
.++...|+|.+..+| +++++++ ++||++||+|| +.|||.|..+++.+++.+.+|+++ +++ |++||+| +....
T Consensus 15 ~vGd~aPdf~l~~~g~~~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~--gv~~VigIS~D-~~~~~ 91 (171)
T 2xhf_A 15 KVGDIIPDVLVYEDVPSKSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEE--GYHTIACIAVN-DPFVM 91 (171)
T ss_dssp CTTCBCCCCEEECSSTTCEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHT--TCCEEEEEESS-CHHHH
T ss_pred cCcCCCCCeEEecCCCCcEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC--CCCEEEEEeCC-CHHHH
Confidence 345667999994444 8999999 59999999998 689999999999999999999987 685 9999999 55677
Q ss_pred HHHHhcCCC-ceeccCcchhHHHHHhcCCC-----------CcceEEEECCCCcEEEec
Q 011791 316 DEFFKGMPW-LALPFGDARKASLSRKFKVS-----------GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 316 ~~~~~~~~~-~~~p~~~d~~~~l~~~~~v~-----------~~Pt~~lid~~G~iv~~~ 362 (477)
++|.++.+. ..+|++.|.+..+++.||+. ....+++|| +|+|+...
T Consensus 92 ~~w~~~~~~~~~f~lLSD~~~~~a~ayGv~~~~~~~g~g~~~~R~tfvId-dG~V~~~~ 149 (171)
T 2xhf_A 92 AAWGKTVDPEHKIRMLADMHGEFTRALGTELDSSKMLGNNRSRRYAMLID-DNKIRSVS 149 (171)
T ss_dssp HHHHHHHCTTCCSEEEECTTSHHHHHHTCBCCCHHHHSSCCBCCEEEEEE-TTEEEEEE
T ss_pred HHHHHhcCCCCCeEEEEeCCchHHHHhCCceeccccCCCcceEEEEEEEe-CCEEEEEE
Confidence 777776663 27999999999999999973 235789998 99999874
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=99.36 E-value=3.5e-12 Score=118.50 Aligned_cols=74 Identities=11% Similarity=0.057 Sum_probs=58.8
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCC-CcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKG-ESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 182 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g-~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (477)
.+++++|+|||+||++|+.+.|.+.++++.++++| .++.++.|+.|.+ ..+++.|+
T Consensus 133 ~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~ 189 (226)
T 1a8l_A 133 DQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEY-----------------------PEWADQYN 189 (226)
T ss_dssp CSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGC-----------------------HHHHHHTT
T ss_pred CCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccC-----------------------HHHHHhCC
Confidence 45666999999999999999999999999998421 1388888877643 34788999
Q ss_pred cccCCeEEEECCCCCcccc
Q 011791 183 LSTLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 183 v~~~P~~~lid~~G~i~~~ 201 (477)
|.++|+++++ ++|+.+.+
T Consensus 190 v~~~Pt~~~~-~~G~~~~~ 207 (226)
T 1a8l_A 190 VMAVPKIVIQ-VNGEDRVE 207 (226)
T ss_dssp CCSSCEEEEE-ETTEEEEE
T ss_pred CcccCeEEEE-eCCceeEE
Confidence 9999998877 47876543
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-13 Score=115.72 Aligned_cols=96 Identities=18% Similarity=0.244 Sum_probs=74.0
Q ss_pred hccCcCCCce-e-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHH---HHHHHHHhcCCCcEEEEEEEcCCCHHHH
Q 011791 81 VLTSHSRDFV-I-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESF 155 (477)
Q Consensus 81 ~~g~~~p~fl-~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~g~~~~vv~is~D~~~~~~ 155 (477)
..+.+.|+|. + +.++....+++.+||+++|+||++||++|+.+.|.+ .++++.++ + +.++.|+++...
T Consensus 5 ~~~~~~~~f~~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~--~--~~~~~vd~~~~~--- 77 (134)
T 2fwh_A 5 AQTQTHLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA--D--TVLLQANVTAND--- 77 (134)
T ss_dssp -----CCCCEECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT--T--SEEEEEECTTCC---
T ss_pred cccccCCCcEEecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc--C--cEEEEEeCCCCc---
Confidence 3456677775 3 445555667777899999999999999999999988 88888875 3 788888886432
Q ss_pred HHhhcCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCcc
Q 011791 156 KRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 199 (477)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~ 199 (477)
+....+++.|++.++|+++++|++|+++
T Consensus 78 ----------------~~~~~l~~~~~v~~~Pt~~~~d~~G~~v 105 (134)
T 2fwh_A 78 ----------------AQDVALLKHLNVLGLPTILFFDGQGQEH 105 (134)
T ss_dssp ----------------HHHHHHHHHTTCCSSSEEEEECTTSCBC
T ss_pred ----------------chHHHHHHHcCCCCCCEEEEECCCCCEe
Confidence 2345688999999999999999999987
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-12 Score=109.87 Aligned_cols=85 Identities=20% Similarity=0.287 Sum_probs=68.7
Q ss_pred CCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchh
Q 011791 94 DGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKS 173 (477)
Q Consensus 94 ~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (477)
+|........+||+++|+||++||++|+.+.|.|.++++++++ + +.++.|+.|.+.
T Consensus 15 ~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~-~--v~~~~v~~~~d~--------------------- 70 (126)
T 2l57_A 15 NVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREG-K--FNIYYARLEEEK--------------------- 70 (126)
T ss_dssp SEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSS-S--CEEEEEETTSSH---------------------
T ss_pred chhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcC-C--eEEEEEeCCCCc---------------------
Confidence 4433335556799999999999999999999999999999873 3 889999844221
Q ss_pred HHHHHHHcCcccCCeEEEECCCCCccccc
Q 011791 174 REKLARYFELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 174 ~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 202 (477)
...+++.|++.++|++++++++|+++.+.
T Consensus 71 ~~~~~~~~~v~~~Pt~~~~~~~G~~~~~~ 99 (126)
T 2l57_A 71 NIDLAYKYDANIVPTTVFLDKEGNKFYVH 99 (126)
T ss_dssp HHHHHHHTTCCSSSEEEEECTTCCEEEEE
T ss_pred hHHHHHHcCCcceeEEEEECCCCCEEEEe
Confidence 24578899999999999999999987654
|
| >1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=7.5e-13 Score=111.10 Aligned_cols=83 Identities=24% Similarity=0.469 Sum_probs=62.6
Q ss_pred ccCCCceeccc-CCCCEEEEEEeCCCCh--------------hhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHH
Q 011791 252 GKNGGKVPVSD-LAGKTILLYFSAHWCP--------------PCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFD 316 (477)
Q Consensus 252 ~~~g~~~~l~~-~~gk~vll~F~a~wC~--------------~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~ 316 (477)
.+++..+.... -.||+++|+|||+||+ +|+.+.|.+.+++++++++ +.++.|++|...
T Consensus 7 ~l~~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~---~~~~~vd~d~~~---- 79 (123)
T 1oaz_A 7 HLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNP---- 79 (123)
T ss_dssp ECCSTTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC----------CEEEEEETTSCT----
T ss_pred ecChhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCC---eEEEEEECCCCH----
Confidence 44455553222 2489999999999999 9999999999999988754 788888887653
Q ss_pred HHHhcCCCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEe
Q 011791 317 EFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 317 ~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
.+++.|+|+++||++++ ++|+++.+
T Consensus 80 -------------------~l~~~~~v~~~Pt~~~~-~~G~~~~~ 104 (123)
T 1oaz_A 80 -------------------GTAPKYGIRGIPTLLLF-KNGEVAAT 104 (123)
T ss_dssp -------------------TTGGGGTCCBSSEEEEE-ESSSEEEE
T ss_pred -------------------HHHHHcCCCccCEEEEE-ECCEEEEE
Confidence 57899999999999999 89999876
|
| >3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-12 Score=113.94 Aligned_cols=113 Identities=12% Similarity=0.145 Sum_probs=69.3
Q ss_pred ccCCCCEEEEEEeCCCChhhHhHhHH---HHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHH
Q 011791 261 SDLAGKTILLYFSAHWCPPCRAFLPK---LIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASL 337 (477)
Q Consensus 261 ~~~~gk~vll~F~a~wC~~C~~~~p~---l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 337 (477)
+...||+|||+|||+||++|+.+.|. ..++.+.+.++ +.++.|+.|...+..+.|.. .+
T Consensus 35 A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~---fv~ikVD~de~~~l~~~y~~---------------~~ 96 (173)
T 3ira_A 35 ARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEA---FVSIKVDREERPDIDNIYMT---------------VC 96 (173)
T ss_dssp HHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHH---CEEEEEETTTCHHHHHHHHH---------------HH
T ss_pred HHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhc---CceeeeCCcccCcHHHHHHH---------------HH
Confidence 33358999999999999999999883 24566666654 55555555543321111111 11
Q ss_pred HHhcCCCCcceEEEECCCCcEEEeccchhhhhc-CCCCCCCCHHHHHHHHHHHHHHHcCCch
Q 011791 338 SRKFKVSGIPMLVAIGPSGRTITKEARDMIAVH-GAEAYPFTEERMKEIDGQYNEMAKGWPE 398 (477)
Q Consensus 338 ~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~-g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 398 (477)
...+||.++|++++++++|+++...+ +. +.. ......+.++++.+.+.-+....
T Consensus 97 q~~~gv~g~Pt~v~l~~dG~~v~~~t-----y~p~~~--~~~~~~f~~~L~~v~~~~~~~~~ 151 (173)
T 3ira_A 97 QIILGRGGWPLNIIMTPGKKPFFAGT-----YIPKNT--RFNQIGMLELVPRIKEIWEQQHE 151 (173)
T ss_dssp HHHHSCCCSSEEEEECTTSCEEEEES-----SCCSSC--BTTBCCHHHHHHHHHHHHHHSHH
T ss_pred HHHcCCCCCcceeeECCCCCceeeee-----eCCCCc--CCCCCCHHHHHHHHHHHHHHHHH
Confidence 22359999999999999999998632 11 111 11223355666666665544333
|
| >1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.35 E-value=3e-12 Score=114.61 Aligned_cols=116 Identities=15% Similarity=0.256 Sum_probs=95.6
Q ss_pred ccCCCccee-c--c---------CC----Cceeccc-CCCCEEEEEEe-CCCChhhH-hHhHHHHHHHHHH-HhcCCcE-
Q 011791 243 VSGDLDFVV-G--K---------NG----GKVPVSD-LAGKTILLYFS-AHWCPPCR-AFLPKLIDAYKKI-KERNESL- 301 (477)
Q Consensus 243 ~~~~p~f~l-~--~---------~g----~~~~l~~-~~gk~vll~F~-a~wC~~C~-~~~p~l~~l~~~~-~~~~~~~- 301 (477)
+...|+|.+ + . +| +++++++ ++||++||+|| +.|||.|. .+++.+++.+.+| +++ ++
T Consensus 4 Gd~aPdf~l~~~~~~~~~~~~~~~G~~~~~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~--g~~ 81 (182)
T 1xiy_A 4 NDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKEN--NFD 81 (182)
T ss_dssp TCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTS--CCS
T ss_pred CCCCCCeEEEcccccccccccccCCCccceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhC--CCc
Confidence 445699998 5 3 67 7999998 69999999888 68999999 8999999999999 876 67
Q ss_pred EEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC------C-----cceEEEECCCCcEEEec
Q 011791 302 EVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS------G-----IPMLVAIGPSGRTITKE 362 (477)
Q Consensus 302 ~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~------~-----~Pt~~lid~~G~iv~~~ 362 (477)
.|++||+| +....++|.++++...||++.|.+..+++.||+. + ...+++|| +|+|+...
T Consensus 82 ~V~gvS~D-~~~~~~~~~~~~~~~~f~lLsD~~~~~a~~yGv~~~~~~~G~g~~~~R~tfvId-dG~V~~~~ 151 (182)
T 1xiy_A 82 DIYCITNN-DIYVLKSWFKSMDIKKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMF 151 (182)
T ss_dssp EEEEEESS-CHHHHHHHHHHTTCCSSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEE
T ss_pred EEEEEeCC-CHHHHHHHHHHcCCCCceEEEeCchHHHHHhCCceeccccCCCCceEEEEEEEc-CCEEEEEE
Confidence 49999999 5567788888777336999999999999999973 2 46789998 99999875
|
| >1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A | Back alignment and structure |
|---|
Probab=99.33 E-value=6.2e-13 Score=117.65 Aligned_cols=77 Identities=14% Similarity=0.038 Sum_probs=61.6
Q ss_pred ecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHH
Q 011791 99 SVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLA 178 (477)
Q Consensus 99 ~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 178 (477)
.+++++||+++|+|||+||+||+.++|.|.++++.++ + +.++.|++|.+.+ ++
T Consensus 48 ~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~--~--v~~~~v~~d~~~~-----------------------~~ 100 (167)
T 1z6n_A 48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP--N--IELAIISKGRAED-----------------------DL 100 (167)
T ss_dssp HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT--T--EEEEEECHHHHHH-----------------------HT
T ss_pred HHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC--C--cEEEEEECCCCHH-----------------------HH
Confidence 3456788999999999999999999999999998774 2 8888887764322 23
Q ss_pred HHc---CcccCCeEEEECCCCCccccc
Q 011791 179 RYF---ELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 179 ~~~---~v~~~P~~~lid~~G~i~~~~ 202 (477)
+.| ++.++|+++++|.+|+++.+.
T Consensus 101 ~~~~~~~v~~iPt~i~~~~~G~~~~~~ 127 (167)
T 1z6n_A 101 RQRLALERIAIPLVLVLDEEFNLLGRF 127 (167)
T ss_dssp TTTTTCSSCCSSEEEEECTTCCEEEEE
T ss_pred HHHHHcCCCCcCeEEEECCCCCEEEEE
Confidence 334 489999999999999886543
|
| >3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.33 E-value=8.9e-13 Score=112.47 Aligned_cols=75 Identities=25% Similarity=0.321 Sum_probs=59.9
Q ss_pred EEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCc
Q 011791 267 TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGI 346 (477)
Q Consensus 267 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~ 346 (477)
+++|+|||+||++|+.+.|.+.+++++++ +.++.|+++..... ...+....+++.|+|.++
T Consensus 33 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-----v~~~~vd~~~~~~~--------------~~~d~~~~l~~~~~v~~~ 93 (135)
T 3emx_A 33 DAILAVYSKTCPHCHRDWPQLIQASKEVD-----VPIVMFIWGSLIGE--------------RELSAARLEMNKAGVEGT 93 (135)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHTTCC-----SCEEEEEECTTCCH--------------HHHHHHHHHHHHHTCCSS
T ss_pred cEEEEEECCcCHhhhHhChhHHHHHHHCC-----CEEEEEECCCchhh--------------hhhhhhHHHHHHcCCcee
Confidence 89999999999999999999999887763 66888887543211 011234578999999999
Q ss_pred ceEEEECCCCcEEEe
Q 011791 347 PMLVAIGPSGRTITK 361 (477)
Q Consensus 347 Pt~~lid~~G~iv~~ 361 (477)
||+++++ +|+++.+
T Consensus 94 Pt~~~~~-~G~~v~~ 107 (135)
T 3emx_A 94 PTLVFYK-EGRIVDK 107 (135)
T ss_dssp SEEEEEE-TTEEEEE
T ss_pred CeEEEEc-CCEEEEE
Confidence 9999995 9999887
|
| >1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-11 Score=121.68 Aligned_cols=163 Identities=15% Similarity=0.199 Sum_probs=104.3
Q ss_pred CCCEEEEEEecCCCccchhhHHH-------HHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHH
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPR-------LVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREK 176 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~-------l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (477)
++++++|+|||+||+ |+.+.|. +.++++.+++.+ +.++.|.+|.+ ..
T Consensus 27 ~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~--v~~~~Vd~~~~-----------------------~~ 80 (350)
T 1sji_A 27 KYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKD--IGFVMVDAKKE-----------------------AK 80 (350)
T ss_dssp TCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSS--EEEEEEETTTT-----------------------HH
T ss_pred hCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcC--cEEEEEeCCCC-----------------------HH
Confidence 468999999999999 9999998 788888887754 88888877654 34
Q ss_pred HHHHcCcccCCeEEEECCCCCccccchhhHHhhcCCCCCCCChhhHHHHHHHHHHHhhhhhhhhhhccCCCcceeccCC-
Q 011791 177 LARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNG- 255 (477)
Q Consensus 177 l~~~~~v~~~P~~~lid~~G~i~~~~~~~~i~~~g~~a~P~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~p~f~l~~~g- 255 (477)
+++.|+|.++||++++ ++|++.... | +.+...+..... . .+. |... .++.
T Consensus 81 l~~~~~v~~~Pt~~~~-~~g~~~~~~--------G----~~~~~~l~~~i~---~---------~~~---~~~~-~l~~~ 131 (350)
T 1sji_A 81 LAKKLGFDEEGSLYVL-KGDRTIEFD--------G----EFAADVLVEFLL---D---------LIE---DPVE-IINSK 131 (350)
T ss_dssp HHHHHTCCSTTEEEEE-ETTEEEEEC--------S----CCCHHHHHHHHH---T---------TSS---CSEE-ECCSH
T ss_pred HHHhcCCCccceEEEE-ECCcEEEec--------C----CCCHHHHHHHHH---H---------hcC---Ccce-eccch
Confidence 8899999999999999 567633111 1 113333332221 0 000 1110 1110
Q ss_pred Ccee-cccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchh
Q 011791 256 GKVP-VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARK 334 (477)
Q Consensus 256 ~~~~-l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~ 334 (477)
..+. +-....+.++|.|+++||.. ..+.+.++++.++++ +.+..+ . +
T Consensus 132 ~~~~~~~~~~~~~~vv~ff~~~~~~---~~~~~~~~A~~~~~~---~~f~~~--~-~----------------------- 179 (350)
T 1sji_A 132 LEVQAFERIEDQIKLIGFFKSEESE---YYKAFEEAAEHFQPY---IKFFAT--F-D----------------------- 179 (350)
T ss_dssp HHHHHHHHCCSSCEEEEECSCTTSH---HHHHHHHHHHHTTTT---SEEEEE--C-C-----------------------
T ss_pred HHHHHHhccCCCcEEEEEECCCCcH---HHHHHHHHHHhhccC---cEEEEE--C-C-----------------------
Confidence 0010 00012456788899998654 457788888888654 444433 2 2
Q ss_pred HHHHHhcCCCCcceEEEECC
Q 011791 335 ASLSRKFKVSGIPMLVAIGP 354 (477)
Q Consensus 335 ~~l~~~~~v~~~Pt~~lid~ 354 (477)
..+++.|++. .|+++++.+
T Consensus 180 ~~~~~~~~v~-~p~i~~~~~ 198 (350)
T 1sji_A 180 KGVAKKLSLK-MNEVDFYEP 198 (350)
T ss_dssp HHHHHHHTCC-TTCEEEECT
T ss_pred HHHHHHcCCC-CCcEEEEeC
Confidence 2578899999 999999966
|
| >4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-12 Score=116.07 Aligned_cols=119 Identities=18% Similarity=0.160 Sum_probs=91.1
Q ss_pred hccCcCCCcee---cC--------CCCeEecCCC-CCCE-EEEEEecCCCccchh-hHHHHHHHHHHHhcCCCcE-EEEE
Q 011791 81 VLTSHSRDFVI---SS--------DGRKISVSDL-EGKT-IGLYFSMSSYKASAE-FTPRLVEVYEKLKGKGESF-EIVL 145 (477)
Q Consensus 81 ~~g~~~p~fl~---~~--------~g~~v~ls~l-~gk~-vll~F~a~wC~~C~~-~~p~l~~l~~~~~~~g~~~-~vv~ 145 (477)
.+|.++|+..+ +. .-++++++++ +||+ ||++||+.|||+|.. ++|.+++.+++|+++| + +|++
T Consensus 11 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g--~d~Vig 88 (176)
T 4f82_A 11 QVGDALPDAQLFEFIDDAREGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAG--IDEIWC 88 (176)
T ss_dssp CTTCBCCCCEEEEEECSCCTTCCSEEEEEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred hcCCcCCceEEEEecccccccccCCceEEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCC--CCEEEE
Confidence 46888999732 22 2278899997 9996 566788999999999 9999999999999988 9 9999
Q ss_pred EEcCCCHHHHHHhhcCCCCc-cccCCchhHHHHHHHcCcc-----------cCCeEEEECCCCCccccch
Q 011791 146 ISLDDEEESFKRDLGSMPWL-ALPFKDKSREKLARYFELS-----------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 146 is~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~i~~~~~ 203 (477)
||.|+ ....+++.++.... .+|...+....+++.||+. ..|+++|| ++|+|++...
T Consensus 89 IS~D~-~~~~~~f~~~~~l~~~f~lLsD~~~~va~ayGv~~~~~~~G~g~~s~R~tfII-~dG~I~~~~~ 156 (176)
T 4f82_A 89 VSVND-AFVMGAWGRDLHTAGKVRMMADGSAAFTHALGLTQDLSARGMGIRSLRYAMVI-DGGVVKTLAV 156 (176)
T ss_dssp EESSC-HHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEEECGGGTCCEEECCEEEEE-ETTEEEEEEE
T ss_pred EeCCC-HHHHHHHHHHhCCCCCceEEEcCchHHHHHhCCCccccccCCCcccccEEEEE-cCCEEEEEEE
Confidence 99995 44555555544321 2555555567789999873 25889999 9999988765
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-12 Score=120.73 Aligned_cols=72 Identities=11% Similarity=0.070 Sum_probs=57.5
Q ss_pred CCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCC-CcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 011791 102 DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKG-ESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180 (477)
Q Consensus 102 ~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g-~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (477)
++.|+++++.|||+||++|+...|.|.+++..++.++ .++.+..|..+.. ..+++.
T Consensus 135 ~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~-----------------------~~~~~~ 191 (243)
T 2hls_A 135 SLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYEN-----------------------PDIADK 191 (243)
T ss_dssp HCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTC-----------------------HHHHHH
T ss_pred HcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccC-----------------------HHHHHH
Confidence 4568899999999999999999999999999985211 2378777776643 236788
Q ss_pred cCcccCCeEEEECCCCCcc
Q 011791 181 FELSTLPTLVIIGPDGKTL 199 (477)
Q Consensus 181 ~~v~~~P~~~lid~~G~i~ 199 (477)
|+|.++|++++ +|+++
T Consensus 192 ~~V~~vPt~~i---~G~~~ 207 (243)
T 2hls_A 192 YGVMSVPSIAI---NGYLV 207 (243)
T ss_dssp TTCCSSSEEEE---TTEEE
T ss_pred cCCeeeCeEEE---CCEEE
Confidence 99999999988 67765
|
| >1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 | Back alignment and structure |
|---|
Probab=99.33 E-value=5.6e-13 Score=110.43 Aligned_cols=84 Identities=23% Similarity=0.432 Sum_probs=64.6
Q ss_pred ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCc
Q 011791 252 GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGD 331 (477)
Q Consensus 252 ~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~ 331 (477)
.+++..+....-++|+++|+||++||++|+.+.|.+.+++++++..+.++.++.++++...
T Consensus 11 ~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~------------------- 71 (120)
T 1mek_A 11 VLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEES------------------- 71 (120)
T ss_dssp ECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCC-------------------
T ss_pred EechhhHHHHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCH-------------------
Confidence 4444444332225899999999999999999999999999998765345666666665432
Q ss_pred chhHHHHHhcCCCCcceEEEECCCCcEE
Q 011791 332 ARKASLSRKFKVSGIPMLVAIGPSGRTI 359 (477)
Q Consensus 332 d~~~~l~~~~~v~~~Pt~~lid~~G~iv 359 (477)
.+++.|+|.++||++++ ++|+++
T Consensus 72 ----~~~~~~~v~~~Pt~~~~-~~g~~~ 94 (120)
T 1mek_A 72 ----DLAQQYGVRGYPTIKFF-RNGDTA 94 (120)
T ss_dssp ----SSHHHHTCCSSSEEEEE-ESSCSS
T ss_pred ----HHHHHCCCCcccEEEEE-eCCCcC
Confidence 47889999999999999 688765
|
| >2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.2e-13 Score=117.28 Aligned_cols=96 Identities=19% Similarity=0.317 Sum_probs=72.7
Q ss_pred cCCCCeEecCCCCCCEEEEEEe-cCCCccchhhHHHH---HHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccc
Q 011791 92 SSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLAL 167 (477)
Q Consensus 92 ~~~g~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l---~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~ 167 (477)
+..|+.+.++..+||+|+|+|| |+||++|+.+.|.| .++.+.+.. ++.++.|+.+... .++ .
T Consensus 34 ~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~---~~~~v~vd~~~~~--------~~~---~ 99 (154)
T 2ju5_A 34 ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGV---HLHMVEVDFPQKN--------HQP---E 99 (154)
T ss_dssp ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHH---HCEEEEEECCSSC--------CCC---H
T ss_pred CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcC---cEEEEEecCcccc--------CCC---h
Confidence 3345666777788999999999 99999999999999 677555533 2788888877553 111 1
Q ss_pred cCCchhHHHHHHHcCcccCCeEEEECCCCCccccc
Q 011791 168 PFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 168 ~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 202 (477)
+ ..+....+++.|+|.++|+++++|++|+++.+.
T Consensus 100 ~-~~~~~~~l~~~~~v~~~Pt~~~~d~~G~~~~~~ 133 (154)
T 2ju5_A 100 E-QRQKNQELKAQYKVTGFPELVFIDAEGKQLARM 133 (154)
T ss_dssp H-HHHHHHHHHHHTTCCSSSEEEEECTTCCEEEEE
T ss_pred h-hHhhHHHHHHHcCCCCCCEEEEEcCCCCEEEEe
Confidence 1 123446789999999999999999999988764
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=1e-11 Score=116.99 Aligned_cols=82 Identities=20% Similarity=0.369 Sum_probs=65.3
Q ss_pred ccCCCceecccC-CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccC
Q 011791 252 GKNGGKVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFG 330 (477)
Q Consensus 252 ~~~g~~~~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~ 330 (477)
.+++..+.-... .+++++|+|||+||++|+++.|.+.++++++++...++.++.|+++.+.
T Consensus 16 ~l~~~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~------------------ 77 (244)
T 3q6o_A 16 LLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEET------------------ 77 (244)
T ss_dssp EECTTTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTT------------------
T ss_pred eCChhhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchh------------------
Confidence 444444433222 3699999999999999999999999999999873346899999886443
Q ss_pred cchhHHHHHhcCCCCcceEEEECC
Q 011791 331 DARKASLSRKFKVSGIPMLVAIGP 354 (477)
Q Consensus 331 ~d~~~~l~~~~~v~~~Pt~~lid~ 354 (477)
...+++.|+|.++||++++++
T Consensus 78 ---~~~l~~~~~v~~~Pt~~~~~~ 98 (244)
T 3q6o_A 78 ---NSAVCRDFNIPGFPTVRFFXA 98 (244)
T ss_dssp ---THHHHHHTTCCSSSEEEEECT
T ss_pred ---hHHHHHHcCCCccCEEEEEeC
Confidence 347899999999999999975
|
| >2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.7e-12 Score=107.99 Aligned_cols=66 Identities=12% Similarity=0.133 Sum_probs=55.3
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
||++||+|||+||++|+.+.|.|.++++++. ++.++.|+++.. .+.|+|.
T Consensus 30 ~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~----~v~~~~vd~~~~--------------------------~~~~~i~ 79 (135)
T 2dbc_A 30 DLWVVIHLYRSSVPMCLVVNQHLSVLARKFP----ETKFVKAIVNSC--------------------------IEHYHDN 79 (135)
T ss_dssp SCEEEEEECCTTCHHHHHHHHHHHHHHHHCS----SEEEEEECCSSS--------------------------CSSCCSS
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHHHHCC----CcEEEEEEhhcC--------------------------cccCCCC
Confidence 6899999999999999999999999988873 466776666532 1479999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++||++++ ++|+++.+
T Consensus 80 ~~Pt~~~~-~~G~~v~~ 95 (135)
T 2dbc_A 80 CLPTIFVY-KNGQIEGK 95 (135)
T ss_dssp CCSEEEEE-SSSSCSEE
T ss_pred CCCEEEEE-ECCEEEEE
Confidence 99999999 49998876
|
| >3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-11 Score=119.33 Aligned_cols=70 Identities=16% Similarity=0.290 Sum_probs=59.7
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.+++++|+|||+||++|+.+.|.+.++++.+++. +.++.|.+|.+. ...+++.|+|
T Consensus 34 ~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~---~~~~~v~~d~~~---------------------~~~l~~~~~I 89 (298)
T 3ed3_A 34 TNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGV---VQVAAVNCDLNK---------------------NKALCAKYDV 89 (298)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTSTT---------------------THHHHHHTTC
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCC---cEEEEEEccCcc---------------------CHHHHHhCCC
Confidence 4688999999999999999999999999999764 788889888432 2568899999
Q ss_pred ccCCeEEEECCCCCc
Q 011791 184 STLPTLVIIGPDGKT 198 (477)
Q Consensus 184 ~~~P~~~lid~~G~i 198 (477)
.++|++++++. |++
T Consensus 90 ~~~Pt~~~~~~-g~~ 103 (298)
T 3ed3_A 90 NGFPTLMVFRP-PKI 103 (298)
T ss_dssp CBSSEEEEEEC-CCC
T ss_pred CccceEEEEEC-Cce
Confidence 99999999985 543
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.9e-12 Score=107.94 Aligned_cols=77 Identities=18% Similarity=0.258 Sum_probs=64.8
Q ss_pred CCCEEEEEEecCCCccchhhHHHHH--HHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLV--EVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 181 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~--~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (477)
+||+|+|+||++||++|+.+.|.|. ++.+.+++. +.++.|+++.. +....+++.|
T Consensus 28 ~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~---~~~~~vd~~~~--------------------~~~~~l~~~~ 84 (133)
T 3fk8_A 28 THKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKH---FEVVKIDVGNF--------------------DRNLELSQAY 84 (133)
T ss_dssp HTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHH---CEEEEEECTTT--------------------TSSHHHHHHT
T ss_pred cCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCC---EEEEEEeCCcc--------------------cchHHHHHHh
Confidence 4789999999999999999999999 999988653 88888888421 1124588999
Q ss_pred Cc---ccCCeEEEECCCCCccccch
Q 011791 182 EL---STLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 182 ~v---~~~P~~~lid~~G~i~~~~~ 203 (477)
++ .++|+++++|++|+++.+..
T Consensus 85 ~v~~~~~~Pt~~~~d~~G~~~~~~~ 109 (133)
T 3fk8_A 85 GDPIQDGIPAVVVVNSDGKVRYTTK 109 (133)
T ss_dssp TCGGGGCSSEEEEECTTSCEEEECC
T ss_pred CCccCCccceEEEECCCCCEEEEec
Confidence 99 99999999999999987754
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A | Back alignment and structure |
|---|
Probab=99.27 E-value=3.6e-12 Score=109.64 Aligned_cols=92 Identities=10% Similarity=0.166 Sum_probs=60.3
Q ss_pred CCEEEEEEeCCC--ChhhHhHhHHHHHHHHHHHhcCCcEE--EEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHh
Q 011791 265 GKTILLYFSAHW--CPPCRAFLPKLIDAYKKIKERNESLE--VVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 340 (477)
Q Consensus 265 gk~vll~F~a~w--C~~C~~~~p~l~~l~~~~~~~~~~~~--iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 340 (477)
++.++|+||++| |++|+.+.|.|.+++++| ++ +. ++.|++|.. ..+++.
T Consensus 34 ~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~---v~~~~~~Vd~d~~-----------------------~~la~~ 86 (142)
T 2es7_A 34 VGDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQ---FDWQVAVADLEQS-----------------------EAIGDR 86 (142)
T ss_dssp CCSEEEEECCCSCC----CCHHHHHHHHHHTC-TT---SCCEEEEECHHHH-----------------------HHHHHT
T ss_pred CCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cc---cceeEEEEECCCC-----------------------HHHHHh
Confidence 455888999887 999999999999999988 43 66 776666532 368999
Q ss_pred cCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCCch
Q 011791 341 FKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPE 398 (477)
Q Consensus 341 ~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 398 (477)
|+|+++||+++| ++|+++.+ ..|.. +. ++|.+.+++++...+.
T Consensus 87 ~~V~~iPT~~~f-k~G~~v~~-------~~G~~----~~---~~l~~~i~~~l~~~~~ 129 (142)
T 2es7_A 87 FNVRRFPATLVF-TDGKLRGA-------LSGIH----PW---AELLTLMRSIVDTPAA 129 (142)
T ss_dssp TTCCSSSEEEEE-SCC----C-------EESCC----CH---HHHHHHHHHHHC----
T ss_pred cCCCcCCeEEEE-eCCEEEEE-------EeCCC----CH---HHHHHHHHHHhccccc
Confidence 999999999999 89999876 33422 22 4566777776654443
|
| >1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=8.9e-12 Score=96.62 Aligned_cols=64 Identities=19% Similarity=0.433 Sum_probs=55.8
Q ss_pred CEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCC
Q 011791 266 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSG 345 (477)
Q Consensus 266 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~ 345 (477)
.+++++||++||++|+.+.|.+.++++++++ ++.++.+++|.+. .+++.|+|.+
T Consensus 3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~~-----------------------~~~~~~~v~~ 56 (85)
T 1fo5_A 3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPD---AVEVEYINVMENP-----------------------QKAMEYGIMA 56 (85)
T ss_dssp CEEEEEEECCCSSCCCTHHHHHHHHHHHCSS---SEEEEEEESSSSC-----------------------CTTTSTTTCC
T ss_pred ceEEEEEeCCCCCchHHHHHHHHHHHHHcCC---ceEEEEEECCCCH-----------------------HHHHHCCCcc
Confidence 5789999999999999999999999988864 4889999887553 4688899999
Q ss_pred cceEEEECCCCcE
Q 011791 346 IPMLVAIGPSGRT 358 (477)
Q Consensus 346 ~Pt~~lid~~G~i 358 (477)
+||+++ +|++
T Consensus 57 ~Pt~~~---~G~~ 66 (85)
T 1fo5_A 57 VPTIVI---NGDV 66 (85)
T ss_dssp SSEEEE---TTEE
T ss_pred cCEEEE---CCEE
Confidence 999999 7887
|
| >3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.7e-11 Score=126.08 Aligned_cols=109 Identities=16% Similarity=0.316 Sum_probs=80.8
Q ss_pred ccCCCceecccC-CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccC
Q 011791 252 GKNGGKVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFG 330 (477)
Q Consensus 252 ~~~g~~~~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~ 330 (477)
.++++++....+ .+++++|+|||+||++|+++.|.+.++++++++...++.++.|+++.+.
T Consensus 16 ~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~------------------ 77 (519)
T 3t58_A 16 LLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEET------------------ 77 (519)
T ss_dssp EECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGG------------------
T ss_pred ECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccc------------------
Confidence 555565544333 3699999999999999999999999999999874346889999887533
Q ss_pred cchhHHHHHhcCCCCcceEEEECC---CCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcC
Q 011791 331 DARKASLSRKFKVSGIPMLVAIGP---SGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKG 395 (477)
Q Consensus 331 ~d~~~~l~~~~~v~~~Pt~~lid~---~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 395 (477)
...+++.|+|.++||+++|++ +|+.+.. .+|. .+.+.|.+.+.+.+..
T Consensus 78 ---~~~l~~~~~V~~~PTl~~f~~g~~~G~~~~~-------~~g~-------~~~~~L~~~l~~~l~~ 128 (519)
T 3t58_A 78 ---NSAVCREFNIAGFPTVRFFQAFTKNGSGATL-------PGAG-------ANVQTLRMRLIDALES 128 (519)
T ss_dssp ---GHHHHHHTTCCSBSEEEEECTTCCSCCCEEE-------CCSS-------CCHHHHHHHHHHHHTT
T ss_pred ---cHHHHHHcCCcccCEEEEEcCcccCCCceeE-------ecCC-------CCHHHHHHHHHHHHhh
Confidence 357999999999999999986 5665444 2221 1235666677766653
|
| >1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=7.7e-12 Score=96.98 Aligned_cols=63 Identities=17% Similarity=0.327 Sum_probs=54.6
Q ss_pred EEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCc
Q 011791 267 TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGI 346 (477)
Q Consensus 267 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~ 346 (477)
.++++||++||++|+.+.|.+.++++++++ ++.++.+++|.+. .+++.|+|.++
T Consensus 3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~~-----------------------~~~~~~~v~~~ 56 (85)
T 1nho_A 3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGD---KIDVEKIDIMVDR-----------------------EKAIEYGLMAV 56 (85)
T ss_dssp CCEEEESCSSSCCSTTHHHHHHHHHHHHCS---SCCEEEECTTTCG-----------------------GGGGGTCSSCS
T ss_pred EEEEEEECCCCcchHHHHHHHHHHHHHhcC---CeEEEEEECCCCH-----------------------HHHHhCCceee
Confidence 368999999999999999999999999875 3788888887554 47889999999
Q ss_pred ceEEEECCCCcE
Q 011791 347 PMLVAIGPSGRT 358 (477)
Q Consensus 347 Pt~~lid~~G~i 358 (477)
||+++ +|++
T Consensus 57 Pt~~~---~G~~ 65 (85)
T 1nho_A 57 PAIAI---NGVV 65 (85)
T ss_dssp SEEEE---TTTE
T ss_pred CEEEE---CCEE
Confidence 99999 7887
|
| >1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1e-11 Score=103.97 Aligned_cols=77 Identities=25% Similarity=0.597 Sum_probs=59.7
Q ss_pred CCCEEEEEEeCC-------CChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHH
Q 011791 264 AGKTILLYFSAH-------WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKAS 336 (477)
Q Consensus 264 ~gk~vll~F~a~-------wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 336 (477)
.||+++|+|||+ ||++|+.+.|.|.++++++++ ++.++.|+++... .| .+....
T Consensus 23 ~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~---~~~~~~vd~~~~~-~~---------------~d~~~~ 83 (123)
T 1wou_A 23 NGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE---GCVFIYCQVGEKP-YW---------------KDPNND 83 (123)
T ss_dssp TTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT---TEEEEEEECCCHH-HH---------------HCTTCH
T ss_pred CCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCC---CcEEEEEECCCch-hh---------------hchhHH
Confidence 489999999999 999999999999999887754 4888888885321 11 012346
Q ss_pred HHHhcCCCCcceEEEECCCCcEE
Q 011791 337 LSRKFKVSGIPMLVAIGPSGRTI 359 (477)
Q Consensus 337 l~~~~~v~~~Pt~~lid~~G~iv 359 (477)
+++.|+|.++||++++++.++++
T Consensus 84 ~~~~~~i~~~Pt~~~~~~~~~~~ 106 (123)
T 1wou_A 84 FRKNLKVTAVPTLLKYGTPQKLV 106 (123)
T ss_dssp HHHHHCCCSSSEEEETTSSCEEE
T ss_pred HHHHCCCCeeCEEEEEcCCceEe
Confidence 88889999999999997644443
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-12 Score=116.43 Aligned_cols=103 Identities=13% Similarity=0.162 Sum_probs=65.7
Q ss_pred EecCCCCCCEEEEEEecCCCccchhhHHHH---HHHHHHHhcCCCcEEEEEEEcCCCHHHHH--HhhcCCCCccccCCch
Q 011791 98 ISVSDLEGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFK--RDLGSMPWLALPFKDK 172 (477)
Q Consensus 98 v~ls~l~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~g~~~~vv~is~D~~~~~~~--~~~~~~~~~~~~~~~~ 172 (477)
+.++..+||+|+|+|||+||+||+.+.+.+ .++.+.+++ ++.++.|++|+..+... .......+..+....+
T Consensus 40 ~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~---~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (172)
T 3f9u_A 40 MEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINN---DYVLITLYVDNKTPLTEPVKIMENGTERTLRTVGD 116 (172)
T ss_dssp HHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHH---HCEEEEEETTCCCEEEEEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC---CEEEEEEecCcccccchhhhhhhcchhhhhhhhhh
Confidence 334446799999999999999999874333 445555544 28999999986542100 0001111112211112
Q ss_pred hHHHH-HHHcCcccCCeEEEECCCCCccccch
Q 011791 173 SREKL-ARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 173 ~~~~l-~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
....+ .+.|++.++|+++++|++|+++.+..
T Consensus 117 ~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~~~ 148 (172)
T 3f9u_A 117 KWSYLQRVKFGANAQPFYVLIDNEGNPLNKSY 148 (172)
T ss_dssp HHHHHHHHHHSCCCSSEEEEECTTSCBSSCCB
T ss_pred hhhHHHHHHcCCCCcceEEEECCCCCEEeecc
Confidence 22223 58999999999999999999987653
|
| >3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.9e-12 Score=121.77 Aligned_cols=84 Identities=20% Similarity=0.384 Sum_probs=66.2
Q ss_pred eeccCCCceeccc-CCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceec
Q 011791 250 VVGKNGGKVPVSD-LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALP 328 (477)
Q Consensus 250 ~l~~~g~~~~l~~-~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p 328 (477)
++.++.+++.-.- -.++++||+|||+||++|+++.|.+.++++++++. +.++.|++|.+.
T Consensus 19 vv~lt~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~---~~~~~v~~d~~~---------------- 79 (298)
T 3ed3_A 19 ISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGV---VQVAAVNCDLNK---------------- 79 (298)
T ss_dssp CEECCHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTSTT----------------
T ss_pred eEEeCHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCC---cEEEEEEccCcc----------------
Confidence 3455554443222 24789999999999999999999999999999764 889999998543
Q ss_pred cCcchhHHHHHhcCCCCcceEEEECCCCcE
Q 011791 329 FGDARKASLSRKFKVSGIPMLVAIGPSGRT 358 (477)
Q Consensus 329 ~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i 358 (477)
...+++.|+|.++||+++++ +|++
T Consensus 80 -----~~~l~~~~~I~~~Pt~~~~~-~g~~ 103 (298)
T 3ed3_A 80 -----NKALCAKYDVNGFPTLMVFR-PPKI 103 (298)
T ss_dssp -----THHHHHHTTCCBSSEEEEEE-CCCC
T ss_pred -----CHHHHHhCCCCccceEEEEE-CCce
Confidence 24789999999999999995 4653
|
| >2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-11 Score=104.39 Aligned_cols=70 Identities=21% Similarity=0.326 Sum_probs=61.7
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.+|+++|+||++||++|+.+.|.|.++++++++. +.++.|++|.+. .+++.|++
T Consensus 37 ~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~~-----------------------~l~~~~~v 90 (136)
T 2l5l_A 37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQ---IVIYKVDTEKEQ-----------------------ELAGAFGI 90 (136)
T ss_dssp CSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC---EEEEEEeCCCCH-----------------------HHHHHcCC
Confidence 4689999999999999999999999999998754 888888887543 47889999
Q ss_pred ccCCeEEEECCCCCcc
Q 011791 184 STLPTLVIIGPDGKTL 199 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~ 199 (477)
.++|+++++|++|+++
T Consensus 91 ~~~Pt~~~~~~~G~~~ 106 (136)
T 2l5l_A 91 RSIPSILFIPMEGKPE 106 (136)
T ss_dssp CSSCEEEEECSSSCCE
T ss_pred CCCCEEEEECCCCcEE
Confidence 9999999999999986
|
| >3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-11 Score=100.58 Aligned_cols=71 Identities=18% Similarity=0.289 Sum_probs=60.7
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+||+++|+||++||++|+.+.|.|.++++++++ +.++.|.+|.. ..+++.|++
T Consensus 23 ~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~----~~~~~vd~~~~-----------------------~~l~~~~~v 75 (109)
T 3f3q_A 23 QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ----ADFYKLDVDEL-----------------------GDVAQKNEV 75 (109)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC----CEEEEEECCCC-----------------------HHHHHHcCC
Confidence 479999999999999999999999999998854 67777877644 347889999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|++++++ +|+++.+.
T Consensus 76 ~~~Pt~~~~~-~G~~~~~~ 93 (109)
T 3f3q_A 76 SAMPTLLLFK-NGKEVAKV 93 (109)
T ss_dssp CSSSEEEEEE-TTEEEEEE
T ss_pred CccCEEEEEE-CCEEEEEE
Confidence 9999999998 89887654
|
| >3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.9e-12 Score=105.30 Aligned_cols=75 Identities=16% Similarity=0.186 Sum_probs=55.4
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
+...+||+|||+||++|+.+.+.+...++.... ...+.++.|+++.+. ...++..|+|
T Consensus 17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~-~~~~~l~~vdv~~~~---------------------~~~la~~~~V 74 (116)
T 3dml_A 17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDE-GRAAPVQRLQMRDPL---------------------PPGLELARPV 74 (116)
T ss_dssp --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHH-HHHSCEEEEETTSCC---------------------CTTCBCSSCC
T ss_pred cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhh-cccceEEEEECCCCC---------------------chhHHHHCCC
Confidence 356899999999999999998766544332111 012668888888653 1246778999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
.++||++||+ +|+.+.+
T Consensus 75 ~g~PT~i~f~-~G~ev~R 91 (116)
T 3dml_A 75 TFTPTFVLMA-GDVESGR 91 (116)
T ss_dssp CSSSEEEEEE-TTEEEEE
T ss_pred CCCCEEEEEE-CCEEEee
Confidence 9999999997 9999987
|
| >2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-11 Score=100.81 Aligned_cols=72 Identities=22% Similarity=0.384 Sum_probs=62.9
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+||+++|+||++||++|+.+.|.|.++++++++. +.++.|++|.+. .+++.|++
T Consensus 16 ~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~---v~~~~vd~~~~~-----------------------~l~~~~~v 69 (112)
T 2voc_A 16 SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDK---LKIVKIDVDENQ-----------------------ETAGKYGV 69 (112)
T ss_dssp SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTT---CEEEEEETTTCC-----------------------SHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---cEEEEEECCCCH-----------------------HHHHHcCC
Confidence 6899999999999999999999999999999763 888889887542 26789999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++ ++|+++.+.
T Consensus 70 ~~~Pt~~~~-~~G~~~~~~ 87 (112)
T 2voc_A 70 MSIPTLLVL-KDGEVVETS 87 (112)
T ss_dssp CSBSEEEEE-ETTEEEEEE
T ss_pred CcccEEEEE-eCCEEEEEE
Confidence 999999999 899987654
|
| >3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-11 Score=107.75 Aligned_cols=69 Identities=20% Similarity=0.323 Sum_probs=59.6
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++|+|+|+|||+||+||+.+.|.|.+++++++++ +.++.|++|... .+++.|+|
T Consensus 22 ~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~---~~~~~vd~d~~~-----------------------~l~~~~~v 75 (149)
T 3gix_A 22 AEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKM---AAIYLVDVDQTA-----------------------VYTQYFDI 75 (149)
T ss_dssp CSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTT---EEEEEEETTTCC-----------------------HHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCc---eEEEEEECCcCH-----------------------HHHHHcCC
Confidence 4789999999999999999999999999988764 888888887543 37889999
Q ss_pred ccCCeEEEECCCCCcc
Q 011791 184 STLPTLVIIGPDGKTL 199 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~ 199 (477)
.++|+++ +.++|+++
T Consensus 76 ~~~Pt~~-~~~~G~~v 90 (149)
T 3gix_A 76 SYIPSTV-FFFNGQHM 90 (149)
T ss_dssp CSSSEEE-EEETTEEE
T ss_pred CccCeEE-EEECCeEE
Confidence 9999999 55689887
|
| >3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.9e-10 Score=115.03 Aligned_cols=164 Identities=10% Similarity=0.133 Sum_probs=101.9
Q ss_pred CCCEEEEEEecCCCccchhhH------HHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHH
Q 011791 104 EGKTIGLYFSMSSYKASAEFT------PRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKL 177 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~------p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l 177 (477)
++++++|+|||+||++|+... |.+.++.+.+++.+ +.++.|.++.. ..+
T Consensus 29 ~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~--v~~~~Vd~~~~-----------------------~~l 83 (367)
T 3us3_A 29 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKG--VGFGLVDSEKD-----------------------AAV 83 (367)
T ss_dssp HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTT--EEEEEEETTTT-----------------------HHH
T ss_pred hCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCC--ceEEEEeCccc-----------------------HHH
Confidence 468999999999999974322 57778888887654 77777777644 348
Q ss_pred HHHcCcccCCeEEEECCCCCccccchhhHHhhcCCCCCCCChhhHHHHHHHHHHHhhhhhhhhhhccCCCcceeccCC-C
Q 011791 178 ARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNG-G 256 (477)
Q Consensus 178 ~~~~~v~~~P~~~lid~~G~i~~~~~~~~i~~~g~~a~P~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~p~f~l~~~g-~ 256 (477)
++.|+|+++||++++. +|+.+... | +.+...+........ . |... .+.. .
T Consensus 84 ~~~~~V~~~PTl~~f~-~G~~~~y~--------G----~~~~~~i~~~i~~~~----~-----------~~v~-~i~~~~ 134 (367)
T 3us3_A 84 AKKLGLTEEDSIYVFK-EDEVIEYD--------G----EFSADTLVEFLLDVL----E-----------DPVE-LIEGER 134 (367)
T ss_dssp HHHHTCCSTTEEEEEE-TTEEEECC--------S----CCSHHHHHHHHHHHH----S-----------CSEE-ECCSHH
T ss_pred HHHcCCCcCceEEEEE-CCcEEEeC--------C----CCCHHHHHHHHHHhc----C-----------CCcE-EcCCHH
Confidence 9999999999999997 57653211 1 123444443332111 0 0000 0100 0
Q ss_pred cee-cccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhH
Q 011791 257 KVP-VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKA 335 (477)
Q Consensus 257 ~~~-l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 335 (477)
.+. +-....+.++|.|+++||. ...+.+.+++..+++. +.+..+ . + .
T Consensus 135 ~~~~~~~~~~~~~vv~ff~~~~~---~~~~~f~~~A~~~~~~---~~F~~~--~-~-----------------------~ 182 (367)
T 3us3_A 135 ELQAFENIEDEIKLIGYFKNKDS---EHYKAFKEAAEEFHPY---IPFFAT--F-D-----------------------S 182 (367)
T ss_dssp HHHHHHHCCSSCEEEEECSCTTC---HHHHHHHHHHHHHTTT---SCEEEE--C-C-----------------------H
T ss_pred HHHHHhccCCCcEEEEEECCCCc---hHHHHHHHHHHhhcCC---cEEEEE--C-C-----------------------H
Confidence 000 0001246788999999876 4566778888888754 434333 2 1 2
Q ss_pred HHHHhcCCCCcceEEEECC
Q 011791 336 SLSRKFKVSGIPMLVAIGP 354 (477)
Q Consensus 336 ~l~~~~~v~~~Pt~~lid~ 354 (477)
.+++.|+|+. |+++++.+
T Consensus 183 ~~~~~~~v~~-p~i~lf~~ 200 (367)
T 3us3_A 183 KVAKKLTLKL-NEIDFYEA 200 (367)
T ss_dssp HHHHHHTCCT-TCEEEECT
T ss_pred HHHHHcCCCC-CeEEEEcC
Confidence 4788899985 99999965
|
| >1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-12 Score=109.62 Aligned_cols=90 Identities=24% Similarity=0.499 Sum_probs=69.7
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+|+++|+||++||++|+.+.|.|.+++++++ ++.++.|++|... .+++.|+|
T Consensus 35 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~v~~~~~~-----------------------~~~~~~~v 87 (130)
T 1wmj_A 35 AGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP----GAVFLKVDVDELK-----------------------EVAEKYNV 87 (130)
T ss_dssp TTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT----TBCCEECCTTTSG-----------------------GGHHHHTC
T ss_pred cCCEEEEEEECCCChhHHHHHHHHHHHHHHCC----CCEEEEEeccchH-----------------------HHHHHcCC
Confidence 58999999999999999999999999988875 3677777776443 57889999
Q ss_pred CCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCC
Q 011791 344 SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGW 396 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 396 (477)
.++||++++ ++|+++.+. .|.+ . ++|.+.+++++...
T Consensus 88 ~~~Pt~~~~-~~g~~~~~~-------~g~~-----~---~~l~~~l~~~~~~~ 124 (130)
T 1wmj_A 88 EAMPTFLFI-KDGAEADKV-------VGAR-----K---DDLQNTIVKHVGAT 124 (130)
T ss_dssp CSSCCCCBC-TTTTCCBCC-------CTTC-----T---TTHHHHHHHHTSSS
T ss_pred CccceEEEE-eCCeEEEEE-------eCCC-----H---HHHHHHHHHHHhcc
Confidence 999999888 899987652 2311 1 45666677666543
|
| >2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-12 Score=105.89 Aligned_cols=71 Identities=25% Similarity=0.614 Sum_probs=60.1
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+|+++|+||++||++|+.+.|.+.+++++++++ +.++.+++|... .+++.|+|
T Consensus 18 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~-----------------------~~~~~~~v 71 (106)
T 2yj7_A 18 SDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGK---VKVVKVNVDENP-----------------------NTAAQYGI 71 (106)
Confidence 3789999999999999999999999999988753 666666665432 57889999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
.++|+++++ ++|+++.+
T Consensus 72 ~~~Pt~~~~-~~g~~~~~ 88 (106)
T 2yj7_A 72 RSIPTLLLF-KNGQVVDR 88 (106)
Confidence 999999999 89998765
|
| >3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=6.3e-11 Score=105.06 Aligned_cols=86 Identities=17% Similarity=0.295 Sum_probs=64.2
Q ss_pred cceeccCCCceecc--cCCCCEEEEEEeC-------CCChhhHhHhHHHHHHHHHHHhcC--CcEEEEEEeCCCChhHHH
Q 011791 248 DFVVGKNGGKVPVS--DLAGKTILLYFSA-------HWCPPCRAFLPKLIDAYKKIKERN--ESLEVVFISSDRDQTSFD 316 (477)
Q Consensus 248 ~f~l~~~g~~~~l~--~~~gk~vll~F~a-------~wC~~C~~~~p~l~~l~~~~~~~~--~~~~iv~i~~d~~~~~~~ 316 (477)
+.++.++..++.-- .-++.+|||+||| +||++|+.+.|.+++++++|.... +++.+..|++|..+
T Consensus 18 ~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~---- 93 (178)
T 3ga4_A 18 TGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVP---- 93 (178)
T ss_dssp TSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCH----
T ss_pred CCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCH----
Confidence 34455666555421 1235689999999 499999999999999999997321 24777777777544
Q ss_pred HHHhcCCCceeccCcchhHHHHHhcCCCCcceEEEECCCC
Q 011791 317 EFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSG 356 (477)
Q Consensus 317 ~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G 356 (477)
.++..|+|+++||++++.+.+
T Consensus 94 -------------------~la~~~~I~siPtl~~F~~g~ 114 (178)
T 3ga4_A 94 -------------------QLVKDLKLQNVPHLVVYPPAE 114 (178)
T ss_dssp -------------------HHHHHTTCCSSCEEEEECCCC
T ss_pred -------------------HHHHHcCCCCCCEEEEEcCCC
Confidence 689999999999999994433
|
| >2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-11 Score=105.95 Aligned_cols=68 Identities=13% Similarity=0.223 Sum_probs=58.8
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++|+|+|||+||+||+...|.|.++.+++.++ +.|+-|.+|+.++ +++.|+|.
T Consensus 41 ~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~---v~f~kVDVDe~~e-----------------------~a~~y~V~ 94 (160)
T 2av4_A 41 ERLVCIRFGHDYDPDCMKMDELLYKVADDIKNF---CVIYLVDITEVPD-----------------------FNTMYELY 94 (160)
T ss_dssp SSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTCCT-----------------------TTTTTTCC
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHccCC---cEEEEEECCCCHH-----------------------HHHHcCCC
Confidence 489999999999999999999999999999765 7888888886643 67899999
Q ss_pred cCCeEEEECCCCCcc
Q 011791 185 TLPTLVIIGPDGKTL 199 (477)
Q Consensus 185 ~~P~~~lid~~G~i~ 199 (477)
++||++++- +|+.+
T Consensus 95 siPT~~fFk-~G~~v 108 (160)
T 2av4_A 95 DPVSVMFFY-RNKHM 108 (160)
T ss_dssp SSEEEEEEE-TTEEE
T ss_pred CCCEEEEEE-CCEEE
Confidence 999998874 66665
|
| >1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A | Back alignment and structure |
|---|
Probab=99.20 E-value=3.1e-11 Score=103.86 Aligned_cols=72 Identities=17% Similarity=0.231 Sum_probs=61.1
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.+++|+|+|||+||++|+.+.|.|.+++++++++ +.++.|++|.+.+ +++.|+|
T Consensus 22 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~d~~~~-----------------------~~~~~~i 75 (142)
T 1qgv_A 22 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF---AVIYLVDITEVPD-----------------------FNKMYEL 75 (142)
T ss_dssp SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTCCT-----------------------TTTSSCS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEEccccCHH-----------------------HHHHcCC
Confidence 4789999999999999999999999999999654 8888898885532 5678999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|++++++ +|+.+...
T Consensus 76 ~~~Pt~~~~~-~G~~v~~~ 93 (142)
T 1qgv_A 76 YDPCTVMFFF-RNKHIMID 93 (142)
T ss_dssp CSSCEEEEEE-TTEEEEEE
T ss_pred CCCCEEEEEE-CCcEEEEe
Confidence 9999999995 78877643
|
| >3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.1e-11 Score=105.51 Aligned_cols=84 Identities=17% Similarity=0.295 Sum_probs=67.6
Q ss_pred cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCc
Q 011791 92 SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKD 171 (477)
Q Consensus 92 ~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~ 171 (477)
+.+++.+...-.++|+++|+||++||++|+.+.|.|.++++++.++ +.++.|+.|.+.
T Consensus 42 ~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~---~~~~~vd~~~~~------------------- 99 (148)
T 3p2a_A 42 NATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGK---VRFVKVNTEAEP------------------- 99 (148)
T ss_dssp ECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-------------------
T ss_pred ecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCc---eEEEEEECcCCH-------------------
Confidence 4455544433357899999999999999999999999999998754 788888877543
Q ss_pred hhHHHHHHHcCcccCCeEEEECCCCCccccc
Q 011791 172 KSREKLARYFELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 172 ~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 202 (477)
.+++.|+|.++|+++++ ++|+++.+.
T Consensus 100 ----~l~~~~~v~~~Pt~~~~-~~G~~~~~~ 125 (148)
T 3p2a_A 100 ----ALSTRFRIRSIPTIMLY-RNGKMIDML 125 (148)
T ss_dssp ----HHHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred ----HHHHHCCCCccCEEEEE-ECCeEEEEE
Confidence 47889999999999999 488877643
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* | Back alignment and structure |
|---|
Probab=99.20 E-value=2e-11 Score=101.05 Aligned_cols=71 Identities=20% Similarity=0.274 Sum_probs=60.2
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+||+++|+||++||++|+.+.|.|.++++++++ +.++.|++|.. ..+++.|+|
T Consensus 30 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~----v~~~~vd~d~~-----------------------~~l~~~~~v 82 (116)
T 3qfa_C 30 GDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN----VIFLEVDVDDC-----------------------QDVASECEV 82 (116)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT----SEEEEEETTTT-----------------------HHHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC----CEEEEEECCCC-----------------------HHHHHHcCC
Confidence 578999999999999999999999999888754 67778877644 347889999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++ ++|+++.+.
T Consensus 83 ~~~Pt~~~~-~~G~~~~~~ 100 (116)
T 3qfa_C 83 KSMPTFQFF-KKGQKVGEF 100 (116)
T ss_dssp CSSSEEEEE-SSSSEEEEE
T ss_pred ccccEEEEE-eCCeEEEEE
Confidence 999999998 688877654
|
| >3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.4e-12 Score=104.93 Aligned_cols=73 Identities=19% Similarity=0.315 Sum_probs=53.0
Q ss_pred ceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHH
Q 011791 257 KVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKAS 336 (477)
Q Consensus 257 ~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 336 (477)
.+++++..+|+++|+|||+||++|+.+.|.|.+++++++ .|-+..|... +....
T Consensus 4 ~~~la~~~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~-------~v~~~~~~~~-------------------~~~~~ 57 (106)
T 3kp8_A 4 AVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP-------YVECSPNGPG-------------------TPQAQ 57 (106)
T ss_dssp HHHHHHHHHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC-------EEESCTTCTT-------------------SCCCH
T ss_pred hhHHHHhcCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC-------EEEEeccccc-------------------chhHH
Confidence 445566668888999999999999999999998875542 3333333210 01347
Q ss_pred HHHhcCCCCcceEEEECCCCcE
Q 011791 337 LSRKFKVSGIPMLVAIGPSGRT 358 (477)
Q Consensus 337 l~~~~~v~~~Pt~~lid~~G~i 358 (477)
+++.|+|+++||+++ +|++
T Consensus 58 l~~~~~V~~~PT~~i---~G~~ 76 (106)
T 3kp8_A 58 ECTEAGITSYPTWII---NGRT 76 (106)
T ss_dssp HHHHTTCCSSSEEEE---TTEE
T ss_pred HHHHcCCeEeCEEEE---CCEE
Confidence 899999999999777 6764
|
| >2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.3e-11 Score=119.78 Aligned_cols=107 Identities=17% Similarity=0.316 Sum_probs=77.2
Q ss_pred ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcC---CcEEEEEEeCCCChhHHHHHHhcCCCceec
Q 011791 252 GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERN---ESLEVVFISSDRDQTSFDEFFKGMPWLALP 328 (477)
Q Consensus 252 ~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~---~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p 328 (477)
.++++.+...--.++++||+|||+||++|+++.|.+.++++++++.+ .++.++.|+++...
T Consensus 9 ~l~~~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~---------------- 72 (382)
T 2r2j_A 9 SLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHS---------------- 72 (382)
T ss_dssp BCCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCH----------------
T ss_pred ECCHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccH----------------
Confidence 45555554322247999999999999999999999999999996432 23777777766543
Q ss_pred cCcchhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcC
Q 011791 329 FGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKG 395 (477)
Q Consensus 329 ~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 395 (477)
.+++.|+|+++||++++ ++|+++.+. +.| +.+ .+.|.+.+.+.+..
T Consensus 73 -------~l~~~~~v~~~Pt~~~f-~~G~~~~~~------~~G----~~~---~~~l~~~i~~~~~~ 118 (382)
T 2r2j_A 73 -------DIAQRYRISKYPTLKLF-RNGMMMKRE------YRG----QRS---VKALADYIRQQKSD 118 (382)
T ss_dssp -------HHHHHTTCCEESEEEEE-ETTEEEEEE------CCS----CCS---HHHHHHHHHHHHSC
T ss_pred -------HHHHhcCCCcCCEEEEE-eCCcEeeee------ecC----cch---HHHHHHHHHHhccC
Confidence 68999999999999999 689887531 222 122 35667777776654
|
| >2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.5e-11 Score=102.77 Aligned_cols=72 Identities=22% Similarity=0.354 Sum_probs=60.3
Q ss_pred CCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 011791 103 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 182 (477)
Q Consensus 103 l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (477)
.++|+++|+||++||++|+.+.|.|.++++++++.+.++.++.|.++.+ ..+++.|+
T Consensus 32 ~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-----------------------~~~~~~~~ 88 (140)
T 2dj1_A 32 ADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSA-----------------------SMLASKFD 88 (140)
T ss_dssp TTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTC-----------------------HHHHHHTT
T ss_pred hcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCccc-----------------------HHHHHHCC
Confidence 3589999999999999999999999999999988764566666665533 34788999
Q ss_pred cccCCeEEEECCCCCc
Q 011791 183 LSTLPTLVIIGPDGKT 198 (477)
Q Consensus 183 v~~~P~~~lid~~G~i 198 (477)
|.++|+++++ ++|++
T Consensus 89 v~~~Pt~~~~-~~G~~ 103 (140)
T 2dj1_A 89 VSGYPTIKIL-KKGQA 103 (140)
T ss_dssp CCSSSEEEEE-ETTEE
T ss_pred CCccCeEEEE-ECCcE
Confidence 9999999999 67873
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.1e-12 Score=106.14 Aligned_cols=81 Identities=12% Similarity=0.208 Sum_probs=62.6
Q ss_pred EecCCCCCCEEEEEEecCCCccchhhHHHH---HHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhH
Q 011791 98 ISVSDLEGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSR 174 (477)
Q Consensus 98 v~ls~l~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (477)
+.++..+||+++|+||++||++|+.+.|.+ ..+.+.+... +.++.|..|.+ ..
T Consensus 20 ~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~vd~~~~---------------------~~ 75 (130)
T 2kuc_A 20 LKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRH---FVNLKMDMEKG---------------------EG 75 (130)
T ss_dssp HHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHH---SEEEEECSSST---------------------TH
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcC---eEEEEEecCCc---------------------ch
Confidence 444445789999999999999999999998 6666655443 55666655531 23
Q ss_pred HHHHHHcCcccCCeEEEECCCCCccccc
Q 011791 175 EKLARYFELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 175 ~~l~~~~~v~~~P~~~lid~~G~i~~~~ 202 (477)
..+++.|++.++|+++++|++|+++.+.
T Consensus 76 ~~~~~~~~v~~~Pt~~~~d~~G~~~~~~ 103 (130)
T 2kuc_A 76 VELRKKYGVHAYPTLLFINSSGEVVYRL 103 (130)
T ss_dssp HHHHHHTTCCSSCEEEEECTTSCEEEEE
T ss_pred HHHHHHcCCCCCCEEEEECCCCcEEEEe
Confidence 5688999999999999999999988654
|
| >2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.5e-10 Score=111.78 Aligned_cols=73 Identities=16% Similarity=0.264 Sum_probs=59.3
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCC---CcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKG---ESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g---~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (477)
++++++|+|||+||++|+.+.|.+.++++.+++.+ .++.++.|.+|.. ..+++.
T Consensus 21 ~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~-----------------------~~l~~~ 77 (382)
T 2r2j_A 21 NADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQH-----------------------SDIAQR 77 (382)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTC-----------------------HHHHHH
T ss_pred cCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCcc-----------------------HHHHHh
Confidence 46899999999999999999999999999996531 2377777776643 448899
Q ss_pred cCcccCCeEEEECCCCCccc
Q 011791 181 FELSTLPTLVIIGPDGKTLH 200 (477)
Q Consensus 181 ~~v~~~P~~~lid~~G~i~~ 200 (477)
|+|.++|+++++. +|+++.
T Consensus 78 ~~v~~~Pt~~~f~-~G~~~~ 96 (382)
T 2r2j_A 78 YRISKYPTLKLFR-NGMMMK 96 (382)
T ss_dssp TTCCEESEEEEEE-TTEEEE
T ss_pred cCCCcCCEEEEEe-CCcEee
Confidence 9999999999885 777654
|
| >1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-11 Score=115.88 Aligned_cols=70 Identities=16% Similarity=0.196 Sum_probs=58.8
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
++++|||+|||+||++|+.+.|.|.+++++|. ++.|+.|+++. . .++..|+|
T Consensus 132 ~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~----~v~f~kVd~d~-~-----------------------~l~~~~~I 183 (245)
T 1a0r_P 132 KITTIVVHIYEDGIKGCDALNSSLICLAAEYP----MVKFCKIKASN-T-----------------------GAGDRFSS 183 (245)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHHHCT----TSEEEEEEHHH-H-----------------------CCTTSSCT
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC----CCEEEEEeCCc-H-----------------------HHHHHCCC
Confidence 48999999999999999999999999998875 36677776642 1 35778999
Q ss_pred CCcceEEEECCCCcEEEec
Q 011791 344 SGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~~ 362 (477)
.++||++++ ++|+++.+.
T Consensus 184 ~~~PTll~~-~~G~~v~~~ 201 (245)
T 1a0r_P 184 DVLPTLLVY-KGGELLSNF 201 (245)
T ss_dssp TTCSEEEEE-ETTEEEEEE
T ss_pred CCCCEEEEE-ECCEEEEEE
Confidence 999999999 599998773
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.3e-11 Score=98.75 Aligned_cols=73 Identities=22% Similarity=0.377 Sum_probs=59.6
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+||+++|+||++||++|+.+.|.|.+++++++..+ +.++.|++|.+ ..+++.|++
T Consensus 20 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~--~~~~~vd~~~~-----------------------~~~~~~~~v 74 (112)
T 3d6i_A 20 GDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSN--VSFLSIDADEN-----------------------SEISELFEI 74 (112)
T ss_dssp TTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTT--SEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCC--EEEEEEecccC-----------------------HHHHHHcCC
Confidence 47899999999999999999999999999875544 88888888754 247889999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++ ++|+++.+.
T Consensus 75 ~~~Pt~~~~-~~G~~~~~~ 92 (112)
T 3d6i_A 75 SAVPYFIII-HKGTILKEL 92 (112)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred CcccEEEEE-ECCEEEEEe
Confidence 999999988 589887654
|
| >1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A | Back alignment and structure |
|---|
Probab=99.18 E-value=3.9e-11 Score=96.95 Aligned_cols=72 Identities=17% Similarity=0.293 Sum_probs=61.7
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.||+++|+||++||++|+.+.|.|.++.++++++ +.++.|++|.+. .+++.|++
T Consensus 16 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---v~~~~v~~~~~~-----------------------~~~~~~~v 69 (105)
T 1nsw_A 16 GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVDENP-----------------------ETTSQFGI 69 (105)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTT---CEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEEECcCCH-----------------------HHHHHcCC
Confidence 4689999999999999999999999999998764 788888887543 47789999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++ ++|+++.+.
T Consensus 70 ~~~Pt~~~~-~~G~~~~~~ 87 (105)
T 1nsw_A 70 MSIPTLILF-KGGRPVKQL 87 (105)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred ccccEEEEE-eCCeEEEEE
Confidence 999999999 799877543
|
| >3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A | Back alignment and structure |
|---|
Probab=99.18 E-value=4.7e-11 Score=96.49 Aligned_cols=72 Identities=22% Similarity=0.389 Sum_probs=62.6
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++++++|+||++||++|+.+.|.+.+++++++++ +.++.|++|.+. .+++.|++
T Consensus 18 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~-----------------------~~~~~~~v 71 (106)
T 3die_A 18 ESGVQLVDFWATACGPCKMIAPVLEELAADYEGK---ADILKLDVDENP-----------------------STAAKYEV 71 (106)
T ss_dssp CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---cEEEEEECCcCH-----------------------HHHHhCCC
Confidence 6899999999999999999999999999999765 788888887553 37789999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|++++++ +|+++.+.
T Consensus 72 ~~~Pt~~~~~-~G~~~~~~ 89 (106)
T 3die_A 72 MSIPTLIVFK-DGQPVDKV 89 (106)
T ss_dssp CSBSEEEEEE-TTEEEEEE
T ss_pred cccCEEEEEe-CCeEEEEE
Confidence 9999999996 88877653
|
| >2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... | Back alignment and structure |
|---|
Probab=99.18 E-value=5.3e-11 Score=96.68 Aligned_cols=72 Identities=18% Similarity=0.337 Sum_probs=62.0
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++|+++|+||++||++|+.+.|.|.+++++++++ +.++.|++|.+. .+++.|++
T Consensus 19 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~~-----------------------~~~~~~~v 72 (108)
T 2trx_A 19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNP-----------------------GTAPKYGI 72 (108)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTCT-----------------------THHHHTTC
T ss_pred cCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCC---cEEEEEECCCCH-----------------------HHHHHcCC
Confidence 5789999999999999999999999999998764 888888887543 26789999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++ ++|+++.+.
T Consensus 73 ~~~Pt~~~~-~~G~~~~~~ 90 (108)
T 2trx_A 73 RGIPTLLLF-KNGEVAATK 90 (108)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred cccCEEEEE-eCCEEEEEE
Confidence 999999999 799887643
|
| >3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.17 E-value=2.1e-11 Score=99.10 Aligned_cols=72 Identities=22% Similarity=0.302 Sum_probs=62.4
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++++++|+||++||++|+.+.|.+.++++.+++. +.++.|+.|... .+++.|++
T Consensus 20 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~-----------------------~~~~~~~i 73 (109)
T 3tco_A 20 NNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGK---AVFGRLNVDENQ-----------------------KIADKYSV 73 (109)
T ss_dssp HSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred cCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCC---ceEEEEccccCH-----------------------HHHHhcCc
Confidence 4899999999999999999999999999999764 778888877543 47889999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++ ++|+++.+.
T Consensus 74 ~~~Pt~~~~-~~g~~~~~~ 91 (109)
T 3tco_A 74 LNIPTTLIF-VNGQLVDSL 91 (109)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred ccCCEEEEE-cCCcEEEee
Confidence 999999999 899887654
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.8e-11 Score=98.14 Aligned_cols=71 Identities=20% Similarity=0.274 Sum_probs=54.0
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++++++|+|||+||++|+.+.|.+.++++++. + +.++.|++|.+. .+++.|++
T Consensus 17 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~--~--~~~~~vd~~~~~-----------------------~l~~~~~v 69 (105)
T 4euy_A 17 EQQLVLLFIKTENCGVCDVMLRKVNYVLENYN--Y--VEKIEILLQDMQ-----------------------EIAGRYAV 69 (105)
T ss_dssp CSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT--T--EEEEEEEECCC--------------------------------
T ss_pred cCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC--C--ceEEEEECCCCH-----------------------HHHHhcCC
Confidence 57999999999999999999999999999883 2 888888887653 36788999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|++++++ +|+++.+.
T Consensus 70 ~~~Pt~~~~~-~G~~~~~~ 87 (105)
T 4euy_A 70 FTGPTVLLFY-NGKEILRE 87 (105)
T ss_dssp CCCCEEEEEE-TTEEEEEE
T ss_pred CCCCEEEEEe-CCeEEEEE
Confidence 9999999995 88877654
|
| >2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.2e-11 Score=99.43 Aligned_cols=71 Identities=15% Similarity=0.221 Sum_probs=60.5
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.+|+++|+||++||++|+.+.|.|.++++++++. +.++.|++|.+ ..+++.|++
T Consensus 34 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~-----------------------~~l~~~~~v 87 (130)
T 2dml_A 34 SDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDV---VKVGAVNADKH-----------------------QSLGGQYGV 87 (130)
T ss_dssp CSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTT---SEEEEEETTTC-----------------------HHHHHHHTC
T ss_pred CCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCc---eEEEEEeCCCC-----------------------HHHHHHcCC
Confidence 4789999999999999999999999999998764 77777877644 347889999
Q ss_pred ccCCeEEEECCCCCccc
Q 011791 184 STLPTLVIIGPDGKTLH 200 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~ 200 (477)
.++|++++++++|+++.
T Consensus 88 ~~~Pt~~~~~~~~~~~~ 104 (130)
T 2dml_A 88 QGFPTIKIFGANKNKPE 104 (130)
T ss_dssp CSSSEEEEESSCTTSCE
T ss_pred CccCEEEEEeCCCCeEE
Confidence 99999999998887443
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=6.5e-11 Score=99.25 Aligned_cols=71 Identities=17% Similarity=0.306 Sum_probs=60.8
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+||+++|+||++||++|+.+.|.|.+++++++ + +.++.|++|.+ ..+++.|++
T Consensus 37 ~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--~--v~~~~vd~d~~-----------------------~~l~~~~~v 89 (124)
T 1xfl_A 37 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLP--N--VLFLKVDTDEL-----------------------KSVASDWAI 89 (124)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS--S--EEEEEEETTTS-----------------------HHHHHHTTC
T ss_pred cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--C--cEEEEEECccC-----------------------HHHHHHcCC
Confidence 57999999999999999999999999999885 3 88888888754 347889999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++ ++|+++.+.
T Consensus 90 ~~~Pt~~~~-~~G~~~~~~ 107 (124)
T 1xfl_A 90 QAMPTFMFL-KEGKILDKV 107 (124)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred CccCEEEEE-ECCEEEEEE
Confidence 999998887 789887654
|
| >2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A | Back alignment and structure |
|---|
Probab=99.16 E-value=4.7e-11 Score=97.67 Aligned_cols=73 Identities=15% Similarity=0.198 Sum_probs=59.5
Q ss_pred CCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 011791 103 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 182 (477)
Q Consensus 103 l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (477)
.+||+++|+||++||++|+.+.|.|.++++++++ +.++.|+.|.. ...+++.|+
T Consensus 22 ~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~----v~~~~vd~~~~----------------------~~~~~~~~~ 75 (111)
T 2pu9_C 22 AGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD----VIFLKLDCNQE----------------------NKTLAKELG 75 (111)
T ss_dssp CTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSST----------------------THHHHHHHC
T ss_pred cCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCC----eEEEEEecCcc----------------------hHHHHHHcC
Confidence 4689999999999999999999999999998863 67777777621 245788999
Q ss_pred cccCCeEEEECCCCCccccc
Q 011791 183 LSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 183 v~~~P~~~lid~~G~i~~~~ 202 (477)
+.++|++ +++++|+++.+.
T Consensus 76 v~~~Pt~-~~~~~G~~~~~~ 94 (111)
T 2pu9_C 76 IRVVPTF-KILKENSVVGEV 94 (111)
T ss_dssp CSBSSEE-EEESSSSEEEEE
T ss_pred CCeeeEE-EEEeCCcEEEEE
Confidence 9999994 556899987654
|
| >3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-10 Score=97.45 Aligned_cols=72 Identities=13% Similarity=0.054 Sum_probs=59.9
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcC--CCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGK--GESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 181 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~--g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (477)
.+++++|+|||+||++|+.+.|.+.++++.+... ..++.++.|.+|.. ..+++.|
T Consensus 32 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~ 88 (127)
T 3h79_A 32 PEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKY-----------------------PDVIERM 88 (127)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTC-----------------------HHHHHHT
T ss_pred CCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEcccc-----------------------HhHHHhc
Confidence 4799999999999999999999999999988632 23478877877644 3478999
Q ss_pred CcccCCeEEEECCCCCc
Q 011791 182 ELSTLPTLVIIGPDGKT 198 (477)
Q Consensus 182 ~v~~~P~~~lid~~G~i 198 (477)
+|.++|+++++++++++
T Consensus 89 ~v~~~Pt~~~~~~g~~~ 105 (127)
T 3h79_A 89 RVSGFPTMRYYTRIDKQ 105 (127)
T ss_dssp TCCSSSEEEEECSSCSS
T ss_pred CCccCCEEEEEeCCCCC
Confidence 99999999999876664
|
| >3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.16 E-value=9e-11 Score=95.16 Aligned_cols=73 Identities=10% Similarity=0.199 Sum_probs=62.0
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|+|+|+|||+|+.+.|.+++++++ . ++.++.|.+|...+ -...++..|+|+
T Consensus 24 ~~~vvi~khatwCgpc~~~~~~~e~~~~~--~---~v~~~~vdVde~r~-------------------~Sn~IA~~~~V~ 79 (112)
T 3iv4_A 24 NKYVFVLKHSETCPISANAYDQFNKFLYE--R---DMDGYYLIVQQERD-------------------LSDYIAKKTNVK 79 (112)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHH--H---TCCEEEEEGGGGHH-------------------HHHHHHHHHTCC
T ss_pred CCCEEEEEECCcCHhHHHHHHHHHHHhcc--C---CceEEEEEeecCch-------------------hhHHHHHHhCCc
Confidence 78999999999999999999999998874 3 47899998885532 124589999999
Q ss_pred -CcceEEEECCCCcEEEec
Q 011791 345 -GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 345 -~~Pt~~lid~~G~iv~~~ 362 (477)
..|++++| ++|+++++.
T Consensus 80 h~sPq~il~-k~G~~v~~~ 97 (112)
T 3iv4_A 80 HESPQAFYF-VNGEMVWNR 97 (112)
T ss_dssp CCSSEEEEE-ETTEEEEEE
T ss_pred cCCCeEEEE-ECCEEEEEe
Confidence 59999999 899999874
|
| >1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.8e-11 Score=97.19 Aligned_cols=72 Identities=19% Similarity=0.319 Sum_probs=61.3
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+||+++|+||++||++|+.+.|.|.+++++++++ +.++.|++|.+. .+++.|++
T Consensus 22 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~~-----------------------~~~~~~~v 75 (112)
T 1t00_A 22 NDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDK---IEIVKLNIDENP-----------------------GTAAKYGV 75 (112)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCC---eEEEEEEcCCCH-----------------------HHHHhCCC
Confidence 4789999999999999999999999999998654 888888887543 47889999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++ ++|+++.+.
T Consensus 76 ~~~Pt~~~~-~~G~~~~~~ 93 (112)
T 1t00_A 76 MSIPTLNVY-QGGEVAKTI 93 (112)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred CcccEEEEE-eCCEEEEEE
Confidence 999998887 689877543
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=99.15 E-value=4.6e-10 Score=111.87 Aligned_cols=185 Identities=18% Similarity=0.232 Sum_probs=108.2
Q ss_pred HHHHHHcCcccCCeEEEECC--CCCccccchhhHHhhcCCCCCCCChhhHHHHHHHHHHHhhhhhhhhhhccCCCcceec
Q 011791 175 EKLARYFELSTLPTLVIIGP--DGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVG 252 (477)
Q Consensus 175 ~~l~~~~~v~~~P~~~lid~--~G~i~~~~~~~~i~~~g~~a~P~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~p~f~l~ 252 (477)
..+++.|++.. |+++++.+ ++.+.+.. +++...+..+.+... .|. +..
T Consensus 72 ~~v~~~~~v~~-~~i~lfk~f~~~~~~~~g-------------~~~~~~i~~fi~~~~---------------~p~-v~~ 121 (361)
T 3uem_A 72 SDVFSKYQLDK-DGVVLFKKFDEGRNNFEG-------------EVTKENLLDFIKHNQ---------------LPL-VIE 121 (361)
T ss_dssp HHHHHHTTCSS-SEEEEEESSTTSEEECCS-------------CCCHHHHHHHHHHHS---------------SCS-EEE
T ss_pred HHHHHHhCCCC-CeEEEEEecCCCccccCC-------------cCCHHHHHHHHHHcC---------------CCc-cee
Confidence 56888999987 98888865 44443321 234554554443221 111 112
Q ss_pred cCCCcee-cccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCc
Q 011791 253 KNGGKVP-VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGD 331 (477)
Q Consensus 253 ~~g~~~~-l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~ 331 (477)
.+..++. +-.-..++++|+|+++||++|+.+.|.+.+++++++++ +.++.|+.+...
T Consensus 122 ~~~~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~---i~f~~vd~~~~~------------------- 179 (361)
T 3uem_A 122 FTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGK---ILFIFIDSDHTD------------------- 179 (361)
T ss_dssp CSTTTHHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTT---CEEEEECTTSGG-------------------
T ss_pred cCcccHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccCc---eEEEEecCChHH-------------------
Confidence 2222211 11112357899999999999999999999999999875 666666555222
Q ss_pred chhHHHHHhcCCCC--cceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCC----------chh
Q 011791 332 ARKASLSRKFKVSG--IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGW----------PEN 399 (477)
Q Consensus 332 d~~~~l~~~~~v~~--~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~----------~~~ 399 (477)
...+++.|||++ +|++++++.++..... . . ....++. +.|.+.++..+.+. |..
T Consensus 180 --~~~~~~~fgi~~~~~P~~~~~~~~~~~~ky-~-----~---~~~~~~~---~~l~~fi~~~l~g~~~~~~~s~~~p~~ 245 (361)
T 3uem_A 180 --NQRILEFFGLKKEECPAVRLITLEEEMTKY-K-----P---ESEELTA---ERITEFCHRFLEGKIKPHLMSQELPED 245 (361)
T ss_dssp --GHHHHHHTTCCTTTCSEEEEEECC--CCEE-C-----C---SSCCCCH---HHHHHHHHHHHTTCSCCCCBCCCCCTT
T ss_pred --HHHHHHHcCCCccCCccEEEEEcCCccccc-C-----C---CccccCH---HHHHHHHHHHhcCCCcccccCCCCCcc
Confidence 246889999988 9999999764432111 0 0 1123444 44555566655431 110
Q ss_pred -----hhc---------cccccceeeccCCceeccCCCCC
Q 011791 400 -----VKH---------ALHEHELVLDRCGVYSCDGCDEE 425 (477)
Q Consensus 400 -----~~~---------~~~~~~~~l~~~~~~~~~~C~~~ 425 (477)
+.. ...++..++.++.++||+.|+..
T Consensus 246 ~~~~~v~~l~~~~f~~~~~~~~k~~lv~f~a~wC~~C~~~ 285 (361)
T 3uem_A 246 WDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQL 285 (361)
T ss_dssp TTTSSSEEECTTTHHHHHTCTTCEEEEEEECTTCHHHHHH
T ss_pred cccCCcEEeecCchhhhcccCCCcEEEEEecCcCHhHHHH
Confidence 100 01134556667889999999753
|
| >1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-10 Score=97.81 Aligned_cols=74 Identities=12% Similarity=0.189 Sum_probs=60.3
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcC-CCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGK-GESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 182 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~-g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (477)
.+++++|+||++||++|+.+.|.+.++++++++. ..++.++.|..|.+ ..+++.|+
T Consensus 24 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----------------------~~l~~~~~ 80 (133)
T 1x5d_A 24 SEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVN-----------------------QVLASRYG 80 (133)
T ss_dssp SSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTC-----------------------CHHHHHHT
T ss_pred CCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCC-----------------------HHHHHhCC
Confidence 4789999999999999999999999999999731 11288888887744 24788999
Q ss_pred cccCCeEEEECCCCCcccc
Q 011791 183 LSTLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 183 v~~~P~~~lid~~G~i~~~ 201 (477)
|.++|+++++++ |+.+.+
T Consensus 81 v~~~Pt~~~~~~-g~~~~~ 98 (133)
T 1x5d_A 81 IRGFPTIKIFQK-GESPVD 98 (133)
T ss_dssp CCSSSEEEEEET-TEEEEE
T ss_pred CCeeCeEEEEeC-CCceEE
Confidence 999999999987 775543
|
| >1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=7.8e-11 Score=95.49 Aligned_cols=72 Identities=17% Similarity=0.287 Sum_probs=61.2
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.||+++|+||++||++|+.+.|.|.+++++++++ +.++.|+.|.+. .+++.|++
T Consensus 18 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~~-----------------------~~~~~~~v 71 (107)
T 1dby_A 18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK---LKCVKLNTDESP-----------------------NVASEYGI 71 (107)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-----------------------HHHHHHTC
T ss_pred CCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCc---eEEEEEECCCCH-----------------------HHHHHCCC
Confidence 3689999999999999999999999999998764 788888887543 47889999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++ ++|+++.+.
T Consensus 72 ~~~Pt~~~~-~~G~~~~~~ 89 (107)
T 1dby_A 72 RSIPTIMVF-KGGKKCETI 89 (107)
T ss_dssp CSSCEEEEE-SSSSEEEEE
T ss_pred CcCCEEEEE-eCCEEEEEE
Confidence 999998888 689887654
|
| >2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.4e-11 Score=105.74 Aligned_cols=118 Identities=15% Similarity=0.274 Sum_probs=90.7
Q ss_pred hccCcCCCceecCCC--CeEecCC-CCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEE-EEEEEcCCC--HH
Q 011791 81 VLTSHSRDFVISSDG--RKISVSD-LEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFE-IVLISLDDE--EE 153 (477)
Q Consensus 81 ~~g~~~p~fl~~~~g--~~v~ls~-l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~-vv~is~D~~--~~ 153 (477)
.+|..+|+|.+..+| +.+++++ ++||+++|+|+ ..|||.|..+++.+++.++++++.| ++ |++||.|+. ..
T Consensus 15 ~vGd~aPdf~l~~~g~~~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~g--v~~VigIS~D~~~~~~ 92 (171)
T 2xhf_A 15 KVGDIIPDVLVYEDVPSKSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEG--YHTIACIAVNDPFVMA 92 (171)
T ss_dssp CTTCBCCCCEEECSSTTCEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTT--CCEEEEEESSCHHHHH
T ss_pred cCcCCCCCeEEecCCCCcEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CCEEEEEeCCCHHHHH
Confidence 368999999664455 8999999 59999888887 5699999999999999999999988 85 999999964 23
Q ss_pred HHHHhhcCCCCccccCCchhHHHHHHHcCcc-----------cCCeEEEECCCCCccccch
Q 011791 154 SFKRDLGSMPWLALPFKDKSREKLARYFELS-----------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~i~~~~~ 203 (477)
.|.+...-. ..++...+...++++.||+. ....++||| +|+|++..+
T Consensus 93 ~w~~~~~~~--~~f~lLSD~~~~~a~ayGv~~~~~~~g~g~~~~R~tfvId-dG~V~~~~v 150 (171)
T 2xhf_A 93 AWGKTVDPE--HKIRMLADMHGEFTRALGTELDSSKMLGNNRSRRYAMLID-DNKIRSVST 150 (171)
T ss_dssp HHHHHHCTT--CCSEEEECTTSHHHHHHTCBCCCHHHHSSCCBCCEEEEEE-TTEEEEEEE
T ss_pred HHHHhcCCC--CCeEEEEeCCchHHHHhCCceeccccCCCcceEEEEEEEe-CCEEEEEEE
Confidence 455444321 13455555667789999873 245778888 999988764
|
| >2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.6e-11 Score=100.79 Aligned_cols=72 Identities=18% Similarity=0.342 Sum_probs=62.1
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++|+++|+||++||++|+.+.|.|.+++++++++ +.++.|++|.+. .+++.|++
T Consensus 39 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~~~~~-----------------------~l~~~~~v 92 (128)
T 2o8v_B 39 ADGAILVDFWAEWCGPAKMIAPILDEIADEYQGK---LTVAKLNIDQNP-----------------------GTAPKYGI 92 (128)
T ss_dssp CSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTT---EEEEEEETTTCC-----------------------TTSGGGTC
T ss_pred cCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---eEEEEEECCCCH-----------------------HHHHHcCC
Confidence 5799999999999999999999999999998754 889989887543 25678999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++ ++|+++.+.
T Consensus 93 ~~~Pt~~~~-~~G~~~~~~ 110 (128)
T 2o8v_B 93 RGIPTLLLF-KNGEVAATK 110 (128)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred CccCEEEEE-eCCEEEEEE
Confidence 999999999 899987643
|
| >1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A | Back alignment and structure |
|---|
Probab=99.14 E-value=6.5e-11 Score=98.34 Aligned_cols=72 Identities=22% Similarity=0.377 Sum_probs=61.6
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.||+++|+||++||++|+.+.|.|.++++++.+. +.++.|++|.+ ..+++.|++
T Consensus 30 ~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~---v~~~~vd~d~~-----------------------~~l~~~~~v 83 (119)
T 1w4v_A 30 SETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGK---VVMAKVDIDDH-----------------------TDLAIEYEV 83 (119)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTS---SEEEEEETTTT-----------------------HHHHHHTTC
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEeCCCC-----------------------HHHHHHcCC
Confidence 4789999999999999999999999999988653 78888887754 347889999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++ ++|+++.+.
T Consensus 84 ~~~Pt~~~~-~~G~~~~~~ 101 (119)
T 1w4v_A 84 SAVPTVLAM-KNGDVVDKF 101 (119)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred CcccEEEEE-eCCcEEEEE
Confidence 999999999 799887643
|
| >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A | Back alignment and structure |
|---|
Probab=99.13 E-value=5.9e-11 Score=103.36 Aligned_cols=71 Identities=13% Similarity=0.245 Sum_probs=60.9
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+||+++|+||++||++|+.+.|.|.++++++. + +.++.|.+|.+ ..+++.|+|
T Consensus 31 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~--v~~~~vd~~~~-----------------------~~l~~~~~v 83 (153)
T 2wz9_A 31 AKSLLVVHFWAPWAPQCAQMNEVMAELAKELP--Q--VSFVKLEAEGV-----------------------PEVSEKYEI 83 (153)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEETTTS-----------------------HHHHHHTTC
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC--C--eEEEEEECCCC-----------------------HHHHHHcCC
Confidence 47899999999999999999999999999873 2 78888887754 347889999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|++++++ +|+++.+.
T Consensus 84 ~~~Pt~~~~~-~G~~~~~~ 101 (153)
T 2wz9_A 84 SSVPTFLFFK-NSQKIDRL 101 (153)
T ss_dssp CSSSEEEEEE-TTEEEEEE
T ss_pred CCCCEEEEEE-CCEEEEEE
Confidence 9999999999 99887654
|
| >2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-10 Score=93.89 Aligned_cols=72 Identities=19% Similarity=0.391 Sum_probs=62.4
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++++++|+||++||++|+.+.|.+.++.+++++. +.++.|++|.+. .+++.|++
T Consensus 19 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~-----------------------~~~~~~~v 72 (107)
T 2i4a_A 19 ASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGK---VTVAKVNIDDNP-----------------------ETPNAYQV 72 (107)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTS---EEEEEEETTTCC-----------------------HHHHHTTC
T ss_pred CCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCc---EEEEEEECCCCH-----------------------HHHHhcCC
Confidence 5789999999999999999999999999999753 888888887543 37789999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++ ++|+++.+.
T Consensus 73 ~~~Pt~~~~-~~G~~~~~~ 90 (107)
T 2i4a_A 73 RSIPTLMLV-RDGKVIDKK 90 (107)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred CccCEEEEE-eCCEEEEEe
Confidence 999999999 899887643
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.2e-11 Score=102.52 Aligned_cols=75 Identities=17% Similarity=0.211 Sum_probs=56.9
Q ss_pred cCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHH
Q 011791 100 VSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 179 (477)
Q Consensus 100 ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 179 (477)
+++.+||+++|+|||+||++|+.+.|.|.++.+.+ + +.++.|..|.. ..+++
T Consensus 35 l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~---~--v~~~~vd~~~~-----------------------~~l~~ 86 (133)
T 3cxg_A 35 FSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY---Y--VTLVDIDVDIH-----------------------PKLND 86 (133)
T ss_dssp HTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE---E--CEEEEEETTTC-----------------------HHHHH
T ss_pred HHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc---C--EEEEEEeccch-----------------------HHHHH
Confidence 44567899999999999999999999988876655 2 56666665533 34788
Q ss_pred HcCcccCCeEEEE-CCCCC--ccccc
Q 011791 180 YFELSTLPTLVII-GPDGK--TLHSN 202 (477)
Q Consensus 180 ~~~v~~~P~~~li-d~~G~--i~~~~ 202 (477)
.|++.++|+++++ +++|+ ++.+.
T Consensus 87 ~~~v~~~Pt~~~~~~~~g~g~~~~~~ 112 (133)
T 3cxg_A 87 QHNIKALPTFEFYFNLNNEWVLVHTV 112 (133)
T ss_dssp HTTCCSSSEEEEEEEETTEEEEEEEE
T ss_pred hcCCCCCCEEEEEEecCCCeEEEEEE
Confidence 9999999999998 44555 66553
|
| >2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=9.6e-11 Score=99.88 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=60.2
Q ss_pred CCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 011791 103 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 182 (477)
Q Consensus 103 l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (477)
-++++++|+|||+||++|+.+.|.|.++++++++.+ +.++.|.+|... .+++.|+
T Consensus 24 ~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~~~~~-----------------------~~~~~~~ 78 (137)
T 2dj0_A 24 DKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTG--LNFGKVDVGRYT-----------------------DVSTRYK 78 (137)
T ss_dssp STTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSS--CEEEECCTTTCH-----------------------HHHHHTT
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCC--eEEEEEeCccCH-----------------------HHHHHcc
Confidence 345789999999999999999999999999997644 777777666442 3677888
Q ss_pred cc------cCCeEEEECCCCCccccc
Q 011791 183 LS------TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 183 v~------~~P~~~lid~~G~i~~~~ 202 (477)
+. ++|+++++ ++|+++.+.
T Consensus 79 v~~~~~~~~~Pt~~~~-~~G~~~~~~ 103 (137)
T 2dj0_A 79 VSTSPLTKQLPTLILF-QGGKEAMRR 103 (137)
T ss_dssp CCCCSSSSCSSEEEEE-SSSSEEEEE
T ss_pred CcccCCcCCCCEEEEE-ECCEEEEEe
Confidence 88 99999999 588877654
|
| >2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.13 E-value=8.3e-11 Score=99.48 Aligned_cols=83 Identities=13% Similarity=0.204 Sum_probs=61.8
Q ss_pred cCCCCeEecCCC-CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCC
Q 011791 92 SSDGRKISVSDL-EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFK 170 (477)
Q Consensus 92 ~~~g~~v~ls~l-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~ 170 (477)
..+++.+...-. ++++++|+||++||++|+.+.|.|.++++++++.+ ++.++.|..+...
T Consensus 11 ~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~-~~~~~~vd~~~~~------------------ 71 (133)
T 2dj3_A 11 VVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQK-DLVIAKMDATAND------------------ 71 (133)
T ss_dssp ECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSS-SEEEEEECTTTSC------------------
T ss_pred EEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCC-CEEEEEecCCcCH------------------
Confidence 344444443333 48999999999999999999999999999998642 3776666655331
Q ss_pred chhHHHHHHHcCcccCCeEEEECCCCCc
Q 011791 171 DKSREKLARYFELSTLPTLVIIGPDGKT 198 (477)
Q Consensus 171 ~~~~~~l~~~~~v~~~P~~~lid~~G~i 198 (477)
.+++.|+|.++|++++++.+|++
T Consensus 72 -----~~~~~~~v~~~Pt~~~~~~g~~~ 94 (133)
T 2dj3_A 72 -----ITNDQYKVEGFPTIYFAPSGDKK 94 (133)
T ss_dssp -----CCCSSCCCSSSSEEEEECTTCTT
T ss_pred -----HHHhhcCCCcCCEEEEEeCCCcc
Confidence 13457999999999999876654
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=8.2e-11 Score=95.56 Aligned_cols=71 Identities=11% Similarity=0.158 Sum_probs=59.7
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++|+++|+||++||++|+.+.|.+.++++++. + +.++.|++|.+ ..+++.|++
T Consensus 20 ~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~--~--~~~~~vd~~~~-----------------------~~~~~~~~v 72 (107)
T 1gh2_A 20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP--Q--AVFLEVDVHQC-----------------------QGTAATNNI 72 (107)
T ss_dssp TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT--T--SEEEEEETTTS-----------------------HHHHHHTTC
T ss_pred CCCEEEEEEECCCChhhHHHHHHHHHHHHHCC--C--cEEEEEECccC-----------------------HHHHHhcCC
Confidence 47899999999999999999999999999983 2 77888887754 347789999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++ ++|+.+.+.
T Consensus 73 ~~~Pt~~~~-~~G~~~~~~ 90 (107)
T 1gh2_A 73 SATPTFQFF-RNKVRIDQY 90 (107)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred CcccEEEEE-ECCeEEEEE
Confidence 999999988 688877643
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=6.9e-11 Score=113.95 Aligned_cols=72 Identities=21% Similarity=0.400 Sum_probs=62.4
Q ss_pred CCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 011791 103 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 182 (477)
Q Consensus 103 l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (477)
.+||+|+|+||++||+||+.+.|.+.+++++++++ +.++.|++|.+. .+++.|+
T Consensus 24 ~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~ 77 (287)
T 3qou_A 24 SMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQ---FILAKLDCDAEQ-----------------------MIAAQFG 77 (287)
T ss_dssp TTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSS---SEEEEEETTTCH-----------------------HHHHTTT
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEEeCccCH-----------------------HHHHHcC
Confidence 35899999999999999999999999999999864 788888887553 4788999
Q ss_pred cccCCeEEEECCCCCcccc
Q 011791 183 LSTLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 183 v~~~P~~~lid~~G~i~~~ 201 (477)
|.++||++++ ++|+++.+
T Consensus 78 v~~~Pt~~~~-~~G~~~~~ 95 (287)
T 3qou_A 78 LRAIPTVYLF-QNGQPVDG 95 (287)
T ss_dssp CCSSSEEEEE-ETTEEEEE
T ss_pred CCCCCeEEEE-ECCEEEEE
Confidence 9999999999 58887653
|
| >2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} | Back alignment and structure |
|---|
Probab=99.12 E-value=7.7e-11 Score=97.83 Aligned_cols=72 Identities=17% Similarity=0.207 Sum_probs=60.6
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.|++++|+||++||++|+.+.|.|.++++++ .+ +.++.|++|.+ ..+++.|++
T Consensus 22 ~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~--~~--v~~~~vd~~~~-----------------------~~~~~~~~i 74 (118)
T 2f51_A 22 APGLVLVDFFATWCGPCQRLGQILPSIAEAN--KD--VTFIKVDVDKN-----------------------GNAADAYGV 74 (118)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHC--TT--SEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHC--CC--eEEEEEECCCC-----------------------HHHHHhcCC
Confidence 4789999999999999999999999999988 23 78888888754 347889999
Q ss_pred ccCCeEEEECC---CCCccccc
Q 011791 184 STLPTLVIIGP---DGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~---~G~i~~~~ 202 (477)
.++|++++++. +|+++.+.
T Consensus 75 ~~~Pt~~~~~~~~~~G~~~~~~ 96 (118)
T 2f51_A 75 SSIPALFFVKKEGNEIKTLDQF 96 (118)
T ss_dssp CSSSEEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEEeCCCCcceEEEee
Confidence 99999999975 37776654
|
| >2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.12 E-value=6.9e-11 Score=99.82 Aligned_cols=71 Identities=20% Similarity=0.344 Sum_probs=62.2
Q ss_pred CEEEEEEecCCC--ccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 106 KTIGLYFSMSSY--KASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 106 k~vll~F~a~wC--~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++|+|+|||+|| +||+...|.|.++.++|.++ +.++-|++|.+ ..+++.|||
T Consensus 34 ~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~---v~~~KVdvDe~-----------------------~~la~~ygV 87 (137)
T 2qsi_A 34 KIVVLFFRGDAVRFPEAADLAVVLPELINAFPGR---LVAAEVAAEAE-----------------------RGLMARFGV 87 (137)
T ss_dssp SEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTT---EEEEEECGGGH-----------------------HHHHHHHTC
T ss_pred CcEEEEEeCCccCCCchhhHHhHHHHHHHHccCC---cEEEEEECCCC-----------------------HHHHHHcCC
Confidence 489999999999 99999999999999999765 88888887744 458899999
Q ss_pred ccCCeEEEECCCCCccccch
Q 011791 184 STLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~~ 203 (477)
+++||++++ ++|+.+.+..
T Consensus 88 ~siPTlilF-kdG~~v~~~v 106 (137)
T 2qsi_A 88 AVCPSLAVV-QPERTLGVIA 106 (137)
T ss_dssp CSSSEEEEE-ECCEEEEEEE
T ss_pred ccCCEEEEE-ECCEEEEEEe
Confidence 999999999 5999887764
|
| >1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.7e-10 Score=86.50 Aligned_cols=62 Identities=15% Similarity=0.194 Sum_probs=51.5
Q ss_pred EEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcc
Q 011791 268 ILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIP 347 (477)
Q Consensus 268 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P 347 (477)
+.|+||++||++|+.+.|.+.+++++++.+ +.++.|+ +. .+++.|+|+++|
T Consensus 2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~~---~~~~~v~---~~-----------------------~~~~~~~v~~~P 52 (77)
T 1ilo_A 2 MKIQIYGTGCANCQMLEKNAREAVKELGID---AEFEKIK---EM-----------------------DQILEAGLTALP 52 (77)
T ss_dssp EEEEEECSSSSTTHHHHHHHHHHHHHTTCC---EEEEEEC---SH-----------------------HHHHHHTCSSSS
T ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHcCCc---eEEEEec---CH-----------------------HHHHHCCCCcCC
Confidence 458999999999999999999999888643 6666654 22 578899999999
Q ss_pred eEEEECCCCcEEEe
Q 011791 348 MLVAIGPSGRTITK 361 (477)
Q Consensus 348 t~~lid~~G~iv~~ 361 (477)
|+++ +|+++.+
T Consensus 53 t~~~---~G~~~~~ 63 (77)
T 1ilo_A 53 GLAV---DGELKIM 63 (77)
T ss_dssp CEEE---TTEEEEC
T ss_pred EEEE---CCEEEEc
Confidence 9998 8998776
|
| >3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-10 Score=95.42 Aligned_cols=72 Identities=24% Similarity=0.392 Sum_probs=61.2
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++++++|+||++||++|+.+.|.+.++.+.++++ +.++.|.+|... .+++.|++
T Consensus 21 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---v~~~~vd~~~~~-----------------------~l~~~~~v 74 (111)
T 3gnj_A 21 EGKACLVMFSRKNCHVCQKVTPVLEELRLNYEES---FGFYYVDVEEEK-----------------------TLFQRFSL 74 (111)
T ss_dssp SCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred cCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCcCh-----------------------hHHHhcCC
Confidence 4688999999999999999999999999998763 788888887543 47889999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++ ++|+.+.+.
T Consensus 75 ~~~Pt~~~~-~~g~~~~~~ 92 (111)
T 3gnj_A 75 KGVPQILYF-KDGEYKGKM 92 (111)
T ss_dssp CSSCEEEEE-ETTEEEEEE
T ss_pred CcCCEEEEE-ECCEEEEEE
Confidence 999999999 588876543
|
| >1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-10 Score=95.51 Aligned_cols=72 Identities=14% Similarity=0.298 Sum_probs=62.6
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+|++++|+||++||++|+.+.|.|.++.+.++++ +.++.|++|.+. .+++.|++
T Consensus 24 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---v~~~~v~~~~~~-----------------------~~~~~~~v 77 (115)
T 1thx_A 24 AEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR---LKVVKLEIDPNP-----------------------TTVKKYKV 77 (115)
T ss_dssp CSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEESTTCH-----------------------HHHHHTTC
T ss_pred CCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCc---EEEEEEEcCCCH-----------------------HHHHHcCC
Confidence 5789999999999999999999999999998754 888888887553 47889999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++ ++|+++.+.
T Consensus 78 ~~~Pt~~~~-~~G~~~~~~ 95 (115)
T 1thx_A 78 EGVPALRLV-KGEQILDST 95 (115)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred CceeEEEEE-cCCEEEEEe
Confidence 999999999 899987653
|
| >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.12 E-value=9.2e-11 Score=102.44 Aligned_cols=72 Identities=13% Similarity=0.275 Sum_probs=62.1
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.+++++|+||++||++|+.+.|.|.+++++++++ +.++.|++|.+. .+++.|+|
T Consensus 63 ~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~---v~~~~vd~~~~~-----------------------~l~~~~~i 116 (155)
T 2ppt_A 63 DDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQ---VRLAKIDTQAHP-----------------------AVAGRHRI 116 (155)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTST-----------------------HHHHHTTC
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCC---EEEEEEeCCccH-----------------------HHHHHcCC
Confidence 5789999999999999999999999999999764 888888887542 37889999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++ ++|+++.+.
T Consensus 117 ~~~Pt~~~~-~~G~~~~~~ 134 (155)
T 2ppt_A 117 QGIPAFILF-HKGRELARA 134 (155)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred CcCCEEEEE-eCCeEEEEe
Confidence 999999999 689887653
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=99.11 E-value=2e-10 Score=119.89 Aligned_cols=104 Identities=18% Similarity=0.311 Sum_probs=76.1
Q ss_pred ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCc
Q 011791 252 GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGD 331 (477)
Q Consensus 252 ~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~ 331 (477)
.++...+.-.--.+++++|+|||+||++|+++.|.+.++++++++. ++.++.|+++...
T Consensus 18 ~l~~~~f~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~--~v~~~~vd~~~~~------------------- 76 (504)
T 2b5e_A 18 KLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK--NITLAQIDCTENQ------------------- 76 (504)
T ss_dssp ECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT--TCEEEEEETTTCH-------------------
T ss_pred ECCHHHHHHHHhcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccC--CeEEEEEECCCCH-------------------
Confidence 4455544332234899999999999999999999999999999764 5888888777554
Q ss_pred chhHHHHHhcCCCCcceEEEECCCCcE--EEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcC
Q 011791 332 ARKASLSRKFKVSGIPMLVAIGPSGRT--ITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKG 395 (477)
Q Consensus 332 d~~~~l~~~~~v~~~Pt~~lid~~G~i--v~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 395 (477)
.+++.|+|+++||++++ ++|+. +.. +.| +.+ .+.|.+.+.+.+..
T Consensus 77 ----~l~~~~~v~~~Pt~~~~-~~g~~~~~~~-------~~G----~~~---~~~l~~~l~~~~~~ 123 (504)
T 2b5e_A 77 ----DLCMEHNIPGFPSLKIF-KNSDVNNSID-------YEG----PRT---AEAIVQFMIKQSQP 123 (504)
T ss_dssp ----HHHHHTTCCSSSEEEEE-ETTCTTCEEE-------CCS----CCS---HHHHHHHHHHHTSC
T ss_pred ----HHHHhcCCCcCCEEEEE-eCCcccccee-------ecC----CCC---HHHHHHHHHHhcCC
Confidence 68999999999999999 56763 333 222 122 35667777766643
|
| >2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1e-10 Score=96.54 Aligned_cols=71 Identities=17% Similarity=0.320 Sum_probs=59.8
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+||+++|+||++||++|+.+.|.|.++++++++ +.++.|++|.+. .+++.|++
T Consensus 29 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~----v~~~~vd~~~~~-----------------------~l~~~~~v 81 (114)
T 2oe3_A 29 QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD----VRFVKCDVDESP-----------------------DIAKECEV 81 (114)
T ss_dssp HCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT----SEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC----CEEEEEECCCCH-----------------------HHHHHCCC
Confidence 468999999999999999999999999998854 678888877542 47889999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++ ++|+++.+.
T Consensus 82 ~~~Pt~~~~-~~G~~~~~~ 99 (114)
T 2oe3_A 82 TAMPTFVLG-KDGQLIGKI 99 (114)
T ss_dssp CSBSEEEEE-ETTEEEEEE
T ss_pred CcccEEEEE-eCCeEEEEE
Confidence 999998877 789887654
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.71 E-value=7.3e-12 Score=105.71 Aligned_cols=84 Identities=20% Similarity=0.375 Sum_probs=65.9
Q ss_pred CCeEecCCCCCCEEEEEEecCCCccchhhHHHH---HHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCc
Q 011791 95 GRKISVSDLEGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKD 171 (477)
Q Consensus 95 g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~ 171 (477)
.+.+.++..+||+++|+|||+||++|+.+.|.+ .++.+.+++. +.++.|++|.+.
T Consensus 9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~------------------- 66 (130)
T 2lst_A 9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEAR---FVVASVSVDTPE------------------- 66 (130)
Confidence 556777778899999999999999999999998 7888777653 677777665321
Q ss_pred hhHHHHHHHcCcccCCeEEEECC-CCCc--cccc
Q 011791 172 KSREKLARYFELSTLPTLVIIGP-DGKT--LHSN 202 (477)
Q Consensus 172 ~~~~~l~~~~~v~~~P~~~lid~-~G~i--~~~~ 202 (477)
...+++.|++.++|+++++|+ +|++ +.+.
T Consensus 67 --~~~~~~~~~v~~~Pt~~~~d~~~G~~~~~~~~ 98 (130)
T 2lst_A 67 --GQELARRYRVPGTPTFVFLVPKAGAWEEVGRL 98 (130)
Confidence 245788999999999999996 5887 5443
|
| >2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 | Back alignment and structure |
|---|
Probab=99.11 E-value=3.8e-11 Score=110.89 Aligned_cols=70 Identities=16% Similarity=0.193 Sum_probs=59.1
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
+|++|||+||++||++|+.+.|.|.+++++|. ++.++.|+++ . ..++..|+|
T Consensus 119 ~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~----~v~f~~vd~~-~-----------------------~~l~~~~~i 170 (217)
T 2trc_P 119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP----MVKFCKIRAS-N-----------------------TGAGDRFSS 170 (217)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT----TSEEEEEEHH-H-----------------------HTCSTTSCG
T ss_pred CCcEEEEEEECCCCccHHHHHHHHHHHHHHCC----CeEEEEEECC-c-----------------------HHHHHHCCC
Confidence 46999999999999999999999999988874 4777777765 2 146778999
Q ss_pred CCcceEEEECCCCcEEEec
Q 011791 344 SGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~~ 362 (477)
.++||++++ ++|+++.+.
T Consensus 171 ~~~PTl~~~-~~G~~v~~~ 188 (217)
T 2trc_P 171 DVLPTLLVY-KGGELISNF 188 (217)
T ss_dssp GGCSEEEEE-ETTEEEEEE
T ss_pred CCCCEEEEE-ECCEEEEEE
Confidence 999999999 699998763
|
| >1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-10 Score=97.60 Aligned_cols=68 Identities=21% Similarity=0.261 Sum_probs=58.1
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+++ ++|+||++||++|+.+.|.|.++++++++.+ +.++.|.+|.+. .+++.|++
T Consensus 22 ~~~-vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~--v~~~~vd~~~~~-----------------------~~~~~~~v 75 (126)
T 1x5e_A 22 EGD-WMIEFYAPWCPACQNLQPEWESFAEWGEDLE--VNIAKVDVTEQP-----------------------GLSGRFII 75 (126)
T ss_dssp SSE-EEEEEECSSCHHHHHHHHHHHHHHHHHGGGT--CEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCC-EEEEEECCCCHHHHHHhHHHHHHHHHhccCC--eEEEEEECcCCH-----------------------HHHHHcCC
Confidence 444 8999999999999999999999999998644 888888877543 37889999
Q ss_pred ccCCeEEEECCCCCc
Q 011791 184 STLPTLVIIGPDGKT 198 (477)
Q Consensus 184 ~~~P~~~lid~~G~i 198 (477)
.++|+++++ ++|++
T Consensus 76 ~~~Pt~~~~-~~G~~ 89 (126)
T 1x5e_A 76 NALPTIYHC-KDGEF 89 (126)
T ss_dssp CSSSEEEEE-ETTEE
T ss_pred cccCEEEEE-eCCeE
Confidence 999999999 78885
|
| >1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-10 Score=94.90 Aligned_cols=71 Identities=15% Similarity=0.228 Sum_probs=60.1
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
||+++|+||++||++|+.+.|.|.++++.+++ + +.++.|+.|.+ ..+++.|++.
T Consensus 24 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~--~~~~~vd~~~~-----------------------~~~~~~~~v~ 77 (112)
T 1ep7_A 24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYAG-K--VIFLKVDVDAV-----------------------AAVAEAAGIT 77 (112)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-T--SEEEEEETTTT-----------------------HHHHHHHTCC
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC-C--eEEEEEECCch-----------------------HHHHHHcCCC
Confidence 68899999999999999999999999999875 2 78888887753 3478899999
Q ss_pred cCCeEEEECCCCCccccc
Q 011791 185 TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~ 202 (477)
++|+++++ ++|+++.+.
T Consensus 78 ~~Pt~~~~-~~G~~~~~~ 94 (112)
T 1ep7_A 78 AMPTFHVY-KDGVKADDL 94 (112)
T ss_dssp BSSEEEEE-ETTEEEEEE
T ss_pred cccEEEEE-ECCeEEEEE
Confidence 99998777 689887653
|
| >3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.2e-10 Score=96.83 Aligned_cols=69 Identities=10% Similarity=0.113 Sum_probs=59.5
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.+|+++|+||++||++|+.+.|.|.++++++++. +.++.|.+|... .+++.|++
T Consensus 20 ~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~v 73 (122)
T 3aps_A 20 GKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGK---VRAGKVDCQAYP-----------------------QTCQKAGI 73 (122)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEeCcCCH-----------------------HHHHHcCC
Confidence 4689999999999999999999999999999763 888888887543 47889999
Q ss_pred ccCCeEEEECCCCCc
Q 011791 184 STLPTLVIIGPDGKT 198 (477)
Q Consensus 184 ~~~P~~~lid~~G~i 198 (477)
.++|++++++.+|.+
T Consensus 74 ~~~Pt~~~~~~~~~~ 88 (122)
T 3aps_A 74 KAYPSVKLYQYERAK 88 (122)
T ss_dssp CSSSEEEEEEEEGGG
T ss_pred CccceEEEEeCCCcc
Confidence 999999999877763
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... | Back alignment and structure |
|---|
Probab=99.09 E-value=1e-10 Score=94.35 Aligned_cols=71 Identities=18% Similarity=0.255 Sum_probs=60.0
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++|+++|+||++||++|+.+.|.+.++.+++++ +.++.|+.|.. ..+++.|++
T Consensus 19 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~----~~~~~vd~~~~-----------------------~~~~~~~~v 71 (105)
T 3m9j_A 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDDC-----------------------QDVASESEV 71 (105)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT----SEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHHccC----eEEEEEEhhhh-----------------------HHHHHHcCC
Confidence 578999999999999999999999999998854 67777877654 347889999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++ ++|+.+.+.
T Consensus 72 ~~~Pt~~~~-~~g~~~~~~ 89 (105)
T 3m9j_A 72 KSMPTFQFF-KKGQKVGEF 89 (105)
T ss_dssp CBSSEEEEE-ETTEEEEEE
T ss_pred CcCcEEEEE-ECCeEEEEE
Confidence 999999999 678876654
|
| >3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.2e-10 Score=98.03 Aligned_cols=72 Identities=13% Similarity=0.163 Sum_probs=61.6
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.+++++|+||++||++|+.+.|.|.+++++++++ +.++.|.+|.+. .+++.|+|
T Consensus 23 ~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~~-----------------------~l~~~~~v 76 (140)
T 3hz4_A 23 SKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSS---AVFGRINIATNP-----------------------WTAEKYGV 76 (140)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEETTTCH-----------------------HHHHHHTC
T ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCcCH-----------------------hHHHHCCC
Confidence 3789999999999999999999999999999874 788888877553 47889999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++ ++|+++.+.
T Consensus 77 ~~~Pt~~~~-~~G~~~~~~ 94 (140)
T 3hz4_A 77 QGTPTFKFF-CHGRPVWEQ 94 (140)
T ss_dssp CEESEEEEE-ETTEEEEEE
T ss_pred CcCCEEEEE-eCCcEEEEE
Confidence 999999988 688876543
|
| >3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.2e-10 Score=118.47 Aligned_cols=70 Identities=16% Similarity=0.276 Sum_probs=59.2
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCC-----cEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHH
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNE-----SLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 339 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~-----~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~ 339 (477)
+|++||+|||+||++|+.+.|.+.+++++++.+.. .+.++.|++|... .+++
T Consensus 42 ~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~-----------------------~la~ 98 (470)
T 3qcp_A 42 LCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEV-----------------------DLCR 98 (470)
T ss_dssp GSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCH-----------------------HHHH
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCH-----------------------HHHH
Confidence 58999999999999999999999999999874321 4888888887554 6899
Q ss_pred hcCCCCcceEEEECCCCc
Q 011791 340 KFKVSGIPMLVAIGPSGR 357 (477)
Q Consensus 340 ~~~v~~~Pt~~lid~~G~ 357 (477)
.|+|.++||+++|+++|.
T Consensus 99 ~y~V~~~PTlilf~~gg~ 116 (470)
T 3qcp_A 99 KYDINFVPRLFFFYPRDS 116 (470)
T ss_dssp HTTCCSSCEEEEEEESSC
T ss_pred HcCCCccCeEEEEECCCc
Confidence 999999999999976553
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A | Back alignment and structure |
|---|
Probab=99.09 E-value=8.4e-11 Score=100.39 Aligned_cols=72 Identities=21% Similarity=0.392 Sum_probs=61.6
Q ss_pred CCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 011791 103 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 182 (477)
Q Consensus 103 l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (477)
.+||+++|+||++||++|+.+.|.|.+++++++ + +.++.|++|.+ ..+++.|+
T Consensus 44 ~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--~--v~~~~v~~~~~-----------------------~~~~~~~~ 96 (139)
T 3d22_A 44 RDGKIVLANFSARWCGPSRQIAPYYIELSENYP--S--LMFLVIDVDEL-----------------------SDFSASWE 96 (139)
T ss_dssp HHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEETTTS-----------------------HHHHHHTT
T ss_pred hcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--C--CEEEEEeCccc-----------------------HHHHHHcC
Confidence 458999999999999999999999999999884 3 78888888754 34788999
Q ss_pred cccCCeEEEECCCCCccccc
Q 011791 183 LSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 183 v~~~P~~~lid~~G~i~~~~ 202 (477)
+.++|+++++ ++|+++.+.
T Consensus 97 v~~~Pt~~~~-~~G~~~~~~ 115 (139)
T 3d22_A 97 IKATPTFFFL-RDGQQVDKL 115 (139)
T ss_dssp CCEESEEEEE-ETTEEEEEE
T ss_pred CCcccEEEEE-cCCeEEEEE
Confidence 9999999888 799987654
|
| >3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.5e-10 Score=94.27 Aligned_cols=74 Identities=15% Similarity=0.188 Sum_probs=60.7
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++++|+||++||++|+.+.|.+.++.+++.....++.++.|+.|... .+++.|++.
T Consensus 21 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-----------------------~l~~~~~v~ 77 (111)
T 3uvt_A 21 EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAER-----------------------NICSKYSVR 77 (111)
T ss_dssp SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCH-----------------------HHHHHTTCC
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccH-----------------------hHHHhcCCC
Confidence 689999999999999999999999999887655334888888877553 378899999
Q ss_pred cCCeEEEECCCCCccccc
Q 011791 185 TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~ 202 (477)
++|+++++ ++|+++.+.
T Consensus 78 ~~Pt~~~~-~~g~~~~~~ 94 (111)
T 3uvt_A 78 GYPTLLLF-RGGKKVSEH 94 (111)
T ss_dssp SSSEEEEE-ETTEEEEEE
T ss_pred cccEEEEE-eCCcEEEec
Confidence 99999888 678776543
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A | Back alignment and structure |
|---|
Probab=99.09 E-value=2.9e-10 Score=91.72 Aligned_cols=72 Identities=22% Similarity=0.425 Sum_probs=60.6
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++++++|+||++||++|+.+.|.+.++.++++.. +.++.|+.|.+ ..+++.|++
T Consensus 19 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~-----------------------~~~~~~~~v 72 (106)
T 1xwb_A 19 SGKLVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDVDEC-----------------------EDIAMEYNI 72 (106)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred CCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCC---eEEEEEeccch-----------------------HHHHHHcCC
Confidence 5789999999999999999999999999988632 88888888744 347889999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++ ++|+++.+.
T Consensus 73 ~~~Pt~~~~-~~G~~~~~~ 90 (106)
T 1xwb_A 73 SSMPTFVFL-KNGVKVEEF 90 (106)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred CcccEEEEE-cCCcEEEEE
Confidence 999998777 588876654
|
| >1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.1e-10 Score=104.55 Aligned_cols=116 Identities=12% Similarity=0.178 Sum_probs=87.5
Q ss_pred ccCcCCCcee-c--C---------CC----CeEecCC-CCCCEEEEEEe-cCCCccch-hhHHHHHHHHHHH-hcCCCcE
Q 011791 82 LTSHSRDFVI-S--S---------DG----RKISVSD-LEGKTIGLYFS-MSSYKASA-EFTPRLVEVYEKL-KGKGESF 141 (477)
Q Consensus 82 ~g~~~p~fl~-~--~---------~g----~~v~ls~-l~gk~vll~F~-a~wC~~C~-~~~p~l~~l~~~~-~~~g~~~ 141 (477)
+|..+|+|.+ + . +| +.+++++ ++||+++|+|+ +.|||.|. .+++.+++.++++ ++.| +
T Consensus 3 vGd~aPdf~l~~~~~~~~~~~~~~~G~~~~~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g--~ 80 (182)
T 1xiy_A 3 ENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENN--F 80 (182)
T ss_dssp TTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSC--C
T ss_pred CCCCCCCeEEEcccccccccccccCCCccceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCC--C
Confidence 5889999965 4 3 67 7999998 69998888765 67999999 9999999999999 9888 8
Q ss_pred E-EEEEEcCCC--HHHHHHhhcCCCCccccCCchhHHHHHHHcCcc-----------cCCeEEEECCCCCccccch
Q 011791 142 E-IVLISLDDE--EESFKRDLGSMPWLALPFKDKSREKLARYFELS-----------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 142 ~-vv~is~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~i~~~~~ 203 (477)
+ |++||.|.. ...|.+... .. .++...+....+++.||+. .....+||| +|+|++...
T Consensus 81 ~~V~gvS~D~~~~~~~~~~~~~-~~--~f~lLsD~~~~~a~~yGv~~~~~~~G~g~~~~R~tfvId-dG~V~~~~v 152 (182)
T 1xiy_A 81 DDIYCITNNDIYVLKSWFKSMD-IK--KIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMFQ 152 (182)
T ss_dssp SEEEEEESSCHHHHHHHHHHTT-CC--SSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEEE
T ss_pred cEEEEEeCCCHHHHHHHHHHcC-CC--CceEEEeCchHHHHHhCCceeccccCCCCceEEEEEEEc-CCEEEEEEE
Confidence 4 999999964 234443332 11 3555555667889999972 256788998 999988764
|
| >2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A | Back alignment and structure |
|---|
Probab=99.07 E-value=2.8e-10 Score=92.16 Aligned_cols=72 Identities=18% Similarity=0.340 Sum_probs=61.7
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++++++|+||++||++|+.+.|.|.++.+.++++ +.++.|+.|.+. .+++.|++
T Consensus 17 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~~-----------------------~~~~~~~v 70 (109)
T 2yzu_A 17 QHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGK---LLVAKLDVDENP-----------------------KTAMRYRV 70 (109)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTT---BEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCc---eEEEEEECCCCH-----------------------hHHHhCCC
Confidence 4789999999999999999999999999998753 888888887543 47889999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++ ++|+++.+.
T Consensus 71 ~~~Pt~~~~-~~g~~~~~~ 88 (109)
T 2yzu_A 71 MSIPTVILF-KDGQPVEVL 88 (109)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred CcCCEEEEE-eCCcEeeeE
Confidence 999999999 789877543
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=99.07 E-value=3.6e-10 Score=117.21 Aligned_cols=90 Identities=22% Similarity=0.372 Sum_probs=71.3
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|+|||+||++|+++.|.+.+++++++++ +.++.|+++... .+++.|+|+
T Consensus 21 ~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~---v~~~~vd~~~~~-----------------------~l~~~~~v~ 74 (481)
T 3f8u_A 21 AGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGI---VPLAKVDCTANT-----------------------NTCNKYGVS 74 (481)
T ss_dssp SSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CCEEEEETTTCH-----------------------HHHHHTTCC
T ss_pred CCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCc---eEEEEEECCCCH-----------------------HHHHhcCCC
Confidence 489999999999999999999999999999865 667777776543 689999999
Q ss_pred CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcC
Q 011791 345 GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKG 395 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 395 (477)
++||++++ ++|+.+.. +.| +.+ .+.|.+.+.+.+..
T Consensus 75 ~~Ptl~~~-~~g~~~~~-------~~G----~~~---~~~l~~~~~~~~~~ 110 (481)
T 3f8u_A 75 GYPTLKIF-RDGEEAGA-------YDG----PRT---ADGIVSHLKKQAGP 110 (481)
T ss_dssp EESEEEEE-ETTEEEEE-------CCS----CSS---HHHHHHHHHHHTSC
T ss_pred CCCEEEEE-eCCceeee-------ecC----ccC---HHHHHHHHHhhccc
Confidence 99999999 78876655 223 222 35677777776654
|
| >1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C | Back alignment and structure |
|---|
Probab=99.07 E-value=2.5e-10 Score=91.95 Aligned_cols=72 Identities=15% Similarity=0.291 Sum_probs=60.8
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.+++++|+||++||++|+.+.|.+.+++++++++ +.++.|+.|.+ ..+++.|++
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~-----------------------~~~~~~~~v 70 (105)
T 1fb6_A 17 SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLNTDEA-----------------------PGIATQYNI 70 (105)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred CCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCc---eEEEEEcCcch-----------------------HHHHHhCCC
Confidence 4689999999999999999999999999998764 78888887754 347889999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++ ++|+++.+.
T Consensus 71 ~~~Pt~~~~-~~g~~~~~~ 88 (105)
T 1fb6_A 71 RSIPTVLFF-KNGERKESI 88 (105)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred CcccEEEEE-eCCeEEEEE
Confidence 999998887 588877643
|
| >1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.9e-10 Score=96.52 Aligned_cols=71 Identities=14% Similarity=0.214 Sum_probs=60.1
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++++++|+||++||++|+.+.|.|.++++++. + +.++.|++|.+ ..+++.|++
T Consensus 36 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~--v~~~~vd~d~~-----------------------~~l~~~~~v 88 (125)
T 1r26_A 36 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP--T--VKFAKVDADNN-----------------------SEIVSKCRV 88 (125)
T ss_dssp SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT--T--SEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC--C--CEEEEEECCCC-----------------------HHHHHHcCC
Confidence 57899999999999999999999999999883 2 78888888754 347889999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++ ++|+++.+.
T Consensus 89 ~~~Pt~~i~-~~G~~~~~~ 106 (125)
T 1r26_A 89 LQLPTFIIA-RSGKMLGHV 106 (125)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred CcccEEEEE-eCCeEEEEE
Confidence 999998877 789877543
|
| >3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A | Back alignment and structure |
|---|
Probab=99.06 E-value=5.5e-11 Score=103.10 Aligned_cols=96 Identities=9% Similarity=0.162 Sum_probs=66.2
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHH--HHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVY--EKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 181 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~--~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (477)
+||+|+|+|||+||+||+.+.|.+.+.. ..+.+. .++.|.+|.+.. .+...|
T Consensus 43 ~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~----~fv~V~vD~e~~----------------------~~~~~~ 96 (151)
T 3ph9_A 43 SKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQN----KFIMLNLMHETT----------------------DKNLSP 96 (151)
T ss_dssp HTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHH----TCEEEEESSCCS----------------------CGGGCT
T ss_pred cCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhc----CeEEEEecCCch----------------------hhHhhc
Confidence 5799999999999999999999887532 222221 256666663211 013467
Q ss_pred CcccCCeEEEECCCCCccccchhhHHhhcCCCCCCCChhhHHHHHHHH
Q 011791 182 ELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQ 229 (477)
Q Consensus 182 ~v~~~P~~~lid~~G~i~~~~~~~~i~~~g~~a~P~~~~~~~~l~~~~ 229 (477)
++.++|++++++++|+++.+..+ .++...|++.+..+..+.+..
T Consensus 97 ~v~~~PT~~f~~~~G~~v~~~~G----~~~~~~~~~~~~~~~~ll~~~ 140 (151)
T 3ph9_A 97 DGQYVPRIMFVDPSLTVRADIAG----RYSNRLYTYEPRDLPLLIENM 140 (151)
T ss_dssp TCCCSSEEEEECTTSCBCTTCCC----SCTTSTTCCCGGGHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCEEEEEeC----CcCCcccccchhhHHHHHHHH
Confidence 88999999999999999886542 233455777777766665543
|
| >1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-10 Score=115.70 Aligned_cols=69 Identities=14% Similarity=0.250 Sum_probs=58.6
Q ss_pred CCCEEEEEEeCCCChhhHhHhHH-------HHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHH
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPK-------LIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKAS 336 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~-------l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 336 (477)
.+++++|+|||+||+ |+.+.|. ++++++.+++. ++.++.|+++... .
T Consensus 27 ~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~--~v~~~~Vd~~~~~-----------------------~ 80 (350)
T 1sji_A 27 KYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHK--DIGFVMVDAKKEA-----------------------K 80 (350)
T ss_dssp TCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGS--SEEEEEEETTTTH-----------------------H
T ss_pred hCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhc--CcEEEEEeCCCCH-----------------------H
Confidence 478999999999999 9999998 88888888764 5888878777543 6
Q ss_pred HHHhcCCCCcceEEEECCCCcEE
Q 011791 337 LSRKFKVSGIPMLVAIGPSGRTI 359 (477)
Q Consensus 337 l~~~~~v~~~Pt~~lid~~G~iv 359 (477)
+++.|+|+++||++++ ++|++.
T Consensus 81 l~~~~~v~~~Pt~~~~-~~g~~~ 102 (350)
T 1sji_A 81 LAKKLGFDEEGSLYVL-KGDRTI 102 (350)
T ss_dssp HHHHHTCCSTTEEEEE-ETTEEE
T ss_pred HHHhcCCCccceEEEE-ECCcEE
Confidence 8999999999999999 788854
|
| >2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.4e-10 Score=95.07 Aligned_cols=71 Identities=15% Similarity=0.317 Sum_probs=59.8
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++|+++|+||++||++|+.+.|.|.++++++++ +.++.|++|.+ ..+++.|++
T Consensus 33 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----~~~~~vd~~~~-----------------------~~~~~~~~v 85 (122)
T 2vlu_A 33 AKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN----AVFLKVDVDEL-----------------------KPIAEQFSV 85 (122)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC----cEEEEEECCCC-----------------------HHHHHHcCC
Confidence 478999999999999999999999999988764 67888887754 347889999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++ ++|+++.+.
T Consensus 86 ~~~Pt~~~~-~~G~~~~~~ 103 (122)
T 2vlu_A 86 EAMPTFLFM-KEGDVKDRV 103 (122)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred CcccEEEEE-eCCEEEEEE
Confidence 999998877 789887544
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=2.5e-10 Score=94.51 Aligned_cols=76 Identities=17% Similarity=0.273 Sum_probs=59.0
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+|++++|+|||+||++|+.+.|.|.+++++++. .++++.++.... .+....+++.|+|
T Consensus 28 ~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~-----~v~~~~~~~~~~-----------------~~~~~~~~~~~~i 85 (118)
T 1zma_A 28 KKETATFFIGRKTCPYCRKFAGTLSGVVAETKA-----HIYFINSEEPSQ-----------------LNDLQAFRSRYGI 85 (118)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC-----CCEEEETTCGGG-----------------HHHHHHHHHHHTC
T ss_pred CCCeEEEEEECCCCccHHHHHHHHHHHHHhcCC-----eEEEEECCCcCc-----------------HHHHHHHHHHcCC
Confidence 468899999999999999999999999988753 366777764321 1123467889999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++. +|+++.+.
T Consensus 86 ~~~Pt~~~~~-~G~~~~~~ 103 (118)
T 1zma_A 86 PTVPGFVHIT-DGQINVRC 103 (118)
T ss_dssp CSSCEEEEEE-TTEEEEEC
T ss_pred CCCCeEEEEE-CCEEEEEe
Confidence 9999999995 88876543
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.7e-10 Score=91.59 Aligned_cols=72 Identities=21% Similarity=0.386 Sum_probs=60.2
Q ss_pred CCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 011791 103 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 182 (477)
Q Consensus 103 l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (477)
.+||+++|+||++||++|+.+.|.+.+++++++ + +.++.|+.|.. ..+++.|+
T Consensus 17 ~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~--~--~~~~~v~~~~~-----------------------~~~~~~~~ 69 (104)
T 2vim_A 17 NKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP--E--VEFAKVDVDQN-----------------------EEAAAKYS 69 (104)
T ss_dssp TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEETTTC-----------------------HHHHHHTT
T ss_pred cCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC--C--CEEEEEeccCC-----------------------HHHHHHcC
Confidence 357899999999999999999999999999885 3 78888887744 34778999
Q ss_pred cccCCeEEEECCCCCccccc
Q 011791 183 LSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 183 v~~~P~~~lid~~G~i~~~~ 202 (477)
+.++|++++++ +|+++.+.
T Consensus 70 v~~~Pt~~~~~-~g~~~~~~ 88 (104)
T 2vim_A 70 VTAMPTFVFIK-DGKEVDRF 88 (104)
T ss_dssp CCSSSEEEEEE-TTEEEEEE
T ss_pred CccccEEEEEe-CCcEEEEE
Confidence 99999988885 88877654
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.9e-10 Score=94.98 Aligned_cols=71 Identities=23% Similarity=0.343 Sum_probs=59.1
Q ss_pred CCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 011791 103 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 182 (477)
Q Consensus 103 l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (477)
.+||+++|+||++||++|+.+.|.+.++++++ + +.++.|+.|.. ..+++.|+
T Consensus 31 ~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~---~--~~~~~vd~~~~-----------------------~~~~~~~~ 82 (117)
T 2xc2_A 31 HKNKLVVVDFFATWCGPCKTIAPLFKELSEKY---D--AIFVKVDVDKL-----------------------EETARKYN 82 (117)
T ss_dssp TTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS---S--SEEEEEETTTS-----------------------HHHHHHTT
T ss_pred CCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc---C--cEEEEEECCcc-----------------------HHHHHHcC
Confidence 46899999999999999999999999988877 3 77788877643 34788999
Q ss_pred cccCCeEEEECCCCCccccc
Q 011791 183 LSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 183 v~~~P~~~lid~~G~i~~~~ 202 (477)
+.++|+++++ ++|+++.+.
T Consensus 83 v~~~Pt~~~~-~~G~~~~~~ 101 (117)
T 2xc2_A 83 ISAMPTFIAI-KNGEKVGDV 101 (117)
T ss_dssp CCSSSEEEEE-ETTEEEEEE
T ss_pred CCccceEEEE-eCCcEEEEE
Confidence 9999998877 688877654
|
| >2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-10 Score=97.03 Aligned_cols=73 Identities=14% Similarity=0.305 Sum_probs=61.6
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++|+++|+||++||++|+.+.|.|.++++++++++ +.++.|++|.+ ..+++.|++
T Consensus 32 ~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~--v~~~~vd~d~~-----------------------~~~~~~~~v 86 (121)
T 2j23_A 32 GDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDK--VGFYKVDVDEQ-----------------------SQIAQEVGI 86 (121)
T ss_dssp SSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHH--SEEEEEETTTC-----------------------HHHHHHHTC
T ss_pred CCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCc--EEEEEEECcCC-----------------------HHHHHHcCC
Confidence 57899999999999999999999999998887654 78888888754 347789999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++ ++|+++.+.
T Consensus 87 ~~~Pt~~~~-~~G~~~~~~ 104 (121)
T 2j23_A 87 RAMPTFVFF-KNGQKIDTV 104 (121)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred CcccEEEEE-ECCeEEeeE
Confidence 999999988 488877653
|
| >2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A | Back alignment and structure |
|---|
Probab=99.04 E-value=2e-10 Score=93.92 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=59.1
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++++++|+||++||++|+.+.|.|.++.+.+. + +.++.|..|.. ..+++.|++
T Consensus 18 ~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--~--v~~~~vd~~~~-----------------------~~l~~~~~v 70 (110)
T 2l6c_A 18 GLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP--Q--VAISSVDSEAR-----------------------PELMKELGF 70 (110)
T ss_dssp TCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT--T--SCEEEEEGGGC-----------------------HHHHHHTTC
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC--C--cEEEEEcCcCC-----------------------HHHHHHcCC
Confidence 46899999999999999999999999888764 2 67777777643 347889999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++ ++|+++.+.
T Consensus 71 ~~~Pt~~~~-~~G~~v~~~ 88 (110)
T 2l6c_A 71 ERVPTLVFI-RDGKVAKVF 88 (110)
T ss_dssp CSSCEEEEE-ESSSEEEEE
T ss_pred cccCEEEEE-ECCEEEEEE
Confidence 999999999 799987654
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=4e-10 Score=92.13 Aligned_cols=71 Identities=20% Similarity=0.379 Sum_probs=60.5
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+|++++|+||++||++|+.+.|.|.++.+.++ + +.++.|+.|.. ..+++.|++
T Consensus 25 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~--v~~~~v~~~~~-----------------------~~~~~~~~v 77 (113)
T 1ti3_A 25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFP--N--VTFLKVDVDEL-----------------------KAVAEEWNV 77 (113)
T ss_dssp SSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS--S--EEEEEEETTTC-----------------------HHHHHHHHC
T ss_pred cCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC--C--cEEEEEEcccc-----------------------HHHHHhCCC
Confidence 57999999999999999999999999999885 3 88888888754 347789999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++ ++|+++.+.
T Consensus 78 ~~~Pt~~~~-~~G~~~~~~ 95 (113)
T 1ti3_A 78 EAMPTFIFL-KDGKLVDKT 95 (113)
T ss_dssp SSTTEEEEE-ETTEEEEEE
T ss_pred CcccEEEEE-eCCEEEEEE
Confidence 999999988 589877654
|
| >1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=2.6e-10 Score=95.18 Aligned_cols=73 Identities=14% Similarity=0.223 Sum_probs=59.0
Q ss_pred CCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 011791 103 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 182 (477)
Q Consensus 103 l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (477)
.+||+++|+||++||++|+.+.|.+.++++++++ +.++.|..+.+ ...+++.|+
T Consensus 35 ~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~----~~~~~vd~~~~----------------------~~~~~~~~~ 88 (124)
T 1faa_A 35 AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD----VIFLKLDCNQE----------------------NKTLAKELG 88 (124)
T ss_dssp TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSST----------------------THHHHHHHC
T ss_pred cCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCC----CEEEEEecCcc----------------------hHHHHHHcC
Confidence 3689999999999999999999999999998863 67777776622 245788999
Q ss_pred cccCCeEEEECCCCCccccc
Q 011791 183 LSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 183 v~~~P~~~lid~~G~i~~~~ 202 (477)
+.++|+++++ ++|+++.+.
T Consensus 89 v~~~Pt~~~~-~~G~~~~~~ 107 (124)
T 1faa_A 89 IRVVPTFKIL-KENSVVGEV 107 (124)
T ss_dssp CSSSSEEEEE-ETTEEEEEE
T ss_pred CCeeeEEEEE-eCCcEEEEE
Confidence 9999996555 789887654
|
| >1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 | Back alignment and structure |
|---|
Probab=99.03 E-value=2e-10 Score=94.82 Aligned_cols=72 Identities=19% Similarity=0.325 Sum_probs=58.8
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++|+++|+||++||++|+.+.|.+.++++.+++.+.++.++.|..+.+ ..+++.|++
T Consensus 23 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-----------------------~~~~~~~~v 79 (120)
T 1mek_A 23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEE-----------------------SDLAQQYGV 79 (120)
T ss_dssp HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTC-----------------------CSSHHHHTC
T ss_pred cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCC-----------------------HHHHHHCCC
Confidence 578999999999999999999999999999987654466666665532 136788999
Q ss_pred ccCCeEEEECCCCCcc
Q 011791 184 STLPTLVIIGPDGKTL 199 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~ 199 (477)
.++|+++++ ++|+.+
T Consensus 80 ~~~Pt~~~~-~~g~~~ 94 (120)
T 1mek_A 80 RGYPTIKFF-RNGDTA 94 (120)
T ss_dssp CSSSEEEEE-ESSCSS
T ss_pred CcccEEEEE-eCCCcC
Confidence 999999999 577765
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A | Back alignment and structure |
|---|
Probab=99.03 E-value=6.7e-11 Score=104.35 Aligned_cols=80 Identities=21% Similarity=0.316 Sum_probs=59.6
Q ss_pred EecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHH
Q 011791 98 ISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKL 177 (477)
Q Consensus 98 v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l 177 (477)
+.....+||+|+|+|||+||++|+.+.|.|.++.+.+... +.++.|++|.+.+. +
T Consensus 39 ~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~---~~~~~v~~d~~~~~----------------------~ 93 (164)
T 1sen_A 39 KKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELS---HNFVMVNLEDEEEP----------------------K 93 (164)
T ss_dssp HHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHH---TTSEEEEEEGGGSC----------------------S
T ss_pred HHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcC---CeEEEEEecCCchH----------------------H
Confidence 3334456899999999999999999999999977665432 45677777644320 2
Q ss_pred HHHcCc--ccCCeEEEECCCCCccccc
Q 011791 178 ARYFEL--STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 178 ~~~~~v--~~~P~~~lid~~G~i~~~~ 202 (477)
...|++ .++|+++++|++|+++.+.
T Consensus 94 ~~~~~~~~~~~Pt~~~~d~~G~~~~~~ 120 (164)
T 1sen_A 94 DEDFSPDGGYIPRILFLDPSGKVHPEI 120 (164)
T ss_dssp CGGGCTTCSCSSEEEEECTTSCBCTTC
T ss_pred HHHhcccCCcCCeEEEECCCCCEEEEE
Confidence 245566 6699999999999988764
|
| >2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A | Back alignment and structure |
|---|
Probab=99.03 E-value=4.5e-10 Score=93.11 Aligned_cols=72 Identities=19% Similarity=0.348 Sum_probs=61.0
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.+++++|+||++||++|+.+.|.+.++.+++++. +.++.|++|.+. .+++.|++
T Consensus 29 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~-----------------------~~~~~~~i 82 (121)
T 2i1u_A 29 SNKPVLVDFWATWCGPCKMVAPVLEEIATERATD---LTVAKLDVDTNP-----------------------ETARNFQV 82 (121)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCCH-----------------------HHHHhcCC
Confidence 4789999999999999999999999999998753 888888887543 47889999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++. +|+++.+.
T Consensus 83 ~~~Pt~~~~~-~g~~~~~~ 100 (121)
T 2i1u_A 83 VSIPTLILFK-DGQPVKRI 100 (121)
T ss_dssp CSSSEEEEEE-TTEEEEEE
T ss_pred CcCCEEEEEE-CCEEEEEe
Confidence 9999998885 88876543
|
| >2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A | Back alignment and structure |
|---|
Probab=99.02 E-value=4.8e-10 Score=89.84 Aligned_cols=71 Identities=15% Similarity=0.239 Sum_probs=60.4
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++++++|+||++||++|+.+.|.+.++++.+++ +.++.|+.|.+ ..+++.|++
T Consensus 15 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~----~~~~~v~~~~~-----------------------~~~~~~~~v 67 (104)
T 2e0q_A 15 SHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ----VGFGKLNSDEN-----------------------PDIAARYGV 67 (104)
T ss_dssp HSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC----ceEEEEECCCC-----------------------HHHHHhCCc
Confidence 478999999999999999999999999988854 77888887754 347889999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++ ++|+++.+.
T Consensus 68 ~~~Pt~~~~-~~g~~~~~~ 85 (104)
T 2e0q_A 68 MSLPTVIFF-KDGEPVDEI 85 (104)
T ss_dssp CSSCEEEEE-ETTEEEEEE
T ss_pred cccCEEEEE-ECCeEhhhc
Confidence 999999999 789877543
|
| >1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=5.4e-10 Score=91.53 Aligned_cols=71 Identities=10% Similarity=0.229 Sum_probs=59.5
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+||+++|+||++||++|+.+.|.|.+++++++ + +.++.|++|... .+++.|++
T Consensus 25 ~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~--~--v~~~~vd~~~~~-----------------------~~~~~~~v 77 (112)
T 1syr_A 25 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT--K--MVFIKVDVDEVS-----------------------EVTEKENI 77 (112)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEETTTTH-----------------------HHHHHTTC
T ss_pred cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC--C--CEEEEEECCCCH-----------------------HHHHHcCC
Confidence 47899999999999999999999999999875 2 788888877543 47889999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++ ++|+++.+.
T Consensus 78 ~~~Pt~~~~-~~G~~~~~~ 95 (112)
T 1syr_A 78 TSMPTFKVY-KNGSSVDTL 95 (112)
T ss_dssp CSSSEEEEE-ETTEEEEEE
T ss_pred CcccEEEEE-ECCcEEEEE
Confidence 999998777 588876643
|
| >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.01 E-value=8.4e-10 Score=94.29 Aligned_cols=71 Identities=20% Similarity=0.315 Sum_probs=60.0
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
++.++|+||++||++|+.+.|.|.+++++++++ +.++.|++|.+. .+++.|++.
T Consensus 50 ~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~~-----------------------~l~~~~~v~ 103 (140)
T 1v98_A 50 APLTLVDFFAPWCGPCRLVSPILEELARDHAGR---LKVVKVNVDEHP-----------------------GLAARYGVR 103 (140)
T ss_dssp CCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTCH-----------------------HHHHHTTCC
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHccCc---eEEEEEECCCCH-----------------------HHHHHCCCC
Confidence 334999999999999999999999999998753 888888887543 478899999
Q ss_pred cCCeEEEECCCCCccccc
Q 011791 185 TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~ 202 (477)
++|+++++ ++|+++...
T Consensus 104 ~~Pt~~~~-~~G~~~~~~ 120 (140)
T 1v98_A 104 SVPTLVLF-RRGAPVATW 120 (140)
T ss_dssp SSSEEEEE-ETTEEEEEE
T ss_pred ccCEEEEE-eCCcEEEEE
Confidence 99999999 689877543
|
| >1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A | Back alignment and structure |
|---|
Probab=99.01 E-value=6.8e-10 Score=92.78 Aligned_cols=77 Identities=19% Similarity=0.329 Sum_probs=59.8
Q ss_pred CCCEEEEEEecC-------CCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHH
Q 011791 104 EGKTIGLYFSMS-------SYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREK 176 (477)
Q Consensus 104 ~gk~vll~F~a~-------wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (477)
+||+++|+|||+ ||++|+.+.|.|.++++++++. +.++.|.++... .|. +....
T Consensus 23 ~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~---~~~~~vd~~~~~-~~~---------------d~~~~ 83 (123)
T 1wou_A 23 NGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEG---CVFIYCQVGEKP-YWK---------------DPNND 83 (123)
T ss_dssp TTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTT---EEEEEEECCCHH-HHH---------------CTTCH
T ss_pred CCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCC---cEEEEEECCCch-hhh---------------chhHH
Confidence 479999999999 9999999999999999887652 888888886422 111 11234
Q ss_pred HHHHcCcccCCeEEEECCCCCcc
Q 011791 177 LARYFELSTLPTLVIIGPDGKTL 199 (477)
Q Consensus 177 l~~~~~v~~~P~~~lid~~G~i~ 199 (477)
+++.|+|.++|++++++..+++.
T Consensus 84 ~~~~~~i~~~Pt~~~~~~~~~~~ 106 (123)
T 1wou_A 84 FRKNLKVTAVPTLLKYGTPQKLV 106 (123)
T ss_dssp HHHHHCCCSSSEEEETTSSCEEE
T ss_pred HHHHCCCCeeCEEEEEcCCceEe
Confidence 77889999999999998744443
|
| >1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.9e-10 Score=96.24 Aligned_cols=72 Identities=18% Similarity=0.337 Sum_probs=56.3
Q ss_pred CCCEEEEEEecCCCc--------------cchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccC
Q 011791 104 EGKTIGLYFSMSSYK--------------ASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPF 169 (477)
Q Consensus 104 ~gk~vll~F~a~wC~--------------~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~ 169 (477)
+||+++|+|||+||+ +|+.+.|.+.+++++++++ +.++.|++|.+.
T Consensus 20 ~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~---~~~~~vd~d~~~----------------- 79 (123)
T 1oaz_A 20 ADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNP----------------- 79 (123)
T ss_dssp CSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC----------CEEEEEETTSCT-----------------
T ss_pred CCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCC---eEEEEEECCCCH-----------------
Confidence 579999999999999 9999999999999888753 788888887542
Q ss_pred CchhHHHHHHHcCcccCCeEEEECCCCCccccc
Q 011791 170 KDKSREKLARYFELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 170 ~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 202 (477)
.+++.|+|.++|+++++ ++|+++.+.
T Consensus 80 ------~l~~~~~v~~~Pt~~~~-~~G~~~~~~ 105 (123)
T 1oaz_A 80 ------GTAPKYGIRGIPTLLLF-KNGEVAATK 105 (123)
T ss_dssp ------TTGGGGTCCBSSEEEEE-ESSSEEEEE
T ss_pred ------HHHHHcCCCccCEEEEE-ECCEEEEEE
Confidence 26789999999999999 899987643
|
| >3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.9e-10 Score=100.62 Aligned_cols=80 Identities=14% Similarity=0.116 Sum_probs=55.2
Q ss_pred CCCEEEEEEecCCCccchhhHHH---HHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPR---LVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~---l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (477)
+||+|+|+|||+||++|+.+.|. ..++.+.+++. |.+|.|..|..++-...+. ..+...
T Consensus 38 ~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~---fv~ikVD~de~~~l~~~y~---------------~~~q~~ 99 (173)
T 3ira_A 38 ENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEA---FVSIKVDREERPDIDNIYM---------------TVCQII 99 (173)
T ss_dssp HTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHH---CEEEEEETTTCHHHHHHHH---------------HHHHHH
T ss_pred hCCCEEEecccchhHhhccccccccCCHHHHHHHHhc---CceeeeCCcccCcHHHHHH---------------HHHHHH
Confidence 46999999999999999998772 23555555543 6666666654443222111 112234
Q ss_pred cCcccCCeEEEECCCCCcccc
Q 011791 181 FELSTLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 181 ~~v~~~P~~~lid~~G~i~~~ 201 (477)
+|+.++|++++++++|+++..
T Consensus 100 ~gv~g~Pt~v~l~~dG~~v~~ 120 (173)
T 3ira_A 100 LGRGGWPLNIIMTPGKKPFFA 120 (173)
T ss_dssp HSCCCSSEEEEECTTSCEEEE
T ss_pred cCCCCCcceeeECCCCCceee
Confidence 699999999999999998875
|
| >2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.4e-09 Score=94.36 Aligned_cols=73 Identities=12% Similarity=0.256 Sum_probs=54.5
Q ss_pred CCEEEEEEeCCCChhhHhHhHHH---HHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhc
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 341 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 341 (477)
+|+|+|+|+++||.+|+.+.... .++.+.+++. +.++.++++... ...+.+.|
T Consensus 42 ~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~---fv~v~~d~~~~~---------------------~~~l~~~y 97 (153)
T 2dlx_A 42 NKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREH---FIFWQVYHDSEE---------------------GQRYIQFY 97 (153)
T ss_dssp TCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHT---EEEEEEESSSHH---------------------HHHHHHHH
T ss_pred CCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcC---eEEEEEecCCHh---------------------HHHHHHHc
Confidence 89999999999999999986544 3444445444 555555554321 34678899
Q ss_pred CCCCcceEEEECCC-CcEEEe
Q 011791 342 KVSGIPMLVAIGPS-GRTITK 361 (477)
Q Consensus 342 ~v~~~Pt~~lid~~-G~iv~~ 361 (477)
++.++|++++||++ |+.+..
T Consensus 98 ~v~~~P~~~fld~~~G~~l~~ 118 (153)
T 2dlx_A 98 KLGDFPYVSILDPRTGQKLVE 118 (153)
T ss_dssp TCCSSSEEEEECTTTCCCCEE
T ss_pred CCCCCCEEEEEeCCCCcEeee
Confidence 99999999999998 876654
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.9e-10 Score=105.42 Aligned_cols=72 Identities=18% Similarity=0.337 Sum_probs=61.5
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++|+++|+|||+||++|+.+.|.|.+++++++++ +.++.|++|.+.+ +++.|+|
T Consensus 29 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~d~~~~-----------------------l~~~~~v 82 (222)
T 3dxb_A 29 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNPG-----------------------TAPKYGI 82 (222)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCTT-----------------------TGGGGTC
T ss_pred cCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCCCHH-----------------------HHHHcCC
Confidence 5789999999999999999999999999999865 7888888875432 5678999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|++++++ +|+++.+.
T Consensus 83 ~~~Pt~~~~~-~G~~~~~~ 100 (222)
T 3dxb_A 83 RGIPTLLLFK-NGEVAATK 100 (222)
T ss_dssp CSBSEEEEEE-TTEEEEEE
T ss_pred CcCCEEEEEE-CCeEEEEe
Confidence 9999999995 78877644
|
| >3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-10 Score=99.19 Aligned_cols=77 Identities=14% Similarity=0.103 Sum_probs=59.7
Q ss_pred EEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccC
Q 011791 107 TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTL 186 (477)
Q Consensus 107 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 186 (477)
+++|+|||+||++|+.+.|.|.+++++++ +.++.|+++++... ...+....+++.|+|.++
T Consensus 33 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-----v~~~~vd~~~~~~~--------------~~~d~~~~l~~~~~v~~~ 93 (135)
T 3emx_A 33 DAILAVYSKTCPHCHRDWPQLIQASKEVD-----VPIVMFIWGSLIGE--------------RELSAARLEMNKAGVEGT 93 (135)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHTTCC-----SCEEEEEECTTCCH--------------HHHHHHHHHHHHHTCCSS
T ss_pred cEEEEEECCcCHhhhHhChhHHHHHHHCC-----CEEEEEECCCchhh--------------hhhhhhHHHHHHcCCcee
Confidence 79999999999999999999999988774 56777877543221 011233568899999999
Q ss_pred CeEEEECCCCCccccch
Q 011791 187 PTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 187 P~~~lid~~G~i~~~~~ 203 (477)
|++++++ +|+++.+..
T Consensus 94 Pt~~~~~-~G~~v~~~~ 109 (135)
T 3emx_A 94 PTLVFYK-EGRIVDKLV 109 (135)
T ss_dssp SEEEEEE-TTEEEEEEE
T ss_pred CeEEEEc-CCEEEEEEe
Confidence 9988888 898877653
|
| >2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A | Back alignment and structure |
|---|
Probab=99.00 E-value=5.3e-10 Score=92.17 Aligned_cols=71 Identities=23% Similarity=0.406 Sum_probs=59.6
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+||+++|+||++||++|+.+.|.|.++.++++ + +.++.|+.|.. ..+++.|++
T Consensus 27 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~--~~~~~v~~~~~-----------------------~~~~~~~~v 79 (118)
T 2vm1_A 27 TGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP--G--AIFLKVDVDEL-----------------------KDVAEAYNV 79 (118)
T ss_dssp HTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEETTTS-----------------------HHHHHHTTC
T ss_pred CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--C--cEEEEEEcccC-----------------------HHHHHHcCC
Confidence 36889999999999999999999999999886 3 77888877643 347889999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++ ++|+++.+.
T Consensus 80 ~~~Pt~~~~-~~g~~~~~~ 97 (118)
T 2vm1_A 80 EAMPTFLFI-KDGEKVDSV 97 (118)
T ss_dssp CSBSEEEEE-ETTEEEEEE
T ss_pred CcCcEEEEE-eCCeEEEEe
Confidence 999999888 688877654
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.00 E-value=6.9e-10 Score=101.88 Aligned_cols=73 Identities=18% Similarity=0.273 Sum_probs=62.5
Q ss_pred CCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 011791 103 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 182 (477)
Q Consensus 103 l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (477)
.+|++++|+||++||++|+.+.|.+.++++++++. +.++.|++|... .+++.|+
T Consensus 112 ~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~---v~~~~vd~~~~~-----------------------~l~~~~~ 165 (210)
T 3apq_A 112 NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGL---LRIGAVNCGDDR-----------------------MLCRMKG 165 (210)
T ss_dssp HHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTT---BEEEEEETTTCH-----------------------HHHHHTT
T ss_pred ccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCc---eEEEEEECCccH-----------------------HHHHHcC
Confidence 46899999999999999999999999999998754 888888877543 4788999
Q ss_pred cccCCeEEEECCCCCccccc
Q 011791 183 LSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 183 v~~~P~~~lid~~G~i~~~~ 202 (477)
|.++|+++++ ++|+++.+.
T Consensus 166 v~~~Pt~~~~-~~G~~~~~~ 184 (210)
T 3apq_A 166 VNSYPSLFIF-RSGMAAVKY 184 (210)
T ss_dssp CCSSSEEEEE-CTTSCCEEC
T ss_pred CCcCCeEEEE-ECCCceeEe
Confidence 9999999999 889876543
|
| >3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A | Back alignment and structure |
|---|
Probab=98.99 E-value=9.2e-10 Score=110.03 Aligned_cols=91 Identities=10% Similarity=0.134 Sum_probs=66.5
Q ss_pred CCCEEEEEEeCCCChhhHhHh------HHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHH
Q 011791 264 AGKTILLYFSAHWCPPCRAFL------PKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASL 337 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~------p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 337 (477)
.++++||+|||+||++|+... |.++++++.++.. ++.++.|+++... .+
T Consensus 29 ~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~--~v~~~~Vd~~~~~-----------------------~l 83 (367)
T 3us3_A 29 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDK--GVGFGLVDSEKDA-----------------------AV 83 (367)
T ss_dssp HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTTH-----------------------HH
T ss_pred hCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcC--CceEEEEeCcccH-----------------------HH
Confidence 378999999999999974332 6788888888643 5777777776543 68
Q ss_pred HHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcC
Q 011791 338 SRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKG 395 (477)
Q Consensus 338 ~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 395 (477)
++.|+|+++||++++ ++|+++... | +.+ .+.|.+.+.+.+..
T Consensus 84 ~~~~~V~~~PTl~~f-~~G~~~~y~--------G----~~~---~~~i~~~i~~~~~~ 125 (367)
T 3us3_A 84 AKKLGLTEEDSIYVF-KEDEVIEYD--------G----EFS---ADTLVEFLLDVLED 125 (367)
T ss_dssp HHHHTCCSTTEEEEE-ETTEEEECC--------S----CCS---HHHHHHHHHHHHSC
T ss_pred HHHcCCCcCceEEEE-ECCcEEEeC--------C----CCC---HHHHHHHHHHhcCC
Confidence 999999999999999 578875432 2 222 35566667666543
|
| >2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A | Back alignment and structure |
|---|
Probab=98.98 E-value=4.7e-10 Score=93.02 Aligned_cols=81 Identities=11% Similarity=0.128 Sum_probs=60.6
Q ss_pred cCCCCeEecC-CCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCC--CcEEEEEEEcCCCHHHHHHhhcCCCCcccc
Q 011791 92 SSDGRKISVS-DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKG--ESFEIVLISLDDEEESFKRDLGSMPWLALP 168 (477)
Q Consensus 92 ~~~g~~v~ls-~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g--~~~~vv~is~D~~~~~~~~~~~~~~~~~~~ 168 (477)
+.+++.+... ..++++++|+|||+||++|+.+.|.|.++++++++.+ .++.++.|..+...
T Consensus 11 ~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---------------- 74 (121)
T 2djj_A 11 VVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND---------------- 74 (121)
T ss_dssp ECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC----------------
T ss_pred EecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc----------------
Confidence 3444444433 2368999999999999999999999999999998631 13777777766431
Q ss_pred CCchhHHHHHHHcCcccCCeEEEECCCCCc
Q 011791 169 FKDKSREKLARYFELSTLPTLVIIGPDGKT 198 (477)
Q Consensus 169 ~~~~~~~~l~~~~~v~~~P~~~lid~~G~i 198 (477)
+++ ++.++|++++++++|++
T Consensus 75 --------~~~--~v~~~Pt~~~~~~~~~~ 94 (121)
T 2djj_A 75 --------VPD--EIQGFPTIKLYPAGAKG 94 (121)
T ss_dssp --------CSS--CCSSSSEEEEECSSCTT
T ss_pred --------ccc--ccCcCCeEEEEeCcCCC
Confidence 122 89999999999988774
|
| >2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.8e-10 Score=97.68 Aligned_cols=73 Identities=10% Similarity=0.149 Sum_probs=59.8
Q ss_pred CCEEEEEEecCC--CccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 011791 105 GKTIGLYFSMSS--YKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 182 (477)
Q Consensus 105 gk~vll~F~a~w--C~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (477)
+++|+|+|||+| |+||+...|.|.++.++|.++. +.|+-|++|.+ ..+++.||
T Consensus 34 ~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~--v~~~KVdvDe~-----------------------~~lA~~yg 88 (140)
T 2qgv_A 34 APDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYT--WQVAIADLEQS-----------------------EAIGDRFG 88 (140)
T ss_dssp CSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSC--CEEEECCHHHH-----------------------HHHHHHHT
T ss_pred CCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCe--EEEEEEECCCC-----------------------HHHHHHcC
Confidence 456889999999 9999999999999999986542 56666666533 45899999
Q ss_pred cccCCeEEEECCCCCccccch
Q 011791 183 LSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 183 v~~~P~~~lid~~G~i~~~~~ 203 (477)
|+++||++++ ++|+.+.+..
T Consensus 89 V~sIPTlilF-k~G~~v~~~~ 108 (140)
T 2qgv_A 89 AFRFPATLVF-TGGNYRGVLN 108 (140)
T ss_dssp CCSSSEEEEE-ETTEEEEEEE
T ss_pred CccCCEEEEE-ECCEEEEEEe
Confidence 9999999999 5899887654
|
| >2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=98.96 E-value=8.4e-10 Score=93.91 Aligned_cols=69 Identities=13% Similarity=0.103 Sum_probs=56.6
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+||+|+|+|||+||++|+.+.|.|.++++++. + +.++.|.+|... +.|+|
T Consensus 29 ~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~--~--v~~~~vd~~~~~--------------------------~~~~i 78 (135)
T 2dbc_A 29 KDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP--E--TKFVKAIVNSCI--------------------------EHYHD 78 (135)
T ss_dssp SSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS--S--EEEEEECCSSSC--------------------------SSCCS
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC--C--cEEEEEEhhcCc--------------------------ccCCC
Confidence 46899999999999999999999999999874 2 677777665431 47899
Q ss_pred ccCCeEEEECCCCCccccch
Q 011791 184 STLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~~ 203 (477)
.++|++++++ +|+++.+..
T Consensus 79 ~~~Pt~~~~~-~G~~v~~~~ 97 (135)
T 2dbc_A 79 NCLPTIFVYK-NGQIEGKFI 97 (135)
T ss_dssp SCCSEEEEES-SSSCSEEEE
T ss_pred CCCCEEEEEE-CCEEEEEEE
Confidence 9999999997 898877653
|
| >1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=9.1e-10 Score=85.04 Aligned_cols=64 Identities=19% Similarity=0.256 Sum_probs=54.2
Q ss_pred CEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCccc
Q 011791 106 KTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELST 185 (477)
Q Consensus 106 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 185 (477)
.+++++||++||++|+.+.|.|.++++++++. +.++.|++|.+. .+++.|++.+
T Consensus 3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~v~~ 56 (85)
T 1fo5_A 3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDA---VEVEYINVMENP-----------------------QKAMEYGIMA 56 (85)
T ss_dssp CEEEEEEECCCSSCCCTHHHHHHHHHHHCSSS---EEEEEEESSSSC-----------------------CTTTSTTTCC
T ss_pred ceEEEEEeCCCCCchHHHHHHHHHHHHHcCCc---eEEEEEECCCCH-----------------------HHHHHCCCcc
Confidence 46899999999999999999999999988743 899999887543 2557899999
Q ss_pred CCeEEEECCCCCc
Q 011791 186 LPTLVIIGPDGKT 198 (477)
Q Consensus 186 ~P~~~lid~~G~i 198 (477)
+|++++ +|++
T Consensus 57 ~Pt~~~---~G~~ 66 (85)
T 1fo5_A 57 VPTIVI---NGDV 66 (85)
T ss_dssp SSEEEE---TTEE
T ss_pred cCEEEE---CCEE
Confidence 999988 7776
|
| >1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=8.4e-10 Score=85.25 Aligned_cols=63 Identities=14% Similarity=0.160 Sum_probs=53.1
Q ss_pred EEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccC
Q 011791 107 TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTL 186 (477)
Q Consensus 107 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 186 (477)
+++++||++||++|+.+.|.|.++++++++. +.++.|++|.+. .+++.||+.++
T Consensus 3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~v~~~ 56 (85)
T 1nho_A 3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDK---IDVEKIDIMVDR-----------------------EKAIEYGLMAV 56 (85)
T ss_dssp CCEEEESCSSSCCSTTHHHHHHHHHHHHCSS---CCEEEECTTTCG-----------------------GGGGGTCSSCS
T ss_pred EEEEEEECCCCcchHHHHHHHHHHHHHhcCC---eEEEEEECCCCH-----------------------HHHHhCCceee
Confidence 3578999999999999999999999999753 788888887553 25678999999
Q ss_pred CeEEEECCCCCc
Q 011791 187 PTLVIIGPDGKT 198 (477)
Q Consensus 187 P~~~lid~~G~i 198 (477)
|++++ +|++
T Consensus 57 Pt~~~---~G~~ 65 (85)
T 1nho_A 57 PAIAI---NGVV 65 (85)
T ss_dssp SEEEE---TTTE
T ss_pred CEEEE---CCEE
Confidence 99988 7776
|
| >2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=98.86 E-value=5e-09 Score=84.78 Aligned_cols=65 Identities=22% Similarity=0.407 Sum_probs=54.0
Q ss_pred EEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCc
Q 011791 267 TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGI 346 (477)
Q Consensus 267 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~ 346 (477)
.+|+.||++||++|+.+.|.|.++.++++ +.+..|++|.+. ++...|+++ +
T Consensus 30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~-----i~~~~vDId~d~-----------------------~l~~~ygv~-V 80 (107)
T 2fgx_A 30 RKLVVYGREGCHLCEEMIASLRVLQKKSW-----FELEVINIDGNE-----------------------HLTRLYNDR-V 80 (107)
T ss_dssp CCEEEEECSSCHHHHHHHHHHHHHHHHSC-----CCCEEEETTTCH-----------------------HHHHHSTTS-C
T ss_pred cEEEEEeCCCChhHHHHHHHHHHHHHhcC-----CeEEEEECCCCH-----------------------HHHHHhCCC-C
Confidence 56899999999999999999999887753 667778888665 477889997 9
Q ss_pred ceEEEECCCCcEEEe
Q 011791 347 PMLVAIGPSGRTITK 361 (477)
Q Consensus 347 Pt~~lid~~G~iv~~ 361 (477)
|+++++ .+|+.+..
T Consensus 81 P~l~~~-~dG~~v~~ 94 (107)
T 2fgx_A 81 PVLFAV-NEDKELCH 94 (107)
T ss_dssp SEEEET-TTTEEEEC
T ss_pred ceEEEE-ECCEEEEe
Confidence 999988 68988743
|
| >3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-08 Score=90.70 Aligned_cols=72 Identities=18% Similarity=0.307 Sum_probs=57.6
Q ss_pred CCCEEEEEEec-------CCCccchhhHHHHHHHHHHHhcC--CCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhH
Q 011791 104 EGKTIGLYFSM-------SSYKASAEFTPRLVEVYEKLKGK--GESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSR 174 (477)
Q Consensus 104 ~gk~vll~F~a-------~wC~~C~~~~p~l~~l~~~~~~~--g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (477)
++.+|+|+||| .||+||+.+.|.+.++.++|... +.++.++-|.+|..
T Consensus 36 ~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~----------------------- 92 (178)
T 3ga4_A 36 PGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEV----------------------- 92 (178)
T ss_dssp TTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTC-----------------------
T ss_pred CCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccC-----------------------
Confidence 35689999999 49999999999999999999721 02377777777755
Q ss_pred HHHHHHcCcccCCeEEEECCCCCc
Q 011791 175 EKLARYFELSTLPTLVIIGPDGKT 198 (477)
Q Consensus 175 ~~l~~~~~v~~~P~~~lid~~G~i 198 (477)
..+++.|||+++|+++++.+.+..
T Consensus 93 ~~la~~~~I~siPtl~~F~~g~~~ 116 (178)
T 3ga4_A 93 PQLVKDLKLQNVPHLVVYPPAESN 116 (178)
T ss_dssp HHHHHHTTCCSSCEEEEECCCCGG
T ss_pred HHHHHHcCCCCCCEEEEEcCCCCC
Confidence 348899999999999999866543
|
| >1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=6.5e-09 Score=78.67 Aligned_cols=62 Identities=18% Similarity=0.123 Sum_probs=50.6
Q ss_pred EEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCC
Q 011791 108 IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLP 187 (477)
Q Consensus 108 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 187 (477)
+.|+||++||++|+.+.|.+.++.+++... +.++.|. + ..+++.|++.++|
T Consensus 2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~~---~~~~~v~---~-----------------------~~~~~~~~v~~~P 52 (77)
T 1ilo_A 2 MKIQIYGTGCANCQMLEKNAREAVKELGID---AEFEKIK---E-----------------------MDQILEAGLTALP 52 (77)
T ss_dssp EEEEEECSSSSTTHHHHHHHHHHHHHTTCC---EEEEEEC---S-----------------------HHHHHHHTCSSSS
T ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHcCCc---eEEEEec---C-----------------------HHHHHHCCCCcCC
Confidence 358999999999999999999999988643 6766664 1 3477899999999
Q ss_pred eEEEECCCCCcccc
Q 011791 188 TLVIIGPDGKTLHS 201 (477)
Q Consensus 188 ~~~lid~~G~i~~~ 201 (477)
++++ +|+++.+
T Consensus 53 t~~~---~G~~~~~ 63 (77)
T 1ilo_A 53 GLAV---DGELKIM 63 (77)
T ss_dssp CEEE---TTEEEEC
T ss_pred EEEE---CCEEEEc
Confidence 9988 7887655
|
| >3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=98.84 E-value=8.9e-11 Score=95.59 Aligned_cols=72 Identities=8% Similarity=0.183 Sum_probs=50.3
Q ss_pred EecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHH
Q 011791 98 ISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKL 177 (477)
Q Consensus 98 v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l 177 (477)
+++++..||.++|+|||+||++|+.+.|.|.++++.++ .|.++.+.. .+....+
T Consensus 5 ~~la~~~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~---------~v~~~~~~~-----------------~~~~~~l 58 (106)
T 3kp8_A 5 VGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP---------YVECSPNGP-----------------GTPQAQE 58 (106)
T ss_dssp HHHHHHHHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC---------EEESCTTCT-----------------TSCCCHH
T ss_pred hHHHHhcCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC---------EEEEecccc-----------------cchhHHH
Confidence 44555567778899999999999999999988875553 233331100 0012458
Q ss_pred HHHcCcccCCeEEEECCCCCc
Q 011791 178 ARYFELSTLPTLVIIGPDGKT 198 (477)
Q Consensus 178 ~~~~~v~~~P~~~lid~~G~i 198 (477)
++.|+|.++|++++ +|+.
T Consensus 59 ~~~~~V~~~PT~~i---~G~~ 76 (106)
T 3kp8_A 59 CTEAGITSYPTWII---NGRT 76 (106)
T ss_dssp HHHTTCCSSSEEEE---TTEE
T ss_pred HHHcCCeEeCEEEE---CCEE
Confidence 89999999999777 6653
|
| >1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} | Back alignment and structure |
|---|
Probab=98.84 E-value=5.4e-10 Score=93.84 Aligned_cols=71 Identities=21% Similarity=0.379 Sum_probs=58.2
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+||+++|+||++||++|+.+.|.|.+++++++ + +.++.|++|... .+++.|++
T Consensus 35 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~--v~~~~v~~~~~~-----------------------~~~~~~~v 87 (130)
T 1wmj_A 35 AGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP--G--AVFLKVDVDELK-----------------------EVAEKYNV 87 (130)
T ss_dssp TTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT--T--BCCEECCTTTSG-----------------------GGHHHHTC
T ss_pred cCCEEEEEEECCCChhHHHHHHHHHHHHHHCC--C--CEEEEEeccchH-----------------------HHHHHcCC
Confidence 57899999999999999999999999999886 2 667777665432 36788999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++ ++|+++.+.
T Consensus 88 ~~~Pt~~~~-~~g~~~~~~ 105 (130)
T 1wmj_A 88 EAMPTFLFI-KDGAEADKV 105 (130)
T ss_dssp CSSCCCCBC-TTTTCCBCC
T ss_pred CccceEEEE-eCCeEEEEE
Confidence 999998877 788877554
|
| >2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.31 E-value=4.4e-10 Score=90.41 Aligned_cols=71 Identities=18% Similarity=0.393 Sum_probs=58.3
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.+|+++|+||++||++|+.+.|.+.++.+++++. +.++.|+.|.+ ..+++.|++
T Consensus 18 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~-----------------------~~~~~~~~v 71 (106)
T 2yj7_A 18 SDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGK---VKVVKVNVDEN-----------------------PNTAAQYGI 71 (106)
Confidence 4689999999999999999999999999888753 67776766533 236788999
Q ss_pred ccCCeEEEECCCCCcccc
Q 011791 184 STLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~ 201 (477)
.++|+++++ ++|+++.+
T Consensus 72 ~~~Pt~~~~-~~g~~~~~ 88 (106)
T 2yj7_A 72 RSIPTLLLF-KNGQVVDR 88 (106)
Confidence 999999999 78887654
|
| >2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1e-08 Score=86.85 Aligned_cols=67 Identities=9% Similarity=0.109 Sum_probs=56.9
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++++|||+ |++|+.+.|.|.+++++|+++ +.++.+++|... .++..|||+
T Consensus 23 ~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk---~~f~~vd~d~~~-----------------------~~a~~~gi~ 75 (133)
T 2djk_A 23 GIPLAYIFAET-AEERKELSDKLKPIAEAQRGV---INFGTIDAKAFG-----------------------AHAGNLNLK 75 (133)
T ss_dssp TSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTT---SEEEEECTTTTG-----------------------GGTTTTTCC
T ss_pred CCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCe---EEEEEEchHHhH-----------------------HHHHHcCCC
Confidence 67899999999 899999999999999999765 778878777443 578899999
Q ss_pred C--cceEEEECC-CCcE
Q 011791 345 G--IPMLVAIGP-SGRT 358 (477)
Q Consensus 345 ~--~Pt~~lid~-~G~i 358 (477)
+ +||+++++. +|+.
T Consensus 76 ~~~iPtl~i~~~~~g~~ 92 (133)
T 2djk_A 76 TDKFPAFAIQEVAKNQK 92 (133)
T ss_dssp SSSSSEEEEECTTTCCB
T ss_pred cccCCEEEEEecCcCcc
Confidence 9 999999963 4665
|
| >3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=4e-09 Score=87.39 Aligned_cols=68 Identities=13% Similarity=0.106 Sum_probs=55.6
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++|+|+|||+||+||+.+.|.|.++.++|.+ +.++-|.+|.. ++.|+|.
T Consensus 23 ~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~~----v~f~kvd~d~~--------------------------~~~~~v~ 72 (118)
T 3evi_A 23 DVWVIIHLYRSSIPMCLLVNQHLSLLARKFPE----TKFVKAIVNSC--------------------------IQHYHDN 72 (118)
T ss_dssp TCEEEEEEECTTSHHHHHHHHHHHHHHHHCTT----SEEEEEEGGGT--------------------------STTCCGG
T ss_pred CCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC----CEEEEEEhHHh--------------------------HHHCCCC
Confidence 45999999999999999999999999999853 56666666521 2578999
Q ss_pred cCCeEEEECCCCCccccch
Q 011791 185 TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~~ 203 (477)
++||++++. +|+.+.+..
T Consensus 73 ~~PT~~~fk-~G~~v~~~~ 90 (118)
T 3evi_A 73 CLPTIFVYK-NGQIEAKFI 90 (118)
T ss_dssp GCSEEEEEE-TTEEEEEEE
T ss_pred CCCEEEEEE-CCEEEEEEe
Confidence 999999985 888877653
|
| >1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A | Back alignment and structure |
|---|
Probab=98.80 E-value=5.2e-08 Score=89.74 Aligned_cols=89 Identities=20% Similarity=0.334 Sum_probs=59.2
Q ss_pred cCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC----Ch---------------hHHHHHHhcC
Q 011791 262 DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR----DQ---------------TSFDEFFKGM 322 (477)
Q Consensus 262 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~----~~---------------~~~~~~~~~~ 322 (477)
...+|++++.||++|||+|+++.|.|.++.+. +++|+++.... .. ..+.+++...
T Consensus 83 ~~~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~------~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~ 156 (216)
T 1eej_A 83 APQEKHVITVFTDITCGYCHKLHEQMADYNAL------GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGK 156 (216)
T ss_dssp CTTCCEEEEEEECTTCHHHHHHHTTHHHHHHT------TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTC
T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHHHHhC------CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCC
Confidence 34589999999999999999999999887542 47777765531 11 1233334333
Q ss_pred CCc--eeccCcchhHHHHHhcCCCCcceEEEECCCCcE
Q 011791 323 PWL--ALPFGDARKASLSRKFKVSGIPMLVAIGPSGRT 358 (477)
Q Consensus 323 ~~~--~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i 358 (477)
+.. ......+.+..+++.|||+++||+++. +|+.
T Consensus 157 ~~~~~~~~~~v~~~~~l~~~~gV~gtPt~v~~--dG~~ 192 (216)
T 1eej_A 157 SVAPASCDVDIADHYALGVQLGVSGTPAVVLS--NGTL 192 (216)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHTCCSSSEEECT--TSCE
T ss_pred CCChhHHHHHHHHHHHHHHHcCCCccCEEEEc--CCeE
Confidence 211 112233556788999999999999554 5654
|
| >3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=5.2e-09 Score=106.36 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=59.2
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCC-----CcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHH
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKG-----ESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLA 178 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g-----~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 178 (477)
.+|+|+|+|||+||+||+.+.|.+.++++.+++.. .++.++.|++|.. ..++
T Consensus 41 ~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~-----------------------~~la 97 (470)
T 3qcp_A 41 PLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASE-----------------------VDLC 97 (470)
T ss_dssp GGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTC-----------------------HHHH
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCC-----------------------HHHH
Confidence 35899999999999999999999999999997542 1488888887754 3478
Q ss_pred HHcCcccCCeEEEECCCCC
Q 011791 179 RYFELSTLPTLVIIGPDGK 197 (477)
Q Consensus 179 ~~~~v~~~P~~~lid~~G~ 197 (477)
+.|+|.++|++++++++|.
T Consensus 98 ~~y~V~~~PTlilf~~gg~ 116 (470)
T 3qcp_A 98 RKYDINFVPRLFFFYPRDS 116 (470)
T ss_dssp HHTTCCSSCEEEEEEESSC
T ss_pred HHcCCCccCeEEEEECCCc
Confidence 9999999999999976553
|
| >1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C | Back alignment and structure |
|---|
Probab=98.79 E-value=2.2e-09 Score=100.55 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=57.2
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+|++|+|+|||+||++|+.+.|.|.+++++|.+ +.++.|.++. ..+++.|+|
T Consensus 132 ~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~----v~f~kVd~d~------------------------~~l~~~~~I 183 (245)
T 1a0r_P 132 KITTIVVHIYEDGIKGCDALNSSLICLAAEYPM----VKFCKIKASN------------------------TGAGDRFSS 183 (245)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTT----SEEEEEEHHH------------------------HCCTTSSCT
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC----CEEEEEeCCc------------------------HHHHHHCCC
Confidence 489999999999999999999999999999863 5666665542 114567899
Q ss_pred ccCCeEEEECCCCCccccch
Q 011791 184 STLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~~ 203 (477)
.++||++++. +|+++.+..
T Consensus 184 ~~~PTll~~~-~G~~v~~~v 202 (245)
T 1a0r_P 184 DVLPTLLVYK-GGELLSNFI 202 (245)
T ss_dssp TTCSEEEEEE-TTEEEEEET
T ss_pred CCCCEEEEEE-CCEEEEEEe
Confidence 9999998886 898876543
|
| >3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.78 E-value=1e-08 Score=83.09 Aligned_cols=73 Identities=10% Similarity=0.121 Sum_probs=59.5
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++++|+|+|+||+||+...|.+.++.+. . . +.++.|.+|..++ ....+++.|||+
T Consensus 24 ~~~vvi~khatwCgpc~~~~~~~e~~~~~--~-~--v~~~~vdVde~r~-------------------~Sn~IA~~~~V~ 79 (112)
T 3iv4_A 24 NKYVFVLKHSETCPISANAYDQFNKFLYE--R-D--MDGYYLIVQQERD-------------------LSDYIAKKTNVK 79 (112)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHH--H-T--CCEEEEEGGGGHH-------------------HHHHHHHHHTCC
T ss_pred CCCEEEEEECCcCHhHHHHHHHHHHHhcc--C-C--ceEEEEEeecCch-------------------hhHHHHHHhCCc
Confidence 58999999999999999999999998874 2 2 7788888875542 124689999999
Q ss_pred c-CCeEEEECCCCCccccc
Q 011791 185 T-LPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 185 ~-~P~~~lid~~G~i~~~~ 202 (477)
+ .|+++++ ++|+.+.+.
T Consensus 80 h~sPq~il~-k~G~~v~~~ 97 (112)
T 3iv4_A 80 HESPQAFYF-VNGEMVWNR 97 (112)
T ss_dssp CCSSEEEEE-ETTEEEEEE
T ss_pred cCCCeEEEE-ECCEEEEEe
Confidence 5 9999999 588888764
|
| >1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-08 Score=79.51 Aligned_cols=58 Identities=22% Similarity=0.415 Sum_probs=45.9
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
++.||++||++|+.+.|.|.++..++ +..|++|.++ ++...|+++ +|+
T Consensus 3 vv~f~a~~C~~C~~~~~~L~~~~~~~--------~~~vdid~~~-----------------------~l~~~~g~~-vPt 50 (87)
T 1ttz_A 3 LTLYQRDDCHLCDQAVEALAQARAGA--------FFSVFIDDDA-----------------------ALESAYGLR-VPV 50 (87)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCCC--------EEEEECTTCH-----------------------HHHHHHTTT-CSE
T ss_pred EEEEECCCCchHHHHHHHHHHHHHhh--------eEEEECCCCH-----------------------HHHHHhCCC-cCe
Confidence 68899999999999999997753321 4557777654 578889998 999
Q ss_pred EEEECCCCcEEE
Q 011791 349 LVAIGPSGRTIT 360 (477)
Q Consensus 349 ~~lid~~G~iv~ 360 (477)
+++ .+|+.+.
T Consensus 51 l~~--~~G~~v~ 60 (87)
T 1ttz_A 51 LRD--PMGRELD 60 (87)
T ss_dssp EEC--TTCCEEE
T ss_pred EEE--ECCEEEe
Confidence 988 6798874
|
| >2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A | Back alignment and structure |
|---|
Probab=98.75 E-value=3.5e-08 Score=92.42 Aligned_cols=82 Identities=11% Similarity=0.134 Sum_probs=60.1
Q ss_pred eeccCCCceecccCCCCEEEEEEe--CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC--ChhHHHHHHhcCCCc
Q 011791 250 VVGKNGGKVPVSDLAGKTILLYFS--AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR--DQTSFDEFFKGMPWL 325 (477)
Q Consensus 250 ~l~~~g~~~~l~~~~gk~vll~F~--a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~--~~~~~~~~~~~~~~~ 325 (477)
++.++..++.-.--.+++|||.|| ||||+ +.|.|.+++++++...+++.|..|++|. +.+
T Consensus 18 v~~Lt~~nF~~vi~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~------------ 81 (248)
T 2c0g_A 18 CVDLDELSFEKTVERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELE------------ 81 (248)
T ss_dssp CEECCTTTHHHHHTTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCT------------
T ss_pred cEECCHHHHHHHHhcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccc------------
Confidence 334444444321124689999999 99998 9999999999997522357788787775 100
Q ss_pred eeccCcchhHHHHHhcCCC--CcceEEEECCCCc
Q 011791 326 ALPFGDARKASLSRKFKVS--GIPMLVAIGPSGR 357 (477)
Q Consensus 326 ~~p~~~d~~~~l~~~~~v~--~~Pt~~lid~~G~ 357 (477)
+..+++.|+|+ ++||+++| + |+
T Consensus 82 --------n~~la~~~~V~~~~~PTl~~F-~-G~ 105 (248)
T 2c0g_A 82 --------NKALGDRYKVDDKNFPSIFLF-K-GN 105 (248)
T ss_dssp --------THHHHHHTTCCTTSCCEEEEE-S-SS
T ss_pred --------cHHHHHHhCCCcCCCCeEEEE-e-CC
Confidence 23689999999 99999999 5 77
|
| >3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.1e-07 Score=84.23 Aligned_cols=48 Identities=15% Similarity=0.269 Sum_probs=37.6
Q ss_pred ceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeC
Q 011791 257 KVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS 308 (477)
Q Consensus 257 ~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~ 308 (477)
...+..-.++++|+.||.+|||+|+.+.|.+.++.++++ ++.+++..+
T Consensus 14 ~~~~G~~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~----~v~~~~~~~ 61 (175)
T 3gyk_A 14 APVLGNPEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADP----NVRLVYREW 61 (175)
T ss_dssp SCEEECTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT----TEEEEEEEC
T ss_pred CCCcCCCCCCEEEEEEECCCCccHHHHHHHHHHHHHhCC----CEEEEEEeC
Confidence 334445568999999999999999999999999888754 366666554
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A | Back alignment and structure |
|---|
Probab=98.73 E-value=3.8e-09 Score=90.66 Aligned_cols=69 Identities=14% Similarity=0.298 Sum_probs=48.9
Q ss_pred CEEEEEEecCC--CccchhhHHHHHHHHHHHhcCCCcEE--EEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 011791 106 KTIGLYFSMSS--YKASAEFTPRLVEVYEKLKGKGESFE--IVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 181 (477)
Q Consensus 106 k~vll~F~a~w--C~~C~~~~p~l~~l~~~~~~~g~~~~--vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (477)
+.++|+||++| |++|+.+.|.|.+++++| ++ +. ++.|++|. ...+++.|
T Consensus 35 ~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~---v~~~~~~Vd~d~-----------------------~~~la~~~ 87 (142)
T 2es7_A 35 GDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQ---FDWQVAVADLEQ-----------------------SEAIGDRF 87 (142)
T ss_dssp CSEEEEECCCSCC----CCHHHHHHHHHHTC-TT---SCCEEEEECHHH-----------------------HHHHHHTT
T ss_pred CCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cc---cceeEEEEECCC-----------------------CHHHHHhc
Confidence 34788899887 999999999999999998 43 55 66676552 24588899
Q ss_pred CcccCCeEEEECCCCCccccc
Q 011791 182 ELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 182 ~v~~~P~~~lid~~G~i~~~~ 202 (477)
+|.++||++++ ++|+++.+.
T Consensus 88 ~V~~iPT~~~f-k~G~~v~~~ 107 (142)
T 2es7_A 88 NVRRFPATLVF-TDGKLRGAL 107 (142)
T ss_dssp TCCSSSEEEEE-SCC----CE
T ss_pred CCCcCCeEEEE-eCCEEEEEE
Confidence 99999999999 799887654
|
| >3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.71 E-value=3e-08 Score=89.71 Aligned_cols=43 Identities=28% Similarity=0.369 Sum_probs=37.8
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 309 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d 309 (477)
.++++|+.||++|||+|+.+.|.+.++.+++.+ ++.++.+.++
T Consensus 24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~---~v~~~~~~~~ 66 (195)
T 3hd5_A 24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQ---DVVLKQVPIA 66 (195)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCT---TEEEEEEECC
T ss_pred CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCC---CeEEEEEecc
Confidence 489999999999999999999999999888765 3888888876
|
| >2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.1e-08 Score=78.32 Aligned_cols=65 Identities=22% Similarity=0.317 Sum_probs=47.9
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
++.||++||++|+.+.+.+.++.++++ +.+..+.+|.+.+ ..++.+.||++++|+
T Consensus 4 ~~~f~~~~C~~C~~~~~~l~~~~~~~~-----~~~~~~~v~~~~~--------------------~~~~~~~~gv~~vPt 58 (80)
T 2k8s_A 4 KAIFYHAGCPVCVSAEQAVANAIDPSK-----YTVEIVHLGTDKA--------------------RIAEAEKAGVKSVPA 58 (80)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHSCTTT-----EEEEEEETTTCSS--------------------THHHHHHHTCCEEEE
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHhcC-----CeEEEEEecCChh--------------------hHHHHHHcCCCcCCE
Confidence 567899999999999999988765543 4455566664311 135678899999999
Q ss_pred EEEECCCCcEEEe
Q 011791 349 LVAIGPSGRTITK 361 (477)
Q Consensus 349 ~~lid~~G~iv~~ 361 (477)
+++ +|+++..
T Consensus 59 ~~i---~g~~~~~ 68 (80)
T 2k8s_A 59 LVI---DGAAFHI 68 (80)
T ss_dssp EEE---TTEEEEE
T ss_pred EEE---CCEEEEe
Confidence 877 7887654
|
| >2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 | Back alignment and structure |
|---|
Probab=98.66 E-value=6.7e-09 Score=95.75 Aligned_cols=70 Identities=14% Similarity=0.164 Sum_probs=56.6
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+|++|+|+||++||++|+.+.|.|.+++++|. + +.++.|.++ + ..+++.|++
T Consensus 119 ~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~--~--v~f~~vd~~-~-----------------------~~l~~~~~i 170 (217)
T 2trc_P 119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP--M--VKFCKIRAS-N-----------------------TGAGDRFSS 170 (217)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT--T--SEEEEEEHH-H-----------------------HTCSTTSCG
T ss_pred CCcEEEEEEECCCCccHHHHHHHHHHHHHHCC--C--eEEEEEECC-c-----------------------HHHHHHCCC
Confidence 46999999999999999999999999998884 2 667777654 1 124567899
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++. +|+++.+.
T Consensus 171 ~~~PTl~~~~-~G~~v~~~ 188 (217)
T 2trc_P 171 DVLPTLLVYK-GGELISNF 188 (217)
T ss_dssp GGCSEEEEEE-TTEEEEEE
T ss_pred CCCCEEEEEE-CCEEEEEE
Confidence 9999999995 88887654
|
| >3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.7e-09 Score=88.70 Aligned_cols=76 Identities=13% Similarity=0.137 Sum_probs=52.7
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+...++|+|||+||++|+.+.+.+...|+.... +..+.++.|.++.+.. ..++..|+|
T Consensus 17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~-~~~~~l~~vdv~~~~~---------------------~~la~~~~V 74 (116)
T 3dml_A 17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDE-GRAAPVQRLQMRDPLP---------------------PGLELARPV 74 (116)
T ss_dssp --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHH-HHHSCEEEEETTSCCC---------------------TTCBCSSCC
T ss_pred cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhh-cccceEEEEECCCCCc---------------------hhHHHHCCC
Confidence 346799999999999999988755444432110 1125677888875421 124457889
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++||+++++ +|+.+.+-
T Consensus 75 ~g~PT~i~f~-~G~ev~Ri 92 (116)
T 3dml_A 75 TFTPTFVLMA-GDVESGRL 92 (116)
T ss_dssp CSSSEEEEEE-TTEEEEEE
T ss_pred CCCCEEEEEE-CCEEEeee
Confidence 9999999999 99988764
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-06 Score=91.77 Aligned_cols=68 Identities=15% Similarity=0.178 Sum_probs=57.4
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.++..++.||++||++|+.+.|.++++..++. ++.+..++++..+ ++...|+|
T Consensus 116 ~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~----~v~~~~vd~~~~~-----------------------~~~~~~~i 168 (521)
T 1hyu_A 116 DGDFEFETYYSLSCHNCPDVVQALNLMAVLNP----RIKHTAIDGGTFQ-----------------------NEITERNV 168 (521)
T ss_dssp CSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT----TEEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCcceEEEECCCCcCcHHHHHHHHHHHhHcC----ceEEEEEechhhH-----------------------HHHHHhCC
Confidence 46788999999999999999999999887764 4788888877544 68999999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
.++|++++ +|+.+..
T Consensus 169 ~svPt~~i---~g~~~~~ 183 (521)
T 1hyu_A 169 MGVPAVFV---NGKEFGQ 183 (521)
T ss_dssp CSSSEEEE---TTEEEEE
T ss_pred CccCEEEE---CCEEEec
Confidence 99999977 7888765
|
| >2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2.2e-07 Score=86.60 Aligned_cols=67 Identities=16% Similarity=0.251 Sum_probs=55.0
Q ss_pred CCCEEEEEEeC--CCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC---ChhHHHHHHhcCCCceeccCcchhHHHH
Q 011791 264 AGKTILLYFSA--HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR---DQTSFDEFFKGMPWLALPFGDARKASLS 338 (477)
Q Consensus 264 ~gk~vll~F~a--~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~---~~~~~~~~~~~~~~~~~p~~~d~~~~l~ 338 (477)
.+++|||+||| |||+ +.|.|.++++.++. .+++.|..|++|. +. ...++
T Consensus 21 ~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~-~~~v~~akVDvd~~g~~~---------------------~~~l~ 74 (240)
T 2qc7_A 21 KSKFVLVKFDTQYPYGE----KQDEFKRLAENSAS-SDDLLVAEVGISDYGDKL---------------------NMELS 74 (240)
T ss_dssp GCSEEEEEECCSSCCSH----HHHHHHHHHHHHTT-CTTEEEEEECCCCSSSCC---------------------SHHHH
T ss_pred CCCCEEEEEeCCCCCCc----chHHHHHHHHHhcC-CCCeEEEEEeCCcccchh---------------------hHHHH
Confidence 36899999999 9999 99999999999975 2357788777653 22 24799
Q ss_pred HhcCCC--CcceEEEECCCCc
Q 011791 339 RKFKVS--GIPMLVAIGPSGR 357 (477)
Q Consensus 339 ~~~~v~--~~Pt~~lid~~G~ 357 (477)
+.|+|+ ++||+++| ++|+
T Consensus 75 ~~~~V~~~~~PTl~~f-~~G~ 94 (240)
T 2qc7_A 75 EKYKLDKESYPVFYLF-RDGD 94 (240)
T ss_dssp HHTTCCGGGCSEEEEE-ETTC
T ss_pred HHcCCCCCCCCEEEEE-eCCC
Confidence 999999 99999999 6776
|
| >2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A | Back alignment and structure |
|---|
Probab=98.57 E-value=5.5e-08 Score=79.89 Aligned_cols=68 Identities=19% Similarity=0.332 Sum_probs=46.6
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
++++++ ||++||++|+.+.|.|.++..+ +.++.|+.+...... ...+.+.|++.
T Consensus 19 ~~~vv~-f~a~~C~~C~~~~~~l~~~~~~-------~~~v~v~~~~~~~~~------------------~~~l~~~~~v~ 72 (116)
T 2e7p_A 19 SAPVVV-FSKTYCGYCNRVKQLLTQVGAS-------YKVVELDELSDGSQL------------------QSALAHWTGRG 72 (116)
T ss_dssp SSSEEE-EECTTCHHHHHHHHHHHHHTCC-------CEEEEGGGSTTHHHH------------------HHHHHHHHSCC
T ss_pred CCCEEE-EECCCChhHHHHHHHHHHcCCC-------eEEEEccCCCChHHH------------------HHHHHHHhCCC
Confidence 456666 9999999999999988876322 344444433321110 13578889999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++|++ ++ +|+++..
T Consensus 73 ~~Pt~-~~--~g~~v~~ 86 (116)
T 2e7p_A 73 TVPNV-FI--GGKQIGG 86 (116)
T ss_dssp SSCEE-EE--TTEEEEC
T ss_pred CcCEE-EE--CCEEECC
Confidence 99999 55 6888765
|
| >2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 | Back alignment and structure |
|---|
Probab=98.55 E-value=1.7e-07 Score=81.06 Aligned_cols=74 Identities=16% Similarity=0.285 Sum_probs=53.4
Q ss_pred CCCEEEEEEecCCCccchhhHHHH---HHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (477)
+||+|+|+|++.||.+|+.+-... .++.+.+++. |.++-+.+|+. ....+.+.
T Consensus 41 ~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~---fv~v~~d~~~~---------------------~~~~l~~~ 96 (153)
T 2dlx_A 41 QNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREH---FIFWQVYHDSE---------------------EGQRYIQF 96 (153)
T ss_dssp HTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHT---EEEEEEESSSH---------------------HHHHHHHH
T ss_pred cCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcC---eEEEEEecCCH---------------------hHHHHHHH
Confidence 479999999999999999875332 3344444443 66666655431 12457789
Q ss_pred cCcccCCeEEEECCC-CCcccc
Q 011791 181 FELSTLPTLVIIGPD-GKTLHS 201 (477)
Q Consensus 181 ~~v~~~P~~~lid~~-G~i~~~ 201 (477)
|++.++|+++++|++ |+.+..
T Consensus 97 y~v~~~P~~~fld~~~G~~l~~ 118 (153)
T 2dlx_A 97 YKLGDFPYVSILDPRTGQKLVE 118 (153)
T ss_dssp HTCCSSSEEEEECTTTCCCCEE
T ss_pred cCCCCCCEEEEEeCCCCcEeee
Confidence 999999999999998 776644
|
| >3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.53 E-value=2.4e-07 Score=83.48 Aligned_cols=43 Identities=23% Similarity=0.372 Sum_probs=36.4
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 309 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d 309 (477)
.++++|+.||.+|||+|+.+.|.+.++.+++.++ +.+..+.+.
T Consensus 24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~---v~~~~~p~~ 66 (192)
T 3h93_A 24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPAD---VHFVRLPAL 66 (192)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTT---EEEEEEECC
T ss_pred CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCCC---eEEEEEehh
Confidence 4899999999999999999999999988887653 777766653
|
| >2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A | Back alignment and structure |
|---|
Probab=98.49 E-value=5.8e-07 Score=81.02 Aligned_cols=43 Identities=23% Similarity=0.311 Sum_probs=36.6
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 309 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d 309 (477)
.++++|+.||.+|||+|..+.|.|.++.++++. ++.+..+.+.
T Consensus 21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~---~v~~~~~p~~ 63 (195)
T 2znm_A 21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPS---DAYLRTEHVV 63 (195)
T ss_dssp SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCT---TEEEEEEECC
T ss_pred CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCC---ceEEEEeccc
Confidence 478999999999999999999999999888754 3777777763
|
| >1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=98.46 E-value=2.6e-07 Score=83.63 Aligned_cols=44 Identities=27% Similarity=0.452 Sum_probs=37.3
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHH---HHHHHHHHhcCCcEEEEEEeCCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDR 310 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~i~~d~ 310 (477)
.++++||.||+.|||||+++.|.| .++.+++++ ++.+..+.++.
T Consensus 112 ~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~---~v~~~~~~v~~ 158 (197)
T 1un2_A 112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE---GVKMTKYHVNF 158 (197)
T ss_dssp TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT---TCCEEEEECSS
T ss_pred CCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCC---CCEEEEeccCc
Confidence 368999999999999999999998 888888765 37788888764
|
| >1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A | Back alignment and structure |
|---|
Probab=98.45 E-value=4.5e-07 Score=69.83 Aligned_cols=66 Identities=15% Similarity=0.258 Sum_probs=49.3
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcC--CCCc
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK--VSGI 346 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~--v~~~ 346 (477)
++.|+++||++|+.+.+.|.++..+++ ++.+..++++.+.. ...++.+.++ +.++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~----~i~~~~vdi~~~~~-------------------~~~~l~~~~~~~~~~v 59 (85)
T 1ego_A 3 TVIFGRSGCPYCVRAKDLAEKLSNERD----DFQYQYVDIRAEGI-------------------TKEDLQQKAGKPVETV 59 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHS----SCEEEEECHHHHTC-------------------CSHHHHHHTCCCSCCS
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCC----CceEEEEecccChH-------------------HHHHHHHHhCCCCcee
Confidence 677999999999999999999887653 47777777653221 0135788888 9999
Q ss_pred ceEEEECCCCcEEE
Q 011791 347 PMLVAIGPSGRTIT 360 (477)
Q Consensus 347 Pt~~lid~~G~iv~ 360 (477)
|++ ++ +|+.+.
T Consensus 60 P~i-~~--~g~~i~ 70 (85)
T 1ego_A 60 PQI-FV--DQQHIG 70 (85)
T ss_dssp CEE-EE--TTEEEE
T ss_pred CeE-EE--CCEEEE
Confidence 998 45 577664
|
| >2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A | Back alignment and structure |
|---|
Probab=98.44 E-value=2.7e-07 Score=77.98 Aligned_cols=67 Identities=18% Similarity=0.264 Sum_probs=54.7
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++|+++|||+ |++|+...|.|.++.++|+++ +.++.|.+|... .+++.|||+
T Consensus 23 ~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk---~~f~~vd~d~~~-----------------------~~a~~~gi~ 75 (133)
T 2djk_A 23 GIPLAYIFAET-AEERKELSDKLKPIAEAQRGV---INFGTIDAKAFG-----------------------AHAGNLNLK 75 (133)
T ss_dssp TSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTT---SEEEEECTTTTG-----------------------GGTTTTTCC
T ss_pred CCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCe---EEEEEEchHHhH-----------------------HHHHHcCCC
Confidence 46799999999 899999999999999999875 677777766442 267789999
Q ss_pred c--CCeEEEECC-CCCc
Q 011791 185 T--LPTLVIIGP-DGKT 198 (477)
Q Consensus 185 ~--~P~~~lid~-~G~i 198 (477)
+ +|++++++. +|+.
T Consensus 76 ~~~iPtl~i~~~~~g~~ 92 (133)
T 2djk_A 76 TDKFPAFAIQEVAKNQK 92 (133)
T ss_dssp SSSSSEEEEECTTTCCB
T ss_pred cccCCEEEEEecCcCcc
Confidence 9 999999984 5655
|
| >3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.2e-07 Score=88.86 Aligned_cols=62 Identities=18% Similarity=0.420 Sum_probs=43.7
Q ss_pred EEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcc
Q 011791 268 ILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIP 347 (477)
Q Consensus 268 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P 347 (477)
.+++|||+||+||+++.|.++++++++ . .+++|.... .+.+.+++++|+|+++|
T Consensus 200 ~vV~F~A~WC~~Ck~l~p~le~lA~~l-------~--~Vd~d~~d~-----------------~~~~~~la~~~gI~~vP 253 (291)
T 3kp9_A 200 GGTMYGAYWCPHCQDQKELFGAAFDQV-------P--YVECSPNGP-----------------GTPQAQECTEAGITSYP 253 (291)
T ss_dssp TCEEEECTTCHHHHHHHHHHGGGGGGS-------C--EEESCSSCS-----------------SSCCCHHHHTTTCCSTT
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHc-------C--EEEEeecCc-----------------hhhHHHHHHHcCCcccC
Confidence 468999999999999999999886544 1 234442110 00124789999999999
Q ss_pred eEEEECCCCcE
Q 011791 348 MLVAIGPSGRT 358 (477)
Q Consensus 348 t~~lid~~G~i 358 (477)
|+++ +|+.
T Consensus 254 T~~i---~G~~ 261 (291)
T 3kp9_A 254 TWII---NGRT 261 (291)
T ss_dssp EEEE---TTEE
T ss_pred eEEE---CCEE
Confidence 9555 6764
|
| >1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=5.9e-07 Score=71.86 Aligned_cols=63 Identities=16% Similarity=0.308 Sum_probs=47.3
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
.+++++.|+++||++|+.+.+.|.++.+ ++.+..+++|... ..++.+.|+ .
T Consensus 15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~~-------~i~~~~vdi~~~~---------------------~~el~~~~g-~ 65 (100)
T 1wjk_A 15 ALPVLTLFTKAPCPLCDEAKEVLQPYKD-------RFILQEVDITLPE---------------------NSTWYERYK-F 65 (100)
T ss_dssp CCCEEEEEECSSCHHHHHHHHHTSTTSS-------SSEEEEEETTSST---------------------THHHHHHSS-S
T ss_pred CCCEEEEEeCCCCcchHHHHHHHHHhhh-------CCeEEEEECCCcc---------------------hHHHHHHHC-C
Confidence 4678899999999999999998876532 3677778887222 236788999 9
Q ss_pred CcceEEEECCCCcEE
Q 011791 345 GIPMLVAIGPSGRTI 359 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv 359 (477)
++|++ ++ +|+.+
T Consensus 66 ~vP~l-~~--~g~~~ 77 (100)
T 1wjk_A 66 DIPVF-HL--NGQFL 77 (100)
T ss_dssp SCSEE-EE--SSSEE
T ss_pred CCCEE-EE--CCEEE
Confidence 99976 44 57765
|
| >4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A | Back alignment and structure |
|---|
Probab=98.39 E-value=7.7e-06 Score=75.63 Aligned_cols=170 Identities=15% Similarity=0.134 Sum_probs=99.9
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
.++++|-|+++|| ....+.+.++++.+. . +.+. .+.+ ..+++.|++.
T Consensus 27 ~~v~vVgff~~~~---~~~~~~f~~~A~~l~--~--~~F~-~t~~-------------------------~~v~~~~~v~ 73 (227)
T 4f9z_D 27 TEVAVIGFFQDLE---IPAVPILHSMVQKFP--G--VSFG-ISTD-------------------------SEVLTHYNIT 73 (227)
T ss_dssp SSEEEEEECSCSC---STHHHHHHHHTTTCT--T--SEEE-EECC-------------------------HHHHHHTTCC
T ss_pred CCeEEEEEecCCC---chhHHHHHHHHHhCC--C--ceEE-EECC-------------------------HHHHHHcCCC
Confidence 4688899999985 456677777777663 2 3322 2222 3477889998
Q ss_pred cCCeEEEECCCC-C-ccccchhhHHhhcCCCCCCCChhhHHHHHHHHHHHhhhhhhhhhhccCCCcceeccCCCceeccc
Q 011791 185 TLPTLVIIGPDG-K-TLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKVPVSD 262 (477)
Q Consensus 185 ~~P~~~lid~~G-~-i~~~~~~~~i~~~g~~a~P~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~p~f~l~~~g~~~~l~~ 262 (477)
+ |+++++.+.. . ..+... .. | +++...+........ .|- +..++..+...--
T Consensus 74 ~-p~i~lfk~~~~~~~~~~~~--~~---g----~~~~~~l~~fi~~~~---------------~pl-v~e~t~~n~~~~~ 127 (227)
T 4f9z_D 74 G-NTICLFRLVDNEQLNLEDE--DI---E----SIDATKLSRFIEINS---------------LHM-VTEYNPVTVIGLF 127 (227)
T ss_dssp S-SEEEEEETTTTEEEEECHH--HH---H----TCCHHHHHHHHHHHC---------------CCS-EEECCHHHHHHHH
T ss_pred C-CeEEEEEecCccccccccc--cc---C----CCCHHHHHHHHHHhC---------------CCc-eeecCcccHHHHh
Confidence 7 9998887522 1 111110 00 0 124444444332211 011 1112211111000
Q ss_pred CCC-CEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhc
Q 011791 263 LAG-KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 341 (477)
Q Consensus 263 ~~g-k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 341 (477)
-.+ +.+++.|..+||+.|....+.+.+++++++++ +.++.++.+... ...+.+.|
T Consensus 128 ~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~---i~F~~vd~~~~~---------------------~~~~l~~f 183 (227)
T 4f9z_D 128 NSVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGK---ILFILVDSGMKE---------------------NGKVISFF 183 (227)
T ss_dssp HSSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTT---CEEEEEETTSGG---------------------GHHHHHHT
T ss_pred ccCCceEEEEEEcCCcchHHHHHHHHHHHHHHhhCC---EEEEEeCCccHh---------------------HHHHHHHc
Confidence 013 34556677889999999999999999999876 677777665322 23467889
Q ss_pred CCC--CcceEEEECCCCc
Q 011791 342 KVS--GIPMLVAIGPSGR 357 (477)
Q Consensus 342 ~v~--~~Pt~~lid~~G~ 357 (477)
|+. .+|++++++..+.
T Consensus 184 gl~~~~~P~~~i~~~~~~ 201 (227)
T 4f9z_D 184 KLKESQLPALAIYQTLDD 201 (227)
T ss_dssp TCCGGGCSEEEEEESSSC
T ss_pred CCCcccCCEEEEEECCCC
Confidence 998 8999999986554
|
| >1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1.1e-06 Score=80.91 Aligned_cols=90 Identities=10% Similarity=0.136 Sum_probs=58.3
Q ss_pred EecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC----CH---------------HHHHHh
Q 011791 98 ISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD----EE---------------ESFKRD 158 (477)
Q Consensus 98 v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~----~~---------------~~~~~~ 158 (477)
+.+....||++++.||++|||+|+.+.|.|.++.+ .+ +.|+++.+.. +. ..|.++
T Consensus 79 ~~~g~~~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~----~~--v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~ 152 (216)
T 1eej_A 79 IVYKAPQEKHVITVFTDITCGYCHKLHEQMADYNA----LG--ITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDV 152 (216)
T ss_dssp EEECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHH----TT--EEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHH
T ss_pred eeecCCCCCEEEEEEECCCCHHHHHHHHHHHHHHh----CC--cEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHH
Confidence 33444568999999999999999999999888754 24 7777765431 11 123333
Q ss_pred hcCCC--CccccCCchhHHHHHHHcCcccCCeEEEEC
Q 011791 159 LGSMP--WLALPFKDKSREKLARYFELSTLPTLVIIG 193 (477)
Q Consensus 159 ~~~~~--~~~~~~~~~~~~~l~~~~~v~~~P~~~lid 193 (477)
+.... .-......+....+++.|||+++|++++.|
T Consensus 153 ~~~~~~~~~~~~~~v~~~~~l~~~~gV~gtPt~v~~d 189 (216)
T 1eej_A 153 MAGKSVAPASCDVDIADHYALGVQLGVSGTPAVVLSN 189 (216)
T ss_dssp HTTCCCCCCCCSCCHHHHHHHHHHHTCCSSSEEECTT
T ss_pred HhCCCCChhHHHHHHHHHHHHHHHcCCCccCEEEEcC
Confidence 33221 111222334556789999999999986544
|
| >1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.1e-06 Score=80.35 Aligned_cols=86 Identities=21% Similarity=0.287 Sum_probs=55.1
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC----C---------------hhHHHHHHhcCCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR----D---------------QTSFDEFFKGMPW 324 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~----~---------------~~~~~~~~~~~~~ 324 (477)
.+|++++.||++|||+|+++.|.+.++.+ . +++|+++.... . ...+..++.....
T Consensus 85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~----~--~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~ 158 (211)
T 1t3b_A 85 NEKHVVTVFMDITCHYCHLLHQQLKEYND----L--GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLP 158 (211)
T ss_dssp TCSEEEEEEECTTCHHHHHHHTTHHHHHH----T--TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCC
T ss_pred CCCEEEEEEECCCCHhHHHHHHHHHHHHh----C--CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCC
Confidence 37899999999999999999999988533 1 36676654431 1 0112222222210
Q ss_pred c--eeccCcchhHHHHHhcCCCCcceEEEECCCCc
Q 011791 325 L--ALPFGDARKASLSRKFKVSGIPMLVAIGPSGR 357 (477)
Q Consensus 325 ~--~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~ 357 (477)
. ......+.+..+++.+||+++||+++ .+|+
T Consensus 159 ~~~~~~~~v~~~~~l~~~~gV~gTPt~vi--~nG~ 191 (211)
T 1t3b_A 159 KEVKTPNIVKKHYELGIQFGVRGTPSIVT--STGE 191 (211)
T ss_dssp SSCCCSSHHHHHHHHHHHHTCCSSCEEEC--TTSC
T ss_pred ChHHHHHHHHHHHHHHHHcCCCcCCEEEE--eCCE
Confidence 0 01112235667889999999999988 4676
|
| >2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A | Back alignment and structure |
|---|
Probab=98.33 E-value=6.5e-07 Score=73.36 Aligned_cols=67 Identities=19% Similarity=0.280 Sum_probs=44.1
Q ss_pred CEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCccc
Q 011791 106 KTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELST 185 (477)
Q Consensus 106 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 185 (477)
+.|++ ||++||++|+.+.|.|.++.. .+.++-|..+.+... ....+.+.|++.+
T Consensus 20 ~~vv~-f~a~~C~~C~~~~~~l~~~~~-------~~~~v~v~~~~~~~~------------------~~~~l~~~~~v~~ 73 (116)
T 2e7p_A 20 APVVV-FSKTYCGYCNRVKQLLTQVGA-------SYKVVELDELSDGSQ------------------LQSALAHWTGRGT 73 (116)
T ss_dssp SSEEE-EECTTCHHHHHHHHHHHHHTC-------CCEEEEGGGSTTHHH------------------HHHHHHHHHSCCS
T ss_pred CCEEE-EECCCChhHHHHHHHHHHcCC-------CeEEEEccCCCChHH------------------HHHHHHHHhCCCC
Confidence 44555 999999999999998877632 144433333322111 1245788999999
Q ss_pred CCeEEEECCCCCcccc
Q 011791 186 LPTLVIIGPDGKTLHS 201 (477)
Q Consensus 186 ~P~~~lid~~G~i~~~ 201 (477)
+|++ ++ +|+.+..
T Consensus 74 ~Pt~-~~--~g~~v~~ 86 (116)
T 2e7p_A 74 VPNV-FI--GGKQIGG 86 (116)
T ss_dssp SCEE-EE--TTEEEEC
T ss_pred cCEE-EE--CCEEECC
Confidence 9999 55 5776643
|
| >2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A | Back alignment and structure |
|---|
Probab=98.31 E-value=2.7e-06 Score=79.61 Aligned_cols=70 Identities=9% Similarity=0.149 Sum_probs=53.0
Q ss_pred CCCEEEEEEe--cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 011791 104 EGKTIGLYFS--MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 181 (477)
Q Consensus 104 ~gk~vll~F~--a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (477)
.+++|+|+|| |+||+ +.|.+.++.+.+++...++.|+-|.+|... ......+++.|
T Consensus 32 ~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g------------------~~~n~~la~~~ 89 (248)
T 2c0g_A 32 RFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYG------------------ELENKALGDRY 89 (248)
T ss_dssp TSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSST------------------TCTTHHHHHHT
T ss_pred cCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCccc------------------ccccHHHHHHh
Confidence 4579999999 99998 889999999998751123777777776400 00024588999
Q ss_pred Ccc--cCCeEEEECCCCC
Q 011791 182 ELS--TLPTLVIIGPDGK 197 (477)
Q Consensus 182 ~v~--~~P~~~lid~~G~ 197 (477)
+|. ++||++++. |+
T Consensus 90 ~V~~~~~PTl~~F~--G~ 105 (248)
T 2c0g_A 90 KVDDKNFPSIFLFK--GN 105 (248)
T ss_dssp TCCTTSCCEEEEES--SS
T ss_pred CCCcCCCCeEEEEe--CC
Confidence 999 999999996 66
|
| >1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A | Back alignment and structure |
|---|
Probab=98.30 E-value=3.1e-06 Score=79.15 Aligned_cols=91 Identities=9% Similarity=0.139 Sum_probs=58.4
Q ss_pred CCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC---C-------------hhH-HHHHHhcCC--
Q 011791 263 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR---D-------------QTS-FDEFFKGMP-- 323 (477)
Q Consensus 263 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~---~-------------~~~-~~~~~~~~~-- 323 (477)
-.++.+|+.|+.+|||+|+++.+.+.++.+. .++.|+.+.+.- . +.. |......+.
T Consensus 95 ~~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~-----g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~ 169 (241)
T 1v58_A 95 KDAPVIVYVFADPFCPYCKQFWQQARPWVDS-----GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKL 169 (241)
T ss_dssp TTCSEEEEEEECTTCHHHHHHHHHHHHHHHT-----TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCC
T ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHHhC-----CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccC
Confidence 3478999999999999999999998876553 147777766521 1 111 111111110
Q ss_pred -Cce-------eccCcchhHHHHHhcCCCCcceEEEECCCCcE
Q 011791 324 -WLA-------LPFGDARKASLSRKFKVSGIPMLVAIGPSGRT 358 (477)
Q Consensus 324 -~~~-------~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i 358 (477)
... .....+.+..+.+.+||+++||+++.+.+|++
T Consensus 170 ~l~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~ 212 (241)
T 1v58_A 170 KLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL 212 (241)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE
T ss_pred CCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE
Confidence 000 00012344568889999999999999888975
|
| >3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.26 E-value=4.9e-06 Score=73.43 Aligned_cols=50 Identities=8% Similarity=-0.001 Sum_probs=38.5
Q ss_pred CCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEc
Q 011791 95 GRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL 148 (477)
Q Consensus 95 g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~ 148 (477)
+....+..-.+|++++.||..|||+|+.+.|.|.++.+++.+ +.|+++.+
T Consensus 12 ~~~~~~G~~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~----v~~~~~~~ 61 (175)
T 3gyk_A 12 PNAPVLGNPEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPN----VRLVYREW 61 (175)
T ss_dssp TTSCEEECTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----EEEEEEEC
T ss_pred CCCCCcCCCCCCEEEEEEECCCCccHHHHHHHHHHHHHhCCC----EEEEEEeC
Confidence 334455566789999999999999999999999999887643 55555443
|
| >2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=98.25 E-value=9.1e-06 Score=72.87 Aligned_cols=42 Identities=21% Similarity=0.337 Sum_probs=35.7
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS 308 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~ 308 (477)
.++++|+.||.+|||+|..+.+.+.++.+++.. ++.+..+.+
T Consensus 24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~---~v~~~~~p~ 65 (193)
T 2rem_A 24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAK---DVRFTLVPA 65 (193)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSCT---TEEEEEEEC
T ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHhcCC---ceEEEEeCc
Confidence 478899999999999999999999988887754 477777765
|
| >2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=98.23 E-value=4.2e-07 Score=69.36 Aligned_cols=64 Identities=17% Similarity=0.315 Sum_probs=45.3
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
++.||++||++|+...+.|.++.+++ + +.+..+.+|.+.+ ...+++.||+.++|+
T Consensus 4 ~~~f~~~~C~~C~~~~~~l~~~~~~~---~--~~~~~~~v~~~~~--------------------~~~~~~~~gv~~vPt 58 (80)
T 2k8s_A 4 KAIFYHAGCPVCVSAEQAVANAIDPS---K--YTVEIVHLGTDKA--------------------RIAEAEKAGVKSVPA 58 (80)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHSCTT---T--EEEEEEETTTCSS--------------------THHHHHHHTCCEEEE
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHhc---C--CeEEEEEecCChh--------------------hHHHHHHcCCCcCCE
Confidence 56799999999999999887765443 4 4555666653211 134667899999999
Q ss_pred EEEECCCCCccc
Q 011791 189 LVIIGPDGKTLH 200 (477)
Q Consensus 189 ~~lid~~G~i~~ 200 (477)
+++ +|+++.
T Consensus 59 ~~i---~g~~~~ 67 (80)
T 2k8s_A 59 LVI---DGAAFH 67 (80)
T ss_dssp EEE---TTEEEE
T ss_pred EEE---CCEEEE
Confidence 877 677554
|
| >1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A | Back alignment and structure |
|---|
Probab=98.20 E-value=9.8e-07 Score=68.56 Aligned_cols=58 Identities=17% Similarity=0.274 Sum_probs=42.4
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
++.||++||++|+...|.|.++...+ +.-|.+|.+++ +++.||++ +|+
T Consensus 3 vv~f~a~~C~~C~~~~~~L~~~~~~~--------~~~vdid~~~~-----------------------l~~~~g~~-vPt 50 (87)
T 1ttz_A 3 LTLYQRDDCHLCDQAVEALAQARAGA--------FFSVFIDDDAA-----------------------LESAYGLR-VPV 50 (87)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCCC--------EEEEECTTCHH-----------------------HHHHHTTT-CSE
T ss_pred EEEEECCCCchHHHHHHHHHHHHHhh--------eEEEECCCCHH-----------------------HHHHhCCC-cCe
Confidence 67899999999999888876553221 34566665543 66788998 999
Q ss_pred EEEECCCCCccc
Q 011791 189 LVIIGPDGKTLH 200 (477)
Q Consensus 189 ~~lid~~G~i~~ 200 (477)
+++ .+|+.+.
T Consensus 51 l~~--~~G~~v~ 60 (87)
T 1ttz_A 51 LRD--PMGRELD 60 (87)
T ss_dssp EEC--TTCCEEE
T ss_pred EEE--ECCEEEe
Confidence 887 5788763
|
| >3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.3e-05 Score=72.08 Aligned_cols=44 Identities=14% Similarity=0.106 Sum_probs=38.5
Q ss_pred CCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC
Q 011791 103 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 149 (477)
Q Consensus 103 l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D 149 (477)
-.|+++++.||++|||+|+.+.|.|.++.+++.++ +.++.+.++
T Consensus 23 ~~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~---v~~~~~~~~ 66 (195)
T 3hd5_A 23 TPGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQD---VVLKQVPIA 66 (195)
T ss_dssp STTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTT---EEEEEEECC
T ss_pred CCCCeEEEEEECCCCccHHHhhHHHHHHHHHCCCC---eEEEEEecc
Confidence 35899999999999999999999999999888763 888888876
|
| >1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=98.14 E-value=2.9e-05 Score=68.44 Aligned_cols=51 Identities=14% Similarity=0.292 Sum_probs=40.1
Q ss_pred eecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC
Q 011791 258 VPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 309 (477)
Q Consensus 258 ~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d 309 (477)
+.+..-.++++|+.|+..+||+|+.+.+.+.++.++|.+. +++++++..+.
T Consensus 20 ~~~G~~~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~-~~v~~~~~~~~ 70 (175)
T 1z6m_A 20 LHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKS-GKVERIIKLFD 70 (175)
T ss_dssp EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHT-TSEEEEEEECC
T ss_pred cccCCCCCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhC-CcEEEEEEeCC
Confidence 3444446889999999999999999999999998888432 24888887664
|
| >2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.3e-06 Score=69.04 Aligned_cols=63 Identities=22% Similarity=0.364 Sum_probs=49.4
Q ss_pred EEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccC
Q 011791 107 TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTL 186 (477)
Q Consensus 107 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 186 (477)
.+++.||++||++|....+.|.++.+++ + +.+.-|.+|.+++ +++.|+++ +
T Consensus 30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~---~--i~~~~vDId~d~~-----------------------l~~~ygv~-V 80 (107)
T 2fgx_A 30 RKLVVYGREGCHLCEEMIASLRVLQKKS---W--FELEVINIDGNEH-----------------------LTRLYNDR-V 80 (107)
T ss_dssp CCEEEEECSSCHHHHHHHHHHHHHHHHS---C--CCCEEEETTTCHH-----------------------HHHHSTTS-C
T ss_pred cEEEEEeCCCChhHHHHHHHHHHHHHhc---C--CeEEEEECCCCHH-----------------------HHHHhCCC-C
Confidence 4688899999999999999999988775 3 5666777776543 56788987 9
Q ss_pred CeEEEECCCCCcc
Q 011791 187 PTLVIIGPDGKTL 199 (477)
Q Consensus 187 P~~~lid~~G~i~ 199 (477)
|+++++. +|+.+
T Consensus 81 P~l~~~~-dG~~v 92 (107)
T 2fgx_A 81 PVLFAVN-EDKEL 92 (107)
T ss_dssp SEEEETT-TTEEE
T ss_pred ceEEEEE-CCEEE
Confidence 9987664 57655
|
| >3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A | Back alignment and structure |
|---|
Probab=98.13 E-value=1.3e-05 Score=72.06 Aligned_cols=43 Identities=28% Similarity=0.407 Sum_probs=36.5
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 309 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d 309 (477)
.++++|+.||+.|||+|+.+.|.+.++.+++.++ +.+..+.++
T Consensus 23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~---v~~~~~p~~ 65 (193)
T 3hz8_A 23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDD---MYLRTEHVV 65 (193)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCTT---EEEEEEECC
T ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCCC---eEEEEecCC
Confidence 3799999999999999999999999988877653 777777765
|
| >1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=1.6e-05 Score=72.55 Aligned_cols=87 Identities=14% Similarity=0.129 Sum_probs=54.0
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC----C---------------HHHHHHhhcCCCC
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD----E---------------EESFKRDLGSMPW 164 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~----~---------------~~~~~~~~~~~~~ 164 (477)
.+|++++.||++|||+|+.+.|.|.++.+ .+ +.|+++...- + ...|.+++.....
T Consensus 85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~----~~--v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~ 158 (211)
T 1t3b_A 85 NEKHVVTVFMDITCHYCHLLHQQLKEYND----LG--ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLP 158 (211)
T ss_dssp TCSEEEEEEECTTCHHHHHHHTTHHHHHH----TT--EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCC
T ss_pred CCCEEEEEEECCCCHhHHHHHHHHHHHHh----CC--cEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCC
Confidence 57899999999999999999999887533 24 6666654421 1 1112222221110
Q ss_pred --ccccCCchhHHHHHHHcCcccCCeEEEECCCCCc
Q 011791 165 --LALPFKDKSREKLARYFELSTLPTLVIIGPDGKT 198 (477)
Q Consensus 165 --~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i 198 (477)
-......+....+.+.+||+++|++++ .+|+.
T Consensus 159 ~~~~~~~~v~~~~~l~~~~gV~gTPt~vi--~nG~~ 192 (211)
T 1t3b_A 159 KEVKTPNIVKKHYELGIQFGVRGTPSIVT--STGEL 192 (211)
T ss_dssp SSCCCSSHHHHHHHHHHHHTCCSSCEEEC--TTSCC
T ss_pred ChHHHHHHHHHHHHHHHHcCCCcCCEEEE--eCCEE
Confidence 001111234467889999999999888 35653
|
| >1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.02 E-value=1.3e-05 Score=60.88 Aligned_cols=59 Identities=15% Similarity=0.295 Sum_probs=41.2
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
++.|+++||++|+...+.|.++ ++.+..++++.+.+. ....+.+++.++|+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~~---------~i~~~~vdi~~~~~~--------------------~~~~~~~g~~~vP~ 53 (81)
T 1h75_A 3 ITIYTRNDCVQCHATKRAMENR---------GFDFEMINVDRVPEA--------------------AEALRAQGFRQLPV 53 (81)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT---------TCCCEEEETTTCHHH--------------------HHHHHHTTCCSSCE
T ss_pred EEEEcCCCChhHHHHHHHHHHC---------CCCeEEEECCCCHHH--------------------HHHHHHhCCCccCE
Confidence 5679999999999999888752 355677788765421 11223589999999
Q ss_pred EEEECCCCcEE
Q 011791 349 LVAIGPSGRTI 359 (477)
Q Consensus 349 ~~lid~~G~iv 359 (477)
++ + +|+.+
T Consensus 54 ~~-~--~g~~~ 61 (81)
T 1h75_A 54 VI-A--GDLSW 61 (81)
T ss_dssp EE-E--TTEEE
T ss_pred EE-E--CCEEE
Confidence 84 4 46543
|
| >2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A | Back alignment and structure |
|---|
Probab=98.00 E-value=1.9e-05 Score=70.94 Aligned_cols=43 Identities=19% Similarity=0.081 Sum_probs=37.0
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 149 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D 149 (477)
.++++++.||..|||+|..+.|.|.++.+++..+ +.+..+.+.
T Consensus 21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~---v~~~~~p~~ 63 (195)
T 2znm_A 21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSD---AYLRTEHVV 63 (195)
T ss_dssp SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCTT---EEEEEEECC
T ss_pred CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCCc---eEEEEeccc
Confidence 5789999999999999999999999999888652 777777763
|
| >3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=97.99 E-value=3.9e-05 Score=68.73 Aligned_cols=43 Identities=21% Similarity=0.172 Sum_probs=36.9
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 149 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D 149 (477)
.++++++.||+.|||+|..+.|.|.++.+++.++ +.+..+.+.
T Consensus 24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~---v~~~~~p~~ 66 (192)
T 3h93_A 24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPAD---VHFVRLPAL 66 (192)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTT---EEEEEEECC
T ss_pred CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCCC---eEEEEEehh
Confidence 6899999999999999999999999998888663 777766664
|
| >1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=2.4e-05 Score=58.24 Aligned_cols=58 Identities=16% Similarity=0.243 Sum_probs=40.8
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
++.|+++||++|++..+.|.++ ++.+..++++.+.+. ....+.+++.++|+
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~---------~i~~~~~di~~~~~~--------------------~~~~~~~~~~~vP~ 53 (75)
T 1r7h_A 3 ITLYTKPACVQCTATKKALDRA---------GLAYNTVDISLDDEA--------------------RDYVMALGYVQAPV 53 (75)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT---------TCCCEEEETTTCHHH--------------------HHHHHHTTCBCCCE
T ss_pred EEEEeCCCChHHHHHHHHHHHc---------CCCcEEEECCCCHHH--------------------HHHHHHcCCCccCE
Confidence 5678999999999999888753 255666777755321 11124689999999
Q ss_pred EEEECCCCcE
Q 011791 349 LVAIGPSGRT 358 (477)
Q Consensus 349 ~~lid~~G~i 358 (477)
++ + +|+.
T Consensus 54 l~-~--~g~~ 60 (75)
T 1r7h_A 54 VE-V--DGEH 60 (75)
T ss_dssp EE-E--TTEE
T ss_pred EE-E--CCeE
Confidence 87 3 5664
|
| >1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A | Back alignment and structure |
|---|
Probab=97.90 E-value=9.5e-06 Score=62.17 Aligned_cols=66 Identities=14% Similarity=0.234 Sum_probs=47.6
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC--cccC
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE--LSTL 186 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--v~~~ 186 (477)
++.|+++||++|+...+.|.++..+++ + +.+..|.++.+.+ ....+.+.+| +.++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~--~--i~~~~vdi~~~~~-------------------~~~~l~~~~~~~~~~v 59 (85)
T 1ego_A 3 TVIFGRSGCPYCVRAKDLAEKLSNERD--D--FQYQYVDIRAEGI-------------------TKEDLQQKAGKPVETV 59 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHS--S--CEEEEECHHHHTC-------------------CSHHHHHHTCCCSCCS
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCC--C--ceEEEEecccChH-------------------HHHHHHHHhCCCCcee
Confidence 577999999999999999999887764 3 6777776653210 0134777888 8999
Q ss_pred CeEEEECCCCCccc
Q 011791 187 PTLVIIGPDGKTLH 200 (477)
Q Consensus 187 P~~~lid~~G~i~~ 200 (477)
|+++ + +|+.+.
T Consensus 60 P~i~-~--~g~~i~ 70 (85)
T 1ego_A 60 PQIF-V--DQQHIG 70 (85)
T ss_dssp CEEE-E--TTEEEE
T ss_pred CeEE-E--CCEEEE
Confidence 9985 4 466553
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=97.86 E-value=3.1e-05 Score=80.78 Aligned_cols=68 Identities=10% Similarity=0.025 Sum_probs=55.3
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.++..++.||++||+||+...|.|.++...+. . +.+.-|..|..+ .+++.|++
T Consensus 116 ~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~--~--v~~~~vd~~~~~-----------------------~~~~~~~i 168 (521)
T 1hyu_A 116 DGDFEFETYYSLSCHNCPDVVQALNLMAVLNP--R--IKHTAIDGGTFQ-----------------------NEITERNV 168 (521)
T ss_dssp CSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT--T--EEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCcceEEEECCCCcCcHHHHHHHHHHHhHcC--c--eEEEEEechhhH-----------------------HHHHHhCC
Confidence 46788999999999999999999999987764 2 777777776443 47889999
Q ss_pred ccCCeEEEECCCCCcccc
Q 011791 184 STLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~ 201 (477)
.++|++++ +|+.+..
T Consensus 169 ~svPt~~i---~g~~~~~ 183 (521)
T 1hyu_A 169 MGVPAVFV---NGKEFGQ 183 (521)
T ss_dssp CSSSEEEE---TTEEEEE
T ss_pred CccCEEEE---CCEEEec
Confidence 99999977 7776654
|
| >1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=97.85 E-value=1.3e-05 Score=72.44 Aligned_cols=45 Identities=18% Similarity=0.070 Sum_probs=36.8
Q ss_pred CCCEEEEEEecCCCccchhhHHHH---HHHHHHHhcCCCcEEEEEEEcCCC
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDE 151 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~g~~~~vv~is~D~~ 151 (477)
.+++++|.||+.|||+|+.+.|.| .++.+++.++ +.+.-+.++..
T Consensus 112 ~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~---v~~~~~~v~~~ 159 (197)
T 1un2_A 112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEG---VKMTKYHVNFM 159 (197)
T ss_dssp TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTT---CCEEEEECSSS
T ss_pred CCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCC---CEEEEeccCcC
Confidence 468899999999999999999988 8888777643 67777777643
|
| >2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B | Back alignment and structure |
|---|
Probab=97.85 E-value=1.3e-05 Score=65.56 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=44.0
Q ss_pred EEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEE---EEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 267 TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLE---VVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 267 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~---iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
..++.|+++||++|++..+.|.++ ++. +..+++|.+.+. ......+.+.+|+
T Consensus 19 ~~vv~f~~~~Cp~C~~~~~~L~~~---------~~~~~~~~~vdi~~~~~~----------------~~~~~~l~~~~g~ 73 (114)
T 2hze_A 19 NKVTIFVKYTCPFCRNALDILNKF---------SFKRGAYEIVDIKEFKPE----------------NELRDYFEQITGG 73 (114)
T ss_dssp TCEEEEECTTCHHHHHHHHHHTTS---------CBCTTSEEEEEGGGSSSH----------------HHHHHHHHHHHSC
T ss_pred CCEEEEEeCCChhHHHHHHHHHHc---------CCCcCceEEEEccCCCCh----------------HHHHHHHHHHhCC
Confidence 346779999999999999887653 233 555666644200 0012357788999
Q ss_pred CCcceEEEECCCCcEEE
Q 011791 344 SGIPMLVAIGPSGRTIT 360 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~ 360 (477)
.++|+++ + +|+.+.
T Consensus 74 ~~vP~v~-i--~g~~ig 87 (114)
T 2hze_A 74 KTVPRIF-F--GKTSIG 87 (114)
T ss_dssp CSSCEEE-E--TTEEEE
T ss_pred CCcCEEE-E--CCEEEe
Confidence 9999874 4 587765
|
| >1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A | Back alignment and structure |
|---|
Probab=97.84 E-value=4.3e-05 Score=71.29 Aligned_cols=96 Identities=11% Similarity=0.070 Sum_probs=59.4
Q ss_pred EecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC---CC-------------HHH-HHHhhc
Q 011791 98 ISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD---DE-------------EES-FKRDLG 160 (477)
Q Consensus 98 v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D---~~-------------~~~-~~~~~~ 160 (477)
+.+..-.+|++++.|+.+|||+|+.+.+.+.++.+. | ++.|+.+.+. .+ +.. |..+..
T Consensus 90 i~~G~~~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~----g-~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~ 164 (241)
T 1v58_A 90 LLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDS----G-KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEA 164 (241)
T ss_dssp EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHT----T-SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHH
T ss_pred ceECCCCCCeEEEEEECCCChhHHHHHHHHHHHHhC----C-cEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHH
Confidence 444445678999999999999999999988876653 2 3777666552 11 111 111111
Q ss_pred CCC--Ccc--------ccCCchhHHHHHHHcCcccCCeEEEECCCCCc
Q 011791 161 SMP--WLA--------LPFKDKSREKLARYFELSTLPTLVIIGPDGKT 198 (477)
Q Consensus 161 ~~~--~~~--------~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i 198 (477)
.+. -+. +....+....+.+.+||+++|++++.+.+|++
T Consensus 165 ~~~~~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~ 212 (241)
T 1v58_A 165 SGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL 212 (241)
T ss_dssp TTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE
T ss_pred HhccCCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE
Confidence 110 000 00011233567889999999999999888864
|
| >1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=2.9e-05 Score=62.17 Aligned_cols=65 Identities=18% Similarity=0.237 Sum_probs=43.0
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCCh--hHHHHHHhcCCCceeccCcchhHHHHHhcCCCCc
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ--TSFDEFFKGMPWLALPFGDARKASLSRKFKVSGI 346 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~--~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~ 346 (477)
++.|+++||++|+++.+.|.++...+ ++ +..++++.+. .+. ...+.+.+++.++
T Consensus 14 v~~f~~~~C~~C~~~~~~L~~~~~~~----~~--~~~vdi~~~~~~~~~------------------~~~l~~~~g~~~v 69 (105)
T 1kte_A 14 VVVFIKPTCPFCRKTQELLSQLPFKE----GL--LEFVDITATSDTNEI------------------QDYLQQLTGARTV 69 (105)
T ss_dssp EEEEECSSCHHHHHHHHHHHHSCBCT----TS--EEEEEGGGSTTHHHH------------------HHHHHHHHSCCCS
T ss_pred EEEEEcCCCHhHHHHHHHHHHcCCCC----Cc--cEEEEccCCCCHHHH------------------HHHHHHHhCCCCc
Confidence 56699999999999999887643222 12 4445655432 111 1256778899999
Q ss_pred ceEEEECCCCcEEE
Q 011791 347 PMLVAIGPSGRTIT 360 (477)
Q Consensus 347 Pt~~lid~~G~iv~ 360 (477)
|+++ + +|+.+.
T Consensus 70 P~i~-~--~g~~i~ 80 (105)
T 1kte_A 70 PRVF-I--GKECIG 80 (105)
T ss_dssp CEEE-E--TTEEEE
T ss_pred CeEE-E--CCEEEe
Confidence 9974 4 577765
|
| >2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A | Back alignment and structure |
|---|
Probab=97.79 E-value=6.3e-05 Score=69.96 Aligned_cols=70 Identities=16% Similarity=0.276 Sum_probs=52.5
Q ss_pred CCCEEEEEEec--CCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 011791 104 EGKTIGLYFSM--SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 181 (477)
Q Consensus 104 ~gk~vll~F~a--~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (477)
.+++|+|+||| +||+ +.|.+.++.+.+++. .++.|+.|.+|+.- ......+++.|
T Consensus 21 ~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~-~~v~~akVDvd~~g------------------~~~~~~l~~~~ 77 (240)
T 2qc7_A 21 KSKFVLVKFDTQYPYGE----KQDEFKRLAENSASS-DDLLVAEVGISDYG------------------DKLNMELSEKY 77 (240)
T ss_dssp GCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTC-TTEEEEEECCCCSS------------------SCCSHHHHHHT
T ss_pred CCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCC-CCeEEEEEeCCccc------------------chhhHHHHHHc
Confidence 35799999999 9998 889999999999753 23777777765300 00124589999
Q ss_pred Ccc--cCCeEEEECCCCC
Q 011791 182 ELS--TLPTLVIIGPDGK 197 (477)
Q Consensus 182 ~v~--~~P~~~lid~~G~ 197 (477)
+|. ++||++++. +|+
T Consensus 78 ~V~~~~~PTl~~f~-~G~ 94 (240)
T 2qc7_A 78 KLDKESYPVFYLFR-DGD 94 (240)
T ss_dssp TCCGGGCSEEEEEE-TTC
T ss_pred CCCCCCCCEEEEEe-CCC
Confidence 999 999999995 555
|
| >2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00021 Score=63.77 Aligned_cols=42 Identities=14% Similarity=0.093 Sum_probs=35.9
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL 148 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~ 148 (477)
.++++++.||..+||+|..+.+.|.++.+++.+ ++.+..+.+
T Consensus 24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~---~v~~~~~p~ 65 (193)
T 2rem_A 24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAK---DVRFTLVPA 65 (193)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSCT---TEEEEEEEC
T ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHhcCC---ceEEEEeCc
Confidence 678899999999999999999999998888754 377777766
|
| >3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00021 Score=63.70 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=28.5
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHH
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKI 294 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~ 294 (477)
++++||.|+..|||+|+++.|.+.++.+++
T Consensus 22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~ 51 (185)
T 3feu_A 22 GMAPVTEVFALSCGHCRNMENFLPVISQEA 51 (185)
T ss_dssp CCCSEEEEECTTCHHHHHHGGGHHHHHHHH
T ss_pred CCCEEEEEECCCChhHHHhhHHHHHHHHHh
Confidence 689999999999999999999999998888
|
| >3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00018 Score=57.44 Aligned_cols=67 Identities=15% Similarity=0.235 Sum_probs=40.2
Q ss_pred EEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCC-hhHHHHHHhcCCCceeccCcchhHHHHHhcCCCC
Q 011791 267 TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD-QTSFDEFFKGMPWLALPFGDARKASLSRKFKVSG 345 (477)
Q Consensus 267 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~-~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~ 345 (477)
..++.|+++|||+|++..+.|.++ ++.+-.+.++.. .++..++. ..+.+.+++.+
T Consensus 22 ~~v~ly~~~~Cp~C~~ak~~L~~~---------~i~y~~vdI~~~~~~~~~~~~---------------~~l~~~~g~~~ 77 (103)
T 3nzn_A 22 GKVIMYGLSTCVWCKKTKKLLTDL---------GVDFDYVYVDRLEGKEEEEAV---------------EEVRRFNPSVS 77 (103)
T ss_dssp SCEEEEECSSCHHHHHHHHHHHHH---------TBCEEEEEGGGCCHHHHHHHH---------------HHHHHHCTTCC
T ss_pred CeEEEEcCCCCchHHHHHHHHHHc---------CCCcEEEEeeccCcccHHHHH---------------HHHHHhCCCCc
Confidence 345669999999999999888764 133344455532 21111111 12345578999
Q ss_pred cceEEEECCCCcEE
Q 011791 346 IPMLVAIGPSGRTI 359 (477)
Q Consensus 346 ~Pt~~lid~~G~iv 359 (477)
+|++++ + +|+.+
T Consensus 78 vP~l~i-~-~~~~i 89 (103)
T 3nzn_A 78 FPTTII-N-DEKAI 89 (103)
T ss_dssp SCEEEE-T-TTEEE
T ss_pred cCEEEE-C-CCEEE
Confidence 999876 2 24554
|
| >2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.67 E-value=9e-05 Score=62.02 Aligned_cols=61 Identities=18% Similarity=0.271 Sum_probs=42.1
Q ss_pred EEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCCh--hHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 271 YFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ--TSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 271 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~--~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
.|+++||++|+++.+.|.++. +.+..+++|.+. .++ ...+.+.+++.++|+
T Consensus 31 vf~~~~Cp~C~~~~~~L~~~~---------i~~~~vdid~~~~~~~~------------------~~~l~~~~g~~~vP~ 83 (130)
T 2cq9_A 31 IFSKTSCSYCTMAKKLFHDMN---------VNYKVVELDLLEYGNQF------------------QDALYKMTGERTVPR 83 (130)
T ss_dssp EEECSSCSHHHHHHHHHHHHT---------CCCEEEETTTSTTHHHH------------------HHHHHHHHSSCCSSE
T ss_pred EEEcCCChHHHHHHHHHHHcC---------CCcEEEECcCCcCcHHH------------------HHHHHHHhCCCCcCE
Confidence 399999999999999887641 334556666441 111 124778889999999
Q ss_pred EEEECCCCcEEEe
Q 011791 349 LVAIGPSGRTITK 361 (477)
Q Consensus 349 ~~lid~~G~iv~~ 361 (477)
++ + +|+.+..
T Consensus 84 l~-i--~G~~igg 93 (130)
T 2cq9_A 84 IF-V--NGTFIGG 93 (130)
T ss_dssp EE-E--TTEEEEE
T ss_pred EE-E--CCEEEcC
Confidence 85 4 6777653
|
| >2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00026 Score=55.24 Aligned_cols=62 Identities=15% Similarity=0.309 Sum_probs=41.8
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHh-cCCCCcc
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK-FKVSGIP 347 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~-~~v~~~P 347 (477)
++.|+.+|||+|++....|.+. ++.+..++++.+.+..+ .+.+. .|.+.+|
T Consensus 6 I~vYs~~~Cp~C~~aK~~L~~~---------gi~y~~idi~~d~~~~~-------------------~~~~~~~G~~tVP 57 (92)
T 2lqo_A 6 LTIYTTSWCGYCLRLKTALTAN---------RIAYDEVDIEHNRAAAE-------------------FVGSVNGGNRTVP 57 (92)
T ss_dssp EEEEECTTCSSHHHHHHHHHHT---------TCCCEEEETTTCHHHHH-------------------HHHHHSSSSSCSC
T ss_pred EEEEcCCCCHhHHHHHHHHHhc---------CCceEEEEcCCCHHHHH-------------------HHHHHcCCCCEeC
Confidence 4568899999999988777542 45666778887654322 22222 3788999
Q ss_pred eEEEECCCCcEEE
Q 011791 348 MLVAIGPSGRTIT 360 (477)
Q Consensus 348 t~~lid~~G~iv~ 360 (477)
++++ .||.++.
T Consensus 58 ~I~i--~Dg~~l~ 68 (92)
T 2lqo_A 58 TVKF--ADGSTLT 68 (92)
T ss_dssp EEEE--TTSCEEE
T ss_pred EEEE--eCCEEEe
Confidence 8765 4787764
|
| >3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00033 Score=59.86 Aligned_cols=86 Identities=24% Similarity=0.375 Sum_probs=55.0
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC-----CCh--------------hHHHHHHhcCCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-----RDQ--------------TSFDEFFKGMPW 324 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d-----~~~--------------~~~~~~~~~~~~ 324 (477)
.++.+|+.|+.++||+|+++.+.+.++ .++.|+++..- .+. ..|...+.....
T Consensus 13 ~a~~~vv~f~D~~Cp~C~~~~~~l~~l--------~~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~ 84 (147)
T 3gv1_A 13 NGKLKVAVFSDPDCPFCKRLEHEFEKM--------TDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKF 84 (147)
T ss_dssp TCCEEEEEEECTTCHHHHHHHHHHTTC--------CSEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCC
T ss_pred CCCEEEEEEECCCChhHHHHHHHHhhc--------CceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 478999999999999999999987653 24777765432 111 123332221110
Q ss_pred c----eeccCcchhHHHHHhcCCCCcceEEEECCCCcEE
Q 011791 325 L----ALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 359 (477)
Q Consensus 325 ~----~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv 359 (477)
. ......+.+..+++.+||+++||+++ .+|+++
T Consensus 85 ~~~~~~~~~~v~~~~~la~~~gI~gtPt~vi--~nG~~i 121 (147)
T 3gv1_A 85 PVGGSICDNPVAETTSLGEQFGFNGTPTLVF--PNGRTQ 121 (147)
T ss_dssp CTTCCCCSCSHHHHHHHHHHTTCCSSCEEEC--TTSCEE
T ss_pred CCccHHHHHHHHHHHHHHHHhCCCccCEEEE--ECCEEe
Confidence 0 01112345678899999999999998 477753
|
| >1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00028 Score=61.96 Aligned_cols=52 Identities=10% Similarity=0.104 Sum_probs=41.3
Q ss_pred eEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC
Q 011791 97 KISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 149 (477)
Q Consensus 97 ~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D 149 (477)
.+.+....++++++.|+..+||+|..+.+.+.++.++|.+.| ++.+++..+.
T Consensus 19 ~~~~G~~~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~-~v~~~~~~~~ 70 (175)
T 1z6m_A 19 GLHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSG-KVERIIKLFD 70 (175)
T ss_dssp SEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTT-SEEEEEEECC
T ss_pred CcccCCCCCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCC-cEEEEEEeCC
Confidence 355556678999999999999999999999999988884332 3788876654
|
| >2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00011 Score=62.73 Aligned_cols=60 Identities=18% Similarity=0.282 Sum_probs=41.0
Q ss_pred EEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCCh--hHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 271 YFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ--TSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 271 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~--~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
.|+++||++|++..+.|.++. +.+..+++|.+. .++ ...+.+.+++.++|+
T Consensus 53 vf~~~~Cp~C~~~k~~L~~~~---------i~~~~vdId~~~~~~~~------------------~~~L~~~~g~~tvP~ 105 (146)
T 2ht9_A 53 IFSKTSCSYCTMAKKLFHDMN---------VNYKVVELDLLEYGNQF------------------QDALYKMTGERTVPR 105 (146)
T ss_dssp EEECTTCHHHHHHHHHHHHHT---------CCCEEEEGGGCTTHHHH------------------HHHHHHHHSCCCSCE
T ss_pred EEECCCChhHHHHHHHHHHcC---------CCeEEEECccCcCCHHH------------------HHHHHHHhCCCCcCe
Confidence 399999999999999887652 233445555431 111 135778899999999
Q ss_pred EEEECCCCcEEE
Q 011791 349 LVAIGPSGRTIT 360 (477)
Q Consensus 349 ~~lid~~G~iv~ 360 (477)
++ + +|+.+.
T Consensus 106 if-i--~G~~ig 114 (146)
T 2ht9_A 106 IF-V--NGTFIG 114 (146)
T ss_dssp EE-E--TTEEEE
T ss_pred EE-E--CCEEEe
Confidence 85 4 677764
|
| >1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00019 Score=54.26 Aligned_cols=61 Identities=13% Similarity=0.304 Sum_probs=42.2
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
++.|+++||++|+...+.|.+. ++.+..++++.+.+. ...+.+.+++.++|+
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~---------~i~~~~~~i~~~~~~-------------------~~~~~~~~~~~~vP~ 54 (82)
T 1fov_A 3 VEIYTKETCPYCHRAKALLSSK---------GVSFQELPIDGNAAK-------------------REEMIKRSGRTTVPQ 54 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHHH---------TCCCEEEECTTCSHH-------------------HHHHHHHHSSCCSCE
T ss_pred EEEEECCCChhHHHHHHHHHHC---------CCCcEEEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 4568999999999999888753 244555666644221 234666789999999
Q ss_pred EEEECCCCcEEE
Q 011791 349 LVAIGPSGRTIT 360 (477)
Q Consensus 349 ~~lid~~G~iv~ 360 (477)
++ + +|+.+.
T Consensus 55 l~-~--~g~~i~ 63 (82)
T 1fov_A 55 IF-I--DAQHIG 63 (82)
T ss_dssp EE-E--TTEEEE
T ss_pred EE-E--CCEEEe
Confidence 85 4 677654
|
| >2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00012 Score=56.59 Aligned_cols=58 Identities=12% Similarity=0.300 Sum_probs=41.3
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhc-CCCCcc
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF-KVSGIP 347 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~-~v~~~P 347 (477)
++.|+++||++|+...+.|.++ ++.+..++++ .+. ...+.+.+ ++.++|
T Consensus 8 v~~y~~~~C~~C~~~~~~L~~~---------~i~~~~vdv~--~~~-------------------~~~l~~~~~~~~~vP 57 (89)
T 2klx_A 8 IILYTRPNCPYCKRARDLLDKK---------GVKYTDIDAS--TSL-------------------RQEMVQRANGRNTFP 57 (89)
T ss_dssp EEEESCSCCTTTHHHHHHHHHH---------TCCEEEECSC--HHH-------------------HHHHHHHHHSSCCSC
T ss_pred EEEEECCCChhHHHHHHHHHHc---------CCCcEEEECC--HHH-------------------HHHHHHHhCCCCCcC
Confidence 5678999999999999888764 2445566666 211 23567778 999999
Q ss_pred eEEEECCCCcEE
Q 011791 348 MLVAIGPSGRTI 359 (477)
Q Consensus 348 t~~lid~~G~iv 359 (477)
+++ + +|+.+
T Consensus 58 ~l~-~--~g~~i 66 (89)
T 2klx_A 58 QIF-I--GDYHV 66 (89)
T ss_dssp EEE-E--TTEEC
T ss_pred EEE-E--CCEEE
Confidence 985 4 57764
|
| >1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.52 E-value=4.5e-05 Score=60.71 Aligned_cols=62 Identities=11% Similarity=0.156 Sum_probs=43.2
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
.+++++.|+++||++|+...+.|.++. .+ +.+..|.+|++. ...+.+.|| .
T Consensus 15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~-----~~--i~~~~vdi~~~~---------------------~~el~~~~g-~ 65 (100)
T 1wjk_A 15 ALPVLTLFTKAPCPLCDEAKEVLQPYK-----DR--FILQEVDITLPE---------------------NSTWYERYK-F 65 (100)
T ss_dssp CCCEEEEEECSSCHHHHHHHHHTSTTS-----SS--SEEEEEETTSST---------------------THHHHHHSS-S
T ss_pred CCCEEEEEeCCCCcchHHHHHHHHHhh-----hC--CeEEEEECCCcc---------------------hHHHHHHHC-C
Confidence 456788899999999998888766542 22 666667776211 134778899 9
Q ss_pred cCCeEEEECCCCCc
Q 011791 185 TLPTLVIIGPDGKT 198 (477)
Q Consensus 185 ~~P~~~lid~~G~i 198 (477)
.+|+++ + +|+.
T Consensus 66 ~vP~l~-~--~g~~ 76 (100)
T 1wjk_A 66 DIPVFH-L--NGQF 76 (100)
T ss_dssp SCSEEE-E--SSSE
T ss_pred CCCEEE-E--CCEE
Confidence 999864 4 4654
|
| >4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00036 Score=61.53 Aligned_cols=42 Identities=17% Similarity=0.397 Sum_probs=33.9
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS 308 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~ 308 (477)
.++++||.|+...||+|+++.+.+.++.+++.++ +.++.+.+
T Consensus 20 ~~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~---~~~~~~~~ 61 (184)
T 4dvc_A 20 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEG---AKFQKNHV 61 (184)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTT---CEEEEEEC
T ss_pred CCCCEEEEEECCCCHhHHHHhHHHHHHHhhcCCc---eEEEEEec
Confidence 3688999999999999999999999988887654 55555543
|
| >3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=97.49 E-value=1.7e-05 Score=75.68 Aligned_cols=63 Identities=10% Similarity=0.203 Sum_probs=42.8
Q ss_pred CEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCc-hhHHHHHHHcCcc
Q 011791 106 KTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKD-KSREKLARYFELS 184 (477)
Q Consensus 106 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~v~ 184 (477)
+..+++|||+||+||+...|.+.++.++++ .|.+|.. +. +...++++.|+++
T Consensus 198 ~~~vV~F~A~WC~~Ck~l~p~le~lA~~l~---------~Vd~d~~------------------d~~~~~~~la~~~gI~ 250 (291)
T 3kp9_A 198 QIGGTMYGAYWCPHCQDQKELFGAAFDQVP---------YVECSPN------------------GPGTPQAQECTEAGIT 250 (291)
T ss_dssp HTTCEEEECTTCHHHHHHHHHHGGGGGGSC---------EEESCSS------------------CSSSCCCHHHHTTTCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHcC---------EEEEeec------------------CchhhHHHHHHHcCCc
Confidence 334689999999999999998887764431 2333311 00 1124578999999
Q ss_pred cCCeEEEECCCCCc
Q 011791 185 TLPTLVIIGPDGKT 198 (477)
Q Consensus 185 ~~P~~~lid~~G~i 198 (477)
++||+++ +|+.
T Consensus 251 ~vPT~~i---~G~~ 261 (291)
T 3kp9_A 251 SYPTWII---NGRT 261 (291)
T ss_dssp STTEEEE---TTEE
T ss_pred ccCeEEE---CCEE
Confidence 9999665 5653
|
| >3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00046 Score=61.82 Aligned_cols=43 Identities=19% Similarity=0.088 Sum_probs=36.9
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 149 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D 149 (477)
.++++++.|++.|||+|+.+.|.|.++.+++.++ +.+..+.++
T Consensus 23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~---v~~~~~p~~ 65 (193)
T 3hz8_A 23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDD---MYLRTEHVV 65 (193)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCTT---EEEEEEECC
T ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCCC---eEEEEecCC
Confidence 4799999999999999999999999998887663 777777765
|
| >1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00038 Score=52.52 Aligned_cols=53 Identities=17% Similarity=0.288 Sum_probs=36.8
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
++.|+++||++|+...+.|.+ .+ +.+..+.+|.+.+.. . ..+.+|+.++|+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~-------~~--i~~~~vdi~~~~~~~-------------------~-~~~~~g~~~vP~ 53 (81)
T 1h75_A 3 ITIYTRNDCVQCHATKRAMEN-------RG--FDFEMINVDRVPEAA-------------------E-ALRAQGFRQLPV 53 (81)
T ss_dssp EEEEECTTCHHHHHHHHHHHH-------TT--CCCEEEETTTCHHHH-------------------H-HHHHTTCCSSCE
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CC--CCeEEEECCCCHHHH-------------------H-HHHHhCCCccCE
Confidence 467999999999988877654 24 556677777654311 1 223578999999
Q ss_pred EE
Q 011791 189 LV 190 (477)
Q Consensus 189 ~~ 190 (477)
++
T Consensus 54 ~~ 55 (81)
T 1h75_A 54 VI 55 (81)
T ss_dssp EE
T ss_pred EE
Confidence 84
|
| >3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00061 Score=52.80 Aligned_cols=64 Identities=16% Similarity=0.272 Sum_probs=40.1
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChh-HHHHHHhcCCCceeccCcchhHHHHHhcCCCCcc
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT-SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIP 347 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~-~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P 347 (477)
++.|+++||++|++..+.|.++. +.+-.+.++.... +-.+. ..++.+.+++.++|
T Consensus 14 v~ly~~~~Cp~C~~~~~~L~~~g---------i~~~~~~v~~~~~~~~~~~---------------~~~l~~~~g~~~vP 69 (92)
T 3ic4_A 14 VLMYGLSTCPHCKRTLEFLKREG---------VDFEVIWIDKLEGEERKKV---------------IEKVHSISGSYSVP 69 (92)
T ss_dssp SEEEECTTCHHHHHHHHHHHHHT---------CCCEEEEGGGCCHHHHHHH---------------HHHHHHHHSSSCSC
T ss_pred EEEEECCCChHHHHHHHHHHHcC---------CCcEEEEeeeCCccchHHH---------------HHHHHHhcCCCCcC
Confidence 45688999999999988887641 2233344442111 00000 13567788999999
Q ss_pred eEEEECCCCcEE
Q 011791 348 MLVAIGPSGRTI 359 (477)
Q Consensus 348 t~~lid~~G~iv 359 (477)
++++ +|+.+
T Consensus 70 ~l~~---~g~~i 78 (92)
T 3ic4_A 70 VVVK---GDKHV 78 (92)
T ss_dssp EEEE---TTEEE
T ss_pred EEEE---CCEEE
Confidence 9887 56654
|
| >3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00046 Score=52.92 Aligned_cols=64 Identities=14% Similarity=0.215 Sum_probs=40.0
Q ss_pred EEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC----
Q 011791 268 ILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV---- 343 (477)
Q Consensus 268 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v---- 343 (477)
.++.|+++||++|++....|.++ +-.++++.|+.+.+.... .++.+.+|.
T Consensus 5 ~v~ly~~~~Cp~C~~~~~~L~~~-------~i~~~~~~vd~~~~~~~~-------------------~el~~~~g~~~~~ 58 (89)
T 3msz_A 5 KVKIYTRNGCPYCVWAKQWFEEN-------NIAFDETIIDDYAQRSKF-------------------YDEMNQSGKVIFP 58 (89)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHT-------TCCCEEEECCSHHHHHHH-------------------HHHHHTTTCCSSC
T ss_pred EEEEEEcCCChhHHHHHHHHHHc-------CCCceEEEeecCCChhHH-------------------HHHHHHhCCCCCC
Confidence 36778999999999988877553 113455544443222111 234555555
Q ss_pred -CCcceEEEECCCCcEEE
Q 011791 344 -SGIPMLVAIGPSGRTIT 360 (477)
Q Consensus 344 -~~~Pt~~lid~~G~iv~ 360 (477)
.++|++++ +|+.+.
T Consensus 59 ~~~vP~i~i---~g~~i~ 73 (89)
T 3msz_A 59 ISTVPQIFI---DDEHIG 73 (89)
T ss_dssp CCSSCEEEE---TTEEEE
T ss_pred CCccCEEEE---CCEEEe
Confidence 99999865 677664
|
| >2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00039 Score=53.96 Aligned_cols=61 Identities=15% Similarity=0.249 Sum_probs=42.2
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
++.|+++||++|++..+.|.+. ++.+..++++.+... ...+.+.+++.++|+
T Consensus 8 v~ly~~~~C~~C~~~~~~L~~~---------~i~~~~~di~~~~~~-------------------~~~l~~~~~~~~vP~ 59 (92)
T 2khp_A 8 VIIYTRPGCPYCARAKALLARK---------GAEFNEIDASATPEL-------------------RAEMQERSGRNTFPQ 59 (92)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT---------TCCCEEEESTTSHHH-------------------HHHHHHHHTSSCCCE
T ss_pred EEEEECCCChhHHHHHHHHHHc---------CCCcEEEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 5678999999999998887653 245566677754321 234666789999996
Q ss_pred EEEECCCCcEEE
Q 011791 349 LVAIGPSGRTIT 360 (477)
Q Consensus 349 ~~lid~~G~iv~ 360 (477)
+ ++ +|+.+.
T Consensus 60 l-~~--~g~~i~ 68 (92)
T 2khp_A 60 I-FI--GSVHVG 68 (92)
T ss_dssp E-EE--TTEEEE
T ss_pred E-EE--CCEEEc
Confidence 5 44 576654
|
| >3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00052 Score=54.36 Aligned_cols=63 Identities=17% Similarity=0.289 Sum_probs=43.0
Q ss_pred EEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhc-CCCC
Q 011791 267 TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF-KVSG 345 (477)
Q Consensus 267 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~-~v~~ 345 (477)
.-++.|+++||++|++..+.|.++ ++.+..++++.+.+. ...+.+.. +..+
T Consensus 16 ~~v~vy~~~~Cp~C~~ak~~L~~~---------~i~y~~idI~~~~~~-------------------~~~l~~~~~g~~~ 67 (99)
T 3qmx_A 16 AKIEIYTWSTCPFCMRALALLKRK---------GVEFQEYCIDGDNEA-------------------REAMAARANGKRS 67 (99)
T ss_dssp CCEEEEECTTCHHHHHHHHHHHHH---------TCCCEEEECTTCHHH-------------------HHHHHHHTTTCCC
T ss_pred CCEEEEEcCCChhHHHHHHHHHHC---------CCCCEEEEcCCCHHH-------------------HHHHHHHhCCCCC
Confidence 345669999999999999888764 244556677765421 12345555 8899
Q ss_pred cceEEEECCCCcEEE
Q 011791 346 IPMLVAIGPSGRTIT 360 (477)
Q Consensus 346 ~Pt~~lid~~G~iv~ 360 (477)
+|++ ++ +|+.+.
T Consensus 68 vP~i-fi--~g~~ig 79 (99)
T 3qmx_A 68 LPQI-FI--DDQHIG 79 (99)
T ss_dssp SCEE-EE--TTEEEE
T ss_pred CCEE-EE--CCEEEe
Confidence 9987 45 577664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 477 | ||||
| d1v5na_ | 89 | g.49.1.3 (A:) Pdi-like hypothetical protein At1g60 | 3e-29 | |
| d1i5ga_ | 144 | c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul | 5e-27 | |
| d1i5ga_ | 144 | c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul | 3e-20 | |
| d1i5ga_ | 144 | c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul | 3e-09 | |
| d1o73a_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei | 3e-18 | |
| d1o73a_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei | 9e-13 | |
| d1o73a_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei | 1e-05 | |
| d1o8xa_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Crithidia fascicula | 3e-11 | |
| d1o8xa_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Crithidia fascicula | 8e-07 | |
| d1o8xa_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Crithidia fascicula | 2e-05 | |
| d2fy6a1 | 143 | c.47.1.10 (A:33-175) Peptide methionine sulfoxide | 3e-11 | |
| d2fy6a1 | 143 | c.47.1.10 (A:33-175) Peptide methionine sulfoxide | 5e-07 | |
| d2b5xa1 | 143 | c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase | 8e-11 | |
| d1sena_ | 135 | c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 | 3e-07 | |
| d1lu4a_ | 134 | c.47.1.10 (A:) Soluble secreted antigen MPT53 {Myc | 2e-06 | |
| d1lu4a_ | 134 | c.47.1.10 (A:) Soluble secreted antigen MPT53 {Myc | 9e-04 | |
| d1z6na1 | 166 | c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Ps | 6e-06 | |
| d1zzoa1 | 134 | c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacteri | 3e-05 | |
| d2hfda1 | 132 | c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H | 5e-05 | |
| d2zcta1 | 237 | c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum perni | 3e-04 | |
| d1jfua_ | 176 | c.47.1.10 (A:) Membrane-anchored thioredoxin-like | 7e-04 | |
| d1jfua_ | 176 | c.47.1.10 (A:) Membrane-anchored thioredoxin-like | 0.001 | |
| d1we9a_ | 64 | g.50.1.2 (A:) PHD finger protein At5g26210 {Thale | 0.002 | |
| d1zmaa1 | 115 | c.47.1.1 (A:1-115) Bacterocin transport accessory | 0.002 | |
| d1z5ye1 | 136 | c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG | 0.003 |
| >d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 89 | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: C1-like domain domain: Pdi-like hypothetical protein At1g60420 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 108 bits (270), Expect = 3e-29
Identities = 47/81 (58%), Positives = 59/81 (72%), Gaps = 1/81 (1%)
Query: 371 GAEAYPFTEERMKEIDGQYNEMAKGWPENVKHALH-EHELVLDRCGVYSCDGCDEEGRVW 429
G+ TEER+KEI+ +Y+E+AK WP+ VKH LH EHEL L R VY+CD C+EEG +W
Sbjct: 1 GSSGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIW 60
Query: 430 AFSCDECDFCLHPNCALGEDK 450
++ CDECDF LH CAL ED
Sbjct: 61 SYHCDECDFDLHAKCALNEDT 81
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Score = 103 bits (258), Expect = 5e-27
Identities = 55/133 (41%), Positives = 72/133 (54%), Gaps = 4/133 (3%)
Query: 250 VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 309
V+ + + LAGKT+ YFSA WCPP RAF P+LID YK E+ EV+ IS D
Sbjct: 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNF-EVMLISWD 71
Query: 310 RDQTSFDEFFKGMPWLALPFGDA-RKASLSRKFKVSGIPMLVAIGP-SGRTITKEARDMI 367
F +++ MPWLALPF D L+ F V IP LV + SG IT +AR M+
Sbjct: 72 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMV 131
Query: 368 AV-HGAEAYPFTE 379
A+ +P+
Sbjct: 132 VKDPEAKDFPWPN 144
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Score = 84.9 bits (209), Expect = 3e-20
Identities = 47/131 (35%), Positives = 72/131 (54%), Gaps = 4/131 (3%)
Query: 90 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 149
V+ I++ L GKT+ YFS S S FTP+L++ Y+ K ++FE++LIS D
Sbjct: 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK-KNFEVMLISWD 71
Query: 150 DEEESFKRDLGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIGPD-GKTLHSN-VAEA 206
+ E FK MPWLALPF+D K E L F++ ++PTLV + D G + +
Sbjct: 72 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMV 131
Query: 207 IEEHGVGAFPF 217
+++ FP+
Sbjct: 132 VKDPEAKDFPW 142
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Score = 53.3 bits (127), Expect = 3e-09
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLS-DGGVEIIREYGVEGYPF 57
MPWLA+PF D + + L F V IP LV ++ ++G +++ ++++ + +P+
Sbjct: 84 MPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPW 142
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Score = 79.2 bits (194), Expect = 3e-18
Identities = 49/129 (37%), Positives = 69/129 (53%), Gaps = 4/129 (3%)
Query: 253 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 312
G+V + L GKT+ LYFSA WCPPCR F P L + Y+K EVV IS D ++
Sbjct: 16 SKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKN-FEVVLISWDENE 74
Query: 313 TSFDEFFKGMPWLALPFG-DARKASLSRKFKVSGIPMLVAIGP-SGRTITKEARDMIAV- 369
+ F +++ MPWLALPF + + L + F V IP L+ I +G I +AR +
Sbjct: 75 SDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIED 134
Query: 370 HGAEAYPFT 378
+P+
Sbjct: 135 PDGANFPWP 143
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Score = 63.4 bits (153), Expect = 9e-13
Identities = 50/129 (38%), Positives = 70/129 (54%), Gaps = 4/129 (3%)
Query: 93 SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE 152
S ++S+ L GKT+ LYFS S FTP L E YEK ++FE+VLIS D+ E
Sbjct: 16 SKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHH-VAKNFEVVLISWDENE 74
Query: 153 ESFKRDLGSMPWLALPF-KDKSREKLARYFELSTLPTLVIIGPD-GKTLHSNVAEAIEEH 210
F G MPWLALPF + + +L + F + ++PTL+ I D G + + + E
Sbjct: 75 SDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIED 134
Query: 211 GVGA-FPFT 218
GA FP+
Sbjct: 135 PDGANFPWP 143
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Score = 43.4 bits (101), Expect = 1e-05
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVL-SDGGVEIIREYGVEGYPFT 58
MPWLA+PF T +L + F V IP L+ ++ + G ++ + +I + +P+
Sbjct: 84 MPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIEDPDGANFPWP 143
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Score = 59.3 bits (142), Expect = 3e-11
Identities = 51/130 (39%), Positives = 70/130 (53%), Gaps = 4/130 (3%)
Query: 253 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 312
+ G+V V LAGK + YFSA WCPP R F P+LI+ Y K E EVVF + D ++
Sbjct: 14 RGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNF-EVVFCTWDEEE 72
Query: 313 TSFDEFFKGMPWLALPFGDA-RKASLSRKFKVSGIPMLVAIGP-SGRTITKEARDMIAV- 369
F +F MPWLA+PF + LS+ F V IP L+ + SG +T AR +
Sbjct: 73 DGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLVKD 132
Query: 370 HGAEAYPFTE 379
E +P+ +
Sbjct: 133 PEGEQFPWKD 142
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Score = 46.2 bits (108), Expect = 8e-07
Identities = 40/133 (30%), Positives = 72/133 (54%), Gaps = 4/133 (3%)
Query: 90 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 149
+ ++ V L GK + YFS S + FTP+L+E Y+K + ++FE+V + D
Sbjct: 11 KLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDK-FHESKNFEVVFCTWD 69
Query: 150 DEEESFKRDLGSMPWLALPFKDK-SREKLARYFELSTLPTLVIIGPD-GKTLHSN-VAEA 206
+EE+ F MPWLA+PF + +KL+++F + ++PTL+ + D G + + A
Sbjct: 70 EEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 129
Query: 207 IEEHGVGAFPFTP 219
+++ FP+
Sbjct: 130 VKDPEGEQFPWKD 142
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Score = 42.7 bits (99), Expect = 2e-05
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 1 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLS-DGGVEIIREYGVEGYPFT 58
MPWLAVPF+ SE KL + F V IP L+ +D ++G V++ ++++ E +P+
Sbjct: 82 MPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLVKDPEGEQFPWK 141
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Score = 58.8 bits (141), Expect = 3e-11
Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 3/107 (2%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 313
+ V K L+ F A WCP C + L + + K + +L V +
Sbjct: 12 DNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEK 71
Query: 314 ---SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGR 357
F +++ G+ + LP ++++ +S P IG G
Sbjct: 72 KDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGD 118
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Score = 46.8 bits (110), Expect = 5e-07
Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 3/122 (2%)
Query: 92 SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE 151
++D R SV + K + F S + + + K + V
Sbjct: 10 TADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLH 69
Query: 152 ---EESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIE 208
+ F++ + + LP + +A+ +S P+ +IG DG E
Sbjct: 70 EKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSINE 129
Query: 209 EH 210
Sbjct: 130 AQ 131
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Score = 57.6 bits (138), Expect = 8e-11
Identities = 20/133 (15%), Positives = 45/133 (33%), Gaps = 8/133 (6%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEV-VFISSDRDQ 312
NG + K L++F + C C+ +P++ + K +++ + V + S D
Sbjct: 18 NGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLD 77
Query: 313 TSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGA 372
+ + P +L+ F+ +P +G+ G
Sbjct: 78 PGKIKETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHF-------QAGG 130
Query: 373 EAYPFTEERMKEI 385
E+R+ +
Sbjct: 131 SGMKMLEKRVNRV 143
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.2 bits (111), Expect = 3e-07
Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 1/111 (0%)
Query: 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW 324
G +++ WC C+A PK ++ +I E + + +V + + + D G
Sbjct: 25 GLPLMVIIHKSWCGACKALKPKFAES-TEISELSHNFVMVNLEDEEEPKDEDFSPDGGYI 83
Query: 325 LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAY 375
+ F D +G P S + + ++ +A+
Sbjct: 84 PRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLTGDAF 134
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 45.3 bits (106), Expect = 2e-06
Identities = 23/116 (19%), Positives = 33/116 (28%), Gaps = 8/116 (6%)
Query: 245 GD--LDF-VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESL 301
D L F +G + L GK +L+F WCP C A P L
Sbjct: 1 ADERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVG 60
Query: 302 EVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGR 357
Q+ ++ L G + ++ V P V G
Sbjct: 61 IATRADVGAMQSFVSKYNLNFTNLNDADGV-----IWARYNVPWQPAFVFYRADGT 111
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 37.3 bits (85), Expect = 9e-04
Identities = 13/111 (11%), Positives = 29/111 (26%), Gaps = 6/111 (5%)
Query: 88 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLI 146
F + G + L+GK + + F ++ + V I
Sbjct: 6 QFTATTLSGAPFDGASLQGK----PAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGI 61
Query: 147 SLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGK 197
+ + + + + D + + + P V DG
Sbjct: 62 ATRADVGAMQSFVSKYNLNFTNLNDADGV-IWARYNVPWQPAFVFYRADGT 111
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 44.2 bits (103), Expect = 6e-06
Identities = 15/126 (11%), Positives = 35/126 (27%), Gaps = 16/126 (12%)
Query: 260 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 319
+ + + LL WCP C+ L L A + ++E+ IS R + +
Sbjct: 49 LQRIERRYRLLVAGEMWCPDCQINLAALDFAQRL----QPNIELAIISKGRAEDDLRQRL 104
Query: 320 KGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTE 379
+ + + + + A + + E
Sbjct: 105 ALERIAIPLVLV---------LDEEFNLLGRFVERPQAVLDGGPQALAAYKAGD---YLE 152
Query: 380 ERMKEI 385
+ ++
Sbjct: 153 HAIGDV 158
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 41.6 bits (96), Expect = 3e-05
Identities = 23/116 (19%), Positives = 34/116 (29%), Gaps = 5/116 (4%)
Query: 243 VSGDLDF-VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESL 301
V L F +G L GK +L+F A WCP C+ P + E
Sbjct: 2 VPAQLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVG 61
Query: 302 EVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGR 357
Q +++ S+ F V+ P + P G
Sbjct: 62 VAGLDQVPAMQEFVNKYPVKTFTQLADT----DGSVWANFGVTQQPAYAFVDPHGN 113
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Score = 40.8 bits (95), Expect = 5e-05
Identities = 10/86 (11%), Positives = 22/86 (25%), Gaps = 12/86 (13%)
Query: 226 AEIQRAKEESQTLESVLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLP 285
A QR T + LD + + V +LL P
Sbjct: 9 ALWQRMLARGWT---PVSESRLDDWLTQAPDGV---------VLLSSDPKRTPEVSDNPV 56
Query: 286 KLIDAYKKIKERNESLEVVFISSDRD 311
+ + ++ + + + +
Sbjct: 57 MIGELLREFPDYTWQVAIADLEQSEA 82
|
| >d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin species: Aeropyrum pernix [TaxId: 56636]
Score = 39.8 bits (92), Expect = 3e-04
Identities = 21/165 (12%), Positives = 50/165 (30%), Gaps = 13/165 (7%)
Query: 248 DFVVGKNGGKVPVSD---LAGKTILLYF-SAHWCPPCRAFLPKLIDAYKKIKERNESLEV 303
+ V + G + + D GK +L+ A + P C Y+ + L
Sbjct: 9 EMEVTTDHGVIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIG 68
Query: 304 VFISSDRDQTSFDEFF--KGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 361
+ + S + E+ + P + +++R+ + +
Sbjct: 69 LSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDA 128
Query: 362 EAR-DMIAVHGAEAYPFTEERMKEIDG-QYNEMAK-----GWPEN 399
+ + E +E ++ + + + K WP N
Sbjct: 129 RGVIRTMLYYPMELGRLVDEILRIVKALKLGDSLKRAVPADWPNN 173
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Score = 38.1 bits (87), Expect = 7e-04
Identities = 32/136 (23%), Positives = 49/136 (36%), Gaps = 11/136 (8%)
Query: 254 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ- 312
+G +SD GKT+L+ A WC PCR +P L + K+ N + + I + +
Sbjct: 45 DGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEK 104
Query: 313 --TSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVH 370
T E L + G+P V + P G IA
Sbjct: 105 PKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGC--------EIATI 156
Query: 371 GAEAYPFTEERMKEID 386
A +E+ +K I
Sbjct: 157 AGPAEWASEDALKLIR 172
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Score = 37.3 bits (85), Expect = 0.001
Identities = 22/142 (15%), Positives = 40/142 (28%), Gaps = 13/142 (9%)
Query: 88 DF-VISSDGRKISVSDLEGKTIGLYFSMS---SYKASAEFTPRLVEVYEKLKGKGESFEI 143
D +DG+ +SD GKT+ + + + L + + I
Sbjct: 38 DLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINI 97
Query: 144 VLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203
+ + K + K K + L +PT V++ P G
Sbjct: 98 DTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGC------ 151
Query: 204 AEAIEEHGVGAFPFTPEKFAEL 225
G + E +L
Sbjct: 152 ---EIATIAGPAEWASEDALKL 170
|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 | Back information, alignment and structure |
|---|
class: Small proteins fold: FYVE/PHD zinc finger superfamily: FYVE/PHD zinc finger family: PHD domain domain: PHD finger protein At5g26210 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 34.6 bits (79), Expect = 0.002
Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 12/59 (20%)
Query: 412 DRCGVYSCDGCDEEGRVWAFSCDECDFCLHPNCALGEDKGTKDDKSEEQNPSKEGWRCD 470
+CG C W CD C+ H C + + + ++C
Sbjct: 7 GQCGA--CGESYAADEFWIC-CDLCEMWFHGKCV---------KITPARAEHIKQYKCP 53
|
| >d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Bacterocin transport accessory protein Bta species: Streptococcus pneumoniae [TaxId: 1313]
Score = 36.1 bits (82), Expect = 0.002
Identities = 11/63 (17%), Positives = 17/63 (26%)
Query: 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW 324
+T + CP CR F L + K + S D +F +
Sbjct: 26 KETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTV 85
Query: 325 LAL 327
Sbjct: 86 PGF 88
|
| >d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Escherichia coli [TaxId: 562]
Score = 35.8 bits (81), Expect = 0.003
Identities = 19/97 (19%), Positives = 28/97 (28%), Gaps = 6/97 (6%)
Query: 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW 324
GK +LL A WCP RA L + ++ D+ + K +
Sbjct: 20 GKPVLLNVWATWCPTSRAEHQYLNQLSAQGIRVV------GMNYKDDRQKAISWLKELGN 73
Query: 325 LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 361
L V G P I +G +
Sbjct: 74 PYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYR 110
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 477 | |||
| d1o73a_ | 144 | Tryparedoxin I {Trypanosoma brucei brucei [TaxId: | 99.93 | |
| d1i5ga_ | 144 | Tryparedoxin II {Crithidia fasciculata [TaxId: 565 | 99.92 | |
| d1i5ga_ | 144 | Tryparedoxin II {Crithidia fasciculata [TaxId: 565 | 99.9 | |
| d1o73a_ | 144 | Tryparedoxin I {Trypanosoma brucei brucei [TaxId: | 99.89 | |
| d1o8xa_ | 144 | Tryparedoxin I {Crithidia fasciculata [TaxId: 5656 | 99.89 | |
| d2cvba1 | 187 | Probable thiol-disulfide isomerase/thioredoxin TTH | 99.89 | |
| d1zzoa1 | 134 | Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI | 99.89 | |
| d1lu4a_ | 134 | Soluble secreted antigen MPT53 {Mycobacterium tube | 99.89 | |
| d1st9a_ | 137 | Thiol-disulfide oxidoreductase ResA {Bacillus subt | 99.88 | |
| d1o8xa_ | 144 | Tryparedoxin I {Crithidia fasciculata [TaxId: 5656 | 99.87 | |
| d2fy6a1 | 143 | Peptide methionine sulfoxide reductase MsrA/MsrB, | 99.85 | |
| d1knga_ | 144 | Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr | 99.85 | |
| d1z5ye1 | 136 | Thioredoxin-like protein CcmG (CycY, DsbE) {Escher | 99.84 | |
| d2b5xa1 | 143 | thiol:disulfide oxidoreductase YkuV {Bacillus subt | 99.84 | |
| d2cvba1 | 187 | Probable thiol-disulfide isomerase/thioredoxin TTH | 99.83 | |
| d1st9a_ | 137 | Thiol-disulfide oxidoreductase ResA {Bacillus subt | 99.83 | |
| d1jfua_ | 176 | Membrane-anchored thioredoxin-like protein TlpA, s | 99.82 | |
| d1lu4a_ | 134 | Soluble secreted antigen MPT53 {Mycobacterium tube | 99.82 | |
| d1zzoa1 | 134 | Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI | 99.81 | |
| d2fy6a1 | 143 | Peptide methionine sulfoxide reductase MsrA/MsrB, | 99.79 | |
| d1z5ye1 | 136 | Thioredoxin-like protein CcmG (CycY, DsbE) {Escher | 99.76 | |
| d1jfua_ | 176 | Membrane-anchored thioredoxin-like protein TlpA, s | 99.76 | |
| d2cx4a1 | 160 | Bacterioferritin comigratory protein {Archaeon Aer | 99.76 | |
| d2b5xa1 | 143 | thiol:disulfide oxidoreductase YkuV {Bacillus subt | 99.75 | |
| d1knga_ | 144 | Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr | 99.75 | |
| d2bmxa1 | 169 | Alkyl hydroperoxide reductase AhpC {Mycobacterium | 99.74 | |
| d1we0a1 | 166 | Alkyl hydroperoxide reductase AhpC {Amphibacillus | 99.74 | |
| d1e2ya_ | 167 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 99.73 | |
| d1uula_ | 194 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 99.71 | |
| d1we0a1 | 166 | Alkyl hydroperoxide reductase AhpC {Amphibacillus | 99.7 | |
| d1e2ya_ | 167 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 99.69 | |
| d1zyea1 | 158 | Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [ | 99.69 | |
| d1zofa1 | 170 | Thioredoxin reductase TsaA {Helicobacter pylori [T | 99.69 | |
| d1xvwa1 | 153 | Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri | 99.68 | |
| d2a4va1 | 156 | Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c | 99.67 | |
| d2bmxa1 | 169 | Alkyl hydroperoxide reductase AhpC {Mycobacterium | 99.67 | |
| d2cx4a1 | 160 | Bacterioferritin comigratory protein {Archaeon Aer | 99.66 | |
| d1n8ja_ | 186 | Alkyl hydroperoxide reductase AhpC {Salmonella typ | 99.65 | |
| d2zcta1 | 237 | Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | 99.64 | |
| d1xwaa_ | 111 | Thioredoxin {Fruit fly (Drosophila melanogaster) [ | 99.63 | |
| d1xvwa1 | 153 | Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri | 99.62 | |
| d1xzoa1 | 172 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.62 | |
| d1uula_ | 194 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 99.61 | |
| d1nw2a_ | 105 | Thioredoxin {Alicyclobacillus acidocaldarius, form | 99.6 | |
| d1qxha_ | 164 | Thiol peroxidase Tpx {Escherichia coli [TaxId: 562 | 99.6 | |
| d1dbya_ | 107 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.6 | |
| d1xzoa1 | 172 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.59 | |
| d1qmva_ | 197 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 99.59 | |
| d1zyea1 | 158 | Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [ | 99.59 | |
| d1qxha_ | 164 | Thiol peroxidase Tpx {Escherichia coli [TaxId: 562 | 99.59 | |
| d2trxa_ | 108 | Thioredoxin {Escherichia coli [TaxId: 562]} | 99.59 | |
| d1zofa1 | 170 | Thioredoxin reductase TsaA {Helicobacter pylori [T | 99.58 | |
| d1fb6a_ | 104 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.57 | |
| d2ifqa1 | 105 | Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | 99.57 | |
| d1ep7a_ | 112 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.57 | |
| d1thxa_ | 108 | Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | 99.56 | |
| d1psqa_ | 163 | Probable thiol peroxidase PsaD {Streptococcus pneu | 99.56 | |
| d2h01a1 | 170 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 99.56 | |
| d1r26a_ | 113 | Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | 99.56 | |
| d1n8ja_ | 186 | Alkyl hydroperoxide reductase AhpC {Salmonella typ | 99.56 | |
| d1gh2a_ | 107 | Thioredoxin-like protein, N-terminal domain {Human | 99.56 | |
| d1xfla_ | 114 | Thioredoxin {Thale cress (Arabidopsis thaliana) [T | 99.56 | |
| d1xvqa_ | 166 | Thiol peroxidase Tpx {Mycobacterium tuberculosis [ | 99.55 | |
| d2f8aa1 | 184 | Glutathione peroxidase {Human (Homo sapiens) [TaxI | 99.54 | |
| d1ti3a_ | 113 | Thioredoxin {European aspen (Populus tremula), thi | 99.54 | |
| d1wp0a1 | 160 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.54 | |
| d1prxa_ | 220 | 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: | 99.53 | |
| d2zcta1 | 237 | Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | 99.53 | |
| d1f9ma_ | 112 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.52 | |
| d1xvqa_ | 166 | Thiol peroxidase Tpx {Mycobacterium tuberculosis [ | 99.5 | |
| d1a8la2 | 107 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 99.49 | |
| d1qmva_ | 197 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 99.49 | |
| d1q98a_ | 164 | Thiol peroxidase Tpx {Haemophilus influenzae [TaxI | 99.49 | |
| d2a4va1 | 156 | Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c | 99.49 | |
| d2fwha1 | 117 | Thiol:disulfide interchange protein DsbD, C-termin | 99.49 | |
| d1syra_ | 103 | Thioredoxin {Malarial parasite (Plasmodium falcipa | 99.49 | |
| d1q98a_ | 164 | Thiol peroxidase Tpx {Haemophilus influenzae [TaxI | 99.46 | |
| d1psqa_ | 163 | Probable thiol peroxidase PsaD {Streptococcus pneu | 99.46 | |
| d1qgva_ | 137 | spliceosomal protein U5-15Kd {Human (Homo sapiens) | 99.45 | |
| d1woua_ | 119 | Putative 42-9-9 protein (thioredoxin containing pr | 99.44 | |
| d1xcca_ | 219 | 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax | 99.43 | |
| d2b5ea4 | 119 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.43 | |
| d2hfda1 | 132 | Hydrogenase-1 operon protein HyaE {Escherichia col | 99.42 | |
| d1v5na_ | 89 | Pdi-like hypothetical protein At1g60420 {Thale cre | 99.42 | |
| d2es7a1 | 119 | Hydrogenase-1 operon protein HyaE {Salmonella typh | 99.41 | |
| d1prxa_ | 220 | 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: | 99.4 | |
| d1zmaa1 | 115 | Bacterocin transport accessory protein Bta {Strept | 99.4 | |
| d1wp0a1 | 160 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.4 | |
| d2h01a1 | 170 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 99.4 | |
| d1fo5a_ | 85 | MJ0307, thioredoxin/glutaredoxin-like protein {Arc | 99.4 | |
| d1xwaa_ | 111 | Thioredoxin {Fruit fly (Drosophila melanogaster) [ | 99.4 | |
| d1meka_ | 120 | Protein disulfide isomerase, PDI {Human (Homo sapi | 99.38 | |
| d1nhoa_ | 85 | MTH807, thioredoxin/glutaredoxin-like protein {Arc | 99.35 | |
| d2f8aa1 | 184 | Glutathione peroxidase {Human (Homo sapiens) [TaxI | 99.34 | |
| d2b5ea1 | 140 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.32 | |
| d1hyua4 | 96 | Alkyl hydroperoxide reductase subunit F (AhpF), N- | 99.29 | |
| d2b7ka1 | 169 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.29 | |
| d1woua_ | 119 | Putative 42-9-9 protein (thioredoxin containing pr | 99.27 | |
| d2fwha1 | 117 | Thiol:disulfide interchange protein DsbD, C-termin | 99.26 | |
| d1dbya_ | 107 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.24 | |
| d1nw2a_ | 105 | Thioredoxin {Alicyclobacillus acidocaldarius, form | 99.24 | |
| d1sena_ | 135 | Thioredoxin-like protein p19, TLP19 {Human (Homo s | 99.23 | |
| d1xfla_ | 114 | Thioredoxin {Thale cress (Arabidopsis thaliana) [T | 99.23 | |
| d1ep7a_ | 112 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.22 | |
| d2trxa_ | 108 | Thioredoxin {Escherichia coli [TaxId: 562]} | 99.22 | |
| d1xcca_ | 219 | 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax | 99.21 | |
| d2c0ga2 | 122 | Windbeutel, N-terminal domain {Fruit fly (Drosophi | 99.21 | |
| d1fb6a_ | 104 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.21 | |
| d1ti3a_ | 113 | Thioredoxin {European aspen (Populus tremula), thi | 99.21 | |
| d1a8ya1 | 124 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 99.21 | |
| d1thxa_ | 108 | Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | 99.2 | |
| d2ifqa1 | 105 | Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | 99.19 | |
| d2djja1 | 116 | Protein disulfide isomerase, PDI {Fungi (Humicola | 99.18 | |
| d1fo5a_ | 85 | MJ0307, thioredoxin/glutaredoxin-like protein {Arc | 99.17 | |
| d1gh2a_ | 107 | Thioredoxin-like protein, N-terminal domain {Human | 99.16 | |
| d1qgva_ | 137 | spliceosomal protein U5-15Kd {Human (Homo sapiens) | 99.15 | |
| d1r26a_ | 113 | Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | 99.14 | |
| d1f9ma_ | 112 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.13 | |
| d2b7ka1 | 169 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.13 | |
| d1z6na1 | 166 | Hypothetical protein PA1234 {Pseudomonas aeruginos | 99.1 | |
| d1syra_ | 103 | Thioredoxin {Malarial parasite (Plasmodium falcipa | 99.1 | |
| d1a8la2 | 107 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 99.07 | |
| d1nhoa_ | 85 | MTH807, thioredoxin/glutaredoxin-like protein {Arc | 99.02 | |
| d2hfda1 | 132 | Hydrogenase-1 operon protein HyaE {Escherichia col | 99.0 | |
| d2dlxa1 | 147 | UBX domain-containing protein 7 {Human (Homo sapie | 99.0 | |
| d2es7a1 | 119 | Hydrogenase-1 operon protein HyaE {Salmonella typh | 99.0 | |
| d2b5ea4 | 119 | Protein disulfide isomerase, PDI {Baker's yeast (S | 98.97 | |
| d1meka_ | 120 | Protein disulfide isomerase, PDI {Human (Homo sapi | 98.95 | |
| d1zmaa1 | 115 | Bacterocin transport accessory protein Bta {Strept | 98.95 | |
| d1hyua4 | 96 | Alkyl hydroperoxide reductase subunit F (AhpF), N- | 98.94 | |
| d1hd2a_ | 161 | Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606 | 98.91 | |
| d1z6na1 | 166 | Hypothetical protein PA1234 {Pseudomonas aeruginos | 98.89 | |
| d1sena_ | 135 | Thioredoxin-like protein p19, TLP19 {Human (Homo s | 98.81 | |
| d2b5ea1 | 140 | Protein disulfide isomerase, PDI {Baker's yeast (S | 98.79 | |
| d2trcp_ | 217 | Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | 98.78 | |
| d1hd2a_ | 161 | Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606 | 98.72 | |
| d1nm3a2 | 163 | N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus | 98.72 | |
| d1wjka_ | 100 | Thioredoxin-like structure containing protein C330 | 98.68 | |
| d1g7ea_ | 122 | Endoplasmic reticulum protein ERP29, N-terminal do | 98.66 | |
| d2djja1 | 116 | Protein disulfide isomerase, PDI {Fungi (Humicola | 98.64 | |
| d2c0ga2 | 122 | Windbeutel, N-terminal domain {Fruit fly (Drosophi | 98.63 | |
| d2dlxa1 | 147 | UBX domain-containing protein 7 {Human (Homo sapie | 98.58 | |
| d1tp9a1 | 162 | Plant peroxiredoxin {Western balsam poplar(Populus | 98.55 | |
| d1a8ya1 | 124 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 98.4 | |
| d1tp9a1 | 162 | Plant peroxiredoxin {Western balsam poplar(Populus | 98.39 | |
| d1nm3a2 | 163 | N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus | 98.18 | |
| d2trcp_ | 217 | Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | 98.03 | |
| d1eeja1 | 156 | Disulfide bond isomerase, DsbC, C-terminal domain | 97.87 | |
| d1wjka_ | 100 | Thioredoxin-like structure containing protein C330 | 97.82 | |
| d1g7ea_ | 122 | Endoplasmic reticulum protein ERP29, N-terminal do | 97.82 | |
| d1v58a1 | 169 | Thiol:disulfide interchange protein DsbG, C-termin | 97.77 | |
| d1t3ba1 | 150 | Disulfide bond isomerase, DsbC, C-terminal domain | 97.46 | |
| d1xiya1 | 179 | 1-Cys peroxiredoxin {Malaria parasite (Plasmodium | 97.45 | |
| d1eeja1 | 156 | Disulfide bond isomerase, DsbC, C-terminal domain | 97.41 | |
| d1z6ma1 | 172 | Hypothetical protein EF0770 {Enterococcus faecalis | 97.35 | |
| d1beda_ | 181 | Disulfide-bond formation facilitator (DsbA) {Vibri | 97.3 | |
| d1v58a1 | 169 | Thiol:disulfide interchange protein DsbG, C-termin | 97.14 | |
| d1r7ha_ | 74 | Glutaredoxin-like NRDH-redoxin {Corynebacterium am | 97.11 | |
| d1fvka_ | 188 | Disulfide-bond formation facilitator (DsbA) {Esche | 97.1 | |
| d1un2a_ | 195 | Disulfide-bond formation facilitator (DsbA) {Esche | 96.97 | |
| d1t3ba1 | 150 | Disulfide bond isomerase, DsbC, C-terminal domain | 96.88 | |
| d1z6ma1 | 172 | Hypothetical protein EF0770 {Enterococcus faecalis | 96.85 | |
| d1xiya1 | 179 | 1-Cys peroxiredoxin {Malaria parasite (Plasmodium | 96.62 | |
| d1h75a_ | 76 | Glutaredoxin-like NRDH-redoxin {Escherichia coli [ | 96.46 | |
| d1egoa_ | 85 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 95.8 | |
| d1nm3a1 | 74 | C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus | 95.64 | |
| d1fova_ | 82 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 95.62 | |
| d1ttza_ | 75 | Hypothetical protein XCC2852 {Xanthomonas campestr | 95.5 | |
| d1ktea_ | 105 | Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr | 95.41 | |
| d1a8la1 | 119 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 95.36 | |
| d1beda_ | 181 | Disulfide-bond formation facilitator (DsbA) {Vibri | 95.35 | |
| d1un2a_ | 195 | Disulfide-bond formation facilitator (DsbA) {Esche | 95.24 | |
| d1fvka_ | 188 | Disulfide-bond formation facilitator (DsbA) {Esche | 95.14 | |
| d1kbea_ | 49 | Kinase suppressor of Ras, Ksr {Mouse (Mus musculus | 95.03 | |
| d1r7ha_ | 74 | Glutaredoxin-like NRDH-redoxin {Corynebacterium am | 93.59 | |
| d2djka1 | 133 | Protein disulfide isomerase, PDI {Fungi (Humicola | 93.19 | |
| d1h75a_ | 76 | Glutaredoxin-like NRDH-redoxin {Escherichia coli [ | 92.51 | |
| d1faqa_ | 52 | RAF-1 {Human (Homo sapiens) [TaxId: 9606]} | 92.06 | |
| d1ktea_ | 105 | Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr | 91.71 | |
| d1a8la1 | 119 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 91.1 | |
| d1iloa_ | 77 | MTH985, a thioredoxin {Archaeon Methanobacterium t | 90.19 | |
| d1fova_ | 82 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 88.36 | |
| d2b5ea3 | 125 | Protein disulfide isomerase, PDI {Baker's yeast (S | 88.2 | |
| d2axoa1 | 225 | Hypothetical protein Atu2684 {Agrobacterium tumefa | 87.61 | |
| d2djka1 | 133 | Protein disulfide isomerase, PDI {Fungi (Humicola | 87.4 | |
| d1tbna_ | 66 | Protein kinase c-gamma {Rat (Rattus rattus) [TaxId | 87.18 | |
| d1iloa_ | 77 | MTH985, a thioredoxin {Archaeon Methanobacterium t | 86.68 | |
| d1ttza_ | 75 | Hypothetical protein XCC2852 {Xanthomonas campestr | 86.62 | |
| d1xa6a3 | 62 | Beta-chimaerin, middle domain {Human (Homo sapiens | 85.31 | |
| d1nm3a1 | 74 | C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus | 85.02 |
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Probab=99.93 E-value=1.6e-25 Score=192.63 Aligned_cols=138 Identities=37% Similarity=0.622 Sum_probs=121.2
Q ss_pred hhccCcCCCce-ecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHh
Q 011791 80 SVLTSHSRDFV-ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 158 (477)
Q Consensus 80 ~~~g~~~p~fl-~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~ 158 (477)
+-+++.+|++. +..+|..|++++++||+|+|+|||+||+||+.++|.|+++|++|.+. .+|+||+|+.|.+.+.+.++
T Consensus 2 ~~~~k~~P~~~~~~~~~~~v~l~~~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~-~~~~vi~is~d~~~~~~~~~ 80 (144)
T d1o73a_ 2 SGLAKYLPGATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA-KNFEVVLISWDENESDFHDY 80 (144)
T ss_dssp CGGGGTSCTTCCBBCTTSCBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCSSHHHHHHH
T ss_pred CCcccCCCCceeeccCCCEEeHHHhCCCEEEEEeChhhCccchhhhHHHHHHHHHHhhc-cCeEEEEEecchhHHHHHHH
Confidence 45788899985 47778889999999999999999999999999999999999999653 24999999999999999999
Q ss_pred hcCCCCccccCCch-hHHHHHHHcCcccCCeEEEECCC-CCccccch-hhHHhhcCCCCCCCC
Q 011791 159 LGSMPWLALPFKDK-SREKLARYFELSTLPTLVIIGPD-GKTLHSNV-AEAIEEHGVGAFPFT 218 (477)
Q Consensus 159 ~~~~~~~~~~~~~~-~~~~l~~~~~v~~~P~~~lid~~-G~i~~~~~-~~~i~~~g~~a~P~~ 218 (477)
+.+++|..+++... ....+.+.|++.++|+++|||++ |+|+.+++ .+.+++.....|||.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~y~v~~~Pt~~lID~~~G~Ii~~~~~~~~~~d~~~~~fpw~ 143 (144)
T d1o73a_ 81 YGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIEDPDGANFPWP 143 (144)
T ss_dssp HTTCSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred HHhccccceeeeccchHHHHHHHcCCCcCCEEEEEECCCCEEEeecchhhhhhCcccccCCCC
Confidence 99999999888654 44678999999999999999997 89999886 566778888889985
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Probab=99.92 E-value=4.3e-25 Score=189.59 Aligned_cols=128 Identities=36% Similarity=0.657 Sum_probs=113.9
Q ss_pred eecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccC
Q 011791 90 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPF 169 (477)
Q Consensus 90 l~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~ 169 (477)
+++.+|..|++++++||+|+|+|||+||+||+.++|.|.++|+++++.+ +|+||+|+.|.+.+.+.+++++++|..+++
T Consensus 13 ~l~~~~~~v~ls~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~-~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~ 91 (144)
T d1i5ga_ 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKK-NFEVMLISWDESAEDFKDYYAKMPWLALPF 91 (144)
T ss_dssp EEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTT-TEEEEEEECCSSHHHHHHHHTTCSSEECCT
T ss_pred hccCCCCEeeHHHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhcc-CcEEEEEeccccHHHHHHHHHhCCCCceee
Confidence 4677899999999999999999999999999999999999999998752 499999999999999999999999998888
Q ss_pred Cchh-HHHHHHHcCcccCCeEEEECCC-CCccccchhhHHh-hcCCCCCCCC
Q 011791 170 KDKS-REKLARYFELSTLPTLVIIGPD-GKTLHSNVAEAIE-EHGVGAFPFT 218 (477)
Q Consensus 170 ~~~~-~~~l~~~~~v~~~P~~~lid~~-G~i~~~~~~~~i~-~~g~~a~P~~ 218 (477)
.+.. ...+.+.|++.++|+++|||++ |+++..+++..+. +.....|||.
T Consensus 92 ~d~~~~~~l~~~y~v~~iPt~~lid~~~G~vi~~~g~~~v~~d~~~~~fpw~ 143 (144)
T d1i5ga_ 92 EDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPWP 143 (144)
T ss_dssp TCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred EChHHHHHHHHHCCCCCcCEEEEEeCCCCEEEeehhHHHHhhCcccccCCCC
Confidence 7654 3568899999999999999996 9999988776665 6677889985
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Probab=99.90 E-value=1.5e-23 Score=179.91 Aligned_cols=126 Identities=42% Similarity=0.844 Sum_probs=108.6
Q ss_pred eccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccC
Q 011791 251 VGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFG 330 (477)
Q Consensus 251 l~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~ 330 (477)
++.+|.++++++++||+|+|+|||+||++|+.++|.|++++++++++ .+++|++|+.|.+.+++++++++++|..+++.
T Consensus 14 l~~~~~~v~ls~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~-~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~ 92 (144)
T d1i5ga_ 14 LKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK-KNFEVMLISWDESAEDFKDYYAKMPWLALPFE 92 (144)
T ss_dssp EETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCSSHHHHHHHHTTCSSEECCTT
T ss_pred ccCCCCEeeHHHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhc-cCcEEEEEeccccHHHHHHHHHhCCCCceeeE
Confidence 37778899999999999999999999999999999999999999864 47999999999999999999999999888877
Q ss_pred cch-hHHHHHhcCCCCcceEEEECCC-CcEEEeccchhhhhc-CCCCCCC
Q 011791 331 DAR-KASLSRKFKVSGIPMLVAIGPS-GRTITKEARDMIAVH-GAEAYPF 377 (477)
Q Consensus 331 ~d~-~~~l~~~~~v~~~Pt~~lid~~-G~iv~~~~~~~~~~~-g~~~~~~ 377 (477)
... ...+.+.|+|+++|+++|||++ |+|+..+++..+... .+..+|+
T Consensus 93 d~~~~~~l~~~y~v~~iPt~~lid~~~G~vi~~~g~~~v~~d~~~~~fpw 142 (144)
T d1i5ga_ 93 DRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPW 142 (144)
T ss_dssp CHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTC
T ss_pred ChHHHHHHHHHCCCCCcCEEEEEeCCCCEEEeehhHHHHhhCcccccCCC
Confidence 554 3468899999999999999996 999999887766542 3333443
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Probab=99.89 E-value=3.1e-23 Score=178.03 Aligned_cols=122 Identities=39% Similarity=0.765 Sum_probs=107.5
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhc
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 321 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~ 321 (477)
....|++.. ..+|.++++++++||+|+|+|||+||++|+.++|.|++++++|+.+ .+++|++|+.|.+.+++++++++
T Consensus 5 ~k~~P~~~~~~~~~~~v~l~~~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~-~~~~vi~is~d~~~~~~~~~~~~ 83 (144)
T d1o73a_ 5 AKYLPGATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA-KNFEVVLISWDENESDFHDYYGK 83 (144)
T ss_dssp GGTSCTTCCBBCTTSCBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCSSHHHHHHHHTT
T ss_pred ccCCCCceeeccCCCEEeHHHhCCCEEEEEeChhhCccchhhhHHHHHHHHHHhhc-cCeEEEEEecchhHHHHHHHHHh
Confidence 334578877 7788899999999999999999999999999999999999999653 37999999999999999999999
Q ss_pred CCCceeccCcc-hhHHHHHhcCCCCcceEEEECCC-CcEEEeccch
Q 011791 322 MPWLALPFGDA-RKASLSRKFKVSGIPMLVAIGPS-GRTITKEARD 365 (477)
Q Consensus 322 ~~~~~~p~~~d-~~~~l~~~~~v~~~Pt~~lid~~-G~iv~~~~~~ 365 (477)
++|..+++..+ ....+.+.|+|+++|+++|||++ |+|+.++++.
T Consensus 84 ~~~~~~~~~~~~~~~~l~~~y~v~~~Pt~~lID~~~G~Ii~~~~~~ 129 (144)
T d1o73a_ 84 MPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQART 129 (144)
T ss_dssp CSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHH
T ss_pred ccccceeeeccchHHHHHHHcCCCcCCEEEEEECCCCEEEeecchh
Confidence 99988887654 45578999999999999999997 9999987644
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Probab=99.89 E-value=2.7e-23 Score=178.49 Aligned_cols=138 Identities=29% Similarity=0.575 Sum_probs=120.4
Q ss_pred ccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhc
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLG 160 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~ 160 (477)
+++.+|+|.+ +.+|++|++++++||+|+|+|||+||++|+.++|.|.+++++|...+ ++.+|+|+.|.+.+.+..++.
T Consensus 2 ~~k~~P~~~~~~~~g~~v~l~~l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~-~~~~v~is~d~~~~~~~~~~~ 80 (144)
T d1o8xa_ 2 LDKYLPGIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESK-NFEVVFCTWDEEEDGFAGYFA 80 (144)
T ss_dssp GGGTSTTCCEEEETTEEEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTT-TEEEEEEECCCSHHHHHHHHT
T ss_pred CCCCCCCcEeEcCCCCEEeHHHhCCCEEEEEeccccccccccccchhHHhhhhccccc-ccccccccccccHHHHHHHHh
Confidence 4678999954 89999999999999999999999999999999999999999997652 499999999999999999999
Q ss_pred CCCCccccCCch-hHHHHHHHcCcccCCeEEEECCC-CCccccchhh-HHhhcCCCCCCCChh
Q 011791 161 SMPWLALPFKDK-SREKLARYFELSTLPTLVIIGPD-GKTLHSNVAE-AIEEHGVGAFPFTPE 220 (477)
Q Consensus 161 ~~~~~~~~~~~~-~~~~l~~~~~v~~~P~~~lid~~-G~i~~~~~~~-~i~~~g~~a~P~~~~ 220 (477)
...|..+++... ...++.+.|+++++|+++|||++ |+|++.+++. +.++.....|||...
T Consensus 81 ~~~~~~~~~~~~d~~~~l~~~y~v~~~Pt~~liD~~~G~Vi~~~~~~~~~~d~~~~~~~w~~~ 143 (144)
T d1o8xa_ 81 KMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLVKDPEGEQFPWKDA 143 (144)
T ss_dssp TCSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHTTCTTCTTTTCCCC
T ss_pred hccccceeeecccchhhHHHHcCCCcCCEEEEEeCCCCEEEEEechhhhhhCcccccCCCCCC
Confidence 999888887653 44679999999999999999998 8999888654 446777788999753
|
| >d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593 species: Thermus thermophilus [TaxId: 274]
Probab=99.89 E-value=2.4e-23 Score=186.47 Aligned_cols=148 Identities=11% Similarity=0.206 Sum_probs=121.8
Q ss_pred hccCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC-------CChh
Q 011791 242 LVSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQT 313 (477)
Q Consensus 242 ~~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d-------~~~~ 313 (477)
++...|+|.+ +++|+.++|++++||+|||+|||+||++|++++|.|++++++|+++ +.+++|+++ ...+
T Consensus 8 vG~~aPdF~l~d~~G~~~~Lsd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~---v~~v~i~snd~~~~~~~~~e 84 (187)
T d2cvba1 8 LESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK---VAFVGINANDYEKYPEDAPE 84 (187)
T ss_dssp TTCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT---EEEEEEECCCTTTCGGGSHH
T ss_pred CCCccCccEeecCCCCEEEHHHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhcccc---ceeeeeeccccccccccchH
Confidence 4567799999 9999999999999999999999999999999999999999999764 888888753 2346
Q ss_pred HHHHHHhcCCCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHH
Q 011791 314 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMA 393 (477)
Q Consensus 314 ~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 393 (477)
.++++.++++ +++|++.|.+..+++.|++.++|+++|||++|+|+++++.+.. ++.. ......+|.++|+.++
T Consensus 85 ~~~~~~~~~~-~~~p~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~y~G~idd~--~~~~----~~~~~~~L~~Ai~~ll 157 (187)
T d2cvba1 85 KMAAFAEEHG-IFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYHGRVNDN--PKDP----SKVQSHDLEAAIEALL 157 (187)
T ss_dssp HHHHHHHHHT-CCSCEEECSSSHHHHHTTCCEESEEEEECTTCBEEEEECSSSC--TTCG----GGCCCCHHHHHHHHHH
T ss_pred HHHHHHHHhC-CcceeeechhhhhcccccccceeeEEEEcCCCeEEEEeeecCC--CCCC----CCCCHHHHHHHHHHHH
Confidence 7888888887 6799999999999999999999999999999999998654321 1111 1112256889999999
Q ss_pred cCCchh
Q 011791 394 KGWPEN 399 (477)
Q Consensus 394 ~~~~~~ 399 (477)
++.+..
T Consensus 158 ~g~~~~ 163 (187)
T d2cvba1 158 RGEEPP 163 (187)
T ss_dssp TTCCCC
T ss_pred cCCCCC
Confidence 886543
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.89 E-value=7.7e-23 Score=173.35 Aligned_cols=113 Identities=22% Similarity=0.362 Sum_probs=103.5
Q ss_pred CCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCC
Q 011791 246 DLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW 324 (477)
Q Consensus 246 ~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~ 324 (477)
..+|.+ +++|+++++++++||++||+|||+||++|+.++|.|.++++++++ ..+++|+.+...+..+++++++++
T Consensus 5 ~~df~~~~~~G~~~~l~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~----~~~v~v~~~d~~~~~~~~~~~~~~ 80 (134)
T d1zzoa1 5 QLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE----VTFVGVAGLDQVPAMQEFVNKYPV 80 (134)
T ss_dssp GGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSSCHHHHHHHHHHTTC
T ss_pred CcceeEEcCCCCEEeHHHhCCCEEEEEecccccCcccccchhhHHHHhhhcc----cccccccccccchhHHHHHHhcCC
Confidence 367988 999999999999999999999999999999999999999998753 668888888888999999999998
Q ss_pred ceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEec
Q 011791 325 LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 325 ~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
..+|...|....+.+.|++.++|+++|||++|+|....
T Consensus 81 ~~~~~l~D~~~~~~~~~~v~~~P~~~iiD~~G~i~~~~ 118 (134)
T d1zzoa1 81 KTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVDVVR 118 (134)
T ss_dssp TTSEEEECTTCHHHHHTTCCSSSEEEEECTTCCEEEEE
T ss_pred cceeEEeeccchHHHhcCCCccCeEEEECCCCeEEEEE
Confidence 88999988888999999999999999999999987653
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.89 E-value=3e-23 Score=175.88 Aligned_cols=113 Identities=21% Similarity=0.349 Sum_probs=103.1
Q ss_pred CCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCC
Q 011791 245 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 323 (477)
Q Consensus 245 ~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~ 323 (477)
..++|++ +++|+++++++++||++||+|||+||++|+.++|.|++++++++ ++.+++|+.+.+.+.+++|+++++
T Consensus 3 ~~~~f~~~~~~G~~~~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~----~v~~v~v~~~~~~~~~~~~~~~~~ 78 (134)
T d1lu4a_ 3 ERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP----AVTFVGIATRADVGAMQSFVSKYN 78 (134)
T ss_dssp GGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEECSSCHHHHHHHHHHHT
T ss_pred CCCcceeECCCCCEEcHHHhCCCEEEEEEeecccCCceecchhHHHHhhhhc----cccccccccccchhhhhhhhhhhc
Confidence 3478999 99999999999999999999999999999999999999987653 588999999989999999999987
Q ss_pred CceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEec
Q 011791 324 WLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 324 ~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
+.+|+..|....+++.|+|.++|++++||++|+++...
T Consensus 79 -~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~v~ 116 (134)
T d1lu4a_ 79 -LNFTNLNDADGVIWARYNVPWQPAFVFYRADGTSTFVN 116 (134)
T ss_dssp -CCSEEEECTTSHHHHHTTCCSSSEEEEECTTSCEEEEC
T ss_pred -cccceeeCchHHHHHHcCCCcCCEEEEEeCCCeEEEEe
Confidence 67888888888999999999999999999999987653
|
| >d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol-disulfide oxidoreductase ResA species: Bacillus subtilis [TaxId: 1423]
Probab=99.88 E-value=1.1e-22 Score=172.97 Aligned_cols=132 Identities=26% Similarity=0.544 Sum_probs=116.6
Q ss_pred cCCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcC
Q 011791 244 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 322 (477)
Q Consensus 244 ~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~ 322 (477)
...|+|.+ +.+|+++++++++||+++|+||++||++|+.++|.++++++++.++ ++.+++|+++.+.+++++|++++
T Consensus 3 ~~~P~f~l~~~~G~~~~l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~~v~i~~~~~~~~~~~~~~~~ 80 (137)
T d1st9a_ 3 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQ--GVEIVAVNVGESKIAVHNFMKSY 80 (137)
T ss_dssp EECCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG--TEEEEEEEESCCHHHHHHHHHHT
T ss_pred CcCCCeEEECCCcCEEeHHHhCCCEEEEEEeeccccceeeccccccccccccccc--ccccccccccchhhhHHHHHHHc
Confidence 45699999 9999999999999999999999999999999999999999999876 79999999998889999999988
Q ss_pred CCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHH
Q 011791 323 PWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQY 389 (477)
Q Consensus 323 ~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~ 389 (477)
+ .++|+..|....+++.|++.++|+++|||++|+++.+.. | +.+++.++++++.|
T Consensus 81 ~-~~~~~~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~-------G----~~~~~~~~~~l~~l 135 (137)
T d1st9a_ 81 G-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVT-------G----TMTESMIHDYMNLI 135 (137)
T ss_dssp T-CCSCEEEETTSHHHHHTTCCSSCEEEEECTTSEEEEEEE-------S----CCCHHHHHHHHHHH
T ss_pred C-CCccccccccchhhhhhhccccceEEEECCCCEEEEEEE-------C----CCCHHHHHHHHHhh
Confidence 7 568888888889999999999999999999999998843 2 45666666665443
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Probab=99.87 E-value=4.5e-22 Score=170.69 Aligned_cols=122 Identities=39% Similarity=0.792 Sum_probs=110.1
Q ss_pred CCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCC
Q 011791 245 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 323 (477)
Q Consensus 245 ~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~ 323 (477)
..|+|.+ +.+|+++++++++||+|+|+|||+||++|+.++|.|.+++++|..+ .++.+++|+.|.+.+++..++....
T Consensus 5 ~~P~~~~~~~~g~~v~l~~l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~-~~~~~v~is~d~~~~~~~~~~~~~~ 83 (144)
T d1o8xa_ 5 YLPGIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHES-KNFEVVFCTWDEEEDGFAGYFAKMP 83 (144)
T ss_dssp TSTTCCEEEETTEEEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCCSHHHHHHHHTTCS
T ss_pred CCCCcEeEcCCCCEEeHHHhCCCEEEEEeccccccccccccchhHHhhhhcccc-cccccccccccccHHHHHHHHhhcc
Confidence 4588988 9999999999999999999999999999999999999999999764 3799999999999999999999999
Q ss_pred CceeccCc-chhHHHHHhcCCCCcceEEEECCC-CcEEEeccchhh
Q 011791 324 WLALPFGD-ARKASLSRKFKVSGIPMLVAIGPS-GRTITKEARDMI 367 (477)
Q Consensus 324 ~~~~p~~~-d~~~~l~~~~~v~~~Pt~~lid~~-G~iv~~~~~~~~ 367 (477)
|..+++.. +....+.+.|+|+++|+++|||++ |+|+...++..+
T Consensus 84 ~~~~~~~~~d~~~~l~~~y~v~~~Pt~~liD~~~G~Vi~~~~~~~~ 129 (144)
T d1o8xa_ 84 WLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 129 (144)
T ss_dssp SEECCGGGHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHH
T ss_pred ccceeeecccchhhHHHHcCCCcCCEEEEEeCCCCEEEEEechhhh
Confidence 99988865 456789999999999999999998 899988776544
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Probab=99.85 E-value=6.1e-22 Score=169.63 Aligned_cols=111 Identities=20% Similarity=0.344 Sum_probs=100.3
Q ss_pred ee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC-----ChhHHHHHHhcCC
Q 011791 250 VV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-----DQTSFDEFFKGMP 323 (477)
Q Consensus 250 ~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~-----~~~~~~~~~~~~~ 323 (477)
+| +.+|+++++++++||++||+|||+||++|+.++|.|++++++++.. ++.+++|+.+. ...+..+++....
T Consensus 7 ~l~~~~~~~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~--~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 84 (143)
T d2fy6a1 7 TLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFS--SANLITVASPGFLHEKKDGDFQKWYAGLN 84 (143)
T ss_dssp TCEETTSCBGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGT--TSEEEEEECTTSTTCCCTTHHHHHHTTSC
T ss_pred eeECCCCCEeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccC--CcEEEEEeeeecccccchhhhhhhhhhcC
Confidence 45 8999999999999999999999999999999999999999999866 68899998753 3456788888888
Q ss_pred CceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEec
Q 011791 324 WLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 324 ~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
+..+|+..|....+++.|+++++|+++|||++|+|+.+.
T Consensus 85 ~~~~~~~~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~~ 123 (143)
T d2fy6a1 85 YPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIV 123 (143)
T ss_dssp CTTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEE
T ss_pred CcccccccccchHHHHHcCCCccCEEEEECCCCEEEEEE
Confidence 899999999999999999999999999999999999874
|
| >d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.85 E-value=2.2e-21 Score=166.31 Aligned_cols=106 Identities=21% Similarity=0.277 Sum_probs=93.5
Q ss_pred ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCc
Q 011791 252 GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGD 331 (477)
Q Consensus 252 ~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~ 331 (477)
+.++..+++++++||++||+|||+||++|+.++|.+.++++.+ ++++++|+.+....+.+++..++++...+...
T Consensus 18 ~~~~~~~~~~~~kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (144)
T d1knga_ 18 NVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDK-----RFQLVGINYKDAADNARRFLGRYGNPFGRVGV 92 (144)
T ss_dssp TEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTCT-----TSEEEEEEESCCHHHHHHHHHHHCCCCSEEEE
T ss_pred CCcCCccCHHHhCCCEEEEEeeccccccccccCchhhhhhhcc-----CceeEEEEeeechHHHHHHHHHcCCccccccc
Confidence 3344778999999999999999999999999999998876554 46799999998888999999988877777777
Q ss_pred chhHHHHHhcCCCCcceEEEECCCCcEEEec
Q 011791 332 ARKASLSRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 332 d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
|....+.+.|++.++|+++|||++|+|+.+.
T Consensus 93 d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~ 123 (144)
T d1knga_ 93 DANGRASIEWGVYGVPETFVVGREGTIVYKL 123 (144)
T ss_dssp ETTSHHHHHTTCCSSCEEEEECTTSBEEEEE
T ss_pred cccchhhhhcCccccceEEEEcCCCeEEEEE
Confidence 8888999999999999999999999999984
|
| >d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=3.4e-21 Score=163.52 Aligned_cols=107 Identities=22% Similarity=0.217 Sum_probs=94.7
Q ss_pred eccCCCceecccC-CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceecc
Q 011791 251 VGKNGGKVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPF 329 (477)
Q Consensus 251 l~~~g~~~~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~ 329 (477)
||.+|+.++.+.+ +||+|||+|||+||++|+.++|.|++++++ ++.+++++.+.+......++.+.++..++.
T Consensus 5 ld~~g~~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~------~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~ 78 (136)
T d1z5ye1 5 LDNPGQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQ------GIRVVGMNYKDDRQKAISWLKELGNPYALS 78 (136)
T ss_dssp SSSTTCEECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHHT------TCCEEEEEESCCHHHHHHHHHHHCCCCSEE
T ss_pred ccCCCcEecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhhh------hhhhcccccccchhhhHHHHHHcCCcccee
Confidence 3667999999998 899999999999999999999999887542 478999999988889999999888777777
Q ss_pred CcchhHHHHHhcCCCCcceEEEECCCCcEEEecc
Q 011791 330 GDARKASLSRKFKVSGIPMLVAIGPSGRTITKEA 363 (477)
Q Consensus 330 ~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~ 363 (477)
..|.+..+.+.|+|.++|+++|||++|+|+.+..
T Consensus 79 ~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~ 112 (136)
T d1z5ye1 79 LFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHA 112 (136)
T ss_dssp EEESSCHHHHHHTCCSBSEEEEECTTSCEEEEEE
T ss_pred ecccchhHHHhcccCCcceEEEEcCCCEEEEEEE
Confidence 7788888999999999999999999999998843
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Probab=99.84 E-value=1e-20 Score=161.86 Aligned_cols=116 Identities=17% Similarity=0.223 Sum_probs=101.8
Q ss_pred ccCCCccee-c--cCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC-----ChhH
Q 011791 243 VSGDLDFVV-G--KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-----DQTS 314 (477)
Q Consensus 243 ~~~~p~f~l-~--~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~-----~~~~ 314 (477)
+.+.|+|.+ + .+|+.++++.+.||+++|+|||+||++|+.++|.|++++++++++ +.+|+|+++. +.+.
T Consensus 4 g~~aP~~~~~~~~~ng~~~~~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~---~~~i~v~~~~~~~~~~~~~ 80 (143)
T d2b5xa1 4 RQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ---LNVVAVHMPRSEDDLDPGK 80 (143)
T ss_dssp TCBCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEECCCSTTTSSHHH
T ss_pred CCcCCCCcCCccCcCCeEecHHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhcc---ccceeEEeeccccccchhh
Confidence 455688875 3 589999999999999999999999999999999999999999864 8899998753 3456
Q ss_pred HHHHHhcCCCceeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEec
Q 011791 315 FDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 315 ~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
+++++++++ +.+|+..|.+..+.+.|++.++|++++||++|+|+.+.
T Consensus 81 ~~~~~~~~~-~~~p~~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~ 127 (143)
T d2b5xa1 81 IKETAAEHD-ITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQ 127 (143)
T ss_dssp HHHHHHHTT-CCSCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEE
T ss_pred hhhHHHhhc-cCccccccCccchHHHcCCCcCCEEEEECCCCEEEEEE
Confidence 889999888 47888888888999999999999999999999999874
|
| >d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593 species: Thermus thermophilus [TaxId: 274]
Probab=99.83 E-value=3.8e-21 Score=171.93 Aligned_cols=119 Identities=15% Similarity=0.168 Sum_probs=98.9
Q ss_pred hccCcCCCce-ecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC-------CCH
Q 011791 81 VLTSHSRDFV-ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------DEE 152 (477)
Q Consensus 81 ~~g~~~p~fl-~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D-------~~~ 152 (477)
-+|+++|+|. .+.+|+.++|++++||+|+|+|||+||++|+.++|.|.+++++|+++ +.+|+|+.. .+.
T Consensus 7 ~vG~~aPdF~l~d~~G~~~~Lsd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~---v~~v~i~snd~~~~~~~~~ 83 (187)
T d2cvba1 7 PLESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK---VAFVGINANDYEKYPEDAP 83 (187)
T ss_dssp CTTCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT---EEEEEEECCCTTTCGGGSH
T ss_pred CCCCccCccEeecCCCCEEEHHHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhcccc---ceeeeeeccccccccccch
Confidence 3699999995 49999999999999999999999999999999999999999999864 888888753 234
Q ss_pred HHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 153 ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
+.++++.+... +.+|...+....+++.|++..+|+++|||++|+++++..
T Consensus 84 e~~~~~~~~~~-~~~p~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~y~G~ 133 (187)
T d2cvba1 84 EKMAAFAEEHG-IFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYHGR 133 (187)
T ss_dssp HHHHHHHHHHT-CCSCEEECSSSHHHHHTTCCEESEEEEECTTCBEEEEEC
T ss_pred HHHHHHHHHhC-CcceeeechhhhhcccccccceeeEEEEcCCCeEEEEee
Confidence 56666666543 334444444567899999999999999999999998764
|
| >d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol-disulfide oxidoreductase ResA species: Bacillus subtilis [TaxId: 1423]
Probab=99.83 E-value=8.9e-21 Score=161.07 Aligned_cols=118 Identities=25% Similarity=0.445 Sum_probs=103.3
Q ss_pred cCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcC
Q 011791 83 TSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGS 161 (477)
Q Consensus 83 g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~ 161 (477)
|.++|+|.+ +.+|+.+++++++||+++|+||++||++|..+++.++++++++.+.+ +.+|+|+.|++.+.+++++++
T Consensus 2 G~~~P~f~l~~~~G~~~~l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~i~~~~~~~~~~~~~~~ 79 (137)
T d1st9a_ 2 GSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG--VEIVAVNVGESKIAVHNFMKS 79 (137)
T ss_dssp CEECCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESCCHHHHHHHHHH
T ss_pred cCcCCCeEEECCCcCEEeHHHhCCCEEEEEEeeccccceeecccccccccccccccc--cccccccccchhhhHHHHHHH
Confidence 678999955 89999999999999999999999999999999999999999999887 999999999999999998886
Q ss_pred CCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 162 MPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
+.+ .++...+....+++.|++.++|+++|+|++|+++++..
T Consensus 80 ~~~-~~~~~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~ 120 (137)
T d1st9a_ 80 YGV-NFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVT 120 (137)
T ss_dssp TTC-CSCEEEETTSHHHHHTTCCSSCEEEEECTTSEEEEEEE
T ss_pred cCC-CccccccccchhhhhhhccccceEEEECCCCEEEEEEE
Confidence 542 23333344457899999999999999999999988753
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.82 E-value=3.5e-20 Score=164.35 Aligned_cols=116 Identities=30% Similarity=0.460 Sum_probs=100.7
Q ss_pred CCCccee-ccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC-ChhHHHHHHhcC
Q 011791 245 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-DQTSFDEFFKGM 322 (477)
Q Consensus 245 ~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~-~~~~~~~~~~~~ 322 (477)
..|+|.+ +.+|+.+++++++||+|||+||++||++|+.+.+.+++++++++.+ ++.|++|++|. +.+.+++|+++.
T Consensus 35 ~~Pdf~l~d~~G~~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~--~~~vv~vs~d~~~~~~~~~~~~~~ 112 (176)
T d1jfua_ 35 KLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGP--NFEVVAINIDTRDPEKPKTFLKEA 112 (176)
T ss_dssp BCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBT--TEEEEEEECCCSCTTHHHHHHHHT
T ss_pred cCCCeEEECCCcCEEeHHHhCCCEEEEEeccCcccchHHHHHhhhhcccccccc--ccccccccccccchhhhhhhHhhh
Confidence 3589999 9999999999999999999999999999999999999999999765 68999999884 567899999999
Q ss_pred CCceeccCcchhHH----HHHhcCCCCcceEEEECCCCcEEEec
Q 011791 323 PWLALPFGDARKAS----LSRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 323 ~~~~~p~~~d~~~~----l~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
++..+++..+.... +...|++.++|+++|||++|+|+.+.
T Consensus 113 ~~~~~~~~~d~~~~~~~~~~~~~~v~~~P~~~lID~~G~I~~~~ 156 (176)
T d1jfua_ 113 NLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATI 156 (176)
T ss_dssp TCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEE
T ss_pred CCcceeeeecchhHHHHHHhhhccCCCCCeEEEEcCCCEEEEEE
Confidence 87666666654444 44567789999999999999999873
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.82 E-value=9.3e-21 Score=160.30 Aligned_cols=113 Identities=15% Similarity=0.191 Sum_probs=95.9
Q ss_pred cCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcC
Q 011791 83 TSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGS 161 (477)
Q Consensus 83 g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~ 161 (477)
|...++|.+ +.+|+++++++++||+++|+|||+||++|+.++|.|.+++++++ + +.+++|+.+++.+.+++++++
T Consensus 1 ~d~~~~f~~~~~~G~~~~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~--~--v~~v~v~~~~~~~~~~~~~~~ 76 (134)
T d1lu4a_ 1 ADERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP--A--VTFVGIATRADVGAMQSFVSK 76 (134)
T ss_dssp CGGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEECSSCHHHHHHHHHH
T ss_pred CCCCCcceeECCCCCEEcHHHhCCCEEEEEEeecccCCceecchhHHHHhhhhc--c--ccccccccccchhhhhhhhhh
Confidence 346788855 99999999999999999999999999999999999999998764 3 789999999998888888886
Q ss_pred CCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccc
Q 011791 162 MPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLH 200 (477)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~ 200 (477)
+. +.+|...+....+++.|++.++|+++|||++|+++.
T Consensus 77 ~~-~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~ 114 (134)
T d1lu4a_ 77 YN-LNFTNLNDADGVIWARYNVPWQPAFVFYRADGTSTF 114 (134)
T ss_dssp HT-CCSEEEECTTSHHHHHTTCCSSSEEEEECTTSCEEE
T ss_pred hc-cccceeeCchHHHHHHcCCCcCCEEEEEeCCCeEEE
Confidence 54 334444444567899999999999999999999764
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.81 E-value=3.2e-20 Score=156.97 Aligned_cols=111 Identities=15% Similarity=0.172 Sum_probs=95.9
Q ss_pred CCc-eecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCc
Q 011791 87 RDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWL 165 (477)
Q Consensus 87 p~f-l~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~ 165 (477)
.+| +.+.+|+++++++++||+++|+|||+||++|+.++|.|.++++++++ ..+++|+.+++.+...+++..+.+.
T Consensus 6 ~df~~~~~~G~~~~l~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~----~~~v~v~~~d~~~~~~~~~~~~~~~ 81 (134)
T d1zzoa1 6 LQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE----VTFVGVAGLDQVPAMQEFVNKYPVK 81 (134)
T ss_dssp GCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSSCHHHHHHHHHHTTCT
T ss_pred cceeEEcCCCCEEeHHHhCCCEEEEEecccccCcccccchhhHHHHhhhcc----cccccccccccchhHHHHHHhcCCc
Confidence 357 44899999999999999999999999999999999999999999865 4578888888888888888877765
Q ss_pred cccCCchhHHHHHHHcCcccCCeEEEECCCCCcccc
Q 011791 166 ALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 166 ~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 201 (477)
.++...+....+.+.|++.++|+++|+|++|++.+.
T Consensus 82 ~~~~l~D~~~~~~~~~~v~~~P~~~iiD~~G~i~~~ 117 (134)
T d1zzoa1 82 TFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVDVV 117 (134)
T ss_dssp TSEEEECTTCHHHHHTTCCSSSEEEEECTTCCEEEE
T ss_pred ceeEEeeccchHHHhcCCCccCeEEEECCCCeEEEE
Confidence 555555555679999999999999999999998654
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Probab=99.79 E-value=7.4e-20 Score=156.43 Aligned_cols=112 Identities=16% Similarity=0.186 Sum_probs=97.4
Q ss_pred eecCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC-----CHHHHHHhhcCCCC
Q 011791 90 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-----EEESFKRDLGSMPW 164 (477)
Q Consensus 90 l~~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~-----~~~~~~~~~~~~~~ 164 (477)
+.+.+|+++++++++||+++|+|||+||++|+.++|.|.+++++++..+ +.+++|+.+. +.....+++....+
T Consensus 8 l~~~~~~~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 85 (143)
T d2fy6a1 8 LKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSS--ANLITVASPGFLHEKKDGDFQKWYAGLNY 85 (143)
T ss_dssp CEETTSCBGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTT--SEEEEEECTTSTTCCCTTHHHHHHTTSCC
T ss_pred eECCCCCEeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccCC--cEEEEEeeeecccccchhhhhhhhhhcCC
Confidence 4478999999999999999999999999999999999999999999887 8899998753 34456777777777
Q ss_pred ccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 165 LALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
..+|...+....+++.|++.++|+++|||++|++++...
T Consensus 86 ~~~~~~~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~ 124 (143)
T d2fy6a1 86 PKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVK 124 (143)
T ss_dssp TTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEEE
T ss_pred cccccccccchHHHHHcCCCccCEEEEECCCCEEEEEEE
Confidence 777777666778999999999999999999999987753
|
| >d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=1.2e-19 Score=153.89 Aligned_cols=107 Identities=14% Similarity=0.079 Sum_probs=88.2
Q ss_pred ecCCCCeEecCCC-CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccC
Q 011791 91 ISSDGRKISVSDL-EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPF 169 (477)
Q Consensus 91 ~~~~g~~v~ls~l-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~ 169 (477)
+|.+|+.++.+++ +||+|+|+|||+||+||+.++|.|.++++ .+ +.+++++.+.+......++....+...+.
T Consensus 5 ld~~g~~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~----~~--~~vi~i~~~~~~~~~~~~~~~~~~~~~~~ 78 (136)
T d1z5ye1 5 LDNPGQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSA----QG--IRVVGMNYKDDRQKAISWLKELGNPYALS 78 (136)
T ss_dssp SSSTTCEECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHH----TT--CCEEEEEESCCHHHHHHHHHHHCCCCSEE
T ss_pred ccCCCcEecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhh----hh--hhhcccccccchhhhHHHHHHcCCcccee
Confidence 3677999999998 89999999999999999999999988754 34 88999999998888887777554443333
Q ss_pred CchhHHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 170 KDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 170 ~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
..+....+.+.|++.++|+++|||++|+++.+..
T Consensus 79 ~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~ 112 (136)
T d1z5ye1 79 LFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHA 112 (136)
T ss_dssp EEESSCHHHHHHTCCSBSEEEEECTTSCEEEEEE
T ss_pred ecccchhHHHhcccCCcceEEEEcCCCEEEEEEE
Confidence 3344456889999999999999999999998754
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.76 E-value=9.6e-19 Score=154.89 Aligned_cols=118 Identities=25% Similarity=0.327 Sum_probs=97.2
Q ss_pred cCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC-CHHHHHHhhc
Q 011791 83 TSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-EEESFKRDLG 160 (477)
Q Consensus 83 g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~-~~~~~~~~~~ 160 (477)
+.++|+|.+ +.+|+.+++++++||+|+|+||++||++|+.+++.++++++++.+.+ +.||+|++|. +.+.++++++
T Consensus 33 ~~~~Pdf~l~d~~G~~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~--~~vv~vs~d~~~~~~~~~~~~ 110 (176)
T d1jfua_ 33 PLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPN--FEVVAINIDTRDPEKPKTFLK 110 (176)
T ss_dssp CCBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTT--EEEEEEECCCSCTTHHHHHHH
T ss_pred CCcCCCeEEECCCcCEEeHHHhCCCEEEEEeccCcccchHHHHHhhhhccccccccc--cccccccccccchhhhhhhHh
Confidence 456999955 99999999999999999999999999999999999999999999887 9999999985 5677888888
Q ss_pred CCCCccccCCc----hhHHHHHHHcCcccCCeEEEECCCCCccccc
Q 011791 161 SMPWLALPFKD----KSREKLARYFELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 161 ~~~~~~~~~~~----~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 202 (477)
+..+...+... .....+...+++.++|+++|||++|+|+.+.
T Consensus 111 ~~~~~~~~~~~d~~~~~~~~~~~~~~v~~~P~~~lID~~G~I~~~~ 156 (176)
T d1jfua_ 111 EANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATI 156 (176)
T ss_dssp HTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEE
T ss_pred hhCCcceeeeecchhHHHHHHhhhccCCCCCeEEEEcCCCEEEEEE
Confidence 65533322222 2224455677889999999999999998765
|
| >d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Bacterioferritin comigratory protein species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=99.76 E-value=4.2e-19 Score=154.67 Aligned_cols=139 Identities=20% Similarity=0.290 Sum_probs=114.7
Q ss_pred ccCCCccee-ccCCCceecccC--CCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHH
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDL--AGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 318 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~--~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~ 318 (477)
+...|+|.+ +.+|+.++|+++ +||++||.|| ++||++|..+++.++++++++++. ++.+++|+.| +.+..+++
T Consensus 5 G~~aPdF~L~~~~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~~~vv~is~d-~~~~~~~~ 81 (160)
T d2cx4a1 5 GEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKA--NAEVLAISVD-SPWCLKKF 81 (160)
T ss_dssp TSBCCCCEECCTTSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTT--CCEEEEEESS-CHHHHHHH
T ss_pred CCCCcCeEeECCCCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhccccccccc--cccccccccc-chhhhhhh
Confidence 556799999 999999999997 7999999998 899999999999999999999876 6899999988 56777787
Q ss_pred HhcCCCceeccCcchhHHHHHhcCCC----------CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHH
Q 011791 319 FKGMPWLALPFGDARKASLSRKFKVS----------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQ 388 (477)
Q Consensus 319 ~~~~~~~~~p~~~d~~~~l~~~~~v~----------~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~ 388 (477)
...++ +.++++.|.+..+.+.||+. ..|+++|||++|+|+.++. +.+ +....++++++++
T Consensus 82 ~~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~~~-------~~~--~~~~~~~~eil~~ 151 (160)
T d2cx4a1 82 KDENR-LAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWV-------TDN--PLNEPDYDEVVRE 151 (160)
T ss_dssp HHHHT-CSSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEE-------CSS--TTCCCCHHHHHHH
T ss_pred cccce-eeEEEeecCCcchHHHcCccccccccccccceeeEEEEcCCCEEEEEEE-------eCC--CCCCCCHHHHHHH
Confidence 77765 56788888888999999983 4689999999999998843 211 2334456778888
Q ss_pred HHHHHc
Q 011791 389 YNEMAK 394 (477)
Q Consensus 389 ~~~~~~ 394 (477)
+++++.
T Consensus 152 l~~l~~ 157 (160)
T d2cx4a1 152 ANKIAG 157 (160)
T ss_dssp HHHHHT
T ss_pred HHHHcc
Confidence 887764
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Probab=99.75 E-value=3.9e-19 Score=151.89 Aligned_cols=118 Identities=16% Similarity=0.197 Sum_probs=96.0
Q ss_pred ccCcCCCcee-c--CCCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC-----CHH
Q 011791 82 LTSHSRDFVI-S--SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-----EEE 153 (477)
Q Consensus 82 ~g~~~p~fl~-~--~~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~-----~~~ 153 (477)
+|.++|+|.. + .+|+.++++.++||+++|+||++||++|+.++|.|+++|+++++. +.+|+|+++. +.+
T Consensus 3 ~g~~aP~~~~~~~~~ng~~~~~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~---~~~i~v~~~~~~~~~~~~ 79 (143)
T d2b5xa1 3 LRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ---LNVVAVHMPRSEDDLDPG 79 (143)
T ss_dssp TTCBCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEECCCSTTTSSHH
T ss_pred CCCcCCCCcCCccCcCCeEecHHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhcc---ccceeEEeeccccccchh
Confidence 5889999953 3 489999999999999999999999999999999999999999874 7889998753 344
Q ss_pred HHHHhhcCCCCccccCCchhHHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 154 SFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
.+++++++.++ .+|...+....+.+.|++.++|++++||++|++++...
T Consensus 80 ~~~~~~~~~~~-~~p~~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~ 128 (143)
T d2b5xa1 80 KIKETAAEHDI-TQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQA 128 (143)
T ss_dssp HHHHHHHHTTC-CSCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEE
T ss_pred hhhhHHHhhcc-CccccccCccchHHHcCCCcCCEEEEECCCCEEEEEEE
Confidence 56777775542 33333344557899999999999999999999988754
|
| >d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.75 E-value=4.4e-19 Score=151.75 Aligned_cols=105 Identities=16% Similarity=0.165 Sum_probs=86.5
Q ss_pred CCCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchh
Q 011791 94 DGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKS 173 (477)
Q Consensus 94 ~g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (477)
++..+++++++||+++|+|||+||++|+.++|.+.++++.+ + +++++|+.+.+....+++...+.+.......+.
T Consensus 20 ~~~~~~~~~~kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~---~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~ 94 (144)
T d1knga_ 20 QVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDK---R--FQLVGINYKDAADNARRFLGRYGNPFGRVGVDA 94 (144)
T ss_dssp ECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTCT---T--SEEEEEEESCCHHHHHHHHHHHCCCCSEEEEET
T ss_pred cCCccCHHHhCCCEEEEEeeccccccccccCchhhhhhhcc---C--ceeEEEEeeechHHHHHHHHHcCCccccccccc
Confidence 44778999999999999999999999999999988876544 3 788999999888888888776543333333344
Q ss_pred HHHHHHHcCcccCCeEEEECCCCCccccch
Q 011791 174 REKLARYFELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 174 ~~~l~~~~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
...+.+.|++.++|+++|||++|+++++..
T Consensus 95 ~~~~~~~~~v~~~P~~~liD~~G~i~~~~~ 124 (144)
T d1knga_ 95 NGRASIEWGVYGVPETFVVGREGTIVYKLV 124 (144)
T ss_dssp TSHHHHHTTCCSSCEEEEECTTSBEEEEEE
T ss_pred cchhhhhcCccccceEEEEcCCCeEEEEEe
Confidence 566899999999999999999999998764
|
| >d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.74 E-value=4.2e-18 Score=149.65 Aligned_cols=137 Identities=13% Similarity=0.155 Sum_probs=108.7
Q ss_pred ccCCCccee-ccCC---------------CceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEE
Q 011791 243 VSGDLDFVV-GKNG---------------GKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVF 305 (477)
Q Consensus 243 ~~~~p~f~l-~~~g---------------~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~ 305 (477)
+...|+|.+ +..| +.+++++++||++||+|| +.|||+|..+++.+.+++++|+++ ++++++
T Consensus 6 Gd~aPdF~l~~~~g~~~~~~~~~~~~~~~~~~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~--g~~vv~ 83 (169)
T d2bmxa1 6 GDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDR--DAQILG 83 (169)
T ss_dssp TCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTT--TEEEEE
T ss_pred CCCCCCCEEeeccCCcccccccccccccccEeeHHHHCCCeEEEEEecCCCCcccccccccccccccccccc--Ccceee
Confidence 455688888 6666 678999999999999999 899999999999999999999987 799999
Q ss_pred EeCCCChhHHHHHHhcC---CCceeccCcchhHHHHHhcCC-----CCcceEEEECCCCcEEEeccchhhhhcCCCCCCC
Q 011791 306 ISSDRDQTSFDEFFKGM---PWLALPFGDARKASLSRKFKV-----SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPF 377 (477)
Q Consensus 306 i~~d~~~~~~~~~~~~~---~~~~~p~~~d~~~~l~~~~~v-----~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~ 377 (477)
|++|. ....+++.+.+ ..+.+|++.|.+..+++.||| ...|+++|||++|+|++... +.. +
T Consensus 84 is~d~-~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~ygv~~~~~~~~r~~fvID~~G~I~~~~~-------~~~--~- 152 (169)
T d2bmxa1 84 VSIDS-EFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFVSA-------TAG--S- 152 (169)
T ss_dssp EESSC-HHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEEEE-------ECT--T-
T ss_pred ccccc-hhhhhhhcccccccccceEEEEeccHHHHHHHcCCCccCCccceeEEEEcCCCEEEEEEE-------cCC--C-
Confidence 99994 44455555544 347788999999999999998 67899999999999988742 111 1
Q ss_pred CHHHHHHHHHHHHHH
Q 011791 378 TEERMKEIDGQYNEM 392 (477)
Q Consensus 378 ~~~~~~~l~~~~~~~ 392 (477)
.+++++++++.|+.+
T Consensus 153 ~~~~~~evl~~l~al 167 (169)
T d2bmxa1 153 VGRNVDEVLRVLDAL 167 (169)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh
Confidence 123456677776653
|
| >d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Amphibacillus xylanus [TaxId: 1449]
Probab=99.74 E-value=7.9e-18 Score=147.05 Aligned_cols=119 Identities=21% Similarity=0.262 Sum_probs=101.6
Q ss_pred hhccCCCccee-c----cCCCceecccCCCCEEEEEEeCC-CChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhH
Q 011791 241 VLVSGDLDFVV-G----KNGGKVPVSDLAGKTILLYFSAH-WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTS 314 (477)
Q Consensus 241 ~~~~~~p~f~l-~----~~g~~~~l~~~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~ 314 (477)
+++...|+|.+ + .+++++++++++||++||+||.. ||++|..+++.|++++++|+++ +++|++||.| +.+.
T Consensus 2 lvG~~aP~F~l~~~~~g~~~~~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~--g~~vv~IS~D-~~~~ 78 (166)
T d1we0a1 2 LIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL--GVEVYSVSTD-THFV 78 (166)
T ss_dssp CTTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHT--TEEEEEEESS-CHHH
T ss_pred CCCCcCCCCEEeeecCCcceeEeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhccc--ceEEEecccc-cHHH
Confidence 56778899998 4 33457999999999999999965 9999999999999999999987 7999999999 5566
Q ss_pred HHHHHhcCC---CceeccCcchhHHHHHhcCCC------CcceEEEECCCCcEEEec
Q 011791 315 FDEFFKGMP---WLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 315 ~~~~~~~~~---~~~~p~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~iv~~~ 362 (477)
.++|.+++. -+.||++.|.+..+++.||+. ..|++||||++|+|+...
T Consensus 79 ~~~~~~~~~~~~~~~fpll~D~~~~v~~~ygv~~~~~~~~~r~tfvID~~G~I~~~~ 135 (166)
T d1we0a1 79 HKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIE 135 (166)
T ss_dssp HHHHHHSCHHHHTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHhhhhhhhcccccccccCcccHHHHHhCCCccccCcccceEEEECCCCcEEEEE
Confidence 677776552 377999999999999999984 567899999999998874
|
| >d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Crithidia fasciculata [TaxId: 5656]
Probab=99.73 E-value=3.4e-18 Score=149.93 Aligned_cols=118 Identities=21% Similarity=0.268 Sum_probs=99.9
Q ss_pred hccCCCcce----e-ccCCCceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHH
Q 011791 242 LVSGDLDFV----V-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSF 315 (477)
Q Consensus 242 ~~~~~p~f~----l-~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~ 315 (477)
++...|+|. + |.+|++++|++++||++||+|| ++||++|..+++.|++++++|+++ +++|++|+.|. ....
T Consensus 5 vG~~APdF~~~~~l~d~~g~~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~--~~~v~~is~d~-~~~~ 81 (167)
T d1e2ya_ 5 LNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEI--NTEVISCSCDS-EYSH 81 (167)
T ss_dssp TTSBCCCCEEEEECSSSCEEEEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTT--TEEEEEEESSC-HHHH
T ss_pred CCCCCCCCcccccccCCCCcEEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhcC--ceEEEeecCCc-HHhH
Confidence 466789997 5 7899999999999999999999 999999999999999999999986 79999999984 4555
Q ss_pred HHHHhcCC------CceeccCcchhHHHHHhcCCC------CcceEEEECCCCcEEEec
Q 011791 316 DEFFKGMP------WLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 316 ~~~~~~~~------~~~~p~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~iv~~~ 362 (477)
.++..... -..++++.|....+.+.|++. .+|++||||++|+|+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~y~v~~~~~g~~~r~tfvID~~G~Ir~~~ 140 (167)
T d1e2ya_ 82 LQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAYRGVFIIDPNGKLRQII 140 (167)
T ss_dssp HHHHHSCGGGTCCCCCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHhhHHHhcccccccccccccchhHHHHHcCCCcccCCCceeEEEEECCCCEEEEEE
Confidence 56655432 256777888889999999983 467899999999998774
|
| >d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.71 E-value=1.3e-17 Score=149.02 Aligned_cols=117 Identities=18% Similarity=0.221 Sum_probs=101.8
Q ss_pred ccCCCcce----e-ccCCCceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHH
Q 011791 243 VSGDLDFV----V-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFD 316 (477)
Q Consensus 243 ~~~~p~f~----l-~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~ 316 (477)
..++|+|. + |.+|++++|++++||++||+|| +.||+.|..+++.+++++++|++. +++|++||.| +....+
T Consensus 6 ~~PAPdFtl~a~l~d~~g~~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~--g~~VlgIS~D-s~~s~~ 82 (194)
T d1uula_ 6 LHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI--GCEVLACSMD-SEYSHL 82 (194)
T ss_dssp TSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTT--TEEEEEEESS-CHHHHH
T ss_pred CCCCCCCcccccccCCCCcEEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhccC--ceEEEEEecC-chhhhh
Confidence 45789998 5 7788999999999999999999 899999999999999999999976 7999999999 445556
Q ss_pred HHHhcC------CCceeccCcchhHHHHHhcCC------CCcceEEEECCCCcEEEec
Q 011791 317 EFFKGM------PWLALPFGDARKASLSRKFKV------SGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 317 ~~~~~~------~~~~~p~~~d~~~~l~~~~~v------~~~Pt~~lid~~G~iv~~~ 362 (477)
+|.+.+ .-+.||++.|.+..+++.||| ...|++|+||++|+|+...
T Consensus 83 ~~~~~~~~~~~~~~l~fpllsD~~~~v~~~ygv~~~~~~~~~R~tfvID~~G~I~~~~ 140 (194)
T d1uula_ 83 AWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQIT 140 (194)
T ss_dssp HHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred hhhhhhhhhccccCCCcceeeCCcchHHHHcCCeeccCCceEEEEEEECCCCeEEEEE
Confidence 666544 247889999999999999999 3578899999999999874
|
| >d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Amphibacillus xylanus [TaxId: 1449]
Probab=99.70 E-value=2.5e-17 Score=143.84 Aligned_cols=121 Identities=19% Similarity=0.186 Sum_probs=95.2
Q ss_pred hhccCcCCCcee-----cCCCCeEecCCCCCCEEEEEEecC-CCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHH
Q 011791 80 SVLTSHSRDFVI-----SSDGRKISVSDLEGKTIGLYFSMS-SYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEE 153 (477)
Q Consensus 80 ~~~g~~~p~fl~-----~~~g~~v~ls~l~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~ 153 (477)
+++|.++|+|.+ +.+++++++++++||+++|+||.. ||++|..+++.|+++++++++.| ++||+||.|+. +
T Consensus 1 ~lvG~~aP~F~l~~~~~g~~~~~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g--~~vv~IS~D~~-~ 77 (166)
T d1we0a1 1 SLIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLG--VEVYSVSTDTH-F 77 (166)
T ss_dssp CCTTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTT--EEEEEEESSCH-H
T ss_pred CCCCCcCCCCEEeeecCCcceeEeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccc--eEEEecccccH-H
Confidence 478999999954 245678999999999999999966 99999999999999999999998 99999999953 3
Q ss_pred HHHHhhcCC---CCccccCCchhHHHHHHHcCcc------cCCeEEEECCCCCccccch
Q 011791 154 SFKRDLGSM---PWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 154 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~ 203 (477)
..+++.+++ .-+.+|...+...++++.||+. ..|+++|||++|+|++...
T Consensus 78 ~~~~~~~~~~~~~~~~fpll~D~~~~v~~~ygv~~~~~~~~~r~tfvID~~G~I~~~~i 136 (166)
T d1we0a1 78 VHKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEI 136 (166)
T ss_dssp HHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEE
T ss_pred HHHHHhhhhhhhcccccccccCcccHHHHHhCCCccccCcccceEEEECCCCcEEEEEE
Confidence 333333322 1133444445556799999983 4688999999999987653
|
| >d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Crithidia fasciculata [TaxId: 5656]
Probab=99.69 E-value=3.3e-17 Score=143.50 Aligned_cols=121 Identities=19% Similarity=0.240 Sum_probs=94.8
Q ss_pred hccCcCCCce-----ecCCCCeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHH-
Q 011791 81 VLTSHSRDFV-----ISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEE- 153 (477)
Q Consensus 81 ~~g~~~p~fl-----~~~~g~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~- 153 (477)
-+|.++|+|. .|.+|++|+|++++||+|+|+|| ++||++|..+++.|++++++|++.| ++|++||.|+...
T Consensus 4 kvG~~APdF~~~~~l~d~~g~~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~--~~v~~is~d~~~~~ 81 (167)
T d1e2ya_ 4 KLNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEIN--TEVISCSCDSEYSH 81 (167)
T ss_dssp CTTSBCCCCEEEEECSSSCEEEEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTT--EEEEEEESSCHHHH
T ss_pred cCCCCCCCCcccccccCCCCcEEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhcCc--eEEEeecCCcHHhH
Confidence 3799999993 48899999999999999999999 9999999999999999999999988 9999999986432
Q ss_pred -HHHHhhcCC-C--CccccCCchhHHHHHHHcCc------ccCCeEEEECCCCCccccch
Q 011791 154 -SFKRDLGSM-P--WLALPFKDKSREKLARYFEL------STLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 154 -~~~~~~~~~-~--~~~~~~~~~~~~~l~~~~~v------~~~P~~~lid~~G~i~~~~~ 203 (477)
.+....... . -+.++...+....+.+.|++ ..+|+++|||++|+|++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~y~v~~~~~g~~~r~tfvID~~G~Ir~~~~ 141 (167)
T d1e2ya_ 82 LQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAYRGVFIIDPNGKLRQIII 141 (167)
T ss_dssp HHHHHSCGGGTCCCCCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEE
T ss_pred HHHHhhHHHhcccccccccccccchhHHHHHcCCCcccCCCceeEEEEECCCCEEEEEEE
Confidence 232222211 1 12334444555678889988 24689999999999977653
|
| >d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin-3 (AOP-1, SP-22) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.69 E-value=5.7e-17 Score=140.45 Aligned_cols=115 Identities=18% Similarity=0.244 Sum_probs=99.9
Q ss_pred CCCccee----ccCCCceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHH
Q 011791 245 GDLDFVV----GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 319 (477)
Q Consensus 245 ~~p~f~l----~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~ 319 (477)
.+|+|.+ +.+|++++|++++||+|||+|| +.||++|..+++.+++++++|.+. +.+|++||.| +....++|.
T Consensus 2 ~AP~F~l~~~~~~~~~~vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~--~~~vigIS~d-~~~~~~~~~ 78 (158)
T d1zyea1 2 HAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDV--NCEVVAVSVD-SHFSHLAWI 78 (158)
T ss_dssp BCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHT--TEEEEEEESS-CHHHHHHHH
T ss_pred CCCCCccceeeCCCccEEeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhcC--CceEEeccCc-CHHHHHHHH
Confidence 3689975 4466799999999999999999 899999999999999999999987 7999999999 456677787
Q ss_pred hcC------CCceeccCcchhHHHHHhcCCC------CcceEEEECCCCcEEEec
Q 011791 320 KGM------PWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 320 ~~~------~~~~~p~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~iv~~~ 362 (477)
... ..+.+|++.|....+.+.||+. +.|++++||++|+|++..
T Consensus 79 ~~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~~g~~~R~tfvID~~G~I~~~~ 133 (158)
T d1zyea1 79 NTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLS 133 (158)
T ss_dssp TSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred hhhHhhccccccccccccccccHHHHHHHhccccCCccccEEEEECCCCEEEEEE
Confidence 754 3578999999999999999985 467899999999999864
|
| >d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin reductase TsaA species: Helicobacter pylori [TaxId: 210]
Probab=99.69 E-value=6.1e-17 Score=141.94 Aligned_cols=138 Identities=16% Similarity=0.191 Sum_probs=109.5
Q ss_pred hccCCCccee-ccCC-----CceecccCCCC-EEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChh
Q 011791 242 LVSGDLDFVV-GKNG-----GKVPVSDLAGK-TILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 313 (477)
Q Consensus 242 ~~~~~p~f~l-~~~g-----~~~~l~~~~gk-~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~ 313 (477)
++..+|||.+ +.+| +.++|+++.|| ++||+|| +.|||.|..+++.+++.++++++. +++|++|+.|. ..
T Consensus 3 VG~~APdF~l~~~~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~--g~~Vvgis~d~-~~ 79 (170)
T d1zofa1 3 VTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEK--GFNVIGVSIDS-EQ 79 (170)
T ss_dssp TTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHT--TEEEEEEESSC-HH
T ss_pred CCCcCCCcCcccccCCCccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccC--CeeEecccccc-hh
Confidence 4667899999 7776 46999999986 8999999 899999999999999999999987 79999999994 44
Q ss_pred HHHHHHhcC------CCceeccCcchhHHHHHhcCCC-----CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHH
Q 011791 314 SFDEFFKGM------PWLALPFGDARKASLSRKFKVS-----GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERM 382 (477)
Q Consensus 314 ~~~~~~~~~------~~~~~p~~~d~~~~l~~~~~v~-----~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~ 382 (477)
.-++|.+.. ..+.+|++.|....+.+.||+. ..|++++||++|+|+.... +.. + ..++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~~ygv~~~~~~~~r~tfvID~~G~I~~~~~-------~~~--~-~~~~~ 149 (170)
T d1zofa1 80 VHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVI-------NDL--P-LGRNA 149 (170)
T ss_dssp HHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETTTEECEEEEEEETTTEEEEEEE-------ESS--S-CCCHH
T ss_pred hHHHHHhhhhhcccccCcccccccccccHHHHHcCCCccccceeEEEEEEcCCCeEEEEEE-------eCC--C-CCCCH
Confidence 555555543 2467888889999999999984 5789999999999987632 111 1 23456
Q ss_pred HHHHHHHHHH
Q 011791 383 KEIDGQYNEM 392 (477)
Q Consensus 383 ~~l~~~~~~~ 392 (477)
+++++.++.+
T Consensus 150 ~eiL~~l~aL 159 (170)
T d1zofa1 150 DEMLRMVDAL 159 (170)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777777654
|
| >d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Putative peroxiredoxin Rv2238c/MT2298 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.68 E-value=7.8e-17 Score=138.98 Aligned_cols=116 Identities=17% Similarity=0.231 Sum_probs=94.9
Q ss_pred ccCCCccee-ccCCCceecccCCCC-EEEE-EEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHH
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGK-TILL-YFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 319 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk-~vll-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~ 319 (477)
+...|+|.+ +.+|+++++++++|| +++| +||++|||+|..+++.+++++++++.+ +++|++|+.| +....++|.
T Consensus 5 G~~aPdF~l~d~~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~--~~~vi~vs~d-~~~~~~~~~ 81 (153)
T d1xvwa1 5 GATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEND--DSAALAISVG-PPPTHKIWA 81 (153)
T ss_dssp TSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSS--SEEEEEEESC-CHHHHHHHH
T ss_pred cCCCcCeEEECCCCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhccc--ccccccccch-hhhHHHHHh
Confidence 556799999 999999999999995 5555 455899999999999999999999765 7999999998 567888898
Q ss_pred hcCCCceeccCc--chhHHHHHhcCCC------CcceEEEECCCCcEEEec
Q 011791 320 KGMPWLALPFGD--ARKASLSRKFKVS------GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 320 ~~~~~~~~p~~~--d~~~~l~~~~~v~------~~Pt~~lid~~G~iv~~~ 362 (477)
+.++ +.+|+.. +....+.+.||+. ..|++++||++|+|++.+
T Consensus 82 ~~~~-~~~~~l~~~~~~~~~~~~ygv~~~~~g~~~r~tfvID~~G~I~~~~ 131 (153)
T d1xvwa1 82 TQSG-FTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAE 131 (153)
T ss_dssp HHHT-CCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEE
T ss_pred hhhc-cceeEEecccccchhHHHhhhhhhccCceeeeEEEECCCCEEEEEE
Confidence 8776 4455443 3467899999974 346799999999998764
|
| >d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin dot5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.67 E-value=2.9e-17 Score=142.12 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=98.7
Q ss_pred hccCCCccee-ccCCCceecccC--CCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHH
Q 011791 242 LVSGDLDFVV-GKNGGKVPVSDL--AGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDE 317 (477)
Q Consensus 242 ~~~~~p~f~l-~~~g~~~~l~~~--~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~ 317 (477)
++...|+|.| +.+|+.++|+++ +|++|+++|| ++||++|..+++.|++.+++|++. ..+++|+.| +.+..++
T Consensus 7 vG~~aP~f~L~~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~---~~~~~is~d-~~~~~~~ 82 (156)
T d2a4va1 7 IGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEY---AAVFGLSAD-SVTSQKK 82 (156)
T ss_dssp TTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT---CEEEEEESC-CHHHHHH
T ss_pred CCCCCCCeEEECCCCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhhc---cceeeeccc-hhhhHHh
Confidence 4666799999 999999999998 4678888888 899999999999999999999764 678999988 6788899
Q ss_pred HHhcCCCceeccCcchhHHHHHhcCCCCcce-----EEEECCCCcEEEec
Q 011791 318 FFKGMPWLALPFGDARKASLSRKFKVSGIPM-----LVAIGPSGRTITKE 362 (477)
Q Consensus 318 ~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt-----~~lid~~G~iv~~~ 362 (477)
|.++++ +.||++.|.+..+++.||+...|. .++|+.+|+++.++
T Consensus 83 f~~~~~-l~f~~L~D~~~~v~~~ygv~~~~~~~~~r~~~i~~dg~i~~~~ 131 (156)
T d2a4va1 83 FQSKQN-LPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIFVDGKLKFKR 131 (156)
T ss_dssp HHHHHT-CSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEEETTEEEEEE
T ss_pred hhcccC-ccceeccchHHHHHHHcCCCccccCCeeEEEEEEECCeEEEEE
Confidence 999888 679999999999999999865552 44444799998874
|
| >d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.67 E-value=6.9e-17 Score=141.71 Aligned_cols=120 Identities=12% Similarity=0.189 Sum_probs=96.5
Q ss_pred ccCcCCCcee-cCCC---------------CeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEE
Q 011791 82 LTSHSRDFVI-SSDG---------------RKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIV 144 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g---------------~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv 144 (477)
+|.++|+|.+ +..| +.+++++++||+++|+|| +.|||+|..+++.+.++++++++.| ++++
T Consensus 5 vGd~aPdF~l~~~~g~~~~~~~~~~~~~~~~~~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g--~~vv 82 (169)
T d2bmxa1 5 IGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRD--AQIL 82 (169)
T ss_dssp TTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTT--EEEE
T ss_pred CCCCCCCCEEeeccCCcccccccccccccccEeeHHHHCCCeEEEEEecCCCCccccccccccccccccccccC--ccee
Confidence 6889999954 4444 789999999999999998 9999999999999999999999998 9999
Q ss_pred EEEcCCCH--HHHHHhhcCCCCccccCCchhHHHHHHHcCc-----ccCCeEEEECCCCCccccch
Q 011791 145 LISLDDEE--ESFKRDLGSMPWLALPFKDKSREKLARYFEL-----STLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 145 ~is~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v-----~~~P~~~lid~~G~i~~~~~ 203 (477)
+||.|... ..|.+.......+.+|...+...++++.||| ...|+++|||++|+|++...
T Consensus 83 ~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~ygv~~~~~~~~r~~fvID~~G~I~~~~~ 148 (169)
T d2bmxa1 83 GVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFVSA 148 (169)
T ss_dssp EEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEEEE
T ss_pred eccccchhhhhhhcccccccccceEEEEeccHHHHHHHcCCCccCCccceeEEEEcCCCEEEEEEE
Confidence 99999743 3444444432234444545566678999998 67899999999999987653
|
| >d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Bacterioferritin comigratory protein species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=99.66 E-value=3.6e-17 Score=142.20 Aligned_cols=116 Identities=16% Similarity=0.258 Sum_probs=94.4
Q ss_pred ccCcCCCcee-cCCCCeEecCCC--CCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHH
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDL--EGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKR 157 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l--~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~ 157 (477)
+|.++|+|.+ +.+|+.++++++ +||+++|+|| ++||++|..+++.++++++++++.+ +.+++|+.| +.+..++
T Consensus 4 vG~~aPdF~L~~~~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vv~is~d-~~~~~~~ 80 (160)
T d2cx4a1 4 LGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKAN--AEVLAISVD-SPWCLKK 80 (160)
T ss_dssp TTSBCCCCEECCTTSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTC--CEEEEEESS-CHHHHHH
T ss_pred CCCCCcCeEeECCCCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhcccccccccc--ccccccccc-chhhhhh
Confidence 5899999955 999999999997 7999999888 8999999999999999999999888 899999988 4455555
Q ss_pred hhc--CCCCccccCCchhHHHHHHHcCc----------ccCCeEEEECCCCCccccch
Q 011791 158 DLG--SMPWLALPFKDKSREKLARYFEL----------STLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 158 ~~~--~~~~~~~~~~~~~~~~l~~~~~v----------~~~P~~~lid~~G~i~~~~~ 203 (477)
+.. .++|..+. +....+++.||+ ...|+++|||++|+|++...
T Consensus 81 ~~~~~~~~~~~l~---D~~~~~~~~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~~~ 135 (160)
T d2cx4a1 81 FKDENRLAFNLLS---DYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWV 135 (160)
T ss_dssp HHHHHTCSSEEEE---CTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEE
T ss_pred hcccceeeEEEee---cCCcchHHHcCccccccccccccceeeEEEEcCCCEEEEEEE
Confidence 544 34444333 334568889987 34789999999999998764
|
| >d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Salmonella typhimurium [TaxId: 90371]
Probab=99.65 E-value=1.8e-16 Score=140.28 Aligned_cols=119 Identities=18% Similarity=0.254 Sum_probs=101.5
Q ss_pred hhccCCCccee-c-cCC--CceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHH
Q 011791 241 VLVSGDLDFVV-G-KNG--GKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSF 315 (477)
Q Consensus 241 ~~~~~~p~f~l-~-~~g--~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~ 315 (477)
+++...|+|.+ . .+| .++++++++||++||+|| +.||+.|..+++.|++.+++|++. +++|++||+| +....
T Consensus 2 lIg~~aP~F~~~a~~~g~~~~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~--~~~v~gIS~D-s~~sh 78 (186)
T d1n8ja_ 2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKL--GVDVYSVSTD-THFTH 78 (186)
T ss_dssp CTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHT--TEEEEEEESS-CHHHH
T ss_pred CCCCcCCCCEeeeeeCCeeEEEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccc--cEEEEecccc-CHHHH
Confidence 56778899997 3 355 478999999999999999 789999999999999999999987 7999999998 55666
Q ss_pred HHHHhcCC---CceeccCcchhHHHHHhcCCC------CcceEEEECCCCcEEEec
Q 011791 316 DEFFKGMP---WLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 316 ~~~~~~~~---~~~~p~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~iv~~~ 362 (477)
++|.+... .+.||++.|.+..+++.||+. ..|++|+||++|+|+...
T Consensus 79 ~~f~~~~~~~~~~~fpllsD~~~~v~~~yGv~~~~~g~~~r~tfiID~~G~Ir~~~ 134 (186)
T d1n8ja_ 79 KAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIE 134 (186)
T ss_dssp HHHHHHCTTGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHhccccccccccccccccHHHHHHHHhCCCcccCCcceeeEEEECchheEEEEe
Confidence 67776553 578999999999999999984 457899999999998764
|
| >d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin species: Aeropyrum pernix [TaxId: 56636]
Probab=99.64 E-value=5.8e-16 Score=141.66 Aligned_cols=139 Identities=14% Similarity=0.238 Sum_probs=108.2
Q ss_pred hhccCCCccee-ccCCCceecccC---CCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCC--hh
Q 011791 241 VLVSGDLDFVV-GKNGGKVPVSDL---AGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD--QT 313 (477)
Q Consensus 241 ~~~~~~p~f~l-~~~g~~~~l~~~---~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~--~~ 313 (477)
+++...|+|.+ +.+| ++.++++ +||++||+|| +.||+.|..+++.+++++++|+++ +++|++||+|.. ..
T Consensus 2 lIGd~aPdF~l~t~~G-~i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~--g~~vigiS~Ds~~sh~ 78 (237)
T d2zcta1 2 LIGERFPEMEVTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRL--GVDLIGLSVDSVFSHI 78 (237)
T ss_dssp CTTSBCCCEEEEETTE-EEEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHT--TEEEEEEESSCHHHHH
T ss_pred CCCCCCCCeEEEcCCC-CEEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccC--CcceeeccCCcHHHHH
Confidence 45677899999 7777 4666654 7999999999 999999999999999999999987 799999999963 23
Q ss_pred HHHHHHhc--CCCceeccCcchhHHHHHhcCC-------CCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHH
Q 011791 314 SFDEFFKG--MPWLALPFGDARKASLSRKFKV-------SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKE 384 (477)
Q Consensus 314 ~~~~~~~~--~~~~~~p~~~d~~~~l~~~~~v-------~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~ 384 (477)
.|.+..+. ...+.||++.|.+..+++.||+ ...|++||||++|+|+.... +... ..+++++
T Consensus 79 ~w~~~~~~~~~~~l~fpllsD~~~~vak~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~------~~~~----~gR~~dE 148 (237)
T d2zcta1 79 KWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLY------YPME----LGRLVDE 148 (237)
T ss_dssp HHHHHHHHHHCCCCCSCEEECGGGHHHHHTTCC----CCTTCCEEEEECTTSBEEEEEE------CCTT----BCCCHHH
T ss_pred HHhhhhhhhcccccccccccCcchHHHHHcCCccccccccceeeeEEECCCCEEEEEEE------eCCC----CCCCHHH
Confidence 44444432 3458899999999999999998 46899999999999987632 1111 2334567
Q ss_pred HHHHHHHH
Q 011791 385 IDGQYNEM 392 (477)
Q Consensus 385 l~~~~~~~ 392 (477)
+++.|+.+
T Consensus 149 iLr~l~aL 156 (237)
T d2zcta1 149 ILRIVKAL 156 (237)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
|
| >d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.63 E-value=4.4e-16 Score=126.57 Aligned_cols=73 Identities=25% Similarity=0.622 Sum_probs=64.3
Q ss_pred cCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhc
Q 011791 262 DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 341 (477)
Q Consensus 262 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 341 (477)
+..||+|||+|||+||++|+.+.|.++++++++++. +.++.|++|... .+++.|
T Consensus 22 ~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~---~~~~~i~~d~~~-----------------------~l~~~~ 75 (111)
T d1xwaa_ 22 KASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDVDECE-----------------------DIAMEY 75 (111)
T ss_dssp HHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTCH-----------------------HHHHHT
T ss_pred hcCCCEEEEEEECCcccCccccchhHHHHhhhcccc---eEEEEEEeecCc-----------------------chhhcC
Confidence 335899999999999999999999999999999865 777778777554 588999
Q ss_pred CCCCcceEEEECCCCcEEEe
Q 011791 342 KVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 342 ~v~~~Pt~~lid~~G~iv~~ 361 (477)
+|+++||++++ ++|+.+.+
T Consensus 76 ~V~~~Pt~~~~-~~G~~v~~ 94 (111)
T d1xwaa_ 76 NISSMPTFVFL-KNGVKVEE 94 (111)
T ss_dssp TCCSSSEEEEE-ETTEEEEE
T ss_pred CCccccEEEEE-ECCEEEEE
Confidence 99999999999 79999887
|
| >d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Putative peroxiredoxin Rv2238c/MT2298 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.62 E-value=3e-16 Score=135.22 Aligned_cols=118 Identities=8% Similarity=0.131 Sum_probs=91.7
Q ss_pred ccCcCCCcee-cCCCCeEecCCCCCC--EEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHh
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDLEGK--TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 158 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l~gk--~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~ 158 (477)
+|.++|+|.+ +.+|+++++++++|| +|+++||++|||+|..+++.|.++++++++.| ++|++||.|. .+..+++
T Consensus 4 vG~~aPdF~l~d~~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~--~~vi~vs~d~-~~~~~~~ 80 (153)
T d1xvwa1 4 VGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDD--SAALAISVGP-PPTHKIW 80 (153)
T ss_dssp TTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSS--EEEEEEESCC-HHHHHHH
T ss_pred CcCCCcCeEEECCCCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhcccc--cccccccchh-hhHHHHH
Confidence 5899999965 999999999999996 45555679999999999999999999998887 9999999984 4555556
Q ss_pred hcC--CCCccccCCchhHHHHHHHcCcc------cCCeEEEECCCCCccccch
Q 011791 159 LGS--MPWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 159 ~~~--~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~ 203 (477)
.+. +++..+.. .+....+.+.||+. ..|+++|||++|+|.+...
T Consensus 81 ~~~~~~~~~~l~~-~~~~~~~~~~ygv~~~~~g~~~r~tfvID~~G~I~~~~~ 132 (153)
T d1xvwa1 81 ATQSGFTFPLLSD-FWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEM 132 (153)
T ss_dssp HHHHTCCSCEEEC-TTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEE
T ss_pred hhhhccceeEEec-ccccchhHHHhhhhhhccCceeeeEEEECCCCEEEEEEE
Confidence 553 34433322 22345688899873 3468999999999987653
|
| >d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.62 E-value=4.6e-16 Score=136.81 Aligned_cols=119 Identities=20% Similarity=0.321 Sum_probs=92.0
Q ss_pred ccCCCccee-ccCCCceecccCCCCEEEEEEeCCCCh-hhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC---ChhHHHH
Q 011791 243 VSGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCP-PCRAFLPKLIDAYKKIKERNESLEVVFISSDR---DQTSFDE 317 (477)
Q Consensus 243 ~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~---~~~~~~~ 317 (477)
..+.|+|.+ +.+|+.+++++++||++||+||++||+ .|...++.|.++++++++.+.++.+++|++|. +.+.+++
T Consensus 8 ~~~~p~F~l~d~~G~~vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~Dtp~~l~~ 87 (172)
T d1xzoa1 8 NYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKK 87 (172)
T ss_dssp CEECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHH
T ss_pred CCcCCCeEEEcCCCCEEcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccccccchHHHHHH
Confidence 345699999 999999999999999999999999997 79999999999999998766689999999984 4567889
Q ss_pred HHhcCCC--ceeccCcchhH-----HHHHhcCCC-C----------cceEEEECCCCcEEEe
Q 011791 318 FFKGMPW--LALPFGDARKA-----SLSRKFKVS-G----------IPMLVAIGPSGRTITK 361 (477)
Q Consensus 318 ~~~~~~~--~~~p~~~d~~~-----~l~~~~~v~-~----------~Pt~~lid~~G~iv~~ 361 (477)
|.+.++. .++.++.+... ...+.|++. . .|.++|||++|+|+..
T Consensus 88 y~~~~~~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~ 149 (172)
T d1xzoa1 88 FAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKD 149 (172)
T ss_dssp HHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEE
T ss_pred HHHHhccccccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEE
Confidence 9887652 22333332111 123344432 2 2679999999999876
|
| >d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.61 E-value=5.1e-16 Score=138.43 Aligned_cols=119 Identities=15% Similarity=0.228 Sum_probs=97.2
Q ss_pred ccCcCCCce----e-cCCCCeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCH--H
Q 011791 82 LTSHSRDFV----I-SSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE--E 153 (477)
Q Consensus 82 ~g~~~p~fl----~-~~~g~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~--~ 153 (477)
.+.|+|||. + |.+|+++++++++||+|+|+|| +.||++|..+++.++++++++++.| ++|++||.|+.. .
T Consensus 5 ~~~PAPdFtl~a~l~d~~g~~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g--~~VlgIS~Ds~~s~~ 82 (194)
T d1uula_ 5 DLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIG--CEVLACSMDSEYSHL 82 (194)
T ss_dssp TTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCHHHHH
T ss_pred cCCCCCCCcccccccCCCCcEEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCc--eEEEEEecCchhhhh
Confidence 467999994 3 7889999999999999999999 9999999999999999999999988 999999999632 3
Q ss_pred HHHHhhc---CCCCccccCCchhHHHHHHHcCc------ccCCeEEEECCCCCccccc
Q 011791 154 SFKRDLG---SMPWLALPFKDKSREKLARYFEL------STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 154 ~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~v------~~~P~~~lid~~G~i~~~~ 202 (477)
.|.+..+ ...-+.+|...+...++++.||+ ...|+++|||++|+|.+..
T Consensus 83 ~~~~~~~~~~~~~~l~fpllsD~~~~v~~~ygv~~~~~~~~~R~tfvID~~G~I~~~~ 140 (194)
T d1uula_ 83 AWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQIT 140 (194)
T ss_dssp HHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred hhhhhhhhhccccCCCcceeeCCcchHHHHcCCeeccCCceEEEEEEECCCCeEEEEE
Confidence 3433332 12235556666677789999998 3478999999999998764
|
| >d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
Probab=99.60 E-value=1.1e-15 Score=122.78 Aligned_cols=71 Identities=25% Similarity=0.577 Sum_probs=63.8
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+|+++|+|||+||++|+.+.|.+.+++++++++ +.++.|++|... .+++.|+|
T Consensus 16 ~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~V 69 (105)
T d1nw2a_ 16 GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVDENP-----------------------ETTSQFGI 69 (105)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCcEEEEEECCCCCCcccccchhhhhhhhcCCc---eEEEEEECCCCc-----------------------ccHHHCCc
Confidence 3689999999999999999999999999999865 888888887654 68999999
Q ss_pred CCcceEEEECCCCcEEEe
Q 011791 344 SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~ 361 (477)
+++||++++ ++|+.+.+
T Consensus 70 ~~~Pt~~~~-~~G~~~~~ 86 (105)
T d1nw2a_ 70 MSIPTLILF-KGGEPVKQ 86 (105)
T ss_dssp CBSSEEEEE-ETTEEEEE
T ss_pred ceeeEEEEE-ECCEEEEE
Confidence 999999999 68999887
|
| >d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=8.4e-16 Score=133.86 Aligned_cols=116 Identities=21% Similarity=0.204 Sum_probs=94.0
Q ss_pred hccCCCccee-ccCCCceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHH
Q 011791 242 LVSGDLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 319 (477)
Q Consensus 242 ~~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~ 319 (477)
.+...|+|.| +.+|++++|++++||++||+|| +.||++|..+++.|++++.+++ ++++++|+.| +....+++.
T Consensus 20 vG~~APdF~L~~~~g~~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~----~~~vv~Is~d-~~~~~~~~~ 94 (164)
T d1qxha_ 20 AGSKAQTFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEID----NTVVLCISAD-LPFAQSRFC 94 (164)
T ss_dssp TTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST----TEEEEEEESS-CHHHHTTCC
T ss_pred CCCCCCCeEEECCCCCEEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhhc----cceeeeEEcC-CHHHHHHHH
Confidence 4566799999 9999999999999999999998 6799999999999998877653 5899999998 556666666
Q ss_pred hcCCCceec--cCcchhHHHHHhcCCC---------CcceEEEECCCCcEEEecc
Q 011791 320 KGMPWLALP--FGDARKASLSRKFKVS---------GIPMLVAIGPSGRTITKEA 363 (477)
Q Consensus 320 ~~~~~~~~p--~~~d~~~~l~~~~~v~---------~~Pt~~lid~~G~iv~~~~ 363 (477)
..++ +.++ ...+++..+.+.||+. ..|++|+||++|+|++.+.
T Consensus 95 ~~~~-~~~~~~~~~d~~~~~~~~ygv~~~~~~~~g~~~ra~fvID~~G~I~y~~~ 148 (164)
T d1qxha_ 95 GAEG-LNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDENDNVIFSQL 148 (164)
T ss_dssp SSTT-CTTEEEEECTTCHHHHHHTTCBBCSSTTTTSBCCEEEEECTTSBEEEEEE
T ss_pred HHhC-CCcceeeccccchhhHHhcCeEeecCcccCcccCEEEEEcCCCEEEEEEE
Confidence 6665 3333 3356678899999973 2378999999999998753
|
| >d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.60 E-value=3e-15 Score=120.67 Aligned_cols=70 Identities=23% Similarity=0.577 Sum_probs=62.8
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+|+|||+|||+||++|+++.|.+.++.+++..+ +.++.|++|... .+++.|+|+
T Consensus 19 ~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~d~~~-----------------------~l~~~~~V~ 72 (107)
T d1dbya_ 19 SVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK---LKCVKLNTDESP-----------------------NVASEYGIR 72 (107)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-----------------------HHHHHHTCC
T ss_pred CCcEEEEEECCCCCCccccChHHHHHHHhhccc---ceEEEEecccch-----------------------hHHHHhccc
Confidence 789999999999999999999999998888764 788888888654 689999999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++||++++ ++|+.+.+
T Consensus 73 ~~Pt~~~~-~~G~~v~~ 88 (107)
T d1dbya_ 73 SIPTIMVF-KGGKKCET 88 (107)
T ss_dssp SSCEEEEE-SSSSEEEE
T ss_pred ceEEEEEE-ECCeEEEE
Confidence 99999999 68999887
|
| >d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.59 E-value=2.3e-15 Score=132.22 Aligned_cols=122 Identities=23% Similarity=0.404 Sum_probs=94.3
Q ss_pred hhccCcCCCcee-cCCCCeEecCCCCCCEEEEEEecCCCc-cchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC---CHHH
Q 011791 80 SVLTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYK-ASAEFTPRLVEVYEKLKGKGESFEIVLISLDD---EEES 154 (477)
Q Consensus 80 ~~~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~---~~~~ 154 (477)
.-++.++|+|.+ +.+|+.+++++++||+++|+||++||+ +|...++.|.++++.+.+.|.++.+|+||+|. +++.
T Consensus 5 ~p~~~~~p~F~l~d~~G~~vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~Dtp~~ 84 (172)
T d1xzoa1 5 DPLNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQ 84 (172)
T ss_dssp SCCCEECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHH
T ss_pred CCCCCcCCCeEEEcCCCCEEcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccccccchHHH
Confidence 446778999954 999999999999999999999999997 79999999999999998878789999999983 4666
Q ss_pred HHHhhcCCC-----CccccCCchh--HHHHHHHcCc-----------ccCCeEEEECCCCCcccc
Q 011791 155 FKRDLGSMP-----WLALPFKDKS--REKLARYFEL-----------STLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 155 ~~~~~~~~~-----~~~~~~~~~~--~~~l~~~~~v-----------~~~P~~~lid~~G~i~~~ 201 (477)
.+++...++ |..+...... .....+.|++ .+.|.++|||++|+++..
T Consensus 85 l~~y~~~~~~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~ 149 (172)
T d1xzoa1 85 LKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKD 149 (172)
T ss_dssp HHHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEE
T ss_pred HHHHHHHhccccccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEE
Confidence 777776542 5444433221 1223344443 234789999999998854
|
| >d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=2e-15 Score=134.78 Aligned_cols=138 Identities=17% Similarity=0.162 Sum_probs=111.3
Q ss_pred hccCCCccee----ccCCCceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHH
Q 011791 242 LVSGDLDFVV----GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFD 316 (477)
Q Consensus 242 ~~~~~p~f~l----~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~ 316 (477)
++...|+|.+ +.+|++++|++++||++||+|| +.||+.|..++..|++++++|++. +++|++||.| +....+
T Consensus 7 VG~~AP~F~l~~~~d~~~~~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~--g~~vigIS~D-~~~~~~ 83 (197)
T d1qmva_ 7 IGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKL--GCEVLGVSVD-SQFTHL 83 (197)
T ss_dssp TTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTT--TEEEEEEESS-CHHHHH
T ss_pred CCCcCCCCCCcceeCCCCcEEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhccC--CcEEEEEecC-CHHHHH
Confidence 5667899976 4567889999999999999999 899999999999999999999987 7999999999 445667
Q ss_pred HHHhcC------CCceeccCcchhHHHHHhcCCC------CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHH
Q 011791 317 EFFKGM------PWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKE 384 (477)
Q Consensus 317 ~~~~~~------~~~~~p~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~ 384 (477)
+|...+ .-+.||++.|....+++.||+. .+|++|+||++|+|+.... +.. -..+++++
T Consensus 84 ~~~~~~~~~~~~~~~~fpll~D~~~~va~~ygv~~~~~g~~~R~tfiID~~g~Ir~~~~------~~~----~~~r~~~E 153 (197)
T d1qmva_ 84 AWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITV------NDL----PVGRSVDE 153 (197)
T ss_dssp HHHTSCGGGTCCCSCSSCEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEE------ECT----TBCCCHHH
T ss_pred hhhcchhhhcCcCCCccceEeccchHHHHHhCCCcccCCeeeEEEEEECCCCcEEEEEe------cCC----CcccCHHH
Confidence 777654 2478999999999999999984 4688999999999987632 111 12344566
Q ss_pred HHHHHHHH
Q 011791 385 IDGQYNEM 392 (477)
Q Consensus 385 l~~~~~~~ 392 (477)
+++.|+.+
T Consensus 154 ~lr~l~al 161 (197)
T d1qmva_ 154 ALRLVQAF 161 (197)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 66666654
|
| >d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin-3 (AOP-1, SP-22) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.59 E-value=2.1e-15 Score=130.36 Aligned_cols=117 Identities=21% Similarity=0.322 Sum_probs=92.8
Q ss_pred CcCCCce----ecCCCCeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHh
Q 011791 84 SHSRDFV----ISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 158 (477)
Q Consensus 84 ~~~p~fl----~~~~g~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~ 158 (477)
+.+|+|. .+.+|+.++|++++||+|+|+|| +.||++|..+++.++++++++.+.| .+|++||.|... ..+.+
T Consensus 1 ~~AP~F~l~~~~~~~~~~vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~--~~vigIS~d~~~-~~~~~ 77 (158)
T d1zyea1 1 QHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVN--CEVVAVSVDSHF-SHLAW 77 (158)
T ss_dssp SBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTT--EEEEEEESSCHH-HHHHH
T ss_pred CCCCCCccceeeCCCccEEeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCC--ceEEeccCcCHH-HHHHH
Confidence 3689994 26678899999999999999999 8999999999999999999999988 999999999643 23333
Q ss_pred hcC------CCCccccCCchhHHHHHHHcCcc------cCCeEEEECCCCCccccch
Q 011791 159 LGS------MPWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 159 ~~~------~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~~ 203 (477)
... ...+.++...+....+.+.||+. ..|+++|||++|+|++...
T Consensus 78 ~~~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~~g~~~R~tfvID~~G~I~~~~i 134 (158)
T d1zyea1 78 INTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSV 134 (158)
T ss_dssp HTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEE
T ss_pred HhhhHhhccccccccccccccccHHHHHHHhccccCCccccEEEEECCCCEEEEEEE
Confidence 332 12344555555556789999984 3678999999999987653
|
| >d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=1.8e-15 Score=131.67 Aligned_cols=117 Identities=13% Similarity=0.177 Sum_probs=89.4
Q ss_pred ccCcCCCcee-cCCCCeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhh
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 159 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~ 159 (477)
+|.++|+|.+ +.+|+.++|++++||+++|+|| +.||++|..+++.|++++.++. + +++++||.|. ....+++.
T Consensus 20 vG~~APdF~L~~~~g~~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~--~--~~vv~Is~d~-~~~~~~~~ 94 (164)
T d1qxha_ 20 AGSKAQTFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEID--N--TVVLCISADL-PFAQSRFC 94 (164)
T ss_dssp TTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST--T--EEEEEEESSC-HHHHTTCC
T ss_pred CCCCCCCeEEECCCCCEEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhhc--c--ceeeeEEcCC-HHHHHHHH
Confidence 6899999954 9999999999999999999888 6799999999999999887653 3 8999999984 44444444
Q ss_pred cCCCC-ccccCCchhHHHHHHHcCcc---------cCCeEEEECCCCCccccch
Q 011791 160 GSMPW-LALPFKDKSREKLARYFELS---------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 160 ~~~~~-~~~~~~~~~~~~l~~~~~v~---------~~P~~~lid~~G~i~~~~~ 203 (477)
..... ..+....+....+.+.||+. ..|+++|||++|+|++..+
T Consensus 95 ~~~~~~~~~~~~~d~~~~~~~~ygv~~~~~~~~g~~~ra~fvID~~G~I~y~~~ 148 (164)
T d1qxha_ 95 GAEGLNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDENDNVIFSQL 148 (164)
T ss_dssp SSTTCTTEEEEECTTCHHHHHHTTCBBCSSTTTTSBCCEEEEECTTSBEEEEEE
T ss_pred HHhCCCcceeeccccchhhHHhcCeEeecCcccCcccCEEEEEcCCCEEEEEEE
Confidence 44321 11222223346788899873 2478999999999998754
|
| >d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=5.2e-15 Score=119.44 Aligned_cols=70 Identities=27% Similarity=0.581 Sum_probs=62.1
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+|+|+|+|||+||++|+.+.|.+.++++++..+ +.++.+++|... .+++.|+|+
T Consensus 20 ~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~vd~d~~~-----------------------~l~~~~~v~ 73 (108)
T d2trxa_ 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNP-----------------------GTAPKYGIR 73 (108)
T ss_dssp SSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTCT-----------------------THHHHTTCC
T ss_pred CCcEEEEEECCCCCCccccCcHHHHHHHHhhcc---eeeeeccccchh-----------------------hHHHHhCCC
Confidence 689999999999999999999999998887654 788888887554 589999999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++||++++ ++|+.+.+
T Consensus 74 ~~PT~~~~-~~G~~v~~ 89 (108)
T d2trxa_ 74 GIPTLLLF-KNGEVAAT 89 (108)
T ss_dssp SSSEEEEE-ETTEEEEE
T ss_pred cEEEEEEE-ECCEEEEE
Confidence 99999999 78999887
|
| >d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin reductase TsaA species: Helicobacter pylori [TaxId: 210]
Probab=99.58 E-value=2.1e-15 Score=132.04 Aligned_cols=120 Identities=19% Similarity=0.275 Sum_probs=94.6
Q ss_pred hccCcCCCcee-cCCC-----CeEecCCCCCC-EEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCH
Q 011791 81 VLTSHSRDFVI-SSDG-----RKISVSDLEGK-TIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE 152 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g-----~~v~ls~l~gk-~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~ 152 (477)
++|+++|||.+ +.+| +.++|+++.|| +|+|+|| +.|||+|..+++.+++.++++++.| ++|++||.|...
T Consensus 2 lVG~~APdF~l~~~~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g--~~Vvgis~d~~~ 79 (170)
T d1zofa1 2 VVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKG--FNVIGVSIDSEQ 79 (170)
T ss_dssp CTTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTT--EEEEEEESSCHH
T ss_pred CCCCcCCCcCcccccCCCccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCC--eeEecccccchh
Confidence 47999999955 5555 57999999986 7999999 9999999999999999999999998 999999999643
Q ss_pred H--HHHHhhcC---CCCccccCCchhHHHHHHHcCcc-----cCCeEEEECCCCCccccc
Q 011791 153 E--SFKRDLGS---MPWLALPFKDKSREKLARYFELS-----TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 153 ~--~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~i~~~~ 202 (477)
. .|.+.... ...+.++...+....+.+.||+. ..|+++|||++|+|++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~~ygv~~~~~~~~r~tfvID~~G~I~~~~ 139 (170)
T d1zofa1 80 VHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAV 139 (170)
T ss_dssp HHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETTTEECEEEEEEETTTEEEEEE
T ss_pred hHHHHHhhhhhcccccCcccccccccccHHHHHcCCCccccceeEEEEEEcCCCeEEEEE
Confidence 2 34433321 12334444455567799999983 578999999999998754
|
| >d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]
Probab=99.57 E-value=6.2e-15 Score=118.13 Aligned_cols=70 Identities=19% Similarity=0.508 Sum_probs=62.5
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+|+++|+|||+||++|+++.|.+.++.+++.++ +.++.|+.|... .++++|+|+
T Consensus 17 ~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~---~~~~~v~~d~~~-----------------------~l~~~~~V~ 70 (104)
T d1fb6a_ 17 EVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLNTDEAP-----------------------GIATQYNIR 70 (104)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-----------------------HHHHHTTCC
T ss_pred CCcEEEEEEcCccCCccccCchhHHHHHhhcCc---cceeEEecccch-----------------------hhhhhccee
Confidence 689999999999999999999999999998765 677778877654 689999999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++||++++ ++|+.+.+
T Consensus 71 ~~Pt~~~~-~~G~~v~~ 86 (104)
T d1fb6a_ 71 SIPTVLFF-KNGERKES 86 (104)
T ss_dssp SSSEEEEE-ETTEEEEE
T ss_pred eeeEEEEE-EcCeEEEE
Confidence 99999999 79999887
|
| >d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=3.8e-15 Score=119.58 Aligned_cols=69 Identities=22% Similarity=0.469 Sum_probs=59.9
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+|+|+|+|||+||++|+.+.|.+.++.+++.+ +.++.|++|... .+++.|+|+
T Consensus 20 ~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~----~~~~~vd~d~~~-----------------------~~~~~~~V~ 72 (105)
T d2ifqa1 20 DKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDDCQ-----------------------DVASECEVK 72 (105)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTCH-----------------------HHHHHTTCC
T ss_pred CCEEEEEEEcCCccchhhhhhhhhhhcccccc----ceeeecccccCH-----------------------hHHHHcCce
Confidence 68999999999999999999999999887753 456667766544 689999999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++||++++ ++|+.+.+
T Consensus 73 ~~Pt~~~~-~~G~~v~~ 88 (105)
T d2ifqa1 73 CMPTFQFF-KKGQKVGE 88 (105)
T ss_dssp BSSEEEEE-ETTEEEEE
T ss_pred EEEEEEEE-ECCEEEEE
Confidence 99999999 79999988
|
| >d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.57 E-value=5.2e-15 Score=120.22 Aligned_cols=70 Identities=17% Similarity=0.412 Sum_probs=62.6
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+|+|+|+|||+||++|+.+.|.+.+++++++++ +.++.|++|... .+++.|+|+
T Consensus 24 ~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~---v~~~~vd~d~~~-----------------------~l~~~~~v~ 77 (112)
T d1ep7a_ 24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYAGK---VIFLKVDVDAVA-----------------------AVAEAAGIT 77 (112)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTTH-----------------------HHHHHHTCC
T ss_pred CCeEEEEEEcCCcCCCcccchhhhhhhhcccce---EEEEEeeccccc-----------------------ccccccccc
Confidence 799999999999999999999999999998754 778888877554 689999999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++||++++ ++|+.+.+
T Consensus 78 ~~Pt~~~~-~~G~~v~~ 93 (112)
T d1ep7a_ 78 AMPTFHVY-KDGVKADD 93 (112)
T ss_dssp BSSEEEEE-ETTEEEEE
T ss_pred CCCEEEEE-ECCEEEEE
Confidence 99999999 79999887
|
| >d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Anabaena sp., pcc 7120 [TaxId: 1167]
Probab=99.56 E-value=8.7e-15 Score=118.09 Aligned_cols=70 Identities=30% Similarity=0.628 Sum_probs=62.5
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+|+++|+|||+||++|+++.|.+.+++++++++ +.++.|++|... .+++.|+|+
T Consensus 20 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~d~~~-----------------------~l~~~~~I~ 73 (108)
T d1thxa_ 20 EQPVLVYFWASWCGPCQLMSPLINLAANTYSDR---LKVVKLEIDPNP-----------------------TTVKKYKVE 73 (108)
T ss_dssp SSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEESTTCH-----------------------HHHHHTTCC
T ss_pred CCcEEEEEECCCCCCccccchHHHHHHHhcCCc---ceeceecccccH-----------------------HHHHHhccc
Confidence 589999999999999999999999999998765 788888887654 689999999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++||++++ ++|+.+.+
T Consensus 74 ~~Pt~~~~-~~g~~v~~ 89 (108)
T d1thxa_ 74 GVPALRLV-KGEQILDS 89 (108)
T ss_dssp SSSEEEEE-ETTEEEEE
T ss_pred CCCEEEEE-ECCEEEEE
Confidence 99999999 58998877
|
| >d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol peroxidase PsaD species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.56 E-value=3.3e-15 Score=129.93 Aligned_cols=117 Identities=14% Similarity=0.093 Sum_probs=90.9
Q ss_pred hccCCCccee-ccCCCceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHH
Q 011791 242 LVSGDLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 319 (477)
Q Consensus 242 ~~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~ 319 (477)
++...|+|.| +.+|+++++++++||++||.|| +.|||.|..+++.+.+.+++++ ++.++.|+.| +....+++.
T Consensus 18 vG~~aPdF~L~~~~g~~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~----~~~vv~Is~d-~~~~~~~~~ 92 (163)
T d1psqa_ 18 VGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD----NTVVLTVSMD-LPFAQKRWC 92 (163)
T ss_dssp TTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT----TEEEEEEESS-CHHHHHHHH
T ss_pred CCCCCCCeEEECCCCCEEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhhc----ccceEEEEec-cHHHHHHHH
Confidence 4566799999 9999999999999999999999 6799999999999987766663 5889999988 445556666
Q ss_pred hcCCCceeccC-cchhHHHHHhcCCCC------cceEEEECCCCcEEEecc
Q 011791 320 KGMPWLALPFG-DARKASLSRKFKVSG------IPMLVAIGPSGRTITKEA 363 (477)
Q Consensus 320 ~~~~~~~~p~~-~d~~~~l~~~~~v~~------~Pt~~lid~~G~iv~~~~ 363 (477)
........+.. ++....+.+.||+.. .+++++||++|+|++.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~ygv~~~~~~~~~Ra~fvID~~G~I~y~~~ 143 (163)
T d1psqa_ 93 GAEGLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEY 143 (163)
T ss_dssp HHHTCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEE
T ss_pred HHcCCcceeeeccccchhHHHhheeecccccceeEEEEEECCCCEEEEEEE
Confidence 65543333333 345667889999742 236899999999998753
|
| >d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Plasmodium yoelii [TaxId: 5861]
Probab=99.56 E-value=8.2e-15 Score=128.10 Aligned_cols=134 Identities=22% Similarity=0.256 Sum_probs=106.4
Q ss_pred CCccee-c----cCCCceecccCCC-CEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHH
Q 011791 246 DLDFVV-G----KNGGKVPVSDLAG-KTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 318 (477)
Q Consensus 246 ~p~f~l-~----~~g~~~~l~~~~g-k~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~ 318 (477)
+|||.+ + .++++++|+++.| |++||+|| +.||+.|..++..+++.+++|++. +++||+||.| +....++|
T Consensus 2 APdF~l~~~~gd~~~~~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~--g~~vigIS~D-~~~~~~~~ 78 (170)
T d2h01a1 2 APSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKER--NVELLGCSVD-SKFTHLAW 78 (170)
T ss_dssp CCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHT--TEEEEEEESS-CHHHHHHH
T ss_pred CCCeEeeeecCCCCccEEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcC--CeeEecccCC-cHHHHHhH
Confidence 589987 3 4556899999998 79999999 899999999999999999999987 7999999999 44555677
Q ss_pred HhcC------CCceeccCcchhHHHHHhcCCC-----CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHH
Q 011791 319 FKGM------PWLALPFGDARKASLSRKFKVS-----GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDG 387 (477)
Q Consensus 319 ~~~~------~~~~~p~~~d~~~~l~~~~~v~-----~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~ 387 (477)
.+.+ .-+.+|++.|....+.+.||+. ..+++++||++|+|+...... . + ..++.+++++
T Consensus 79 ~~~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~~~~~R~tfiId~~G~I~~~~~~~----~-----~-~~~~~~eil~ 148 (170)
T d2h01a1 79 KKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVLIDKQGVVQHLLVNN----L-----A-LGRSVDEILR 148 (170)
T ss_dssp HTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECCEEEEECTTSBEEEEEEGG----G-----S-SGGGHHHHHH
T ss_pred hhhhhhhccccccCCceeEcCccHHHHHhCCccccccceeeeEEEcCCCeEEEEEEec----C-----C-CCCCHHHHHH
Confidence 6543 2367888999999999999983 457999999999998874211 0 1 2345677777
Q ss_pred HHHHH
Q 011791 388 QYNEM 392 (477)
Q Consensus 388 ~~~~~ 392 (477)
.|+++
T Consensus 149 ~l~~l 153 (170)
T d2h01a1 149 LIDAL 153 (170)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77765
|
| >d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Trypanosoma brucei [TaxId: 5691]
Probab=99.56 E-value=5.5e-15 Score=120.18 Aligned_cols=87 Identities=18% Similarity=0.444 Sum_probs=70.9
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|+|||+||++|+++.|.|.++++++. ++.++.|++|... .+++.|+|+
T Consensus 26 ~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~d~~~-----------------------~l~~~~~V~ 78 (113)
T d1r26a_ 26 DILTVAWFTAVWCGPCKTIERPMEKIAYEFP----TVKFAKVDADNNS-----------------------EIVSKCRVL 78 (113)
T ss_dssp SSCEEEEEECTTCHHHHHTHHHHHHHHHHCT----TSEEEEEETTTCH-----------------------HHHHHTTCC
T ss_pred CCeEEEEEECCCCccchhhceeccccccccc----cccccccccccch-----------------------hhHHHcccc
Confidence 6899999999999999999999999988874 4788888887654 689999999
Q ss_pred CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHc
Q 011791 345 GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAK 394 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 394 (477)
++||++++ ++|+.+.+ ..|.+. +.+.+.|+++++
T Consensus 79 ~~Pt~~~~-~~G~~v~~-------~~G~~~--------~~l~~~l~~~ik 112 (113)
T d1r26a_ 79 QLPTFIIA-RSGKMLGH-------VIGANP--------GMLRQKLRDIIK 112 (113)
T ss_dssp SSSEEEEE-ETTEEEEE-------EESSCH--------HHHHHHHHHHHH
T ss_pred CCCEEEEE-ECCEEEEE-------EeCCCH--------HHHHHHHHHHhc
Confidence 99999999 79999987 344322 456666666554
|
| >d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Salmonella typhimurium [TaxId: 90371]
Probab=99.56 E-value=1.4e-15 Score=134.42 Aligned_cols=121 Identities=15% Similarity=0.227 Sum_probs=96.3
Q ss_pred hhccCcCCCcee----cCCCCeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCH--
Q 011791 80 SVLTSHSRDFVI----SSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE-- 152 (477)
Q Consensus 80 ~~~g~~~p~fl~----~~~g~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~-- 152 (477)
+++|.++|+|.. +.+.+.|++++++||+|+|+|| +.||+.|..+++.+++.++++++.| ++|++||.|...
T Consensus 1 ~lIg~~aP~F~~~a~~~g~~~~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~--~~v~gIS~Ds~~sh 78 (186)
T d1n8ja_ 1 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLG--VDVYSVSTDTHFTH 78 (186)
T ss_dssp CCTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTT--EEEEEEESSCHHHH
T ss_pred CCCCCcCCCCEeeeeeCCeeEEEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhccccc--EEEEeccccCHHHH
Confidence 478999999954 3334578999999999999999 7788999999999999999999988 999999998633
Q ss_pred HHHHHhhcCCCCccccCCchhHHHHHHHcCcc------cCCeEEEECCCCCccccc
Q 011791 153 ESFKRDLGSMPWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~ 202 (477)
..|.+.......+.+|...+...++++.||+. ..|+++|||++|+|.+..
T Consensus 79 ~~f~~~~~~~~~~~fpllsD~~~~v~~~yGv~~~~~g~~~r~tfiID~~G~Ir~~~ 134 (186)
T d1n8ja_ 79 KAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIE 134 (186)
T ss_dssp HHHHHHCTTGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHhccccccccccccccccHHHHHHHHhCCCcccCCcceeeEEEECchheEEEEe
Confidence 34544443322345555666677899999983 468899999999987754
|
| >d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=6.1e-15 Score=118.65 Aligned_cols=87 Identities=15% Similarity=0.265 Sum_probs=70.6
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.+|+++|+|||+||++|+++.|.+.+++++++ ++.++.|++|... .+++.|+|
T Consensus 20 ~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~----~~~f~~vd~d~~~-----------------------~l~~~~~v 72 (107)
T d1gh2a_ 20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP----QAVFLEVDVHQCQ-----------------------GTAATNNI 72 (107)
T ss_dssp TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTSH-----------------------HHHHHTTC
T ss_pred CCCEEEEEEECCCCCCccccchhhhccccccc----cccccccccccch-----------------------hhhhhcCc
Confidence 37899999999999999999999999998875 3667777777544 68999999
Q ss_pred CCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHH
Q 011791 344 SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMA 393 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 393 (477)
+++||++++ ++|+.+.+ ..|++. ++|.+.+++.+
T Consensus 73 ~~~Pt~~~~-~~G~~v~~-------~~G~~~--------~~l~~~i~k~l 106 (107)
T d1gh2a_ 73 SATPTFQFF-RNKVRIDQ-------YQGADA--------VGLEEKIKQHL 106 (107)
T ss_dssp CSSSEEEEE-ETTEEEEE-------EESSCH--------HHHHHHHHHHH
T ss_pred eeceEEEEE-ECCEEEEE-------EeCCCH--------HHHHHHHHHhh
Confidence 999999999 89999987 444332 55677776655
|
| >d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.56 E-value=8.2e-15 Score=119.44 Aligned_cols=69 Identities=23% Similarity=0.578 Sum_probs=60.2
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
++++||+|||+||++|+.+.|.+.++.+.++ ++.++.|+.|... .+++.|+|+
T Consensus 28 ~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~----~~~~~~vd~~~~~-----------------------~l~~~~~V~ 80 (114)
T d1xfla_ 28 KTLVVVDFTASWCGPCRFIAPFFADLAKKLP----NVLFLKVDTDELK-----------------------SVASDWAIQ 80 (114)
T ss_dssp TCEEEEEEECTTCHHHHHHHHHHHHHHHHCS----SEEEEEEETTTSH-----------------------HHHHHTTCC
T ss_pred CCeEEEEEEcCCCCCccccccchhhhccccc----ccceeEEEeeece-----------------------eecccccee
Confidence 7899999999999999999999999988764 4667777766543 689999999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++||++++ ++|+.+.+
T Consensus 81 ~~Pt~~~~-~~G~~v~~ 96 (114)
T d1xfla_ 81 AMPTFMFL-KEGKILDK 96 (114)
T ss_dssp SSSEEEEE-ETTEEEEE
T ss_pred eeEEEEEE-ECCEEEEE
Confidence 99999999 89999987
|
| >d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.55 E-value=2.8e-15 Score=130.76 Aligned_cols=115 Identities=19% Similarity=0.225 Sum_probs=84.9
Q ss_pred hccCCCccee-ccCCCceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHH
Q 011791 242 LVSGDLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 319 (477)
Q Consensus 242 ~~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~ 319 (477)
++...|+|.| +.+|++++|++++||++||+|| +.|||.|..+++.|++.+++ . +++|++|+.| +....+++.
T Consensus 19 iG~~aP~F~L~~~~g~~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~---~--g~~vv~Is~d-~~~~~~~~~ 92 (166)
T d1xvqa_ 19 VGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA---S--GATVLCVSKD-LPFAQKRFC 92 (166)
T ss_dssp TTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH---T--TCEEEEEESS-CHHHHTTCC
T ss_pred CcCCCCCeEEECCCCCEEehHHhCCcEEEEEeeecccccccHHHHHHHhhhccc---c--cccccccccc-hHHHHHHHH
Confidence 4667799999 9999999999999999999999 55889999998888765544 3 5789999998 445566666
Q ss_pred hcCCCceeccCcchhHHHHHhcCCC---------CcceEEEECCCCcEEEec
Q 011791 320 KGMPWLALPFGDARKASLSRKFKVS---------GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 320 ~~~~~~~~p~~~d~~~~l~~~~~v~---------~~Pt~~lid~~G~iv~~~ 362 (477)
+.+.........+....+.+.|++. ..|++|+||++|+|++.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~ra~fvID~~G~I~y~~ 144 (166)
T d1xvqa_ 93 GAEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTE 144 (166)
T ss_dssp ------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEE
T ss_pred HHhCCcccccccchhHHHHHHhCeeeccCcccCceeeEEEEEeCCCEEEEEE
Confidence 6555333333445556677777763 236899999999999874
|
| >d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Glutathione peroxidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=2.3e-14 Score=126.25 Aligned_cols=115 Identities=16% Similarity=0.154 Sum_probs=86.3
Q ss_pred Cccee-ccC-CCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC-------ChhHHHH
Q 011791 247 LDFVV-GKN-GGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSFDE 317 (477)
Q Consensus 247 p~f~l-~~~-g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~-------~~~~~~~ 317 (477)
-||.+ +++ |++++|++++||+|||.+||+||++|.+..+.|++++++|+++ +++|+++.++. +.+++++
T Consensus 4 ydf~~~~l~~g~~vsL~~ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~--g~~Il~fP~nqF~~qE~~~~~ei~~ 81 (184)
T d2f8aa1 4 YAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPR--GLVVLGFPCNQFGHQENAKNEEILN 81 (184)
T ss_dssp GGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCCSTTTTCSCHHHHHH
T ss_pred eeeEEEECCCCCEecHHHcCCCEEEEEEecccCCcchhhhHHHHHhhhhhccc--ceeEEEeeccccccccccchhhhhh
Confidence 47888 876 6789999999999999999999999999999999999999987 79999999864 3457888
Q ss_pred HHhcC----C-CceeccCc------chhHHHHH----h--------cCCCCcc-----------------eEEEECCCCc
Q 011791 318 FFKGM----P-WLALPFGD------ARKASLSR----K--------FKVSGIP-----------------MLVAIGPSGR 357 (477)
Q Consensus 318 ~~~~~----~-~~~~p~~~------d~~~~l~~----~--------~~v~~~P-----------------t~~lid~~G~ 357 (477)
|++.. . -..||+.. +....+.+ . .++.+.| +.+|||++|+
T Consensus 82 f~~~~~~~~~~~~~f~~~~ki~VnG~~a~ply~~Lk~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~WNFtKFLIdr~G~ 161 (184)
T d2f8aa1 82 SLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGV 161 (184)
T ss_dssp HHHHTSSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSC
T ss_pred hhheeccccccccccccceeeeecCCCCCHHHHHHHhhCCCCccccccccccccccccccccCCCccceEEEEEECCCCC
Confidence 88632 1 13444422 11112222 1 1233444 7899999999
Q ss_pred EEEecc
Q 011791 358 TITKEA 363 (477)
Q Consensus 358 iv~~~~ 363 (477)
++.+.+
T Consensus 162 vv~rf~ 167 (184)
T d2f8aa1 162 PLRRYS 167 (184)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 998854
|
| >d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]
Probab=99.54 E-value=1e-14 Score=118.71 Aligned_cols=70 Identities=24% Similarity=0.634 Sum_probs=61.0
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+|+|||+|||+||++|+.+.|.|.++.+++. ++.++.|++|... .+++.|+|+
T Consensus 26 ~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~vd~d~~~-----------------------~l~~~~~I~ 78 (113)
T d1ti3a_ 26 QKLIVVDFTASWCPPCKMIAPIFAELAKKFP----NVTFLKVDVDELK-----------------------AVAEEWNVE 78 (113)
T ss_dssp SSEEEEEEECSSCHHHHHHHHHHHHHHHHCS----SEEEEEEETTTCH-----------------------HHHHHHHCS
T ss_pred CCEEEEEEEcCccccchhhhhhhhhhhccCC----CceEEeeeeeccc-----------------------cccccCeec
Confidence 7999999999999999999999999888764 4677777777554 689999999
Q ss_pred CcceEEEECCCCcEEEec
Q 011791 345 GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~~ 362 (477)
++||++++ ++|+.+.+.
T Consensus 79 ~~Pt~~~~-k~G~~v~~~ 95 (113)
T d1ti3a_ 79 AMPTFIFL-KDGKLVDKT 95 (113)
T ss_dssp STTEEEEE-ETTEEEEEE
T ss_pred ccceEEEE-ECCEEEEEE
Confidence 99999999 699999883
|
| >d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=4.4e-14 Score=121.83 Aligned_cols=134 Identities=22% Similarity=0.374 Sum_probs=98.7
Q ss_pred ccee-ccCCCceecccCCCCEEEEEEeCCCCh-hhHhHhHHHHHHHHHHHhcC--CcEEEEEEeCCCC---hhHHHHHHh
Q 011791 248 DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCP-PCRAFLPKLIDAYKKIKERN--ESLEVVFISSDRD---QTSFDEFFK 320 (477)
Q Consensus 248 ~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~~--~~~~iv~i~~d~~---~~~~~~~~~ 320 (477)
||.| |.+|+++++++|+||++||+||++||+ .|....+.+.+++++++... ..+.++.++.+.+ ......+..
T Consensus 2 dF~L~d~~G~~vsl~d~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (160)
T d1wp0a1 2 PFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVK 81 (160)
T ss_dssp CCEEEETTSCEEEGGGGTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHH
T ss_pred CeEEEcCCCCEEcHHHhCCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHh
Confidence 6888 999999999999999999999999997 79999999999999887642 4567777777643 344555555
Q ss_pred cC--CCceeccCcchhHHHHHhcCCCCc---------------ceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHH
Q 011791 321 GM--PWLALPFGDARKASLSRKFKVSGI---------------PMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMK 383 (477)
Q Consensus 321 ~~--~~~~~p~~~d~~~~l~~~~~v~~~---------------Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~ 383 (477)
.. .|..++........+.+.|++... ++++|||++|+|+.+.+. ..++ +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~-----------~~~~---~ 147 (160)
T d1wp0a1 82 EFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQ-----------NKRK---G 147 (160)
T ss_dssp TTCTTCEEEECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEET-----------TCCH---H
T ss_pred hcCCCcccccCchHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECC-----------CCCH---H
Confidence 44 455555555555567777876433 578999999999987431 1122 5
Q ss_pred HHHHHHHHHHcC
Q 011791 384 EIDGQYNEMAKG 395 (477)
Q Consensus 384 ~l~~~~~~~~~~ 395 (477)
++.+.|.++++.
T Consensus 148 ~i~~~I~~~lk~ 159 (160)
T d1wp0a1 148 EIAASIATHMRP 159 (160)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 677777777764
|
| >d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.5e-14 Score=131.02 Aligned_cols=138 Identities=16% Similarity=0.207 Sum_probs=107.1
Q ss_pred hccCCCccee-ccCCCceecccCCC-CEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCC--hhHHH
Q 011791 242 LVSGDLDFVV-GKNGGKVPVSDLAG-KTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD--QTSFD 316 (477)
Q Consensus 242 ~~~~~p~f~l-~~~g~~~~l~~~~g-k~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~--~~~~~ 316 (477)
++...|+|.+ +.+|+ ++|+++.| |++||+|| +.||+.|..++..+++.+++|++. ++++++||+|.. ...|.
T Consensus 3 VGd~APdF~l~~~~G~-v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~--g~~v~giS~Ds~~sh~~~~ 79 (220)
T d1prxa_ 3 LGDVAPNFEANTTVGR-IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKR--NVKLIALSIDSVEDHLAWS 79 (220)
T ss_dssp TTCBCCCCEEEETTEE-EEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTT--TEEEEEEESSCHHHHHHHH
T ss_pred CCCCCCCcEeecCCCC-EEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcc--cceeeccccccccchhhhh
Confidence 4667799999 77775 99999987 79999999 789999999999999999999987 799999999953 23343
Q ss_pred HHHhcC------CCceeccCcchhHHHHHhcCCC------------CcceEEEECCCCcEEEeccchhhhhcCCCCCCCC
Q 011791 317 EFFKGM------PWLALPFGDARKASLSRKFKVS------------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFT 378 (477)
Q Consensus 317 ~~~~~~------~~~~~p~~~d~~~~l~~~~~v~------------~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~ 378 (477)
+.++.. .-+.||++.|.+..+++.||+- ..+++||||++|+|+.... +. ...
T Consensus 80 ~~~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~------~~----~~~ 149 (220)
T d1prxa_ 80 KDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSIL------YP----ATT 149 (220)
T ss_dssp HHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEE------CC----TTB
T ss_pred hhhhhccccccccCcccccccCcccHHHHHhCCccccccccccceeeeEEEEEEcCccceeEEEE------ec----CCc
Confidence 333311 2378999999999999999984 4578999999999988742 11 112
Q ss_pred HHHHHHHHHHHHHH
Q 011791 379 EERMKEIDGQYNEM 392 (477)
Q Consensus 379 ~~~~~~l~~~~~~~ 392 (477)
.++++++++.++.+
T Consensus 150 gR~~dEiLr~l~al 163 (220)
T d1prxa_ 150 GRNFDEILRVVISL 163 (220)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHH
Confidence 34567777776664
|
| >d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin species: Aeropyrum pernix [TaxId: 56636]
Probab=99.53 E-value=9.2e-15 Score=133.59 Aligned_cols=119 Identities=16% Similarity=0.237 Sum_probs=97.6
Q ss_pred hccCcCCCcee-cCCCCeEecCCC---CCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCC--HH
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSDL---EGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE--EE 153 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~l---~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~--~~ 153 (477)
++|.++|+|.+ +.+| ++.++++ +||+++|+|| +.||+.|..+++.+++++++++++| ++||+||+|+. ..
T Consensus 2 lIGd~aPdF~l~t~~G-~i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g--~~vigiS~Ds~~sh~ 78 (237)
T d2zcta1 2 LIGERFPEMEVTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG--VDLIGLSVDSVFSHI 78 (237)
T ss_dssp CTTSBCCCEEEEETTE-EEEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTT--EEEEEEESSCHHHHH
T ss_pred CCCCCCCCeEEEcCCC-CEEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCC--cceeeccCCcHHHHH
Confidence 47999999965 7777 4777764 8999999988 9999999999999999999999998 99999999973 34
Q ss_pred HHHHhhcC--CCCccccCCchhHHHHHHHcCc-------ccCCeEEEECCCCCccccc
Q 011791 154 SFKRDLGS--MPWLALPFKDKSREKLARYFEL-------STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 154 ~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~v-------~~~P~~~lid~~G~i~~~~ 202 (477)
.|.+.... ...+.+|...+...++++.||+ ...|+++|||++|+|....
T Consensus 79 ~w~~~~~~~~~~~l~fpllsD~~~~vak~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~ 136 (237)
T d2zcta1 79 KWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTML 136 (237)
T ss_dssp HHHHHHHHHHCCCCCSCEEECGGGHHHHHTTCC----CCTTCCEEEEECTTSBEEEEE
T ss_pred HHhhhhhhhcccccccccccCcchHHHHHcCCccccccccceeeeEEECCCCEEEEEE
Confidence 55554442 2346666667777889999998 4689999999999987654
|
| >d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]
Probab=99.52 E-value=2.4e-14 Score=116.11 Aligned_cols=70 Identities=16% Similarity=0.469 Sum_probs=60.3
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+|+++|+||++||++|+.+.|.|.+++++++ ++.++.+++|... ..+++.|+|+
T Consensus 25 ~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~----~v~~~~vd~~~~~----------------------~~l~~~~~V~ 78 (112)
T d1f9ma_ 25 DKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL----DVIFLKLDCNQEN----------------------KTLAKELGIR 78 (112)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEECSSTT----------------------HHHHHHHCCS
T ss_pred CCEEEEEEEcCCCcchHHHHHHHhhhccccc----cceeecccccccc----------------------hhhHhheeec
Confidence 5899999999999999999999999998875 3567777765432 3689999999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++||++++ ++|+++.+
T Consensus 79 ~~Pt~~~~-k~G~~v~~ 94 (112)
T d1f9ma_ 79 VVPTFKIL-KENSVVGE 94 (112)
T ss_dssp SSSEEEEE-ETTEEEEE
T ss_pred cCCEEEEE-ECCEEEEE
Confidence 99999999 79999988
|
| >d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.50 E-value=1.2e-14 Score=126.69 Aligned_cols=117 Identities=19% Similarity=0.186 Sum_probs=81.8
Q ss_pred hccCcCCCcee-cCCCCeEecCCCCCCEEEEEEec-CCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHh
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSDLEGKTIGLYFSM-SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 158 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~l~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~ 158 (477)
-+|.++|+|.+ +.+|+.+++++++||+++|+||. .|||+|..+++.|++.+ .+.| ++|++||.|.. ....++
T Consensus 18 ~iG~~aP~F~L~~~~g~~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~---~~~g--~~vv~Is~d~~-~~~~~~ 91 (166)
T d1xvqa_ 18 AVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERA---AASG--ATVLCVSKDLP-FAQKRF 91 (166)
T ss_dssp CTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHH---HHTT--CEEEEEESSCH-HHHTTC
T ss_pred CCcCCCCCeEEECCCCCEEehHHhCCcEEEEEeeecccccccHHHHHHHhhhc---cccc--ccccccccchH-HHHHHH
Confidence 36899999955 99999999999999999999995 57888999988776554 4456 88999999854 444444
Q ss_pred hcCCCCccccCCchhHHHHHHHcCcc---------cCCeEEEECCCCCccccch
Q 011791 159 LGSMPWLALPFKDKSREKLARYFELS---------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~v~---------~~P~~~lid~~G~i~~~~~ 203 (477)
.+...........+....+.+.|++. ..|+++|||++|+|++...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~ra~fvID~~G~I~y~~~ 145 (166)
T d1xvqa_ 92 CGAEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTEL 145 (166)
T ss_dssp C------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEE
T ss_pred HHHhCCcccccccchhHHHHHHhCeeeccCcccCceeeEEEEEeCCCEEEEEEE
Confidence 44332211111122233456677652 2478999999999998754
|
| >d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.49 E-value=1.2e-13 Score=111.03 Aligned_cols=74 Identities=12% Similarity=0.176 Sum_probs=57.8
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhc-CCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKER-NESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 342 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~-~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 342 (477)
.++.+++.|||+||++|+++.|.+++++.+.... ...+.++.++.+.. ..+++.|+
T Consensus 14 ~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~-----------------------~~l~~~~~ 70 (107)
T d1a8la2 14 DQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEY-----------------------PEWADQYN 70 (107)
T ss_dssp CSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGC-----------------------HHHHHHTT
T ss_pred CCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccc-----------------------cccccccc
Confidence 3556677899999999999999999998775432 23466666665543 36899999
Q ss_pred CCCcceEEEECCCCcEEEe
Q 011791 343 VSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 343 v~~~Pt~~lid~~G~iv~~ 361 (477)
|.++||++++ ++|+.+.+
T Consensus 71 V~~vPTi~i~-~~G~~~~~ 88 (107)
T d1a8la2 71 VMAVPKIVIQ-VNGEDRVE 88 (107)
T ss_dssp CCSSCEEEEE-ETTEEEEE
T ss_pred cccceEEEEE-eCCeEEEE
Confidence 9999998776 79998887
|
| >d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=2.7e-14 Score=127.29 Aligned_cols=119 Identities=17% Similarity=0.228 Sum_probs=98.2
Q ss_pred hccCcCCCce----ecCCCCeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHH
Q 011791 81 VLTSHSRDFV----ISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESF 155 (477)
Q Consensus 81 ~~g~~~p~fl----~~~~g~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~ 155 (477)
.+|.++|+|. .+.+|+.+++++++||+++|+|| +.||+.|..++..|+++++++++.| ++|++||.|... ..
T Consensus 6 ~VG~~AP~F~l~~~~d~~~~~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g--~~vigIS~D~~~-~~ 82 (197)
T d1qmva_ 6 RIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLG--CEVLGVSVDSQF-TH 82 (197)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCHH-HH
T ss_pred cCCCcCCCCCCcceeCCCCcEEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhccCC--cEEEEEecCCHH-HH
Confidence 4799999993 37788999999999999999999 8999999999999999999999998 999999999643 33
Q ss_pred HHhhcCC------CCccccCCchhHHHHHHHcCcc------cCCeEEEECCCCCccccc
Q 011791 156 KRDLGSM------PWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 156 ~~~~~~~------~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~ 202 (477)
+++...+ .-+.+|...+..+.+++.||+. ..|+++|||++|+|.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~fpll~D~~~~va~~ygv~~~~~g~~~R~tfiID~~g~Ir~~~ 141 (197)
T d1qmva_ 83 LAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQIT 141 (197)
T ss_dssp HHHHTSCGGGTCCCSCSSCEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HhhhcchhhhcCcCCCccceEeccchHHHHHhCCCcccCCeeeEEEEEECCCCcEEEEE
Confidence 3343322 2355666667778899999983 478999999999997754
|
| >d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Haemophilus influenzae [TaxId: 727]
Probab=99.49 E-value=4.2e-14 Score=122.90 Aligned_cols=116 Identities=16% Similarity=0.171 Sum_probs=94.0
Q ss_pred hccCCCccee-ccCCCceecccCCCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHH
Q 011791 242 LVSGDLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 319 (477)
Q Consensus 242 ~~~~~p~f~l-~~~g~~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~ 319 (477)
++...|+|.| +.+|++++|++++||++||+|| +.||+.|..+++.|++.+++++ +..+++||+| +....++|.
T Consensus 18 vG~~APdF~L~d~~g~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~----~~~vi~iS~d-~~~~~~~~~ 92 (164)
T d1q98a_ 18 VGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS----NTIVLCISAD-LPFAQARFC 92 (164)
T ss_dssp TTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST----TEEEEEEESS-CHHHHTTCT
T ss_pred CCCCCCCcEEECCCCCEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc----cceEEeecCC-cHHHHHHHH
Confidence 4667799999 9999999999999999999999 5588899999999999999885 4889999998 556677777
Q ss_pred hcCCCceeccC-cchhHHHHHhcCCC-------C--cceEEEECCCCcEEEec
Q 011791 320 KGMPWLALPFG-DARKASLSRKFKVS-------G--IPMLVAIGPSGRTITKE 362 (477)
Q Consensus 320 ~~~~~~~~p~~-~d~~~~l~~~~~v~-------~--~Pt~~lid~~G~iv~~~ 362 (477)
+.++...++.. .+....+.+.|++. + .|++|+||++|+|++..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~~G~I~y~~ 145 (164)
T d1q98a_ 93 GAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQ 145 (164)
T ss_dssp TTTTCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEE
T ss_pred HHhCCccccccccccchhHHHhhceecccCccccCcccEEEEECCCCEEEEEE
Confidence 77765434333 34456788888863 2 37899999999999874
|
| >d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin dot5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.49 E-value=1e-14 Score=125.75 Aligned_cols=117 Identities=17% Similarity=0.214 Sum_probs=90.7
Q ss_pred ccCcCCCcee-cCCCCeEecCCC--CCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHH
Q 011791 82 LTSHSRDFVI-SSDGRKISVSDL--EGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKR 157 (477)
Q Consensus 82 ~g~~~p~fl~-~~~g~~v~ls~l--~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~ 157 (477)
+|.++|+|.+ +.+|+.++++++ +|++|+++|| ++||++|..+++.+++.|.++++. +.+++||.| +.+..++
T Consensus 7 vG~~aP~f~L~~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~---~~~~~is~d-~~~~~~~ 82 (156)
T d2a4va1 7 IGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEY---AAVFGLSAD-SVTSQKK 82 (156)
T ss_dssp TTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT---CEEEEEESC-CHHHHHH
T ss_pred CCCCCCCeEEECCCCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhhc---cceeeeccc-hhhhHHh
Confidence 6999999954 999999999998 5778888888 899999999999999999999764 578999988 5566666
Q ss_pred hhcCCCCccccCCchhHHHHHHHcCcccCC-----eEEEECCCCCccccch
Q 011791 158 DLGSMPWLALPFKDKSREKLARYFELSTLP-----TLVIIGPDGKTLHSNV 203 (477)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P-----~~~lid~~G~i~~~~~ 203 (477)
+.+++. +.+|...+...++++.||+...| +.++|+.+|+++.+.+
T Consensus 83 f~~~~~-l~f~~L~D~~~~v~~~ygv~~~~~~~~~r~~~i~~dg~i~~~~~ 132 (156)
T d2a4va1 83 FQSKQN-LPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIFVDGKLKFKRV 132 (156)
T ss_dssp HHHHHT-CSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEEETTEEEEEEE
T ss_pred hhcccC-ccceeccchHHHHHHHcCCCccccCCeeEEEEEEECCeEEEEEE
Confidence 666543 33444445556789999985555 2445557898877653
|
| >d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=2.2e-14 Score=117.45 Aligned_cols=82 Identities=17% Similarity=0.389 Sum_probs=59.9
Q ss_pred cccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHH
Q 011791 260 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 339 (477)
Q Consensus 260 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~ 339 (477)
+++.+||+|||+|||+||++|+.+.|.+....+..+. ..++.++.+.++.+.. ....+++
T Consensus 17 l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~-------------------~~~~l~~ 76 (117)
T d2fwha1 17 LVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKA-LADTVLLQANVTANDA-------------------QDVALLK 76 (117)
T ss_dssp HHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHH-TTTSEEEEEECTTCCH-------------------HHHHHHH
T ss_pred HHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHh-ccceEEEecccccchh-------------------HHHHHHh
Confidence 3444699999999999999999999988443332222 1235566666544321 2457899
Q ss_pred hcCCCCcceEEEECCCCcEEEe
Q 011791 340 KFKVSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 340 ~~~v~~~Pt~~lid~~G~iv~~ 361 (477)
.|+|.++||++++|++|+++..
T Consensus 77 ~~~v~~~Pt~~~~~~~G~~~~~ 98 (117)
T d2fwha1 77 HLNVLGLPTILFFDGQGQEHPQ 98 (117)
T ss_dssp HTTCCSSSEEEEECTTSCBCGG
T ss_pred hhehhhceEEEEEeCCCcEEec
Confidence 9999999999999999998754
|
| >d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.49 E-value=4.5e-14 Score=112.77 Aligned_cols=69 Identities=17% Similarity=0.481 Sum_probs=60.4
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|+|||+||++|+.+.|.+.++.+++++ ..++.+++|... ++++.|+|+
T Consensus 18 ~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~----~~~~~vd~d~~~-----------------------~~~~~~~V~ 70 (103)
T d1syra_ 18 NELVIVDFFAEWCGPCKRIAPFYEECSKTYTK----MVFIKVDVDEVS-----------------------EVTEKENIT 70 (103)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTTH-----------------------HHHHHTTCC
T ss_pred CCcEEEEEeCCcccCcccccccchhhhhcccc----eEEEeeccccCc-----------------------ceeeeeeee
Confidence 68999999999999999999999999988753 567777777544 689999999
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
++||++++ ++|+.+.+
T Consensus 71 ~~Pt~i~~-k~G~~v~~ 86 (103)
T d1syra_ 71 SMPTFKVY-KNGSSVDT 86 (103)
T ss_dssp SSSEEEEE-ETTEEEEE
T ss_pred cceEEEEE-ECCEEEEE
Confidence 99999999 79999987
|
| >d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Haemophilus influenzae [TaxId: 727]
Probab=99.46 E-value=9.9e-14 Score=120.45 Aligned_cols=118 Identities=14% Similarity=0.131 Sum_probs=88.2
Q ss_pred hccCcCCCce-ecCCCCeEecCCCCCCEEEEEEec-CCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHh
Q 011791 81 VLTSHSRDFV-ISSDGRKISVSDLEGKTIGLYFSM-SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 158 (477)
Q Consensus 81 ~~g~~~p~fl-~~~~g~~v~ls~l~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~ 158 (477)
-+|.++|+|. .+.+|+.++|++++||+++|+||. .||+.|..+++.|++.+++++ + ..|++||.|.. +..+++
T Consensus 17 ~vG~~APdF~L~d~~g~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~--~--~~vi~iS~d~~-~~~~~~ 91 (164)
T d1q98a_ 17 QVGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--N--TIVLCISADLP-FAQARF 91 (164)
T ss_dssp CTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST--T--EEEEEEESSCH-HHHTTC
T ss_pred CCCCCCCCcEEECCCCCEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc--c--ceEEeecCCcH-HHHHHH
Confidence 3699999995 499999999999999999999995 577889999999999999985 3 89999999854 344444
Q ss_pred hcCCCCcc-ccCCchhHHHHHHHcCcc-------c--CCeEEEECCCCCccccch
Q 011791 159 LGSMPWLA-LPFKDKSREKLARYFELS-------T--LPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 159 ~~~~~~~~-~~~~~~~~~~l~~~~~v~-------~--~P~~~lid~~G~i~~~~~ 203 (477)
........ ..........+.+.|++. + .|+++|||++|+|++...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~~G~I~y~~~ 146 (164)
T d1q98a_ 92 CGAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQL 146 (164)
T ss_dssp TTTTTCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEE
T ss_pred HHHhCCccccccccccchhHHHhhceecccCccccCcccEEEEECCCCEEEEEEE
Confidence 44433211 112222234567778762 2 388999999999998754
|
| >d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol peroxidase PsaD species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.46 E-value=5.7e-14 Score=121.94 Aligned_cols=116 Identities=17% Similarity=0.149 Sum_probs=86.6
Q ss_pred ccCcCCCce-ecCCCCeEecCCCCCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCH--HHHHH
Q 011791 82 LTSHSRDFV-ISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE--ESFKR 157 (477)
Q Consensus 82 ~g~~~p~fl-~~~~g~~v~ls~l~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~--~~~~~ 157 (477)
+|.++|+|. .+.+|+++++++++||+++|.|| +.|||+|..+++.|.+.+.+++ + +.+++||.|... ..|.+
T Consensus 18 vG~~aPdF~L~~~~g~~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~--~--~~vv~Is~d~~~~~~~~~~ 93 (163)
T d1psqa_ 18 VGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD--N--TVVLTVSMDLPFAQKRWCG 93 (163)
T ss_dssp TTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT--T--EEEEEEESSCHHHHHHHHH
T ss_pred CCCCCCCeEEECCCCCEEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhhc--c--cceEEEEeccHHHHHHHHH
Confidence 689999995 59999999999999999999998 7799999999998888777664 3 889999998542 33444
Q ss_pred hhcCCCCccccCCchhHHHHHHHcCccc------CCeEEEECCCCCccccch
Q 011791 158 DLGSMPWLALPFKDKSREKLARYFELST------LPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~------~P~~~lid~~G~i~~~~~ 203 (477)
.........+... ....+.+.||+.. .++++|||++|+|++...
T Consensus 94 ~~~~~~~~~~~~~--~~~~~~~~ygv~~~~~~~~~Ra~fvID~~G~I~y~~~ 143 (163)
T d1psqa_ 94 AEGLDNAIMLSDY--FDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEY 143 (163)
T ss_dssp HHTCTTSEEEECT--TTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEE
T ss_pred HcCCcceeeeccc--cchhHHHhheeecccccceeEEEEEECCCCEEEEEEE
Confidence 4433333332222 2235778888732 246899999999998754
|
| >d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: spliceosomal protein U5-15Kd domain: spliceosomal protein U5-15Kd species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=2.2e-13 Score=114.01 Aligned_cols=71 Identities=11% Similarity=0.274 Sum_probs=62.8
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+|+|||+|||+||++|+++.|.|.+++++++++ +.++.|++|..+ ++++.|+|+
T Consensus 22 ~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~---v~~~~VDvd~~~-----------------------~la~~~~I~ 75 (137)
T d1qgva_ 22 DRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF---AVIYLVDITEVP-----------------------DFNKMYELY 75 (137)
T ss_dssp SSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTCC-----------------------TTTTSSCSC
T ss_pred CCEEEEEEECCCCccchhcChHHHHHHHHhhcc---ceEEEeeccccc-----------------------hhhhhcCee
Confidence 689999999999999999999999999999865 778888887654 589999999
Q ss_pred CcceEEEECCCCcEEEec
Q 011791 345 GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~~ 362 (477)
++||++++ ++|+.+..+
T Consensus 76 ~~PT~~~f-~~g~~i~~~ 92 (137)
T d1qgva_ 76 DPCTVMFF-FRNKHIMID 92 (137)
T ss_dssp SSCEEEEE-ETTEEEEEE
T ss_pred eEEEEEEE-eCCcEEEEE
Confidence 99999999 788887654
|
| >d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Txnl5-like domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=6.6e-14 Score=114.66 Aligned_cols=80 Identities=24% Similarity=0.534 Sum_probs=62.4
Q ss_pred ccCCCCEEEEEEeCC-------CChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcch
Q 011791 261 SDLAGKTILLYFSAH-------WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDAR 333 (477)
Q Consensus 261 ~~~~gk~vll~F~a~-------wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~ 333 (477)
.+.+||+|+|+|||+ ||+||+++.|.+.++++.++++ +.++.|+++.... ..|.
T Consensus 17 ~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~---~~~~~vdv~~~~~----------------~~d~ 77 (119)
T d1woua_ 17 EQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEG---CVFIYCQVGEKPY----------------WKDP 77 (119)
T ss_dssp HTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTT---EEEEEEECCCHHH----------------HHCT
T ss_pred HHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCc---eEEEEEECCCCcc----------------cchh
Confidence 344689999999995 9999999999999998887654 8899898874321 1123
Q ss_pred hHHHHHhcCCCCcceEEEECCCCcEE
Q 011791 334 KASLSRKFKVSGIPMLVAIGPSGRTI 359 (477)
Q Consensus 334 ~~~l~~~~~v~~~Pt~~lid~~G~iv 359 (477)
+..+++.|+|+++||+++++..++++
T Consensus 78 ~~~l~~~~~V~~iPT~i~~~~g~~l~ 103 (119)
T d1woua_ 78 NNDFRKNLKVTAVPTLLKYGTPQKLV 103 (119)
T ss_dssp TCHHHHHHCCCSSSEEEETTSSCEEE
T ss_pred hhhHHHhCCeEEEEEEEEEECCeEEe
Confidence 45788999999999999996544444
|
| >d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.43 E-value=2e-13 Score=123.10 Aligned_cols=138 Identities=16% Similarity=0.211 Sum_probs=105.8
Q ss_pred hccCCCccee-ccC-CCceecccC-CCCEEEEEEe-CCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHH
Q 011791 242 LVSGDLDFVV-GKN-GGKVPVSDL-AGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDE 317 (477)
Q Consensus 242 ~~~~~p~f~l-~~~-g~~~~l~~~-~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~ 317 (477)
++...|+|.+ +.+ +.+++++++ +||++||+|| +.||+.|..++..+++.+++|++. +.+|++||.|. ...-++
T Consensus 4 iGd~aPdF~l~~~~~~g~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~--~~~vigiS~Ds-~~sh~~ 80 (219)
T d1xcca_ 4 LGATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKL--NCKLIGFSCNS-KESHDK 80 (219)
T ss_dssp TTCBCCCCEECBTTCSSCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTT--TEEEEEEESSC-HHHHHH
T ss_pred CCCCCCCcEeeccCCCCcEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhccc--ceEEEeecCcc-HhHHhH
Confidence 4667799999 444 347999985 7999999999 899999999999999999999987 79999999995 334344
Q ss_pred HHhc------CCCceeccCcchhHHHHHhcCCC------------CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCH
Q 011791 318 FFKG------MPWLALPFGDARKASLSRKFKVS------------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTE 379 (477)
Q Consensus 318 ~~~~------~~~~~~p~~~d~~~~l~~~~~v~------------~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~ 379 (477)
|.+. ..-+.||++.|.+..+++.||+- ...++||||++|+|+.... +... ..
T Consensus 81 w~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~------~~~~----~g 150 (219)
T d1xcca_ 81 WIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVL------YPAT----TG 150 (219)
T ss_dssp HHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEE------ECTT----BC
T ss_pred HhhhhHhhcccCCCCcccccccccHHHHHhCCcccccccCcccceeeeeeEEEcCcceEEEEEE------eCCC----cc
Confidence 4432 23478999999999999999982 2358999999999987632 2211 23
Q ss_pred HHHHHHHHHHHHH
Q 011791 380 ERMKEIDGQYNEM 392 (477)
Q Consensus 380 ~~~~~l~~~~~~~ 392 (477)
++++++++.|+++
T Consensus 151 r~~~EiLr~l~aL 163 (219)
T d1xcca_ 151 RNAHEILRVLKSL 163 (219)
T ss_dssp CCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 4556677776654
|
| >d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.43 E-value=2.2e-13 Score=111.64 Aligned_cols=106 Identities=20% Similarity=0.317 Sum_probs=76.0
Q ss_pred eeccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceecc
Q 011791 250 VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPF 329 (477)
Q Consensus 250 ~l~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~ 329 (477)
++.++..++.----.++.++|+||++||++|+++.|.+.++++.++.. ++.|..|+++...
T Consensus 12 v~~lt~~~f~~~i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~--~v~~~~vd~~~~~----------------- 72 (119)
T d2b5ea4 12 VVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK--NITLAQIDCTENQ----------------- 72 (119)
T ss_dssp CEECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT--TCEEEEEETTTCH-----------------
T ss_pred cEEcCHHHHHHHHhcCCeEEEEEECCccCcccccchhhhhhhhhhccc--ceeeeeeeccchH-----------------
Confidence 445555555332224789999999999999999999999999998653 5778878777543
Q ss_pred CcchhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHH
Q 011791 330 GDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMA 393 (477)
Q Consensus 330 ~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 393 (477)
.++++|+|.++||++++ ++|+..... .+.| +.+ .+.|.+.+++.+
T Consensus 73 ------~l~~~~~v~~~Pti~~f-~~g~~~~~~-----~y~g----~~~---~~~l~~fi~k~~ 117 (119)
T d2b5ea4 73 ------DLCMEHNIPGFPSLKIF-KNSDVNNSI-----DYEG----PRT---AEAIVQFMIKQS 117 (119)
T ss_dssp ------HHHHHTTCCSSSEEEEE-ETTCTTCEE-----ECCS----CCS---HHHHHHHHHHHT
T ss_pred ------HHHHHhccccCCeEEEE-ECCEEeeeE-----EecC----CCC---HHHHHHHHHHhh
Confidence 68999999999999999 677543321 1222 222 366677776654
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=3.1e-14 Score=118.61 Aligned_cols=94 Identities=12% Similarity=0.161 Sum_probs=74.0
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++|+|.|||+||++|+.+.|.|.++.++|.++ .+.+..|++|. +.++++.|+|+
T Consensus 36 ~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~--~~~~a~Vd~d~-----------------------~~~la~~~~V~ 90 (132)
T d2hfda1 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY--TWQVAIADLEQ-----------------------SEAIGDRFGVF 90 (132)
T ss_dssp EEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTS--CEEEEEECHHH-----------------------HHHHHHHHTCC
T ss_pred CcEEEEEeeCCCChhHHHHHHHHHHHHHHccCC--cceeEEEEecC-----------------------CHHHHHhhccC
Confidence 578999999999999999999999999998765 35555555443 24799999999
Q ss_pred CcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHcCCch
Q 011791 345 GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPE 398 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 398 (477)
++||++++ ++|+.+.+. .|.. +.++|.+.++.++....+
T Consensus 91 ~~PT~~~~-~~G~~v~~~-------~G~~-------~~~~l~~~i~~ll~~~~e 129 (132)
T d2hfda1 91 RFPATLVF-TGGNYRGVL-------NGIH-------PWAELINLMRGLVEPQQE 129 (132)
T ss_dssp SCCEEEEE-ETTEEEEEE-------CCCS-------CHHHHHHHHHHHHSCSSC
T ss_pred cceeEEEE-EcCcEeeee-------cCCC-------CHHHHHHHHHHHhCcccc
Confidence 99999999 899999873 3322 246778888888876544
|
| >d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: C1-like domain domain: Pdi-like hypothetical protein At1g60420 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.42 E-value=2.6e-14 Score=109.05 Aligned_cols=80 Identities=59% Similarity=1.174 Sum_probs=74.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHcCCchhhhcccc-ccceeeccCCceeccCCCCCCCeEEEEcCCCCCCcccccccccC
Q 011791 371 GAEAYPFTEERMKEIDGQYNEMAKGWPENVKHALH-EHELVLDRCGVYSCDGCDEEGRVWAFSCDECDFCLHPNCALGED 449 (477)
Q Consensus 371 g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~C~~~g~~w~~~~~~~~~~~~~~~~~~~~ 449 (477)
|+.++|+|++...++..++.+.-.++|.+++|..| .|+|.|.....++|+.|++.+.+|.|+|..|+|+||..||+..+
T Consensus 1 ~~~~~~~t~~~~~e~~~~~he~c~~~P~~I~Hp~Hp~H~L~L~~~~~~~C~~C~~~~~g~~Y~C~~C~f~LH~~CA~~P~ 80 (89)
T d1v5na_ 1 GSSGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIWSYHCDECDFDLHAKCALNED 80 (89)
T ss_dssp CCCCCCCCSSCCSHHHHHHHHHTSSSCSEECCSTTTTSCEEEECCSSCCCTTTSCCCCSCEEECTTTCCCCCHHHHHCSS
T ss_pred CCccCCchHHHHHHHHhhhhHHHhcCCCeecCCCCCCCCeEEecCCCCEeCCCCCCcCCcEeEeccCCCEecHHHcCCCc
Confidence 56778999999999999999999999999999999 69999998889999999999999999999999999999998654
Q ss_pred C
Q 011791 450 K 450 (477)
Q Consensus 450 ~ 450 (477)
+
T Consensus 81 ~ 81 (89)
T d1v5na_ 81 T 81 (89)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Salmonella typhimurium [TaxId: 90371]
Probab=99.41 E-value=7.9e-14 Score=114.11 Aligned_cols=90 Identities=12% Similarity=0.197 Sum_probs=62.2
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
..++|+|.|||+|||+|+.+.|.|.++.++|.+. ++.++.|++|. ...+++.|+|
T Consensus 29 ~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~--~~~~~~Vd~d~-----------------------~~~l~~~~~V 83 (119)
T d2es7a1 29 GDGVILLSSDPRRTPEVSDNPVMIAELLREFPQF--DWQVAVADLEQ-----------------------SEAIGDRFNV 83 (119)
T ss_dssp CSEEEEECCCSCC----CCHHHHHHHHHHTCTTS--CCEEEEECHHH-----------------------HHHHHHTTTC
T ss_pred CCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCC--ceEEEEEECCC-----------------------CHHHHHhcCc
Confidence 3578999999999999999999999999998753 35555555442 2479999999
Q ss_pred CCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHH
Q 011791 344 SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMA 393 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 393 (477)
+++||++++ ++|+.+.+. .|.. + .++|.+.++.++
T Consensus 84 ~~~Pt~~~~-~~G~~v~~~-------~G~~----~---~~~l~~~i~~lL 118 (119)
T d2es7a1 84 RRFPATLVF-TDGKLRGAL-------SGIH----P---WAELLTLMRSIV 118 (119)
T ss_dssp CSSSEEEEE-SCC----CE-------ESCC----C---HHHHHHHHHHHH
T ss_pred CcceEEEEE-EcCeEEEEe-------eCCC----C---HHHHHHHHHHHh
Confidence 999999999 799999883 3422 2 355667776655
|
| >d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.2e-13 Score=124.96 Aligned_cols=120 Identities=19% Similarity=0.282 Sum_probs=96.4
Q ss_pred hccCcCCCcee-cCCCCeEecCCCCC-CEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCC--HHHH
Q 011791 81 VLTSHSRDFVI-SSDGRKISVSDLEG-KTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE--EESF 155 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g~~v~ls~l~g-k~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~--~~~~ 155 (477)
.+|.++|+|.+ +.+|+ ++++++.| |+++|+|| +.||+.|..++..+++.++++++.| ++|++||.|.. ...|
T Consensus 2 ~VGd~APdF~l~~~~G~-v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g--~~v~giS~Ds~~sh~~~ 78 (220)
T d1prxa_ 2 LLGDVAPNFEANTTVGR-IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRN--VKLIALSIDSVEDHLAW 78 (220)
T ss_dssp CTTCBCCCCEEEETTEE-EEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSCHHHHHHH
T ss_pred CCCCCCCCcEeecCCCC-EEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhccc--ceeeccccccccchhhh
Confidence 47999999966 77785 99999987 78999988 7899999999999999999999998 99999999964 3445
Q ss_pred HHhhcC------CCCccccCCchhHHHHHHHcCcc------------cCCeEEEECCCCCccccch
Q 011791 156 KRDLGS------MPWLALPFKDKSREKLARYFELS------------TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 156 ~~~~~~------~~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~i~~~~~ 203 (477)
.+.+.. ..-+.+|...+...++++.||+- .+++++|||++|+|.+...
T Consensus 79 ~~~~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~ 144 (220)
T d1prxa_ 79 SKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSIL 144 (220)
T ss_dssp HHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEE
T ss_pred hhhhhhccccccccCcccccccCcccHHHHHhCCccccccccccceeeeEEEEEEcCccceeEEEE
Confidence 444331 12255666666778899999983 4689999999999987653
|
| >d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Bacterocin transport accessory protein Bta species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.40 E-value=4e-13 Score=109.42 Aligned_cols=75 Identities=20% Similarity=0.407 Sum_probs=60.1
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+++++|+||++||++|+.+.|.|.++.++++.+ +.+++++...+ .+....+.+.|+|.
T Consensus 26 ~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~-----v~~v~~~~~~~-----------------~~~~~~~~~~~~V~ 83 (115)
T d1zmaa1 26 KETATFFIGRKTCPYCRKFAGTLSGVVAETKAH-----IYFINSEEPSQ-----------------LNDLQAFRSRYGIP 83 (115)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCC-----CEEEETTCGGG-----------------HHHHHHHHHHHTCC
T ss_pred CCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhh-----hhhheeecccc-----------------cccccccccccccc
Confidence 789999999999999999999999998888543 66677764321 01124678899999
Q ss_pred CcceEEEECCCCcEEEec
Q 011791 345 GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~~ 362 (477)
++||++++ ++|+++.+.
T Consensus 84 ~~PTli~~-~~gk~~~~~ 100 (115)
T d1zmaa1 84 TVPGFVHI-TDGQINVRC 100 (115)
T ss_dssp SSCEEEEE-ETTEEEEEC
T ss_pred cccEEEEE-ECCEEEEEE
Confidence 99999999 689988874
|
| >d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=5.3e-13 Score=114.85 Aligned_cols=115 Identities=19% Similarity=0.345 Sum_probs=88.3
Q ss_pred Cc-eecCCCCeEecCCCCCCEEEEEEecCCCc-cchhhHHHHHHHHHHHhcCC--CcEEEEEEEcCC---CHHHHHHhhc
Q 011791 88 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYK-ASAEFTPRLVEVYEKLKGKG--ESFEIVLISLDD---EEESFKRDLG 160 (477)
Q Consensus 88 ~f-l~~~~g~~v~ls~l~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~g--~~~~vv~is~D~---~~~~~~~~~~ 160 (477)
|| +.|.+|++|++++++||+++|+||++||+ +|...++.|.++++++...+ ..+.+++++.+. ..+...+...
T Consensus 2 dF~L~d~~G~~vsl~d~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (160)
T d1wp0a1 2 PFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVK 81 (160)
T ss_dssp CCEEEETTSCEEEGGGGTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHH
T ss_pred CeEEEcCCCCEEcHHHhCCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHh
Confidence 56 45999999999999999999999999996 79999999999999887654 346777777764 3344444444
Q ss_pred --CCCCccccCCchhHHHHHHHcCcc---------------cCCeEEEECCCCCccccc
Q 011791 161 --SMPWLALPFKDKSREKLARYFELS---------------TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 161 --~~~~~~~~~~~~~~~~l~~~~~v~---------------~~P~~~lid~~G~i~~~~ 202 (477)
..+|..+.........+...|++. ..++++|||++|+++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~ 140 (160)
T d1wp0a1 82 EFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYF 140 (160)
T ss_dssp TTCTTCEEEECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEE
T ss_pred hcCCCcccccCchHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEE
Confidence 346777776666666777787752 346889999999998754
|
| >d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Plasmodium yoelii [TaxId: 5861]
Probab=99.40 E-value=9.4e-13 Score=114.76 Aligned_cols=116 Identities=19% Similarity=0.220 Sum_probs=90.5
Q ss_pred cCCCcee-----cCCCCeEecCCCCC-CEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHH
Q 011791 85 HSRDFVI-----SSDGRKISVSDLEG-KTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKR 157 (477)
Q Consensus 85 ~~p~fl~-----~~~g~~v~ls~l~g-k~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~ 157 (477)
.+|||.+ +.++++++|+++.| |+|+|+|| +.||+.|..++..+++.++++++.| ++||+||.|... ..++
T Consensus 1 kAPdF~l~~~~gd~~~~~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g--~~vigIS~D~~~-~~~~ 77 (170)
T d2h01a1 1 QAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERN--VELLGCSVDSKF-THLA 77 (170)
T ss_dssp BCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTT--EEEEEEESSCHH-HHHH
T ss_pred CCCCeEeeeecCCCCccEEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCC--eeEecccCCcHH-HHHh
Confidence 3789943 56677899999998 78999998 8999999999999999999999998 999999999543 2233
Q ss_pred hhcCC------CCccccCCchhHHHHHHHcCc-----ccCCeEEEECCCCCccccch
Q 011791 158 DLGSM------PWLALPFKDKSREKLARYFEL-----STLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 158 ~~~~~------~~~~~~~~~~~~~~l~~~~~v-----~~~P~~~lid~~G~i~~~~~ 203 (477)
+..++ .-+.+|...+....+.+.||+ ...++++|||++|+|.+...
T Consensus 78 ~~~~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~~~~~R~tfiId~~G~I~~~~~ 134 (170)
T d2h01a1 78 WKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVLIDKQGVVQHLLV 134 (170)
T ss_dssp HHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECCEEEEECTTSBEEEEEE
T ss_pred HhhhhhhhccccccCCceeEcCccHHHHHhCCccccccceeeeEEEcCCCeEEEEEE
Confidence 33321 223444455566778999998 33689999999999987653
|
| >d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MJ0307, thioredoxin/glutaredoxin-like protein species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.40 E-value=5.1e-14 Score=108.26 Aligned_cols=67 Identities=16% Similarity=0.343 Sum_probs=54.7
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
+|+.+++|||+||++|+.+.|.+.+++++++.. +.++.+..|... +++++|+|+
T Consensus 2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~~~~d~~~-----------------------~la~~~~V~ 55 (85)
T d1fo5a_ 2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDA---VEVEYINVMENP-----------------------QKAMEYGIM 55 (85)
T ss_dssp CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSS---EEEEEEESSSSC-----------------------CTTTSTTTC
T ss_pred CceEEEEEECCCCcChHhhhhhccccccccccc---cccccccccccc-----------------------cccccCCce
Confidence 588999999999999999999999998887654 667777666443 578899999
Q ss_pred CcceEEEECCCCcE
Q 011791 345 GIPMLVAIGPSGRT 358 (477)
Q Consensus 345 ~~Pt~~lid~~G~i 358 (477)
++||+++ +++|++
T Consensus 56 ~~Pt~~i-~~~g~~ 68 (85)
T d1fo5a_ 56 AVPTIVI-NGDVEF 68 (85)
T ss_dssp CSSEEEE-TTEEEC
T ss_pred EeeEEEE-ECCcEE
Confidence 9999765 567753
|
| >d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.40 E-value=3e-13 Score=109.40 Aligned_cols=74 Identities=22% Similarity=0.409 Sum_probs=62.9
Q ss_pred CCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 011791 103 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 182 (477)
Q Consensus 103 l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (477)
..||+|+|+|||+||+||+.+.|.+.++++++++. +.++.|..|... .+++.|+
T Consensus 23 ~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~---~~~~~i~~d~~~-----------------------~l~~~~~ 76 (111)
T d1xwaa_ 23 ASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDVDECE-----------------------DIAMEYN 76 (111)
T ss_dssp HTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTCH-----------------------HHHHHTT
T ss_pred cCCCEEEEEEECCcccCccccchhHHHHhhhcccc---eEEEEEEeecCc-----------------------chhhcCC
Confidence 46799999999999999999999999999999865 777778777543 3778999
Q ss_pred cccCCeEEEECCCCCccccch
Q 011791 183 LSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 183 v~~~P~~~lid~~G~i~~~~~ 203 (477)
|.++|+++++ ++|+.+.+..
T Consensus 77 V~~~Pt~~~~-~~G~~v~~~~ 96 (111)
T d1xwaa_ 77 ISSMPTFVFL-KNGVKVEEFA 96 (111)
T ss_dssp CCSSSEEEEE-ETTEEEEEEE
T ss_pred CccccEEEEE-ECCEEEEEEe
Confidence 9999999998 5888776653
|
| >d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=6.3e-14 Score=115.17 Aligned_cols=86 Identities=23% Similarity=0.442 Sum_probs=63.9
Q ss_pred eeccCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceecc
Q 011791 250 VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPF 329 (477)
Q Consensus 250 ~l~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~ 329 (477)
++.++..++.-.--.+|++||.|||+||++|+.+.|.+.++.++++.....+.++.|+++...
T Consensus 9 V~~l~~~~f~~~l~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~----------------- 71 (120)
T d1meka_ 9 VLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEES----------------- 71 (120)
T ss_dssp EEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCC-----------------
T ss_pred eEEcCHHHHHHHHhcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccch-----------------
Confidence 334444444321113799999999999999999999999999999765445666666665433
Q ss_pred CcchhHHHHHhcCCCCcceEEEECCCCcEE
Q 011791 330 GDARKASLSRKFKVSGIPMLVAIGPSGRTI 359 (477)
Q Consensus 330 ~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv 359 (477)
.++..|+|.++||++++ ++|+.+
T Consensus 72 ------~l~~~~~i~~~Pt~~~~-~~G~~~ 94 (120)
T d1meka_ 72 ------DLAQQYGVRGYPTIKFF-RNGDTA 94 (120)
T ss_dssp ------SSHHHHTCCSSSEEEEE-ESSCSS
T ss_pred ------hHHHHhCCccCCeEEEE-ECCeEe
Confidence 57889999999999999 566543
|
| >d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH807, thioredoxin/glutaredoxin-like protein species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.35 E-value=7.2e-13 Score=101.62 Aligned_cols=61 Identities=16% Similarity=0.307 Sum_probs=50.9
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
+..|||+||++|+++.|.+++++++++++ +.++.+++|... +++++|+|+++||
T Consensus 5 v~~F~a~wC~~C~~~~p~~~~l~~~~~~~---v~~~~vd~d~~~-----------------------~l~~~~~V~~~Pt 58 (85)
T d1nhoa_ 5 IEVFTSPTCPYCPMAIEVVDEAKKEFGDK---IDVEKIDIMVDR-----------------------EKAIEYGLMAVPA 58 (85)
T ss_dssp EEEESCSSSCCSTTHHHHHHHHHHHHCSS---CCEEEECTTTCG-----------------------GGGGGTCSSCSSE
T ss_pred EEEEECCCCcchHHHHHHHhhhccccccc---ccccccccccch-----------------------hhHHhcCceEeCE
Confidence 45699999999999999999999999754 788888887654 5899999999999
Q ss_pred EEEECCCC
Q 011791 349 LVAIGPSG 356 (477)
Q Consensus 349 ~~lid~~G 356 (477)
+++ +..|
T Consensus 59 ~~~-~~~~ 65 (85)
T d1nhoa_ 59 IAI-NGVV 65 (85)
T ss_dssp EEE-TTTE
T ss_pred EEE-CCcE
Confidence 765 4444
|
| >d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Glutathione peroxidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=2.6e-12 Score=112.85 Aligned_cols=73 Identities=16% Similarity=0.209 Sum_probs=61.5
Q ss_pred CCCcee-cCC-CCeEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCC-------CHHHHH
Q 011791 86 SRDFVI-SSD-GRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EEESFK 156 (477)
Q Consensus 86 ~p~fl~-~~~-g~~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~-------~~~~~~ 156 (477)
.-||.+ +.+ |+.++|++++||+|||.+||+||++|....+.|+++|++|+++| ++|+++++++ +.++..
T Consensus 3 iydf~~~~l~~g~~vsL~~ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g--~~Il~fP~nqF~~qE~~~~~ei~ 80 (184)
T d2f8aa1 3 VYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRG--LVVLGFPCNQFGHQENAKNEEIL 80 (184)
T ss_dssp GGGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCCSTTTTCSCHHHHH
T ss_pred eeeeEEEECCCCCEecHHHcCCCEEEEEEecccCCcchhhhHHHHHhhhhhcccc--eeEEEeeccccccccccchhhhh
Confidence 346654 765 78999999999999999999999999999999999999999999 9999999874 334555
Q ss_pred Hhhc
Q 011791 157 RDLG 160 (477)
Q Consensus 157 ~~~~ 160 (477)
++++
T Consensus 81 ~f~~ 84 (184)
T d2f8aa1 81 NSLK 84 (184)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 5553
|
| >d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.32 E-value=4.9e-13 Score=112.86 Aligned_cols=83 Identities=19% Similarity=0.372 Sum_probs=63.2
Q ss_pred ccCCCceecccC-CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccC
Q 011791 252 GKNGGKVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFG 330 (477)
Q Consensus 252 ~~~g~~~~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~ 330 (477)
.++++++.-.-. .+++|||.|||+||++|+.+.|.|.++++.|++.. ..+.++.+|.+.
T Consensus 16 ~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~--~~v~~~~~d~~~------------------ 75 (140)
T d2b5ea1 16 QLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANAT--SDVLIAKLDHTE------------------ 75 (140)
T ss_dssp EECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHC--SSCEEEEEEGGG------------------
T ss_pred EecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccc--cceEEEeeeccc------------------
Confidence 666766643221 36899999999999999999999999999998653 335555666543
Q ss_pred cchhHHHHHhcCCCCcceEEEECCCCcEEE
Q 011791 331 DARKASLSRKFKVSGIPMLVAIGPSGRTIT 360 (477)
Q Consensus 331 ~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~ 360 (477)
.++..|+|+++||++++ ++|+.+.
T Consensus 76 -----~~~~~~~v~~~Ptl~~f-~~g~~~~ 99 (140)
T d2b5ea1 76 -----NDVRGVVIEGYPTIVLY-PGGKKSE 99 (140)
T ss_dssp -----CCCSSCCCSSSSEEEEE-CCTTSCC
T ss_pred -----hhccccccccCCeEEEE-ECCEEcc
Confidence 35778999999999999 5676543
|
| >d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.29 E-value=5.7e-12 Score=98.79 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=56.6
Q ss_pred CCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcC
Q 011791 263 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 342 (477)
Q Consensus 263 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 342 (477)
+.|...++.|+++|||+|+.+.|.+++++..+ +++.+..++.+... +++..|+
T Consensus 13 l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~----~~i~~~~vd~~~~~-----------------------~l~~~~~ 65 (96)
T d1hyua4 13 IDGDFEFETYYSLSCHNCPDVVQALNLMAVLN----PRIKHTAIDGGTFQ-----------------------NEITERN 65 (96)
T ss_dssp CCSCEEEEEEECTTCSSHHHHHHHHHHHHHHC----TTEEEEEEETTTCH-----------------------HHHHHTT
T ss_pred cCCCeEEEEEECCCCcchHHHHHHHHHHHHhC----CceEEEEEecccch-----------------------HHHhhcc
Confidence 45778889999999999999999999987664 35888888777654 6899999
Q ss_pred CCCcceEEEECCCCcEEEe
Q 011791 343 VSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 343 v~~~Pt~~lid~~G~iv~~ 361 (477)
|+++||+++ +|+.+..
T Consensus 66 I~~vPt~~~---ng~~~~~ 81 (96)
T d1hyua4 66 VMGVPAVFV---NGKEFGQ 81 (96)
T ss_dssp CCSSSEEEE---TTEEEEE
T ss_pred cccccEEEE---CCEEEEe
Confidence 999999855 7887754
|
| >d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.29 E-value=1.9e-11 Score=105.32 Aligned_cols=136 Identities=19% Similarity=0.313 Sum_probs=86.4
Q ss_pred Cccee-ccCCCceecccCCCCEEEEEEeCCCCh-hhHhHhHHHHHHHHHHHhc-CCcEEEEEEeCCCC---hhHHHHHHh
Q 011791 247 LDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCP-PCRAFLPKLIDAYKKIKER-NESLEVVFISSDRD---QTSFDEFFK 320 (477)
Q Consensus 247 p~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~-~~~~~iv~i~~d~~---~~~~~~~~~ 320 (477)
+||.| |.+|+++++++++||++||+||.+||+ .|..+...+..+...+... ...+.++.++.+.. .+....+..
T Consensus 7 ~dF~l~d~~G~~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (169)
T d2b7ka1 7 GPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLS 86 (169)
T ss_dssp CCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHT
T ss_pred CCeEEEeCCCCEECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccccccCchhhhhhhhc
Confidence 58999 999999999999999999999999997 5666666777666666543 23566677666543 223333333
Q ss_pred cC--CCceeccCcchhHHHHHh----------------cCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCC-HHH
Q 011791 321 GM--PWLALPFGDARKASLSRK----------------FKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFT-EER 381 (477)
Q Consensus 321 ~~--~~~~~p~~~d~~~~l~~~----------------~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~-~~~ 381 (477)
.. .|............+... +.+...|+++|||++|+++.+... ..+ +..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~~~~-----------~~~~~~~ 155 (169)
T d2b7ka1 87 DFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGR-----------NYDEKTG 155 (169)
T ss_dssp TSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECT-----------TCCTTHH
T ss_pred cccccccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEEECC-----------CCCHHHH
Confidence 22 233333332222222222 345668999999999999987431 112 334
Q ss_pred HHHHHHHHHHHH
Q 011791 382 MKEIDGQYNEMA 393 (477)
Q Consensus 382 ~~~l~~~~~~~~ 393 (477)
.++|.+.|++++
T Consensus 156 ~~~I~e~ik~ll 167 (169)
T d2b7ka1 156 VDKIVEHVKSYV 167 (169)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHHh
Confidence 455666666554
|
| >d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Txnl5-like domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=2.1e-12 Score=105.46 Aligned_cols=80 Identities=19% Similarity=0.311 Sum_probs=63.0
Q ss_pred CCCCCEEEEEEecC-------CCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhH
Q 011791 102 DLEGKTIGLYFSMS-------SYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSR 174 (477)
Q Consensus 102 ~l~gk~vll~F~a~-------wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (477)
+.+||+|+|+|||+ ||+||+.+.|.+.++++.++++ +.++.|.+|+..+ +. +..
T Consensus 18 ~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~---~~~~~vdv~~~~~-~~---------------d~~ 78 (119)
T d1woua_ 18 QHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEG---CVFIYCQVGEKPY-WK---------------DPN 78 (119)
T ss_dssp TTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTT---EEEEEEECCCHHH-HH---------------CTT
T ss_pred HcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCc---eEEEEEECCCCcc-cc---------------hhh
Confidence 45789999999996 9999999999999999888654 8888898875332 11 122
Q ss_pred HHHHHHcCcccCCeEEEECCCCCccc
Q 011791 175 EKLARYFELSTLPTLVIIGPDGKTLH 200 (477)
Q Consensus 175 ~~l~~~~~v~~~P~~~lid~~G~i~~ 200 (477)
..+++.|+|.++||+++++..+++..
T Consensus 79 ~~l~~~~~V~~iPT~i~~~~g~~l~~ 104 (119)
T d1woua_ 79 NDFRKNLKVTAVPTLLKYGTPQKLVE 104 (119)
T ss_dssp CHHHHHHCCCSSSEEEETTSSCEEEG
T ss_pred hhHHHhCCeEEEEEEEEEECCeEEee
Confidence 45788999999999999986665554
|
| >d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=3.4e-12 Score=104.03 Aligned_cols=78 Identities=17% Similarity=0.229 Sum_probs=58.1
Q ss_pred CCCCCCEEEEEEecCCCccchhhHHHH---HHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHH
Q 011791 101 SDLEGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKL 177 (477)
Q Consensus 101 s~l~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l 177 (477)
++.+||+|+|+|||+||++|+.+.|.+ .++++.+.+ +.++.+.++.+. +....+
T Consensus 18 ~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~----~~~~~~~~~~~~-------------------~~~~~l 74 (117)
T d2fwha1 18 VEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD----TVLLQANVTAND-------------------AQDVAL 74 (117)
T ss_dssp HHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTT----SEEEEEECTTCC-------------------HHHHHH
T ss_pred HHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhccc----eEEEecccccch-------------------hHHHHH
Confidence 344689999999999999999999987 444444432 445555544332 234568
Q ss_pred HHHcCcccCCeEEEECCCCCcccc
Q 011791 178 ARYFELSTLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 178 ~~~~~v~~~P~~~lid~~G~i~~~ 201 (477)
++.|+|.++|+++++|++|+++..
T Consensus 75 ~~~~~v~~~Pt~~~~~~~G~~~~~ 98 (117)
T d2fwha1 75 LKHLNVLGLPTILFFDGQGQEHPQ 98 (117)
T ss_dssp HHHTTCCSSSEEEEECTTSCBCGG
T ss_pred HhhhehhhceEEEEEeCCCcEEec
Confidence 899999999999999999987653
|
| >d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.24 E-value=7e-12 Score=100.40 Aligned_cols=71 Identities=17% Similarity=0.287 Sum_probs=61.4
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+|+|+|+|||+||++|+.+.|.+.++.+++.+. +.++.|.+|... .+++.|+|.
T Consensus 19 ~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~d~~~-----------------------~l~~~~~V~ 72 (107)
T d1dbya_ 19 SVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK---LKCVKLNTDESP-----------------------NVASEYGIR 72 (107)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-----------------------HHHHHHTCC
T ss_pred CCcEEEEEECCCCCCccccChHHHHHHHhhccc---ceEEEEecccch-----------------------hHHHHhccc
Confidence 588999999999999999999999999888765 678888887553 378999999
Q ss_pred cCCeEEEECCCCCccccc
Q 011791 185 TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~ 202 (477)
++|+++++. +|+.+.+.
T Consensus 73 ~~Pt~~~~~-~G~~v~~~ 89 (107)
T d1dbya_ 73 SIPTIMVFK-GGKKCETI 89 (107)
T ss_dssp SSCEEEEES-SSSEEEEE
T ss_pred ceEEEEEEE-CCeEEEEE
Confidence 999999996 78887764
|
| >d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
Probab=99.24 E-value=6.7e-12 Score=100.15 Aligned_cols=72 Identities=18% Similarity=0.304 Sum_probs=61.8
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++|+++|+|||+||+||+.+.|.+.++.++++++ +.++.|.+|... .+++.|+|
T Consensus 16 ~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~V 69 (105)
T d1nw2a_ 16 GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVDENP-----------------------ETTSQFGI 69 (105)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTCH-----------------------HHHHHTTC
T ss_pred CCCcEEEEEECCCCCCcccccchhhhhhhhcCCc---eEEEEEECCCCc-----------------------ccHHHCCc
Confidence 3588999999999999999999999999999875 788888877553 37889999
Q ss_pred ccCCeEEEECCCCCccccc
Q 011791 184 STLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~ 202 (477)
.++|+++++. +|+.+.+.
T Consensus 70 ~~~Pt~~~~~-~G~~~~~~ 87 (105)
T d1nw2a_ 70 MSIPTLILFK-GGEPVKQL 87 (105)
T ss_dssp CBSSEEEEEE-TTEEEEEE
T ss_pred ceeeEEEEEE-CCEEEEEE
Confidence 9999999995 78877654
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=9.8e-13 Score=110.25 Aligned_cols=74 Identities=18% Similarity=0.427 Sum_probs=52.4
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHH-HhcC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLS-RKFK 342 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~-~~~~ 342 (477)
.||+|+|+|||+||++|+.+.|.+.+..+..+.. .+ +|.|++|.+.. ..+. ..+.
T Consensus 24 ~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~-~~--fv~v~vd~~~~---------------------~~~~~~~~~ 79 (135)
T d1sena_ 24 SGLPLMVIIHKSWCGACKALKPKFAESTEISELS-HN--FVMVNLEDEEE---------------------PKDEDFSPD 79 (135)
T ss_dssp HTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHH-TT--SEEEEEEGGGS---------------------CSCGGGCTT
T ss_pred cCCcEEEEEEecCCCCceecchhhhhhHHHHHhc-CC--cEEEeCCCCcC---------------------HHHHHHHhh
Confidence 3899999999999999999999987765443322 23 55566654321 0112 2234
Q ss_pred CCCcceEEEECCCCcEEEe
Q 011791 343 VSGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 343 v~~~Pt~~lid~~G~iv~~ 361 (477)
..++|+++++|++|+++..
T Consensus 80 ~~~~Pt~~~~d~~G~~~~~ 98 (135)
T d1sena_ 80 GGYIPRILFLDPSGKVHPE 98 (135)
T ss_dssp CSCSSEEEEECTTSCBCTT
T ss_pred cccceeEEEECCCCeEEEE
Confidence 5679999999999998765
|
| >d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.23 E-value=1.5e-11 Score=99.69 Aligned_cols=71 Identities=18% Similarity=0.321 Sum_probs=59.2
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++|+|+|||+||++|+.+.|.|.++.+.+.+ +.++.|..|.. ..+++.|+|+
T Consensus 28 ~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~----~~~~~vd~~~~-----------------------~~l~~~~~V~ 80 (114)
T d1xfla_ 28 KTLVVVDFTASWCGPCRFIAPFFADLAKKLPN----VLFLKVDTDEL-----------------------KSVASDWAIQ 80 (114)
T ss_dssp TCEEEEEEECTTCHHHHHHHHHHHHHHHHCSS----EEEEEEETTTS-----------------------HHHHHHTTCC
T ss_pred CCeEEEEEEcCCCCCccccccchhhhcccccc----cceeEEEeeec-----------------------eeecccccee
Confidence 58999999999999999999999999988753 66677766644 3478899999
Q ss_pred cCCeEEEECCCCCccccch
Q 011791 185 TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~~ 203 (477)
++||++++ .+|+.+.+..
T Consensus 81 ~~Pt~~~~-~~G~~v~~~~ 98 (114)
T d1xfla_ 81 AMPTFMFL-KEGKILDKVV 98 (114)
T ss_dssp SSSEEEEE-ETTEEEEEEE
T ss_pred eeEEEEEE-ECCEEEEEEe
Confidence 99999998 6888876643
|
| >d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.22 E-value=9.7e-12 Score=100.43 Aligned_cols=73 Identities=19% Similarity=0.271 Sum_probs=61.3
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.+|+|+|+|||+||++|+.+.|.|.++.++++++ +.++.|++|.. ..+++.|+|
T Consensus 23 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~---v~~~~vd~d~~-----------------------~~l~~~~~v 76 (112)
T d1ep7a_ 23 EHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGK---VIFLKVDVDAV-----------------------AAVAEAAGI 76 (112)
T ss_dssp HTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTT-----------------------HHHHHHHTC
T ss_pred cCCeEEEEEEcCCcCCCcccchhhhhhhhcccce---EEEEEeecccc-----------------------ccccccccc
Confidence 3588999999999999999999999999999764 77777777654 347889999
Q ss_pred ccCCeEEEECCCCCccccch
Q 011791 184 STLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~~ 203 (477)
+++||++++. +|+.+.+..
T Consensus 77 ~~~Pt~~~~~-~G~~v~~~~ 95 (112)
T d1ep7a_ 77 TAMPTFHVYK-DGVKADDLV 95 (112)
T ss_dssp CBSSEEEEEE-TTEEEEEEE
T ss_pred cCCCEEEEEE-CCEEEEEEe
Confidence 9999998884 888776653
|
| >d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=1.1e-11 Score=99.49 Aligned_cols=71 Identities=18% Similarity=0.340 Sum_probs=59.9
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+|+|+|+|||+||+||+.+.|.+.++..++..+ +.++.+.+|.+. .+++.|+|.
T Consensus 20 ~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~vd~d~~~-----------------------~l~~~~~v~ 73 (108)
T d2trxa_ 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNP-----------------------GTAPKYGIR 73 (108)
T ss_dssp SSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTCT-----------------------THHHHTTCC
T ss_pred CCcEEEEEECCCCCCccccCcHHHHHHHHhhcc---eeeeeccccchh-----------------------hHHHHhCCC
Confidence 589999999999999999999999998887654 788888877543 378899999
Q ss_pred cCCeEEEECCCCCccccc
Q 011791 185 TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~ 202 (477)
++||++++. +|+.+.+.
T Consensus 74 ~~PT~~~~~-~G~~v~~~ 90 (108)
T d2trxa_ 74 GIPTLLLFK-NGEVAATK 90 (108)
T ss_dssp SSSEEEEEE-TTEEEEEE
T ss_pred cEEEEEEEE-CCEEEEEE
Confidence 999998884 88877654
|
| >d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.21 E-value=7.7e-12 Score=112.51 Aligned_cols=119 Identities=14% Similarity=0.164 Sum_probs=92.6
Q ss_pred ccCcCCCcee-cCC-CCeEecCCC-CCCEEEEEEe-cCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCC--HHHH
Q 011791 82 LTSHSRDFVI-SSD-GRKISVSDL-EGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE--EESF 155 (477)
Q Consensus 82 ~g~~~p~fl~-~~~-g~~v~ls~l-~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~--~~~~ 155 (477)
+|.++|+|.+ +.+ +..++++++ +||+++|+|+ +.||+.|..++..+++.++++++.| ++|++||.|+. ...|
T Consensus 4 iGd~aPdF~l~~~~~~g~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~--~~vigiS~Ds~~sh~~w 81 (219)
T d1xcca_ 4 LGATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLN--CKLIGFSCNSKESHDKW 81 (219)
T ss_dssp TTCBCCCCEECBTTCSSCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCHHHHHHH
T ss_pred CCCCCCCcEeeccCCCCcEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccc--eEEEeecCccHhHHhHH
Confidence 6899999976 343 236899985 8999999999 8899999999999999999999998 99999999964 2345
Q ss_pred HHhhc---CCCCccccCCchhHHHHHHHcCcc------------cCCeEEEECCCCCccccc
Q 011791 156 KRDLG---SMPWLALPFKDKSREKLARYFELS------------TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 156 ~~~~~---~~~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~i~~~~ 202 (477)
.+..+ ...-+.+|...+...++++.||+- ...+++|||++|+|.+..
T Consensus 82 ~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~ 143 (219)
T d1xcca_ 82 IEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATV 143 (219)
T ss_dssp HHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEE
T ss_pred hhhhHhhcccCCCCcccccccccHHHHHhCCcccccccCcccceeeeeeEEEcCcceEEEEE
Confidence 44432 122244555556667899999981 246899999999987654
|
| >d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Windbeutel, N-terminal domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.21 E-value=4.3e-11 Score=98.07 Aligned_cols=109 Identities=7% Similarity=0.038 Sum_probs=72.3
Q ss_pred cCCCceecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcc
Q 011791 253 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDA 332 (477)
Q Consensus 253 ~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d 332 (477)
++..++.----+.+.+||.|||+||++|+. |.+.+++++++....++.+..|.++... ..
T Consensus 7 L~~~nFd~~v~~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~------------------~~ 66 (122)
T d2c0ga2 7 LDELSFEKTVERFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYG------------------EL 66 (122)
T ss_dssp CCTTTHHHHHTTSSEEEEEEEESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSST------------------TC
T ss_pred cChHhHHHHHhcCCcEEEEEECCCCCcccC--HHHHHHHHHHHHhCCCeEEEeccccccc------------------cc
Confidence 344444322234689999999999999994 9999999998766566777777765321 01
Q ss_pred hhHHHHHhcCC--CCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHH
Q 011791 333 RKASLSRKFKV--SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMA 393 (477)
Q Consensus 333 ~~~~l~~~~~v--~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 393 (477)
.+.++++.|+| +++||++++..++....... ..| ++..+.|.+.+++..
T Consensus 67 ~n~~l~~~~~i~~~~~PTi~~f~~g~~~~~~~~-----~~g-------~rt~~~l~~fv~~~~ 117 (122)
T d2c0ga2 67 ENKALGDRYKVDDKNFPSIFLFKGNADEYVQLP-----SHV-------DVTLDNLKAFVSANT 117 (122)
T ss_dssp TTHHHHHHTTCCTTSCCEEEEESSSSSSEEECC-----TTS-------CCCHHHHHHHHHHHS
T ss_pred cCHHHHHHhhcccCCCCcEEEEeCCcccccccc-----cCC-------CCCHHHHHHHHHHhc
Confidence 14579999988 58999999965443322211 122 233567777777654
|
| >d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]
Probab=99.21 E-value=1.1e-11 Score=98.77 Aligned_cols=71 Identities=15% Similarity=0.294 Sum_probs=60.6
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+|+|+|+|||+||++|+.+.|.+.++.+++.++ +.++.|..|.+. .+++.|+|+
T Consensus 17 ~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~---~~~~~v~~d~~~-----------------------~l~~~~~V~ 70 (104)
T d1fb6a_ 17 EVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLNTDEAP-----------------------GIATQYNIR 70 (104)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-----------------------HHHHHTTCC
T ss_pred CCcEEEEEEcCccCCccccCchhHHHHHhhcCc---cceeEEecccch-----------------------hhhhhccee
Confidence 478999999999999999999999999999776 567777777553 478999999
Q ss_pred cCCeEEEECCCCCccccc
Q 011791 185 TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~ 202 (477)
++||++++ ++|+.+.+.
T Consensus 71 ~~Pt~~~~-~~G~~v~~~ 87 (104)
T d1fb6a_ 71 SIPTVLFF-KNGERKESI 87 (104)
T ss_dssp SSSEEEEE-ETTEEEEEE
T ss_pred eeeEEEEE-EcCeEEEEE
Confidence 99999998 488877654
|
| >d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]
Probab=99.21 E-value=1.6e-11 Score=99.35 Aligned_cols=72 Identities=21% Similarity=0.387 Sum_probs=60.0
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.+|+|+|+|||+||+||+.+.|.|.++.+++.+ +.++.|..|.. ..+++.|+|
T Consensus 25 ~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~----~~~~~vd~d~~-----------------------~~l~~~~~I 77 (113)
T d1ti3a_ 25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN----VTFLKVDVDEL-----------------------KAVAEEWNV 77 (113)
T ss_dssp SSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSS----EEEEEEETTTC-----------------------HHHHHHHHC
T ss_pred CCCEEEEEEEcCccccchhhhhhhhhhhccCCC----ceEEeeeeecc-----------------------ccccccCee
Confidence 468999999999999999999999999988743 66777777654 347889999
Q ss_pred ccCCeEEEECCCCCccccch
Q 011791 184 STLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~~ 203 (477)
+++||++++. +|+.+.+..
T Consensus 78 ~~~Pt~~~~k-~G~~v~~~~ 96 (113)
T d1ti3a_ 78 EAMPTFIFLK-DGKLVDKTV 96 (113)
T ss_dssp SSTTEEEEEE-TTEEEEEEE
T ss_pred cccceEEEEE-CCEEEEEEc
Confidence 9999999995 898877654
|
| >d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.21 E-value=2.6e-11 Score=99.78 Aligned_cols=102 Identities=9% Similarity=0.031 Sum_probs=67.1
Q ss_pred ccCCCceecccCCCCEEEEEEeCCCChhhH------hHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCc
Q 011791 252 GKNGGKVPVSDLAGKTILLYFSAHWCPPCR------AFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWL 325 (477)
Q Consensus 252 ~~~g~~~~l~~~~gk~vll~F~a~wC~~C~------~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~ 325 (477)
.++.+++.-.-.+++.++|.|||+||++|. .+.+.+..+++.++.. ++.+..|+++...
T Consensus 15 ~L~~~nf~~~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~--~v~~a~Vd~~~~~------------- 79 (124)
T d1a8ya1 15 NVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDK--GVGFGLVDSEKDA------------- 79 (124)
T ss_dssp ECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGG--TEEEEEEETTTSH-------------
T ss_pred ECCHHHHHHHHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccC--CeEEEEEEeeccc-------------
Confidence 444444432222468899999999999753 3334444444444433 5777777666554
Q ss_pred eeccCcchhHHHHHhcCCCCcceEEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHHHHHHHHHc
Q 011791 326 ALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAK 394 (477)
Q Consensus 326 ~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 394 (477)
.+++.|+|+++||++++ ++|+++...| .++.+.|.+.+.++++
T Consensus 80 ----------~l~~~~~I~~yPTi~~f-~~g~~~~y~G---------------~r~~~~l~~fi~~~l~ 122 (124)
T d1a8ya1 80 ----------AVAKKLGLTEEDSIYVF-KEDEVIEYDG---------------EFSADTLVEFLLDVLE 122 (124)
T ss_dssp ----------HHHHTTTCCSTTCEEEE-ESSSEEECCS---------------CCSHHHHHHHHHHHHS
T ss_pred ----------chhhccccccCCcEEEe-ccCccEEeeC---------------CCCHHHHHHHHHHhcC
Confidence 68999999999999999 5788775433 2234667777777664
|
| >d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Anabaena sp., pcc 7120 [TaxId: 1167]
Probab=99.20 E-value=1.6e-11 Score=98.50 Aligned_cols=71 Identities=14% Similarity=0.300 Sum_probs=60.9
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++++|+|||+||++|+.+.|.+.++.+++.+. +.++.|.+|.+. .+++.|+|+
T Consensus 20 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~d~~~-----------------------~l~~~~~I~ 73 (108)
T d1thxa_ 20 EQPVLVYFWASWCGPCQLMSPLINLAANTYSDR---LKVVKLEIDPNP-----------------------TTVKKYKVE 73 (108)
T ss_dssp SSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEESTTCH-----------------------HHHHHTTCC
T ss_pred CCcEEEEEECCCCCCccccchHHHHHHHhcCCc---ceeceecccccH-----------------------HHHHHhccc
Confidence 478999999999999999999999999998775 778888877553 478999999
Q ss_pred cCCeEEEECCCCCccccc
Q 011791 185 TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~ 202 (477)
++||++++. +|+.+.+.
T Consensus 74 ~~Pt~~~~~-~g~~v~~~ 90 (108)
T d1thxa_ 74 GVPALRLVK-GEQILDST 90 (108)
T ss_dssp SSSEEEEEE-TTEEEEEE
T ss_pred CCCEEEEEE-CCEEEEEE
Confidence 999999996 78877654
|
| >d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=2e-11 Score=97.34 Aligned_cols=71 Identities=18% Similarity=0.254 Sum_probs=58.5
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+|+|+|+|||+||+||+.+.|.|.++.+.+.+ +.++-|..|... .+++.|+|+
T Consensus 20 ~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~----~~~~~vd~d~~~-----------------------~~~~~~~V~ 72 (105)
T d2ifqa1 20 DKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDDCQ-----------------------DVASECEVK 72 (105)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTCH-----------------------HHHHHTTCC
T ss_pred CCEEEEEEEcCCccchhhhhhhhhhhcccccc----ceeeecccccCH-----------------------hHHHHcCce
Confidence 47899999999999999999999999988864 345666666543 377899999
Q ss_pred cCCeEEEECCCCCccccch
Q 011791 185 TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~~ 203 (477)
++||++++ ++|+.+.+..
T Consensus 73 ~~Pt~~~~-~~G~~v~~~~ 90 (105)
T d2ifqa1 73 CMPTFQFF-KKGQKVGEFS 90 (105)
T ss_dssp BSSEEEEE-ETTEEEEEEE
T ss_pred EEEEEEEE-ECCEEEEEEe
Confidence 99999999 5898887653
|
| >d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=99.18 E-value=4.9e-12 Score=102.86 Aligned_cols=67 Identities=21% Similarity=0.422 Sum_probs=50.0
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCC--cEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhc
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNE--SLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 341 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~--~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 341 (477)
.+|++||+|||+||++|+++.|.+.++++.+..... .+.+.....+ .+...+
T Consensus 19 ~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~ 72 (116)
T d2djja1 19 DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDAT--------------------------ANDVPD 72 (116)
T ss_dssp TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETT--------------------------TSCCSS
T ss_pred CCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccc--------------------------hhhhcc
Confidence 368999999999999999999999999999976421 1222222221 234568
Q ss_pred CCCCcceEEEECCCCc
Q 011791 342 KVSGIPMLVAIGPSGR 357 (477)
Q Consensus 342 ~v~~~Pt~~lid~~G~ 357 (477)
+|+++||++++ ++|+
T Consensus 73 ~v~~~Pti~~f-~~g~ 87 (116)
T d2djja1 73 EIQGFPTIKLY-PAGA 87 (116)
T ss_dssp CCSSSSEEEEE-CSSC
T ss_pred cccCCCEEEEE-ECCc
Confidence 99999999999 5554
|
| >d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MJ0307, thioredoxin/glutaredoxin-like protein species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.17 E-value=2.3e-11 Score=93.02 Aligned_cols=68 Identities=18% Similarity=0.207 Sum_probs=54.0
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+|+.+++|||+||+||+.+.|.+.++.+.+... +.++.+..|... .+++.|+|.
T Consensus 2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~~~~d~~~-----------------------~la~~~~V~ 55 (85)
T d1fo5a_ 2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDA---VEVEYINVMENP-----------------------QKAMEYGIM 55 (85)
T ss_dssp CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSS---EEEEEEESSSSC-----------------------CTTTSTTTC
T ss_pred CceEEEEEECCCCcChHhhhhhccccccccccc---cccccccccccc-----------------------cccccCCce
Confidence 488899999999999999999999999888664 666666666432 256789999
Q ss_pred cCCeEEEECCCCCcc
Q 011791 185 TLPTLVIIGPDGKTL 199 (477)
Q Consensus 185 ~~P~~~lid~~G~i~ 199 (477)
++||++ ++.+|+++
T Consensus 56 ~~Pt~~-i~~~g~~~ 69 (85)
T d1fo5a_ 56 AVPTIV-INGDVEFI 69 (85)
T ss_dssp CSSEEE-ETTEEECC
T ss_pred EeeEEE-EECCcEEE
Confidence 999975 56677643
|
| >d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=2.2e-11 Score=97.35 Aligned_cols=72 Identities=11% Similarity=0.149 Sum_probs=59.7
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
.+|.++|+|||+||+||+.+.|.|.++.+++++ +.++.|.+|.. ..+++.|+|
T Consensus 20 ~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~----~~f~~vd~d~~-----------------------~~l~~~~~v 72 (107)
T d1gh2a_ 20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ----AVFLEVDVHQC-----------------------QGTAATNNI 72 (107)
T ss_dssp TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTS-----------------------HHHHHHTTC
T ss_pred CCCEEEEEEECCCCCCccccchhhhcccccccc----ccccccccccc-----------------------hhhhhhcCc
Confidence 357899999999999999999999999998864 56666766654 347889999
Q ss_pred ccCCeEEEECCCCCccccch
Q 011791 184 STLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~~ 203 (477)
.++|+++++ ++|+.+.+..
T Consensus 73 ~~~Pt~~~~-~~G~~v~~~~ 91 (107)
T d1gh2a_ 73 SATPTFQFF-RNKVRIDQYQ 91 (107)
T ss_dssp CSSSEEEEE-ETTEEEEEEE
T ss_pred eeceEEEEE-ECCEEEEEEe
Confidence 999999999 5898877653
|
| >d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: spliceosomal protein U5-15Kd domain: spliceosomal protein U5-15Kd species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=4.4e-11 Score=99.72 Aligned_cols=71 Identities=15% Similarity=0.218 Sum_probs=60.9
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+|+|+|+|||+||++|+.+.|.|.++.++|++. +.++.|.+|..++ +++.|+|.
T Consensus 22 ~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~---v~~~~VDvd~~~~-----------------------la~~~~I~ 75 (137)
T d1qgva_ 22 DRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF---AVIYLVDITEVPD-----------------------FNKMYELY 75 (137)
T ss_dssp SSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTCCT-----------------------TTTSSCSC
T ss_pred CCEEEEEEECCCCccchhcChHHHHHHHHhhcc---ceEEEeeccccch-----------------------hhhhcCee
Confidence 589999999999999999999999999999865 7888888886643 67899999
Q ss_pred cCCeEEEECCCCCccccc
Q 011791 185 TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~ 202 (477)
++||++++. +|+.+..+
T Consensus 76 ~~PT~~~f~-~g~~i~~~ 92 (137)
T d1qgva_ 76 DPCTVMFFF-RNKHIMID 92 (137)
T ss_dssp SSCEEEEEE-TTEEEEEE
T ss_pred eEEEEEEEe-CCcEEEEE
Confidence 999999995 77766543
|
| >d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Trypanosoma brucei [TaxId: 5691]
Probab=99.14 E-value=2.7e-11 Score=97.90 Aligned_cols=71 Identities=13% Similarity=0.212 Sum_probs=60.0
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++++|+|||+||+||+.+.|.|.++.+++.+ +.++.|..|.. ..+++.|+|.
T Consensus 26 ~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~----v~~~~vd~d~~-----------------------~~l~~~~~V~ 78 (113)
T d1r26a_ 26 DILTVAWFTAVWCGPCKTIERPMEKIAYEFPT----VKFAKVDADNN-----------------------SEIVSKCRVL 78 (113)
T ss_dssp SSCEEEEEECTTCHHHHHTHHHHHHHHHHCTT----SEEEEEETTTC-----------------------HHHHHHTTCC
T ss_pred CCeEEEEEECCCCccchhhceecccccccccc----ccccccccccc-----------------------hhhHHHcccc
Confidence 47899999999999999999999999998852 77777877754 3478999999
Q ss_pred cCCeEEEECCCCCccccch
Q 011791 185 TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~~ 203 (477)
++||++++ ++|+.+.+..
T Consensus 79 ~~Pt~~~~-~~G~~v~~~~ 96 (113)
T d1r26a_ 79 QLPTFIIA-RSGKMLGHVI 96 (113)
T ss_dssp SSSEEEEE-ETTEEEEEEE
T ss_pred CCCEEEEE-ECCEEEEEEe
Confidence 99999988 5898877654
|
| >d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]
Probab=99.13 E-value=4.4e-11 Score=96.44 Aligned_cols=72 Identities=14% Similarity=0.235 Sum_probs=59.1
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+|+|+|+||++||+||+.+.|.|.++.+++.+ +.++.|..|.. ...+++.|+|+
T Consensus 25 ~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~----v~~~~vd~~~~----------------------~~~l~~~~~V~ 78 (112)
T d1f9ma_ 25 DKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD----VIFLKLDCNQE----------------------NKTLAKELGIR 78 (112)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSST----------------------THHHHHHHCCS
T ss_pred CCEEEEEEEcCCCcchHHHHHHHhhhcccccc----ceeeccccccc----------------------chhhHhheeec
Confidence 47899999999999999999999999999864 45666665532 14578999999
Q ss_pred cCCeEEEECCCCCccccch
Q 011791 185 TLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~~ 203 (477)
++|+++++ ++|+.+.+..
T Consensus 79 ~~Pt~~~~-k~G~~v~~~~ 96 (112)
T d1f9ma_ 79 VVPTFKIL-KENSVVGEVT 96 (112)
T ss_dssp SSSEEEEE-ETTEEEEEEE
T ss_pred cCCEEEEE-ECCEEEEEEe
Confidence 99999999 5899887654
|
| >d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.13 E-value=9.6e-11 Score=100.79 Aligned_cols=116 Identities=17% Similarity=0.219 Sum_probs=77.4
Q ss_pred CCce-ecCCCCeEecCCCCCCEEEEEEecCCCc-cchhhHHHHHHHHHHHhcC-CCcEEEEEEEcCCC---HHHHHHhhc
Q 011791 87 RDFV-ISSDGRKISVSDLEGKTIGLYFSMSSYK-ASAEFTPRLVEVYEKLKGK-GESFEIVLISLDDE---EESFKRDLG 160 (477)
Q Consensus 87 p~fl-~~~~g~~v~ls~l~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~-g~~~~vv~is~D~~---~~~~~~~~~ 160 (477)
+||. .|.+|+++++++++||+++|+||.+||+ .|......+..++..+... ...+.+++++.+.. .+....+..
T Consensus 7 ~dF~l~d~~G~~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (169)
T d2b7ka1 7 GPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLS 86 (169)
T ss_dssp CCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHT
T ss_pred CCeEEEeCCCCEECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccccccCchhhhhhhhc
Confidence 5784 5999999999999999999999999996 5666666666666655432 22366677766543 233333333
Q ss_pred C--CCCccccCCchhHHHHHHHc----------------CcccCCeEEEECCCCCccccc
Q 011791 161 S--MPWLALPFKDKSREKLARYF----------------ELSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 161 ~--~~~~~~~~~~~~~~~l~~~~----------------~v~~~P~~~lid~~G~i~~~~ 202 (477)
. ..|..+.........+...| .+.+.|+++|||++|+++...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~~ 146 (169)
T d2b7ka1 87 DFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDAL 146 (169)
T ss_dssp TSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEE
T ss_pred cccccccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEEE
Confidence 2 23444444433333333333 456789999999999999764
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.10 E-value=4.7e-13 Score=116.41 Aligned_cols=77 Identities=21% Similarity=0.338 Sum_probs=59.8
Q ss_pred ecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHH
Q 011791 259 PVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLS 338 (477)
Q Consensus 259 ~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~ 338 (477)
.+++++++.++|.||++|||+|+++.|.|++++++++ ++.+..|+.|.+. +..
T Consensus 48 ~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~----~~~~~~i~~d~~~-----------------------~~~ 100 (166)
T d1z6na1 48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP----NIELAIISKGRAE-----------------------DDL 100 (166)
T ss_dssp HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT----TEEEEEECHHHHH-----------------------HHT
T ss_pred HHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC----CCcEEEEECccCH-----------------------HHH
Confidence 3456779999999999999999999999999988865 4677778776443 334
Q ss_pred Hhc---CCCCcceEEEECCCCcEEEec
Q 011791 339 RKF---KVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 339 ~~~---~v~~~Pt~~lid~~G~iv~~~ 362 (477)
+.| +...+|.++++|.++..+...
T Consensus 101 ~~~~~~~~~~~p~~~~~d~~~~~~~~~ 127 (166)
T d1z6na1 101 RQRLALERIAIPLVLVLDEEFNLLGRF 127 (166)
T ss_dssp TTTTTCSSCCSSEEEEECTTCCEEEEE
T ss_pred HHHHHhccccccceeecCccchhcccc
Confidence 444 445778888888888877664
|
| >d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.10 E-value=9.2e-11 Score=93.03 Aligned_cols=70 Identities=10% Similarity=0.222 Sum_probs=58.1
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++++|+||++||++|+...|.+.++.+++.+ ..++.+..|... .+++.|+|.
T Consensus 18 ~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~----~~~~~vd~d~~~-----------------------~~~~~~~V~ 70 (103)
T d1syra_ 18 NELVIVDFFAEWCGPCKRIAPFYEECSKTYTK----MVFIKVDVDEVS-----------------------EVTEKENIT 70 (103)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTTH-----------------------HHHHHTTCC
T ss_pred CCcEEEEEeCCcccCcccccccchhhhhcccc----eEEEeeccccCc-----------------------ceeeeeeee
Confidence 47899999999999999999999999999864 456667666443 478899999
Q ss_pred cCCeEEEECCCCCccccc
Q 011791 185 TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~ 202 (477)
++||++++. +|+.+.+.
T Consensus 71 ~~Pt~i~~k-~G~~v~~~ 87 (103)
T d1syra_ 71 SMPTFKVYK-NGSSVDTL 87 (103)
T ss_dssp SSSEEEEEE-TTEEEEEE
T ss_pred cceEEEEEE-CCEEEEEE
Confidence 999998884 89887665
|
| >d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.07 E-value=1.7e-10 Score=92.12 Aligned_cols=78 Identities=9% Similarity=0.022 Sum_probs=57.7
Q ss_pred CCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhc-CCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 011791 102 DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKG-KGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180 (477)
Q Consensus 102 ~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~-~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (477)
.+.++++++.|||+||+||+.+.|.+.++...... .+..+.++.|..+.. ..+++.
T Consensus 12 ~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~-----------------------~~l~~~ 68 (107)
T d1a8la2 12 NIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEY-----------------------PEWADQ 68 (107)
T ss_dssp TCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGC-----------------------HHHHHH
T ss_pred hcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccc-----------------------cccccc
Confidence 34556778889999999999999999999766442 233466666665533 347899
Q ss_pred cCcccCCeEEEECCCCCccccch
Q 011791 181 FELSTLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 181 ~~v~~~P~~~lid~~G~i~~~~~ 203 (477)
|+|.++||+++ .++|+.+.+..
T Consensus 69 ~~V~~vPTi~i-~~~G~~~~~~~ 90 (107)
T d1a8la2 69 YNVMAVPKIVI-QVNGEDRVEFE 90 (107)
T ss_dssp TTCCSSCEEEE-EETTEEEEEEE
T ss_pred cccccceEEEE-EeCCeEEEEEE
Confidence 99999998755 56888776553
|
| >d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH807, thioredoxin/glutaredoxin-like protein species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.02 E-value=1.7e-10 Score=88.05 Aligned_cols=62 Identities=15% Similarity=0.127 Sum_probs=50.3
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
++.|||+||+||+.+.|.+.++.++|.++ +.++.|.+|.+.+ +++.|||.++|+
T Consensus 5 v~~F~a~wC~~C~~~~p~~~~l~~~~~~~---v~~~~vd~d~~~~-----------------------l~~~~~V~~~Pt 58 (85)
T d1nhoa_ 5 IEVFTSPTCPYCPMAIEVVDEAKKEFGDK---IDVEKIDIMVDRE-----------------------KAIEYGLMAVPA 58 (85)
T ss_dssp EEEESCSSSCCSTTHHHHHHHHHHHHCSS---CCEEEECTTTCGG-----------------------GGGGTCSSCSSE
T ss_pred EEEEECCCCcchHHHHHHHhhhccccccc---ccccccccccchh-----------------------hHHhcCceEeCE
Confidence 45699999999999999999999999764 7788887775543 678999999999
Q ss_pred EEEECCCCC
Q 011791 189 LVIIGPDGK 197 (477)
Q Consensus 189 ~~lid~~G~ 197 (477)
+++ +..|+
T Consensus 59 ~~~-~~~~~ 66 (85)
T d1nhoa_ 59 IAI-NGVVR 66 (85)
T ss_dssp EEE-TTTEE
T ss_pred EEE-CCcEE
Confidence 755 54443
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=3.6e-11 Score=99.67 Aligned_cols=72 Identities=10% Similarity=0.161 Sum_probs=59.9
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
+++|+|+|||+||++|+.+.|.|.++.+++.+.. +.+..|..|. ...+++.|+|.
T Consensus 36 ~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~--~~~a~Vd~d~-----------------------~~~la~~~~V~ 90 (132)
T d2hfda1 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYT--WQVAIADLEQ-----------------------SEAIGDRFGVF 90 (132)
T ss_dssp EEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSC--EEEEEECHHH-----------------------HHHHHHHHTCC
T ss_pred CcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCc--ceeEEEEecC-----------------------CHHHHHhhccC
Confidence 3689999999999999999999999999998765 6665565542 25689999999
Q ss_pred cCCeEEEECCCCCccccc
Q 011791 185 TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~ 202 (477)
++||++++ ++|+.+.+.
T Consensus 91 ~~PT~~~~-~~G~~v~~~ 107 (132)
T d2hfda1 91 RFPATLVF-TGGNYRGVL 107 (132)
T ss_dssp SCCEEEEE-ETTEEEEEE
T ss_pred cceeEEEE-EcCcEeeee
Confidence 99999999 688877655
|
| >d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: UAS domain domain: UBX domain-containing protein 7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=8.6e-10 Score=93.03 Aligned_cols=74 Identities=12% Similarity=0.259 Sum_probs=55.4
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHH---HHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHh
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 340 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 340 (477)
.+|++||+|+++||++|+.+.... .++.+.+.++ +-++.++.+... ...+.+.
T Consensus 41 ~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~---fV~~~v~~~~~e---------------------~~~~~~~ 96 (147)
T d2dlxa1 41 QNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREH---FIFWQVYHDSEE---------------------GQRYIQF 96 (147)
T ss_dssp HTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHT---EEEEEEESSSHH---------------------HHHHHHH
T ss_pred cCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhh---eeEeeecccchh---------------------hhhhhhh
Confidence 489999999999999999987644 4444445544 555556655432 3468899
Q ss_pred cCCCCcceEEEECC-CCcEEEe
Q 011791 341 FKVSGIPMLVAIGP-SGRTITK 361 (477)
Q Consensus 341 ~~v~~~Pt~~lid~-~G~iv~~ 361 (477)
|+|.++|++++||| +|+++..
T Consensus 97 y~v~~~Pti~~idp~~ge~v~~ 118 (147)
T d2dlxa1 97 YKLGDFPYVSILDPRTGQKLVE 118 (147)
T ss_dssp HTCCSSSEEEEECTTTCCCCEE
T ss_pred eecCceeEEEEEeCCCCeEecc
Confidence 99999999999997 5777654
|
| >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Salmonella typhimurium [TaxId: 90371]
Probab=99.00 E-value=6.6e-11 Score=96.30 Aligned_cols=74 Identities=14% Similarity=0.220 Sum_probs=52.9
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
..++|++.|||+|||+|+.+.|.|.++.++|.+.. +.++.|..|. ...+++.|||
T Consensus 29 ~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~--~~~~~Vd~d~-----------------------~~~l~~~~~V 83 (119)
T d2es7a1 29 GDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFD--WQVAVADLEQ-----------------------SEAIGDRFNV 83 (119)
T ss_dssp CSEEEEECCCSCC----CCHHHHHHHHHHTCTTSC--CEEEEECHHH-----------------------HHHHHHTTTC
T ss_pred CCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCc--eEEEEEECCC-----------------------CHHHHHhcCc
Confidence 34689999999999999999999999999997643 6555554442 2558999999
Q ss_pred ccCCeEEEECCCCCccccch
Q 011791 184 STLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~~ 203 (477)
+++|+++++ ++|+.+.+..
T Consensus 84 ~~~Pt~~~~-~~G~~v~~~~ 102 (119)
T d2es7a1 84 RRFPATLVF-TDGKLRGALS 102 (119)
T ss_dssp CSSSEEEEE-SCC----CEE
T ss_pred CcceEEEEE-EcCeEEEEee
Confidence 999999999 5898877653
|
| >d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.97 E-value=7.4e-10 Score=90.10 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=58.4
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+++.++|+||++||++|+.+.|.+.++.+.+++.+ +.++-|.+|.. ..+++.|+|
T Consensus 26 ~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~--v~~~~vd~~~~-----------------------~~l~~~~~v 80 (119)
T d2b5ea4 26 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKN--ITLAQIDCTEN-----------------------QDLCMEHNI 80 (119)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTT--CEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred cCCeEEEEEECCccCcccccchhhhhhhhhhcccc--eeeeeeeccch-----------------------HHHHHHhcc
Confidence 45789999999999999999999999999987654 77777777644 348899999
Q ss_pred ccCCeEEEECCCCCcc
Q 011791 184 STLPTLVIIGPDGKTL 199 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~ 199 (477)
.++|+++++ ++|+..
T Consensus 81 ~~~Pti~~f-~~g~~~ 95 (119)
T d2b5ea4 81 PGFPSLKIF-KNSDVN 95 (119)
T ss_dssp CSSSEEEEE-ETTCTT
T ss_pred ccCCeEEEE-ECCEEe
Confidence 999999999 566544
|
| >d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=3.1e-10 Score=92.53 Aligned_cols=70 Identities=19% Similarity=0.327 Sum_probs=56.0
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++|.++|+|||+||++|+.+.|.+.++.+.+++.+.++.++-|..|.. ..+++.|+|
T Consensus 23 ~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~i 79 (120)
T d1meka_ 23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEE-----------------------SDLAQQYGV 79 (120)
T ss_dssp HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTC-----------------------CSSHHHHTC
T ss_pred cCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccc-----------------------hhHHHHhCC
Confidence 368999999999999999999999999999987664455556665533 236788999
Q ss_pred ccCCeEEEECCCCC
Q 011791 184 STLPTLVIIGPDGK 197 (477)
Q Consensus 184 ~~~P~~~lid~~G~ 197 (477)
.++||++++. +|+
T Consensus 80 ~~~Pt~~~~~-~G~ 92 (120)
T d1meka_ 80 RGYPTIKFFR-NGD 92 (120)
T ss_dssp CSSSEEEEEE-SSC
T ss_pred ccCCeEEEEE-CCe
Confidence 9999998884 444
|
| >d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Bacterocin transport accessory protein Bta species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.95 E-value=6.7e-10 Score=89.77 Aligned_cols=75 Identities=17% Similarity=0.272 Sum_probs=58.1
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
++.++|+||++||++|+.+.|.|.++.++++.+ +.+|.+|.... ......+++.|+|.
T Consensus 26 ~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~-----v~~v~~~~~~~-----------------~~~~~~~~~~~~V~ 83 (115)
T d1zmaa1 26 KETATFFIGRKTCPYCRKFAGTLSGVVAETKAH-----IYFINSEEPSQ-----------------LNDLQAFRSRYGIP 83 (115)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCC-----CEEEETTCGGG-----------------HHHHHHHHHHHTCC
T ss_pred CCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhh-----hhhheeecccc-----------------cccccccccccccc
Confidence 578999999999999999999999998888543 45667664321 11224578899999
Q ss_pred cCCeEEEECCCCCccccc
Q 011791 185 TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 185 ~~P~~~lid~~G~i~~~~ 202 (477)
++||++++. +|+++.+.
T Consensus 84 ~~PTli~~~-~gk~~~~~ 100 (115)
T d1zmaa1 84 TVPGFVHIT-DGQINVRC 100 (115)
T ss_dssp SSCEEEEEE-TTEEEEEC
T ss_pred cccEEEEEE-CCEEEEEE
Confidence 999999996 78766544
|
| >d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.94 E-value=9e-10 Score=85.90 Aligned_cols=70 Identities=11% Similarity=0.064 Sum_probs=55.5
Q ss_pred CCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 011791 102 DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 181 (477)
Q Consensus 102 ~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (477)
+++|.+.++.|+++||++|+...|.|.++.+.+. ++.+..|..|..+ .+++.|
T Consensus 12 ~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~----~i~~~~vd~~~~~-----------------------~l~~~~ 64 (96)
T d1hyua4 12 DIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP----RIKHTAIDGGTFQ-----------------------NEITER 64 (96)
T ss_dssp HCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT----TEEEEEEETTTCH-----------------------HHHHHT
T ss_pred hcCCCeEEEEEECCCCcchHHHHHHHHHHHHhCC----ceEEEEEecccch-----------------------HHHhhc
Confidence 3457788899999999999999999999887643 2788778777554 378899
Q ss_pred CcccCCeEEEECCCCCcccc
Q 011791 182 ELSTLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 182 ~v~~~P~~~lid~~G~i~~~ 201 (477)
+|+++||+++ +|+.++.
T Consensus 65 ~I~~vPt~~~---ng~~~~~ 81 (96)
T d1hyua4 65 NVMGVPAVFV---NGKEFGQ 81 (96)
T ss_dssp TCCSSSEEEE---TTEEEEE
T ss_pred ccccccEEEE---CCEEEEe
Confidence 9999999865 6666543
|
| >d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=2e-09 Score=92.35 Aligned_cols=117 Identities=15% Similarity=0.215 Sum_probs=87.6
Q ss_pred ccCCCccee-c-cCCCceecccC-CCCEEEEEEe-CCCChhhH-hHhHHHHHHHHHHHhcCCcE-EEEEEeCCCChhHHH
Q 011791 243 VSGDLDFVV-G-KNGGKVPVSDL-AGKTILLYFS-AHWCPPCR-AFLPKLIDAYKKIKERNESL-EVVFISSDRDQTSFD 316 (477)
Q Consensus 243 ~~~~p~f~l-~-~~g~~~~l~~~-~gk~vll~F~-a~wC~~C~-~~~p~l~~l~~~~~~~~~~~-~iv~i~~d~~~~~~~ 316 (477)
+...|+|.+ + .+|++++++++ +||+|||+|| +.|++.|. .+.+.+.+.+..++++ +. .|+.+++| +....+
T Consensus 6 Gd~aP~f~l~~~~~~~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~--g~~~i~~~s~~-~~~~~~ 82 (161)
T d1hd2a_ 6 GDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAK--GVQVVACLSVN-DAFVTG 82 (161)
T ss_dssp TCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTT--TCCEEEEEESS-CHHHHH
T ss_pred CCcCCCeEEEecCCCcEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHc--CCeEEEEEecC-chhhhh
Confidence 556699998 5 55789999985 8999999999 78999995 5888899988988876 34 45667777 444555
Q ss_pred HHHhcCCC-ceeccCcchhHHHHHhcCCC----C--------cceEEEECCCCcEEEec
Q 011791 317 EFFKGMPW-LALPFGDARKASLSRKFKVS----G--------IPMLVAIGPSGRTITKE 362 (477)
Q Consensus 317 ~~~~~~~~-~~~p~~~d~~~~l~~~~~v~----~--------~Pt~~lid~~G~iv~~~ 362 (477)
.+...... ..++++.|.+..+++.||+. . .-.+++|+.+|+|+...
T Consensus 83 ~~~~~~~~~~~~~llsD~~~~~a~~~g~~~~~~~~g~~~~~~s~r~~~I~~~G~I~~~~ 141 (161)
T d1hd2a_ 83 EWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALN 141 (161)
T ss_dssp HHHHHTTCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEETTEEEEEE
T ss_pred hhhhhcccccccccccCCcceeeeeeeeeeccccCccccccEEeEEEEEECCCEEEEEE
Confidence 56554442 46888999999999999973 1 12345566799988764
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.89 E-value=1.2e-11 Score=107.20 Aligned_cols=79 Identities=14% Similarity=0.110 Sum_probs=56.1
Q ss_pred ecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHH
Q 011791 99 SVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLA 178 (477)
Q Consensus 99 ~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 178 (477)
.+.+++|+++++.||++||+||+.++|.|.++++.+++ +.+..|+.|.+.+...++...
T Consensus 48 ~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~~----~~~~~i~~d~~~~~~~~~~~~----------------- 106 (166)
T d1z6na1 48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPN----IELAIISKGRAEDDLRQRLAL----------------- 106 (166)
T ss_dssp HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTT----EEEEEECHHHHHHHTTTTTTC-----------------
T ss_pred HHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCCC----CcEEEEECccCHHHHHHHHHh-----------------
Confidence 34567889999999999999999999999999998764 667778776544322222111
Q ss_pred HHcCcccCCeEEEECCCCCcccc
Q 011791 179 RYFELSTLPTLVIIGPDGKTLHS 201 (477)
Q Consensus 179 ~~~~v~~~P~~~lid~~G~i~~~ 201 (477)
+...+|.+++.|.++.....
T Consensus 107 ---~~~~~p~~~~~d~~~~~~~~ 126 (166)
T d1z6na1 107 ---ERIAIPLVLVLDEEFNLLGR 126 (166)
T ss_dssp ---SSCCSSEEEEECTTCCEEEE
T ss_pred ---ccccccceeecCccchhccc
Confidence 23456777777777665443
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=3.3e-10 Score=94.37 Aligned_cols=75 Identities=24% Similarity=0.335 Sum_probs=50.2
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHH-HHcC
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLA-RYFE 182 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~ 182 (477)
+||+|+|+|||+||++|+.+.|.+.+..+..+. ..+| |.|.+|.+.+. .+. ..+.
T Consensus 24 ~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~-~~~f--v~v~vd~~~~~---------------------~~~~~~~~ 79 (135)
T d1sena_ 24 SGLPLMVIIHKSWCGACKALKPKFAESTEISEL-SHNF--VMVNLEDEEEP---------------------KDEDFSPD 79 (135)
T ss_dssp HTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHH-HTTS--EEEEEEGGGSC---------------------SCGGGCTT
T ss_pred cCCcEEEEEEecCCCCceecchhhhhhHHHHHh-cCCc--EEEeCCCCcCH---------------------HHHHHHhh
Confidence 579999999999999999999988765443332 2224 45555533210 001 1223
Q ss_pred cccCCeEEEECCCCCccccc
Q 011791 183 LSTLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 183 v~~~P~~~lid~~G~i~~~~ 202 (477)
...+|+++++|++|+++...
T Consensus 80 ~~~~Pt~~~~d~~G~~~~~~ 99 (135)
T d1sena_ 80 GGYIPRILFLDPSGKVHPEI 99 (135)
T ss_dssp CSCSSEEEEECTTSCBCTTC
T ss_pred cccceeEEEECCCCeEEEEe
Confidence 45689999999999988653
|
| >d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.79 E-value=6.1e-10 Score=93.34 Aligned_cols=65 Identities=15% Similarity=0.234 Sum_probs=51.7
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
++.|+|+|||+||++|+.+.|.+.++.+.|++.+ ..+.++.+|.+. .+++.|+|.
T Consensus 30 ~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~--~~v~~~~~d~~~-----------------------~~~~~~~v~ 84 (140)
T d2b5ea1 30 KKDVLVLYYAPWCGHCKRLAPTYQELADTYANAT--SDVLIAKLDHTE-----------------------NDVRGVVIE 84 (140)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHC--SSCEEEEEEGGG-----------------------CCCSSCCCS
T ss_pred CCCEEEEEEeccCcccchhHHHHHHHHHHHhccc--cceEEEeeeccc-----------------------hhccccccc
Confidence 5789999999999999999999999999998765 334445555332 135688999
Q ss_pred cCCeEEEECC
Q 011791 185 TLPTLVIIGP 194 (477)
Q Consensus 185 ~~P~~~lid~ 194 (477)
++|+++++..
T Consensus 85 ~~Ptl~~f~~ 94 (140)
T d2b5ea1 85 GYPTIVLYPG 94 (140)
T ss_dssp SSSEEEEECC
T ss_pred cCCeEEEEEC
Confidence 9999999963
|
| >d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Phosducin domain: Phosducin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.78 E-value=1.7e-09 Score=97.31 Aligned_cols=70 Identities=16% Similarity=0.181 Sum_probs=57.2
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
++.+|||.||++||++|+.+.|.|.+++.+|. ++.++.|+.+.. .+...|+|
T Consensus 119 ~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~----~vkF~ki~~~~~------------------------~~~~~~~i 170 (217)
T d2trcp_ 119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP----MVKFCKIRASNT------------------------GAGDRFSS 170 (217)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT----TSEEEEEEHHHH------------------------TCSTTSCG
T ss_pred CCCeEEEEEEcCCCCChhhhhhhHHHHhhhcc----cceEEEEccccc------------------------hhHHhCCC
Confidence 35689999999999999999999999988875 466666654421 13567999
Q ss_pred CCcceEEEECCCCcEEEec
Q 011791 344 SGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 344 ~~~Pt~~lid~~G~iv~~~ 362 (477)
.++||+++| ++|+++.+.
T Consensus 171 ~~lPtl~~y-k~G~~v~~~ 188 (217)
T d2trcp_ 171 DVLPTLLVY-KGGELISNF 188 (217)
T ss_dssp GGCSEEEEE-ETTEEEEEE
T ss_pred CCCCeEEEE-ECCEEEEEE
Confidence 999999999 899999874
|
| >d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=9.9e-09 Score=87.91 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=81.8
Q ss_pred ccCcCCCcee-c-CCCCeEecCCC-CCCEEEEEEe-cCCCccch-hhHHHHHHHHHHHhcCCCcE-EEEEEEcCCCHHH-
Q 011791 82 LTSHSRDFVI-S-SDGRKISVSDL-EGKTIGLYFS-MSSYKASA-EFTPRLVEVYEKLKGKGESF-EIVLISLDDEEES- 154 (477)
Q Consensus 82 ~g~~~p~fl~-~-~~g~~v~ls~l-~gk~vll~F~-a~wC~~C~-~~~p~l~~l~~~~~~~g~~~-~vv~is~D~~~~~- 154 (477)
+|..+|+|.+ + .+|+.++++++ +||.|+|+|+ +.|++.|. ..++.+.+.++.++++| . +|+.+|+|.....
T Consensus 5 VGd~aP~f~l~~~~~~~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g--~~~i~~~s~~~~~~~~ 82 (161)
T d1hd2a_ 5 VGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKG--VQVVACLSVNDAFVTG 82 (161)
T ss_dssp TTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTT--CCEEEEEESSCHHHHH
T ss_pred CCCcCCCeEEEecCCCcEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcC--CeEEEEEecCchhhhh
Confidence 6899999955 4 56899999985 8999999988 78999995 57888899999999887 5 4556777754332
Q ss_pred -HHHhhcCCCCccccCCchhHHHHHHHcCccc------------CCeEEEECCCCCccccch
Q 011791 155 -FKRDLGSMPWLALPFKDKSREKLARYFELST------------LPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 155 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~------------~P~~~lid~~G~i~~~~~ 203 (477)
|.+... .. ..++...+....+++.||+.. .-++++|+.+|+|.+..+
T Consensus 83 ~~~~~~~-~~-~~~~llsD~~~~~a~~~g~~~~~~~~g~~~~~~s~r~~~I~~~G~I~~~~v 142 (161)
T d1hd2a_ 83 EWGRAHK-AE-GKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNV 142 (161)
T ss_dssp HHHHHTT-CT-TTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEETTEEEEEEE
T ss_pred hhhhhcc-cc-cccccccCCcceeeeeeeeeeccccCccccccEEeEEEEEECCCEEEEEEE
Confidence 222222 11 233444455667888998621 234566666999877653
|
| >d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: N-terminal, Prx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=98.72 E-value=3.1e-08 Score=84.89 Aligned_cols=119 Identities=11% Similarity=0.141 Sum_probs=86.0
Q ss_pred hhccCCCccee-ccCC---CceecccC-CCCEEEEEEe-CCCChhhHhHhHHHHHHHH-HHHhcCCcEEEEEEeCCCChh
Q 011791 241 VLVSGDLDFVV-GKNG---GKVPVSDL-AGKTILLYFS-AHWCPPCRAFLPKLIDAYK-KIKERNESLEVVFISSDRDQT 313 (477)
Q Consensus 241 ~~~~~~p~f~l-~~~g---~~~~l~~~-~gk~vll~F~-a~wC~~C~~~~p~l~~l~~-~~~~~~~~~~iv~i~~d~~~~ 313 (477)
+.+...|+|++ ...| +.++++++ +||.|||+|+ +.+.+.|..+...+...+. .+..+. .-.++.++++ +..
T Consensus 2 ~~Gd~~Pdftl~~~~~~~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~~-~~~vv~~~s~-d~~ 79 (163)
T d1nm3a2 2 MEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYG-VDDILVVSVN-DTF 79 (163)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTT-CCEEEEEESS-CHH
T ss_pred CCCCCCCCeEEEEEcCCCceEEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhhc-ccceeeeecC-CHH
Confidence 34566799998 5545 47899995 9999999998 7899999998766555443 333332 2345666666 445
Q ss_pred HHHHHHhcCCCceeccCcchhHHHHHhcCCC-----------CcceEEEECCCCcEEEec
Q 011791 314 SFDEFFKGMPWLALPFGDARKASLSRKFKVS-----------GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 314 ~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~-----------~~Pt~~lid~~G~iv~~~ 362 (477)
..+++.+.+.-..++++.|....+++.|++. +...+++|| +|+|+...
T Consensus 80 ~~~a~~~~~~~~~~~llsD~~~~~~~~~g~~~~~~~~g~g~~s~R~~~Iid-dG~I~~~~ 138 (163)
T d1nm3a2 80 VMNAWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVK-NGVVEKMF 138 (163)
T ss_dssp HHHHHHHHTTCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEEE-TTEEEEEE
T ss_pred HHHHHhhhhccCceeeeccCChHHHHHhhhhccccccccccccceEEEEEe-CCEEEEEE
Confidence 5666666666677899999999999999862 345689997 99998764
|
| >d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like structure containing protein C330018D20Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.68 E-value=7.7e-09 Score=80.98 Aligned_cols=65 Identities=18% Similarity=0.352 Sum_probs=47.3
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCC
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 344 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~ 344 (477)
.-++|+.||++||++|+.+.+.|.++..+|. .+++ .+|.+. +.++.++|+++
T Consensus 15 ~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~-----~~~v--~vd~~~---------------------~~~l~~~y~~~ 66 (100)
T d1wjka_ 15 ALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI-----LQEV--DITLPE---------------------NSTWYERYKFD 66 (100)
T ss_dssp CCCEEEEEECSSCHHHHHHHHHTSTTSSSSE-----EEEE--ETTSST---------------------THHHHHHSSSS
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHhhhhcc-----eEEE--eccccc---------------------CHHHHHHhccc
Confidence 5678999999999999999999988755543 3344 444333 24789999987
Q ss_pred CcceEEEECCCCcEEEe
Q 011791 345 GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 345 ~~Pt~~lid~~G~iv~~ 361 (477)
+|+++ | +|+.+..
T Consensus 67 -VPvl~-i--dg~~~~~ 79 (100)
T d1wjka_ 67 -IPVFH-L--NGQFLMM 79 (100)
T ss_dssp -CSEEE-E--SSSEEEE
T ss_pred -CCcee-e--cCceEEe
Confidence 99765 4 5776654
|
| >d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Endoplasmic reticulum protein ERP29, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.66 E-value=9.2e-09 Score=83.80 Aligned_cols=70 Identities=16% Similarity=0.221 Sum_probs=49.8
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcE--EEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhc
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESL--EVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 341 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~--~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 341 (477)
+++++||.|+++||.+|.. |.+.++++++.+....+ +|-...+|.+. +..++..|
T Consensus 20 ~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~~~vd~~~---------------------n~~l~~~~ 76 (122)
T d1g7ea_ 20 KSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYGDKL---------------------NMELSEKY 76 (122)
T ss_dssp GSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEESCCTTSCH---------------------HHHHHHHH
T ss_pred hCCeEEEEEecCCcCcccC--HHHHHHHHHHHHHHHHhhhccceeeccccc---------------------cHHHHHhh
Confidence 4789999999999988864 88999999997653211 12222345444 35677765
Q ss_pred --CCCCcceEEEECCCCc
Q 011791 342 --KVSGIPMLVAIGPSGR 357 (477)
Q Consensus 342 --~v~~~Pt~~lid~~G~ 357 (477)
+|+++||++++ ++|+
T Consensus 77 ~~~I~~yPTi~~f-~~G~ 93 (122)
T d1g7ea_ 77 KLDKESYPVFYLF-RDGD 93 (122)
T ss_dssp TCSSSSCEEEEEE-ESSC
T ss_pred cccccCCCeEEEE-ecCc
Confidence 47899999999 5664
|
| >d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=98.64 E-value=8.3e-09 Score=83.14 Aligned_cols=63 Identities=13% Similarity=0.068 Sum_probs=46.5
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCc--EEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGES--FEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 182 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~--~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (477)
+|+++|+|||+||++|+.+.|.+.++.+.+...... +.+.....+ .+...++
T Consensus 20 ~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~ 73 (116)
T d2djja1 20 TKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDAT--------------------------ANDVPDE 73 (116)
T ss_dssp TSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETT--------------------------TSCCSSC
T ss_pred CCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccc--------------------------hhhhccc
Confidence 578999999999999999999999999999875311 122112111 1224678
Q ss_pred cccCCeEEEEC
Q 011791 183 LSTLPTLVIIG 193 (477)
Q Consensus 183 v~~~P~~~lid 193 (477)
|+++|+++++.
T Consensus 74 v~~~Pti~~f~ 84 (116)
T d2djja1 74 IQGFPTIKLYP 84 (116)
T ss_dssp CSSSSEEEEEC
T ss_pred ccCCCEEEEEE
Confidence 99999999884
|
| >d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Windbeutel, N-terminal domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.63 E-value=3.8e-08 Score=80.01 Aligned_cols=74 Identities=8% Similarity=0.160 Sum_probs=56.4
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
+.|.++|.|+|+||++|+. |.+.++++.+.+...++.+.-|.+++. .......+++.|++
T Consensus 18 ~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~------------------~~~~n~~l~~~~~i 77 (122)
T d2c0ga2 18 RFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDY------------------GELENKALGDRYKV 77 (122)
T ss_dssp TSSEEEEEEEESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSS------------------TTCTTHHHHHHTTC
T ss_pred cCCcEEEEEECCCCCcccC--HHHHHHHHHHHHhCCCeEEEecccccc------------------ccccCHHHHHHhhc
Confidence 3589999999999999994 999999998876555577777776531 11223568899988
Q ss_pred --ccCCeEEEECCCCC
Q 011791 184 --STLPTLVIIGPDGK 197 (477)
Q Consensus 184 --~~~P~~~lid~~G~ 197 (477)
+++||++++..++.
T Consensus 78 ~~~~~PTi~~f~~g~~ 93 (122)
T d2c0ga2 78 DDKNFPSIFLFKGNAD 93 (122)
T ss_dssp CTTSCCEEEEESSSSS
T ss_pred ccCCCCcEEEEeCCcc
Confidence 57999999976543
|
| >d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: UAS domain domain: UBX domain-containing protein 7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=6.1e-08 Score=81.35 Aligned_cols=73 Identities=18% Similarity=0.305 Sum_probs=52.8
Q ss_pred CCCEEEEEEecCCCccchhhHHHH---HHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (477)
++|+|+|+|+++||++|+.+.... .++.+.+.+. +.++.|+.|..+ ...+.+.
T Consensus 41 ~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~---fV~~~v~~~~~e---------------------~~~~~~~ 96 (147)
T d2dlxa1 41 QNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREH---FIFWQVYHDSEE---------------------GQRYIQF 96 (147)
T ss_dssp HTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHT---EEEEEEESSSHH---------------------HHHHHHH
T ss_pred cCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhh---eeEeeecccchh---------------------hhhhhhh
Confidence 579999999999999998775422 2344444433 666666665332 2457889
Q ss_pred cCcccCCeEEEECC-CCCccc
Q 011791 181 FELSTLPTLVIIGP-DGKTLH 200 (477)
Q Consensus 181 ~~v~~~P~~~lid~-~G~i~~ 200 (477)
|++.++|+++++|+ +|+++.
T Consensus 97 y~v~~~Pti~~idp~~ge~v~ 117 (147)
T d2dlxa1 97 YKLGDFPYVSILDPRTGQKLV 117 (147)
T ss_dssp HTCCSSSEEEEECTTTCCCCE
T ss_pred eecCceeEEEEEeCCCCeEec
Confidence 99999999999997 577654
|
| >d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Plant peroxiredoxin species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]
Probab=98.55 E-value=1.4e-07 Score=80.58 Aligned_cols=117 Identities=18% Similarity=0.256 Sum_probs=89.6
Q ss_pred ccCCCccee-c----cCCCceecccC-CCCEEEEEEe-CCCChhhH-hHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhH
Q 011791 243 VSGDLDFVV-G----KNGGKVPVSDL-AGKTILLYFS-AHWCPPCR-AFLPKLIDAYKKIKERNESLEVVFISSDRDQTS 314 (477)
Q Consensus 243 ~~~~p~f~l-~----~~g~~~~l~~~-~gk~vll~F~-a~wC~~C~-~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~ 314 (477)
+...|+|.| . ..+++++++++ +||+|||+|| +.|++.|. +..+...+..+.++.++ ..+|+.+++| +...
T Consensus 7 Gd~~Pdf~l~~~~~~~~~~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g-~~~v~~isvd-~~~~ 84 (162)
T d1tp9a1 7 GDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKG-VTEILCISVN-DPFV 84 (162)
T ss_dssp TCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTT-CCCEEEEESS-CHHH
T ss_pred CCCCCCeEEEeecCCCCceEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcC-Ccceeeeecc-chhh
Confidence 455699987 2 23467899874 9999999999 78999995 57788888788877652 3578889998 5567
Q ss_pred HHHHHhcCCC-ceeccCcchhHHHHHhcCCC-----------CcceEEEECCCCcEEEec
Q 011791 315 FDEFFKGMPW-LALPFGDARKASLSRKFKVS-----------GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 315 ~~~~~~~~~~-~~~p~~~d~~~~l~~~~~v~-----------~~Pt~~lid~~G~iv~~~ 362 (477)
.+++....+. ..++++.|....+++.||+. .--.+++|| +|+|+...
T Consensus 85 ~~~~~~~~~~~~~~~~lsD~~~~~~~~~g~~~~~~~~g~g~~~~R~tfiId-dg~I~~~~ 143 (162)
T d1tp9a1 85 MKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAAN 143 (162)
T ss_dssp HHHHHHTCTTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEE
T ss_pred hhhhhhhcccccccccccchhhHHHhhhhhccccccccCCcEEEEEEEEEE-CCEEEEEE
Confidence 7777776653 56888899999999999963 124678898 89988764
|
| >d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.40 E-value=2.2e-07 Score=75.55 Aligned_cols=69 Identities=10% Similarity=0.214 Sum_probs=48.3
Q ss_pred CCCEEEEEEecCCCccchhhHHHH-------HHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHH
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRL-------VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREK 176 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l-------~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (477)
+.+.++|.|||+||++| ...|.+ ..+.+.+.+.+ +.+.-|..+.+ ..
T Consensus 27 ~~~~~~V~FyapwC~~~-~~~~~~~~~~~~~~~~a~~~~~~~--v~~a~Vd~~~~-----------------------~~ 80 (124)
T d1a8ya1 27 KYEVLALLYHEPPEDDK-ASQRQFEMEELILELAAQVLEDKG--VGFGLVDSEKD-----------------------AA 80 (124)
T ss_dssp HCSEEEEEEECCCCSSH-HHHHHHHHHHHHHHHHHHHTGGGT--EEEEEEETTTS-----------------------HH
T ss_pred hCCeEEEEEECCCccch-hhhhHHHHHHHHHHHHHHHhccCC--eEEEEEEeecc-----------------------cc
Confidence 45789999999999864 344443 33334444444 77777776644 34
Q ss_pred HHHHcCcccCCeEEEECCCCCcc
Q 011791 177 LARYFELSTLPTLVIIGPDGKTL 199 (477)
Q Consensus 177 l~~~~~v~~~P~~~lid~~G~i~ 199 (477)
+++.|+|+++||++++. +|+.+
T Consensus 81 l~~~~~I~~yPTi~~f~-~g~~~ 102 (124)
T d1a8ya1 81 VAKKLGLTEEDSIYVFK-EDEVI 102 (124)
T ss_dssp HHHTTTCCSTTCEEEEE-SSSEE
T ss_pred hhhccccccCCcEEEec-cCccE
Confidence 88999999999999996 56554
|
| >d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Plant peroxiredoxin species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]
Probab=98.39 E-value=2.6e-07 Score=78.82 Aligned_cols=118 Identities=22% Similarity=0.222 Sum_probs=81.4
Q ss_pred ccCcCCCcee-----cCCCCeEecCCC-CCCEEEEEEe-cCCCccch-hhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHH
Q 011791 82 LTSHSRDFVI-----SSDGRKISVSDL-EGKTIGLYFS-MSSYKASA-EFTPRLVEVYEKLKGKGESFEIVLISLDDEEE 153 (477)
Q Consensus 82 ~g~~~p~fl~-----~~~g~~v~ls~l-~gk~vll~F~-a~wC~~C~-~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~ 153 (477)
+|..+|+|.+ +.++++++++++ +||.|+|+|+ +.+++.|. +..+.....++.++++|. .+|+.||+|+..
T Consensus 6 vGd~~Pdf~l~~~~~~~~~~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g~-~~v~~isvd~~~- 83 (162)
T d1tp9a1 6 VGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGV-TEILCISVNDPF- 83 (162)
T ss_dssp TTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTC-CCEEEEESSCHH-
T ss_pred CCCCCCCeEEEeecCCCCceEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcCC-cceeeeeccchh-
Confidence 6899999954 344678999885 9999999888 78999995 566777888888887762 468888988543
Q ss_pred HHHHhhcCCC-CccccCCchhHHHHHHHcCcc-----------cCCeEEEECCCCCccccc
Q 011791 154 SFKRDLGSMP-WLALPFKDKSREKLARYFELS-----------TLPTLVIIGPDGKTLHSN 202 (477)
Q Consensus 154 ~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~i~~~~ 202 (477)
....+..... ...++...+....+++.||+. .--..+||| +|+|.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~lsD~~~~~~~~~g~~~~~~~~g~g~~~~R~tfiId-dg~I~~~~ 143 (162)
T d1tp9a1 84 VMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAAN 143 (162)
T ss_dssp HHHHHHHTCTTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEE
T ss_pred hhhhhhhhcccccccccccchhhHHHhhhhhccccccccCCcEEEEEEEEEE-CCEEEEEE
Confidence 2333333222 123444445556688888862 124678889 89887754
|
| >d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: N-terminal, Prx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=98.18 E-value=9.6e-07 Score=75.27 Aligned_cols=120 Identities=10% Similarity=0.091 Sum_probs=74.7
Q ss_pred hccCcCCCcee-cCCC---CeEecCCC-CCCEEEEEEe-cCCCccchhhHHHHHHH-HHHHhcCCCcEEEEEEEcCCCHH
Q 011791 81 VLTSHSRDFVI-SSDG---RKISVSDL-EGKTIGLYFS-MSSYKASAEFTPRLVEV-YEKLKGKGESFEIVLISLDDEEE 153 (477)
Q Consensus 81 ~~g~~~p~fl~-~~~g---~~v~ls~l-~gk~vll~F~-a~wC~~C~~~~p~l~~l-~~~~~~~g~~~~vv~is~D~~~~ 153 (477)
+.|..+|+|.+ ...| +.++++++ +||.|+|+|+ +.+.+.|..+...+... ++....++. -+++.+++++..
T Consensus 2 ~~Gd~~Pdftl~~~~~~~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~~~-~~vv~~~s~d~~- 79 (163)
T d1nm3a2 2 MEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGV-DDILVVSVNDTF- 79 (163)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTC-CEEEEEESSCHH-
T ss_pred CCCCCCCCeEEEEEcCCCceEEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhhcc-cceeeeecCCHH-
Confidence 67999999955 3333 57999995 9999888776 77899999887654444 333444332 245555555432
Q ss_pred HHHHhhcCCCCccccCCchhHHHHHHHcCc-----------ccCCeEEEECCCCCccccch
Q 011791 154 SFKRDLGSMPWLALPFKDKSREKLARYFEL-----------STLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v-----------~~~P~~~lid~~G~i~~~~~ 203 (477)
......+.+.-..++...+....+++.||+ ......+|+| +|+|.+..+
T Consensus 80 ~~~a~~~~~~~~~~~llsD~~~~~~~~~g~~~~~~~~g~g~~s~R~~~Iid-dG~I~~~~v 139 (163)
T d1nm3a2 80 VMNAWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVK-NGVVEKMFI 139 (163)
T ss_dssp HHHHHHHHTTCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEEE-TTEEEEEEE
T ss_pred HHHHHhhhhccCceeeeccCChHHHHHhhhhccccccccccccceEEEEEe-CCEEEEEEE
Confidence 222232322223344444445567777775 2456788888 998877653
|
| >d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Phosducin domain: Phosducin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.03 E-value=9.1e-07 Score=79.05 Aligned_cols=71 Identities=14% Similarity=0.178 Sum_probs=54.7
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 183 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 183 (477)
++.+|+|+||++||++|+.+.|.|.++..+|.+ +.++-|..+ . ..+...|++
T Consensus 119 ~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~----vkF~ki~~~--~----------------------~~~~~~~~i 170 (217)
T d2trcp_ 119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM----VKFCKIRAS--N----------------------TGAGDRFSS 170 (217)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTT----SEEEEEEHH--H----------------------HTCSTTSCG
T ss_pred CCCeEEEEEEcCCCCChhhhhhhHHHHhhhccc----ceEEEEccc--c----------------------chhHHhCCC
Confidence 356899999999999999999999999998865 445555432 1 112356889
Q ss_pred ccCCeEEEECCCCCccccch
Q 011791 184 STLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 184 ~~~P~~~lid~~G~i~~~~~ 203 (477)
.++|+++++ ++|+++.+.+
T Consensus 171 ~~lPtl~~y-k~G~~v~~~v 189 (217)
T d2trcp_ 171 DVLPTLLVY-KGGELISNFI 189 (217)
T ss_dssp GGCSEEEEE-ETTEEEEEET
T ss_pred CCCCeEEEE-ECCEEEEEEE
Confidence 999999999 5898887654
|
| >d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.87 E-value=7.4e-05 Score=62.60 Aligned_cols=87 Identities=21% Similarity=0.369 Sum_probs=54.5
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeC--CC-Chh----------------HHHHHHhcCCC-
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS--DR-DQT----------------SFDEFFKGMPW- 324 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~--d~-~~~----------------~~~~~~~~~~~- 324 (477)
+|.+++.|+-+-||+|+++.|.+.++.+. ++.++++.. .. ... .+.........
T Consensus 26 ak~tIv~FsD~~CpyC~~~~~~l~~~~~~------~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 99 (156)
T d1eeja1 26 EKHVITVFTDITCGYCHKLHEQMADYNAL------GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVA 99 (156)
T ss_dssp CCEEEEEEECTTCHHHHHHHTTHHHHHHT------TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCC
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHHHhhcc------CceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccc
Confidence 68899999999999999999999887432 355555543 11 111 12222222211
Q ss_pred -ceeccCcchhHHHHHhcCCCCcceEEEECCCCcEE
Q 011791 325 -LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 359 (477)
Q Consensus 325 -~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv 359 (477)
.........+..+++.+||+|+|++++ .+|+++
T Consensus 100 ~~~~~~~i~~~~~la~~lgv~GTPt~~~--~nG~~v 133 (156)
T d1eeja1 100 PASCDVDIADHYALGVQLGVSGTPAVVL--SNGTLV 133 (156)
T ss_dssp CCCCSCCHHHHHHHHHHHTCCSSSEEEC--TTSCEE
T ss_pred hhhhcchHHHHHHHHHHcCCcCCCEEEE--eCCeEe
Confidence 111122345678899999999999765 368765
|
| >d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like structure containing protein C330018D20Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.82 E-value=6.1e-06 Score=63.92 Aligned_cols=63 Identities=13% Similarity=0.233 Sum_probs=42.3
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcc
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 184 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 184 (477)
.-++++.||++||++|....+.|.++... +.+..|.+|.+. ...+.+.|+++
T Consensus 15 ~~p~i~lft~~~C~~C~~a~~~L~~~~~~-------~~~~~v~vd~~~---------------------~~~l~~~y~~~ 66 (100)
T d1wjka_ 15 ALPVLTLFTKAPCPLCDEAKEVLQPYKDR-------FILQEVDITLPE---------------------NSTWYERYKFD 66 (100)
T ss_dssp CCCEEEEEECSSCHHHHHHHHHTSTTSSS-------SEEEEEETTSST---------------------THHHHHHSSSS
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHhhhh-------cceEEEeccccc---------------------CHHHHHHhccc
Confidence 34678889999999999888877665433 333344444332 24588899987
Q ss_pred cCCeEEEECCCCCcc
Q 011791 185 TLPTLVIIGPDGKTL 199 (477)
Q Consensus 185 ~~P~~~lid~~G~i~ 199 (477)
+|++++ +|+.+
T Consensus 67 -VPvl~i---dg~~~ 77 (100)
T d1wjka_ 67 -IPVFHL---NGQFL 77 (100)
T ss_dssp -CSEEEE---SSSEE
T ss_pred -CCceee---cCceE
Confidence 997654 45543
|
| >d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Endoplasmic reticulum protein ERP29, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.82 E-value=2.9e-05 Score=62.31 Aligned_cols=70 Identities=11% Similarity=0.233 Sum_probs=46.9
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC-
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE- 182 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 182 (477)
+++.++|.|+++||..|.. |.+.++.+.+.+... ..+--|.+.. .+......++..|+
T Consensus 20 ~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~~-~~~~~V~~~~------------------vd~~~n~~l~~~~~~ 78 (122)
T d1g7ea_ 20 KSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDD-LLVAEVGISD------------------YGDKLNMELSEKYKL 78 (122)
T ss_dssp GSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCSS-EEEEEEESCC------------------TTSCHHHHHHHHHTC
T ss_pred hCCeEEEEEecCCcCcccC--HHHHHHHHHHHHHHH-Hhhhccceee------------------ccccccHHHHHhhcc
Confidence 4589999999999988864 788899999887642 2222233311 11122355777765
Q ss_pred -cccCCeEEEECC
Q 011791 183 -LSTLPTLVIIGP 194 (477)
Q Consensus 183 -v~~~P~~~lid~ 194 (477)
|.++||+.++..
T Consensus 79 ~I~~yPTi~~f~~ 91 (122)
T d1g7ea_ 79 DKESYPVFYLFRD 91 (122)
T ss_dssp SSSSCEEEEEEES
T ss_pred cccCCCeEEEEec
Confidence 779999998863
|
| >d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Thiol:disulfide interchange protein DsbG, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.77 E-value=0.00015 Score=61.47 Aligned_cols=93 Identities=9% Similarity=0.089 Sum_probs=60.0
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCC---C-------------hhHHHHHHhcCCC----
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR---D-------------QTSFDEFFKGMPW---- 324 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~---~-------------~~~~~~~~~~~~~---- 324 (477)
.+.+|+.|+-+-||+|+++.+.+.++.++. ++.++++.+.- + +.....+......
T Consensus 36 a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~-----~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~ 110 (169)
T d1v58a1 36 APVIVYVFADPFCPYCKQFWQQARPWVDSG-----KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKL 110 (169)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHTT-----SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCC
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHhcc-----ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhcccc
Confidence 567899999999999999999987765432 47788776531 1 1111122211110
Q ss_pred ceeccC-------cchhHHHHHhcCCCCcceEEEECCCCcEEEec
Q 011791 325 LALPFG-------DARKASLSRKFKVSGIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 325 ~~~p~~-------~d~~~~l~~~~~v~~~Pt~~lid~~G~iv~~~ 362 (477)
...... .+.+..+++.+||+++|++++.|++|++....
T Consensus 111 ~~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~~~~ 155 (169)
T d1v58a1 111 NVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQAV 155 (169)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEEE
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEEec
Confidence 111111 12345678889999999999999999875543
|
| >d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.46 E-value=0.0002 Score=59.44 Aligned_cols=87 Identities=21% Similarity=0.310 Sum_probs=52.5
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeC--CC-ChhH----------------HHHHHhcC--C
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS--DR-DQTS----------------FDEFFKGM--P 323 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~--d~-~~~~----------------~~~~~~~~--~ 323 (477)
+|.+++.|+-+-||+|+++.+.+.++.+. +..++.+.. .. .... +....... .
T Consensus 26 ak~~I~~FsD~~CPyC~~~~~~l~~l~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~ 99 (150)
T d1t3ba1 26 EKHVVTVFMDITCHYCHLLHQQLKEYNDL------GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPK 99 (150)
T ss_dssp CSEEEEEEECTTCHHHHHHHTTHHHHHHT------TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCS
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHhcc------CceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhcccc
Confidence 68889999999999999999999887543 234444433 21 1110 11111110 0
Q ss_pred CceeccCcchhHHHHHhcCCCCcceEEEECCCCcEE
Q 011791 324 WLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 359 (477)
Q Consensus 324 ~~~~p~~~d~~~~l~~~~~v~~~Pt~~lid~~G~iv 359 (477)
.....-....+..+++.+||+|+||+++. +|+++
T Consensus 100 ~~~~~~~i~~~~~la~~lGv~GTPt~~~~--nG~~i 133 (150)
T d1t3ba1 100 EVKTPNIVKKHYELGIQFGVRGTPSIVTS--TGELI 133 (150)
T ss_dssp SCCCSSHHHHHHHHHHHHTCCSSCEEECT--TSCCC
T ss_pred chhhhhHHHHHHHHHHhcCcCCCCEEEEc--CCcEe
Confidence 01111123456678999999999988874 57653
|
| >d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.45 E-value=0.00055 Score=57.95 Aligned_cols=102 Identities=17% Similarity=0.346 Sum_probs=78.2
Q ss_pred ceecccC-CCCEEEEEEe-CCCChhhHh-HhHHHHHHHHHH-HhcCCcE-EEEEEeCCCChhHHHHHHhcCCCceeccCc
Q 011791 257 KVPVSDL-AGKTILLYFS-AHWCPPCRA-FLPKLIDAYKKI-KERNESL-EVVFISSDRDQTSFDEFFKGMPWLALPFGD 331 (477)
Q Consensus 257 ~~~l~~~-~gk~vll~F~-a~wC~~C~~-~~p~l~~l~~~~-~~~~~~~-~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~ 331 (477)
+++++++ +||.|+|.+. +...|.|.. .+|.+.+.|+++ +++ ++ +|+.+++| +.-..++|.+.++...+.++.
T Consensus 33 ~~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~--gvd~I~~iSvn-D~fv~~aW~~~~~~~~I~~ls 109 (179)
T d1xiya1 33 SIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKEN--NFDDIYCITNN-DIYVLKSWFKSMDIKKIKYIS 109 (179)
T ss_dssp EEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTS--CCSEEEEEESS-CHHHHHHHHHHTTCCSSEEEE
T ss_pred EeeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHhc--CCceEEEEecC-CHHHHHHHHhhcCcceEEEee
Confidence 4555554 8887777666 789999966 799999999998 455 33 79999998 667777888777766678889
Q ss_pred chhHHHHHhcCCC-----------CcceEEEECCCCcEEEec
Q 011791 332 ARKASLSRKFKVS-----------GIPMLVAIGPSGRTITKE 362 (477)
Q Consensus 332 d~~~~l~~~~~v~-----------~~Pt~~lid~~G~iv~~~ 362 (477)
|.+.++++.+|+. +.-..++|+ +|+|....
T Consensus 110 D~~g~f~k~lg~~~d~~~~g~G~Rs~R~a~iid-dg~I~~~~ 150 (179)
T d1xiya1 110 DGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMF 150 (179)
T ss_dssp CTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEE
T ss_pred CCchHHHHhhhcccccccCCCeeEEeeEEEEEE-CCEEEEEE
Confidence 9999999999862 234578886 89988764
|
| >d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.41 E-value=0.00037 Score=58.13 Aligned_cols=88 Identities=10% Similarity=0.194 Sum_probs=54.4
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEc--CC--CH---------------HHHHHhhcC--C
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL--DD--EE---------------ESFKRDLGS--M 162 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~--D~--~~---------------~~~~~~~~~--~ 162 (477)
.+|.+++.|+...||+|+.+.|.+.++.+ .+ +.++++.. .. .. ..+.+.... +
T Consensus 25 ~ak~tIv~FsD~~CpyC~~~~~~l~~~~~----~~--~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 98 (156)
T d1eeja1 25 QEKHVITVFTDITCGYCHKLHEQMADYNA----LG--ITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSV 98 (156)
T ss_dssp TCCEEEEEEECTTCHHHHHHHTTHHHHHH----TT--EEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCC
T ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHHhhc----cC--ceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhcccc
Confidence 46889999999999999999998887743 23 55555443 11 11 111111111 1
Q ss_pred CCccccCCchhHHHHHHHcCcccCCeEEEECCCCCcc
Q 011791 163 PWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 199 (477)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~ 199 (477)
..............+++.+||+++|++++. +|+++
T Consensus 99 ~~~~~~~~i~~~~~la~~lgv~GTPt~~~~--nG~~v 133 (156)
T d1eeja1 99 APASCDVDIADHYALGVQLGVSGTPAVVLS--NGTLV 133 (156)
T ss_dssp CCCCCSCCHHHHHHHHHHHTCCSSSEEECT--TSCEE
T ss_pred chhhhcchHHHHHHHHHHcCCcCCCEEEEe--CCeEe
Confidence 122222223455688999999999997764 57655
|
| >d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Hypothetical protein EF0770 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.35 E-value=0.0014 Score=54.87 Aligned_cols=49 Identities=12% Similarity=0.259 Sum_probs=38.4
Q ss_pred ecccCCCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeC
Q 011791 259 PVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS 308 (477)
Q Consensus 259 ~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~ 308 (477)
.+-+-.++..|+.|+...||+|+++.+.+.++.+++.+. ..+.++.+..
T Consensus 18 ~~G~~~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 66 (172)
T d1z6ma1 18 HIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKS-GKVERIIKLF 66 (172)
T ss_dssp EESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHT-TSEEEEEEEC
T ss_pred eecCCCCCEEEEEEECCCCHhHHHHHHHHhhhhhhhccc-cceeeeeccc
Confidence 343444678899999999999999999999999998764 3466666655
|
| >d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Vibrio cholerae [TaxId: 666]
Probab=97.30 E-value=0.00083 Score=56.83 Aligned_cols=42 Identities=17% Similarity=0.397 Sum_probs=33.7
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS 308 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~ 308 (477)
.++++++.|+...||+|+.+.+.+.++.+++.+. ..++...+
T Consensus 17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~---~~~~~~~~ 58 (181)
T d1beda_ 17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEG---AKFQKNHV 58 (181)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTT---CEEEEEEC
T ss_pred CCCCEEEEEECCCCccchhhhhhhhhHhhhcccc---cceeEEec
Confidence 3688999999999999999999999998888654 44554443
|
| >d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Thiol:disulfide interchange protein DsbG, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.14 E-value=0.0015 Score=54.97 Aligned_cols=98 Identities=9% Similarity=0.068 Sum_probs=60.2
Q ss_pred EecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC---CC-------------HHHHHHhhc-
Q 011791 98 ISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD---DE-------------EESFKRDLG- 160 (477)
Q Consensus 98 v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D---~~-------------~~~~~~~~~- 160 (477)
+..-.-..+.+++.|....||+|+.+.+.+.++.+.. ++.|+++.+. .+ +..+.+...
T Consensus 29 i~~G~~~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~-----~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~ 103 (169)
T d1v58a1 29 LLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDSG-----KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEA 103 (169)
T ss_dssp EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHTT-----SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHH
T ss_pred ceeCCCCCCEEEEEEECCCCcchHHHHHHHHHHHhcc-----ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHH
Confidence 3333344578899999999999999999887765432 2777777653 11 111111111
Q ss_pred C---CC-CccccCCc------hhHHHHHHHcCcccCCeEEEECCCCCccc
Q 011791 161 S---MP-WLALPFKD------KSREKLARYFELSTLPTLVIIGPDGKTLH 200 (477)
Q Consensus 161 ~---~~-~~~~~~~~------~~~~~l~~~~~v~~~P~~~lid~~G~i~~ 200 (477)
. .. +..-.... +.+..+++.+|++++|++++.|++|++..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~~ 153 (169)
T d1v58a1 104 SGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQ 153 (169)
T ss_dssp TTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEE
T ss_pred hhhcccccccchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEE
Confidence 1 11 11111111 22346778999999999999999887643
|
| >d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Corynebacterium ammoniagenes [TaxId: 1697]
Probab=97.11 E-value=0.00094 Score=47.85 Aligned_cols=59 Identities=15% Similarity=0.229 Sum_probs=40.2
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
++.|..+||++|.+....|.+. ++.+..+.++.+.+. ....+.+|.+++|.
T Consensus 3 v~iYt~~~C~~C~~ak~~L~~~---------~i~~~~~~i~~~~~~--------------------~~~~~~~g~~tvP~ 53 (74)
T d1r7ha_ 3 ITLYTKPACVQCTATKKALDRA---------GLAYNTVDISLDDEA--------------------RDYVMALGYVQAPV 53 (74)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT---------TCCCEEEETTTCHHH--------------------HHHHHHTTCBCCCE
T ss_pred EEEEeCCCChhHHHHHHHHHHc---------CCceEEEEccCCHHH--------------------HHHHHHhCCCCcCE
Confidence 4668889999999988776542 355666777765431 23445668899997
Q ss_pred EEEECCCCcEE
Q 011791 349 LVAIGPSGRTI 359 (477)
Q Consensus 349 ~~lid~~G~iv 359 (477)
++ + +|+.+
T Consensus 54 i~-i--~g~~i 61 (74)
T d1r7ha_ 54 VE-V--DGEHW 61 (74)
T ss_dssp EE-E--TTEEE
T ss_pred EE-E--CCEEE
Confidence 65 4 56654
|
| >d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=97.10 E-value=0.00084 Score=57.31 Aligned_cols=46 Identities=24% Similarity=0.352 Sum_probs=33.9
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 309 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d 309 (477)
.++++|+.|+.-.||+|+++.+.+..+.+..+....++.++...+.
T Consensus 17 ~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 62 (188)
T d1fvka_ 17 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN 62 (188)
T ss_dssp TTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEECS
T ss_pred CCCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEecC
Confidence 4788899999999999999999886665544433334666666654
|
| >d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=96.97 E-value=0.0012 Score=57.05 Aligned_cols=43 Identities=28% Similarity=0.454 Sum_probs=31.7
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHH---HHHHHHhcCCcEEEEEEeCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLID---AYKKIKERNESLEVVFISSD 309 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~---l~~~~~~~~~~~~iv~i~~d 309 (477)
.+++.|+.|+.-+||+|.++.|.|.. +.+.+++ ++.++...+.
T Consensus 112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~---~v~~~~~~~~ 157 (195)
T d1un2a_ 112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE---GVKMTKYHVN 157 (195)
T ss_dssp TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT---TCCEEEEECS
T ss_pred CCCceEEEEEecCCccccccchhhhHHHHHHhhcCC---CcEEEEEecC
Confidence 47888999999999999999998754 4444443 4666666554
|
| >d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.88 E-value=0.0017 Score=53.56 Aligned_cols=88 Identities=15% Similarity=0.168 Sum_probs=52.7
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC--C-CHHHHHHh---h------------cC---C
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD--D-EEESFKRD---L------------GS---M 162 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D--~-~~~~~~~~---~------------~~---~ 162 (477)
.+|.+++.|+-..||+|+.+.+.+.++-+. + ..|+.+... . ........ . .. +
T Consensus 25 ~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~----~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~ 98 (150)
T d1t3ba1 25 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL----G--ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLP 98 (150)
T ss_dssp TCSEEEEEEECTTCHHHHHHHTTHHHHHHT----T--EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCC
T ss_pred CCCEEEEEEECCCCHHHHHHhHHHHHHhcc----C--ceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccc
Confidence 458888999999999999999988777542 3 445554432 1 11111110 0 00 1
Q ss_pred CCccccCCchhHHHHHHHcCcccCCeEEEECCCCCcc
Q 011791 163 PWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 199 (477)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~ 199 (477)
..............+++.+||+++|++++. ||+++
T Consensus 99 ~~~~~~~~i~~~~~la~~lGv~GTPt~~~~--nG~~i 133 (150)
T d1t3ba1 99 KEVKTPNIVKKHYELGIQFGVRGTPSIVTS--TGELI 133 (150)
T ss_dssp SSCCCSSHHHHHHHHHHHHTCCSSCEEECT--TSCCC
T ss_pred cchhhhhHHHHHHHHHHhcCcCCCCEEEEc--CCcEe
Confidence 111111112344678899999999998874 57655
|
| >d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Hypothetical protein EF0770 species: Enterococcus faecalis [TaxId: 1351]
Probab=96.85 E-value=0.0058 Score=50.93 Aligned_cols=51 Identities=8% Similarity=0.075 Sum_probs=41.2
Q ss_pred eEecCCCCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEc
Q 011791 97 KISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL 148 (477)
Q Consensus 97 ~v~ls~l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~ 148 (477)
.+.+-+-.+++.++.|+...||+|..+.+.+.++.+++.+.+ .+.++.+..
T Consensus 16 ~~~~G~~~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 66 (172)
T d1z6ma1 16 GLHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSG-KVERIIKLF 66 (172)
T ss_dssp SEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEC
T ss_pred CCeecCCCCCEEEEEEECCCCHhHHHHHHHHhhhhhhhcccc-ceeeeeccc
Confidence 455666667888999999999999999999999999988764 366666655
|
| >d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.62 E-value=0.0015 Score=55.16 Aligned_cols=103 Identities=14% Similarity=0.174 Sum_probs=69.4
Q ss_pred CeEecCCC-CCCEEEEEEe-cCCCccchh-hHHHHHHHHHHH-hcCCCcEEEEEEEcCCC--HHHHHHhhcCCCCccccC
Q 011791 96 RKISVSDL-EGKTIGLYFS-MSSYKASAE-FTPRLVEVYEKL-KGKGESFEIVLISLDDE--EESFKRDLGSMPWLALPF 169 (477)
Q Consensus 96 ~~v~ls~l-~gk~vll~F~-a~wC~~C~~-~~p~l~~l~~~~-~~~g~~~~vv~is~D~~--~~~~~~~~~~~~~~~~~~ 169 (477)
+.++++++ +||.|+|++. +..-|.|.. .+|.+.+.|+++ +++|.+ +|+.||+|+. ..+|.+.... + .+.+
T Consensus 32 ~~~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~gvd-~I~~iSvnD~fv~~aW~~~~~~-~--~I~~ 107 (179)
T d1xiya1 32 TSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFD-DIYCITNNDIYVLKSWFKSMDI-K--KIKY 107 (179)
T ss_dssp EEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCS-EEEEEESSCHHHHHHHHHHTTC-C--SSEE
T ss_pred eEeeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHhcCCc-eEEEEecCCHHHHHHHHhhcCc-c--eEEE
Confidence 45677765 8888777654 567899965 589999999998 677722 7899999864 3456554332 2 2344
Q ss_pred CchhHHHHHHHcCc-----------ccCCeEEEECCCCCccccch
Q 011791 170 KDKSREKLARYFEL-----------STLPTLVIIGPDGKTLHSNV 203 (477)
Q Consensus 170 ~~~~~~~l~~~~~v-----------~~~P~~~lid~~G~i~~~~~ 203 (477)
..+....+++.+|+ +.--..+|++ +|+|.+...
T Consensus 108 lsD~~g~f~k~lg~~~d~~~~g~G~Rs~R~a~iid-dg~I~~~~v 151 (179)
T d1xiya1 108 ISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMFQ 151 (179)
T ss_dssp EECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEEE
T ss_pred eeCCchHHHHhhhcccccccCCCeeEEeeEEEEEE-CCEEEEEEE
Confidence 44555667888876 2334567887 898887654
|
| >d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Escherichia coli [TaxId: 562]
Probab=96.46 E-value=0.0048 Score=44.22 Aligned_cols=59 Identities=17% Similarity=0.313 Sum_probs=38.9
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
++.|..+||++|.+....|.+. ++.+..++++.+.+. .+..+..|.+++|.
T Consensus 3 i~iYs~~~C~~C~~ak~~L~~~---------~i~y~~~~i~~~~~~--------------------~~~~~~~g~~tvP~ 53 (76)
T d1h75a_ 3 ITIYTRNDCVQCHATKRAMENR---------GFDFEMINVDRVPEA--------------------AEALRAQGFRQLPV 53 (76)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT---------TCCCEEEETTTCHHH--------------------HHHHHHTTCCSSCE
T ss_pred EEEEeCCCCccHHHHHHHHHhc---------CceeEEEeecCCHHH--------------------HHHHHhcCCCCCCE
Confidence 4567889999999988777542 355556677765431 12334568899999
Q ss_pred EEEECCCCcEE
Q 011791 349 LVAIGPSGRTI 359 (477)
Q Consensus 349 ~~lid~~G~iv 359 (477)
+++ +|+.+
T Consensus 54 i~i---~~~~i 61 (76)
T d1h75a_ 54 VIA---GDLSW 61 (76)
T ss_dssp EEE---TTEEE
T ss_pred EEE---CCEEE
Confidence 765 45544
|
| >d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli [TaxId: 562]
Probab=95.80 E-value=0.011 Score=43.27 Aligned_cols=37 Identities=11% Similarity=0.199 Sum_probs=28.4
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCC
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 309 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d 309 (477)
++.|..++||+|.+....|.++..+++ ++.+.-++++
T Consensus 3 vviysk~~Cp~C~~aK~ll~~~~~~~~----~i~~~~~~~~ 39 (85)
T d1egoa_ 3 TVIFGRSGCPYCVRAKDLAEKLSNERD----DFQYQYVDIR 39 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHS----SCEEEEECHH
T ss_pred EEEEeCCCCHhHHHHHHHHHHcCCCCC----CceEEEEecC
Confidence 466888999999999999988877665 3666666554
|
| >d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: C-terminal, Grx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=95.64 E-value=0.017 Score=40.87 Aligned_cols=59 Identities=25% Similarity=0.328 Sum_probs=37.5
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
++.|+.++||+|++....|.+. ++.+..+.++.+.. ...+.+..+...+|.
T Consensus 7 I~iYs~~~C~~C~~ak~lL~~~---------~i~~~~~~v~~~~~--------------------~~~~~~~~~~~tvP~ 57 (74)
T d1nm3a1 7 ISIFTKPGCPFCAKAKQLLHDK---------GLSFEEIILGHDAT--------------------IVSVRAVSGRTTVPQ 57 (74)
T ss_dssp EEEEECSSCHHHHHHHHHHHHH---------TCCCEEEETTTTCC--------------------HHHHHHHTCCSSSCE
T ss_pred EEEEECCCCHHHHHHHHHHHHc---------CCCeEEEEccCcHH--------------------HHHHHHHhCCccCCE
Confidence 3567899999999998777653 23344445554321 123455667889998
Q ss_pred EEEECCCCcEE
Q 011791 349 LVAIGPSGRTI 359 (477)
Q Consensus 349 ~~lid~~G~iv 359 (477)
++ + +|+.+
T Consensus 58 i~-i--~g~~I 65 (74)
T d1nm3a1 58 VF-I--GGKHI 65 (74)
T ss_dssp EE-E--TTEEE
T ss_pred EE-E--CCEEE
Confidence 64 4 46655
|
| >d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli, Grx3 [TaxId: 562]
Probab=95.62 E-value=0.019 Score=41.57 Aligned_cols=59 Identities=14% Similarity=0.311 Sum_probs=38.6
Q ss_pred EEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcceE
Q 011791 270 LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPML 349 (477)
Q Consensus 270 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~ 349 (477)
..|..+|||+|.+....|.+. ++.+..++++.+... ...+.+..|.+.+|.+
T Consensus 4 ~iys~~~Cp~C~~ak~~L~~~---------~i~y~~~di~~~~~~-------------------~~~~~~~~g~~tvP~i 55 (82)
T d1fova_ 4 EIYTKETCPYCHRAKALLSSK---------GVSFQELPIDGNAAK-------------------REEMIKRSGRTTVPQI 55 (82)
T ss_dssp EEEECSSCHHHHHHHHHHHHH---------TCCCEEEECTTCSHH-------------------HHHHHHHHSSCCSCEE
T ss_pred EEEeCCCCHhHHHHHHHHHHc---------CCCeEEEeccchHHH-------------------HHHHHHHhCCCCCCeE
Confidence 457789999999988766542 344555666654422 1245556688899987
Q ss_pred EEECCCCcEE
Q 011791 350 VAIGPSGRTI 359 (477)
Q Consensus 350 ~lid~~G~iv 359 (477)
+ + +|+.+
T Consensus 56 ~-i--~~~~I 62 (82)
T d1fova_ 56 F-I--DAQHI 62 (82)
T ss_dssp E-E--TTEEE
T ss_pred E-E--CCEEE
Confidence 5 5 46655
|
| >d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein XCC2852 species: Xanthomonas campestris [TaxId: 339]
Probab=95.50 E-value=0.068 Score=37.79 Aligned_cols=70 Identities=23% Similarity=0.416 Sum_probs=44.0
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
|..|..++|+.|......|.+ . . ++++.-++++.+. ++..+|+.. +|.
T Consensus 2 ltLyt~~~C~LCe~A~~~l~~----~--~--~~~~~~vdI~~d~-----------------------~l~~~y~~~-IPV 49 (75)
T d1ttza_ 2 LTLYQRDDCHLCDQAVEALAQ----A--R--AGAFFSVFIDDDA-----------------------ALESAYGLR-VPV 49 (75)
T ss_dssp EEEEECSSCHHHHHHHHHHHH----T--T--CCCEEEEECTTCH-----------------------HHHHHHTTT-CSE
T ss_pred EEEECCCCccHHHHHHHHHHh----c--c--CCcEEEEEccCCH-----------------------HHHHHhCCe-eeE
Confidence 345788999999876544432 1 1 3556667777654 578888865 895
Q ss_pred EEEECCCCcEEEeccchhhhhcCCCCCCCCHHHHHHHH
Q 011791 349 LVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEID 386 (477)
Q Consensus 349 ~~lid~~G~iv~~~~~~~~~~~g~~~~~~~~~~~~~l~ 386 (477)
+ ++ .+|..+.- ||++.++++++
T Consensus 50 l-~~-~~~~~l~w--------------~fd~~~l~~~L 71 (75)
T d1ttza_ 50 L-RD-PMGRELDW--------------PFDAPRLRAWL 71 (75)
T ss_dssp E-EC-TTCCEEES--------------CCCHHHHHHHH
T ss_pred E-EE-CCeeEEcC--------------ccCHHHHHHHH
Confidence 4 34 35665542 57776665543
|
| >d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.41 E-value=0.004 Score=47.79 Aligned_cols=66 Identities=21% Similarity=0.325 Sum_probs=41.6
Q ss_pred EEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcce
Q 011791 269 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 348 (477)
Q Consensus 269 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt 348 (477)
++.|..+|||+|.+....|.++.- ++..+.++-+..+.+...++++ +.+..+.+.+|.
T Consensus 14 Vviysk~~Cp~C~~ak~ll~~~~~----~~~~~~~~e~d~~~d~~~~~~~------------------l~~~~g~~tvPq 71 (105)
T d1ktea_ 14 VVVFIKPTCPFCRKTQELLSQLPF----KEGLLEFVDITATSDTNEIQDY------------------LQQLTGARTVPR 71 (105)
T ss_dssp EEEEECSSCHHHHHHHHHHHHSCB----CTTSEEEEEGGGSTTHHHHHHH------------------HHHHHSCCCSCE
T ss_pred EEEEECCCCchHHHHHHHHHHhCC----ccceeeeeecccccccHHHHHH------------------HhhccCCCcCcE
Confidence 457889999999998877755322 2234556656555554443332 334457789998
Q ss_pred EEEECCCCcEE
Q 011791 349 LVAIGPSGRTI 359 (477)
Q Consensus 349 ~~lid~~G~iv 359 (477)
+++ +|+.+
T Consensus 72 Ifi---~g~~I 79 (105)
T d1ktea_ 72 VFI---GKECI 79 (105)
T ss_dssp EEE---TTEEE
T ss_pred EEE---CCEEE
Confidence 754 57765
|
| >d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.36 E-value=0.055 Score=42.02 Aligned_cols=69 Identities=13% Similarity=0.363 Sum_probs=47.7
Q ss_pred CCCCEEEEEEeC-CCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhc
Q 011791 263 LAGKTILLYFSA-HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 341 (477)
Q Consensus 263 ~~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 341 (477)
+++.+.++.|.+ ..|+.|..+...++++.. +.+ .+.+.....+... ..++++.|
T Consensus 20 l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~-lSd---ki~~~~~~~~~~e---------------------~~~~~~~~ 74 (119)
T d1a8la1 20 MVNPVKLIVFVRKDHCQYCDQLKQLVQELSE-LTD---KLSYEIVDFDTPE---------------------GKELAKRY 74 (119)
T ss_dssp CCSCEEEEEEECSSSCTTHHHHHHHHHHHHT-TCT---TEEEEEEETTSHH---------------------HHHHHHHT
T ss_pred CCCCEEEEEEecCCCchhHHHHHHHHHHHHh-hCC---CeEEEEeccCcch---------------------hhhHHHhh
Confidence 334444555554 579999998887777643 333 4777777766543 34789999
Q ss_pred CCCCcceEEEECCCCc
Q 011791 342 KVSGIPMLVAIGPSGR 357 (477)
Q Consensus 342 ~v~~~Pt~~lid~~G~ 357 (477)
+|...|++.+.+ +|+
T Consensus 75 ~ver~Ps~~i~~-~g~ 89 (119)
T d1a8la1 75 RIDRAPATTITQ-DGK 89 (119)
T ss_dssp TCCSSSEEEEEE-TTB
T ss_pred ccccCceEEEec-CCc
Confidence 999999999985 454
|
| >d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Vibrio cholerae [TaxId: 666]
Probab=95.35 E-value=0.031 Score=46.50 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=33.7
Q ss_pred CCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL 148 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~ 148 (477)
.++++++.|+...||+|+.+.+.+.++.+++.+.+ .+....+.+
T Consensus 17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~-~~~~~~~~~ 60 (181)
T d1beda_ 17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGA-KFQKNHVSF 60 (181)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTC-EEEEEECSS
T ss_pred CCCCEEEEEECCCCccchhhhhhhhhHhhhccccc-ceeEEeccc
Confidence 46788888999999999999999999999887653 233344443
|
| >d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=95.24 E-value=0.01 Score=50.89 Aligned_cols=42 Identities=19% Similarity=0.128 Sum_probs=28.4
Q ss_pred CCCEEEEEEecCCCccchhhHHHHH---HHHHHHhcCCCcEEEEEEEc
Q 011791 104 EGKTIGLYFSMSSYKASAEFTPRLV---EVYEKLKGKGESFEIVLISL 148 (477)
Q Consensus 104 ~gk~vll~F~a~wC~~C~~~~p~l~---~l~~~~~~~g~~~~vv~is~ 148 (477)
.+++.++.|+.-+||+|..+.|.|. ++.+.+.+ ++.++.+.+
T Consensus 112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~---~v~~~~~~~ 156 (195)
T d1un2a_ 112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE---GVKMTKYHV 156 (195)
T ss_dssp TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT---TCCEEEEEC
T ss_pred CCCceEEEEEecCCccccccchhhhHHHHHHhhcCC---CcEEEEEec
Confidence 4677788888899999999998765 34444433 245555443
|
| >d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=95.14 E-value=0.015 Score=48.95 Aligned_cols=47 Identities=15% Similarity=0.026 Sum_probs=33.7
Q ss_pred CCCCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcC
Q 011791 103 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 149 (477)
Q Consensus 103 l~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D 149 (477)
..++++++.|+.-.||+|+.+-+.|..+.+..+..+..+.++...+.
T Consensus 16 ~~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 62 (188)
T d1fvka_ 16 VAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN 62 (188)
T ss_dssp CTTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEECS
T ss_pred CCCCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEecC
Confidence 35677888899999999999998876666654443334666666554
|
| >d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) domain: Kinase suppressor of Ras, Ksr species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.03 E-value=0.0082 Score=38.87 Aligned_cols=40 Identities=18% Similarity=0.470 Sum_probs=30.6
Q ss_pred cceeeccCCceeccCCCCCCCeEEEEcCCCCCCcccccccc
Q 011791 407 HELVLDRCGVYSCDGCDEEGRVWAFSCDECDFCLHPNCALG 447 (477)
Q Consensus 407 ~~~~l~~~~~~~~~~C~~~g~~w~~~~~~~~~~~~~~~~~~ 447 (477)
|.+.......+.|+.|...-. +.|.|.+|.+-.|.+|+-.
T Consensus 5 H~F~~~~~~~~tC~~C~~~l~-qg~~C~~C~~~~Hk~C~~~ 44 (49)
T d1kbea_ 5 HRFSTKSWLSQVCNVCQKSMI-FGVKCKHCRLKCHNKCTKE 44 (49)
T ss_dssp CCEEEECCSSCCCSSSCCSSC-CEEEETTTTEEESSSCTTT
T ss_pred cEEeecCcCCCCchhhchhhh-CcCCcCCCCChHhHhhccc
Confidence 334333334556999999885 7899999999999999853
|
| >d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Corynebacterium ammoniagenes [TaxId: 1697]
Probab=93.59 E-value=0.063 Score=37.66 Aligned_cols=59 Identities=10% Similarity=0.177 Sum_probs=37.9
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
++-|..++|++|......| ++.| +.+..+.+|.+.+.. ...+.+|...+|.
T Consensus 3 v~iYt~~~C~~C~~ak~~L-------~~~~--i~~~~~~i~~~~~~~--------------------~~~~~~g~~tvP~ 53 (74)
T d1r7ha_ 3 ITLYTKPACVQCTATKKAL-------DRAG--LAYNTVDISLDDEAR--------------------DYVMALGYVQAPV 53 (74)
T ss_dssp EEEEECTTCHHHHHHHHHH-------HHTT--CCCEEEETTTCHHHH--------------------HHHHHTTCBCCCE
T ss_pred EEEEeCCCChhHHHHHHHH-------HHcC--CceEEEEccCCHHHH--------------------HHHHHhCCCCcCE
Confidence 4568899999998665544 3345 555566777665422 2345678889998
Q ss_pred EEEECCCCCcc
Q 011791 189 LVIIGPDGKTL 199 (477)
Q Consensus 189 ~~lid~~G~i~ 199 (477)
+++ +|+.+
T Consensus 54 i~i---~g~~i 61 (74)
T d1r7ha_ 54 VEV---DGEHW 61 (74)
T ss_dssp EEE---TTEEE
T ss_pred EEE---CCEEE
Confidence 765 45544
|
| >d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=93.19 E-value=0.17 Score=39.83 Aligned_cols=70 Identities=9% Similarity=0.062 Sum_probs=48.2
Q ss_pred CCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC-
Q 011791 265 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV- 343 (477)
Q Consensus 265 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v- 343 (477)
++++++.|+..- .........+.+++++|+++ +.++.++.+.. ....+.||+
T Consensus 23 ~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~k---i~Fv~vd~~~~-----------------------~~~l~~~gl~ 75 (133)
T d2djka1 23 GIPLAYIFAETA-EERKELSDKLKPIAEAQRGV---INFGTIDAKAF-----------------------GAHAGNLNLK 75 (133)
T ss_dssp TSCEEEEECSCS-SSHHHHHHHHHHHHHSSTTT---SEEEEECTTTT-----------------------GGGTTTTTCC
T ss_pred CCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcCc---eEEEEEeHHHh-----------------------HHHHHHhcCC
Confidence 678888887653 35567788888898888876 55655543322 234666787
Q ss_pred -CCcceEEEECCCCcEEEe
Q 011791 344 -SGIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 -~~~Pt~~lid~~G~iv~~ 361 (477)
...|.+++++.+++....
T Consensus 76 ~~~~P~~~i~~~~~~~~~~ 94 (133)
T d2djka1 76 TDKFPAFAIQEVAKNQKFP 94 (133)
T ss_dssp SSSSSEEEEECTTTCCBCC
T ss_pred cccCCcEEEEEcCCCceec
Confidence 468999999877665443
|
| >d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Escherichia coli [TaxId: 562]
Probab=92.51 E-value=0.12 Score=36.48 Aligned_cols=54 Identities=15% Similarity=0.279 Sum_probs=34.2
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
++.|..+||++|......| .+.| +.+..+.++.+.+... ..+..|.+.+|.
T Consensus 3 i~iYs~~~C~~C~~ak~~L-------~~~~--i~y~~~~i~~~~~~~~--------------------~~~~~g~~tvP~ 53 (76)
T d1h75a_ 3 ITIYTRNDCVQCHATKRAM-------ENRG--FDFEMINVDRVPEAAE--------------------ALRAQGFRQLPV 53 (76)
T ss_dssp EEEEECTTCHHHHHHHHHH-------HHTT--CCCEEEETTTCHHHHH--------------------HHHHTTCCSSCE
T ss_pred EEEEeCCCCccHHHHHHHH-------HhcC--ceeEEEeecCCHHHHH--------------------HHHhcCCCCCCE
Confidence 3557899999998655443 3345 4445566666554222 234568889999
Q ss_pred EEE
Q 011791 189 LVI 191 (477)
Q Consensus 189 ~~l 191 (477)
+++
T Consensus 54 i~i 56 (76)
T d1h75a_ 54 VIA 56 (76)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
|
| >d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) domain: RAF-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.06 E-value=0.052 Score=35.37 Aligned_cols=34 Identities=24% Similarity=0.549 Sum_probs=29.1
Q ss_pred CCceeccCCCCCCCeEEEEcCCCCCCccccccccc
Q 011791 414 CGVYSCDGCDEEGRVWAFSCDECDFCLHPNCALGE 448 (477)
Q Consensus 414 ~~~~~~~~C~~~g~~w~~~~~~~~~~~~~~~~~~~ 448 (477)
..+..|+.|++... ..|.|..|++.+|.+|....
T Consensus 12 ~~~~~C~~C~~~i~-~g~~C~~C~~~~H~~C~~~v 45 (52)
T d1faqa_ 12 LKLAFCDICQKFLL-NGFRCQTCGYKFHEHCSTKV 45 (52)
T ss_dssp SSCEECTTSSSEEC-SEEECTTTTCCBCSTTSSSS
T ss_pred CCCcCCccCCCccc-cCCCcCCCCChhhhhhhccc
Confidence 45689999998764 68999999999999999654
|
| >d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.71 E-value=0.07 Score=40.39 Aligned_cols=66 Identities=17% Similarity=0.191 Sum_probs=38.6
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCe
Q 011791 109 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 188 (477)
Q Consensus 109 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 188 (477)
++.|..+|||.|......| +.+.-+...+.++-+..+.+.+.+. ..+.+..|.+.+|.
T Consensus 14 Vviysk~~Cp~C~~ak~ll----~~~~~~~~~~~~~e~d~~~d~~~~~------------------~~l~~~~g~~tvPq 71 (105)
T d1ktea_ 14 VVVFIKPTCPFCRKTQELL----SQLPFKEGLLEFVDITATSDTNEIQ------------------DYLQQLTGARTVPR 71 (105)
T ss_dssp EEEEECSSCHHHHHHHHHH----HHSCBCTTSEEEEEGGGSTTHHHHH------------------HHHHHHHSCCCSCE
T ss_pred EEEEECCCCchHHHHHHHH----HHhCCccceeeeeecccccccHHHH------------------HHHhhccCCCcCcE
Confidence 4568999999998655544 3333222225555444444443333 23445567788999
Q ss_pred EEEECCCCCcc
Q 011791 189 LVIIGPDGKTL 199 (477)
Q Consensus 189 ~~lid~~G~i~ 199 (477)
+++ +|+.+
T Consensus 72 Ifi---~g~~I 79 (105)
T d1ktea_ 72 VFI---GKECI 79 (105)
T ss_dssp EEE---TTEEE
T ss_pred EEE---CCEEE
Confidence 776 56655
|
| >d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.10 E-value=0.69 Score=35.46 Aligned_cols=68 Identities=12% Similarity=0.228 Sum_probs=44.3
Q ss_pred CCCCCEEEEEEec-CCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 011791 102 DLEGKTIGLYFSM-SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 180 (477)
Q Consensus 102 ~l~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (477)
.++..+.++.|.. ..|+.|......|.++ .+-..++.+.....+... ...+++.
T Consensus 19 ~l~~pV~l~~~~~~~~~~~~~e~~~ll~el----a~lSdki~~~~~~~~~~e---------------------~~~~~~~ 73 (119)
T d1a8la1 19 KMVNPVKLIVFVRKDHCQYCDQLKQLVQEL----SELTDKLSYEIVDFDTPE---------------------GKELAKR 73 (119)
T ss_dssp GCCSCEEEEEEECSSSCTTHHHHHHHHHHH----HTTCTTEEEEEEETTSHH---------------------HHHHHHH
T ss_pred hCCCCEEEEEEecCCCchhHHHHHHHHHHH----HhhCCCeEEEEeccCcch---------------------hhhHHHh
Confidence 3445566666664 4799998655555544 333334776666555332 2567899
Q ss_pred cCcccCCeEEEECC
Q 011791 181 FELSTLPTLVIIGP 194 (477)
Q Consensus 181 ~~v~~~P~~~lid~ 194 (477)
|++...|++++.+.
T Consensus 74 ~~ver~Ps~~i~~~ 87 (119)
T d1a8la1 74 YRIDRAPATTITQD 87 (119)
T ss_dssp TTCCSSSEEEEEET
T ss_pred hccccCceEEEecC
Confidence 99999999998874
|
| >d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH985, a thioredoxin species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.19 E-value=0.39 Score=33.73 Aligned_cols=60 Identities=15% Similarity=0.236 Sum_probs=43.5
Q ss_pred EEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCCCCcceE
Q 011791 270 LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPML 349 (477)
Q Consensus 270 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~ 349 (477)
|...++.|+.|.+.....++..++++- +.+|.-+ . +. .++. .|||.++|.+
T Consensus 4 IkVlg~gC~~C~~~~~~v~~a~~e~gi---~a~v~kv--~-d~----------------------~ei~-~ygVmstPal 54 (77)
T d1iloa_ 4 IQIYGTGCANCQMLEKNAREAVKELGI---DAEFEKI--K-EM----------------------DQIL-EAGLTALPGL 54 (77)
T ss_dssp EEEECSSSSTTHHHHHHHHHHHHHTTC---CEEEEEE--C-SH----------------------HHHH-HHTCSSSSCE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHcCC---ceEEEEe--C-CH----------------------HHHH-HcCCcCCCEE
Confidence 344589999999999998888777642 3566555 2 32 2455 5999999998
Q ss_pred EEECCCCcEEEe
Q 011791 350 VAIGPSGRTITK 361 (477)
Q Consensus 350 ~lid~~G~iv~~ 361 (477)
++ ||+++..
T Consensus 55 vI---dg~vv~~ 63 (77)
T d1iloa_ 55 AV---DGELKIM 63 (77)
T ss_dssp EE---TTEEEEC
T ss_pred EE---CCEEEEE
Confidence 75 5888766
|
| >d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli, Grx3 [TaxId: 562]
Probab=88.36 E-value=0.23 Score=35.33 Aligned_cols=59 Identities=17% Similarity=0.305 Sum_probs=35.4
Q ss_pred EEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCeE
Q 011791 110 LYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTL 189 (477)
Q Consensus 110 l~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 189 (477)
..|..+|||+|......|. +.| +.+..+.++.+.+. ...+.+..|...+|.+
T Consensus 4 ~iys~~~Cp~C~~ak~~L~-------~~~--i~y~~~di~~~~~~-------------------~~~~~~~~g~~tvP~i 55 (82)
T d1fova_ 4 EIYTKETCPYCHRAKALLS-------SKG--VSFQELPIDGNAAK-------------------REEMIKRSGRTTVPQI 55 (82)
T ss_dssp EEEECSSCHHHHHHHHHHH-------HHT--CCCEEEECTTCSHH-------------------HHHHHHHHSSCCSCEE
T ss_pred EEEeCCCCHhHHHHHHHHH-------HcC--CCeEEEeccchHHH-------------------HHHHHHHhCCCCCCeE
Confidence 4578899999986554432 235 34444555544332 2335556688889997
Q ss_pred EEECCCCCcc
Q 011791 190 VIIGPDGKTL 199 (477)
Q Consensus 190 ~lid~~G~i~ 199 (477)
++ +|+.+
T Consensus 56 ~i---~~~~I 62 (82)
T d1fova_ 56 FI---DAQHI 62 (82)
T ss_dssp EE---TTEEE
T ss_pred EE---CCEEE
Confidence 65 45544
|
| >d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.20 E-value=1.1 Score=34.48 Aligned_cols=71 Identities=11% Similarity=0.135 Sum_probs=48.8
Q ss_pred CCCEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCCceeccCcchhHHHHHhcCC
Q 011791 264 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 343 (477)
Q Consensus 264 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 343 (477)
.|+|+++.|+.+- ..-......+.+++++|+++ +.++.++.+ . .....+.||+
T Consensus 16 ~~~Pl~~~f~~~~-~~~~~~~~~~~~vAk~fkgk---i~Fv~~D~~--~---------------------~~~~l~~fgl 68 (125)
T d2b5ea3 16 SGLPLGYLFYNDE-EELEEYKPLFTELAKKNRGL---MNFVSIDAR--K---------------------FGRHAGNLNM 68 (125)
T ss_dssp TTSCEEEEEESSH-HHHHHHHHHHHHHHHHTTTT---CEEEEEEHH--H---------------------HTTHHHHTTC
T ss_pred cCCCEEEEEeCCh-HHHHHHHHHHHHHHHHhcCe---eEEEEEchH--H---------------------hHHHHHHcCC
Confidence 3788888888763 23446788888899999876 666666543 2 1245677887
Q ss_pred C-CcceEEEECCCCcEEEe
Q 011791 344 S-GIPMLVAIGPSGRTITK 361 (477)
Q Consensus 344 ~-~~Pt~~lid~~G~iv~~ 361 (477)
. ..|.+++++.+....+.
T Consensus 69 ~e~~P~~~i~~~~~~~ky~ 87 (125)
T d2b5ea3 69 KEQFPLFAIHDMTEDLKYG 87 (125)
T ss_dssp CSCSSEEEEEETTTTEEEE
T ss_pred CccCCcEEEEecccCcccc
Confidence 5 58999999766655443
|
| >d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Atu2684-like domain: Hypothetical protein Atu2684 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=87.61 E-value=1.4 Score=37.73 Aligned_cols=79 Identities=19% Similarity=0.252 Sum_probs=49.6
Q ss_pred CEEEEEEeCCCChhhHhHhHHHHHHHHHHHhcCCcEEEEEEeCCCChhHHHHHHhcCCC---ceeccCcchhHHHHHhcC
Q 011791 266 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW---LALPFGDARKASLSRKFK 342 (477)
Q Consensus 266 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~---~~~p~~~d~~~~l~~~~~ 342 (477)
+.||=.|.+.||..|-.....|.+|.+. +++-.+.+.+|-- ...+| +..|....+.....+.++
T Consensus 6 ~aVVElFTSqgCssCPpAd~~L~~L~~~-----~~Vi~La~HVdYW--------d~lGw~D~fa~~~~t~RQ~~Y~~~~g 72 (225)
T d2axoa1 6 KGVVELFTSQGCASCPPADEALRKMIQK-----GDVVGLSYHVDYW--------NYLGWTDSLASKENTERQYGYMRALG 72 (225)
T ss_dssp CCEEEEEECTTCTTCHHHHHHHHHHHHH-----TSSEEEEEECSTT--------CSSSSCCTTCCHHHHHHHHHHHHHTT
T ss_pred CcEEEEeeCCCCCCCHHHHHHHHHhhCC-----CCEEEEEeccccc--------cccCCCCCCCCchhhHHHHHHHHhcC
Confidence 3456678899999999999999888653 2577888888720 01111 222333344455777788
Q ss_pred CCCcce-EEEECCCCcEE
Q 011791 343 VSGIPM-LVAIGPSGRTI 359 (477)
Q Consensus 343 v~~~Pt-~~lid~~G~iv 359 (477)
.+.+|| -+++ +|+.-
T Consensus 73 ~~~vyTPq~vv--nG~~~ 88 (225)
T d2axoa1 73 RNGVYTPQAIL--NGRDH 88 (225)
T ss_dssp CSCCCSSEEEE--TTTEE
T ss_pred CCCCCceeEEE--eCccc
Confidence 888776 3334 46543
|
| >d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=87.40 E-value=0.85 Score=35.42 Aligned_cols=68 Identities=19% Similarity=0.324 Sum_probs=41.9
Q ss_pred CCEEEEEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCc-
Q 011791 105 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL- 183 (477)
Q Consensus 105 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v- 183 (477)
++++++.|+... .........+.+++++++++ +.++.+ |.+. + ....+.||+
T Consensus 23 ~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~k---i~Fv~v--d~~~--~-------------------~~~l~~~gl~ 75 (133)
T d2djka1 23 GIPLAYIFAETA-EERKELSDKLKPIAEAQRGV---INFGTI--DAKA--F-------------------GAHAGNLNLK 75 (133)
T ss_dssp TSCEEEEECSCS-SSHHHHHHHHHHHHHSSTTT---SEEEEE--CTTT--T-------------------GGGTTTTTCC
T ss_pred CCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcCc---eEEEEE--eHHH--h-------------------HHHHHHhcCC
Confidence 456667777654 34456677778888888765 444444 4321 0 123456776
Q ss_pred -ccCCeEEEECCCCCcc
Q 011791 184 -STLPTLVIIGPDGKTL 199 (477)
Q Consensus 184 -~~~P~~~lid~~G~i~ 199 (477)
...|.+++++.++...
T Consensus 76 ~~~~P~~~i~~~~~~~~ 92 (133)
T d2djka1 76 TDKFPAFAIQEVAKNQK 92 (133)
T ss_dssp SSSSSEEEEECTTTCCB
T ss_pred cccCCcEEEEEcCCCce
Confidence 5589999998766543
|
| >d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) domain: Protein kinase c-gamma species: Rat (Rattus rattus) [TaxId: 10117]
Probab=87.18 E-value=0.18 Score=34.40 Aligned_cols=43 Identities=21% Similarity=0.442 Sum_probs=31.7
Q ss_pred ccceeec-cCCceeccCCCCCCCe---EEEEcCCCCCCccccccccc
Q 011791 406 EHELVLD-RCGVYSCDGCDEEGRV---WAFSCDECDFCLHPNCALGE 448 (477)
Q Consensus 406 ~~~~~l~-~~~~~~~~~C~~~g~~---w~~~~~~~~~~~~~~~~~~~ 448 (477)
.|.+... ...+..|+.|.+.-.+ ..|.|..|.+-.|.+|+...
T Consensus 8 ~H~F~~~~~~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~v 54 (66)
T d1tbna_ 8 KHKFRLHSYSSPTFCDHCGSLLYGLVHQGMKCSCCEMNVHRRCVRSV 54 (66)
T ss_dssp SCCEEECCSSSCCBCSSSCCBCCTTSSSCEEETTTCCEECTTTTTTS
T ss_pred CCceEEEeCCCCcCCcCCCCcccCcccCccccCcccCeEChHHhccc
Confidence 4555443 3456789999865432 36999999999999998654
|
| >d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH985, a thioredoxin species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=86.68 E-value=1.3 Score=30.94 Aligned_cols=60 Identities=20% Similarity=0.213 Sum_probs=41.4
Q ss_pred EEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCeEE
Q 011791 111 YFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLV 190 (477)
Q Consensus 111 ~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~ 190 (477)
....+.|+.|.......++..+++ |...+|.-|. +. .++. .|||..+|.++
T Consensus 5 kVlg~gC~~C~~~~~~v~~a~~e~---gi~a~v~kv~---d~----------------------~ei~-~ygVmstPalv 55 (77)
T d1iloa_ 5 QIYGTGCANCQMLEKNAREAVKEL---GIDAEFEKIK---EM----------------------DQIL-EAGLTALPGLA 55 (77)
T ss_dssp EEECSSSSTTHHHHHHHHHHHHHT---TCCEEEEEEC---SH----------------------HHHH-HHTCSSSSCEE
T ss_pred EEeCCCCccHHHHHHHHHHHHHHc---CCceEEEEeC---CH----------------------HHHH-HcCCcCCCEEE
Confidence 344899999999888777766654 5446665552 21 3354 59999999987
Q ss_pred EECCCCCccccc
Q 011791 191 IIGPDGKTLHSN 202 (477)
Q Consensus 191 lid~~G~i~~~~ 202 (477)
+ ||+++...
T Consensus 56 I---dg~vv~~G 64 (77)
T d1iloa_ 56 V---DGELKIMG 64 (77)
T ss_dssp E---TTEEEECS
T ss_pred E---CCEEEEEe
Confidence 7 67776654
|
| >d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein XCC2852 species: Xanthomonas campestris [TaxId: 339]
Probab=86.62 E-value=1.6 Score=30.22 Aligned_cols=69 Identities=16% Similarity=0.312 Sum_probs=40.3
Q ss_pred EEEecCCCccchhhHHHHHHHHHHHhcCCCcEEEEEEEcCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCcccCCeE
Q 011791 110 LYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTL 189 (477)
Q Consensus 110 l~F~a~wC~~C~~~~p~l~~l~~~~~~~g~~~~vv~is~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 189 (477)
..|..++|+.|......| .+ ..+ +++.-|.++++.+ +.+.|+.+ +|.+
T Consensus 3 tLyt~~~C~LCe~A~~~l----~~--~~~--~~~~~vdI~~d~~-----------------------l~~~y~~~-IPVl 50 (75)
T d1ttza_ 3 TLYQRDDCHLCDQAVEAL----AQ--ARA--GAFFSVFIDDDAA-----------------------LESAYGLR-VPVL 50 (75)
T ss_dssp EEEECSSCHHHHHHHHHH----HH--TTC--CCEEEEECTTCHH-----------------------HHHHHTTT-CSEE
T ss_pred EEECCCCccHHHHHHHHH----Hh--ccC--CcEEEEEccCCHH-----------------------HHHHhCCe-eeEE
Confidence 457889999997543322 22 223 4555666665543 66788766 7964
Q ss_pred EEECCCCCccccchhhHHhhcCCCCCCCChhhHHHHH
Q 011791 190 VIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELA 226 (477)
Q Consensus 190 ~lid~~G~i~~~~~~~~i~~~g~~a~P~~~~~~~~l~ 226 (477)
. ++ +|..+ .+||+..++.++.
T Consensus 51 ~-~~-~~~~l--------------~w~fd~~~l~~~L 71 (75)
T d1ttza_ 51 R-DP-MGREL--------------DWPFDAPRLRAWL 71 (75)
T ss_dssp E-CT-TCCEE--------------ESCCCHHHHHHHH
T ss_pred E-EC-CeeEE--------------cCccCHHHHHHHH
Confidence 3 33 33332 2467777766653
|
| >d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) domain: Beta-chimaerin, middle domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.31 E-value=0.35 Score=32.45 Aligned_cols=35 Identities=20% Similarity=0.469 Sum_probs=28.2
Q ss_pred CCceeccCCCCCC--C-eEEEEcCCCCCCccccccccc
Q 011791 414 CGVYSCDGCDEEG--R-VWAFSCDECDFCLHPNCALGE 448 (477)
Q Consensus 414 ~~~~~~~~C~~~g--~-~w~~~~~~~~~~~~~~~~~~~ 448 (477)
..+..|+.|.+.- . ...|.|..|.+..|.+|....
T Consensus 13 ~~pt~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~v 50 (62)
T d1xa6a3 13 RGPHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKHV 50 (62)
T ss_dssp SSCCBCTTTCCBCCTTTTCEECCSSSCCCBCTGGGTTS
T ss_pred CCCCCCcccCccccccccCeEEcCCCCchhhHHHHhhC
Confidence 4567899998853 2 358999999999999998654
|
| >d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: C-terminal, Grx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=85.02 E-value=0.69 Score=31.90 Aligned_cols=19 Identities=16% Similarity=0.051 Sum_probs=14.4
Q ss_pred EEEecCCCccchhhHHHHH
Q 011791 110 LYFSMSSYKASAEFTPRLV 128 (477)
Q Consensus 110 l~F~a~wC~~C~~~~p~l~ 128 (477)
+.|+.++|++|......|.
T Consensus 8 ~iYs~~~C~~C~~ak~lL~ 26 (74)
T d1nm3a1 8 SIFTKPGCPFCAKAKQLLH 26 (74)
T ss_dssp EEEECSSCHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHH
Confidence 5588999999987665443
|