Citrus Sinensis ID: 011794

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------
MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPPQGLMV
cccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHccccccHHHHHHHHHHHHHHccccEEEEEccccccccEEEEEcccccccccccccccccccEEEEcccEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHccEEEEEccccccccccccccccccEEEEEccccEEEcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccEEEEEEcccccHHHHHHHcHHHHHHHHHHHHHHHccccccHHHHHHHHHccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEHHcccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
cHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcEccccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccEEEEcccccccEEEEEccEEEcccEcccccccEccccEEEEEccEEEcEEcEEccHHHcHHHHHHHHHHHccEEEEEcEEcHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHccccEEHHHccccccccccccEEEEEEEEccccEEEEEEcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHcEEEcccHHHHHHHHHccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHccccEEEEccccEEEEccccccEEEHHHHHHHHHHHHHHHHHHHcEEEEEEEccccccccccccccccc
MENAGAALIREVASktndsagdgtTTASVLAREIIKLGLLsvtsganpvslkrgidKTVHGLVEELEKrarpiegrddiKAVAtisagnddlIGTMIADAidkvgpdgvlsiessssfetTVEVEegmeidrgyispqfvtnpEKLIVEFENARVLVTDQKISAIKDIIPLLekttqlraPLLIIAEDVTGEALATLVVNKLRGILNVaaikapgfGERRKALLQDIAIVTgaefqagdlgllieNTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAetdsvydsEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAieegivpgggAALVHLSDHVPAIKDKLEDADERLGADIVQKALVapasliahnagveGEVVVEKVKdsewttgyNAMTDKYENMLqagvidpakVTRCALQNAASVAGMVLTTQAIvvekpkpktpvaappqglmv
MENAGAALIREvasktndsagdgTTTASVLAREIIKLGllsvtsganpvslkrgidktvHGLVEElekrarpiegrddikavatisagnddlIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENtsveqlgtarkvtirkdsttiiadaaskdeIQARIAQLKKElaetdsvydsEKLAERIAKLSGGVAVIKVgaateteledrklRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIahnagvegevvvEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAivvekpkpktpvaappqglmv
MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLsiessssfettveveeGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAgvegevvvekvkDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIvvekpkpktpvaappQGLMV
**************************ASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELE*****IEGRDDIKAVATISAGNDDLIGTMIADAIDKV*************************IDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAA****IQARIAQL*********VYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVV******************
MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEK********DDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVV******************
MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPK**************
MEN*GAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPK**************
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MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASxxxxxxxxxxxxxxxxxxxxxYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPPQGLMV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query477 2.2.26 [Sep-21-2011]
P21239546 RuBisCO large subunit-bin N/A no 1.0 0.873 0.890 0.0
P08926587 RuBisCO large subunit-bin N/A no 1.0 0.812 0.890 0.0
P21238586 Chaperonin 60 subunit alp yes no 1.0 0.813 0.872 0.0
P08823543 RuBisCO large subunit-bin N/A no 0.997 0.876 0.844 0.0
P08824495 RuBisCO large subunit-bin N/A no 0.928 0.894 0.918 0.0
P34794583 RuBisCO large subunit-bin N/A no 0.995 0.814 0.861 0.0
Q42694580 RuBisCO large subunit-bin N/A no 0.972 0.8 0.745 0.0
Q2JKV7539 60 kDa chaperonin 2 OS=Sy yes no 0.995 0.881 0.594 1e-165
B0CFQ6558 60 kDa chaperonin 1 OS=Ac yes no 0.981 0.838 0.619 1e-165
Q2JXD4542 60 kDa chaperonin 1 OS=Sy yes no 0.991 0.872 0.599 1e-164
>sp|P21239|RUB1_BRANA RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2 Back     alignment and function desciption
 Score =  854 bits (2207), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/477 (89%), Positives = 457/477 (95%)

Query: 1   MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVH 60
           MENAGAALIREVASKTNDSAGDGTTTASVLAREIIK GLLSVTSGANPVSLKRGIDKTV 
Sbjct: 70  MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKHGLLSVTSGANPVSLKRGIDKTVQ 129

Query: 61  GLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFET 120
            L+EELEKRARP++G  DIKAVATISAGND+L+GTMIADAIDKVGPDGVLSIESSSSFET
Sbjct: 130 ALIEELEKRARPVKGGSDIKAVATISAGNDELVGTMIADAIDKVGPDGVLSIESSSSFET 189

Query: 121 TVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRA 180
           TVEVEEGMEIDRGYISPQFVTNPEKL+VEFENARVL+TDQKI+AIKDIIP+LEKTTQLRA
Sbjct: 190 TVEVEEGMEIDRGYISPQFVTNPEKLLVEFENARVLITDQKITAIKDIIPILEKTTQLRA 249

Query: 181 PLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDL 240
           PLLIIAEDVTGEALATLVVNKLRG+LNV A+KAPGFGERRKA+LQDIAI+TGAE+QA D+
Sbjct: 250 PLLIIAEDVTGEALATLVVNKLRGVLNVVAVKAPGFGERRKAMLQDIAILTGAEYQALDM 309

Query: 241 GLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKL 300
           GLL+ENT+++QLG ARKVTI KDSTT+IADAASKDE+QARI+QLKKEL+ETDSVYDSEKL
Sbjct: 310 GLLVENTTIDQLGIARKVTISKDSTTLIADAASKDELQARISQLKKELSETDSVYDSEKL 369

Query: 301 AERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDH 360
           AERIAKL+GGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGA LVHLS  
Sbjct: 370 AERIAKLAGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGATLVHLSTV 429

Query: 361 VPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTD 420
           +PAIK+KLEDADERLGADIVQKALVAPA+LIA NAG+EGEVVVEK+  SEW  GYNAMTD
Sbjct: 430 IPAIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIMFSEWEIGYNAMTD 489

Query: 421 KYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPPQGLMV 477
            YEN+L+AGVIDPAKVTRCALQNAASVAGMVLTTQAIVV+KPKPK P AAPPQGLMV
Sbjct: 490 TYENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPTAAPPQGLMV 546
This protein binds RuBisCO small and large subunits and is implicated in the assembly of the enzyme oligomer.
Brassica napus (taxid: 3708)
>sp|P08926|RUBA_PEA RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2 Back     alignment and function description
>sp|P21238|CPNA1_ARATH Chaperonin 60 subunit alpha 1, chloroplastic OS=Arabidopsis thaliana GN=CPN60A1 PE=1 SV=2 Back     alignment and function description
>sp|P08823|RUBA_WHEAT RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1 Back     alignment and function description
>sp|P08824|RUBA_RICCO RuBisCO large subunit-binding protein subunit alpha (Fragment) OS=Ricinus communis PE=2 SV=1 Back     alignment and function description
>sp|P34794|RUB2_BRANA RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica napus PE=2 SV=1 Back     alignment and function description
>sp|Q42694|RUBA_CHLRE RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1 Back     alignment and function description
>sp|Q2JKV7|CH602_SYNJB 60 kDa chaperonin 2 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=groL2 PE=3 SV=1 Back     alignment and function description
>sp|B0CFQ6|CH601_ACAM1 60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1 Back     alignment and function description
>sp|Q2JXD4|CH601_SYNJA 60 kDa chaperonin 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query477
224104681 586 predicted protein [Populus trichocarpa] 1.0 0.813 0.922 0.0
359479362 586 PREDICTED: ruBisCO large subunit-binding 1.0 0.813 0.916 0.0
224132004 587 predicted protein [Populus trichocarpa] 0.993 0.807 0.919 0.0
1351030546 RecName: Full=RuBisCO large subunit-bind 1.0 0.873 0.890 0.0
449456032 583 PREDICTED: ruBisCO large subunit-binding 0.997 0.816 0.901 0.0
84468456 588 putative rubisco subunit binding-protein 1.0 0.811 0.890 0.0
356542646 584 PREDICTED: ruBisCO large subunit-binding 1.0 0.816 0.909 0.0
356539332 584 PREDICTED: ruBisCO large subunit-binding 1.0 0.816 0.907 0.0
84468296 588 putative rubisco subunit binding-protein 1.0 0.811 0.888 0.0
84468288 578 putative rubisco subunit binding-protein 1.0 0.825 0.888 0.0
>gi|224104681|ref|XP_002313525.1| predicted protein [Populus trichocarpa] gi|222849933|gb|EEE87480.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  877 bits (2265), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/477 (92%), Positives = 463/477 (97%)

Query: 1   MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVH 60
           MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVS+K+GIDKTV 
Sbjct: 110 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSIKKGIDKTVQ 169

Query: 61  GLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFET 120
           GLVEELEKRARP++GRDDIKAVATISAGND+LIGTMIADAIDKVGPDGVLSIESSSSFET
Sbjct: 170 GLVEELEKRARPVKGRDDIKAVATISAGNDELIGTMIADAIDKVGPDGVLSIESSSSFET 229

Query: 121 TVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRA 180
           TVEVEEGMEIDRGYISPQFVTNPEKLI  FENARVLVTDQKISAIKDIIPLLEKTTQLR+
Sbjct: 230 TVEVEEGMEIDRGYISPQFVTNPEKLICVFENARVLVTDQKISAIKDIIPLLEKTTQLRS 289

Query: 181 PLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDL 240
           PLLIIAEDVTGEALATLVVNKLRGILNV+AIKAPGFGERRKA+LQDIAI+TGAEFQA DL
Sbjct: 290 PLLIIAEDVTGEALATLVVNKLRGILNVSAIKAPGFGERRKAMLQDIAILTGAEFQASDL 349

Query: 241 GLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKL 300
           GL IENTS+EQLG ARKVTI KDSTTIIADAASKDE+QARIAQLKKEL+ETDSVYDSEKL
Sbjct: 350 GLSIENTSIEQLGLARKVTISKDSTTIIADAASKDELQARIAQLKKELSETDSVYDSEKL 409

Query: 301 AERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDH 360
           AERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLS H
Sbjct: 410 AERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTH 469

Query: 361 VPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTD 420
           VPAIK+K++DADERLGADIVQKALVAPASLIA NAG+EGEVVVEK+K+SEW  GYNAMTD
Sbjct: 470 VPAIKEKIKDADERLGADIVQKALVAPASLIAQNAGIEGEVVVEKLKESEWEMGYNAMTD 529

Query: 421 KYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPPQGLMV 477
           KYEN+++AGVIDPAKVTRCALQN+ASVAGMVLTTQAIVVEKPKP+TP AA PQGL V
Sbjct: 530 KYENLVEAGVIDPAKVTRCALQNSASVAGMVLTTQAIVVEKPKPRTPAAASPQGLTV 586

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359479362|ref|XP_002277357.2| PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224132004|ref|XP_002328161.1| predicted protein [Populus trichocarpa] gi|222837676|gb|EEE76041.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|1351030|sp|P21239.2|RUB1_BRANA RecName: Full=RuBisCO large subunit-binding protein subunit alpha, chloroplastic; AltName: Full=60 kDa chaperonin subunit alpha; AltName: Full=CPN-60 alpha; Flags: Precursor gi|289365|gb|AAA32979.1| 60-kDa chaperonin-60 alpha-polypeptide precursor, partial [Brassica napus] Back     alignment and taxonomy information
>gi|449456032|ref|XP_004145754.1| PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like [Cucumis sativus] gi|449496181|ref|XP_004160065.1| PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|84468456|dbj|BAE71311.1| putative rubisco subunit binding-protein alpha subunit [Trifolium pratense] Back     alignment and taxonomy information
>gi|356542646|ref|XP_003539777.1| PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|356539332|ref|XP_003538152.1| PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|84468296|dbj|BAE71231.1| putative rubisco subunit binding-protein alpha subunit [Trifolium pratense] gi|84468304|dbj|BAE71235.1| putative rubisco subunit binding-protein alpha subunit [Trifolium pratense] gi|84468426|dbj|BAE71296.1| putative rubisco subunit binding-protein alpha subunit [Trifolium pratense] Back     alignment and taxonomy information
>gi|84468288|dbj|BAE71227.1| putative rubisco subunit binding-protein alpha subunit [Trifolium pratense] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query477
TAIR|locus:2057841586 CPN60A "chaperonin-60alpha" [A 1.0 0.813 0.794 4.6e-192
TAIR|locus:2144955575 Cpn60alpha2 "chaperonin-60alph 0.958 0.794 0.585 2.4e-140
UNIPROTKB|Q05972541 groL1 "60 kDa chaperonin 1" [S 0.947 0.835 0.535 2.1e-123
TIGR_CMR|CJE_1356545 CJE_1356 "co-chaperonin GroEL" 0.945 0.827 0.528 6e-119
TIGR_CMR|CHY_0807540 CHY_0807 "chaperonin GroL" [Ca 0.953 0.842 0.525 3.3e-118
TIGR_CMR|GSU_3340544 GSU_3340 "60 kDa chaperonin" [ 0.949 0.832 0.508 1.8e-117
TIGR_CMR|BA_0267544 BA_0267 "chaperonin, 60 kDa" [ 0.947 0.830 0.524 7.9e-117
TIGR_CMR|SPO_0887546 SPO_0887 "chaperonin, 60 kDa" 0.951 0.831 0.496 1.3e-114
UNIPROTKB|P0A335540 groL "60 kDa chaperonin" [Stre 0.947 0.837 0.504 1.9e-113
TIGR_CMR|CBU_1718552 CBU_1718 "chaperonin, 60 kDa" 0.951 0.822 0.477 4.1e-113
TAIR|locus:2057841 CPN60A "chaperonin-60alpha" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1861 (660.2 bits), Expect = 4.6e-192, P = 4.6e-192
 Identities = 379/477 (79%), Positives = 413/477 (86%)

Query:     1 MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVH 60
             MENAGAALIREVASKTNDSAGDGTTTAS+LAREIIK GLLSVTSGANPVSLKRGIDKTV 
Sbjct:   110 MENAGAALIREVASKTNDSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQ 169

Query:    61 GLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXX 120
             GL+EEL+K+ARP++GRDDI+AVA+ISAGNDDLIG+MIADAIDKVGPDGVL          
Sbjct:   170 GLIEELQKKARPVKGRDDIRAVASISAGNDDLIGSMIADAIDKVGPDGVLSIESSSSFET 229

Query:   121 XXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRA 180
                   GMEIDRGYISPQFVTNPEKL+ EFENARVL+TDQKI+AIKDIIP+LEKTTQLRA
Sbjct:   230 TVEVEEGMEIDRGYISPQFVTNPEKLLAEFENARVLITDQKITAIKDIIPILEKTTQLRA 289

Query:   181 PLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDL 240
             PLLIIAEDVTGEALATLVVNKLRG+LNV A+KAPGFGERRKA+LQDIAI+TGAE+ A D+
Sbjct:   290 PLLIIAEDVTGEALATLVVNKLRGVLNVVAVKAPGFGERRKAMLQDIAILTGAEYLAMDM 349

Query:   241 GLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKL 300
              LL+EN +++QLG ARKVTI KDSTT+IADAASKDE+QARIAQLKKEL ETDSVYDSEKL
Sbjct:   350 SLLVENATIDQLGIARKVTISKDSTTLIADAASKDELQARIAQLKKELFETDSVYDSEKL 409

Query:   301 AERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDH 360
             AERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLS  
Sbjct:   410 AERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTV 469

Query:   361 VPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWTTGYNAMTD 420
             +PAIK+  EDADERLGADIVQKAL++PA+LIA NA             S+W  GYNAMTD
Sbjct:   470 IPAIKETFEDADERLGADIVQKALLSPAALIAQNAGVEGEVVVEKIMFSDWENGYNAMTD 529

Query:   421 KYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXXQGLMV 477
              YEN+ +AGVIDPAKVTRCALQNAASVAGMVLTTQAI               +GLMV
Sbjct:   530 TYENLFEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPAAAAPEGLMV 586
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0006457 "protein folding" evidence=IEA;TAS
GO:0009507 "chloroplast" evidence=ISM;ISS;IDA
GO:0042026 "protein refolding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0009658 "chloroplast organization" evidence=RCA;IMP
GO:0009790 "embryo development" evidence=IMP
GO:0005739 "mitochondrion" evidence=IDA
GO:0009579 "thylakoid" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0016226 "iron-sulfur cluster assembly" evidence=RCA
GO:0048481 "ovule development" evidence=RCA
TAIR|locus:2144955 Cpn60alpha2 "chaperonin-60alpha2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q05972 groL1 "60 kDa chaperonin 1" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1356 CJE_1356 "co-chaperonin GroEL" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0807 CHY_0807 "chaperonin GroL" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3340 GSU_3340 "60 kDa chaperonin" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0267 BA_0267 "chaperonin, 60 kDa" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0887 SPO_0887 "chaperonin, 60 kDa" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|P0A335 groL "60 kDa chaperonin" [Streptococcus pneumoniae TIGR4 (taxid:170187)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1718 CBU_1718 "chaperonin, 60 kDa" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2JKV7CH602_SYNJBNo assigned EC number0.59450.99580.8812yesno
Q05972CH601_SYNY3No assigned EC number0.56300.97690.8613N/Ano
Q8YVS8CH602_NOSS1No assigned EC number0.62840.97900.8339yesno
B0CFQ6CH601_ACAM1No assigned EC number0.61990.98110.8387yesno
B8E1A9CH60_DICTDNo assigned EC number0.56020.98320.8717yesno
Q7WVY0CH602_ANASLNo assigned EC number0.60590.98530.8438N/Ano
P22034CH602_SYNY3No assigned EC number0.59400.97480.8423N/Ano
P34794RUB2_BRANANo assigned EC number0.86160.99580.8147N/Ano
P21238CPNA1_ARATHNo assigned EC number0.87211.00.8139yesno
P21239RUB1_BRANANo assigned EC number0.89091.00.8736N/Ano
Q42694RUBA_CHLRENo assigned EC number0.74560.97270.8N/Ano
B5YDR9CH60_DICT6No assigned EC number0.56020.98320.8717yesno
C1A8L8CH60_GEMATNo assigned EC number0.55460.96850.8508yesno
Q7TV93CH602_PROMANo assigned EC number0.54830.97270.8513yesno
A5GV53CH60_SYNR3No assigned EC number0.55200.98110.8555yesno
Q7MBB4CH602_GLOVINo assigned EC number0.59110.98740.8517yesno
P08823RUBA_WHEATNo assigned EC number0.84450.99790.8766N/Ano
Q2LTG7CH602_SYNASNo assigned EC number0.55260.96850.8477yesno
P28256CH60_GALSUNo assigned EC number0.54970.96430.8614N/Ano
A2C4I2CH602_PROM1No assigned EC number0.54480.98530.8655yesno
Q7TUS4CH602_PROMMNo assigned EC number0.54980.98110.8602yesno
Q318V6CH602_PROM9No assigned EC number0.53870.99160.8678yesno
B3DZP5CH60_METI4No assigned EC number0.55200.99160.8694yesno
B5YJN3CH60_THEYDNo assigned EC number0.56750.98320.8685yesno
Q119S1CH601_TRIEINo assigned EC number0.60860.97270.8270yesno
Q3M6L5CH602_ANAVTNo assigned EC number0.63260.97900.8339yesno
Q2RL13CH601_MOOTANo assigned EC number0.56510.98950.8756yesno
Q5N3T6CH602_SYNP6No assigned EC number0.55650.98320.8450yesno
Q2JXD4CH601_SYNJANo assigned EC number0.59910.99160.8726yesno
P0A338CH602_THEVLNo assigned EC number0.58930.97690.8581N/Ano
P0A337CH602_THEEBNo assigned EC number0.58930.97690.8581yesno
O50323CH601_THEVLNo assigned EC number0.57200.97270.8513N/Ano
Q0I7U3CH602_SYNS3No assigned EC number0.55550.96640.8489yesno
A3PES4CH602_PROM0No assigned EC number0.53660.99160.8678yesno
A5GNA9CH602_SYNPWNo assigned EC number0.56050.98110.8602yesno
A2C6Z6CH601_PROM3No assigned EC number0.55200.98110.8602yesno
P08926RUBA_PEANo assigned EC number0.89091.00.8126N/Ano
P08824RUBA_RICCONo assigned EC number0.91870.92870.8949N/Ano
Q7TTX1CH601_SYNPXNo assigned EC number0.55830.98110.8602yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query477
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 0.0
PRK00013542 PRK00013, groEL, chaperonin GroEL; Reviewed 0.0
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 0.0
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 0.0
CHL00093529 CHL00093, groEL, chaperonin GroEL 0.0
PTZ00114555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 0.0
PRK12850544 PRK12850, groEL, chaperonin GroEL; Reviewed 0.0
PRK12851541 PRK12851, groEL, chaperonin GroEL; Reviewed 0.0
PRK12852545 PRK12852, groEL, chaperonin GroEL; Reviewed 1e-174
PLN03167600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 1e-163
PRK14104546 PRK14104, PRK14104, chaperonin GroEL; Provisional 1e-154
COG0459524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 1e-130
cd00309464 cd00309, chaperonin_type_I_II, chaperonin families 1e-106
pfam00118481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 6e-96
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 5e-34
TIGR02339519 TIGR02339, thermosome_arch, thermosome, various su 2e-11
cd03343517 cd03343, cpn60, cpn60 chaperonin family 5e-09
TIGR02341518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 0.001
cd03336517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 0.004
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information 
 Score =  706 bits (1826), Expect = 0.0
 Identities = 273/460 (59%), Positives = 358/460 (77%), Gaps = 2/460 (0%)

Query: 1   MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVH 60
            EN GA L++EVASKTND AGDGTTTA+VLAR IIK GL +V +GANP+ LKRGI+K V 
Sbjct: 63  FENMGAQLVKEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVE 122

Query: 61  GLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFET 120
            +VEEL+K ++P++ +++I  VATISA  D+ IG +IA+A++KVG DGV+++E   + ET
Sbjct: 123 AVVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEEGKTLET 182

Query: 121 TVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRA 180
            +EV EGM+ DRGY+SP FVT+PEK+ VE EN  +L+TD+KIS+I++++P+LE   +   
Sbjct: 183 ELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVAKAGR 242

Query: 181 PLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDL 240
           PLLIIAEDV GEALATLVVNKLRG L V A+KAPGFG+RRKA+L+DIAI+TG    + +L
Sbjct: 243 PLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEEL 302

Query: 241 GLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKL 300
           GL +E+ ++E LG A+KV + KD TTII  A  K  I+ARIAQ++K++ ET S YD EKL
Sbjct: 303 GLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKL 362

Query: 301 AERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDH 360
            ER+AKLSGGVAVIKVG ATE EL+++K R+EDA NAT AA+EEGIVPGGG AL+  S  
Sbjct: 363 QERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEGIVPGGGVALLRASPA 422

Query: 361 VPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTD 420
           +  +  K  + DE+LG +IV++AL AP   IA NAGV+G VVVEKV +S    GY+A T 
Sbjct: 423 LDKL--KALNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPDGFGYDAATG 480

Query: 421 KYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVE 460
           +Y +M++AG+IDP KV R ALQNAASVA ++LTT+A+VV+
Sbjct: 481 EYVDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVVD 520

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. Length = 520
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 477
PRK12849542 groEL chaperonin GroEL; Reviewed 100.0
PRK12851541 groEL chaperonin GroEL; Reviewed 100.0
PRK00013542 groEL chaperonin GroEL; Reviewed 100.0
PRK12852545 groEL chaperonin GroEL; Reviewed 100.0
PRK14104546 chaperonin GroEL; Provisional 100.0
PRK12850544 groEL chaperonin GroEL; Reviewed 100.0
PTZ00114555 Heat shock protein 60; Provisional 100.0
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
TIGR02348524 GroEL chaperonin GroL. This family consists of Gro 100.0
PLN03167600 Chaperonin-60 beta subunit; Provisional 100.0
CHL00093529 groEL chaperonin GroEL 100.0
cd03335527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
TIGR02347531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
KOG0356550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
TIGR02340536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
TIGR02344525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
cd03336517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
KOG0361543 consensus Chaperonin complex component, TCP-1 eta 100.0
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
PTZ00212533 T-complex protein 1 subunit beta; Provisional 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
TIGR02346531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
TIGR02341519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
KOG0363527 consensus Chaperonin complex component, TCP-1 beta 100.0
KOG0358534 consensus Chaperonin complex component, TCP-1 delt 100.0
KOG0364527 consensus Chaperonin complex component, TCP-1 gamm 100.0
KOG0362537 consensus Chaperonin complex component, TCP-1 thet 100.0
KOG0360545 consensus Chaperonin complex component, TCP-1 alph 100.0
KOG0359520 consensus Chaperonin complex component, TCP-1 zeta 100.0
KOG0357400 consensus Chaperonin complex component, TCP-1 epsi 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 99.96
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 99.96
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 99.43
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 97.67
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=2.7e-96  Score=780.43  Aligned_cols=471  Identities=57%  Similarity=0.874  Sum_probs=452.0

Q ss_pred             CCCh----HHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCCCH
Q 011794            1 MENA----GAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGR   76 (477)
Q Consensus         1 ~~hp----~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~~~   76 (477)
                      ++||    +|+|++++|++||+++||||||+|+|+++||+++.+++++|+||+.|++||+.|++.++++|+++++|+++.
T Consensus        61 ~~hp~~~~~a~ll~~~a~~qd~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~  140 (542)
T PRK12849         61 LEDPFENLGAQLVKEVASKTNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGS  140 (542)
T ss_pred             cCCccHhHHHHHHHHHHHhcCCccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCH
Confidence            5799    999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHHhCCCCcccccCCCccccceEEEEeeEEcccccCCCCccCccccchhccceeEE
Q 011794           77 DDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVL  156 (477)
Q Consensus        77 ~~l~~va~ts~~~~~~~a~lv~~av~~v~~~~~I~i~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Il  156 (477)
                      ++|.++|+||+++++.+++++++|+..++++|.|.++.|++++|++++++|++|+++|.+|+|.+++++|++.++||+|+
T Consensus       141 ~~l~~va~ts~~~~~~l~~lv~~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Il  220 (542)
T PRK12849        141 EEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLIL  220 (542)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEE
Confidence            89999999999999999999999999999888888889999998669999999999999999998888899999999999


Q ss_pred             EeccccCCHHhHHHHHHHHHhcCCCEEEEeccccHHHHHHHHHhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEe
Q 011794          157 VTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQ  236 (477)
Q Consensus       157 l~~~~i~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~  236 (477)
                      ++|+.|++++++.++++++.+.|+||||++++|++.++++|.+|+++|+++|++|++|++++.++++++|||.+|||+++
T Consensus       221 i~d~~i~~~~~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v  300 (542)
T PRK12849        221 LTDKKISSLQDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVI  300 (542)
T ss_pred             eecCCcCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcccCCCccCCccceEEEEecccEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEe
Q 011794          237 AGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKV  316 (477)
Q Consensus       237 ~~~~~~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v  316 (477)
                      ++..+.++++++.++||+|+.|++++++++++++|++++.+..|+++++++++++.++|++++|++|++||+++++||+|
T Consensus       301 ~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~i  380 (542)
T PRK12849        301 SEDLGLKLEEVTLDDLGRAKRVTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKV  380 (542)
T ss_pred             cccccCCcccCCHHHCceeeEEEEeeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEe
Confidence            98777778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCcHHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcC
Q 011794          317 GAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAG  396 (477)
Q Consensus       317 ~G~t~~~~~e~~~~~~dal~~~~~~l~~gvvpGGGa~e~~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG  396 (477)
                      ||+|+.+++|++|+++||++++++++++|+|||||++|++++++|.+++ +.++.+ ++++++|++||+.||++||+|||
T Consensus       381 rG~t~~~l~E~er~i~DAl~~~~~a~~~g~VpGGGa~e~~ls~~L~~~~-~~~g~~-~~~i~~~a~Al~~ip~~La~NaG  458 (542)
T PRK12849        381 GAATEVELKERKDRVEDALNATRAAVEEGIVPGGGVALLRAAKALDELA-GLNGDQ-AAGVEIVRRALEAPLRQIAENAG  458 (542)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHcCeecCCCHHHHHHHHHHHHhh-CCChHH-HHHHHHHHHHHHHHHHHHHHHCC
Confidence            9999999999999999999999999999999999999999999999988 677765 79999999999999999999999


Q ss_pred             CChHHHHHHHHccCCceeEEcCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCCCCCCCCCC
Q 011794          397 VEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPPQG  474 (477)
Q Consensus       397 ~d~~~~l~~l~~~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~lL~iD~iI~~~~~~~~~~~~~~~~  474 (477)
                      +|+.+++++|++.+.++|+|+.+|++.||++.|||||+.+|.++|+.|+++|++||+||++|..+|+...| |+.-||
T Consensus       459 ~d~~~vi~~L~~~~~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~~-~~~~~~  535 (542)
T PRK12849        459 LDGSVVVAKVLELEDGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTTEALVADKPEEEDP-PGGMGG  535 (542)
T ss_pred             CCHHHHHHHHHhhCCCcceeCCCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHhHHHHHhcCCccCCC-CCCCCC
Confidence            99999999999877789999999999999999999999999999999999999999999999998876555 655555

>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query477
1we3_A543 Crystal Structure Of The Chaperonin Complex Cpn60CP 1e-125
1iok_A545 Crystal Structure Of Chaperonin-60 From Paracoccus 1e-123
1pcq_A524 Crystal Structure Of Groel-Groes Length = 524 1e-119
3c9v_A526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 1e-118
2yey_A524 Crystal Structure Of The Allosteric-Defective Chape 1e-118
1aon_A547 Crystal Structure Of The Asymmetric Chaperonin Comp 1e-118
2eu1_A548 Crystal Structure Of The Chaperonin Groel-E461k Len 1e-118
1kp8_A547 Structural Basis For Groel-Assisted Protein Folding 1e-118
1ss8_A524 Groel Length = 524 1e-118
1sx3_A525 Groel14-(Atpgammas)14 Length = 525 1e-118
1gr5_A547 Solution Structure Of Apo Groel By Cryo-Electron Mi 1e-118
1j4z_A547 Structural And Mechanistic Basis For Allostery In T 1e-118
4aaq_A548 Atp-Triggered Molecular Mechanics Of The Chaperonin 1e-117
3cau_A526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 1e-117
1grl_A548 The Crystal Structure Of The Bacterial Chaperonin G 1e-117
1oel_A547 Conformational Variability In The Refined Structure 1e-117
1sjp_A504 Mycobacterium Tuberculosis Chaperonin60.2 Length = 1e-116
3rtk_A546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 1e-116
1la1_A192 Gro-El Fragment (Apical Domain) Comprising Residues 9e-54
1fya_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 4e-53
1fy9_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 2e-52
1kid_A203 Groel (Hsp60 Class) Fragment (Apical Domain) Compri 2e-52
3osx_A201 Crystal Structure Of Apical Domain Of Insecticidal 8e-52
1jon_A155 Groel (Hsp60 Class) Fragment Comprising Residues 19 1e-41
1srv_A145 Thermus Thermophilus Groel (Hsp60 Class) Fragment ( 8e-41
1dk7_A146 Crystal Structure Of An Isolated Apical Domain Of G 1e-40
3m6c_A194 Crystal Structure Of Mycobacterium Tuberculosis Gro 2e-37
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure 
Iteration: 1

 Score =  445 bits (1145), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 241/459 (52%), Positives = 321/459 (69%), Gaps = 4/459 (0%)
Query: 1   MENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVH 60
           +EN GA L++EVASKTND AGDGTTTA+VLA+ I++ GL +V +GANP++LKRGI+K V 
Sbjct: 65  LENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVE 124
Query: 61  GLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXX 120
             VE+++  A P+E R  I+ VATISA ND  +G +IADA++KVG +G++          
Sbjct: 125 AAVEKIKALAIPVEDRKAIEEVATISA-NDPEVGKLIADAMEKVGKEGIITVEESKSLET 183
Query: 121 XXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRA 180
                 G + D+GYISP FVTNPE +    E+A +L+ ++K+S +++++P+LE+  Q   
Sbjct: 184 ELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGK 243
Query: 181 PLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDL 240
           PLLIIAEDV GEALATLVVNKLRG L+VAA+KAPGFG+RRK +L+DIA VTG    + +L
Sbjct: 244 PLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEEL 303
Query: 241 GLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKL 300
           G  +EN ++  LG A +V I KD TTI+     K++I+ARI  +KKEL  TDS Y  EKL
Sbjct: 304 GFKLENATLSMLGRAERVRITKDETTIVGGKGKKEDIEARINGIKKELETTDSEYAREKL 363
Query: 301 AERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDH 360
            ER+AKL+GGVAVI+VGAATETEL+++K R EDA NAT AA+EEGIVPGGG  L+     
Sbjct: 364 QERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEGIVPGGGVTLLRAISA 423
Query: 361 VPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXX--XXDSEWTTGYNAM 418
           V  +  KLE  DE  GA IV++AL  PA  IA NA                    G+NA 
Sbjct: 424 VEELIKKLE-GDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNPRYGFNAA 482
Query: 419 TDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 457
           T ++ +M++AG++DPAKVTR ALQNAAS+  ++LTT+A+
Sbjct: 483 TGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAV 521
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|1LA1|A Chain A, Gro-El Fragment (Apical Domain) Comprising Residues 188-379 Length = 192 Back     alignment and structure
>pdb|1FYA|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|1FY9|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|1KID|A Chain A, Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 191-376, Mutant With Ala 262 Replaced With Leu And Ile 267 Replaced With Met Length = 203 Back     alignment and structure
>pdb|3OSX|A Chain A, Crystal Structure Of Apical Domain Of Insecticidal Groel From Xenorhapdus Nematophila Length = 201 Back     alignment and structure
>pdb|1JON|A Chain A, Groel (Hsp60 Class) Fragment Comprising Residues 191-345 Length = 155 Back     alignment and structure
>pdb|1SRV|A Chain A, Thermus Thermophilus Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 192-336 Length = 145 Back     alignment and structure
>pdb|1DK7|A Chain A, Crystal Structure Of An Isolated Apical Domain Of Groel Length = 146 Back     alignment and structure
>pdb|3M6C|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Groel1 Apical Domain Length = 194 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query477
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 0.0
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 0.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 0.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 0.0
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 3e-99
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 6e-97
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 2e-70
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 3e-18
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 4e-14
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 2e-13
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 2e-13
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 4e-13
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 6e-13
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 1e-12
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 2e-12
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 2e-12
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 2e-12
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 2e-12
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 4e-12
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 1e-11
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 1e-11
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 4e-11
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 8e-11
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 2e-10
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 4e-09
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 3e-06
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 4e-09
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 6e-06
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 1e-05
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
 Score =  686 bits (1773), Expect = 0.0
 Identities = 235/474 (49%), Positives = 332/474 (70%), Gaps = 2/474 (0%)

Query: 2   ENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHG 61
           EN GA +++EVASK ND+AGDGTTTA+VLA+ II  GL +V +G NP+ LKRGIDK V  
Sbjct: 66  ENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTV 125

Query: 62  LVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETT 121
            VEEL+  + P      I  V TISA +D+ +G +IA+A+DKVG +GV+++E  +  +  
Sbjct: 126 AVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDE 185

Query: 122 VEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAP 181
           ++V EGM+ DRGY+SP F+  PE   VE E+  +L+ D+KIS I++++P+LE   +   P
Sbjct: 186 LDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKP 245

Query: 182 LLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLG 241
           LLIIAEDV GEALATLVVN +RGI+ VAA+KAPGFG+RRKA+LQDIA +TG    + ++G
Sbjct: 246 LLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIG 305

Query: 242 LLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLA 301
           + +E  ++E LG A++V I KD+TTII     +  IQ R+AQ+++++ E  S YD EKL 
Sbjct: 306 MELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQ 365

Query: 302 ERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHV 361
           ER+AKL+GGVAVIKVGAATE E++++K R+EDA +AT AA+EEG+V GGG AL+ ++  +
Sbjct: 366 ERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKL 425

Query: 362 PAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTDK 421
             ++   ++AD+ +G  +  +A+ AP   I  N G E  VV   VK  +   GYNA T++
Sbjct: 426 ADLRG--QNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEE 483

Query: 422 YENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPPQGL 475
           Y NM+  G++DP KVTR ALQ AASVAG+++TT+ +V + PK          G+
Sbjct: 484 YGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKNDAADLGAAGGM 537
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Length = 201 Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Length = 194 Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Length = 145 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query477
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 100.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 100.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 100.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 100.0
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 100.0
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 99.91
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 99.83
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
Probab=100.00  E-value=1.5e-102  Score=826.75  Aligned_cols=465  Identities=50%  Similarity=0.799  Sum_probs=450.2

Q ss_pred             CCCh----HHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhccccCCCH
Q 011794            1 MENA----GAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGR   76 (477)
Q Consensus         1 ~~hp----~akll~~~a~~qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~~~~~   76 (477)
                      ++||    +|||++++|++||+++||||||+|+|+++||+++.+++++|+||+.|++||++|++.++++|+++++|++++
T Consensus        61 ~~hp~en~~Akll~e~a~~qd~e~GDGTTtvvVLA~~Ll~ea~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~  140 (547)
T 1kp8_A           61 LEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCSDS  140 (547)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCBCCCSH
T ss_pred             ccChhhhHHHHHHHHHHHhhccccCCCcchhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCH
Confidence            5899    999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHHhCCCCcccccCCCccccceEEEEeeEEcccccCCCCccCccccchhccceeEE
Q 011794           77 DDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVL  156 (477)
Q Consensus        77 ~~l~~va~ts~~~~~~~a~lv~~av~~v~~~~~I~i~~g~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Il  156 (477)
                      +.|.++|++|++++++|++++++|+.+++++|.|++++|++++||+++++|++|+++|.||||+++|++|+.+++||+|+
T Consensus       141 e~l~~vA~iS~~~~~~i~~liadAv~~V~~dg~I~Ve~G~~~~ds~~lveG~~fdkg~~~p~~vt~~~~m~~~lenp~Il  220 (547)
T 1kp8_A          141 KAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFIL  220 (547)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTSEEEEECCSSSSCEEEEESCEEESCCBSSTTCCSBTTTTBEEEESCEEE
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHhCcCCcEEEEeCCccccccEEEecEEEecCccccccccCcccCceEecCceEE
Confidence            99999999999999999999999999999999999999999999989999999999999999999999999999999999


Q ss_pred             EeccccCCHHhHHHHHHHHHhcCCCEEEEeccccHHHHHHHHHhhhcccceEEEeeCCCcchhhhHHHHHHHHHhCceEe
Q 011794          157 VTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQ  236 (477)
Q Consensus       157 l~~~~i~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~n~~~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~  236 (477)
                      ++|++|+++++++++++++.++|+||||++++|+++++++|+.|+++|.++|+|||+|+|+++++++|+|||++|||+++
T Consensus       221 l~d~~Is~~~~l~~~le~i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii  300 (547)
T 1kp8_A          221 LADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVI  300 (547)
T ss_dssp             CEESEECCGGGTHHHHHHHHGGGCCEEEEESEECHHHHHHHHHHGGGTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred             EEcCcCCCHHHHHHHHHHHHhcCCCEEEECCCcCHHHHHHHHhcccccceeEEEEeccccccccHHHHHHHHHHhCCeEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcccCCCccCCccceEEEEecccEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEe
Q 011794          237 AGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKV  316 (477)
Q Consensus       237 ~~~~~~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~l~~r~~~l~~~~~tI~v  316 (477)
                      +++.++++++++.++||+|+.|++++++++||++|+++..+++|+++|+.+++.+.++|+|++|++|+++|+|++|||+|
T Consensus       301 ~~~~g~~l~~~~~~~LG~a~~v~~~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~~~~~tI~v  380 (547)
T 1kp8_A          301 SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKV  380 (547)
T ss_dssp             EGGGTCCSTTCCTTTSEEEEEEEECSSCEEEEEECCCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHHHCEEEEEC
T ss_pred             cccccCCcccCCHHHCCceeEEEEccceEEEEcCCCCHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCeEEEEE
Confidence            98788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCcHHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHcC
Q 011794          317 GAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAG  396 (477)
Q Consensus       317 ~G~t~~~~~e~~~~~~dal~~~~~~l~~gvvpGGGa~e~~~s~~L~~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG  396 (477)
                      ||+|+.+++|++|+++||++++|+++++|+|||||++|++++++|++++. .++. +++++++|++||+.||++|++|||
T Consensus       381 rG~te~~l~E~kr~i~DAl~~~r~av~~giVpGGGa~e~~~s~~L~~~~~-~~g~-~q~~i~~~a~ALe~ip~~la~NaG  458 (547)
T 1kp8_A          381 GAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRG-QNAD-QNVGIKVALRAMEAPLRQIVLNCG  458 (547)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHHHHCEEETTTHHHHHHHHHTTTCCC-SSHH-HHHHHHHHHHHTTHHHHHHHHHHT
T ss_pred             cCCcHhHHHHHHHHHHHHHHHHHHhccCCEEeCCcHHHHHHHHHHHHHhc-cCch-HHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999876 5554 589999999999999999999999


Q ss_pred             CChHHHHHHHHccCCceeEEcCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCCC
Q 011794          397 VEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTP  467 (477)
Q Consensus       397 ~d~~~~l~~l~~~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~lL~iD~iI~~~~~~~~~  467 (477)
                      +|+.+++++|++.+.++|||..+|++.||++.|||||+.||+++|+.|+|+|++|||+|++|..+|+++.|
T Consensus       459 ~d~~~vv~~l~~~~~~~G~d~~~g~~~dm~~~gI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~~~~  529 (547)
T 1kp8_A          459 EEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKNDAA  529 (547)
T ss_dssp             SCHHHHHHHHHHSCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECCC----
T ss_pred             CCHHHHHHHHHhcCCCEeEeCCCCccccchhcCceechHhHHHHHHHHHHHHHHHHhHhheeecCCccCCC
Confidence            99999999999877889999999999999999999999999999999999999999999999998887633
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 477
d1sjpa2184 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium 5e-82
d1kida_193 c.8.5.1 (A:) GroEL, A domain {Escherichia coli [Ta 4e-81
d1ioka2176 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus de 2e-79
d1srva_145 c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus 8e-67
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 2e-41
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 2e-16
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 2e-38
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 1e-22
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 2e-31
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 2e-15
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 4e-24
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 8e-17
d1sjpa389 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {My 5e-22
d1sjpa389 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {My 0.002
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 3e-20
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 5e-17
d1we3a386 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Th 6e-17
d1we3a386 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Th 0.002
d1kp8a397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es 7e-16
d1kp8a397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es 5e-08
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 7e-16
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 4e-15
d1ioka397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa 7e-15
d1ioka397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa 2e-07
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 184 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]

 Score =  249 bits (638), Expect = 5e-82
 Identities = 98/184 (53%), Positives = 131/184 (71%)

Query: 127 GMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIA 186
           GM  D+GYIS  FVT+PE+     E+  +L+   K+S +KD++PLLEK      PLLIIA
Sbjct: 1   GMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIA 60

Query: 187 EDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIEN 246
           EDV GEAL+TLVVNK+RG     A+KAPGFG+RRKA+LQD+AI+TG +  + ++GL +EN
Sbjct: 61  EDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLEN 120

Query: 247 TSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAK 306
             +  LG ARKV + KD TTI+  A   D I  R+AQ+++E+  +DS YD EKL ER+AK
Sbjct: 121 ADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDREKLQERLAK 180

Query: 307 LSGG 310
           L+GG
Sbjct: 181 LAGG 184
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Length = 193 Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Length = 176 Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Length = 145 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 89 Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 89 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Length = 86 Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Length = 86 Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query477
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 100.0
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 100.0
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 100.0
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 99.97
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 99.96
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.95
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 99.86
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 99.85
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.82
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.81
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 99.81
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 99.8
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.67
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.65
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 99.5
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 99.45
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 99.35
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 99.07
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 99.02
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 98.97
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 98.59
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 98.56
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 98.54
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 96.45
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 95.19
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7e-38  Score=285.73  Aligned_cols=189  Identities=53%  Similarity=0.871  Sum_probs=184.6

Q ss_pred             EEEEeeEEcccccCCCCccCccccchhccceeEEEeccccCCHHhHHHHHHHHHhcCCCEEEEeccccHHHHHHHHHhhh
Q 011794          123 EVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKL  202 (477)
Q Consensus       123 ~~i~G~~~~~~~~~p~~~~~~~~~~~~~~~~~Ill~~~~i~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~n~~  202 (477)
                      ++.+|+.|++||.||||+++++++..+++||+||++|.+|++.++++|+++.+.+.+.||+|++++|+++||+.|+.|++
T Consensus         5 ~~tEG~~~d~Gy~SpyFvtd~~~~~~~l~~p~ILitd~kI~~~~~i~p~Le~~~~~~~pLlIIA~di~~~aL~~Lv~N~~   84 (193)
T d1kida_           5 RGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTM   84 (193)
T ss_dssp             SCCCCEEESCCCSCGGGCCBTTTTBEEEESCEEEEBSSEECCHHHHHHHHHHHHHHTCCEEEEESEECHHHHHHHHHHHH
T ss_pred             cccCCeeecCCcCCccceeCCCCCEEEecCcEEEEEcCCcccHHHHHHHHHHHHhhCCcEEEEeccccHHHHHHHHHhhh
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceEEEeeCCCcchhhhHHHHHHHHHhCceEecCCCCCcccCCCccCCccceEEEEecccEEEEeCCCChHHHHHHHH
Q 011794          203 RGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIA  282 (477)
Q Consensus       203 ~~~~~v~av~~~~~~~~~~~~l~~ia~~tGa~~~~~~~~~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~i~  282 (477)
                      +|+++|+||++|+||+.+++.|+|||.+|||++++++.+.++++++.++||+|+++.+++++++++.+.++++.+++|++
T Consensus        85 kg~l~v~aVkaPgfG~~r~~~LeDlA~~TGa~vi~~~~g~~l~~~~~~~LG~~~kv~itk~~T~ii~g~g~~~~I~~Ri~  164 (193)
T d1kida_          85 RGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVA  164 (193)
T ss_dssp             TTSCCEEEEECCSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEECSSCEEEEEECCCHHHHHHHHH
T ss_pred             ccCcceeeccCCCcChhHHHHHHHHHHHcCCEEechhcccccccCCHhHcCcccEEEEecCceEEEcCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999989999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccchhhHHHHHHHHHHhcCCe
Q 011794          283 QLKKELAETDSVYDSEKLAERIAKLSGGV  311 (477)
Q Consensus       283 ~l~~~l~~~~~~~~~~~l~~r~~~l~~~~  311 (477)
                      +|+.+++.+.+++++++|++|+++|+|++
T Consensus       165 ~Lk~~l~~~~~~~~~e~L~eRlakLsGGV  193 (193)
T d1kida_         165 QIRQQIEEATSDYDREKLQERVAKLAGGV  193 (193)
T ss_dssp             HHHHHHHHCCSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999864
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure