Citrus Sinensis ID: 011800
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 477 | ||||||
| 224117960 | 467 | predicted protein [Populus trichocarpa] | 0.974 | 0.995 | 0.830 | 0.0 | |
| 224113753 | 465 | predicted protein [Populus trichocarpa] | 0.974 | 1.0 | 0.830 | 0.0 | |
| 297741763 | 717 | unnamed protein product [Vitis vinifera] | 0.979 | 0.651 | 0.807 | 0.0 | |
| 359494826 | 617 | PREDICTED: DUF246 domain-containing prot | 0.979 | 0.756 | 0.807 | 0.0 | |
| 356520091 | 583 | PREDICTED: DUF246 domain-containing prot | 0.974 | 0.797 | 0.810 | 0.0 | |
| 255554775 | 642 | conserved hypothetical protein [Ricinus | 0.995 | 0.739 | 0.824 | 0.0 | |
| 356564474 | 579 | PREDICTED: DUF246 domain-containing prot | 0.974 | 0.803 | 0.802 | 0.0 | |
| 357480375 | 620 | hypothetical protein MTR_4g132590 [Medic | 0.966 | 0.743 | 0.798 | 0.0 | |
| 449455459 | 672 | PREDICTED: DUF246 domain-containing prot | 0.974 | 0.691 | 0.780 | 0.0 | |
| 449513539 | 672 | PREDICTED: DUF246 domain-containing prot | 0.974 | 0.691 | 0.780 | 0.0 |
| >gi|224117960|ref|XP_002331523.1| predicted protein [Populus trichocarpa] gi|222873747|gb|EEF10878.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 822 bits (2123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/465 (83%), Positives = 423/465 (90%)
Query: 13 QNKREPKDLWREPVVPASAWMPCADQRNWEPSGGNNGYILVTANGGMNQQRVAICNAVVL 72
QNK+EPKDLW+EP VPASAW PCAD R+W PS GNNGYILVTANGGMNQQRVA+CNAVVL
Sbjct: 3 QNKQEPKDLWQEPFVPASAWRPCADHRDWNPSEGNNGYILVTANGGMNQQRVAVCNAVVL 62
Query: 73 ARLLNATLVVPKFMYSSVWRDVSQFSDIYQEEHFINYLTPDIRMVKELPNKLQSLDLEAI 132
ARLLN++LV+P+FMYSSVWRDVSQFS IYQEEHFINYLTPDIR+VKELP +LQSLDLEAI
Sbjct: 63 ARLLNSSLVIPRFMYSSVWRDVSQFSHIYQEEHFINYLTPDIRIVKELPKELQSLDLEAI 122
Query: 133 GSVVTDVDIPKESKPSFYLKNIIPILLRNGVVHLLGFGNRLAFDPIPFQLQRLRCRCNFH 192
GS VTDVD+PKES+PSFYLK+I+PILL+N VVH +GFGNRLAFDPIPFQLQRLRCRCNFH
Sbjct: 123 GSTVTDVDVPKESEPSFYLKSILPILLKNRVVHFVGFGNRLAFDPIPFQLQRLRCRCNFH 182
Query: 193 ALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRGQSAKASRYLAIHL 252
ALQF PKIQETGALLL+RLRKH H G LDHYL GP+A+ +K K G + KASRYLAIHL
Sbjct: 183 ALQFVPKIQETGALLLQRLRKHATHPGSLDHYLTGPFAEPNLKGKVGHAVKASRYLAIHL 242
Query: 253 RFEIDMVAHSLCEFGGGEEERQELEKYREIHFPALAHLKKTTKLPSPAEIRSEGLCPLTP 312
RFEIDM+AHSLCE+GGGEEER+ELE YREIHFPAL HLKKTT+L SPA +RSEGLCPLTP
Sbjct: 243 RFEIDMLAHSLCEYGGGEEERKELEAYREIHFPALTHLKKTTELRSPALLRSEGLCPLTP 302
Query: 313 EEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNF 372
EEAVLMLAALGF RKTH+F+AGA IYGG RL AL SLYP LVTKE LLSATEL+PF NF
Sbjct: 303 EEAVLMLAALGFRRKTHMFIAGANIYGGRSRLTALTSLYPNLVTKEKLLSATELKPFMNF 362
Query: 373 SSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKMPTIRPNKRRLAAIFVKN 432
SSQLAALDFI CTA++AFAMTDSGSQLSSLVSG+RIYYGGGKMPTIRPNKRRLA IF+KN
Sbjct: 363 SSQLAALDFIACTASDAFAMTDSGSQLSSLVSGFRIYYGGGKMPTIRPNKRRLADIFMKN 422
Query: 433 STIEWKVFEQRVRKAVRQTKHIQSRSKGRSVYRYPRCKECMCPTD 477
+TIEWK+FEQRVRKAVRQTKH+ R K RSVYRYPRCKECMC T+
Sbjct: 423 NTIEWKIFEQRVRKAVRQTKHVFERPKARSVYRYPRCKECMCLTE 467
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224113753|ref|XP_002316562.1| predicted protein [Populus trichocarpa] gi|222859627|gb|EEE97174.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|297741763|emb|CBI32992.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|359494826|ref|XP_002271717.2| PREDICTED: DUF246 domain-containing protein At1g04910-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356520091|ref|XP_003528699.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|255554775|ref|XP_002518425.1| conserved hypothetical protein [Ricinus communis] gi|223542270|gb|EEF43812.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356564474|ref|XP_003550479.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357480375|ref|XP_003610473.1| hypothetical protein MTR_4g132590 [Medicago truncatula] gi|357497961|ref|XP_003619269.1| DUF246 domain-containing protein [Medicago truncatula] gi|355494284|gb|AES75487.1| DUF246 domain-containing protein [Medicago truncatula] gi|355511528|gb|AES92670.1| hypothetical protein MTR_4g132590 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|449455459|ref|XP_004145470.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449513539|ref|XP_004164352.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 477 | ||||||
| TAIR|locus:2027129 | 652 | AT1G62330 [Arabidopsis thalian | 1.0 | 0.731 | 0.730 | 4.1e-191 | |
| TAIR|locus:2008935 | 590 | AT1G11990 [Arabidopsis thalian | 0.501 | 0.405 | 0.698 | 5.5e-169 | |
| TAIR|locus:2029984 | 611 | AT1G29200 [Arabidopsis thalian | 0.985 | 0.769 | 0.536 | 2e-134 | |
| TAIR|locus:2049527 | 567 | AT2G01480 [Arabidopsis thalian | 0.498 | 0.419 | 0.353 | 9.7e-74 | |
| TAIR|locus:2079281 | 557 | AT3G26370 [Arabidopsis thalian | 0.427 | 0.366 | 0.369 | 4.7e-72 | |
| TAIR|locus:2130938 | 549 | AT4G16650 [Arabidopsis thalian | 0.423 | 0.367 | 0.387 | 1.1e-70 | |
| TAIR|locus:2006852 | 562 | AT1G14970 [Arabidopsis thalian | 0.501 | 0.425 | 0.348 | 1.1e-70 | |
| TAIR|locus:2121793 | 551 | RHS17 "root hair specific 17" | 0.404 | 0.350 | 0.406 | 3.7e-70 | |
| TAIR|locus:2014666 | 568 | AT1G35510 [Arabidopsis thalian | 0.408 | 0.343 | 0.422 | 4e-70 | |
| TAIR|locus:2168297 | 504 | AT5G65470 [Arabidopsis thalian | 0.951 | 0.900 | 0.348 | 4.9e-69 |
| TAIR|locus:2027129 AT1G62330 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1852 (657.0 bits), Expect = 4.1e-191, P = 4.1e-191
Identities = 349/478 (73%), Positives = 396/478 (82%)
Query: 1 MLALAAHALAEGQNKREPKDLWREPVVPASAWMPCADQRNWEPSGGNNGYILVTANGGMN 60
+LA AAHALAEGQNK EPK+LWREP A AW PCADQR+W+PS G NGYI+VTANGG+N
Sbjct: 175 LLAYAAHALAEGQNKLEPKELWREPKDQALAWKPCADQRSWKPSDGKNGYIMVTANGGIN 234
Query: 61 QQRVAICNAVVLARLLNATLVVPKFMYSSVWRDVSQFSDIYQEEHFINYLTPDIRMVKEL 120
QQRVA+CN VV+AR+LNATLV+PKFM+S VW D SQF DIYQ EHFI YL+PDIR+VK+L
Sbjct: 235 QQRVAVCNIVVVARMLNATLVIPKFMFSDVWTDASQFGDIYQVEHFIKYLSPDIRIVKKL 294
Query: 121 PNKLQSLDLEAIGSVVTDVDIPKESKPSFYLKNIIPILLRNGVVHLLGFGNRLAFDPIPF 180
P +LQSLDLEAIGSVVTD+D+ KE+KP FY+K+I+P+LL+N VVH LGFGNRLAFDPIPF
Sbjct: 295 PKELQSLDLEAIGSVVTDIDVMKEAKPGFYMKHILPLLLKNRVVHFLGFGNRLAFDPIPF 354
Query: 181 QLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGP-YADSIMKEKRG 239
+LQRLRCRCNFHAL F PKIQETGA+L+RRLR H P+D YLVGP +A I+ +K G
Sbjct: 355 ELQRLRCRCNFHALNFVPKIQETGAILVRRLRDSGSHLAPVDPYLVGPKFASFILDKKAG 414
Query: 240 QSAKASRYLAIHLRFEIDMVAHSLCXXXXXXXXXXXXXXXXXIHFPALAHLKKTTKLPSP 299
KAS+YLA+HLRFEIDMVAHSLC HFP LA+L KT K+PSP
Sbjct: 415 PLHKASKYLAVHLRFEIDMVAHSLCYFGGGDAEKAELDAYREKHFPTLANLTKTQKMPSP 474
Query: 300 AEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKEN 359
++R+EGLCPL+PEEAVLMLA LGF+RKT VFVAGA IYGG +RL AL SLYP LVTKEN
Sbjct: 475 DDLRTEGLCPLSPEEAVLMLAGLGFSRKTRVFVAGANIYGGNKRLAALTSLYPNLVTKEN 534
Query: 360 LLSATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKMPTIR 419
+LS TELEPFKNFSSQLA LDFI C A++AFAMTDSGSQLSSLVSGYRIYYG GKMPTIR
Sbjct: 535 VLSQTELEPFKNFSSQLAVLDFIACAASDAFAMTDSGSQLSSLVSGYRIYYGAGKMPTIR 594
Query: 420 PNKRRLAAIFVKNSTIEWKVFEQRVRKAVRQTKHIQSRSKGRSVYRYPRCKECMCPTD 477
PNKRR + I +KN+TIEWKVFEQRVRK VRQTKH+ R GRSVYRYPRCKECMC D
Sbjct: 595 PNKRRFSDILLKNNTIEWKVFEQRVRKTVRQTKHVLVRPTGRSVYRYPRCKECMCNED 652
|
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| TAIR|locus:2008935 AT1G11990 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2029984 AT1G29200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2049527 AT2G01480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2079281 AT3G26370 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2130938 AT4G16650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2006852 AT1G14970 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2121793 RHS17 "root hair specific 17" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2014666 AT1G35510 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2168297 AT5G65470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 477 | |||
| cd11299 | 290 | cd11299, O-FucT_plant, GDP-fucose protein O-fucosy | 1e-140 | |
| pfam10250 | 315 | pfam10250, O-FucT, GDP-fucose protein O-fucosyltra | 1e-110 | |
| cd11296 | 206 | cd11296, O-FucT_like, GDP-fucose protein O-fucosyl | 5e-05 | |
| cd11296 | 206 | cd11296, O-FucT_like, GDP-fucose protein O-fucosyl | 2e-04 |
| >gnl|CDD|211385 cd11299, O-FucT_plant, GDP-fucose protein O-fucosyltransferase, plant specific subfamily | Back alignment and domain information |
|---|
Score = 403 bits (1037), Expect = e-140
Identities = 153/365 (41%), Positives = 204/365 (55%), Gaps = 76/365 (20%)
Query: 50 YILVTANGGMNQQRVAICNAVVLARLLNATLVVPKFMYSSVWRDVSQFSDIYQEEHFINY 109
Y+LV+ANGG+NQQR IC+AV +ARLLNATLV+P+ +SVW D S+F DIY +HFI
Sbjct: 1 YLLVSANGGLNQQRSQICDAVAVARLLNATLVLPELDKNSVWGDSSKFGDIYDVDHFIKS 60
Query: 110 LTPDIRMVKELPNKLQSLDLEAIGSVVTDVDIPKESKPSFYLKNIIPILLRNGVVHLLGF 169
L D+R+VK+LP +L S E +T +P S PS+YL+ ++P+L ++GV+ L F
Sbjct: 61 LKDDVRVVKKLPEELASKKPE-----ITVKRVPSRSSPSYYLEEVLPLLKKHGVIRLAPF 115
Query: 170 GNRLAFDPIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPY 229
+RLA D +P ++QRLRCR NFHAL+F P+I+E G L+ RLR+ G
Sbjct: 116 DSRLANDLLPPEIQRLRCRVNFHALRFVPEIEELGDKLVDRLREAGG------------- 162
Query: 230 ADSIMKEKRGQSAKASRYLAIHLRFEIDMVAHSLCEFGGGEEERQELEKYREIHFPALAH 289
+LA+HLRFE DM+A S C
Sbjct: 163 ----------------PFLALHLRFEKDMLAFSGC------------------------- 181
Query: 290 LKKTTKLPSPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNS 349
G CPLTPEE L+L ALGF R T +++A +IYGG RRL L S
Sbjct: 182 ----------------GKCPLTPEEVGLLLRALGFPRSTRIYLAAGEIYGGERRLDPLRS 225
Query: 350 LYPYLVTKENLLSATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIY 409
++P L TKE L +A EL PF SS+LAALD+I C ++ F T G + V+G+R Y
Sbjct: 226 IFPNLYTKETLATAEELAPFSGHSSRLAALDYIVCLESDVFVPTYGG-NFAKAVAGHRRY 284
Query: 410 YGGGK 414
G K
Sbjct: 285 LGHRK 289
|
Some members of this plant-specific family of O-fucosyltransferases have been annotated as auxin-independent growth promotors. The function of the protein seems unclear. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes. Length = 290 |
| >gnl|CDD|220652 pfam10250, O-FucT, GDP-fucose protein O-fucosyltransferase | Back alignment and domain information |
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| >gnl|CDD|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and related proteins | Back alignment and domain information |
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| >gnl|CDD|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and related proteins | Back alignment and domain information |
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Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 477 | |||
| PF10250 | 351 | O-FucT: GDP-fucose protein O-fucosyltransferase; I | 100.0 | |
| KOG3849 | 386 | consensus GDP-fucose protein O-fucosyltransferase | 97.87 | |
| PF05830 | 321 | NodZ: Nodulation protein Z (NodZ); InterPro: IPR00 | 95.46 |
| >PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-57 Score=453.30 Aligned_cols=308 Identities=39% Similarity=0.603 Sum_probs=210.5
Q ss_pred eCCchhHHHHHHHHHHHHHHHhcCeEeecccccCCcccCCCC-----CCcccchHHHHHhccCCceecccCchhhhhhhh
Q 011800 55 ANGGMNQQRVAICNAVVLARLLNATLVVPKFMYSSVWRDVSQ-----FSDIYQEEHFINYLTPDIRMVKELPNKLQSLDL 129 (477)
Q Consensus 55 ~nGGLnq~R~~IcdaVaVAriLNATLVlP~l~~~s~W~D~S~-----F~dIfD~dhFI~~L~~dV~IVk~LP~~~~~~~~ 129 (477)
+.||+||||+++++||++|++||+|||||.+...+.|+|.++ |+++||+++|+++++++|.+.+.+|..+.....
T Consensus 6 ~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~ 85 (351)
T PF10250_consen 6 CMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFR 85 (351)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccc
Confidence 889999999999999999999999999999999999999987 999999999999999999999999877654321
Q ss_pred hhh------------------------cccccccCCCC-CCChhHHHhhhhHhHhhc------ceEEEecccCCCcCCCC
Q 011800 130 EAI------------------------GSVVTDVDIPK-ESKPSFYLKNIIPILLRN------GVVHLLGFGNRLAFDPI 178 (477)
Q Consensus 130 ~~~------------------------~~~~~~~~~~~-~s~~~~Y~~~vlP~l~k~------~Vi~l~~~~~rLa~~~l 178 (477)
... ........... ++.+.+|+++++|.+.++ +|+.|.++..++..+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 165 (351)
T PF10250_consen 86 LQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYL 165 (351)
T ss_dssp EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GG
T ss_pred hhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhccc
Confidence 100 00001112222 678889998899999987 99999999999998888
Q ss_pred ChhhhhhcccccccccccchhHHHHHHHHHHHHhcccCCCCCCCcccCCCccchhhhhhhcccccCCceEEEeeehhhhh
Q 011800 179 PFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRGQSAKASRYLAIHLRFEIDM 258 (477)
Q Consensus 179 p~~iQrLRCrvnf~ALrF~~~I~~lg~~lV~Rlr~~~~~~~~~~~~~~g~f~~~~~~~~~~~~~~~~~yiAlHLR~E~Dm 258 (477)
+.++|| +|+|+++|+++|+++|++|+.. +++|||+|||+|+||
T Consensus 166 ~~~~~r--------~l~~~~~i~~~a~~~i~~~~~~-----------------------------~~~yiavHlR~~~D~ 208 (351)
T PF10250_consen 166 DRDLQR--------YLRFSPEIRELADKFIKRLLAG-----------------------------GGPYIAVHLRRGKDW 208 (351)
T ss_dssp GGGGGG--------G--B-HHHHHHHHHHHHHH---------------------------------SSEEEEEE--SHHH
T ss_pred CccceE--------EEecCHHHHHHHHHHHHHhhcc-----------------------------cCceEEEeecccCch
Confidence 999988 9999999999999999999932 258999999999999
Q ss_pred hhhccccCCCChhHHHHHHHHHHhhhhhhhhhhcCCCCCChHhhhcCCCCcCCHHHHHHHHHHcCCCCCcEEEEEecccc
Q 011800 259 VAHSLCEFGGGEEERQELEKYREIHFPALAHLKKTTKLPSPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIY 338 (477)
Q Consensus 259 lA~sgC~~gg~~~e~~eL~~~R~~~~~~~~~~~~~~k~i~~~~~R~~G~CPLtPeEvgl~L~alGf~~~T~IYlA~geiy 338 (477)
+++|.+++ ++..|+.+|.. ..+.+.+...+..|.||++|++++.+++++|+.+.|.||||++++|
T Consensus 209 --~~~C~~~~---~~~~~~~~~~~----------~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~ 273 (351)
T PF10250_consen 209 --FSACEFKG---ERHLLASPRCW----------GKKSINPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIY 273 (351)
T ss_dssp --HHHHCT-T-------TTTHHHH-----------GGGTT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS--
T ss_pred --HhhcccCC---chHHHHHhHhh----------ccccccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCccc
Confidence 88999955 78888888863 1234567788899999999999999999999999999999999999
Q ss_pred CccccchHHHhhCCCccccccCCCcccccccccccccchhhheeeeccCceeeecCCCCchhhhhhhhhhhccCCCCce
Q 011800 339 GGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKMPT 417 (477)
Q Consensus 339 Gg~~~m~~L~~~FPnl~tKetL~s~eEL~pf~~~ss~lAALDyiV~l~SDvFv~t~~G~nfa~~V~GhR~y~g~g~~kT 417 (477)
||.+.|.+|++.||++++|+++.+.+|+++|.+ .++|+||++||++||+||+|. ||+|+.+|+++|.|.|.+++||
T Consensus 274 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~vD~~i~~~s~~Figt~-~Stfs~~i~~~R~~~g~~~~~~ 349 (351)
T PF10250_consen 274 GGERRLDPLKNMFPNVVTKDDLLSHEELEPLND--DQLAMVDQEICSRSDVFIGTC-GSTFSSNIARERHYRGKPKRKS 349 (351)
T ss_dssp ---------HHHHHHHHGGGT--EE--S-------S--HHHHHHHHHHSSEEEE-T-T-HHHHHHHHHHHHSSSS---E
T ss_pred ccchhHHHHHHHhhhhEeccccCCHHHhhhccc--cchhHHHHHHHhcCCEEEecC-cchhHHHhhcccCcCCCCCCCC
Confidence 999999999999999999999999999999966 999999999999999999998 6689999999999999766555
|
Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A. |
| >KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 477 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-07 | |
| 3zy2_A | 362 | Putative GDP-fucose protein O-fucosyltransferase; | 2e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 4e-07
Identities = 70/448 (15%), Positives = 126/448 (28%), Gaps = 139/448 (31%)
Query: 68 NAVVLARLLNATL------VVPKFM-------YSSVW-------RDVSQFSDIYQEEH-- 105
+AV L TL +V KF+ Y + R S + +Y E+
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 106 -------FINYLTPDIRMVKELPNKLQSLDLEA---------IG-SVVT-DVDIPKESKP 147
F Y ++ +L L L G + V DV
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV-------- 170
Query: 148 SFYLKNIIPILLRNGVVHLLGFGNRLAFDPIPFQLQRL--RCRCNFHALQFA----PKIQ 201
+ + + L N + + + LQ+L + N+ +
Sbjct: 171 ---CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 202 ETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRGQSAKA----------SRYLAIH 251
+ LRRL K + + L LV ++ + ++ A +R+ +
Sbjct: 228 HSIQAELRRLLKSKPYENCL---LV---LLNV---QNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 252 LRFEIDMVAH-SLCEFGGGEEERQELE---KYREIHFPALAHLKKTTKLPSP------AE 301
H SL + KY + L TT +P AE
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT---NPRRLSIIAE 335
Query: 302 IRSEGLC----------------------PLTPEEAVLMLAALGFNRKTHVFVAGAQIYG 339
+GL L P E M L VF A I
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS------VFPPSAHIPT 389
Query: 340 GTRRLGALNSLYPYLVTKENLLSATELEPF-------KNFSSQLAALDF-IGCTAANAFA 391
L+ ++ ++ + ++ +L + K + + ++ + N +A
Sbjct: 390 IL-----LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 392 MTDSGSQLSSLVSGYRI---YYGGGKMP 416
+ S+V Y I + +P
Sbjct: 445 LHR------SIVDHYNIPKTFDSDDLIP 466
|
| >3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* Length = 362 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 477 | |||
| 4ap5_A | 408 | GDP-fucose protein O-fucosyltransferase 2; GT-B, G | 99.53 | |
| 3zy2_A | 362 | Putative GDP-fucose protein O-fucosyltransferase; | 99.17 | |
| 2hhc_A | 330 | NODZ, nodulation fucosyltransferase NODZ; glycosyl | 96.86 | |
| 2de0_X | 526 | Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran | 96.44 |
| >4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=4.1e-14 Score=146.02 Aligned_cols=300 Identities=21% Similarity=0.206 Sum_probs=163.7
Q ss_pred CCCCCcEEEEEeC-C-chhHHHHHHHHHHHHHHHhcCe----EeecccccCCcccCC------CCCCcccchHHHHHhcc
Q 011800 44 SGGNNGYILVTAN-G-GMNQQRVAICNAVVLARLLNAT----LVVPKFMYSSVWRDV------SQFSDIYQEEHFINYLT 111 (477)
Q Consensus 44 ~~~snGyl~V~~n-G-GLnq~R~~IcdaVaVAriLNAT----LVlP~l~~~s~W~D~------S~F~dIfD~dhFI~~L~ 111 (477)
....++||+-..| | |.|.||...-.|.++|+.||.| ||||-...---|+-. -.|+++||++++ +
T Consensus 18 ~~~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L----~ 93 (408)
T 4ap5_A 18 AASRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL----N 93 (408)
T ss_dssp --CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH----H
T ss_pred CccccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH----H
Confidence 4567999998764 5 8999999999999999999999 999976533335443 279999999875 3
Q ss_pred CCceecccCchhhhhhh-hhhh-------------ccc----------c------cccCCCCCCChhHHH----------
Q 011800 112 PDIRMVKELPNKLQSLD-LEAI-------------GSV----------V------TDVDIPKESKPSFYL---------- 151 (477)
Q Consensus 112 ~dV~IVk~LP~~~~~~~-~~~~-------------~~~----------~------~~~~~~~~s~~~~Y~---------- 151 (477)
..|+|+.. +++.... +..+ ... + .........++.|=.
T Consensus 94 ~~vpVI~m--eeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c 171 (408)
T 4ap5_A 94 KNIPVIEY--EQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSC 171 (408)
T ss_dssp TTSCEEEH--HHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEE
T ss_pred hhCCeeEH--HHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCcee
Confidence 45566532 2221100 0000 000 0 000000000111210
Q ss_pred -------hhhhHhHhhc---ceEEEecccCCCcCCCCChhhhhhcccccccccccchhHHHHHHHHHHHHhcccCCCCCC
Q 011800 152 -------KNIIPILLRN---GVVHLLGFGNRLAFDPIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPL 221 (477)
Q Consensus 152 -------~~vlP~l~k~---~Vi~l~~~~~rLa~~~lp~~iQrLRCrvnf~ALrF~~~I~~lg~~lV~Rlr~~~~~~~~~ 221 (477)
..+-|.+.+. .-+-+..+...|+.-.-..+...+| ..|+|.+.|.+.|++.++..-.......++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~-----r~l~~s~~l~~~a~~fi~~~L~~~~~~~h~ 246 (408)
T 4ap5_A 172 LSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTR-----RSMVFARHLREVGDEFRSRHLNSTDDADRI 246 (408)
T ss_dssp EEECSBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHH-----HTCCBCHHHHHHHHHHHHHHHCCCTTTTTC
T ss_pred EEEeecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHH-----HHhhhhHHHHHHHHHHHHHHhCcccceeec
Confidence 1122333322 1122222333333111122222222 379999999999999888654321000000
Q ss_pred CcccCCCccchhhhhhhcccccCCceEEEeeehhhhhhhhccccCCCChhHHHHHHHHHHhhhhhhhhhhcCCCCCChHh
Q 011800 222 DHYLVGPYADSIMKEKRGQSAKASRYLAIHLRFEIDMVAHSLCEFGGGEEERQELEKYREIHFPALAHLKKTTKLPSPAE 301 (477)
Q Consensus 222 ~~~~~g~f~~~~~~~~~~~~~~~~~yiAlHLR~E~DmlA~sgC~~gg~~~e~~eL~~~R~~~~~~~~~~~~~~k~i~~~~ 301 (477)
- .|. .-...........+++|+++|+|-+.=+.++..|.
T Consensus 247 r---~~~--dw~~~~~~~~~~~~~~y~~~H~Rr~d~~~~~~~~~------------------------------------ 285 (408)
T 4ap5_A 247 P---FQE--DWMKMKVKLGSALGGPYLGVHLRRKDFIWGHRQDV------------------------------------ 285 (408)
T ss_dssp C---CCS--SGGGCCCCTTCBCCEEEEEEEECCTTTTTTTCSSS------------------------------------
T ss_pred c---cch--hHhhhhcccccccCCCccccccccccchhhhhccC------------------------------------
Confidence 0 000 00000001112235789999999863222222222
Q ss_pred hhcCCCCcCCH---HHHHHHHHHcCCCCCcEEEEEeccccCccccchHHHhhCCCccccccCCCcccccccccccccchh
Q 011800 302 IRSEGLCPLTP---EEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAA 378 (477)
Q Consensus 302 ~R~~G~CPLtP---eEvgl~L~alGf~~~T~IYlA~geiyGg~~~m~~L~~~FPnl~tKetL~s~eEL~pf~~~ss~lAA 378 (477)
|-.+ +.+.-+++..+ -+.||||+-+. +..+..|++.+|.++.-.. ..+++..+ ...++|.
T Consensus 286 -------ps~~~~~~~i~~~~~~~~---~~~VyiATD~~---~~~~~~l~~~~~~~~~~~~--~~~~~~~~--~d~~~a~ 348 (408)
T 4ap5_A 286 -------PSLEGAVRKIRSLMKTHR---LDKVFVATDAV---RKEYEELKKLLPEMVRFEP--TWEELELY--KDGGVAI 348 (408)
T ss_dssp -------CCHHHHHHHHHHHHHHHT---CSCEEEEECCC---HHHHHHHHHHCTTEECCCC--CHHHHHHH--HHHHHHH
T ss_pred -------CCHHHHHHHHHHHHHhcC---CCEEEEeCCCc---hhHHHHHHHhCCCcEEecC--cchhhhcc--CcchhhH
Confidence 2111 22333334443 34599998643 3446789999998764322 22444444 3446799
Q ss_pred hheeeeccCceeeecCCCCchhhhhhhhhhhccCC
Q 011800 379 LDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGG 413 (477)
Q Consensus 379 LDyiV~l~SDvFv~t~~G~nfa~~V~GhR~y~g~g 413 (477)
||-+||.+||+||+|..+ +|+..|.-.|-+.|..
T Consensus 349 idq~Ic~~a~~FiGt~~S-tfS~~I~~eR~~~G~~ 382 (408)
T 4ap5_A 349 IDQWICAHARFFIGTSVS-TFSFRIHEEREILGLD 382 (408)
T ss_dssp HHHHHHHTEEEEEBCTTC-HHHHHHHHHHHHHTBC
T ss_pred HHHHHHHhCCeeEeCCcC-chhHHHHHHHHhcCCC
Confidence 999999999999999855 8999999999999843
|
| >3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* | Back alignment and structure |
|---|
| >2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A* | Back alignment and structure |
|---|
| >2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00