Citrus Sinensis ID: 011813
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 477 | 2.2.26 [Sep-21-2011] | |||||||
| Q7XA06 | 540 | Synaptotagmin-3 OS=Arabid | yes | no | 0.937 | 0.827 | 0.633 | 1e-169 | |
| B6ETT4 | 537 | Synaptotagmin-2 OS=Arabid | no | no | 0.947 | 0.841 | 0.526 | 1e-144 | |
| Q9SKR2 | 541 | Synaptotagmin-1 OS=Arabid | no | no | 0.945 | 0.833 | 0.523 | 1e-142 | |
| Q8L706 | 560 | Synaptotagmin-5 OS=Arabid | no | no | 0.951 | 0.810 | 0.319 | 1e-61 | |
| A0JJX5 | 569 | Synaptotagmin-4 OS=Arabid | no | no | 0.945 | 0.792 | 0.319 | 1e-56 | |
| Q5M7N9 | 889 | Extended synaptotagmin-3 | yes | no | 0.568 | 0.304 | 0.274 | 2e-29 | |
| Q5DTI8 | 891 | Extended synaptotagmin-3 | yes | no | 0.561 | 0.300 | 0.271 | 9e-27 | |
| Q7ZWU7 | 876 | Extended synaptotagmin-2- | N/A | no | 0.595 | 0.324 | 0.269 | 7e-26 | |
| Q5FWL4 | 872 | Extended synaptotagmin-2- | N/A | no | 0.595 | 0.325 | 0.269 | 1e-25 | |
| Q3TZZ7 | 845 | Extended synaptotagmin-2 | no | no | 0.679 | 0.383 | 0.25 | 2e-25 |
| >sp|Q7XA06|SYT3_ARATH Synaptotagmin-3 OS=Arabidopsis thaliana GN=SYT3 PE=2 SV=1 | Back alignment and function desciption |
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Score = 594 bits (1531), Expect = e-169, Method: Compositional matrix adjust.
Identities = 292/461 (63%), Positives = 377/461 (81%), Gaps = 14/461 (3%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGF +SVLG++GF IG+P+GL++GFF+ IYS+P+ E P PL E L DLLP
Sbjct: 1 MGFFTSVLGIIGF-VIGIPIGLILGFFVLIYSQPSHQ--EYPPARPLVETSISVLLDLLP 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
+IPLW+KNPDYERVDW N+F+S MWPYLDKA+C +R++ QP+F +Y G F IESIEFEN
Sbjct: 58 DIPLWMKNPDYERVDWFNKFISYMWPYLDKAVCGIIRSSVQPLFADYIGTFCIESIEFEN 117
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
L+LGTLPPT++G++ YETNE +L+ EP+++WAGNPNIVLVLK+LS RI VQLVDLQ FA
Sbjct: 118 LSLGTLPPTVHGVKFYETNEKELLFEPSIKWAGNPNIVLVLKVLSLRIRVQLVDLQFFAI 177
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
R+ LKPL+PTFPCF +VVSLME+PHVDFG+K+LGGD+MSIPGLY+++Q+ I + V+ +
Sbjct: 178 VRVALKPLLPTFPCFGMVVVSLMEKPHVDFGLKVLGGDLMSIPGLYRYVQETIKRQVSSM 237
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y WPQ EIPILD+S+ ++KKPVG+LHV ++RA LLKKD LGTSDPYVKLSLTGEKLP
Sbjct: 238 YHWPQVLEIPILDSSTASVKKPVGLLHVSILRARNLLKKDLLGTSDPYVKLSLTGEKLPA 297
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKTT+KK+NLNPEWNE+FKL+VK+P SQ+LQL+VFDWDKVGGHDRLGMQ++PL+ + P E
Sbjct: 298 KKTTIKKRNLNPEWNEHFKLIVKDPNSQVLQLEVFDWDKVGGHDRLGMQMIPLQKINPGE 357
Query: 361 TKEFTLDLLKHTN-ISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQS 419
KEF LDL+K++N + D D K+RG++ V+L YVPF+E+SIK RK S ++S
Sbjct: 358 RKEFNLDLIKNSNVVMDSGDKKKRGRLEVDLRYVPFREESIK--------RRKESREEKS 409
Query: 420 S-DEEALSGAGLLSVLVQGAEDVEG-ENHNNPYAIILYKGD 458
S D++ LS AGLLSV VQ A+DVEG + H+NPYA++L++G+
Sbjct: 410 SEDDDFLSQAGLLSVAVQSAKDVEGKKKHSNPYAVVLFRGE 450
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May be involved in membrane trafficking. Arabidopsis thaliana (taxid: 3702) |
| >sp|B6ETT4|SYT2_ARATH Synaptotagmin-2 OS=Arabidopsis thaliana GN=SYT2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 512 bits (1319), Expect = e-144, Method: Compositional matrix adjust.
Identities = 244/463 (52%), Positives = 340/463 (73%), Gaps = 11/463 (2%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MG +S++LGV+GFGF G +G+++G++LFIY + D VE+P + PL ELD+ + + P
Sbjct: 1 MGIISTILGVIGFGF-GTTIGIVIGYYLFIYFQSTD--VEDPEIKPLVELDSETIATMFP 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
EIP+WVKNPD++R+DWLN+ + MWPY+DKAIC ++ A+PI E +KI+S+EFE
Sbjct: 58 EIPMWVKNPDFDRIDWLNKLIGHMWPYMDKAICKMAKSIAKPIIAEQIPNYKIDSVEFEM 117
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
LTLG+LPP+ G++VY T++ +++ME +++WAGNPNI++V K + TVQ++DLQ++A
Sbjct: 118 LTLGSLPPSFQGMKVYATDDKEIIMELSVKWAGNPNIIVVAKAFGLKATVQVIDLQVYAT 177
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
PRITLKPLVP+FPCFA + VSLM++P VDFG+K+LG D+M+IPGLY+F+Q+ I VA +
Sbjct: 178 PRITLKPLVPSFPCFANIFVSLMDKPQVDFGLKLLGADVMAIPGLYRFVQEIIKDQVANM 237
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y+WP+T + I+D S A+KKPVG+L VKV++A KL KKD LG SDPYVKL+L+G+K+P
Sbjct: 238 YLWPKTLNVQIMDPSK-AMKKPVGLLSVKVIKAIKLKKKDLLGGSDPYVKLTLSGDKVPG 296
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKT VK NLNPEWNE F LVVKEPESQ LQL V+DW++VG HD++GM ++ LK LTP E
Sbjct: 297 KKTVVKHSNLNPEWNEEFDLVVKEPESQELQLIVYDWEQVGKHDKIGMNVIQLKDLTPEE 356
Query: 361 TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSS 420
K TL+LLK +P K RG++VVE+ Y PFK+D I + K
Sbjct: 357 PKLMTLELLKSMEPKEPVSEKSRGQLVVEVEYKPFKDDDIPENIDDPNAVEKAP------ 410
Query: 421 DEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTK 463
E S GLL V+V AED+EG+ H NP +L++G++++TK
Sbjct: 411 -EGTPSTGGLLVVIVHEAEDLEGKYHTNPSVRLLFRGEERKTK 452
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May play an important role in regulating an unconventional protein trafficking from the cytosol to the extracelluar matrix. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SKR2|SYT1_ARATH Synaptotagmin-1 OS=Arabidopsis thaliana GN=SYT1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 505 bits (1300), Expect = e-142, Method: Compositional matrix adjust.
Identities = 244/466 (52%), Positives = 339/466 (72%), Gaps = 15/466 (3%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGF S++LG GFG +G+ LGL++G+ LF+Y PND V++P + + + D + +LP
Sbjct: 1 MGFFSTILGFCGFG-VGISLGLVIGYVLFVYLLPND--VKDPEIRSIADQDPKAMLRMLP 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
EIPLWVKNPD++RVDW+NRFL MWPYLDKAIC + A+PI +E K+KI+S+EFE
Sbjct: 58 EIPLWVKNPDFDRVDWINRFLEYMWPYLDKAICKTAKNIAKPIIEEQIPKYKIDSVEFET 117
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
LTLG+LPPT G++VY T+E +L+MEP L+WA NPNI++ +K + TVQ+VDLQ+FA
Sbjct: 118 LTLGSLPPTFQGMKVYLTDEKELIMEPCLKWAANPNILVAIKAFGLKATVQVVDLQVFAQ 177
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
PRITLKPLVP+FPCFA + VSLME+PHVDFG+K+ G D+MSIPGLY+F+Q+ I VA +
Sbjct: 178 PRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLGGADLMSIPGLYRFVQEQIKDQVANM 237
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y+WP+T +PILD + A ++PVGI+HVKVVRA L KKD +G +DP+VK+ L+ +K+P
Sbjct: 238 YLWPKTLVVPILDPAK-AFRRPVGIVHVKVVRAVGLRKKDLMGGADPFVKIKLSEDKIPS 296
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKTTVK KNLNPEWNE FK V++P++Q+L+ V+DW++VG +++GM ++ LK + P E
Sbjct: 297 KKTTVKHKNLNPEWNEEFKFSVRDPQTQVLEFSVYDWEQVGNPEKMGMNVLALKEMVPDE 356
Query: 361 TKEFTLDLLKHTNISD---PKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGND 417
K FTL+L K + + P D K RGK+ VEL Y PF E+ + K + +
Sbjct: 357 HKAFTLELRKTLDGGEDGQPPD-KYRGKLEVELLYKPFTEEEM-----PKGFEETQAV-- 408
Query: 418 QSSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTK 463
Q + E + G+L V+V AEDVEG++H NPY I +KG++++TK
Sbjct: 409 QKAPEGTPAAGGMLVVIVHSAEDVEGKHHTNPYVRIYFKGEERKTK 454
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Plays an important role in maintaining plasma membrane integrity during freezing and osmotic stresses. May function in membrane resealing during calcium-dependent freezing tolerance. May regulate endocytosis and endosome recycling at the plasma membrane and cell-to-cell trafficking of cabbage leaf curl virus (CaLCuV) and tobacco mosaic virus (TMV) movement proteins via plasmodesmata. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L706|SYT5_ARATH Synaptotagmin-5 OS=Arabidopsis thaliana GN=SYT5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 237 bits (605), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 155/485 (31%), Positives = 264/485 (54%), Gaps = 31/485 (6%)
Query: 11 LGFGFIGLPLGLLVGFFL---FIYSKPNDDQVEEPLVTPLCELDTIPLFD----LLPEI- 62
+GF +G+ +GLLVG + F+ + + ++ L + + + D L PE
Sbjct: 1 MGF-IVGVVIGLLVGIAIIIGFVKLENSRSKLRSELANTVAAFARMTVEDSRKLLPPEFY 59
Query: 63 PLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFENLT 122
P WV + +++ WLN L+ +WPY+D+A ++ + +P+ ++Y + S+ F LT
Sbjct: 60 PSWVVFSERQKLTWLNHHLTKIWPYVDEAASELIKASVEPVLEQYRPAI-VASLTFSKLT 118
Query: 123 LGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLK-LLSFRITVQLVDLQIFAAP 181
LGT+ P G+ V + ++N + +E ++W GNPNIVL +K L+ + +Q+ ++
Sbjct: 119 LGTVAPQFTGVSVIDGDKNGITLELDMQWDGNPNIVLGVKTLVGVSLPIQVKNIGFTGVF 178
Query: 182 RITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGIY 241
R+ +PLV FPCF + VSL E+ +DF +K++GGDI +IPGL + I++ I V
Sbjct: 179 RLIFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGDISAIPGLSEAIEETIRDAVEDSI 238
Query: 242 IWPQTYEIPIL--DASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLP 299
WP IPI+ D S + +K PVG+L VK+V+A L KD +G SDP+ K+ + +
Sbjct: 239 TWPVRKVIPIIPGDYSDLELK-PVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFIRPLREK 297
Query: 300 WKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH 359
K++ +LNP WNE+F+ VV++ +Q L ++++D + V + +G + L L P
Sbjct: 298 TKRSKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEGVQASELIGCAQIRLCELEPG 357
Query: 360 ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDS---IKFSSVSKKYSRKGSGN 416
+ K+ L L+K I +D K RG++ +EL Y+P+ + F + S + N
Sbjct: 358 KVKDVWLKLVKDLEIQ--RDTKNRGEVHLELLYIPYGSGNGIVNPFVTSSMTSLERVLKN 415
Query: 417 DQSSDEEALSGA-------GLLSVLVQGAEDVEGEN---HNNPYAIILYK--GDKKRTKV 464
D + +E A S G+LSV V AE++ ++ +PY ++ K G K +T+V
Sbjct: 416 DTTDEENASSRKRKDVIVRGVLSVTVISAEEIPIQDLMGKADPYVVLSMKKSGAKSKTRV 475
Query: 465 SFLSL 469
SL
Sbjct: 476 VNDSL 480
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May be involved in membrane trafficking. Arabidopsis thaliana (taxid: 3702) |
| >sp|A0JJX5|SYT4_ARATH Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (562), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 157/492 (31%), Positives = 248/492 (50%), Gaps = 41/492 (8%)
Query: 1 MGFLSSVLGVLGFG-FIGLPL--GLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFD 57
MGFL FG FIG+ + GL+V F + + + +
Sbjct: 1 MGFL--------FGLFIGIAVSFGLVVAFARYSSVRSTRRADLAKTIAAFARMTVQDSRK 52
Query: 58 LLPE--IPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIES 115
LLP P WV ++++WLN L +WPY+++A ++++ +P+ ++Y+ + S
Sbjct: 53 LLPGDFYPSWVVFSQRQKLNWLNLELEKIWPYVNEAASELIKSSVEPVLEQYTPAM-LAS 111
Query: 116 IEFENLTLGTLPPTIYGIRVYETNE--NQLVMEPALRWAGNPNIVLVLK-LLSFRITVQL 172
++F TLGT+ P G+ + E+ N + ME ++W GNP IVL +K LL + +++
Sbjct: 112 LKFSKFTLGTVAPQFTGVSILESESGPNGITMELEMQWDGNPKIVLDVKTLLGVSLPIEV 171
Query: 173 VDLQIFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKC 232
++ R+ KPLV FPCF + SL E+ +DF +K++GG++ SIPG+ I++
Sbjct: 172 KNIGFTGVFRLIFKPLVDEFPCFGALSYSLREKKGLDFTLKVIGGELTSIPGISDAIEET 231
Query: 233 ITKYVAGIYIWPQTYEIPIL--DASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVK 290
I + WP IPIL D S + + KPVG L VKVV+A L KD +G SDPY
Sbjct: 232 IRDAIEDSITWPVRKIIPILPGDYSDLEL-KPVGKLDVKVVQAKDLANKDMIGKSDPYAI 290
Query: 291 LSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQL 350
+ + KKT +LNP WNE+F+ +V++ +Q L ++VFD + VG +G
Sbjct: 291 VFIRPLPDRTKKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEGVGSSQLIGAAQ 350
Query: 351 VPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF-KEDSIK-------- 401
VPL L P + K+ L L+K I +D K RG++ +EL Y P KE +K
Sbjct: 351 VPLNELVPGKVKDIWLKLVKDLEIQ--RDTKNRGQVQLELLYCPLGKEGGLKNPFNPDYS 408
Query: 402 ---FSSVSKKYSRKGSGNDQ----SSDEEALSGAGLLSVLVQGAED---VEGENHNNPYA 451
V K S D +S ++ + G+LSV V AED V+ + +
Sbjct: 409 LTILEKVLKPESEDSDATDMKKLVTSKKKDVIVRGVLSVTVVAAEDLPAVDFMGKADAFV 468
Query: 452 IILYKGDKKRTK 463
+I K + ++K
Sbjct: 469 VITLKKSETKSK 480
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May be involved in membrane trafficking. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5M7N9|ESYT3_XENTR Extended synaptotagmin-3 OS=Xenopus tropicalis GN=esyt3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 143/291 (49%), Gaps = 20/291 (6%)
Query: 59 LPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEF 118
L ++P WV PD ERV+WLN+ + MWPY+ + + +P+ S K + F
Sbjct: 144 LQQLPAWVNFPDVERVEWLNKVVGQMWPYIGMYVEKMFQDKVEPLVRSSSAHLK--AFTF 201
Query: 119 ENLTLGTLPPTIYGIRVYETN--ENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQ 176
+ LG P I G++ Y N + +++++ L + G+ I + +K + + +Q
Sbjct: 202 TKVHLGEKFPRINGVKSYTKNVDKREVILDLQLSYNGDVEINVEVKKM---CKAGVKGVQ 258
Query: 177 IFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKY 236
+ R+ L PL+P P + + ++RPH+D L +++ IPG+ F I
Sbjct: 259 LHGTLRVILAPLLPDLPFVGAVTMFFIQRPHLDINWTGL-TNVLEIPGVSDFSDSMIVDM 317
Query: 237 VAGIYIWPQTYEIPI---LDASSVAIKKPVGILHVKVVRASKLLKKD------FLGTSDP 287
+A + P + +P+ + A+ + P G+L + ++ A L+ KD G SDP
Sbjct: 318 IASHLVLPNRFTVPLSSQVQAAQLRFPLPHGVLRLHLIEAEDLIPKDNYLKGIIRGKSDP 377
Query: 288 YVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWD 338
Y L + + K+ K+NLNP+W E ++ VV E Q L++ ++D D
Sbjct: 378 YAVLRIGNQNF---KSRTIKENLNPKWGEMYEFVVHEVPGQDLEVDLYDED 425
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May play a role as calcium-regulated intrinsic membrane protein. Xenopus tropicalis (taxid: 8364) |
| >sp|Q5DTI8|ESYT3_MOUSE Extended synaptotagmin-3 OS=Mus musculus GN=Esyt3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 122 bits (305), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 145/287 (50%), Gaps = 19/287 (6%)
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
+P W+ PD ERV+W N+ + +WPYL + +R +P E S + + F
Sbjct: 109 HLPAWIHFPDVERVEWANKIIIQIWPYLSMIMENKIREKLEPKIREKS--IHLRTFTFTK 166
Query: 121 LTLGTLPPTIYGIRVY--ETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIF 178
L G P + G++V+ + N ++ ++ + + G+ I + L+ +I + +Q+
Sbjct: 167 LYFGQKCPKVNGVKVHTDKRNRRKVTLDLQICYIGDCEISVELQ----KIRGGVSGVQLQ 222
Query: 179 AAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVA 238
R+ L+PL+ P + V +++PH+ L +++ +PG+ + + +A
Sbjct: 223 GTLRVILEPLLVDKPFIGAVTVFFLQKPHLQINWTGL-TNLLDMPGINELSDSLLEDLIA 281
Query: 239 GIYIWPQTYEIPI---LDASSVAIKKPVGILHVKVVRASKLLKKD-FL---GTSDPYVKL 291
+ P +P+ LD +++ + P G++ V ++ A KL +KD FL G SDPY K+
Sbjct: 282 AHLVLPNRVTVPVKKGLDVTNLRVPLPCGVIRVHLLEAKKLAQKDNFLGLGGKSDPYAKV 341
Query: 292 SLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWD 338
S+ L ++ KNLNP WNE F+ +V E Q L++ ++D D
Sbjct: 342 SIG---LQHCRSRTIYKNLNPTWNEVFEFMVYEVPGQDLEVDLYDED 385
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May play a role as calcium-regulated intrinsic membrane protein. Mus musculus (taxid: 10090) |
| >sp|Q7ZWU7|EST2B_XENLA Extended synaptotagmin-2-B OS=Xenopus laevis GN=esyt2-b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 119 bits (297), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 147/304 (48%), Gaps = 20/304 (6%)
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
++P WV PD ER +WLN+ + MWPY+ + I R T +P + + F
Sbjct: 114 DLPAWVHFPDIERAEWLNKTVKHMWPYICQFIEKLFRETIEPAV--RGANAHLSTFSFTK 171
Query: 121 LTLGTLPPTIYGIRVYETN--ENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIF 178
+ +G+ P I G++VY N + Q++++ + + G I L +K R V+ +Q+
Sbjct: 172 IDMGSQPLRINGVKVYTENVDKRQIILDLQISFVGETEIDLEVKRYFCRAGVK--SIQLH 229
Query: 179 AAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVA 238
R+ L+PL+ P + + + +P ++ L +++ +PGL I ++
Sbjct: 230 GTMRVILEPLIGDVPIVGALSIFFLRKPLLEINWTGL-TNMLDMPGLNGLSDTIILDIIS 288
Query: 239 GIYIWPQTYEIPILDASSVAIKK---PVGILHVKVVRASKLLKKDFL------GTSDPYV 289
+ P +P++ +A + P G+L + + A L+ KD G SDPY
Sbjct: 289 NYLVLPNRITVPLVSDVQIAQLRFPIPKGVLRIHFLEAQDLMWKDTYMKGLVKGKSDPYG 348
Query: 290 KLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQ 349
+ L + ++ V K+NLNP+WNE ++ +V E Q L++++FD D D LG
Sbjct: 349 VVRLGNQVF---QSKVIKENLNPKWNEVYEALVHEHPGQELEIELFDED-TDKDDFLGSL 404
Query: 350 LVPL 353
L+ L
Sbjct: 405 LIDL 408
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May play a role as calcium-regulated intrinsic membrane protein. Xenopus laevis (taxid: 8355) |
| >sp|Q5FWL4|EST2A_XENLA Extended synaptotagmin-2-A OS=Xenopus laevis GN=esyt2-a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 147/304 (48%), Gaps = 20/304 (6%)
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
++P WV PD ER +WLN+ + MWPY+ + I R T +P + + F
Sbjct: 110 DLPAWVHFPDIERAEWLNKTVKHMWPYICQFIEKLFRETIEPAV--RGANAHLSTFNFTK 167
Query: 121 LTLGTLPPTIYGIRVYETN--ENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIF 178
+ +G+ P I G++VY N + Q++++ + + G I L +K R V+ +Q+
Sbjct: 168 IDMGSQPLRINGVKVYTENVDKRQIILDLQISFVGETEIDLEVKRYFCRAGVK--SIQLH 225
Query: 179 AAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVA 238
R+ L+PL+ P + + + +P ++ L +++ +PGL I ++
Sbjct: 226 GTMRVILEPLIGDVPIVGALSIFFLRKPLLEINWTGL-TNMLDMPGLNGLSDTIILDIIS 284
Query: 239 GIYIWPQTYEIPILDASSVAIKK---PVGILHVKVVRASKLLKKDFL------GTSDPYV 289
+ P +P++ +A + P G+L + + A L+ KD G SDPY
Sbjct: 285 NYLVLPNRITVPLVSDVQIAQLRFPIPKGVLRIHFLEAQDLMWKDTYMKGLVKGKSDPYG 344
Query: 290 KLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQ 349
+ L + ++ V K+NLNP+WNE ++ +V E Q L++++FD D D LG
Sbjct: 345 VVRLGNQVF---QSKVIKENLNPKWNEVYEALVHEHPGQELEIELFDED-TDKDDFLGSL 400
Query: 350 LVPL 353
L+ L
Sbjct: 401 LIDL 404
|
May play a role as calcium-regulated intrinsic membrane protein. Xenopus laevis (taxid: 8355) |
| >sp|Q3TZZ7|ESYT2_MOUSE Extended synaptotagmin-2 OS=Mus musculus GN=Esyt2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 160/348 (45%), Gaps = 24/348 (6%)
Query: 7 VLGVLGFGFIGLPLG-LLVGFFLFIYSKPNDDQVEEPLVTPLC----ELDTIPLFDLLPE 61
+L V G++GL +L+ L + + + L L E + L +
Sbjct: 47 LLPVYALGYLGLSFSWVLLALGLLAWCRRSRGLKASRLCRALALLEDEEQAVRLGVRACD 106
Query: 62 IPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFENL 121
+P WV PD ER +WLN+ + MWP++ + I R T +P + + F +
Sbjct: 107 LPAWVHFPDTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAV--RGANAHLSTFSFTKV 164
Query: 122 TLGTLPPTIYGIRVYETN--ENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFA 179
+G P + G++VY N + Q++++ + + GN I L +K R V+ +QI
Sbjct: 165 DVGQQPLRVNGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRYFCRAGVK--SIQIHG 222
Query: 180 APRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAG 239
R+ L+PL+ P + + + +P ++ L +++ IPGL I ++
Sbjct: 223 TMRVILEPLIGDMPLVGALSIFFLRKPLLEINWTGL-TNLLDIPGLNGLSDTIILDIISN 281
Query: 240 IYIWPQTYEIPILDASSVAIKK---PVGILHVKVVRASKLLKKDFL------GTSDPYVK 290
+ P +P++ +A + P G+L + + A L KD G SDPY
Sbjct: 282 YLVLPNRITVPLVSEVQIAQLRFPIPKGVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYGI 341
Query: 291 LSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWD 338
+ + + ++ V K+NL+P+WNE ++ +V E Q L++++FD D
Sbjct: 342 IRVGNQIF---QSKVIKENLSPKWNEVYEALVYEHPGQELEIELFDED 386
|
May play a role as calcium-regulated intrinsic membrane protein. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 477 | ||||||
| 224097856 | 547 | predicted protein [Populus trichocarpa] | 0.966 | 0.842 | 0.760 | 0.0 | |
| 255588268 | 541 | calcium lipid binding protein, putative | 0.958 | 0.844 | 0.732 | 0.0 | |
| 224113059 | 544 | predicted protein [Populus trichocarpa] | 0.947 | 0.830 | 0.733 | 0.0 | |
| 225449024 | 544 | PREDICTED: extended synaptotagmin-2 [Vit | 0.951 | 0.834 | 0.716 | 0.0 | |
| 356535625 | 545 | PREDICTED: tricalbin-2-like [Glycine max | 0.953 | 0.834 | 0.689 | 0.0 | |
| 356574609 | 545 | PREDICTED: tricalbin-1-like [Glycine max | 0.953 | 0.834 | 0.687 | 0.0 | |
| 359481536 | 546 | PREDICTED: extended synaptotagmin-2-like | 0.966 | 0.844 | 0.655 | 1e-179 | |
| 449527095 | 548 | PREDICTED: synaptotagmin-3-like [Cucumis | 0.953 | 0.830 | 0.652 | 1e-178 | |
| 449464400 | 548 | PREDICTED: synaptotagmin-3-like [Cucumis | 0.953 | 0.830 | 0.65 | 1e-177 | |
| 297741612 | 547 | unnamed protein product [Vitis vinifera] | 0.966 | 0.842 | 0.650 | 1e-176 |
| >gi|224097856|ref|XP_002311084.1| predicted protein [Populus trichocarpa] gi|222850904|gb|EEE88451.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/464 (76%), Positives = 413/464 (89%), Gaps = 3/464 (0%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGFL++++ +LGFG IGLP GLL+GFFLF+YSKP D V++P+V PL ELDT L D+LP
Sbjct: 1 MGFLNTLVELLGFG-IGLPFGLLIGFFLFVYSKPKD-TVKDPVVRPLHELDTGALLDILP 58
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
+IPLWVK PDYERVDWLN+FLSDMWPYLDKA+CA +R T Q +F EY GK+KI++IEFE+
Sbjct: 59 DIPLWVKCPDYERVDWLNKFLSDMWPYLDKAVCAMIRRTTQSMFAEYIGKYKIQAIEFEH 118
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
LTLGTLPPTI+G++VYETNE LVMEPA+RWAGNPNIVLVLKL+S ++TVQLVDLQIFAA
Sbjct: 119 LTLGTLPPTIHGLKVYETNEKDLVMEPAIRWAGNPNIVLVLKLMSLQVTVQLVDLQIFAA 178
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
PR+ LKPLVPTFPCFA ++VSLMERPHVDFG+KILGGD+MSIPGLY+F+Q+ I K VA +
Sbjct: 179 PRVALKPLVPTFPCFANILVSLMERPHVDFGLKILGGDVMSIPGLYRFVQEMIKKQVASL 238
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y+WPQT +IPILD+S+V IKKPVGILHVKVVRA KLLK D LGTSDPYVKL+LTGEKLP
Sbjct: 239 YLWPQTLDIPILDSSTVIIKKPVGILHVKVVRAKKLLKADLLGTSDPYVKLNLTGEKLPA 298
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKTT+KKKNLNPEWNENFKLVVK+PESQ LQLQVFDWDKVGGHDRLGMQLVPLK+LTP E
Sbjct: 299 KKTTIKKKNLNPEWNENFKLVVKDPESQALQLQVFDWDKVGGHDRLGMQLVPLKVLTPRE 358
Query: 361 TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSS 420
TK+FTLDLLKHTNISD +D KQRG+IVVELTYVPF+EDSIKFS GS + +S+
Sbjct: 359 TKDFTLDLLKHTNISDSRDKKQRGQIVVELTYVPFREDSIKFSGPLDGNGEMGSVSGRST 418
Query: 421 DEEA-LSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTK 463
EEA LSGAGLLSV+VQGAEDVEG+ H+NPYA++L++G++KRTK
Sbjct: 419 PEEAPLSGAGLLSVMVQGAEDVEGKRHHNPYALVLFRGERKRTK 462
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255588268|ref|XP_002534553.1| calcium lipid binding protein, putative [Ricinus communis] gi|223525050|gb|EEF27829.1| calcium lipid binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/464 (73%), Positives = 409/464 (88%), Gaps = 7/464 (1%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGFLS+VLG LGFGF LP+GLL+GFFLF+YS+P V++P+V PL ELD+ L D+LP
Sbjct: 1 MGFLSTVLGFLGFGFG-LPIGLLLGFFLFVYSQPEHHDVKDPVVRPLHELDSSTLEDILP 59
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
EIPLWVK PDYERVDWLN+ L DMWPYLDKAIC+ +R+TA+PIF EY G++ IE+IEFE+
Sbjct: 60 EIPLWVKCPDYERVDWLNKLLLDMWPYLDKAICSTIRSTAEPIFAEYIGQYMIEAIEFEH 119
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
LTLGTLPP I+G++VYETNE LVMEPA++WAGNPNI+L++KL+S + VQL+DLQIFAA
Sbjct: 120 LTLGTLPPVIHGLKVYETNEKDLVMEPAIKWAGNPNIILMIKLMSLPVRVQLIDLQIFAA 179
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
PRI LKPLVP+FPCFA +VVSLMERPHVDFG+K+LGGD+MSIPGLY+ +Q+ I K VA +
Sbjct: 180 PRIALKPLVPSFPCFANIVVSLMERPHVDFGLKVLGGDLMSIPGLYRLVQETIKKQVARL 239
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y+WPQ +IP+LD+S+VAIKKPVGILHVKVVRA KLLK D LGTSDPYVKLSLTGEKLP
Sbjct: 240 YLWPQFLDIPVLDSSTVAIKKPVGILHVKVVRAMKLLKADLLGTSDPYVKLSLTGEKLPA 299
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKTTVKKKNLNPEWNENFKL+VK+P+SQ+LQLQVFDWDKVGGHDRLGMQ+VPLK+LTP E
Sbjct: 300 KKTTVKKKNLNPEWNENFKLIVKDPQSQVLQLQVFDWDKVGGHDRLGMQVVPLKVLTPGE 359
Query: 361 TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSS 420
KEF LDLLKHTNISDP+D K+RG+IVVELT+VPFK+DS KF+ G+++SS
Sbjct: 360 AKEFILDLLKHTNISDPQDKKRRGQIVVELTFVPFKQDSAKFTEPV------DGGSEKSS 413
Query: 421 DEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKV 464
DEE LSGAGLLSV+VQGAEDVEGE+H+NPYA++L++G+KK+TK+
Sbjct: 414 DEEKLSGAGLLSVIVQGAEDVEGEHHSNPYALVLFRGEKKKTKM 457
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224113059|ref|XP_002316376.1| predicted protein [Populus trichocarpa] gi|222865416|gb|EEF02547.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/472 (73%), Positives = 400/472 (84%), Gaps = 20/472 (4%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGFL++ L LGFG IGLP GLL+GFFLF+YSKP D V++P+V PL ELDT L D+LP
Sbjct: 1 MGFLNAFLEFLGFG-IGLPFGLLIGFFLFVYSKPKD--VKDPVVRPLHELDTDALLDILP 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
+IPLWVK PDYERVDWLN+FL DMWPYLDKAICA +R+T +P+F EY GK+KIE+IEFE+
Sbjct: 58 DIPLWVKCPDYERVDWLNKFLLDMWPYLDKAICAMIRSTTKPMFAEYIGKYKIEAIEFEH 117
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
LTLGTLPP I G++VYET E LVMEPA+RWAGNPNIVLVL+LLS R+ QLVDLQIFAA
Sbjct: 118 LTLGTLPPIIQGLKVYETMEKDLVMEPAIRWAGNPNIVLVLQLLSVRLRFQLVDLQIFAA 177
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
PR+ LKPLVPTFPCFA +VVSLMERPHVDFG+KILGGD+MSIPGLY+ I K VA +
Sbjct: 178 PRVALKPLVPTFPCFANIVVSLMERPHVDFGLKILGGDVMSIPGLYRL--DMIKKQVASL 235
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y+WPQT +IP++DAS++ IKKPVGILHVKVVRA KLLK D LGTSDPYVKL LTGEKLP
Sbjct: 236 YLWPQTLDIPVIDASTMVIKKPVGILHVKVVRAKKLLKADILGTSDPYVKLCLTGEKLPA 295
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKTT+KKKNLNPEWNENFKLVVK+PESQ LQLQVFDWDKVGGHDRLGMQ VPLK+LTP E
Sbjct: 296 KKTTIKKKNLNPEWNENFKLVVKDPESQALQLQVFDWDKVGGHDRLGMQFVPLKVLTPRE 355
Query: 361 TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGND--- 417
TKEFTLDLLKHTNISD +D KQRG+IV+ELTYVPF+EDSI+FS GND
Sbjct: 356 TKEFTLDLLKHTNISDSQDKKQRGQIVLELTYVPFREDSIEFSG-------PLDGNDRRG 408
Query: 418 -----QSSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKV 464
SS +E+LSGAGLLSV+VQGAEDVEG++H NPYA++ ++G++KRTK+
Sbjct: 409 SASGRSSSGDESLSGAGLLSVIVQGAEDVEGKHHINPYALVHFRGERKRTKM 460
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225449024|ref|XP_002272997.1| PREDICTED: extended synaptotagmin-2 [Vitis vinifera] gi|296086005|emb|CBI31446.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/458 (71%), Positives = 397/458 (86%), Gaps = 4/458 (0%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGFLSS+L ++GFG IG+P GLLVGFFLF+YS+P D V++P V PL ELD+ L DLLP
Sbjct: 1 MGFLSSLLDIVGFG-IGIPFGLLVGFFLFVYSQPKD--VQDPDVRPLSELDSSTLMDLLP 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
E+P WVKNP+Y+RVDWLN+F+ +MWPYLDKAIC +R+ AQPIF EY G ++IE+IEFE
Sbjct: 58 ELPFWVKNPNYDRVDWLNKFILNMWPYLDKAICDTIRSMAQPIFAEYIGMYQIEAIEFEK 117
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
L+LGTLPP ++GI+VYETNE +L MEPA++WAGNPNI+LVLK L FRIT+QLVDLQIFAA
Sbjct: 118 LSLGTLPPILHGIKVYETNEKELAMEPAIKWAGNPNIILVLKWLPFRITIQLVDLQIFAA 177
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
PRITLKPLVPTFPCFA++V+SLME+PHVDFG+KILGGDIMSIPGLY+F+Q+ I + VA +
Sbjct: 178 PRITLKPLVPTFPCFASLVLSLMEKPHVDFGLKILGGDIMSIPGLYRFVQETIKREVAKL 237
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y+WPQT EIPILDA++ AIKKPVGILHVKVVRA KLLK DFLG SDPYVKLSL+GE+LP
Sbjct: 238 YLWPQTLEIPILDAATGAIKKPVGILHVKVVRALKLLKMDFLGASDPYVKLSLSGERLPA 297
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKTTVK+KNLNPEWNE FKL+V++P++Q+LQL V+DWDKVG HD+LGMQLVPLKLLTPHE
Sbjct: 298 KKTTVKRKNLNPEWNEKFKLIVRDPQAQVLQLYVYDWDKVGAHDKLGMQLVPLKLLTPHE 357
Query: 361 TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSS 420
T+EFTLDL K+TN+SDP+ KQRGKIVVELT+ PFKED +S Y RK S ++S
Sbjct: 358 TQEFTLDLFKNTNLSDPQ-QKQRGKIVVELTFDPFKEDHECYSGPLDGYGRKESRISRAS 416
Query: 421 DEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGD 458
D++ SGAGLL V +QGAEDVEG+ HNNPYA+IL++G+
Sbjct: 417 DDDTPSGAGLLLVTIQGAEDVEGQRHNNPYAVILFRGE 454
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356535625|ref|XP_003536345.1| PREDICTED: tricalbin-2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/458 (68%), Positives = 387/458 (84%), Gaps = 3/458 (0%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGFLSS LGV GF +G+PLGLLVGFFLF+YS+ +V++P+V P+ EL L +LLP
Sbjct: 1 MGFLSSFLGVFGFA-VGIPLGLLVGFFLFVYSETK--RVKDPVVRPISELGPNSLQELLP 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
EIPLWVK PDYERVDWLN+FL DMWP+LD AIC +R+T QPIF EY GK++I++I+F+
Sbjct: 58 EIPLWVKTPDYERVDWLNKFLLDMWPFLDTAICKIIRSTTQPIFAEYIGKYQIKAIDFDE 117
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
L+LGTLPPT+ G++V ETNE +LVME ++WAGNPNIV+ L + S +IT+QLVDLQIFAA
Sbjct: 118 LSLGTLPPTVCGMKVLETNEKELVMEQVIKWAGNPNIVVSLYVSSLKITIQLVDLQIFAA 177
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
PRITL+PLVPTFPCFA +VVSLME+PHVDFG+ + GGDIMSIPGLY+F+Q+ I K VA +
Sbjct: 178 PRITLRPLVPTFPCFANIVVSLMEKPHVDFGMNVSGGDIMSIPGLYRFVQETIKKQVANL 237
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y+WPQT EIPILD S+VAIKKPVGILHV VVRA KLLK D LGTSDPYVKLSLTG+KLP
Sbjct: 238 YLWPQTLEIPILDESTVAIKKPVGILHVNVVRAQKLLKMDLLGTSDPYVKLSLTGDKLPA 297
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKTTVK+KNLNPEWNE FK+VVK+P+SQ+LQLQV+DWDKVGGHD+LGMQLVPLK+L P+E
Sbjct: 298 KKTTVKRKNLNPEWNEKFKIVVKDPQSQVLQLQVYDWDKVGGHDKLGMQLVPLKVLNPYE 357
Query: 361 TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSS 420
KEF LDLLK TN+++ K RGKIVV+LT+VPFKEDS KF S+ YSRK SG D S
Sbjct: 358 NKEFILDLLKDTNLNETPHKKPRGKIVVDLTFVPFKEDSNKFGGPSEGYSRKESGIDIVS 417
Query: 421 DEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGD 458
D+E GAGLLS+++Q AE+VEG++HNNP+A++ ++G+
Sbjct: 418 DDEVQEGAGLLSIVIQEAEEVEGDHHNNPFAVLTFRGE 455
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574609|ref|XP_003555438.1| PREDICTED: tricalbin-1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/458 (68%), Positives = 383/458 (83%), Gaps = 3/458 (0%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MG +SS LG+LGF +G+PLGL VGFFLF+YS+ V++P+V P+ EL L +LLP
Sbjct: 1 MGLVSSFLGILGFA-VGIPLGLFVGFFLFVYSETK--HVKDPVVRPISELGPNALQELLP 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
EIPLWVK PDYERVDWLN+FL D WP+LD AIC +R+ AQPIF EY GK++I++IEF+
Sbjct: 58 EIPLWVKTPDYERVDWLNKFLLDTWPFLDTAICKIIRSRAQPIFFEYIGKYQIKAIEFDK 117
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
L+LGTLPPT+ GI+V ETN +LVME ++WAGNP IVL + + S +ITVQLVDLQIFAA
Sbjct: 118 LSLGTLPPTVCGIKVLETNGKELVMEQVIKWAGNPEIVLSVYVASLKITVQLVDLQIFAA 177
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
PR+TL+PLVPTFPCFA +VVSLME+PHVDFG+ +LGGDIMSIPGLY+F+Q+ I K VA +
Sbjct: 178 PRVTLRPLVPTFPCFANIVVSLMEKPHVDFGMNVLGGDIMSIPGLYRFVQETIKKQVANL 237
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y+WPQT EIPILD SSVAIKKPVGILHV VVRA KLLK D LGTSDPYVKLSLTG+KLP
Sbjct: 238 YLWPQTLEIPILDESSVAIKKPVGILHVNVVRAQKLLKMDLLGTSDPYVKLSLTGDKLPA 297
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKTTVK+KNLNPEWNE FKLVVK+P+SQ+LQLQV+DWDKVGGHD+LGMQLVPLK+L +E
Sbjct: 298 KKTTVKRKNLNPEWNEKFKLVVKDPQSQVLQLQVYDWDKVGGHDKLGMQLVPLKVLKAYE 357
Query: 361 TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSS 420
KEFTLDLLK TN+++ K RGKIVV+LT+VPFKEDS KF S+ YSRK SG D S
Sbjct: 358 NKEFTLDLLKDTNLNETPRKKPRGKIVVDLTFVPFKEDSSKFGGPSEGYSRKESGIDIVS 417
Query: 421 DEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGD 458
D+E GAGLLS+++Q AE+VEG++HNNP+A++ ++G+
Sbjct: 418 DDEVQEGAGLLSIVIQEAEEVEGDHHNNPFAVLTFRGE 455
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359481536|ref|XP_002276374.2| PREDICTED: extended synaptotagmin-2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 305/465 (65%), Positives = 395/465 (84%), Gaps = 4/465 (0%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGF+S++LG++GFG +G+P GL++G+F+FI+++P D +V P++ PL +LD+ L DLL
Sbjct: 1 MGFVSALLGIIGFG-VGIPFGLVLGYFIFIHNEPQDVKV--PIIRPLHDLDSDSLLDLLD 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
E+PLWVK PDY+R DWLN+F+ DMWPYLDKAIC +R+T +PIF EY GKF+I+SI+FE
Sbjct: 58 EMPLWVKTPDYDRADWLNKFIFDMWPYLDKAICGIIRSTTEPIFAEYIGKFQIKSIDFET 117
Query: 121 LTLGTLPPTIYGIRVYETNE-NQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFA 179
L+LGTL P ++GI+ ETNE N+L++EPA+RWAGNPNI+LVLKLLS RIT+QL DLQI
Sbjct: 118 LSLGTLSPIVHGIKAQETNEVNELILEPAIRWAGNPNIILVLKLLSLRITLQLTDLQISM 177
Query: 180 APRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAG 239
PRI LKPLVPTFPCFA++VVSLME+PHVDFG+K+LGGDIM+IPGLYQFIQK I + VA
Sbjct: 178 VPRIVLKPLVPTFPCFASVVVSLMEKPHVDFGLKLLGGDIMAIPGLYQFIQKTIRRQVAS 237
Query: 240 IYIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLP 299
+Y+WPQT E+PILDA IKKPVG+LHVKVVRA KLLK D LG SDPYVKLSL+GE+LP
Sbjct: 238 LYLWPQTLEMPILDALVAPIKKPVGLLHVKVVRARKLLKMDILGASDPYVKLSLSGERLP 297
Query: 300 WKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH 359
KKT++K K L+PEWNE+FKL+VK+P+SQ+LQL V+DW+KVG HD+LGMQ+VPL+LLTP+
Sbjct: 298 AKKTSIKMKTLDPEWNEDFKLIVKDPKSQVLQLHVYDWEKVGMHDKLGMQVVPLRLLTPN 357
Query: 360 ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQS 419
TK+FTLDLLK+TN +DP + K RGKIVVE+T+ PFKEDS +FS + ++ R SG +++
Sbjct: 358 MTKQFTLDLLKNTNPNDPHNKKYRGKIVVEMTFNPFKEDSERFSGLLNEHMRNDSGGERA 417
Query: 420 SDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKV 464
+++ SGAGLL V++QGAE VEG++HNNPYAIIL+KG++K TK+
Sbjct: 418 TEDVPSSGAGLLLVVIQGAEHVEGKHHNNPYAIILFKGERKNTKL 462
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449527095|ref|XP_004170548.1| PREDICTED: synaptotagmin-3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust.
Identities = 300/460 (65%), Positives = 381/460 (82%), Gaps = 5/460 (1%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGF S ++G++GFG IG+PLGL+VGFF FIYSKP D+V++P++ P+ ELD+ L +++P
Sbjct: 1 MGFFSILMGIVGFG-IGIPLGLVVGFFFFIYSKP--DEVKDPMIRPIYELDSDSLEEVIP 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
EIPLWVK+PD++RVDWLN+FL MWP LDKAIC+++R A+P+F EY GKF+I+SIEFE
Sbjct: 58 EIPLWVKHPDFDRVDWLNKFLEGMWPCLDKAICSSIRGMAEPMFAEYIGKFQIQSIEFET 117
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
L LGTL P +YGI+V+ETNEN++VME A++WAGNPNIVL+L+L S RI +QLVDLQIFAA
Sbjct: 118 LLLGTLSPKLYGIKVHETNENEIVMETAIKWAGNPNIVLILRLFSLRIRIQLVDLQIFAA 177
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
PR+ LKPLVP FPCF +VVSL+E+PHVDFG+KILGGDIMSIPGLYQF+Q+ I K V+ +
Sbjct: 178 PRVALKPLVPAFPCFTNIVVSLLEKPHVDFGMKILGGDIMSIPGLYQFVQETIRKQVSNL 237
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y+WP EIPILDAS A K+PVGILHV VV+A KL K D LGTSDPYVKLSL+GE+LP
Sbjct: 238 YLWPHVLEIPILDASVAATKRPVGILHVNVVKALKLSKMDLLGTSDPYVKLSLSGERLPS 297
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKTTVK NLNP WNE FKL+VK+PESQ+LQLQV+DWDKVGGHDRLGMQLVPLK+LTP+E
Sbjct: 298 KKTTVKMNNLNPIWNEKFKLIVKDPESQVLQLQVYDWDKVGGHDRLGMQLVPLKVLTPYE 357
Query: 361 TKEFTLDLLK--HTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQ 418
TKE TLDLLK +TNI++ ++ K RG++VVEL + PF+E+S KFSS S +++
Sbjct: 358 TKELTLDLLKNTNTNINEYQNKKPRGQLVVELKFTPFREESSKFSSQLDGCGSMVSRDER 417
Query: 419 SSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGD 458
++ + GAGLLSV +QGA VEG+ H+NPYA++ ++G+
Sbjct: 418 DLQDDFVGGAGLLSVKIQGATSVEGKRHSNPYAVMHFRGE 457
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464400|ref|XP_004149917.1| PREDICTED: synaptotagmin-3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 629 bits (1622), Expect = e-177, Method: Compositional matrix adjust.
Identities = 299/460 (65%), Positives = 381/460 (82%), Gaps = 5/460 (1%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGF S ++G++GFG IG+PLGL+VGFF FIYSKP D+V++P++ P+ ELD+ L +++P
Sbjct: 1 MGFFSILMGIVGFG-IGIPLGLVVGFFFFIYSKP--DEVKDPMIRPIYELDSDSLEEVIP 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
EIPLWVK+PD++RVDWLN+FL MWP LDKAIC+++R A+P+F EY GKF+I+SIEFE
Sbjct: 58 EIPLWVKHPDFDRVDWLNKFLEGMWPCLDKAICSSIRGMAEPMFAEYIGKFQIQSIEFET 117
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
L LGTL P +YGI+V+ETNEN++VME A++WAGNPNIVL+L+L S +I +QLVDLQIFAA
Sbjct: 118 LLLGTLSPKLYGIKVHETNENEIVMETAIKWAGNPNIVLILRLFSLQIRIQLVDLQIFAA 177
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
PR+ LKPLVP FPCF +VVSL+E+PHVDFG+KILGGDIMSIPGLYQF+Q+ I K V+ +
Sbjct: 178 PRVALKPLVPAFPCFTNIVVSLLEKPHVDFGMKILGGDIMSIPGLYQFVQETIRKQVSNL 237
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y+WP EIPILDAS A K+PVGILHV VV+A KL K D LGTSDPYVKLSL+GE+LP
Sbjct: 238 YLWPHVLEIPILDASVAATKRPVGILHVNVVKALKLSKMDLLGTSDPYVKLSLSGERLPS 297
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKTTVK NLNP WNE FKL+VK+PESQ+LQLQV+DWDKVGGHDRLGMQLVPLK+LTP+E
Sbjct: 298 KKTTVKMNNLNPIWNEKFKLIVKDPESQVLQLQVYDWDKVGGHDRLGMQLVPLKVLTPYE 357
Query: 361 TKEFTLDLLK--HTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQ 418
TKE TLDLLK +TNI++ ++ K RG++VVEL + PF+E+S KFSS S +++
Sbjct: 358 TKELTLDLLKNTNTNINEYQNKKPRGQLVVELKFTPFREESSKFSSQLDGCGSMVSRDER 417
Query: 419 SSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGD 458
++ + GAGLLSV +QGA VEG+ H+NPYA++ ++G+
Sbjct: 418 DLQDDCVGGAGLLSVKIQGATSVEGKRHSNPYAVMHFRGE 457
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297741612|emb|CBI32744.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust.
Identities = 303/466 (65%), Positives = 393/466 (84%), Gaps = 5/466 (1%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGF+S++LG++GFG +G+P GL++G+F+FI+++P D +V P++ PL +LD+ L DLL
Sbjct: 1 MGFVSALLGIIGFG-VGIPFGLVLGYFIFIHNEPQDVKV--PIIRPLHDLDSDSLLDLLD 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
E+PLWVK PDY+R DWLN+F+ DMWPYLDKAIC +R+T +PIF EY GKF+I+SI+FE
Sbjct: 58 EMPLWVKTPDYDRADWLNKFIFDMWPYLDKAICGIIRSTTEPIFAEYIGKFQIKSIDFET 117
Query: 121 LTLGTLPPTIYG-IRVYETNE-NQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIF 178
L+LGTL P ++G +TNE N+L++EPA+RWAGNPNI+LVLKLLS RIT+QL DLQI
Sbjct: 118 LSLGTLSPIVHGKYSSIKTNEVNELILEPAIRWAGNPNIILVLKLLSLRITLQLTDLQIS 177
Query: 179 AAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVA 238
PRI LKPLVPTFPCFA++VVSLME+PHVDFG+K+LGGDIM+IPGLYQFIQK I + VA
Sbjct: 178 MVPRIVLKPLVPTFPCFASVVVSLMEKPHVDFGLKLLGGDIMAIPGLYQFIQKTIRRQVA 237
Query: 239 GIYIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL 298
+Y+WPQT E+PILDA IKKPVG+LHVKVVRA KLLK D LG SDPYVKLSL+GE+L
Sbjct: 238 SLYLWPQTLEMPILDALVAPIKKPVGLLHVKVVRARKLLKMDILGASDPYVKLSLSGERL 297
Query: 299 PWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTP 358
P KKT++K K L+PEWNE+FKL+VK+P+SQ+LQL V+DW+KVG HD+LGMQ+VPL+LLTP
Sbjct: 298 PAKKTSIKMKTLDPEWNEDFKLIVKDPKSQVLQLHVYDWEKVGMHDKLGMQVVPLRLLTP 357
Query: 359 HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQ 418
+ TK+FTLDLLK+TN +DP + K RGKIVVE+T+ PFKEDS +FS + ++ R SG ++
Sbjct: 358 NMTKQFTLDLLKNTNPNDPHNKKYRGKIVVEMTFNPFKEDSERFSGLLNEHMRNDSGGER 417
Query: 419 SSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKV 464
++++ SGAGLL V++QGAE VEG++HNNPYAIIL+KG++K TK+
Sbjct: 418 ATEDVPSSGAGLLLVVIQGAEHVEGKHHNNPYAIILFKGERKNTKL 463
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 477 | ||||||
| TAIR|locus:2146688 | 540 | SYTC "AT5G04220" [Arabidopsis | 0.893 | 0.788 | 0.606 | 2.2e-146 | |
| TAIR|locus:2198581 | 537 | SYTB "AT1G20080" [Arabidopsis | 0.888 | 0.789 | 0.502 | 5.4e-118 | |
| TAIR|locus:2201036 | 560 | NTMC2T2.1 "AT1G05500" [Arabido | 0.844 | 0.719 | 0.326 | 2.5e-56 | |
| TAIR|locus:2100992 | 510 | NTMC2T4 [Arabidopsis thaliana | 0.712 | 0.666 | 0.356 | 8.9e-54 | |
| TAIR|locus:2184931 | 569 | SYTD "AT5G11100" [Arabidopsis | 0.796 | 0.667 | 0.329 | 8e-53 | |
| WB|WBGene00020443 | 713 | esyt-2 [Caenorhabditis elegans | 0.639 | 0.427 | 0.271 | 9.1e-31 | |
| FB|FBgn0039208 | 849 | Esyt2 [Drosophila melanogaster | 0.637 | 0.358 | 0.267 | 1.6e-28 | |
| TAIR|locus:2047027 | 256 | AT2G21010 "AT2G21010" [Arabido | 0.352 | 0.656 | 0.371 | 3.1e-28 | |
| MGI|MGI:1261845 | 845 | Esyt2 "extended synaptotagmin- | 0.794 | 0.448 | 0.245 | 4.8e-23 | |
| MGI|MGI:1098699 | 891 | Esyt3 "extended synaptotagmin- | 0.559 | 0.299 | 0.262 | 2.7e-22 |
| TAIR|locus:2146688 SYTC "AT5G04220" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1430 (508.4 bits), Expect = 2.2e-146, P = 2.2e-146
Identities = 265/437 (60%), Positives = 342/437 (78%)
Query: 30 IYSKPNDDQVEEPLVTPLCELDTIPLFDLLPEIPLWVKNPDYERVDWLNRFLSDMWPYLD 89
IYS+P+ E P PL E L DLLP+IPLW+KNPDYERVDW N+F+S MWPYLD
Sbjct: 29 IYSQPSHQ--EYPPARPLVETSISVLLDLLPDIPLWMKNPDYERVDWFNKFISYMWPYLD 86
Query: 90 KAICANVRTTAQPIFDEYSGKFKIESIEFENLTLGTLPPTIYGIRVYETNENQLVMEPAL 149
KA+C +R++ QP+F +Y G F IESIEFENL+LGTLPPT++G++ YETNE +L+ EP++
Sbjct: 87 KAVCGIIRSSVQPLFADYIGTFCIESIEFENLSLGTLPPTVHGVKFYETNEKELLFEPSI 146
Query: 150 RWAGNPNIVLVLKLLSFRITVQLVDLQIFAAPRITLKPLVPTFPCFATMVVSLMERPHVD 209
+WAGNPNIVLVLK+LS RI VQLVDLQ FA R+ LKPL+PTFPCF +VVSLME+PHVD
Sbjct: 147 KWAGNPNIVLVLKVLSLRIRVQLVDLQFFAIVRVALKPLLPTFPCFGMVVVSLMEKPHVD 206
Query: 210 FGIKILGGDIMSIPGLYQFIQKCITKYVAGIYIWPQTYEIPILDASSVAIKKPVGILHVK 269
FG+K+LGGD+MSIPGLY+++Q+ I + V+ +Y WPQ EIPILD+S+ ++KKPVG+LHV
Sbjct: 207 FGLKVLGGDLMSIPGLYRYVQETIKRQVSSMYHWPQVLEIPILDSSTASVKKPVGLLHVS 266
Query: 270 VVRASKLLKKDFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVVKEPESQI 329
++RA LLKKD LGTSDPYVKLSLTGE EWNE+FKL+VK+P SQ+
Sbjct: 267 ILRARNLLKKDLLGTSDPYVKLSLTGEKLPAKKTTIKKRNLNPEWNEHFKLIVKDPNSQV 326
Query: 330 LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNI-SDPKDMKQRGKIVV 388
LQL+VFDWDKVGGHDRLGMQ++PL+ + P E KEF LDL+K++N+ D D K+RG++ V
Sbjct: 327 LQLEVFDWDKVGGHDRLGMQMIPLQKINPGERKEFNLDLIKNSNVVMDSGDKKKRGRLEV 386
Query: 389 ELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGEN-HN 447
+L YVPF+E+SIK +K SR+ S D++ LS AGLLSV VQ A+DVEG+ H+
Sbjct: 387 DLRYVPFREESIK----RRKESRE---EKSSEDDDFLSQAGLLSVAVQSAKDVEGKKKHS 439
Query: 448 NPYAIILYKGDKKRTKV 464
NPYA++L++G+KK+TK+
Sbjct: 440 NPYAVVLFRGEKKKTKM 456
|
|
| TAIR|locus:2198581 SYTB "AT1G20080" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
Identities = 218/434 (50%), Positives = 304/434 (70%)
Query: 30 IYSKPNDDQVEEPLVTPLCELDTIPLFDLLPEIPLWVKNPDYERVDWLNRFLSDMWPYLD 89
IY + D VE+P + PL ELD+ + + PEIP+WVKNPD++R+DWLN+ + MWPY+D
Sbjct: 29 IYFQSTD--VEDPEIKPLVELDSETIATMFPEIPMWVKNPDFDRIDWLNKLIGHMWPYMD 86
Query: 90 KAICANVRTTAQPIFDEYSGKFKIESIEFENLTLGTLPPTIYGIRVYETNENQLVMEPAL 149
KAIC ++ A+PI E +KI+S+EFE LTLG+LPP+ G++VY T++ +++ME ++
Sbjct: 87 KAICKMAKSIAKPIIAEQIPNYKIDSVEFEMLTLGSLPPSFQGMKVYATDDKEIIMELSV 146
Query: 150 RWAGNPNIVLVLKLLSFRITVQLVDLQIFAAPRITLKPLVPTFPCFATMVVSLMERPHVD 209
+WAGNPNI++V K + TVQ++DLQ++A PRITLKPLVP+FPCFA + VSLM++P VD
Sbjct: 147 KWAGNPNIIVVAKAFGLKATVQVIDLQVYATPRITLKPLVPSFPCFANIFVSLMDKPQVD 206
Query: 210 FGIKILGGDIMSIPGLYQFIQKCITKYVAGIYIWPQTYEIPILDASSVAIKKPVGILHVK 269
FG+K+LG D+M+IPGLY+F+Q+ I VA +Y+WP+T + I+D S A+KKPVG+L VK
Sbjct: 207 FGLKLLGADVMAIPGLYRFVQEIIKDQVANMYLWPKTLNVQIMDPSK-AMKKPVGLLSVK 265
Query: 270 VVRASKLLKKDFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVVKEPESQI 329
V++A KL KKD LG SDPYVKL+L+G+ EWNE F LVVKEPESQ
Sbjct: 266 VIKAIKLKKKDLLGGSDPYVKLTLSGDKVPGKKTVVKHSNLNPEWNEEFDLVVKEPESQE 325
Query: 330 LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVE 389
LQL V+DW++VG HD++GM ++ LK LTP E K TL+LLK +P K RG++VVE
Sbjct: 326 LQLIVYDWEQVGKHDKIGMNVIQLKDLTPEEPKLMTLELLKSMEPKEPVSEKSRGQLVVE 385
Query: 390 LTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGENHNNP 449
+ Y PFK+D I + K + E S GLL V+V AED+EG+ H NP
Sbjct: 386 VEYKPFKDDDIPENIDDPNAVEK-------APEGTPSTGGLLVVIVHEAEDLEGKYHTNP 438
Query: 450 YAIILYKGDKKRTK 463
+L++G++++TK
Sbjct: 439 SVRLLFRGEERKTK 452
|
|
| TAIR|locus:2201036 NTMC2T2.1 "AT1G05500" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
Identities = 139/426 (32%), Positives = 231/426 (54%)
Query: 58 LLPEI-PLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESI 116
L PE P WV + +++ WLN L+ +WPY+D+A ++ + +P+ ++Y + S+
Sbjct: 54 LPPEFYPSWVVFSERQKLTWLNHHLTKIWPYVDEAASELIKASVEPVLEQYRPAI-VASL 112
Query: 117 EFENLTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLK-LLSFRITVQLVDL 175
F LTLGT+ P G+ V + ++N + +E ++W GNPNIVL +K L+ + +Q+ ++
Sbjct: 113 TFSKLTLGTVAPQFTGVSVIDGDKNGITLELDMQWDGNPNIVLGVKTLVGVSLPIQVKNI 172
Query: 176 QIFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITK 235
R+ +PLV FPCF + VSL E+ +DF +K++GGDI +IPGL + I++ I
Sbjct: 173 GFTGVFRLIFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGDISAIPGLSEAIEETIRD 232
Query: 236 YVAGIYIWPQTYEIPIL--DASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSL 293
V WP IPI+ D S + +K PVG+L VK+V+A L KD +G SDP+ K+ +
Sbjct: 233 AVEDSITWPVRKVIPIIPGDYSDLELK-PVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFI 291
Query: 294 TGEXXXXXXXXXXXXXXXXEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPL 353
WNE+F+ VV++ +Q L ++++D + V + +G + L
Sbjct: 292 RPLREKTKRSKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEGVQASELIGCAQIRL 351
Query: 354 KLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKE-DSI--KFSSVSKKYS 410
L P + K+ L L+K I +D K RG++ +EL Y+P+ + I F + S
Sbjct: 352 CELEPGKVKDVWLKLVKDLEIQ--RDTKNRGEVHLELLYIPYGSGNGIVNPFVTSSMTSL 409
Query: 411 RKGSGNDQSSDEEALSGA-------GLLSVLVQGAEDVEGEN---HNNPYAIILYK--GD 458
+ ND + +E A S G+LSV V AE++ ++ +PY ++ K G
Sbjct: 410 ERVLKNDTTDEENASSRKRKDVIVRGVLSVTVISAEEIPIQDLMGKADPYVVLSMKKSGA 469
Query: 459 KKRTKV 464
K +T+V
Sbjct: 470 KSKTRV 475
|
|
| TAIR|locus:2100992 NTMC2T4 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
Identities = 126/353 (35%), Positives = 191/353 (54%)
Query: 63 PLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFENLT 122
P W+ P +E+V WLN+ LS MWPY+ +A +R + +P+ ++Y I S++F LT
Sbjct: 59 PQWISFPAFEQVKWLNKLLSKMWPYIAEAATMVIRDSVEPLLEDYRPP-GITSLKFSKLT 117
Query: 123 LGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAAPR 182
LG + P I GIRV E Q+ M+ LRW G+PNIVL + L I +QL DLQ+F R
Sbjct: 118 LGNVAPKIEGIRVQSFKEGQVTMDVDLRWGGDPNIVLGVTALVASIPIQLKDLQVFTVAR 177
Query: 183 ITLKPLVPTFPCFATMVVSLME--RPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
+ + L PC + +VV+L+ +P +D+ +K +GG + +IPGL I + V +
Sbjct: 178 VIFQ-LADEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAIPGLSDMIDDTVDTIVKDM 236
Query: 241 YIWPQTYEIPI----LDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE 296
WP +PI +D S + +K P G L V VV+A+ L K+ +G SDPY + +
Sbjct: 237 LQWPHRIVVPIGGIPVDLSDLELK-PQGKLIVTVVKATNLKNKELIGKSDPYATIYI--R 293
Query: 297 XXXXXXXXXXXXXXXXEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLL 356
W++ F+L+ ++ E+Q L ++VFD D VG +RLG+ +PL L
Sbjct: 294 PVFKYKTKAIENNLNPVWDQTFELIAEDKETQSLTVEVFDKD-VGQDERLGLVKLPLSSL 352
Query: 357 TPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF-KEDSIKFSSVSKK 408
TKE L+LL + KD K RG I +++ Y F KE+ + KK
Sbjct: 353 EAGVTKELELNLLSSLDTLKVKDKKDRGSITLKVHYHEFNKEEQMAALEDEKK 405
|
|
| TAIR|locus:2184931 SYTD "AT5G11100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
Identities = 134/407 (32%), Positives = 217/407 (53%)
Query: 58 LLPE--IPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIES 115
LLP P WV ++++WLN L +WPY+++A ++++ +P+ ++Y+ + S
Sbjct: 53 LLPGDFYPSWVVFSQRQKLNWLNLELEKIWPYVNEAASELIKSSVEPVLEQYTPAM-LAS 111
Query: 116 IEFENLTLGTLPPTIYGIRVYETNE--NQLVMEPALRWAGNPNIVLVLK-LLSFRITVQL 172
++F TLGT+ P G+ + E+ N + ME ++W GNP IVL +K LL + +++
Sbjct: 112 LKFSKFTLGTVAPQFTGVSILESESGPNGITMELEMQWDGNPKIVLDVKTLLGVSLPIEV 171
Query: 173 VDLQIFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKC 232
++ R+ KPLV FPCF + SL E+ +DF +K++GG++ SIPG+ I++
Sbjct: 172 KNIGFTGVFRLIFKPLVDEFPCFGALSYSLREKKGLDFTLKVIGGELTSIPGISDAIEET 231
Query: 233 ITKYVAGIYIWPQTYEIPIL--DASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVK 290
I + WP IPIL D S + +K PVG L VKVV+A L KD +G SDPY
Sbjct: 232 IRDAIEDSITWPVRKIIPILPGDYSDLELK-PVGKLDVKVVQAKDLANKDMIGKSDPYAI 290
Query: 291 LSLTGEXXXXXXXXXXXXXXXXEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQL 350
+ + WNE+F+ +V++ +Q L ++VFD + VG +G
Sbjct: 291 VFIRPLPDRTKKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEGVGSSQLIGAAQ 350
Query: 351 VPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF-KEDSIK--FS---- 403
VPL L P + K+ L L+K I +D K RG++ +EL Y P KE +K F+
Sbjct: 351 VPLNELVPGKVKDIWLKLVKDLEIQ--RDTKNRGQVQLELLYCPLGKEGGLKNPFNPDYS 408
Query: 404 -SVSKKYSRKGSGNDQSSDEEALSGA--------GLLSVLVQGAEDV 441
++ +K + S + ++D + L + G+LSV V AED+
Sbjct: 409 LTILEKVLKPESEDSDATDMKKLVTSKKKDVIVRGVLSVTVVAAEDL 455
|
|
| WB|WBGene00020443 esyt-2 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 347 (127.2 bits), Expect = 9.1e-31, P = 9.1e-31
Identities = 89/328 (27%), Positives = 168/328 (51%)
Query: 59 LPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQP-IFDEYSGKFKIESIE 117
L ++P WV+ PD ERV+WLN+ + +WPY+ + + P + + G FK + +
Sbjct: 72 LQDLPAWVQFPDTERVEWLNKVIHQLWPYVGEYTKTFMNDFIIPQVKAQMPGMFK--NFK 129
Query: 118 FENLTLGTLPPTIYGIRVYETN--ENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDL 175
F + +G +P + GI+VY TN ++++++ + +AG+ + + F T + ++
Sbjct: 130 FTKMDMGDIPCRVGGIKVYTTNVGRDRIIVDMDVAYAGDADFTV--SCCGF--TGGMNNI 185
Query: 176 QIFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITK 235
Q R LKPL+P P + + +E P +DF + +G +++ +PGL I+ I
Sbjct: 186 QFSGKLRAILKPLLPYPPMVGGVSGTFLEMPKMDFNLTGMG-EMVELPGLIDAIRSVINS 244
Query: 236 YVAGIYIWPQTYEIPI---LDASSVAIKKPVGILHVKVVRASKLLKKD--FL--GTSDPY 288
+A + + P +P+ +D + + +P G++ +K++ A L +D F+ G SDPY
Sbjct: 245 QIAALCVLPNEIVVPLAPDVDVTQLYFPEPDGVVRLKIIEAKNLENRDISFIKKGKSDPY 304
Query: 289 VKLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGM 348
++ + + WNE F+ VV + + Q L++++FD D+ G + LG
Sbjct: 305 AEIQVGSQFFKTRTIDDDLNPI---WNEYFEAVVDQADGQKLRIELFDEDQ-GKDEELGR 360
Query: 349 QLVPLKLLTPHET--KEFTLDLLKHTNI 374
V LKL+ T K + L+ KH ++
Sbjct: 361 LSVDLKLVQAKGTIDKWYPLEGCKHGDL 388
|
|
| FB|FBgn0039208 Esyt2 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 328 (120.5 bits), Expect = 1.6e-28, P = 1.6e-28
Identities = 87/325 (26%), Positives = 153/325 (47%)
Query: 59 LPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEF 118
+ E+P WV PD ER +WLN+ L +WP + V+ T +P +K+ F
Sbjct: 143 IDELPAWVYFPDVERCEWLNKILKQVWPNANHFARTLVKETIEPNVALALANYKMHGFRF 202
Query: 119 ENLTLGTLPPTIYGIRVYETN--ENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQ 176
+ + LGT+PP I G+++Y+ N N+++M+ L +A + +I L + I D Q
Sbjct: 203 DRIILGTIPPRIGGVKIYDKNVDRNEIIMDLDLFYASDCDINFYLGGMKGGIK----DFQ 258
Query: 177 IFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGG-DIMSIPGLYQFIQKCITK 235
I R+ +KPL+ + P + + + P++DF + +G D M +PGL +++ I +
Sbjct: 259 IHGWVRVVMKPLIRSMPLVGGLQIFFLNNPNIDFNL--VGVIDFMDMPGLSDLLRRIIVE 316
Query: 236 YVAGIYIWPQTYEIPILD-ASSVAIK--KPVGILHVKVVRASKLLKKDFL----GTSDPY 288
+ + + P I + + S+VA+K +P GIL + VV A L+KKD G SDPY
Sbjct: 317 QIGNVMVLPNKLPISLSEEVSAVALKMPEPEGILRIHVVEAKDLMKKDISVLGKGKSDPY 376
Query: 289 VKLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGM 348
+++ + W E + Q +++Q+ D D + LG
Sbjct: 377 AIINVGAQEFKTQIIDNNVNPKWDYWCEATVFIEM---GQFVEIQLKDSDDSKKDENLGR 433
Query: 349 QLVPLKLLTPHETKE--FTLDLLKH 371
+ + + + TL+ KH
Sbjct: 434 ASIDIASVIKKGVVDSWLTLEDAKH 458
|
|
| TAIR|locus:2047027 AT2G21010 "AT2G21010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 68/183 (37%), Positives = 110/183 (60%)
Query: 282 LGTSDPYVKLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVVKEPESQILQLQVFDWDKVG 341
+G +PYV++ L+ + EWNE FK V++P++Q+L+ V+ W+K+G
Sbjct: 1 MGMINPYVQIELSEDKISSKKTTVKHKNLNPEWNEEFKFSVRDPKTQVLEFNVYGWEKIG 60
Query: 342 GHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDP-KDMKQRGKIVVELTYVPFKEDSI 400
HD++GM ++ LK L P E K FTL+L K + + + K RGK+ VEL Y PF E+ +
Sbjct: 61 KHDKMGMNVLALKELAPDERKAFTLELRKTLDGGEEGQPGKYRGKLEVELLYKPFTEEEM 120
Query: 401 KFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKK 460
+ +V K + +G+ ++G G+L V+V AEDVEG++H NPY I +KG+++
Sbjct: 121 Q--AVQK--APEGT---------PVAG-GMLVVIVHSAEDVEGKHHTNPYVHIYFKGEER 166
Query: 461 RTK 463
+TK
Sbjct: 167 KTK 169
|
|
| MGI|MGI:1261845 Esyt2 "extended synaptotagmin-like protein 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 104/423 (24%), Positives = 196/423 (46%)
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
++P WV PD ER +WLN+ + MWP++ + I R T +P + + F
Sbjct: 106 DLPAWVHFPDTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAVR--GANAHLSTFSFTK 163
Query: 121 LTLGTLPPTIYGIRVYETN--ENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIF 178
+ +G P + G++VY N + Q++++ + + GN I L +K R V+ +QI
Sbjct: 164 VDVGQQPLRVNGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRYFCRAGVK--SIQIH 221
Query: 179 AAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVA 238
R+ L+PL+ P + + + +P ++ L +++ IPGL I ++
Sbjct: 222 GTMRVILEPLIGDMPLVGALSIFFLRKPLLEINWTGLT-NLLDIPGLNGLSDTIILDIIS 280
Query: 239 GIYIWPQTYEIPILDASSVA-IKKPV--GILHVKVVRASKLLKKD-FL-----GTSDPYV 289
+ P +P++ +A ++ P+ G+L + + A L KD +L G SDPY
Sbjct: 281 NYLVLPNRITVPLVSEVQIAQLRFPIPKGVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYG 340
Query: 290 KLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQ 349
+ + + +WNE ++ +V E Q L++++FD D D LG
Sbjct: 341 IIRVGNQIFQSKVIKENLSP---KWNEVYEALVYEHPGQELEIELFDEDP-DKDDFLGSL 396
Query: 350 LVPLKLLTPHETKE--FTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSK 407
++ L + + FTLD + PK GK+ ++L ++ D+ +++ K
Sbjct: 397 MIDLIEVEKERLLDEWFTLDEV-------PK-----GKLHLKLEWLTLMPDA---ANLDK 441
Query: 408 KYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDV-EGENHN-NPYAII-LYKGDK-KRTK 463
+ + DQ+SD LS A LL + + A ++ G+ N NP ++ + G K + +K
Sbjct: 442 VLADIRADKDQASD--GLSSA-LLILYLDSARNLPSGKKINSNPNPLVQMSVGHKAQESK 498
Query: 464 VSF 466
+ +
Sbjct: 499 IRY 501
|
|
| MGI|MGI:1098699 Esyt3 "extended synaptotagmin-like protein 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 286 (105.7 bits), Expect = 2.7e-22, P = 2.7e-22
Identities = 75/286 (26%), Positives = 138/286 (48%)
Query: 62 IPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFENL 121
+P W+ PD ERV+W N+ + +WPYL + +R +P E S + + F L
Sbjct: 110 LPAWIHFPDVERVEWANKIIIQIWPYLSMIMENKIREKLEPKIREKS--IHLRTFTFTKL 167
Query: 122 TLGTLPPTIYGIRVY--ETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFA 179
G P + G++V+ + N ++ ++ + + G+ I + L+ + R V V LQ
Sbjct: 168 YFGQKCPKVNGVKVHTDKRNRRKVTLDLQICYIGDCEISVELQKI--RGGVSGVQLQ--G 223
Query: 180 APRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAG 239
R+ L+PL+ P + V +++PH+ L +++ +PG+ + + +A
Sbjct: 224 TLRVILEPLLVDKPFIGAVTVFFLQKPHLQINWTGLT-NLLDMPGINELSDSLLEDLIAA 282
Query: 240 IYIWPQTYEIPI---LDASSVAIKKPVGILHVKVVRASKLLKKD-FLGT---SDPYVKLS 292
+ P +P+ LD +++ + P G++ V ++ A KL +KD FLG SDPY K+S
Sbjct: 283 HLVLPNRVTVPVKKGLDVTNLRVPLPCGVIRVHLLEAKKLAQKDNFLGLGGKSDPYAKVS 342
Query: 293 LTGEXXXXXXXXXXXXXXXXEWNENFKLVVKEPESQILQLQVFDWD 338
+ + WNE F+ +V E Q L++ ++D D
Sbjct: 343 IGLQHCRSRTIYKNLNPT---WNEVFEFMVYEVPGQDLEVDLYDED 385
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7XA06 | SYT3_ARATH | No assigned EC number | 0.6334 | 0.9371 | 0.8277 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 477 | |||
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 6e-42 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 2e-28 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 9e-27 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 9e-26 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 5e-23 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 7e-20 | |
| cd08386 | 125 | cd08386, C2A_Synaptotagmin-7, C2A domain first rep | 2e-19 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 3e-18 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 2e-17 | |
| cd04033 | 133 | cd04033, C2_NEDD4_NEDD4L, C2 domain present in the | 5e-17 | |
| cd08385 | 124 | cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain | 7e-17 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 1e-16 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 4e-16 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 7e-16 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 1e-15 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 2e-15 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 4e-15 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 2e-14 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 4e-14 | |
| cd04037 | 124 | cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer | 4e-14 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 1e-13 | |
| cd04036 | 119 | cd04036, C2_cPLA2, C2 domain present in cytosolic | 2e-13 | |
| cd08676 | 153 | cd08676, C2A_Munc13-like, C2 domain first repeat i | 2e-13 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 2e-13 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 3e-13 | |
| cd08387 | 124 | cd08387, C2A_Synaptotagmin-8, C2A domain first rep | 3e-13 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 7e-13 | |
| cd04047 | 110 | cd04047, C2B_Copine, C2 domain second repeat in Co | 7e-13 | |
| cd08403 | 134 | cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s | 7e-13 | |
| cd08382 | 123 | cd08382, C2_Smurf-like, C2 domain present in Smad | 3e-12 | |
| cd08521 | 123 | cd08521, C2A_SLP, C2 domain first repeat present i | 7e-12 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 2e-11 | |
| cd08390 | 123 | cd08390, C2A_Synaptotagmin-15-17, C2A domain first | 3e-11 | |
| cd08404 | 136 | cd08404, C2B_Synaptotagmin-4, C2 domain second rep | 4e-11 | |
| cd00275 | 128 | cd00275, C2_PLC_like, C2 domain present in Phospho | 1e-10 | |
| cd04041 | 111 | cd04041, C2A_fungal, C2 domain first repeat; funga | 1e-10 | |
| cd08373 | 127 | cd08373, C2A_Ferlin, C2 domain first repeat in Fer | 2e-10 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 3e-10 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 3e-10 | |
| cd04018 | 151 | cd04018, C2C_Ferlin, C2 domain third repeat in Fer | 3e-10 | |
| cd04021 | 125 | cd04021, C2_E3_ubiquitin_ligase, C2 domain present | 5e-10 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 5e-10 | |
| cd04009 | 133 | cd04009, C2B_Munc13-like, C2 domain second repeat | 5e-10 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 6e-10 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 6e-10 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 2e-09 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 2e-09 | |
| cd04045 | 120 | cd04045, C2C_Tricalbin-like, C2 domain third repea | 4e-09 | |
| cd08410 | 135 | cd08410, C2B_Synaptotagmin-17, C2 domain second re | 1e-08 | |
| cd04020 | 162 | cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat | 3e-08 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 8e-08 | |
| cd08393 | 125 | cd08393, C2A_SLP-1_2, C2 domain first repeat prese | 8e-08 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 1e-07 | |
| cd04039 | 108 | cd04039, C2_PSD, C2 domain present in Phosphatidyl | 5e-07 | |
| cd04011 | 111 | cd04011, C2B_Ferlin, C2 domain second repeat in Fe | 5e-07 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 5e-07 | |
| cd08678 | 126 | cd08678, C2_C21orf25-like, C2 domain found in the | 1e-06 | |
| cd08392 | 128 | cd08392, C2A_SLP-3, C2 domain first repeat present | 2e-06 | |
| cd04010 | 148 | cd04010, C2B_RasA3, C2 domain second repeat presen | 3e-06 | |
| cd04029 | 125 | cd04029, C2A_SLP-4_5, C2 domain first repeat prese | 5e-06 | |
| cd08406 | 136 | cd08406, C2B_Synaptotagmin-12, C2 domain second re | 5e-06 | |
| cd04032 | 127 | cd04032, C2_Perforin, C2 domain of Perforin | 1e-05 | |
| cd08688 | 110 | cd08688, C2_KIAA0528-like, C2 domain found in the | 2e-05 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 4e-05 | |
| cd08409 | 137 | cd08409, C2B_Synaptotagmin-15, C2 domain second re | 6e-05 | |
| cd04052 | 111 | cd04052, C2B_Tricalbin-like, C2 domain second repe | 1e-04 | |
| cd04048 | 120 | cd04048, C2A_Copine, C2 domain first repeat in Cop | 2e-04 | |
| cd04054 | 121 | cd04054, C2A_Rasal1_RasA4, C2 domain first repeat | 2e-04 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 2e-04 | |
| cd08381 | 122 | cd08381, C2B_PI3K_class_II, C2 domain second repea | 3e-04 | |
| cd08388 | 128 | cd08388, C2A_Synaptotagmin-4-11, C2A domain first | 4e-04 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 7e-04 | |
| cd08383 | 117 | cd08383, C2A_RasGAP, C2 domain (first repeat) of R | 0.002 | |
| cd08378 | 121 | cd08378, C2B_MCTP_PRT_plant, C2 domain second repe | 0.003 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 0.004 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 6e-42
Identities = 119/451 (26%), Positives = 189/451 (41%), Gaps = 73/451 (16%)
Query: 2 GFLSSVLGVLGFGFIGLPLGLLVGFFLFI-----YSKPNDDQVEEPLVTPLCELDTIPLF 56
S + G LGF F L +LV +++ + D V++ L E
Sbjct: 165 SVASWIFGYLGFSFASLFFIILVTMYVYRTCIKRVRRNIRDLVQQELSEEKLE------- 217
Query: 57 DLLPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESI 116
DYE V+WLN FL WP ++ +I V E F I+++
Sbjct: 218 ------------NDYESVEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSF-IDAL 264
Query: 117 EFENLTLGTLPPTIYGIRVY-ETNENQLVME---------------PALRWAGNPNIVLV 160
+ TLG+ PP I GIR Y T + +VM+ + R + NP I LV
Sbjct: 265 ALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDISDVTATSARASVNPKISLV 324
Query: 161 LKL----LSFRITVQLVDLQIFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILG 216
+K SF + + + DL R+ ++ L+ +P T+ L+E P DF + LG
Sbjct: 325 VKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLG 383
Query: 217 G-----DIMSIPGLYQFIQKCITKYVAGIYIWPQTYEIPILDASSVAIKKPVGILHVKVV 271
G DI +IPGL +FIQ+ I + + + P + I I + +G++ VK+
Sbjct: 384 GDFFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIK 443
Query: 272 RASKLLKKDFL--GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQI 329
A L K D GT DPY+ ++ + + KT VKK LNP WNE F +++ +
Sbjct: 444 SAEGLKKSDSTINGTVDPYITVTFSDRVIG--KTRVKKNTLNPVWNETFYILL-NSFTDP 500
Query: 330 LQLQVFDWDKVGGHDRLGMQLVPLKLL-----TPHETKEFTLDLLKHTNISDPKDMKQRG 384
L L ++D++ +G + L LL +E EF + K G
Sbjct: 501 LNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLR------------NTKNVG 548
Query: 385 KIVVELTYVPFKEDSIKFSSVSKKYSRKGSG 415
++ +L + P ED + + +G
Sbjct: 549 RLTYDLRFFPVIEDKKELKGSVEPLEDSNTG 579
|
Length = 1227 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 2e-28
Identities = 40/83 (48%), Positives = 50/83 (60%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
L V V+ A L KD G SDPYVK+SL G+K KKT V K LNP WNE F V P
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60
Query: 326 ESQILQLQVFDWDKVGGHDRLGM 348
E L+++V+D+D+ G D +G
Sbjct: 61 ELAELRIEVYDYDRFGKDDFIGE 83
|
Length = 85 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 9e-27
Identities = 46/104 (44%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
L V V+ A L KD G SDPYVK+SL G++ KT V K LNP WNE F+ V +P
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQ--KFKTKVVKNTLNPVWNETFEFPVLDP 58
Query: 326 ESQILQLQVFDWDKVGGHDRLGMQLVPLK-LLTPHETKEFTLDL 368
ES L ++V+D D+ D LG +PL LL + E L L
Sbjct: 59 ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 9e-26
Identities = 41/90 (45%), Positives = 53/90 (58%)
Query: 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE 324
L VK++ A L KD G SDPYVK+SL G+ KKT V K LNP WNE F+ V
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60
Query: 325 PESQILQLQVFDWDKVGGHDRLGMQLVPLK 354
PE L+++V+D D+ G D +G +PL
Sbjct: 61 PELAELEIEVYDKDRFGRDDFIGQVTIPLS 90
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 5e-23
Identities = 46/103 (44%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
L V V+ A L D G SDP+VK L GEK+ KT KK LNP WNE+F++ V
Sbjct: 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKV--FKTKTIKKTLNPVWNESFEVPVPSR 58
Query: 326 ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368
+L+++V+DWD+ G D LG + L L P ET E TL L
Sbjct: 59 VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPL 101
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 7e-20
Identities = 39/85 (45%), Positives = 53/85 (62%), Gaps = 5/85 (5%)
Query: 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
+G+L V+VVR + L +DF +SDPYV L+L +K+ KT V KKNLNP WNE L V
Sbjct: 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKV---KTRVIKKNLNPVWNEELTLSV 56
Query: 323 KEPESQILQLQVFDWDKVGGHDRLG 347
P + + +L+VFD D D +G
Sbjct: 57 PNPMAPL-KLEVFDKDTFSKDDSMG 80
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 2e-19
Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 11/120 (9%)
Query: 256 SVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKK----TTVKKKNLN 311
SV+ L +K+++A +L KDF GTSDP+VK+ L LP KK T VK+KNLN
Sbjct: 8 SVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYL----LPDKKHKLETKVKRKNLN 63
Query: 312 PEWNENFK---LVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368
P WNE F ++ + ++L LQV D+D+ +D +G +PL + E + F DL
Sbjct: 64 PHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL 123
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 3e-18
Identities = 42/108 (38%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
LH ++RA L D G SDPYVKL+L K +T K NPE+NE
Sbjct: 17 LHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGI 76
Query: 324 EPE---SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368
E + L+L V D D+ G+D LG +PLK L P++TK+F + L
Sbjct: 77 TEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNICL 123
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 2e-17
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
L V+ A L KD GTSDP+V++ G+ L +T+V KK+ P WNE F+ + E
Sbjct: 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTL---ETSVVKKSCYPRWNEVFEFELMEG 58
Query: 326 ESQILQLQVFDWDKVGGHDRLGMQLVPLKLL--TPHETKEFTL 366
L ++V+DWD V +D LG + ++ L E F L
Sbjct: 59 ADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRL 101
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 5e-17
Identities = 40/93 (43%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSL----TGEKLPWKKTTVKKKNLNPEWNENFKL 320
IL VKV+ L KKD G SDPYVK+SL ++ +T KK LNP+WNE F
Sbjct: 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFF 60
Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPL 353
V E ++L +VFD +++ D LG VPL
Sbjct: 61 RVNPREHRLL-FEVFDENRLTRDDFLGQVEVPL 92
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133 |
| >gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 7e-17
Identities = 42/105 (40%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKK----TTVKKKNLNPEWNENF--K 319
L V +++A+ L D GTSDPYVK+ L LP KK T V +K LNP +NE F K
Sbjct: 18 LTVGIIQAADLPAMDMGGTSDPYVKVYL----LPDKKKKFETKVHRKTLNPVFNETFTFK 73
Query: 320 LVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKL-LTPHETKE 363
+ E ++ L V+D+D+ HD +G VPL H T+E
Sbjct: 74 VPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEE 118
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 1e-16
Identities = 40/90 (44%), Positives = 55/90 (61%), Gaps = 8/90 (8%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLV 321
G L V ++ A L K D G SDPYVK+ L G++L KKTT+KK+ LNP +NE+F
Sbjct: 15 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE 74
Query: 322 VKEPESQI----LQLQVFDWDKVGGHDRLG 347
V P QI L + V D+D++G +D +G
Sbjct: 75 V--PFEQIQKVHLIVTVLDYDRIGKNDPIG 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 4e-16
Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 10/97 (10%)
Query: 264 GILHVKVVRASKLLKKD------FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNEN 317
G+L + V+ A L+ KD G SDPYV + + + K+ V K+NLNP+WNE
Sbjct: 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTF---KSKVIKENLNPKWNEV 57
Query: 318 FKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLK 354
++ VV E Q L++++FD D D LG + L
Sbjct: 58 YEAVVDEVPGQELEIELFDED-PDKDDFLGRLSIDLG 93
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 7e-16
Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLV 321
L V ++R L D G SDP+VKL L + K KT VKKK LNPE+NE F
Sbjct: 13 RGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYD 72
Query: 322 VKEPE--SQILQLQVFDWDKVGGHDRLG 347
+K + + L++ V+D D +D +G
Sbjct: 73 IKHSDLAKKTLEITVWDKDIGKSNDYIG 100
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 1e-15
Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
L + + L +D GTSDPYVK G K +K T+ KNLNP W+E F L +++
Sbjct: 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGG-KTVYKSKTI-YKNLNPVWDEKFTLPIEDV 59
Query: 326 ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGK 385
+Q L ++VFD+D+ D +G V L L ++ E L L DP + G
Sbjct: 60 -TQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKL------EDPNSDEDLGY 112
Query: 386 IVVELTYVP 394
I + +T P
Sbjct: 113 ISLVVTLTP 121
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 2e-15
Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 11/130 (8%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
G L VKV+RAS L D G SDP+ L L +L +T K LNPEWN+ F +K
Sbjct: 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARL---QTHTIYKTLNPEWNKIFTFPIK 57
Query: 324 EPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQR 383
+ +L++ V+D DK + LG +PL + E K + LK + +
Sbjct: 58 DIHD-VLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGERKWYA---LKDKKLRTRA----K 109
Query: 384 GKIVVELTYV 393
G I++E+ +
Sbjct: 110 GSILLEMDVI 119
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 4e-15
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 5/130 (3%)
Query: 264 GILHVKVVRASKLLKKD--FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV 321
G+L V VV A L KD G SDPY LS+ ++ KT LNP+WN +
Sbjct: 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRF---KTQTIPNTLNPKWNYWCEFP 57
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMK 381
+ ++Q+L+L ++D D+ G D LG + L+ + + + + K
Sbjct: 58 IFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSV 117
Query: 382 QRGKIVVELT 391
G+I ++ +
Sbjct: 118 VSGEIHLQFS 127
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 2e-14
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNE--NFKLV 321
L V V++A L D G SDPYVK+SL G+KL KKT+VKK LNP +NE +F +
Sbjct: 16 LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVP 75
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLG 347
++ E L + V D D VG ++ +G
Sbjct: 76 AEQLEEVSLVITVVDKDSVGRNEVIG 101
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 4e-14
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 9/108 (8%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLV 321
+ V +++A L D GTSDPYVK+ L +++ KKT +KK+ LNP +NE+F
Sbjct: 15 NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN 74
Query: 322 VKEPESQI----LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFT 365
+ P ++ L + V D D++ +D +G + K E K +
Sbjct: 75 I--PLERLRETTLIITVMDKDRLSRNDLIGKIYLGWK-SGGLELKHWK 119
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 4e-14
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 268 VKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPES 327
V VVRA L KD G SDPY+K+ L +K+ + + LNP + + F+L P +
Sbjct: 4 VYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPN-TLNPVFGKMFELEATLPGN 62
Query: 328 QILQLQVFDWDKVGGHDRLG 347
IL++ V D+D +G D +G
Sbjct: 63 SILKISVMDYDLLGSDDLIG 82
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 1e-13
Identities = 40/116 (34%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Query: 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKL 320
+ G L + + L D G SDP+VKL L + + KT V KK LNP WNE F +
Sbjct: 1037 ENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSV--YKTKVVKKTLNPVWNEEFTI 1094
Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISD 376
V +L + V DWD +D LG + L L P T + L T I
Sbjct: 1095 EVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVL 1150
|
Length = 1227 |
| >gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 2e-13
Identities = 39/106 (36%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL---TGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
L V+V+RA+ + K D L T D YV+L L + EK K+T K ++NP WNE F+ +
Sbjct: 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEK---KRTKTIKNSINPVWNETFEFRI 58
Query: 323 KEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368
+ +L+L V D D V D LG L + L E T L
Sbjct: 59 QSQVKNVLELTVMDEDYV-MDDHLGTVLFDVSKLKLGEKVRVTFSL 103
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119 |
| >gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 2e-13
Identities = 39/125 (31%), Positives = 55/125 (44%), Gaps = 30/125 (24%)
Query: 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKL-----------------------SLTGE 296
+ P+ +L V V+ A LL KD G SDPY L ++ +
Sbjct: 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKD 83
Query: 297 KLP---WKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPL 353
+P K T VK + LNP WNE F+ V++ + L L ++D D D LG +PL
Sbjct: 84 TVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHDD----DFLGCVNIPL 139
Query: 354 KLLTP 358
K L
Sbjct: 140 KDLPS 144
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 2e-13
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
L V+V A L+ D G SDPYVKL L + +KT KK LNP WNE F +K
Sbjct: 15 LTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLK 74
Query: 324 -EPESQILQLQVFDWDKVGGHDRLG 347
+ + L ++V+DWD+ +D +G
Sbjct: 75 PADKDRRLSIEVWDWDRTTRNDFMG 99
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 3e-13
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE 324
++ + +V L D G SDPYVK L EK K+ V K LNP+W E F L + +
Sbjct: 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEK---YKSKVCSKTLNPQWLEQFDLHLFD 57
Query: 325 PESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368
+SQIL+++V+D D + +G + L L +T L+L
Sbjct: 58 DQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELEL 101
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 3e-13
Identities = 36/112 (32%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 256 SVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWN 315
S+ K +GIL+VK+++A L +DF GT+DPY K+ L ++ K++ + KK LNPE++
Sbjct: 8 SLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFD 67
Query: 316 ENFKLVVKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFT 365
E+F V E + L++ ++D+D+ + +G+ +PL + E +
Sbjct: 68 ESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLW 119
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 7e-13
Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 15/127 (11%)
Query: 268 VKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPES 327
+++VRA L G SDPYV L T K KT LNP W+E F+L V E
Sbjct: 5 IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEP 64
Query: 328 QILQLQVFDWDKVGGHDRLG---MQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRG 384
+ V+D VG HD G ++L P + +E LDL D + G
Sbjct: 65 LWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDL-------DTQ-----G 112
Query: 385 KIVVELT 391
++++ ++
Sbjct: 113 RLLLRVS 119
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 7e-13
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 271 VRASKLLKKDFLGTSDPYVKLSLTGEKLPWK---KTTVKKKNLNPEWNENFKLVV----- 322
KL KKDF G SDP++++S E W +T V K LNP W F + +
Sbjct: 7 FSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWKP-FTIPLQKLCN 65
Query: 323 KEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTL 366
+ + I +++V+D+D G HD +G L L EF L
Sbjct: 66 GDYDRPI-KIEVYDYDSSGKHDLIGEFETTLDELLKSSPLEFEL 108
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110 |
| >gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 7e-13
Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNEN--FK 319
G L + +++A L D G SDPYVK+SL G +L KKT+VKK LNP +NE F
Sbjct: 14 GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFD 73
Query: 320 LVVKEPESQILQLQVFDWDKVGGHDRLGM 348
+ + ++ L + V D+D+VG ++ +G+
Sbjct: 74 VPPENVDNVSLIIAVVDYDRVGHNELIGV 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 3e-12
Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
+ + V+ A L K+D DP+ +++ G + T V KK L+P+WNE+F L V
Sbjct: 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQT--HSTDVAKKTLDPKWNEHFDLTVG-- 57
Query: 326 ESQILQLQVFDWDKVGGHDR--LGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQR 383
S I+ +QVFD K D+ LG + + P + + L+ SD ++ R
Sbjct: 58 PSSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSD--NLSVR 115
Query: 384 GKIVVEL 390
GKIVV L
Sbjct: 116 GKIVVSL 122
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123 |
| >gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 7e-12
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 264 GILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEKLPW--KKTTVKKKNLNPEWNENFKL 320
G L V + L D S+PYVK+ L +K +KT+VKK NP +NE K
Sbjct: 14 GSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKY 73
Query: 321 VVKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPLK--LLTPHETKEFTL 366
+ + + ++ LQL V+ D+ G + LG +PL L +++ + L
Sbjct: 74 HISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-11
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 17/107 (15%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTG-EKLPWKKTTVKKKNLNPEWNENF------ 318
L V+V+ L K GT DP+ +++L K K+T VKKK NP ++E F
Sbjct: 1 LSVRVLECRDLALKSN-GTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59
Query: 319 ---------KLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLL 356
K+ ++ E L+++++ V G D LG +PL+ L
Sbjct: 60 GFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGL 106
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 3e-11
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 266 LHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE 324
L V +++A L + + DP+VK+ L ++ ++ VK+K NP ++E F V
Sbjct: 16 LTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSF 75
Query: 325 PESQ--ILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370
E Q L+L V+D D+ H +G L PLK L + DL
Sbjct: 76 KELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 4e-11
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENF--KLV 321
L V V++A L K D G +DPYVK++L +++ KKT VKK LNP +NE+F +
Sbjct: 17 LTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIP 76
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLG 347
+E E ++ V D D+V ++ +G
Sbjct: 77 SEELEDISVEFLVLDSDRVTKNEVIG 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 1e-10
Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 265 ILHVKVVRASKL--LKKDFLGTSDPYVKLSLTGEKLPWK---KTTVKKKN-LNPEWNENF 318
L +K++ +L K D DPYV++ + G KT V K N NP WNE F
Sbjct: 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETF 62
Query: 319 KLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLL 356
+ V PE L+ V+D D G D LG +PL L
Sbjct: 63 EFDVTVPELAFLRFVVYDEDS-GDDDFLGQACLPLDSL 99
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128 |
| >gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 1e-10
Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 264 GILHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
G+L V + RA+ L K DF G+SDPYV S P T + +K+LNP W E + ++V
Sbjct: 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLV 60
Query: 323 KEPESQI---LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETK 362
E + L +++D D+ DRLG + LK L
Sbjct: 61 TPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELIEDRNW 103
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111 |
| >gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 2e-10
Identities = 38/127 (29%), Positives = 54/127 (42%), Gaps = 13/127 (10%)
Query: 270 VVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ES 327
VV L G D K++ G K KKT V + LNP WNE F+ +
Sbjct: 2 VVSLKNLPGL--KGKGDRIAKVTFRGVK---KKTRVLENELNPVWNETFEWPLAGSPDPD 56
Query: 328 QILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIV 387
+ L++ V D++KVG + +G V L+ L E T LL D I
Sbjct: 57 ESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEVTEPLL------DSNGRPTGATIS 110
Query: 388 VELTYVP 394
+E++Y P
Sbjct: 111 LEVSYQP 117
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 3e-10
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV 321
P + V V A L K+D G +DPYV + GE + ++ V+K L+PE++
Sbjct: 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESV---RSPVQKDTLSPEFDTQAIFY 57
Query: 322 VKEPESQILQLQVFDWDK 339
K+P S I +QV W+
Sbjct: 58 RKKPRSPIK-IQV--WNS 72
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 3e-10
Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
L V V + L D DPYV+L L K +KT+VKK NLNP ++E F+ V
Sbjct: 18 LIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVS 77
Query: 324 EPESQILQLQVFDWDKVGGHDR----LGMQLVPLK--LLTPHETKEFTL 366
E + L V + R LG L+ L L+ T+ + L
Sbjct: 78 LEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 3e-10
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 18/104 (17%)
Query: 265 ILHVKVVRA-------SKLLKKDFLGTS-------DPYVKLSLTGEKLPWKKTTVKKKNL 310
K+ RA S ++ DPYV++S G+K+ KT+VKK +
Sbjct: 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKV---KTSVKKNSY 57
Query: 311 NPEWNENFKLVVKEPE-SQILQLQVFDWDKVGGHDRLGMQLVPL 353
NPEWNE P + +++Q+ DWD+VG D +G + L
Sbjct: 58 NPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDL 101
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151 |
| >gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 5e-10
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
L + V A KL DPYV++++ G+ P KKT V KK NP+WNE+F ++V
Sbjct: 4 LQITVESA-KLKSNSKSFKPDPYVEVTVDGQ--PPKKTEVSKKTSNPKWNEHFTVLVT-- 58
Query: 326 ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH-----ETKEFTLDLL 369
L+ +V+ + LG + L + + E + TL+L
Sbjct: 59 PQSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLS 107
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 5e-10
Identities = 44/132 (33%), Positives = 62/132 (46%), Gaps = 20/132 (15%)
Query: 267 HVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNE--NFKL---V 321
V V++A LL K GT+D YV + L EK T+VK+K +P W E +F+L +
Sbjct: 2 QVTVLQARGLLCKGKSGTNDAYVIIQLGKEKY---STSVKEKTTSPVWKEECSFELPGLL 58
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKE----FTLDLLKHTNISDP 377
LQL V + +G LG +PL L + + F L+ S P
Sbjct: 59 SGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLE-------SKP 111
Query: 378 -KDMKQRGKIVV 388
KD K+RG+I V
Sbjct: 112 GKDDKERGEIEV 123
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 5e-10
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL----TGEKLPWKKTTVKKKNLNPEWNENFKLV 321
L V+++ A LL D G+SDP+VK+ L +P KT VKKK L P ++E+F+
Sbjct: 18 LRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFN 77
Query: 322 V----KEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLL 356
V E +L V D+D +G +D G +PL +
Sbjct: 78 VPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDI 116
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 6e-10
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
L V+VV A L+ KD G+S YV+L G+K K+T K K+LNP WNE V +P
Sbjct: 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQK---KRTRTKPKDLNPVWNEKLVFNVSDP 58
Query: 326 E---SQILQLQVFD 336
+ +L++ V++
Sbjct: 59 SRLSNLVLEVYVYN 72
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 6e-10
Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVV 322
G L V ++ A L DFLG DPYV + ++ +K+ V K NPEWNE FK V
Sbjct: 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQE---RKSKVAKGDGRNPEWNEKFKFTV 57
Query: 323 KEPESQI---LQLQVFDWDKVGGHDRLGMQLVPLK 354
+ P L L++ D D D +G + LK
Sbjct: 58 EYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLK 92
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 2e-09
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Query: 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE 324
+L V + A L PYV+L++ +K+ VK++ NP W E F +V+
Sbjct: 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTT---QKSKVKERTNNPVWEEGFTFLVRN 57
Query: 325 PESQILQLQVFDWDKVGGHDRLGMQLVPLK--LLTPHETKE--FTLD 367
PE+Q L+++V D LG +PL L P T + F LD
Sbjct: 58 PENQELEIEVKDDKTGK---SLGSLTLPLSELLKEPDLTLDQPFPLD 101
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 2e-09
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 263 VGILHVKVVRASKLLKKDFLGTS-DPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV 321
+G+L V + A L D +G + DPYV S++ + +T VKK NP WNE ++
Sbjct: 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRREL-ARTKVKKDTSNPVWNETKYIL 59
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLGMQLVPL-KLLTPHETKEFTLDLLKHTNISDPKDM 380
V ++ L L V+D++ +G L LL E + T +LL++
Sbjct: 60 VNS-LTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNG-------- 110
Query: 381 KQRGKIVVELTYVP 394
K G++ +L + P
Sbjct: 111 KPVGELNYDLRFFP 124
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 4e-09
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
G+L + + +A+ L + +G DPYV++ + G +T LNP W+E + V
Sbjct: 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVK--GRTVTISNTLNPVWDEVLYVPVT 58
Query: 324 EPESQILQLQVFDWDKVGGHDR-LG 347
P +Q + L+V D++KV G DR LG
Sbjct: 59 SP-NQKITLEVMDYEKV-GKDRSLG 81
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 1e-08
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL-TGEKL-PWKKTTVKKKNLNPEWNENFKLV 321
G L+V ++RA +LL+ D SDP+VK+ L G KL KKT+ + ++P +NE+F
Sbjct: 14 GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFK 73
Query: 322 VKEPESQILQLQVFDWD 338
V + E + + L +
Sbjct: 74 VPQEELENVSLVFTVYG 90
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135 |
| >gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-08
Identities = 41/97 (42%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWK------KTTVKKKNLNPE 313
K G LHV V A L GTSD +VK L LP K KT V KK++NP
Sbjct: 23 KPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYL----LPDKSKKSKQKTPVVKKSVNPV 78
Query: 314 WNENF--KLVVKEPESQI-LQLQVFDWDKVGGHDRLG 347
WN F V E SQ L+L V+D DK+ +D LG
Sbjct: 79 WNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLG 115
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 8e-08
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
+ + VV A L+ KD GTSDPYV + + K K+T +NLNP WNE F
Sbjct: 3 ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTK---KRTKTIPQNLNPVWNEKFHFECHNS 59
Query: 326 ESQILQLQVFDWD 338
+I +++V+D D
Sbjct: 60 SDRI-KVRVWDED 71
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 8e-08
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 266 LHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVV 322
LHV V++ L D SDPYVK L +K +KT+VKKK LNP +NE + V
Sbjct: 17 LHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKV 76
Query: 323 KEPE--SQILQLQVFDWDKVGGHDRLGMQLVPL 353
+ E +++L L V+ D +G + LG V L
Sbjct: 77 EREELPTRVLNLSVWHRDSLGRNSFLGEVEVDL 109
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-07
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
+G L V +V L + G SDPY ++S+ ++ KT V LNP+WN + + V
Sbjct: 14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQE---HKTKVVSDTLNPKWNSSMQFFV 70
Query: 323 KEPESQILQLQVFDWDKVGGHDRLG 347
K+ E +L + VFD D D LG
Sbjct: 71 KDLEQDVLCITVFDRDFFSPDDFLG 95
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 5e-07
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 264 GILHVKVVRASKLLK-KDFLGTS---DPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFK 319
G++ +++ + L K+ T DP+V +S G ++ +T+ ++ LNP +NE
Sbjct: 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISF-GRRV--FRTSWRRHTLNPVFNERLA 57
Query: 320 LVVKEPESQI-LQLQVFDWDKVGGHDRLG 347
V E +Q +V D DK +D +
Sbjct: 58 FEVYPHEKNFDIQFKVLDKDKFSFNDYVA 86
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108 |
| >gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 5e-07
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 267 HVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE 326
V+V+ A +L+ G DP VK+ + G+K K T+VKK P +NE F E
Sbjct: 7 RVRVIEARQLVG----GNIDPVVKVEVGGQK---KYTSVKKGTNCPFYNEYFFFNFHESP 59
Query: 327 S----QILQLQVFDWDKVGGHDRLG 347
+I+++ V+D + +G
Sbjct: 60 DELFDKIIKISVYDSRSLRSDTLIG 84
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 5e-07
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 13/99 (13%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVK------KKNLNPEWNEN 317
L V V++A L +D +PYVK+ L LP + K KK LNPEWN+
Sbjct: 16 SQLIVTVLQARDLPPRDDGSLRNPYVKVYL----LPDRSEKSKRRTKTVKKTLNPEWNQT 71
Query: 318 FKL-VVKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPL 353
F+ V+ + L++ V+D+D+ G +D LG ++ L
Sbjct: 72 FEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDL 110
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-06
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 10/130 (7%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWK-KTTVKKKNLNPEWNENFKLVVKE 324
L VK ++A + G+S+PY L + ++ P K +++ +K NP W+E+F +
Sbjct: 1 LLVKNIKA--NGLSEAAGSSNPYCVLEM--DEPPQKYQSSTQKNTSNPFWDEHFLFELS- 55
Query: 325 PESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRG 384
P S+ L +V+D K LG+ +VP L + + L D G
Sbjct: 56 PNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSV----SG 111
Query: 385 KIVVELTYVP 394
I VE ++
Sbjct: 112 SITVEFLFME 121
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176038 cd08392, C2A_SLP-3, C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-06
Identities = 29/71 (40%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 287 PYVKLSLTGEKLPW--KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344
PYVK+ L +K +KT VKK +NP +NE K VV+ QLQV W
Sbjct: 39 PYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKR 98
Query: 345 R--LGMQLVPL 353
R LG L+PL
Sbjct: 99 RVFLGEVLIPL 109
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-06
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNLNPEWNENF 318
L V+V+ S L K+ GT DPY ++L +K K+T VKKK NP+++E F
Sbjct: 2 LSVRVIECSDLALKN--GTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAF 54
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148 |
| >gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 5e-06
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 285 SDPYVKLSLTGEKLPW--KKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKV 340
S+PYVK L +K +KT++K+ NP +NE K + E++ LQL V+ +D+
Sbjct: 37 SNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRF 96
Query: 341 GGHDRLGMQLVPL 353
G + LG +PL
Sbjct: 97 GRNTFLGEVEIPL 109
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|176051 cd08406, C2B_Synaptotagmin-12, C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 5e-06
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
L V VV+A L+ + T+DP+VK+ L G K+ KKT+VK+ + NP +NE V
Sbjct: 17 LTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVP 76
Query: 324 EPESQILQLQV 334
Q L L+V
Sbjct: 77 AIVLQDLSLRV 87
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-05
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 250 PILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKN 309
P ++++ ++ + L V V+RA+ L D+ ++D YVK+ G++ K+T V N
Sbjct: 14 PNVNSNCCPTRRGLATLTVTVLRATGL-WGDYFTSTDGYVKVFFGGQE---KRTEVIWNN 69
Query: 310 LNPEWNENFKL-VVKEPESQILQLQVFDWDKVGGHDRLG 347
NP WN F V+ L+ +V+D D D LG
Sbjct: 70 NNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLLG 108
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127 |
| >gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-05
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 302 KTTVKKKNLNPEWN-ENFKLVVKEPESQ--ILQLQVFDWDKVGGHDRLGMQLVPLKLL 356
KT V KK+LNP WN E F+ V + E Q LQ++V D D +D +G + L L
Sbjct: 35 KTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPL 92
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 4e-05
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKT-TVKKKNLNPEWNENFKLVV 322
G L V V++A L K L DPY L + G KKT T + +PEW+E + +
Sbjct: 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVT---KKTKTDFRGGQHPEWDEELRFEI 57
Query: 323 KEPESQILQLQVFDWDK 339
E + IL++ VFD DK
Sbjct: 58 TEDKKPILKVAVFDDDK 74
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|176054 cd08409, C2B_Synaptotagmin-15, C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 6e-05
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNE--NFKLV 321
L V V+RA L + D T YVK+SL + + KKT V +P +NE +FK+
Sbjct: 17 LTVVVLRARGLRQLDHAHT-SVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVT 75
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLG 347
++ ++ L L V V LG
Sbjct: 76 SRQLDTASLSLSVMQSGGVRKSKLLG 101
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 137 |
| >gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 1e-04
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 283 GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342
G PY +L L G+ + T VKKK NP WN + + +V + + + V D D+
Sbjct: 11 GLLSPYAELYLNGKLV--YTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKD-DRDRH 67
Query: 343 HDRLGMQLVPL 353
LG + L
Sbjct: 68 DPVLGSVSISL 78
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 2e-04
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 271 VRASKLLKKDFLGTSDPYVKLSL-TGEKLPWKK---TTVKKKNLNPEWNENFKLVVKEPE 326
+ LL KD L SDP+V + + TG W + T V K NLNP++ F + E
Sbjct: 7 ISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE 66
Query: 327 SQILQLQVFDWD----KVGGHDRLG 347
Q L+ +V+D D + HD LG
Sbjct: 67 VQKLRFEVYDVDSKSKDLSDHDFLG 91
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120 |
| >gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 2e-04
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
L++++V L KD G+SDPY + + E +T K LNP W E + + + P
Sbjct: 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNE--VIIRTATVWKTLNPFWGEEYTVHLP-P 58
Query: 326 ESQILQLQVFDWDKVGGHDRLG 347
+ V D D + D +G
Sbjct: 59 GFHTVSFYVLDEDTLSRDDVIG 80
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
L V V+ A L+ D + +VK L + L + + +N NP WNE V EP
Sbjct: 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVL--RTRPSQTRNGNPSWNEELMFVAAEP 59
Query: 326 ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTP 358
L L V D + LG ++PL +
Sbjct: 60 FEDHLILSVEDRVGPNKDEPLGRAVIPLNDIER 92
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 3e-04
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 286 DPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENF---KLVVKEPESQILQLQVFDWDKV 340
DPYVK L + K +KT V +K NP +NE L V++ + ++LQ+ V+ D +
Sbjct: 34 DPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSL 93
Query: 341 GGHDRLGMQLVPLK--LLTPHETKEFTL 366
++ LG +PLK L+ K + L
Sbjct: 94 VENEFLGGVCIPLKKLDLSQETEKWYPL 121
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122 |
| >gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 4e-04
Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 266 LHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENF 318
L V ++ L D GTSDPYVKL L EK KT V +K NP ++E F
Sbjct: 18 LLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETF 71
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 7e-04
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 254 ASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPE 313
+S P+G + V V +A+ L + G SDPY + + +T LNP
Sbjct: 701 SSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNLVK--YRTIYGSSTLNPI 758
Query: 314 WNENFKLVVKEPESQILQLQVFDWDKVG 341
WNE + V +Q L L+ D+++ G
Sbjct: 759 WNEILYVPVTSK-NQRLTLECMDYEESG 785
|
Length = 1227 |
| >gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.002
Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 15/129 (11%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVV--K 323
L ++++ A L K GT DPY +SL ++ +T +K LNP W E F
Sbjct: 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEV--ARTKTVEK-LNPFWGEEFVFDDPPP 55
Query: 324 EPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQR 383
+ L D +G V L L + K+ L D + +
Sbjct: 56 DVTFFTLSFYNKDKRSKDRDIVIG--KVALSKLDLGQGKDEWFPLTPVDP-----DSEVQ 108
Query: 384 GKIVVELTY 392
G + + Y
Sbjct: 109 GSVRLRARY 117
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117 |
| >gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.003
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
L+V+VV+A L ++DP V++ L K K + NPEWN+ F
Sbjct: 2 LYVRVVKARGLP----ANSNDPVVEVKLGNYKGSTKAIE---RTSNPEWNQVFAFSKDRL 54
Query: 326 ESQILQLQVFDWDKVGGHD 344
+ L++ V WDK D
Sbjct: 55 QGSTLEVSV--WDKDKAKD 71
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.004
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 265 ILHVKVVRASKLL---KKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV 321
IL V ++ A L KD G++D Y ++ G K W +T + + NP WNE +
Sbjct: 1 ILEVGILGAQGLDVLRAKDGRGSTDAYC-VAKYGPK--WVRTRTVEDSSNPRWNEQYTWP 57
Query: 322 VKEPESQILQLQVFD 336
V +P +L + VFD
Sbjct: 58 VYDP-CTVLTVGVFD 71
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 477 | |||
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 100.0 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.95 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.88 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.85 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.85 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.85 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.85 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.84 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.84 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.84 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.83 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.83 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.82 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.82 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.82 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.81 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.81 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.81 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.81 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.81 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.81 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.81 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.81 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.8 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.8 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.8 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.79 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.79 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.79 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.78 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.78 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.78 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.78 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.78 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.78 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.78 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.77 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.77 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.77 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.76 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.76 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.76 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.76 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.76 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.76 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.76 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.75 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.75 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.75 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.75 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.74 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.74 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.73 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.73 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.73 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.72 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.72 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.72 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.71 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.71 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.71 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.71 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.71 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.7 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.7 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.7 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.69 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.69 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.69 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.69 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.68 | |
| PLN03008 | 868 | Phospholipase D delta | 99.68 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.68 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.67 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.67 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.67 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.67 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.67 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.66 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.66 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.65 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.65 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.65 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.65 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.65 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.65 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.64 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.64 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.63 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.63 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.62 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.6 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.6 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.59 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.59 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.58 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.54 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.51 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.5 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.5 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.39 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.36 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.35 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.33 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.29 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.25 | |
| PF10296 | 91 | DUF2404: Putative integral membrane protein conser | 99.2 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.2 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.19 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.16 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.15 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.14 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.11 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.11 | |
| PLN02270 | 808 | phospholipase D alpha | 99.1 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.1 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 99.09 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.09 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.07 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.06 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.03 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.03 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.02 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 99.02 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.01 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.0 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 98.99 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 98.98 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.97 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 98.96 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 98.95 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 98.95 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 98.94 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 98.94 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 98.92 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.91 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 98.9 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.9 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.89 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 98.89 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.89 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 98.89 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.87 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 98.85 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 98.84 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 98.84 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 98.83 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 98.82 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 98.82 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 98.81 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 98.81 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 98.81 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 98.8 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 98.77 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 98.73 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 98.73 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 98.72 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 98.71 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 98.71 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.71 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 98.7 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.69 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 98.68 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 98.68 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 98.66 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 98.65 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 98.64 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 98.64 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 98.62 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 98.61 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 98.61 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 98.61 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 98.59 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 98.59 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 98.58 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 98.58 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.57 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 98.55 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 98.54 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 98.5 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 98.49 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 98.49 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 98.49 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 98.48 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 98.48 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 98.47 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 98.45 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.45 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 98.45 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 98.44 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 98.44 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 98.44 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 98.35 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 98.35 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 98.34 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 98.33 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 98.33 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 98.29 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 98.27 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 98.24 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 98.23 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 98.21 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 98.19 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 98.18 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 98.16 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 98.15 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 98.13 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 98.09 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.04 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 98.03 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 98.01 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 97.91 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 97.89 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.89 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 97.89 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 97.85 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.82 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 97.76 | |
| KOG3532 | 1051 | consensus Predicted protein kinase [General functi | 97.72 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 97.67 | |
| PLN03008 | 868 | Phospholipase D delta | 97.63 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 97.61 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.59 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 97.59 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 97.58 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 97.45 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 97.42 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 97.38 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 97.3 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 97.25 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 97.23 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 96.95 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 96.86 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 96.53 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 96.45 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 96.21 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 95.58 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 95.44 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 95.43 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 95.39 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 95.37 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 94.67 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 94.65 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 94.34 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 94.02 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 93.92 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 93.74 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 93.5 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 93.23 | |
| PF15625 | 168 | CC2D2AN-C2: CC2D2A N-terminal C2 domain | 93.19 | |
| cd08695 | 189 | C2_Dock-B C2 domains found in Dedicator Of CytoKin | 93.04 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 92.87 | |
| cd08694 | 196 | C2_Dock-A C2 domains found in Dedicator Of CytoKin | 91.11 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 90.22 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 89.89 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 88.9 | |
| cd08679 | 178 | C2_DOCK180_related C2 domains found in Dedicator O | 84.9 | |
| cd08697 | 185 | C2_Dock-D C2 domains found in Dedicator Of CytoKin | 84.36 | |
| PLN02270 | 808 | phospholipase D alpha | 82.16 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 81.86 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 81.17 |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-62 Score=520.28 Aligned_cols=433 Identities=28% Similarity=0.508 Sum_probs=358.5
Q ss_pred cchhhhhhhhcccccchhHHHHHHHhheee-eccCCcccccccccccccCCchhHhhhCCCCCCceeCCCCcchHHHHHH
Q 011813 2 GFLSSVLGVLGFGFIGLPLGLLVGFFLFIY-SKPNDDQVEEPLVTPLCELDTIPLFDLLPEIPLWVKNPDYERVDWLNRF 80 (477)
Q Consensus 2 ~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~~~d~E~~~WlN~~ 80 (477)
|++||++|++||+++-+++.++.++++|.- .++.+|..|+...+.+.+ +++ ..|+|++||||.+
T Consensus 165 ~v~Swifg~~~fs~~slffii~~~~~vY~~~~~rv~rnird~v~~~~~~------ek~---------~nd~ESveWLNtf 229 (1227)
T COG5038 165 SVASWIFGYLGFSFASLFFIILVTMYVYRTCIKRVRRNIRDLVQQELSE------EKL---------ENDYESVEWLNTF 229 (1227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------Hhh---------hcchhHHHHHHHH
Confidence 689999999999966666544444333221 013333334444443322 222 2799999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeEEEeEeeCCCCCCeEeeEEEEec-CCCeEEEEeeeeeec------
Q 011813 81 LSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFENLTLGTLPPTIYGIRVYET-NENQLVMEPALRWAG------ 153 (477)
Q Consensus 81 l~~~Wp~~~~~~~~~i~~~~~~~l~~~~p~~~i~~i~~~~~~lG~~~P~i~~ir~~~~-~~~~~~le~~~~~~~------ 153 (477)
|+++||.+++.+++.|.+.+++.|.++.|+| |+.+.+.+||||++||||.+||.|+. ..+.+.||+++++..
T Consensus 230 L~KfW~i~eP~iSqqV~dqvn~~la~~iPsF-I~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~~sftP~d~sD~ 308 (1227)
T COG5038 230 LQKFWPIIEPSISQQVVDQVNQQLAEAIPSF-IDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDISDV 308 (1227)
T ss_pred HHhheeccChHHHHHHHHHHHHHHHhhcchh-hhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEeeeccCccchhhh
Confidence 9999999999999999999999999999999 99999999999999999999999996 457889999999952
Q ss_pred ---------CCcEEEEEEE---ee-eEEEEEEEEEEEEEEEEEEEeecCCCCCceeEEEEEcCCCceEEEEEEEeC----
Q 011813 154 ---------NPNIVLVLKL---LS-FRITVQLVDLQIFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILG---- 216 (477)
Q Consensus 154 ---------~~~i~l~~~~---~~-~~~~v~v~~l~~~g~~rv~l~pl~~~~P~~~~~~~sf~~~P~id~~~~~~g---- 216 (477)
+++|.|.++. ++ +++||.|+|+.|.|++||+++ |++.+|++..+.++|++.|.+||.++|+|
T Consensus 309 t~~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~-L~~~~PfiktV~~~Lle~Pe~df~l~Plg~~~~ 387 (1227)
T COG5038 309 TATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLGGDFF 387 (1227)
T ss_pred hhHHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEE-ecCCCcceeEEEEEEecCcceeEEEEEcCCCcc
Confidence 4668888866 44 789999999999999999999 99999999999999999999999999986
Q ss_pred -cccccccchhHHHHHHHHHhhhccccCCceeeeecCCcccccccCCceEEEEEEEEcccccccc--ccCCCCcEEEEEE
Q 011813 217 -GDIMSIPGLYQFIQKCITKYVAGIYIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKD--FLGTSDPYVKLSL 293 (477)
Q Consensus 217 -~~~~~iP~l~~~i~~~i~~~i~~~~v~P~~~~i~i~~~~~~~~~~~~G~L~V~v~~A~~L~~~d--~~g~~dpyv~v~l 293 (477)
.||+.+|||.+||+++|..++++|+++|+.+++++.+...+....+.|+|.|+|.+|++|...+ ..+..|||+.+..
T Consensus 388 g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~ 467 (1227)
T COG5038 388 GVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTF 467 (1227)
T ss_pred ceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccccCCeeEEEEEEEeeccCcccccccccCCCCceEEEEe
Confidence 5799999999999999999999999999999999988766558899999999999999999988 6799999999997
Q ss_pred cCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCeeEEEEEECcccCCCCceE-EEEeccccc
Q 011813 294 TGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKE-FTLDLLKHT 372 (477)
Q Consensus 294 ~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~-~~~~l~~~~ 372 (477)
.+... .||++++++.||+|||+|++.+.. .++.|.++|||.+....|+.+|++.++|..+..+.... ....+..
T Consensus 468 ~~r~~--gkT~v~~nt~nPvwNEt~Yi~lns-~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~-- 542 (1227)
T COG5038 468 SDRVI--GKTRVKKNTLNPVWNETFYILLNS-FTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLR-- 542 (1227)
T ss_pred ccccC--CccceeeccCCccccceEEEEecc-cCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeeec--
Confidence 64433 489999999999999999999975 46799999999999999999999999999988665433 2334332
Q ss_pred CCCCCCCCccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccc-cCcceEEEEEEeeeecCCCC-C-CCCc
Q 011813 373 NISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEA-LSGAGLLSVLVQGAEDVEGE-N-HNNP 449 (477)
Q Consensus 373 ~~~~~~~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~L~V~V~~A~~L~~~-~-~~DP 449 (477)
+.+..|+|+.+++|+|..++.....+.. ++. ...+|++.++++++++|... + ...-
T Consensus 543 ------~~k~vGrL~yDl~ffp~~e~k~~~~~s~---------------e~~ed~n~GI~k~tl~~~~~l~~~~~~~~~~ 601 (1227)
T COG5038 543 ------NTKNVGRLTYDLRFFPVIEDKKELKGSV---------------EPLEDSNTGILKVTLREVKALDELSSKKDNK 601 (1227)
T ss_pred ------cCccceEEEEeeeeecccCCcccccccc---------------CCcccCCcceeEEEeeccccccCccccccce
Confidence 4788999999999999887754433221 111 22579999999999999873 2 3344
Q ss_pred EEEEEEcCeEeee-eeeeeccCccceecC
Q 011813 450 YAIILYKGDKKRT-KVSFLSLLYTYSLQL 477 (477)
Q Consensus 450 yvkv~l~~~~~kT-kv~~~t~~P~~~~~~ 477 (477)
|++++.+++...| ++.+++.+|.||+|.
T Consensus 602 ~a~l~~~~keV~st~~~k~t~~~~wn~~~ 630 (1227)
T COG5038 602 SAELYTNAKEVYSTGKLKFTNHPSWNLQY 630 (1227)
T ss_pred eEEEEecceEEeccceeeeccCCceeeec
Confidence 4999999988855 889999999999873
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9e-27 Score=237.43 Aligned_cols=182 Identities=34% Similarity=0.489 Sum_probs=158.9
Q ss_pred cccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEee--cCCCCeEEEEEE
Q 011813 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK--EPESQILQLQVF 335 (477)
Q Consensus 258 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~ 335 (477)
..+.....|.|+|++|++|+..|..|.+||||++++.+++..+.+|++.++|+||.|||+|.|.+. +.....|.+.||
T Consensus 161 ~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~ 240 (421)
T KOG1028|consen 161 QYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVY 240 (421)
T ss_pred EecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEE
Confidence 356677899999999999999997788999999999999888899999999999999999999965 245789999999
Q ss_pred ecCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEecccCcccccccccccccCCCC
Q 011813 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSG 415 (477)
Q Consensus 336 d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~ 415 (477)
|+|++++|++||++.++|..+.......+|.++....... ....|+|.++++|.|
T Consensus 241 ~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~----~~~~gel~~sL~Y~p--------------------- 295 (421)
T KOG1028|consen 241 DFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDS----EELAGELLLSLCYLP--------------------- 295 (421)
T ss_pred ecCCcccccEEEEEEecCccccccccceeeeccccccCCc----ccccceEEEEEEeec---------------------
Confidence 9999999999999999999998887788899887653332 222389999999998
Q ss_pred CCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC-----eEeeeeeeeeccCcccee
Q 011813 416 NDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-----DKKRTKVSFLSLLYTYSL 475 (477)
Q Consensus 416 ~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~-----~~~kTkv~~~t~~P~~~~ 475 (477)
..|+|+|.|.+|+||.. .+.+|||||+++.. +++||.++++++||.||.
T Consensus 296 -----------~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~ne 352 (421)
T KOG1028|consen 296 -----------TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNE 352 (421)
T ss_pred -----------CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccc
Confidence 68999999999999985 56899999999843 455899999999999984
|
|
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.6e-22 Score=167.85 Aligned_cols=119 Identities=21% Similarity=0.338 Sum_probs=101.9
Q ss_pred ceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCC-CCCCeeeeEEEEEeecCCCCeEEEEEEecCCCC
Q 011813 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKK-NLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~ 341 (477)
.|.|+|+|++|++++..+ .|++||||++.+++++. +|+++.+ +.||+|||+|.|.+.+. ...|.|+|||+|.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~---kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~ 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVY---ETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFT 75 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEE---EeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCc
Confidence 489999999999998777 79999999999987653 8998865 89999999999999753 468999999999999
Q ss_pred CCCeeEEEEEECc-ccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 011813 342 GHDRLGMQLVPLK-LLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (477)
Q Consensus 342 ~d~~lG~~~v~L~-~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (477)
+|++||++.+++. .+..++....|++|... .+....|+|+|+++|
T Consensus 76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~------~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 MDERIAWTHITIPESVFNGETLDDWYSLSGK------QGEDKEGMINLVFSY 121 (121)
T ss_pred CCceEEEEEEECchhccCCCCccccEeCcCc------cCCCCceEEEEEEeC
Confidence 9999999999996 57777778889988642 124578999999998
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.1e-21 Score=162.83 Aligned_cols=118 Identities=33% Similarity=0.452 Sum_probs=100.8
Q ss_pred EEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeec-----CCCCeEEEEEEecCCC
Q 011813 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE-----PESQILQLQVFDWDKV 340 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~-----~~~~~L~v~V~d~d~~ 340 (477)
++|+|++|+||+.++..|.+||||++++++++ ++|+++++|.||+|||+|.|.+.. .....|.++|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~---~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEK---YSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCee---eeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 57999999999999988999999999998654 489999999999999999999976 3567899999999999
Q ss_pred CCCCeeEEEEEECcccC--CCCceEEEEecccccCCCCCCCCccceEEEEEE
Q 011813 341 GGHDRLGMQLVPLKLLT--PHETKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (477)
Q Consensus 341 ~~d~~lG~~~v~L~~l~--~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 390 (477)
++|++||++.++|+++. .+.....|++|..... ...+.+|+|++++
T Consensus 78 ~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~----~~~~~~Gei~l~~ 125 (126)
T cd08682 78 GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPG----KDDKERGEIEVDI 125 (126)
T ss_pred CCCceeEEEEEEHHHhhccCCCcccEEEECcCCCC----CCccccceEEEEe
Confidence 89999999999999987 5566778888864211 2356789999987
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-20 Score=158.88 Aligned_cols=120 Identities=33% Similarity=0.513 Sum_probs=106.0
Q ss_pred EEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCe
Q 011813 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~ 345 (477)
|+|+|++|++|+..|..|.+||||++++++.. .++|++++++.||.|||+|.|.+.+. .+.|.|+|||++..++|++
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~--~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~ 78 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKT--VYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDF 78 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEE--EEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcc
Confidence 79999999999999988999999999997632 36899999999999999999998764 5789999999999999999
Q ss_pred eEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 346 LGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 346 lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
||++.++++++..+...+.|++|... .+.+..|+|++.++|.|
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 79 MGSAFVDLSTLELNKPTEVKLKLEDP------NSDEDLGYISLVVTLTP 121 (121)
T ss_pred eEEEEEEHHHcCCCCCeEEEEECCCC------CCccCceEEEEEEEECC
Confidence 99999999999998889999988532 12467899999999976
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=159.98 Aligned_cols=117 Identities=32% Similarity=0.444 Sum_probs=100.8
Q ss_pred eEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeC-CCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCC
Q 011813 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~-~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~ 342 (477)
|.|+|+|++|++|+..+..+.+||||++++++.. ++|+++. ++.||+|||+|.|.+.....+.|.++|||++..+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~---~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~- 76 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVT---KKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK- 76 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCc---cccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-
Confidence 7899999999999999988999999999998743 4788764 5899999999999998766678999999998765
Q ss_pred CCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 011813 343 HDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (477)
Q Consensus 343 d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (477)
|++||++.+++.++..+.....|+++.. +++..|+|+++++|
T Consensus 77 ~~~iG~~~~~l~~~~~~~~~~~w~~L~~--------~~~~~G~i~l~l~f 118 (118)
T cd08681 77 PDLIGDTEVDLSPALKEGEFDDWYELTL--------KGRYAGEVYLELTF 118 (118)
T ss_pred CcceEEEEEecHHHhhcCCCCCcEEecc--------CCcEeeEEEEEEEC
Confidence 8999999999999876666678887753 24688999999987
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.85 E-value=8e-21 Score=158.34 Aligned_cols=106 Identities=21% Similarity=0.234 Sum_probs=90.6
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcC-cccCceeeeeeCCCCCCeeeeEEEEEeec--CCCCeEEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG-EKLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQVF 335 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~-~~~~~~kT~v~~~t~nP~WnE~f~f~v~~--~~~~~L~v~V~ 335 (477)
.....|.|+|+|++|++|+ . .|.+||||++++.+ .+..+++|+++++|+||+|||+|.|.++. .....|.++||
T Consensus 9 Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~ 85 (118)
T cd08677 9 YDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLR 85 (118)
T ss_pred EcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEE
Confidence 4556799999999999998 3 36699999999975 34456799999999999999999999874 34678999999
Q ss_pred ecCCCCCCCeeEEEEEECcccCCCCceEEEEe
Q 011813 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLD 367 (477)
Q Consensus 336 d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~ 367 (477)
|+|+++++++||++.++++++..+...++|.+
T Consensus 86 d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~ 117 (118)
T cd08677 86 CCDRFSRHSTLGELRLKLADVSMMLGAAQWVD 117 (118)
T ss_pred eCCCCCCCceEEEEEEccccccCCccccchhc
Confidence 99999999999999999999876666666654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-20 Score=156.74 Aligned_cols=115 Identities=34% Similarity=0.513 Sum_probs=103.4
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCC
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~ 344 (477)
+++|+|++|++|+..+..+.+||||++++++.. ++|+++++|.||.|||+|.|.+.+...+.|.++|||++..++|+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~ 77 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEK---YKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDE 77 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEe---EecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 479999999999999988999999999997643 58999999999999999999998766789999999999988999
Q ss_pred eeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 011813 345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (477)
Q Consensus 345 ~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (477)
+||++.++|+++..+.....|++|.+ ..|+|++.++|.
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~-----------~~G~~~~~~~~~ 115 (116)
T cd08376 78 FIGRCEIDLSALPREQTHSLELELED-----------GEGSLLLLLTLT 115 (116)
T ss_pred eEEEEEEeHHHCCCCCceEEEEEccC-----------CCcEEEEEEEec
Confidence 99999999999998888999998842 269999999884
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-20 Score=156.60 Aligned_cols=109 Identities=26% Similarity=0.359 Sum_probs=94.0
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEEcC----cccCceeeeeeCCCCCCeeeeEEEEEeecC---CCCeEEEEEEec
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTG----EKLPWKKTTVKKKNLNPEWNENFKLVVKEP---ESQILQLQVFDW 337 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~----~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~---~~~~L~v~V~d~ 337 (477)
.|+|+|++|++|+..+ .|.+||||++++.+ .+.++++|+++++|+||+|||+|.|.+... ....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 4899999999999988 49999999999842 333456899999999999999999999742 346799999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecccccCC
Q 011813 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNI 374 (477)
Q Consensus 338 d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~ 374 (477)
|..++|++||++.++|+++..++....|++|.+.+++
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~~~ 116 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIHM 116 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCcccc
Confidence 9888899999999999999999889999999776554
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.6e-20 Score=160.14 Aligned_cols=121 Identities=30% Similarity=0.436 Sum_probs=103.5
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecC
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWD 338 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d 338 (477)
.....|.|+|+|++|++|+..+..|.+||||+++++... ++|+++++|.||.|||+|.|.+.+...+.|.++|||+|
T Consensus 10 ~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~---~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d 86 (136)
T cd08375 10 RASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQE---HKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRD 86 (136)
T ss_pred CCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEe---eeccccCCCCCCccCceEEEEecCccCCEEEEEEEECC
Confidence 456789999999999999999988999999999997654 58999999999999999999998776788999999999
Q ss_pred CCCCCCeeEEEEEECcccCCC-----CceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 011813 339 KVGGHDRLGMQLVPLKLLTPH-----ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (477)
Q Consensus 339 ~~~~d~~lG~~~v~L~~l~~~-----~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (477)
..++|++||++.+++.++... .....++.+ +....|+|++++++
T Consensus 87 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~----------~~~~~g~i~l~~~~ 135 (136)
T cd08375 87 FFSPDDFLGRTEIRVADILKETKESKGPITKRLLL----------HEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc----------ccccceeEEEEEEe
Confidence 999999999999999998752 222333433 25678999999986
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.5e-20 Score=155.50 Aligned_cols=116 Identities=34% Similarity=0.478 Sum_probs=101.7
Q ss_pred EEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCe
Q 011813 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~ 345 (477)
|+|+|++|++|+..+..+.+||||++++++.....++|++++++.||+|||+|.|.+.....+.|.|+|||+|.. +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999998889999999999975433456999999999999999999998765567899999999988 8999
Q ss_pred eEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 011813 346 LGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (477)
Q Consensus 346 lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (477)
||++.+++.++..+.....|+++. ....|+|++++..
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L~----------~~~~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSLN----------PQGKEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEECC----------CCCCceEEEEEEe
Confidence 999999999999988889999874 2357999888764
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.6e-20 Score=155.49 Aligned_cols=116 Identities=27% Similarity=0.401 Sum_probs=99.3
Q ss_pred EEEEEEEEccc---cccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCC
Q 011813 265 ILHVKVVRASK---LLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (477)
Q Consensus 265 ~L~V~v~~A~~---L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~ 341 (477)
.|+|+|++|+| |+.+|..|.+||||++++++++. +|++++++.||+|||+|.|.+.+.. ..|.|+|||++..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~---rTk~~~~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWV---RTRTVEDSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEe---EcCcccCCCCCcceeEEEEEecCCC-CEEEEEEEECCCcc
Confidence 38999999999 88899999999999999987654 8999999999999999999997654 58999999999873
Q ss_pred ------CCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEE
Q 011813 342 ------GHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVV 388 (477)
Q Consensus 342 ------~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l 388 (477)
+|++||++.++|..+..+.....|++|... + ..+.+..|+|++
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~-~---~~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSL-N---PSGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeC-C---CCCccCCcEEEe
Confidence 899999999999999998888899988642 1 123567788875
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-19 Score=157.31 Aligned_cols=112 Identities=27% Similarity=0.381 Sum_probs=97.0
Q ss_pred CceEEEEEEEEcccccccc-ccCCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEE-ec
Q 011813 262 PVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF-DW 337 (477)
Q Consensus 262 ~~G~L~V~v~~A~~L~~~d-~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~-d~ 337 (477)
..|.|.|+|++|+||+..+ ..|.+||||++++.++. ..++||+++++|+||+|||+|.|.+. .....|.++|| |+
T Consensus 27 ~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~ 105 (146)
T cd04028 27 KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDY 105 (146)
T ss_pred CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCC
Confidence 3589999999999999864 56889999999997653 34679999999999999999999998 56789999999 67
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecccccCC
Q 011813 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNI 374 (477)
Q Consensus 338 d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~ 374 (477)
+..+++++||++.++|+++..+.....|++|.+...+
T Consensus 106 ~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~~ 142 (146)
T cd04028 106 GRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSSL 142 (146)
T ss_pred CCCCCCceEEEEEEEcccccCCCCceeEEecCCcccc
Confidence 8888999999999999999888778889998765433
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-19 Score=153.51 Aligned_cols=122 Identities=31% Similarity=0.516 Sum_probs=101.4
Q ss_pred ceEEEEEEEEcccccccc-ccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCC
Q 011813 263 VGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~d-~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~ 341 (477)
.|.|+|+|++|++|+..+ ..+.+||||++++++. ...++|++++++.||.|||.|.|.+. ...+.|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCC
Confidence 489999999999999755 3467999999999873 23469999999999999999999987 44689999999999988
Q ss_pred CCCeeEEEEEECcccCCCCceE-EEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 342 GHDRLGMQLVPLKLLTPHETKE-FTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 342 ~d~~lG~~~v~L~~l~~~~~~~-~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
+|++||++.++|.++..+.... .+..+.. +++..|+|+++++|+|
T Consensus 79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~--------~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 KDKLIGTAEFDLSSLLQNPEQENLTKNLLR--------NGKPVGELNYDLRFFP 124 (124)
T ss_pred CCceeEEEEEEHHHhccCccccCcchhhhc--------CCccceEEEEEEEeCC
Confidence 9999999999999998765543 3333321 3667899999999987
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-19 Score=155.09 Aligned_cols=121 Identities=32% Similarity=0.467 Sum_probs=101.8
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCC---CCeEEEEEEecCCCC
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE---SQILQLQVFDWDKVG 341 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~---~~~L~v~V~d~d~~~ 341 (477)
.|+|+|++|++|+..+..|.+||||+++++++. ++|++++++.||.|||+|.|.+.+.. ...|.|+|||++..+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~---~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQK---KRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEE---ecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 389999999999999988999999999998754 48999999999999999999987543 367999999999886
Q ss_pred -CCCeeEEEEEECcccC-CCCceEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 011813 342 -GHDRLGMQLVPLKLLT-PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (477)
Q Consensus 342 -~d~~lG~~~v~L~~l~-~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (477)
+|++||++.++++++. .+.....|++|.+.. ..+..+|+|+|++.+.
T Consensus 78 ~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 78 RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRG-----LFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCC-----CCCCccEEEEEEEEEc
Confidence 8999999999999987 455667888876421 1245799999998764
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-19 Score=157.98 Aligned_cols=127 Identities=25% Similarity=0.310 Sum_probs=104.7
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCC-CCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCC
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKK-NLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d 343 (477)
.|+|+|++|++|+.++..|.+||||+++++++. .+|+++.+ |.||+|||+|.|.+.++....+.|+|||++..++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~---~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~d 77 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQV---LRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKD 77 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEE---eeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCC
Confidence 389999999999999999999999999999743 48888866 69999999999999876667899999999988899
Q ss_pred CeeEEEEEECcccCCC----CceEEEEecccccCC-CCCCCCccceEEEEEEEEEe
Q 011813 344 DRLGMQLVPLKLLTPH----ETKEFTLDLLKHTNI-SDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 344 ~~lG~~~v~L~~l~~~----~~~~~~~~l~~~~~~-~~~~~~~~~G~l~l~l~y~p 394 (477)
++||++.++|+++..+ .....|++|...... .+.+..+..|+|+|+++|.+
T Consensus 78 d~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 78 EPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred CeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 9999999999998743 345788888654211 01123567899999999986
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-19 Score=154.45 Aligned_cols=123 Identities=30% Similarity=0.453 Sum_probs=103.6
Q ss_pred eEEEEEEEEccccccccc--cCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCC
Q 011813 264 GILHVKVVRASKLLKKDF--LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~--~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~ 341 (477)
|+|+|+|++|++|+..+. .+.+||||++++++.. .+|+++++|.||.|||+|.|.+.+...+.|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~---~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQR---FKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEE---EecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence 789999999999999888 7899999999997543 58999999999999999999998766789999999999988
Q ss_pred CCCeeEEEEEECcccCC---CCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 011813 342 GHDRLGMQLVPLKLLTP---HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (477)
Q Consensus 342 ~d~~lG~~~v~L~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (477)
+|++||++.+++.++.. ......|++|..... ..+....|+|+|+++|
T Consensus 78 ~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~---~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRP---GKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCcceEEEEEHHHhhcccccCccceeEEccCccc---CccccccceEEEEEEC
Confidence 99999999999999873 333567887754311 1235679999999976
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.8e-20 Score=157.80 Aligned_cols=100 Identities=45% Similarity=0.746 Sum_probs=91.6
Q ss_pred CCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCC
Q 011813 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV 340 (477)
Q Consensus 261 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~ 340 (477)
...|.|+|+|++|.||..+|..+++||||.+.+++++. +|+++.+++||+|||.|.|.+.++ ...|+++|||+|.+
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~l---kT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~f 78 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKL---KTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTF 78 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeee---eeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCC
Confidence 46799999999999999999889999999999998876 899999999999999999999986 57899999999999
Q ss_pred CCCCeeEEEEEECcccCCCCceEE
Q 011813 341 GGHDRLGMQLVPLKLLTPHETKEF 364 (477)
Q Consensus 341 ~~d~~lG~~~v~L~~l~~~~~~~~ 364 (477)
++||++|.++|+|..+.......+
T Consensus 79 s~dD~mG~A~I~l~p~~~~~~~~~ 102 (168)
T KOG1030|consen 79 SSDDFMGEATIPLKPLLEAQKMDY 102 (168)
T ss_pred CcccccceeeeccHHHHHHhhhhc
Confidence 999999999999999876655444
|
|
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-19 Score=153.13 Aligned_cols=122 Identities=30% Similarity=0.485 Sum_probs=104.5
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCC
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~ 344 (477)
.|+|+|++|++|+..+..+.+||||++++++.. .+|+++++|.||.|||+|.|.+.+.....|.|+|||++..++++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~ 77 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQT---LETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKND 77 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEE---EeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 389999999999999988899999999997644 48999999999999999999998766678999999999999999
Q ss_pred eeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEE
Q 011813 345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (477)
Q Consensus 345 ~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 390 (477)
+||++.++|+++..+.....|+++.+.... ....++..|.|++.+
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~-~~~~~~~~G~l~~~~ 122 (123)
T cd04025 78 FLGKVVFSIQTLQQAKQEEGWFRLLPDPRA-EEESGGNLGSLRLKV 122 (123)
T ss_pred EeEEEEEEHHHcccCCCCCCEEECCCCCCC-CccccCceEEEEEEe
Confidence 999999999999877667788888654322 233577899999876
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-19 Score=154.53 Aligned_cols=105 Identities=31% Similarity=0.369 Sum_probs=92.5
Q ss_pred ceEEEEEEEEccccccccccCCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEe-e--cCCCCeEEEEEEec
Q 011813 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVV-K--EPESQILQLQVFDW 337 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v-~--~~~~~~L~v~V~d~ 337 (477)
.|.|.|+|++|++|+..+ .+.+||||++++.+.. ..+++|++++++.||.|||+|.|.+ . +.....|.++|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 588999999999999999 8999999999997643 3457999999999999999999987 3 33467899999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 011813 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (477)
Q Consensus 338 d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l 368 (477)
|..+++++||++.++|+++..++....|++|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999999999999999987777778765
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.6e-19 Score=150.89 Aligned_cols=119 Identities=22% Similarity=0.277 Sum_probs=100.7
Q ss_pred EEEEEEEcccccccc-ccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCC
Q 011813 266 LHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (477)
Q Consensus 266 L~V~v~~A~~L~~~d-~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~ 344 (477)
|+|+|++|+||+..+ ..|.+||||+++++.+. .++|+++++|.||.|||+|.|.+.+. ...|.|.|||++.+++|+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~--~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~ 78 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEE--VFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDS 78 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCcc--EEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCc
Confidence 789999999999874 45789999999997543 36899999999999999999999753 468999999999999999
Q ss_pred eeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 011813 345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (477)
Q Consensus 345 ~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (477)
+||++.++++++..+...+.|++|.+. . ...+..|+||+++++
T Consensus 79 ~iG~~~i~l~~l~~~~~~~~w~~L~~~-~----~~~~~~G~i~l~~~~ 121 (121)
T cd08401 79 VIGKVAIKKEDLHKYYGKDTWFPLQPV-D----ADSEVQGKVHLELRL 121 (121)
T ss_pred eEEEEEEEHHHccCCCCcEeeEEEEcc-C----CCCcccEEEEEEEEC
Confidence 999999999999888778889988653 1 124468999999864
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.1e-19 Score=150.90 Aligned_cols=122 Identities=23% Similarity=0.316 Sum_probs=101.7
Q ss_pred ceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCC
Q 011813 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~ 342 (477)
...|+|+|++|+||+.. +.+||||++++++.. ..+|+++ ++.||.|||+|.|.+.......+.|.|||++..++
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~--~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~ 76 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVK--VARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSK 76 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEe--EEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCC
Confidence 35799999999999875 478999999997643 3578874 68999999999998755444679999999999999
Q ss_pred CCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 343 HDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 343 d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
|++||++.++|+++..+...+.|+++.+.. ..+.+..|+|+|+++|.+
T Consensus 77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~----~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 77 DSEIAEVTVQLSKLQNGQETDEWYPLSSAS----PLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCeEEEEEEEHhHccCCCcccEeEEcccCC----CCCCCcCcEEEEEEEEEc
Confidence 999999999999999888888999886531 123567899999999986
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.5e-19 Score=150.86 Aligned_cols=122 Identities=25% Similarity=0.400 Sum_probs=103.0
Q ss_pred EEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCe
Q 011813 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~ 345 (477)
|.|+|++|+||+. ..|.+||||+++++.. ...++|+++++|.||+|||.|.|.+.. ..+.|.|+|||++..++|++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~-~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEP-PQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCC-CcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCce
Confidence 6799999999987 5689999999999742 234699999999999999999999854 46789999999999989999
Q ss_pred eEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEec
Q 011813 346 LGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (477)
Q Consensus 346 lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~ 395 (477)
||++.+++.++..+.....|+++..... .+....|+|++++.|.+.
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~----~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRPY----EGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCCC----CCCCcceEEEEEEEEecc
Confidence 9999999999998777778888764311 135679999999999873
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.9e-19 Score=150.81 Aligned_cols=115 Identities=34% Similarity=0.500 Sum_probs=100.7
Q ss_pred eEEEEEEEEccccccccc------cCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEec
Q 011813 264 GILHVKVVRASKLLKKDF------LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDW 337 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~------~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~ 337 (477)
|+|+|+|++|++|+..+. .|.+||||++++++. .++|++++++.||.|||+|.|.+.+...+.|.++|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~---~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQ---TFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCE---eEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence 789999999999998874 368999999999863 35899999999999999999999876678999999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 011813 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (477)
Q Consensus 338 d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (477)
+.. +|++||++.+++.++..+.....|++|. ....|+|+++++|
T Consensus 78 ~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~----------~~~~G~~~~~~~~ 121 (121)
T cd08391 78 DPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLE----------DVKSGRLHLKLEW 121 (121)
T ss_pred CCC-CCCcEEEEEEEHHHhcccCccceEEECc----------CCCCceEEEEEeC
Confidence 987 8999999999999998877778899874 2367999999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-19 Score=152.72 Aligned_cols=110 Identities=34% Similarity=0.407 Sum_probs=95.0
Q ss_pred ccCCceEEEEEEEEcccccccccc-CCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEeec--CCCCeEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQ 333 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~-g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v~~--~~~~~L~v~ 333 (477)
.....+.|.|+|++|+||+..+.. |.+||||++++.+.. ..+++|+++++|.||+|||+|.|.+.. .....|.++
T Consensus 10 y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~ 89 (125)
T cd08393 10 YDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLS 89 (125)
T ss_pred EECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEE
Confidence 345568999999999999999875 899999999997543 345799999999999999999999863 345689999
Q ss_pred EEecCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 011813 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (477)
Q Consensus 334 V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l 368 (477)
|||++..+++++||++.++|.++..+.....|++|
T Consensus 90 V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 90 VWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 99999999999999999999999877777778775
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-18 Score=148.21 Aligned_cols=123 Identities=25% Similarity=0.364 Sum_probs=102.0
Q ss_pred CceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCC
Q 011813 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (477)
Q Consensus 262 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~ 341 (477)
|.++|+|+|++|++|+..+..|.+||||++.++++. .+|++++++.||+|||.|.|.+.+. ...|.|+|||++..
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~- 75 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGES---VRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL- 75 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEE---EEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCC-
Confidence 468999999999999999988999999999998764 4899999999999999999988764 67899999999876
Q ss_pred CCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 342 GHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 342 ~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
+|++||++.+++.++......++++. ... ...+++..|+|.+++++.+
T Consensus 76 ~d~~lG~~~~~l~~~~~~~~~~~~l~--~~~---~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 CDEFLGQATLSADPNDSQTLRTLPLR--KRG---RDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred CCCceEEEEEecccCCCcCceEEEcc--cCC---CCCCCCCCCEEEEEEEEcc
Confidence 58999999999998765555554443 211 1235788999999998875
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.9e-19 Score=150.68 Aligned_cols=110 Identities=31% Similarity=0.412 Sum_probs=95.8
Q ss_pred ccCCceEEEEEEEEccccccccc-cCCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEeec--CCCCeEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQ 333 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~-~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v~~--~~~~~L~v~ 333 (477)
.....|.|.|+|++|+||+..+. .|.+||||++++.+.. ..++||++++++.||+|||+|.|.+.. .....|.|+
T Consensus 10 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~ 89 (125)
T cd04029 10 YDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS 89 (125)
T ss_pred EECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 45677999999999999998875 4789999999997643 345799999999999999999999864 235689999
Q ss_pred EEecCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 011813 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (477)
Q Consensus 334 V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l 368 (477)
|||++..+++++||++.++|.++...+....|++|
T Consensus 90 V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 90 VWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred EEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 99999999999999999999999988888888876
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.3e-19 Score=149.89 Aligned_cols=112 Identities=30% Similarity=0.552 Sum_probs=98.1
Q ss_pred cccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEEE
Q 011813 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVF 335 (477)
Q Consensus 258 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V~ 335 (477)
......|.|.|+|++|++|+..+..|.+||||++++.+.....++|++++++.||.|||+|.|.+... ....|.++||
T Consensus 10 ~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~ 89 (124)
T cd08387 10 EYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLY 89 (124)
T ss_pred EECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEE
Confidence 34566799999999999999999889999999999975544567999999999999999999998643 3568999999
Q ss_pred ecCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 011813 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (477)
Q Consensus 336 d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~ 369 (477)
|++.+++|++||++.++|+++..++....|++|.
T Consensus 90 d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 90 DFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred ECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 9999999999999999999999887888898864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-18 Score=146.92 Aligned_cols=113 Identities=25% Similarity=0.345 Sum_probs=95.7
Q ss_pred EEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCe
Q 011813 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~ 345 (477)
|+|+|++|+||+.. .+||||+++++++ ..+|+++++|.||+|||+|.|.+.+.....|.++|||+|.. +|++
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~---~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~ 73 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNY---KGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDF 73 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCc---cccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCce
Confidence 89999999999887 7899999999864 35999999999999999999998776678899999999976 7899
Q ss_pred eEEEEEECcccCCCC-----ceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 011813 346 LGMQLVPLKLLTPHE-----TKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (477)
Q Consensus 346 lG~~~v~L~~l~~~~-----~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (477)
||++.++|+++..+. ....|++|.... +.+.+|+|+|++.|
T Consensus 74 lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~------~~~~~G~i~l~~~~ 119 (121)
T cd08378 74 LGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK------GGRVGGELMLAVWF 119 (121)
T ss_pred eeeEEEEhHhCcCCCCCCCCCCcceEEccCCC------CCccceEEEEEEEe
Confidence 999999999987532 245788875531 24678999999987
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-18 Score=149.01 Aligned_cols=123 Identities=35% Similarity=0.516 Sum_probs=101.3
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEEcCcc----cCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCC
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV 340 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~----~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~ 340 (477)
.|+|+|++|++|+..+..|.+||||++++.+.. ....+|+++++|.||.|||+|.|.+... ...|.++|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 489999999999999988999999999997641 2246899999999999999999998653 56899999999999
Q ss_pred CCCCeeEEEEEECcccCCCCc------eEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 011813 341 GGHDRLGMQLVPLKLLTPHET------KEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (477)
Q Consensus 341 ~~d~~lG~~~v~L~~l~~~~~------~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (477)
++|++||++.+++.++..+.. ...|++|.+. ...++..|+|++++.|.
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR-----SSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeec-----CCCCcceeEEEEEEeeC
Confidence 999999999999999886532 3466666532 11356799999999984
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-18 Score=148.33 Aligned_cols=111 Identities=28% Similarity=0.366 Sum_probs=93.7
Q ss_pred ccCCceEEEEEEEEcccccccccc-CCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEE-ee--cCCCCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV-VK--EPESQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~-g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~-v~--~~~~~~L~v~V 334 (477)
.+...+.|+|+|++|+||+..+.. +.+||||++++.+...+++||+++++|.||+|||+|.|. +. +.....|.++|
T Consensus 11 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V 90 (128)
T cd08388 11 YNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAV 90 (128)
T ss_pred EECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEE
Confidence 455678999999999999998876 889999999998665556799999999999999999993 43 22345799999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCC--CceEEEEecc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPH--ETKEFTLDLL 369 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~--~~~~~~~~l~ 369 (477)
||+|.+++|++||++.++|+++... +....|++++
T Consensus 91 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 91 LSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 9999999999999999999999755 5566887764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-18 Score=151.55 Aligned_cols=123 Identities=32% Similarity=0.439 Sum_probs=103.0
Q ss_pred ceEEEEEEEEcccccccc------------------------------ccCCCCcEEEEEEcCcccCceeeeeeCCCCCC
Q 011813 263 VGILHVKVVRASKLLKKD------------------------------FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNP 312 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~d------------------------------~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP 312 (477)
.|.|.|+|.+|++|+.+| ..|.+||||++++++.+. .+|++++++.||
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~--~rT~v~~~~~nP 83 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARV--ARTRVIENSENP 83 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEe--eEEEEeCCCCCC
Confidence 599999999999999887 246789999999986543 589999999999
Q ss_pred eeeeEEEEEeecCCCCeEEEEEEecCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 011813 313 EWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (477)
Q Consensus 313 ~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (477)
+|||+|.|.+... .+.|.|+|||+|..+ +++||++.++++++..+...+.|+++.... ....+..|+|+++++|
T Consensus 84 ~WnE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~----~~~~~~~~~l~v~~~f 157 (158)
T cd04015 84 VWNESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSN----GKPPKPGAKIRVSLQF 157 (158)
T ss_pred ccceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCC----CCCCCCCCEEEEEEEE
Confidence 9999999998754 468999999999774 689999999999999888888999986531 1124457899999998
Q ss_pred E
Q 011813 393 V 393 (477)
Q Consensus 393 ~ 393 (477)
.
T Consensus 158 ~ 158 (158)
T cd04015 158 T 158 (158)
T ss_pred C
Confidence 4
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.9e-18 Score=144.87 Aligned_cols=118 Identities=34% Similarity=0.518 Sum_probs=99.8
Q ss_pred eEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCC
Q 011813 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d 343 (477)
|.|+|+|++|++|+..+..+.+||||++++++.. .+|++++++.||.|||+|.|.+.+. ...+.|+|||++..+++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~ 76 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNAR---LQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKP 76 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEe---eecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCC
Confidence 7899999999999999988999999999998654 4899999999999999999998653 57899999999988899
Q ss_pred CeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 011813 344 DRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (477)
Q Consensus 344 ~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (477)
++||++.+++.++..+.. .|+.+... ....+..|+|++++.+
T Consensus 77 ~~iG~~~~~l~~~~~~~~--~~~~l~~~-----~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 77 EFLGKVAIPLLSIKNGER--KWYALKDK-----KLRTRAKGSILLEMDV 118 (119)
T ss_pred ceeeEEEEEHHHCCCCCc--eEEECccc-----CCCCceeeEEEEEEEe
Confidence 999999999999986654 45555432 1134579999999876
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-18 Score=148.24 Aligned_cols=110 Identities=17% Similarity=0.143 Sum_probs=93.7
Q ss_pred cccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcc---cCceeeeeeCCCCCCeeeeEEEEEeec--CCCCeEEE
Q 011813 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK---LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQL 332 (477)
Q Consensus 258 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~---~~~~kT~v~~~t~nP~WnE~f~f~v~~--~~~~~L~v 332 (477)
......+.|.|+|++|+||+..+..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+.. .....|.+
T Consensus 8 ~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~ 87 (124)
T cd08680 8 RYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQV 87 (124)
T ss_pred EECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEE
Confidence 3456678999999999999998888899999999998765 346899999999999999999999864 34679999
Q ss_pred EEEecCCCCCCCeeEEEEEECcccCCCC-ceEEEEe
Q 011813 333 QVFDWDKVGGHDRLGMQLVPLKLLTPHE-TKEFTLD 367 (477)
Q Consensus 333 ~V~d~d~~~~d~~lG~~~v~L~~l~~~~-~~~~~~~ 367 (477)
+|||++..+++++||++.++|+++.... ....|++
T Consensus 88 ~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~ 123 (124)
T cd08680 88 DVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYN 123 (124)
T ss_pred EEEeCCCCCceeEEEEEEEEhhhccCCCcccccccc
Confidence 9999999999999999999999996553 3445554
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-18 Score=150.73 Aligned_cols=124 Identities=28% Similarity=0.361 Sum_probs=97.7
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEee---------------cCCC
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVK---------------EPES 327 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~---------------~~~~ 327 (477)
.|+|+|++|+||+. ..|.+||||++++.+. +...++|+++++|.||+|||+|.|.+. +...
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 38999999999998 4689999999999764 223568999999999999999999985 1223
Q ss_pred CeEEEEEEecCCCCCCCeeEEEEEECcccCCC-CceEEEEecccccCCCC-----CCCCccceEEEEEE
Q 011813 328 QILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH-ETKEFTLDLLKHTNISD-----PKDMKQRGKIVVEL 390 (477)
Q Consensus 328 ~~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~-~~~~~~~~l~~~~~~~~-----~~~~~~~G~l~l~l 390 (477)
..|.++|||++..++|++||++.++|.++..+ .....|++|.+.....+ ..+....|.|++++
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 57999999999888999999999999999987 56678888865533221 12244567777764
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-18 Score=147.18 Aligned_cols=110 Identities=35% Similarity=0.456 Sum_probs=96.7
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEEEe
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFD 336 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V~d 336 (477)
.....|.|+|+|++|+||+..+..+.+||||++++.+.....++|++++++.||+|||+|.|.+... ....|.|+|||
T Consensus 11 y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d 90 (124)
T cd08385 11 YDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYD 90 (124)
T ss_pred EeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEe
Confidence 4456789999999999999999889999999999976655567999999999999999999998642 35689999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 011813 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (477)
Q Consensus 337 ~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l 368 (477)
++.+++|++||++.++|+++..+.....|+++
T Consensus 91 ~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 91 FDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred CCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 99999999999999999999887777888876
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-18 Score=145.87 Aligned_cols=95 Identities=37% Similarity=0.574 Sum_probs=84.7
Q ss_pred eEEEEEEEEcccccccccc-CCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecC---CCCeEEEEEEecCC
Q 011813 264 GILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP---ESQILQLQVFDWDK 339 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~-g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~---~~~~L~v~V~d~d~ 339 (477)
|+|+|+|++|++|+..+.. +.+||||++++.+.....++|+++++|.||+|||+|.|.+... ....|.++|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 7899999999999999987 8999999999976544457999999999999999999987643 35689999999999
Q ss_pred CCCCCeeEEEEEECcccCC
Q 011813 340 VGGHDRLGMQLVPLKLLTP 358 (477)
Q Consensus 340 ~~~d~~lG~~~v~L~~l~~ 358 (477)
.++|++||++.+++.++..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~ 99 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE 99 (111)
T ss_pred CCCCCcceEEEEEHHHHhc
Confidence 9999999999999999973
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-18 Score=178.03 Aligned_cols=174 Identities=22% Similarity=0.241 Sum_probs=143.3
Q ss_pred eEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCC
Q 011813 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d 343 (477)
..|.|+|.+|+||+..+..|.+||||.+.++.+.. .+|.++.+|+.|.|.|+|+|.++.. -+.|.|.|||+| +++|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v--~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d-~~~D 80 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEV--CRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRD-LKRD 80 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhh--hhhhhhhhhcCCccccceEEecCcc-eeeEEEEEeccc-cccc
Confidence 56899999999999999999999999999997654 6899999999999999999999754 467999999999 9999
Q ss_pred CeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCcc
Q 011813 344 DRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEE 423 (477)
Q Consensus 344 ~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (477)
+.||.+.+.-+++......+.|+.|.+ .++ +.+.+|+|||++.+.+..
T Consensus 81 ~~IGKvai~re~l~~~~~~d~W~~L~~-VD~----dsEVQG~v~l~l~~~e~~--------------------------- 128 (800)
T KOG2059|consen 81 DIIGKVAIKREDLHMYPGKDTWFSLQP-VDP----DSEVQGKVHLELALTEAI--------------------------- 128 (800)
T ss_pred cccceeeeeHHHHhhCCCCccceeccc-cCC----ChhhceeEEEEEEecccc---------------------------
Confidence 999999999999887777778887754 333 478999999999998722
Q ss_pred ccCcceEEEEEEeeeecCCC--CCCCCcEEEEEEcCeE----eeeeeeeeccCccceec
Q 011813 424 ALSGAGLLSVLVQGAEDVEG--ENHNNPYAIILYKGDK----KRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 424 ~~~~~g~L~V~V~~A~~L~~--~~~~DPyvkv~l~~~~----~kTkv~~~t~~P~~~~~ 476 (477)
+..-+...+.+++++.+ ++.+||||++++.+.. ++|+++++|.+|+|++.
T Consensus 129 ---~~~~~~c~~L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev 184 (800)
T KOG2059|consen 129 ---QSSGLVCHVLKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEV 184 (800)
T ss_pred ---CCCcchhhhhhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhh
Confidence 12223334445555543 6789999999986644 49999999999999954
|
|
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.6e-18 Score=146.58 Aligned_cols=110 Identities=28% Similarity=0.335 Sum_probs=92.2
Q ss_pred ccCCceEEEEEEEEcccccccccc-CCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ 333 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~-g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~ 333 (477)
.....+.|.|+|++|+||+..+.. |.+||||++++.+.. ..++||++++++.||+|||+|.|.+... ....|.+.
T Consensus 10 Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~ 89 (128)
T cd08392 10 YNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVS 89 (128)
T ss_pred EeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEE
Confidence 445668999999999999998875 899999999998654 3456999999999999999999998642 35689999
Q ss_pred EEecCCCCCCCeeEEEEEECcccCCCC---ceEEEEec
Q 011813 334 VFDWDKVGGHDRLGMQLVPLKLLTPHE---TKEFTLDL 368 (477)
Q Consensus 334 V~d~d~~~~d~~lG~~~v~L~~l~~~~---~~~~~~~l 368 (477)
|||++.++++++||++.++|+++.... ....|++|
T Consensus 90 V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 90 VWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 999999999999999999999986543 33456554
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=143.67 Aligned_cols=118 Identities=31% Similarity=0.434 Sum_probs=100.5
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCC
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~ 344 (477)
.|+|+|++|++|+..+..+.+||||++++.+.....++|++++++.||.|||+|.|.+.......|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 58999999999999998899999999998755344569999999999999999999998755678999999999888999
Q ss_pred eeEEEEEECcccCC---CCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 345 RLGMQLVPLKLLTP---HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 345 ~lG~~~v~L~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
+||++.++|.++.. +.....|+++. ..|++++.++|.-
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~------------~~g~i~l~~~~~~ 122 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLD------------TQGRLLLRVSMEG 122 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcC------------CCCeEEEEEEEee
Confidence 99999999987643 34567888763 2699999999864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-17 Score=145.16 Aligned_cols=120 Identities=25% Similarity=0.437 Sum_probs=98.5
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecC---------CCCeEEEEEE
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP---------ESQILQLQVF 335 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~---------~~~~L~v~V~ 335 (477)
.|+|+|++|++|+.+|..|.+||||+++++++. ++|+++++|.||.|||+|.|.+... ....+.++||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQS---QETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCee---eEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 489999999999999999999999999998643 5899999999999999999975432 1257999999
Q ss_pred ecCCCCCCCeeEEEEE-ECcccC---CCCceEEEEecccccCCCCCCCCccceEEEEEEEEEec
Q 011813 336 DWDKVGGHDRLGMQLV-PLKLLT---PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (477)
Q Consensus 336 d~d~~~~d~~lG~~~v-~L~~l~---~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~ 395 (477)
|+|..++|++||++.+ ++..+. .......|++|.+ .+...|+|++++++.+.
T Consensus 79 d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~--------~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 79 DQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK--------GGQSAGELLAAFELIEV 134 (135)
T ss_pred eCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec--------CCCchhheeEEeEEEEe
Confidence 9999999999999987 444443 2356668888753 25579999999999873
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.7e-18 Score=142.87 Aligned_cols=118 Identities=25% Similarity=0.428 Sum_probs=98.9
Q ss_pred EEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCe
Q 011813 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~ 345 (477)
|.|+|++|++|+..+..|.+||||++++++.. ..+|+++++|.||.|||.|.|.+... .+.|.|+|||++..++|++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~ 78 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEV--IIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDV 78 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEe--eeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCE
Confidence 78999999999999999999999999997543 35899999999999999999998643 4789999999999999999
Q ss_pred eEEEEEECcccCCC-CceEEEEecccccCCCCCCCCccceEEEEEEE
Q 011813 346 LGMQLVPLKLLTPH-ETKEFTLDLLKHTNISDPKDMKQRGKIVVELT 391 (477)
Q Consensus 346 lG~~~v~L~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~ 391 (477)
||++.++++++..+ ...+.|++|.+. + ......|+|++.++
T Consensus 79 iG~~~~~~~~~~~~~~~~~~W~~L~~~-~----~~~~~~G~i~l~~~ 120 (121)
T cd04054 79 IGKVSLTREVISAHPRGIDGWMNLTEV-D----PDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEEcHHHhccCCCCCCcEEECeee-C----CCCccccEEEEEEE
Confidence 99999999888753 335678887542 1 12457899999875
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-17 Score=144.50 Aligned_cols=116 Identities=28% Similarity=0.440 Sum_probs=100.4
Q ss_pred ceEEEEEEEEcccccccccc----------CCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEE
Q 011813 263 VGILHVKVVRASKLLKKDFL----------GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQL 332 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~d~~----------g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v 332 (477)
.|.|+|+|++|++|+..+.. +.+||||+++++++.. .+|+++++|.||.|||+|.|.+.+ ...|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~--~kT~~~~~t~~P~Wne~f~~~v~~--~~~l~~ 78 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHI--GKTSTKPKTNSPVWNEEFTTEVHN--GRNLEL 78 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEE--eEEeEcCCCCCCCcceeEEEEcCC--CCEEEE
Confidence 48999999999999988752 6799999999986543 589999999999999999999963 468999
Q ss_pred EEEecCCCCCCCeeEEEEEECcccCC--CCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 333 QVFDWDKVGGHDRLGMQLVPLKLLTP--HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 333 ~V~d~d~~~~d~~lG~~~v~L~~l~~--~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
.|||++..++|++||++.++|.++.. +.....|++|. +.|+|+++++|..
T Consensus 79 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~------------~~G~l~l~~~~~~ 130 (132)
T cd04014 79 TVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE------------PQGKLHVKIELKG 130 (132)
T ss_pred EEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc------------CCcEEEEEEEEec
Confidence 99999988899999999999999887 56678888873 4699999999875
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=143.26 Aligned_cols=117 Identities=32% Similarity=0.460 Sum_probs=100.2
Q ss_pred EEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEEEecCCCCCCCeeE
Q 011813 270 VVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKVGGHDRLG 347 (477)
Q Consensus 270 v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V~d~d~~~~d~~lG 347 (477)
|++|++|+. ..|.+||||++++++.+ ++|++++++.||+|||+|.|.+... ..+.|.++|||++..++|++||
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~---~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG 76 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVK---KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIG 76 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEe---eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEE
Confidence 689999998 57899999999998654 4899999999999999999999754 4678999999999998999999
Q ss_pred EEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEeccc
Q 011813 348 MQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKE 397 (477)
Q Consensus 348 ~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~ 397 (477)
++.++++++..+.....|++|... ......|+|+++++|.|...
T Consensus 77 ~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 77 SATVSLQDLVSEGLLEVTEPLLDS------NGRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEEEhhHcccCCceEEEEeCcCC------CCCcccEEEEEEEEEeCCCC
Confidence 999999999988888888888532 12335799999999999543
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.2e-18 Score=144.62 Aligned_cols=111 Identities=27% Similarity=0.344 Sum_probs=97.3
Q ss_pred cccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEE-eec--CCCCeEEEEE
Q 011813 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV-VKE--PESQILQLQV 334 (477)
Q Consensus 258 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~-v~~--~~~~~L~v~V 334 (477)
......+.|.|+|++|+||+..+..|.+||||++.+.+.+.++++|+++++ .||+|||+|.|. +.. .....|.++|
T Consensus 10 ~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V 88 (124)
T cd08389 10 EYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRL 88 (124)
T ss_pred EECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEE
Confidence 355667899999999999999998889999999999777666789999887 999999999998 542 2467899999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~ 369 (477)
||++.++++++||++.++|+++..+.....|++|.
T Consensus 89 ~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 89 YGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred EECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 99999999999999999999999888888888874
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.3e-18 Score=143.51 Aligned_cols=108 Identities=29% Similarity=0.415 Sum_probs=92.5
Q ss_pred eeecCCcccccccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeec-CC
Q 011813 248 EIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE-PE 326 (477)
Q Consensus 248 ~i~i~~~~~~~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~-~~ 326 (477)
..|++++..+......|.|+|+|++|++|+. +..+.+||||+++++++ .++|++++++.||+|||+|.|.... ..
T Consensus 12 ~~~~~~~~~~~~~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~---~~kT~vi~~t~nPvWNE~F~f~~~~~~~ 87 (127)
T cd04032 12 SSPNVNSNCCPTRRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQ---EKRTEVIWNNNNPRWNATFDFGSVELSP 87 (127)
T ss_pred CCCCcCCCcCcCcCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCc---cccCceecCCCCCcCCCEEEEecccCCC
Confidence 4577777665668889999999999999984 66788999999999865 4599999999999999999997533 34
Q ss_pred CCeEEEEEEecCCCCCCCeeEEEEEECcccCCC
Q 011813 327 SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH 359 (477)
Q Consensus 327 ~~~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~ 359 (477)
.+.|+|+|||+|..++|++||++.++|.....+
T Consensus 88 ~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 88 GGKLRFEVWDRDNGWDDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCEEEEEEEeCCCCCCCCeeEEEEEEecCCcee
Confidence 679999999999999999999999999976643
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=143.45 Aligned_cols=111 Identities=38% Similarity=0.556 Sum_probs=96.0
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeec---CCCCeEEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQVF 335 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~---~~~~~L~v~V~ 335 (477)
.....+.|+|+|++|+||+..+..+.+||||++++.+......+|++++++.||.|||+|.|.+.. .....|.++||
T Consensus 11 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~ 90 (125)
T cd08386 11 YDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVL 90 (125)
T ss_pred ECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEE
Confidence 455678999999999999999988999999999996544455799999999999999999997432 23567999999
Q ss_pred ecCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 011813 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (477)
Q Consensus 336 d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~ 369 (477)
|++..+++++||++.++++++..+.....|++|.
T Consensus 91 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 91 DYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred eCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 9999999999999999999999888888888874
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.3e-18 Score=139.98 Aligned_cols=94 Identities=22% Similarity=0.315 Sum_probs=81.5
Q ss_pred eEEEEEEEEcccccccccc----CCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCC-CCeEEEEEEecC
Q 011813 264 GILHVKVVRASKLLKKDFL----GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWD 338 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~----g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~-~~~L~v~V~d~d 338 (477)
|+|.|+|++|++|+..+.. +.+||||+++++.+. +||++++++.||+|||.|.|.+.+.. ...|.++|||+|
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~---~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRV---FRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEe---EeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence 7899999999999987632 358999999997543 48999999999999999999986543 457999999999
Q ss_pred CCCCCCeeEEEEEECcccCCCC
Q 011813 339 KVGGHDRLGMQLVPLKLLTPHE 360 (477)
Q Consensus 339 ~~~~d~~lG~~~v~L~~l~~~~ 360 (477)
..++|++||++.++|+++..+.
T Consensus 78 ~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 78 KFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCCCcceEEEEEEHHHHHhhC
Confidence 9999999999999999987653
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.3e-18 Score=143.78 Aligned_cols=106 Identities=25% Similarity=0.277 Sum_probs=88.7
Q ss_pred CceEEEEEEEEccccccccccCCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEeecCC-CCeEEEEEEecC
Q 011813 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWD 338 (477)
Q Consensus 262 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v~~~~-~~~L~v~V~d~d 338 (477)
..+.|.|+|++|+||+..+ .|.+||||++++.+.. ..+++|++++++.||+|||+|.|.+.... ...|.++|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 4589999999999999988 7899999999998653 23568999999999999999999986422 357899999999
Q ss_pred CCC-CCCeeEEEEEECcccCCCCceEEEEec
Q 011813 339 KVG-GHDRLGMQLVPLKLLTPHETKEFTLDL 368 (477)
Q Consensus 339 ~~~-~d~~lG~~~v~L~~l~~~~~~~~~~~l 368 (477)
... ++++||++.++|.++..+.....|+.|
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 765 478999999999999876666666643
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-17 Score=140.85 Aligned_cols=119 Identities=35% Similarity=0.548 Sum_probs=96.3
Q ss_pred EEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCC--C
Q 011813 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG--H 343 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~--d 343 (477)
|+|+|++|++|+..+..+.+||||++++++. ..++|++++++.||.|||+|.|.+.. .+.|.++|||++..++ |
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~--~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d 77 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGG--QTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQ 77 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCc--cceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCC
Confidence 7999999999999998899999999999753 34689999999999999999999965 6799999999998765 5
Q ss_pred CeeEEEEEECcccCCCC-ceEEEEecccccCCCCCCCCccceEEEEEEE
Q 011813 344 DRLGMQLVPLKLLTPHE-TKEFTLDLLKHTNISDPKDMKQRGKIVVELT 391 (477)
Q Consensus 344 ~~lG~~~v~L~~l~~~~-~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~ 391 (477)
++||++.+++.++.... ....|+++... .+ ...+...|+|.++++
T Consensus 78 ~~lG~~~i~l~~l~~~~~~~~~~~~l~~~-~~--~~~~~~~G~v~~~~~ 123 (123)
T cd08382 78 GFLGCVRIRANAVLPLKDTGYQRLDLRKL-KK--SDNLSVRGKIVVSLS 123 (123)
T ss_pred ceEeEEEEEHHHccccCCCccceeEeecC-CC--CCCceEeeEEEEEeC
Confidence 79999999999987544 33567666332 11 123566899988763
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-17 Score=142.44 Aligned_cols=110 Identities=31% Similarity=0.413 Sum_probs=93.7
Q ss_pred ccCCceEEEEEEEEcccccccc-ccCCCCcEEEEEEcCccc--CceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKL--PWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ 333 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d-~~g~~dpyv~v~l~~~~~--~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~ 333 (477)
.+...|.|.|+|++|+||+..+ ..+.+||||++++.+... ..++|++++++.||+|||+|.|.+... ....|.++
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~ 88 (123)
T cd08521 9 YNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLS 88 (123)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 4556799999999999999988 678999999999965432 457899999999999999999998642 35689999
Q ss_pred EEecCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 011813 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (477)
Q Consensus 334 V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l 368 (477)
|||++..+++++||++.++|+++..+.....|++|
T Consensus 89 v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 89 VWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 99999999999999999999999877666777754
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-17 Score=141.99 Aligned_cols=110 Identities=30% Similarity=0.332 Sum_probs=94.6
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEeec--CCCCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v~~--~~~~~L~v~V 334 (477)
.....+.|+|+|++|+||+..+..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+.. .....|.+.|
T Consensus 11 y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v 90 (127)
T cd04030 11 YSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAV 90 (127)
T ss_pred EeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEE
Confidence 455678999999999999999988999999999997543 345799999999999999999999863 2356899999
Q ss_pred EecCCC--CCCCeeEEEEEECcccCCCCceEEEEec
Q 011813 335 FDWDKV--GGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (477)
Q Consensus 335 ~d~d~~--~~d~~lG~~~v~L~~l~~~~~~~~~~~l 368 (477)
||++.. ++|++||++.++|.++..+.....|++|
T Consensus 91 ~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 91 KNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred EECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 999875 6899999999999999877777788775
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-17 Score=139.62 Aligned_cols=112 Identities=28% Similarity=0.371 Sum_probs=96.9
Q ss_pred cccCCceEEEEEEEEcccccccc-ccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEE
Q 011813 258 AIKKPVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (477)
Q Consensus 258 ~~~~~~G~L~V~v~~A~~L~~~d-~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V 334 (477)
..+...+.|.|+|++|++|+..+ ..+.+||||++++.+.....++|++++++.||+|||+|.|.+... ....|.|+|
T Consensus 8 ~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v 87 (123)
T cd08390 8 QYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSV 87 (123)
T ss_pred EECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEE
Confidence 34566789999999999999988 678899999999975544457899999999999999999998643 245799999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~ 369 (477)
||++..+++++||++.++|+++........|++|.
T Consensus 88 ~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 88 YDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred EECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 99999888999999999999999888888888863
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-17 Score=136.81 Aligned_cols=99 Identities=30% Similarity=0.438 Sum_probs=87.1
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCC
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~ 344 (477)
.|.|+|++|++|+..+..+.+||||+++++++ .++|+++++|.||.|||+|.|.+.++..+.|.|+|||++. ++
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~---~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~ 74 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKT---TQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GK 74 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCE---EEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CC
Confidence 38999999999999988899999999999874 3589999999999999999999988777899999999985 78
Q ss_pred eeEEEEEECcccCCCC--ceEEEEecc
Q 011813 345 RLGMQLVPLKLLTPHE--TKEFTLDLL 369 (477)
Q Consensus 345 ~lG~~~v~L~~l~~~~--~~~~~~~l~ 369 (477)
+||++.++|.++..+. ....|++|.
T Consensus 75 ~iG~~~i~l~~l~~~~~~~~~~w~~L~ 101 (105)
T cd04050 75 SLGSLTLPLSELLKEPDLTLDQPFPLD 101 (105)
T ss_pred ccEEEEEEHHHhhccccceeeeeEecC
Confidence 9999999999987553 456788774
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=140.67 Aligned_cols=124 Identities=23% Similarity=0.245 Sum_probs=98.5
Q ss_pred eEEEEEEEEccccccccccCCCCcEEEEEE--cCcccCceeeeeeCCCCCCeeeeEEEEEeecCC--------CCeEEEE
Q 011813 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE--------SQILQLQ 333 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~--------~~~L~v~ 333 (477)
|.|+|....+.+|+..+..+.+||||++++ .+....+.||+++++|+||+|||+|.|.+.... ...|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 445555444444778777789999999997 323445679999999999999999999996431 4679999
Q ss_pred EEecCCC-CCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 334 VFDWDKV-GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 334 V~d~d~~-~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
|||++.+ ++|++||++.++|+.+..+.....+++|... .....|+|+++++.-.
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~-------~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG-------RKATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhC-------CCCcCCEEEEEEEecC
Confidence 9999986 5799999999999999888777778888642 2456789999998764
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.7e-17 Score=140.10 Aligned_cols=109 Identities=29% Similarity=0.433 Sum_probs=89.7
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEeecC---CCCeEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP---ESQILQLQ 333 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v~~~---~~~~L~v~ 333 (477)
.+...|.|+|+|++|++|+..+..+.+||||++++.+.. ...++|+++++|.||+|||+|.|.+... ....|.|+
T Consensus 11 ~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~ 90 (125)
T cd04031 11 YDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVT 90 (125)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEE
Confidence 345568999999999999999888999999999997632 2456899999999999999999986432 35789999
Q ss_pred EEecCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 011813 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (477)
Q Consensus 334 V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l 368 (477)
|||++..++|++||++.++|++... .....|++|
T Consensus 91 V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L 124 (125)
T cd04031 91 VWDYDRDGENDFLGEVVIDLADALL-DDEPHWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeeEEEEecccccc-cCCcceEEC
Confidence 9999999899999999999998332 233466665
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=137.68 Aligned_cols=115 Identities=32% Similarity=0.511 Sum_probs=94.5
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCC----
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV---- 340 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~---- 340 (477)
.|+|+|++|++|+..|..|.+||||++++++.. ++|+++++|.||.|||+|.|.+... ...|.++|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~---~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTK---KRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEe---eecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence 589999999999999988999999999997543 5899999999999999999988654 46899999999852
Q ss_pred -------CCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEE
Q 011813 341 -------GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (477)
Q Consensus 341 -------~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 390 (477)
+.|++||++.+++.++... ...|+.|.+.. .....+|+|++++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~~--~~~w~~L~~~~-----~~~~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSGE--MDVWYNLEKRT-----DKSAVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccCC--CCeEEECccCC-----CCCcEeEEEEEEC
Confidence 4689999999999988644 45677775432 2356799999864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=135.17 Aligned_cols=114 Identities=41% Similarity=0.632 Sum_probs=98.1
Q ss_pred EEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCe
Q 011813 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~ 345 (477)
|+|+|++|++|+..+..+.+||||++++.+.. .++|+++.++.||.|||+|.|.+.+...+.+.|+|||++..+++++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~--~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~ 78 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEK--VFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDL 78 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCc--ceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCc
Confidence 57999999999998888899999999997533 3689999999999999999999986666889999999998889999
Q ss_pred eEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEE
Q 011813 346 LGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVV 388 (477)
Q Consensus 346 lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l 388 (477)
||++.+++.++..+.....|+++... ++...|.|.+
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~~-------g~~~~~~~~~ 114 (115)
T cd04040 79 LGSAYIDLSDLEPEETTELTLPLDGQ-------GGGKLGAVFL 114 (115)
T ss_pred eEEEEEEHHHcCCCCcEEEEEECcCC-------CCccCceEEc
Confidence 99999999999988888899988542 3556676653
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.9e-17 Score=142.59 Aligned_cols=106 Identities=37% Similarity=0.552 Sum_probs=90.6
Q ss_pred cccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCccc--------------------------CceeeeeeCCCCC
Q 011813 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL--------------------------PWKKTTVKKKNLN 311 (477)
Q Consensus 258 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~--------------------------~~~kT~v~~~t~n 311 (477)
....+.+.|.|+|++|++|...|..|.+||||++++.+... ..++|+++++|.|
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 45678999999999999999999999999999999965321 2368999999999
Q ss_pred CeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 011813 312 PEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (477)
Q Consensus 312 P~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l 368 (477)
|.|||+|.|.+.+...+.|.|+|||++ |++||++.++++++.. .....|++|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999999998766789999999997 8899999999999983 345666654
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-17 Score=142.53 Aligned_cols=110 Identities=25% Similarity=0.276 Sum_probs=90.4
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEeec--CCCCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v~~--~~~~~L~v~V 334 (477)
.....+.|.|+|++|+||+..+..|.+||||++++.++. ..++||+++++|+||+|||+|.|.++. .....|.|+|
T Consensus 10 Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V 89 (136)
T cd08406 10 YLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTV 89 (136)
T ss_pred EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEE
Confidence 445568899999999999999988999999999996543 335689999999999999999999864 3467899999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
||+|..+++++||++.++... .+...++|.++..
T Consensus 90 ~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~ 123 (136)
T cd08406 90 AESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQMLA 123 (136)
T ss_pred EeCCCCCCCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence 999999999999999997664 3444555655543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.7e-17 Score=145.46 Aligned_cols=110 Identities=34% Similarity=0.336 Sum_probs=93.6
Q ss_pred cCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEee---cCCCCeEEEEE
Q 011813 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVK---EPESQILQLQV 334 (477)
Q Consensus 260 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~---~~~~~~L~v~V 334 (477)
..+.|.|.|+|++|+||+..+..+.+||||++++.+. ....++|+++++|.||.|||+|.|.+. +.....|.|+|
T Consensus 23 ~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V 102 (162)
T cd04020 23 KPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTV 102 (162)
T ss_pred CCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEE
Confidence 4478999999999999999998899999999998543 234579999999999999999999853 22346799999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~ 369 (477)
||++.+++|++||++.+++.++........|+++.
T Consensus 103 ~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 103 WDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred EeCCCCCCCceEEEEEEeCCccccCCCccccccCC
Confidence 99999999999999999999998776677777653
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.3e-17 Score=139.16 Aligned_cols=115 Identities=22% Similarity=0.343 Sum_probs=96.1
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeC-CCCCCeeeeEEEEEeecCC----CCeEEEEEEecCC
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEPE----SQILQLQVFDWDK 339 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~-~t~nP~WnE~f~f~v~~~~----~~~L~v~V~d~d~ 339 (477)
.|+|+|++|++|+..+..+.+||||++++++. ..++|++.. ++.||.|||.|.|.+.... ...|.|+|||++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~--~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPS--HKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCC--cccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 48999999999999888899999999999872 234888875 6899999999999997653 6789999999998
Q ss_pred CCCCCeeEEEEEECcccCCCCc-----eEEEEecccccCCCCCCCCccceEEEE
Q 011813 340 VGGHDRLGMQLVPLKLLTPHET-----KEFTLDLLKHTNISDPKDMKQRGKIVV 388 (477)
Q Consensus 340 ~~~d~~lG~~~v~L~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~~~G~l~l 388 (477)
.++|++||++.++|.++..+.. ...|+++... +++.+|.|++
T Consensus 79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~-------~g~~~G~~~~ 125 (125)
T cd04051 79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRP-------SGKPQGVLNF 125 (125)
T ss_pred CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECC-------CCCcCeEEeC
Confidence 8899999999999999986543 3677777642 3778899874
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.4e-17 Score=135.87 Aligned_cols=101 Identities=30% Similarity=0.410 Sum_probs=86.5
Q ss_pred EEEEEEEccccccccc-cCCCCcEEEEEEcCcccCceeeeeeCCCCCCee-eeEEEEEeecC--CCCeEEEEEEecCCCC
Q 011813 266 LHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEW-NENFKLVVKEP--ESQILQLQVFDWDKVG 341 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~-~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~W-nE~f~f~v~~~--~~~~L~v~V~d~d~~~ 341 (477)
|.|+|++|++|+..+. .+.+||||++++++. .++|++++++.||.| ||+|.|.+... ....|.|+|||++..+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~---~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGST---TYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCe---eEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 6899999999998884 688999999999863 468999999999999 99999998753 2468999999999999
Q ss_pred CCCeeEEEEEECcccCC---CCceEEEEecc
Q 011813 342 GHDRLGMQLVPLKLLTP---HETKEFTLDLL 369 (477)
Q Consensus 342 ~d~~lG~~~v~L~~l~~---~~~~~~~~~l~ 369 (477)
+|++||++.+++.++.. +.....|++|.
T Consensus 78 ~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 78 ANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 99999999999999986 33456677663
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.7e-17 Score=138.24 Aligned_cols=120 Identities=29% Similarity=0.421 Sum_probs=95.4
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCC
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~ 344 (477)
+|+|+|++|++|+..|..|.+||||++++++... ..+|+++++|.||+|||+|.|.+..+..+.|.|+|||+|..++|+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~-~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKI-NDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeec-cceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence 4799999999999999889999999999987643 357888889999999999999987666789999999999999999
Q ss_pred eeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 345 ~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
+||++.+++++... ..++++.-+.+ +....|.++.+-++.|
T Consensus 80 ~iG~~~i~l~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 120 (124)
T cd04037 80 LIGETVIDLEDRFF-SKHRATCGLPP--------TYEESGPNQWRDSLKP 120 (124)
T ss_pred eeEEEEEeeccccc-chHHHhccCCC--------cccccCceecCcccCc
Confidence 99999999997754 22222322211 2336677777766655
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.5e-17 Score=138.03 Aligned_cols=104 Identities=36% Similarity=0.555 Sum_probs=90.4
Q ss_pred eEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeC-CCCCCeeeeEEEEEeecC---CCCeEEEEEEecCC
Q 011813 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEP---ESQILQLQVFDWDK 339 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~-~t~nP~WnE~f~f~v~~~---~~~~L~v~V~d~d~ 339 (477)
|.|.|+|++|++|+..+..+.+||||+++++++. ++|++.+ ++.||.|||+|.|.+... ..+.|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~---~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQE---RKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEe---eeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 7899999999999998888899999999997643 4777776 489999999999999875 25789999999999
Q ss_pred CCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 011813 340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 340 ~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
.++|++||++.+++.++..+.....|+.+.+
T Consensus 78 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 78 FSDDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CCCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 8899999999999999987777777777644
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.5e-17 Score=141.03 Aligned_cols=110 Identities=25% Similarity=0.316 Sum_probs=90.5
Q ss_pred ccCCceEEEEEEEEccccccccc--cCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeec--CCCCeEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDF--LGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQL 332 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~--~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~--~~~~~L~v 332 (477)
.....|.|.|+|++|+||+..|. .+.+||||++++.++ +..++||+++++++||+|||+|.|.++. .....|.|
T Consensus 10 Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~ 89 (138)
T cd08407 10 YLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVEL 89 (138)
T ss_pred EeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEE
Confidence 34556889999999999999883 355899999999875 3346799999999999999999999874 33678999
Q ss_pred EEEecCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 011813 333 QVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 333 ~V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
+|||+|.++++++||++.+++.. .+...++|.++..
T Consensus 90 ~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~ 125 (138)
T cd08407 90 EVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLD 125 (138)
T ss_pred EEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHh
Confidence 99999999999999999999975 4445556666543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-16 Score=133.61 Aligned_cols=100 Identities=19% Similarity=0.275 Sum_probs=82.6
Q ss_pred ceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCC
Q 011813 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~ 342 (477)
+|.|.|+|++|++|+.++ ..||||++++++++ .+|++.++ .||.|||+|.|.+.+.. ..|.|+|||+|.+ .
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k---~kT~v~~~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~-~ 71 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVK---STTIAVRG-SQPCWEQDFMFEINRLD-LGLVIELWNKGLI-W 71 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEE---eEeeECCC-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCc-C
Confidence 378999999999997654 45999999998754 48888877 49999999999997644 4599999999854 8
Q ss_pred CCeeEEEEEECcccCCCCce--EEEEecccc
Q 011813 343 HDRLGMQLVPLKLLTPHETK--EFTLDLLKH 371 (477)
Q Consensus 343 d~~lG~~~v~L~~l~~~~~~--~~~~~l~~~ 371 (477)
||+||++.++|+++..+... ..|++|...
T Consensus 72 DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 72 DTLVGTVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred CCceEEEEEEhHHcccCCCCCCCccEecChH
Confidence 99999999999998866544 677777654
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.69 E-value=7e-16 Score=133.54 Aligned_cols=118 Identities=24% Similarity=0.374 Sum_probs=95.0
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEEcCccc----------CceeeeeeCCCCCCee-eeEEEEEeecCCCCeEEEE
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL----------PWKKTTVKKKNLNPEW-NENFKLVVKEPESQILQLQ 333 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~----------~~~kT~v~~~t~nP~W-nE~f~f~v~~~~~~~L~v~ 333 (477)
+..|++++|+||+ ++..|++||||++++.+... +.++|+++++|+||+| ||+|.|.+. ..+.|.++
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence 4578999999998 67789999999999975432 3579999999999999 999999985 35689999
Q ss_pred EEecCCCCC---CCeeEEEEEECcccCCCC---ceEEEEecccccCCCCCCCCccceEEEEEE
Q 011813 334 VFDWDKVGG---HDRLGMQLVPLKLLTPHE---TKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (477)
Q Consensus 334 V~d~d~~~~---d~~lG~~~v~L~~l~~~~---~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 390 (477)
|||++..++ +++||++.+++.++..+. ....++++.++. ..+..+|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~-----~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT-----PTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC-----CCCcEEEEEEEEe
Confidence 999875443 799999999999997543 355777776542 2467889998875
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-16 Score=138.51 Aligned_cols=93 Identities=45% Similarity=0.708 Sum_probs=84.6
Q ss_pred ceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCC
Q 011813 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~ 342 (477)
.|.|+|+|++|++|+..+. +.+||||+++++++. ++|++++++.||+|||+|.|.+.++ ...+.|+|||++.+++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~---~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~ 75 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQK---VKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSK 75 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEE---EEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCC
Confidence 4899999999999998887 889999999998654 5899999999999999999999876 6789999999999999
Q ss_pred CCeeEEEEEECcccCCCC
Q 011813 343 HDRLGMQLVPLKLLTPHE 360 (477)
Q Consensus 343 d~~lG~~~v~L~~l~~~~ 360 (477)
|++||++.+++.++....
T Consensus 76 dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 76 DDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCEEEEEEEEHHHhhhhh
Confidence 999999999999987553
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.2e-17 Score=139.93 Aligned_cols=110 Identities=35% Similarity=0.423 Sum_probs=91.7
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V 334 (477)
.....|.|.|+|++|++|+..+..|.+||||++++.+. ....++|++++++.||+|||+|.|.+... ....|.|+|
T Consensus 8 y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V 87 (133)
T cd08384 8 YNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITV 87 (133)
T ss_pred EcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEE
Confidence 34567999999999999999998899999999999753 23457999999999999999999998643 356899999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
||+|..++|++||++.+++.. .++....|+++..
T Consensus 88 ~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 88 WDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred EeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 999988899999999999986 3344556776654
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-16 Score=136.30 Aligned_cols=101 Identities=35% Similarity=0.511 Sum_probs=87.3
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcc----cCceeeeeeCCCCCCeeeeEEEEEeecC----CCCeE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKKKNLNPEWNENFKLVVKEP----ESQIL 330 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~----~~~~kT~v~~~t~nP~WnE~f~f~v~~~----~~~~L 330 (477)
.....+.|+|+|++|++|+..+..+.+||||++++.+.. ...++|+++++|.||+|||+|.|.+... ....|
T Consensus 11 y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l 90 (133)
T cd04009 11 YRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALL 90 (133)
T ss_pred EcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEE
Confidence 344568899999999999998888999999999997543 3457999999999999999999998652 35689
Q ss_pred EEEEEecCCCCCCCeeEEEEEECcccCCC
Q 011813 331 QLQVFDWDKVGGHDRLGMQLVPLKLLTPH 359 (477)
Q Consensus 331 ~v~V~d~d~~~~d~~lG~~~v~L~~l~~~ 359 (477)
.++|||++..++|++||++.++|+++..-
T Consensus 91 ~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 91 LFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred EEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 99999999999999999999999998743
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.6e-16 Score=165.20 Aligned_cols=130 Identities=28% Similarity=0.456 Sum_probs=109.1
Q ss_pred CceEEEEEEEEccccccccc------------------------------------------cCCCCcEEEEEEcCcccC
Q 011813 262 PVGILHVKVVRASKLLKKDF------------------------------------------LGTSDPYVKLSLTGEKLP 299 (477)
Q Consensus 262 ~~G~L~V~v~~A~~L~~~d~------------------------------------------~g~~dpyv~v~l~~~~~~ 299 (477)
-.|.|.++|.+|++|+.+|. .+++||||++.+++++
T Consensus 12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~r-- 89 (868)
T PLN03008 12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQAT-- 89 (868)
T ss_pred eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcc--
Confidence 35888999999998875221 2467999999997654
Q ss_pred ceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCC
Q 011813 300 WKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKD 379 (477)
Q Consensus 300 ~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~ 379 (477)
..||++++++.||+|||+|.|.+.++. ..|.|+|||+|.++ +++||++.+||+++..++..+.|+++..... +.
T Consensus 90 v~RTrVi~n~~NPvWNE~F~f~vah~~-s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~----kp 163 (868)
T PLN03008 90 LARTRVLKNSQEPLWDEKFNISIAHPF-AYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASG----KP 163 (868)
T ss_pred eeeEEeCCCCCCCCcceeEEEEecCCC-ceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCC----CC
Confidence 358999999999999999999998754 58999999999986 5899999999999999999999999977543 23
Q ss_pred CccceEEEEEEEEEecccCc
Q 011813 380 MKQRGKIVVELTYVPFKEDS 399 (477)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~ 399 (477)
.+..|+|++++.|.|+..+.
T Consensus 164 ~k~~~kl~v~lqf~pv~~~~ 183 (868)
T PLN03008 164 PKAETAIFIDMKFTPFDQIH 183 (868)
T ss_pred CCCCcEEEEEEEEEEccccc
Confidence 55678999999999988864
|
|
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.8e-16 Score=137.30 Aligned_cols=93 Identities=35% Similarity=0.592 Sum_probs=81.0
Q ss_pred EEEEEEEEccccccccccC--------------CCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecC-CCCe
Q 011813 265 ILHVKVVRASKLLKKDFLG--------------TSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP-ESQI 329 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g--------------~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~-~~~~ 329 (477)
.|.|+|++|++|+.+|..+ .+||||++.+++.+ .+|++++++.||+|||+|.|.+..+ ..+.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~---~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~ 77 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQK---VKTSVKKNSYNPEWNEQIVFPEMFPPLCER 77 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEe---eecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence 3789999999999988543 68999999999765 3899999999999999999997543 2568
Q ss_pred EEEEEEecCCCCCCCeeEEEEEECcccCCCC
Q 011813 330 LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360 (477)
Q Consensus 330 L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~~ 360 (477)
|.++|||+|..++|++||++.+++.++....
T Consensus 78 l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 78 IKIQIRDWDRVGNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEEEEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence 9999999999999999999999999987643
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.3e-16 Score=131.83 Aligned_cols=103 Identities=27% Similarity=0.463 Sum_probs=89.6
Q ss_pred eEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCC
Q 011813 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d 343 (477)
|.|+|+|++|++|+..+..+.+||||++++++.. .++|++++++.||.|||+|.|.+... .+.|.|+|||++..++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d 77 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIV--KGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKD 77 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEE--eeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence 7899999999999999888999999999997542 35899999999999999999988654 47899999999999999
Q ss_pred CeeEEEEEECcccCCCCceEEEEeccc
Q 011813 344 DRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 344 ~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
++||++.+++.++..+ ..+.|+.+..
T Consensus 78 ~~IG~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 78 RSLGSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred CeeeEEEEeHHHhhCC-CCCceEEecC
Confidence 9999999999999876 5566666543
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.1e-16 Score=135.59 Aligned_cols=106 Identities=30% Similarity=0.399 Sum_probs=91.5
Q ss_pred EEEEEEEccccccccccCCCCcEEEEEEcCc-ccCceeeeeeCCCCCCeeeeEEEEEeecC---------------CCCe
Q 011813 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGE-KLPWKKTTVKKKNLNPEWNENFKLVVKEP---------------ESQI 329 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~-~~~~~kT~v~~~t~nP~WnE~f~f~v~~~---------------~~~~ 329 (477)
|+|+|++|++|+.+ ..+.+||||++++++. ....++|++++++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 6789999999999842 22346999999999999999999998765 4568
Q ss_pred EEEEEEecCCCCCCCeeEEEEEECcccCCCCceEEEEeccccc
Q 011813 330 LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHT 372 (477)
Q Consensus 330 L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~ 372 (477)
|.|+|||++..+++++||++.+++.++........|++|.+.-
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 9999999998889999999999999998777778888887653
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-16 Score=136.04 Aligned_cols=111 Identities=22% Similarity=0.320 Sum_probs=91.5
Q ss_pred cccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcc---cCceeeeeeCCCCCCeeeeEEEEEeec--CCCCeEEE
Q 011813 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK---LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQL 332 (477)
Q Consensus 258 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~---~~~~kT~v~~~t~nP~WnE~f~f~v~~--~~~~~L~v 332 (477)
..+...+.|.|+|++|+||+..+..|.+||||++++.+.. ..++||++++++.||+|||+|.|.+.. .....|.|
T Consensus 9 ~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~ 88 (138)
T cd08408 9 EYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF 88 (138)
T ss_pred EEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence 3566779999999999999999988999999999997532 235699999999999999999999873 34678999
Q ss_pred EEEecCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 011813 333 QVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (477)
Q Consensus 333 ~V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~ 369 (477)
+|||++..+++++||++.+++.....+ ..++|.++.
T Consensus 89 ~V~~~~~~~~~~~iG~v~l~~~~~~~~-~~~hW~~~l 124 (138)
T cd08408 89 SVYNKRKMKRKEMIGWFSLGLNSSGEE-EEEHWNEMK 124 (138)
T ss_pred EEEECCCCCCCcEEEEEEECCcCCCch-HHHHHHHHH
Confidence 999999999999999999988754422 234566554
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-16 Score=138.33 Aligned_cols=108 Identities=31% Similarity=0.401 Sum_probs=89.5
Q ss_pred cCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEEE
Q 011813 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVF 335 (477)
Q Consensus 260 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V~ 335 (477)
....+.|.|+|++|++|+..|..|.+||||++++.+.. ...++|+++++|.||.|||+|.|.+... ....|.|+||
T Consensus 11 ~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~ 90 (136)
T cd08404 11 QPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVL 90 (136)
T ss_pred eCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 44568899999999999999988999999999996432 2356899999999999999999998632 3457999999
Q ss_pred ecCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 011813 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (477)
Q Consensus 336 d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~ 369 (477)
|+|.++++++||++.+++.. .+.....|.++.
T Consensus 91 d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~ 122 (136)
T cd08404 91 DSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVC 122 (136)
T ss_pred ECCCCCCCccEEEEEECCcC--CCchHHHHHHHH
Confidence 99999999999999999988 344455666653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.4e-16 Score=134.96 Aligned_cols=109 Identities=30% Similarity=0.405 Sum_probs=89.9
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcC--cccCceeeeeeCCCCCCeeeeEEEEEeec--CCCCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~--~~~~~~kT~v~~~t~nP~WnE~f~f~v~~--~~~~~L~v~V 334 (477)
.....|.|.|+|++|+||+..+..|.+||||++++.+ .....++|++++++.||.|||+|.|.+.. .....|.|+|
T Consensus 10 y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v 89 (136)
T cd08405 10 YNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 4556799999999999999988889999999999843 23345689999999999999999999763 2356899999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~ 369 (477)
||++.+++|++||++.+++.+. +.....|.++.
T Consensus 90 ~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~ 122 (136)
T cd08405 90 MDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDML 122 (136)
T ss_pred EECCCCCCCcEeEEEEECCccC--CchHHHHHHHH
Confidence 9999999999999999999886 33344555554
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.4e-16 Score=133.75 Aligned_cols=110 Identities=18% Similarity=0.204 Sum_probs=88.1
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcC--cccCceeeeeeCCCC-CCeeeeEEEEEeecCC-CCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNL-NPEWNENFKLVVKEPE-SQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~--~~~~~~kT~v~~~t~-nP~WnE~f~f~v~~~~-~~~L~v~V 334 (477)
.....|.|+|+|++|+||++.+..+.+||||++++.. .+..++||+++++|. ||.|||+|.|.++... ...|.++|
T Consensus 9 Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v 88 (135)
T cd08692 9 FQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKL 88 (135)
T ss_pred ecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEE
Confidence 4456799999999999999876567779999999853 344568999999996 6999999999997433 45788999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~ 369 (477)
||++..+++++||++.++.+... +...++|.++.
T Consensus 89 ~d~~~~~~n~~IG~v~lG~~~~~-~~~~~hW~~m~ 122 (135)
T cd08692 89 YSRSSVRRKHFLGQVWISSDSSS-SEAVEQWKDTI 122 (135)
T ss_pred EeCCCCcCCceEEEEEECCccCC-chhhhhHHHHH
Confidence 99999999999999999997642 23345666654
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.1e-16 Score=129.26 Aligned_cols=101 Identities=26% Similarity=0.336 Sum_probs=85.6
Q ss_pred ccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCeeEEEEEECcccCCC-
Q 011813 281 FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH- 359 (477)
Q Consensus 281 ~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~- 359 (477)
.+|.+||||+++++++. .++|++++++.||.|||+|.|.+.+.....|.|+|||++.. +|++||++.++|+++...
T Consensus 9 ~~G~~dPYv~v~v~~~~--~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 9 KTGLLSPYAELYLNGKL--VYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred cCCCCCceEEEEECCEE--EEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence 46889999999998643 35899999999999999999999876677899999999988 899999999999998543
Q ss_pred CceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 360 ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
.....|++|.. ...|+|++++.|.|
T Consensus 86 ~~~~~w~~L~~----------~~~G~i~~~~~~~p 110 (111)
T cd04052 86 SVGQQWFPLSG----------NGQGRIRISALWKP 110 (111)
T ss_pred hccceeEECCC----------CCCCEEEEEEEEec
Confidence 34567887742 35799999999998
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-16 Score=137.22 Aligned_cols=109 Identities=35% Similarity=0.506 Sum_probs=89.1
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V 334 (477)
.....|.|+|+|++|++|++.+..|.+||||++++.+. ....++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 9 y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v 88 (134)
T cd08403 9 YLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAV 88 (134)
T ss_pred EcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 45567999999999999999998899999999999643 33457899999999999999999998632 235699999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~ 369 (477)
||++..++|++||++.+++.. .+.....|.++.
T Consensus 89 ~d~~~~~~~~~IG~~~l~~~~--~~~~~~~w~~~~ 121 (134)
T cd08403 89 VDYDRVGHNELIGVCRVGPNA--DGQGREHWNEML 121 (134)
T ss_pred EECCCCCCCceeEEEEECCCC--CCchHHHHHHHH
Confidence 999999999999999999873 333445565554
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=128.19 Aligned_cols=97 Identities=28% Similarity=0.374 Sum_probs=82.5
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCC----CCeEEEEEEecCCC
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE----SQILQLQVFDWDKV 340 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~----~~~L~v~V~d~d~~ 340 (477)
.|+|+|++|++|+ .+.+||||++++++++ ++|++++++.||.|||+|.|.+..+. ...|.|+|||++.+
T Consensus 5 ~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~---~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~ 77 (111)
T cd04011 5 QVRVRVIEARQLV----GGNIDPVVKVEVGGQK---KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77 (111)
T ss_pred EEEEEEEEcccCC----CCCCCCEEEEEECCEe---eeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence 5899999999998 4789999999999754 48999999999999999999975432 46899999999998
Q ss_pred CCCCeeEEEEEECcccCCCCc---eEEEEec
Q 011813 341 GGHDRLGMQLVPLKLLTPHET---KEFTLDL 368 (477)
Q Consensus 341 ~~d~~lG~~~v~L~~l~~~~~---~~~~~~l 368 (477)
++|++||++.++|+++..+.. ...|++|
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L 108 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLL 108 (111)
T ss_pred ccCCccEEEEECCccccCCCCCcceEEEEEe
Confidence 899999999999999976533 3456665
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-15 Score=128.80 Aligned_cols=118 Identities=29% Similarity=0.450 Sum_probs=93.9
Q ss_pred eEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCC
Q 011813 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d 343 (477)
..|+|+|.+|+ |...+..+.+||||+++++++ ..++|++++++.||.|||+|.|.+.. .+.|.|+|||++..+.|
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~--~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~ 76 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQ--PPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKAD 76 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCc--ccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCC
Confidence 36899999998 555555788999999999865 34699999999999999999999863 57899999999999999
Q ss_pred CeeEEEEEECcccCCCCc-----eEEEEecccccCCCCCCCCccceEEEEEE
Q 011813 344 DRLGMQLVPLKLLTPHET-----KEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (477)
Q Consensus 344 ~~lG~~~v~L~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 390 (477)
++||++.++|.++..... ...|+++.+..+ ......|+|++++
T Consensus 77 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~G~~~~~~ 124 (125)
T cd04021 77 VLLGEASLDLSDILKNHNGKLENVKLTLNLSSENK----GSSVKVGELTVIL 124 (125)
T ss_pred cEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCC----CcceeeeeEEEEe
Confidence 999999999999875432 234676654211 0346789998875
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.8e-16 Score=130.94 Aligned_cols=100 Identities=31% Similarity=0.442 Sum_probs=86.8
Q ss_pred EEEccccccccccCCCCcEEEEEEcCcc----cCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCC----CC
Q 011813 270 VVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDK----VG 341 (477)
Q Consensus 270 v~~A~~L~~~d~~g~~dpyv~v~l~~~~----~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~----~~ 341 (477)
.++|++|+..+..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+.....+.|.++|||+|. .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 4789999999988999999999998754 124699999999999999999998764456789999999997 78
Q ss_pred CCCeeEEEEEECcccCCCCceEEEEecc
Q 011813 342 GHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (477)
Q Consensus 342 ~d~~lG~~~v~L~~l~~~~~~~~~~~l~ 369 (477)
+|++||++.+++.++..+.....+++|.
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 9999999999999999887777888773
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-15 Score=130.01 Aligned_cols=109 Identities=37% Similarity=0.499 Sum_probs=91.9
Q ss_pred cccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeec---CCCCeEEE
Q 011813 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQL 332 (477)
Q Consensus 258 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~---~~~~~L~v 332 (477)
..+...+.|+|+|++|++|+..+..+.+||||++++.+. ....++|++++++.||.|||+|.|.... .....+.+
T Consensus 9 ~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~ 88 (123)
T cd04035 9 LYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRL 88 (123)
T ss_pred EEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEE
Confidence 345556899999999999999888889999999998542 2345799999999999999999996322 23568999
Q ss_pred EEEecCCCCCCCeeEEEEEECcccCCCCceEEEEe
Q 011813 333 QVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLD 367 (477)
Q Consensus 333 ~V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~ 367 (477)
+|||++.. .+++||++.++|+++..++.+++++.
T Consensus 89 ~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 89 LVLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred EEEEcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence 99999988 88999999999999999888888765
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.9e-16 Score=134.73 Aligned_cols=110 Identities=35% Similarity=0.493 Sum_probs=90.0
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcC--cccCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~--~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V 334 (477)
.....|.|+|+|++|++|+..+..|.+||||++++.+ .....++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v 89 (136)
T cd08402 10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 4566799999999999999999889999999999964 233456899999999999999999998632 234799999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
||++.+++|++||++.+++... +.....|.++..
T Consensus 90 ~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~ 123 (136)
T cd08402 90 LDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLA 123 (136)
T ss_pred EeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHh
Confidence 9999999999999999999764 334455655543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-16 Score=136.92 Aligned_cols=111 Identities=27% Similarity=0.289 Sum_probs=92.4
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeec--CCCCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~--~~~~~L~v~V 334 (477)
.....+.|.|+|++|+||+..+ .+.+||||++++.+. ...+++|++++++.||+|||+|.|.+.. .....|.|+|
T Consensus 10 y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V 88 (137)
T cd08409 10 YNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSV 88 (137)
T ss_pred ECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEE
Confidence 3455689999999999999988 788999999998754 2245689999999999999999999863 3356899999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
||++..+++++||++.++......+...++|.++..
T Consensus 89 ~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 89 MQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred EeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 999999999999999999776666666667776654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-15 Score=132.95 Aligned_cols=110 Identities=26% Similarity=0.399 Sum_probs=86.4
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeec--CCCCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~--~~~~~L~v~V 334 (477)
.....|.|+|+|++|++|+..|..|.+||||++++.+. ....++|+++++|.||.|||+|.|.+.. .....|.|+|
T Consensus 9 y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V 88 (135)
T cd08410 9 YLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTV 88 (135)
T ss_pred ECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEE
Confidence 34556899999999999999998899999999998432 2345789999999999999999999853 2344799999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~ 369 (477)
||+|..++|++||++.+.......+ ....|..+.
T Consensus 89 ~d~d~~~~~~~iG~~~l~~~~~~~~-~~~~W~~l~ 122 (135)
T cd08410 89 YGHNVKSSNDFIGRIVIGQYSSGPS-ETNHWRRML 122 (135)
T ss_pred EeCCCCCCCcEEEEEEEcCccCCch-HHHHHHHHH
Confidence 9999999999999998765333321 234455443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.9e-15 Score=123.21 Aligned_cols=95 Identities=24% Similarity=0.378 Sum_probs=75.6
Q ss_pred EEEEEEEccccccccccCCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEec------
Q 011813 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDW------ 337 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~------ 337 (477)
|.|+|++|+||+ +.+||||++.+++.. ....+|+++++|+||+|||+|.|.+.. .+.|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 689999999996 458999999997642 345799999999999999999999963 67999999998
Q ss_pred -CCCCCCCeeEEEEEECc--ccCCCCceEEEEe
Q 011813 338 -DKVGGHDRLGMQLVPLK--LLTPHETKEFTLD 367 (477)
Q Consensus 338 -d~~~~d~~lG~~~v~L~--~l~~~~~~~~~~~ 367 (477)
|..+.|+++|++.+.|+ .+.....+...+.
T Consensus 74 ~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~ 106 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVIS 106 (118)
T ss_pred ccccCcccEEEEEEEEECHHHhccCCeeEEEEE
Confidence 45678999988887765 4444444444443
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.9e-15 Score=127.63 Aligned_cols=126 Identities=16% Similarity=0.205 Sum_probs=99.8
Q ss_pred CceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCC
Q 011813 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (477)
Q Consensus 262 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~ 341 (477)
-...|.|.|++|++|+.++ +|||.+.+++... .||+++.++.||.|+|+|+|..... ...+.|.||+.+...
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~v--aRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~ 80 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLY--ARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKK 80 (146)
T ss_pred EEEEEEEEEEEccCCCCcC-----CceEEEEECCEEE--EEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCcc
Confidence 4577999999999998865 8999999997654 5999999999999999999975432 467999998765322
Q ss_pred ----CCCeeEEEEEECcccCCCCceEEEEecccccCCC---CCCCCccceEEEEEEEEEec
Q 011813 342 ----GHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNIS---DPKDMKQRGKIVVELTYVPF 395 (477)
Q Consensus 342 ----~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~---~~~~~~~~G~l~l~l~y~p~ 395 (477)
++++||.+.||+.++..+...+.|+++....... ........+.|+++++|.+.
T Consensus 81 ~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 81 KKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred ccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 5789999999999999988889999987542110 00012455799999999984
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-14 Score=123.33 Aligned_cols=114 Identities=26% Similarity=0.353 Sum_probs=87.9
Q ss_pred EEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCC--CCeEEEEEEecCCCCCC
Q 011813 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQVFDWDKVGGH 343 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~--~~~L~v~V~d~d~~~~d 343 (477)
|+|+|++|++|+.. +.+||||+++++++. .++|+++++ .||.|||+|.|.+.... ...|.+.+||.+...++
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~--~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVE--VARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD 75 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEE--eEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe
Confidence 78999999999976 789999999998643 358999888 99999999999987532 34678888888766556
Q ss_pred CeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 011813 344 DRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (477)
Q Consensus 344 ~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (477)
..+|.+ ++..+..+...+.|++|.+.- ......|+|++++.|
T Consensus 76 ~~~g~v--~l~~~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~~~~ 117 (117)
T cd08383 76 IVIGKV--ALSKLDLGQGKDEWFPLTPVD-----PDSEVQGSVRLRARY 117 (117)
T ss_pred eEEEEE--EecCcCCCCcceeEEECccCC-----CCCCcCceEEEEEEC
Confidence 666655 455555566778899885431 124578999999987
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.2e-15 Score=127.89 Aligned_cols=106 Identities=35% Similarity=0.501 Sum_probs=91.1
Q ss_pred eEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeecC-CCCeEEEEEEecCCC
Q 011813 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP-ESQILQLQVFDWDKV 340 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~~-~~~~L~v~V~d~d~~ 340 (477)
+.|+|+|++|++|+..+..+.+||||++.+.+. ....++|++++++.||.|||+|.|.+... ..+.|.++|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 889999999999999888889999999999742 22357899999999999999999998653 256899999999988
Q ss_pred CCCCeeEEEEEECcccCCCCceEEEEeccc
Q 011813 341 GGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 341 ~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
+++++||++.++|.++... ....|++|..
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 8999999999999999854 6678888753
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-15 Score=132.25 Aligned_cols=110 Identities=36% Similarity=0.416 Sum_probs=92.4
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeecCC--CCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~--~~~L~v~V 334 (477)
.....+.|.|+|++|++|+..+..+.+||||++++.+. ....++|++++++.||.|||+|.|.+.... ...|.|+|
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v 88 (134)
T cd00276 9 YLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITV 88 (134)
T ss_pred eeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEE
Confidence 34456899999999999999888889999999999764 233568999999999999999999987542 57899999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
||++..+++++||++.+++++ .+.....|+++..
T Consensus 89 ~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~ 122 (134)
T cd00276 89 VDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLA 122 (134)
T ss_pred EecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHh
Confidence 999988899999999999999 4555667777654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.1e-14 Score=122.36 Aligned_cols=119 Identities=30% Similarity=0.416 Sum_probs=93.9
Q ss_pred EEEEEEEEcccccccc--ccCCCCcEEEEEEcCcc---cCceeeeeeCCCC-CCeeeeEEEEEeecCCCCeEEEEEEecC
Q 011813 265 ILHVKVVRASKLLKKD--FLGTSDPYVKLSLTGEK---LPWKKTTVKKKNL-NPEWNENFKLVVKEPESQILQLQVFDWD 338 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d--~~g~~dpyv~v~l~~~~---~~~~kT~v~~~t~-nP~WnE~f~f~v~~~~~~~L~v~V~d~d 338 (477)
.|+|+|++|++|+..+ ..+.+||||++++.+.. ..+++|+++.++. ||.|||+|.|.+..+....|.++|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999887 57889999999996432 3457899887765 9999999999998666567999999999
Q ss_pred CCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 011813 339 KVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (477)
Q Consensus 339 ~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (477)
.. +|++||++.++++++..+. .++++.... ......|.|.+.++.
T Consensus 83 ~~-~~~~iG~~~~~l~~l~~g~---~~~~l~~~~-----~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 SG-DDDFLGQACLPLDSLRQGY---RHVPLLDSK-----GEPLELSTLFVHIDI 127 (128)
T ss_pred CC-CCcEeEEEEEEhHHhcCce---EEEEecCCC-----CCCCcceeEEEEEEE
Confidence 87 8999999999999996542 345554320 113456888888765
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-14 Score=121.97 Aligned_cols=96 Identities=32% Similarity=0.533 Sum_probs=79.7
Q ss_pred EEEEEccccccccccCCCCcEEEEEEcCcc---cCceeeeeeCCCCCCeeeeEEEEEeecCC----CCeEEEEEEecCCC
Q 011813 268 VKVVRASKLLKKDFLGTSDPYVKLSLTGEK---LPWKKTTVKKKNLNPEWNENFKLVVKEPE----SQILQLQVFDWDKV 340 (477)
Q Consensus 268 V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~---~~~~kT~v~~~t~nP~WnE~f~f~v~~~~----~~~L~v~V~d~d~~ 340 (477)
+-.++|++|+..|..|.+||||++++.++. ...++|++++++.||+|| +|.|.+.+.. .+.|.|+|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 345699999999999999999999987642 234799999999999999 6888764322 57899999999999
Q ss_pred CCCCeeEEEEEECcccCCCCceEE
Q 011813 341 GGHDRLGMQLVPLKLLTPHETKEF 364 (477)
Q Consensus 341 ~~d~~lG~~~v~L~~l~~~~~~~~ 364 (477)
++|++||++.++++++..+...++
T Consensus 83 ~~d~~iG~~~~~l~~l~~~~~~~~ 106 (110)
T cd04047 83 GKHDLIGEFETTLDELLKSSPLEF 106 (110)
T ss_pred CCCcEEEEEEEEHHHHhcCCCceE
Confidence 999999999999999986655443
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-15 Score=147.56 Aligned_cols=108 Identities=32% Similarity=0.485 Sum_probs=91.7
Q ss_pred CCceEEEEEEEEccccccccccCCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEeecC-CCCeEEEEEEec
Q 011813 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP-ESQILQLQVFDW 337 (477)
Q Consensus 261 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v~~~-~~~~L~v~V~d~ 337 (477)
.....|+|+|.+|+||.++|.+|.|||||++.+-++. ..+++|++++.|+||+|||+|.|.+... ....|.++|||+
T Consensus 177 ~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDW 256 (683)
T KOG0696|consen 177 IKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDW 256 (683)
T ss_pred ecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecc
Confidence 3457799999999999999999999999999997653 3457899999999999999999998633 367899999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 011813 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (477)
Q Consensus 338 d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~ 369 (477)
|+.+++|++|..++.+++|.... ..-|+.++
T Consensus 257 DrTsRNDFMGslSFgisEl~K~p-~~GWyKlL 287 (683)
T KOG0696|consen 257 DRTSRNDFMGSLSFGISELQKAP-VDGWYKLL 287 (683)
T ss_pred cccccccccceecccHHHHhhcc-hhhHHHHh
Confidence 99999999999999999997642 34455544
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-14 Score=165.85 Aligned_cols=123 Identities=21% Similarity=0.371 Sum_probs=105.2
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCC-CCeEEEEEEec
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDW 337 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~-~~~L~v~V~d~ 337 (477)
+..-.|.|+|+|++|+||. +..|.+||||++.++++.. +||++++++.||+|||+|.|.+.++. ++.++++|||+
T Consensus 1975 ~~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~--~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~ 2050 (2102)
T PLN03200 1975 LQCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPP--RQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSK 2050 (2102)
T ss_pred HhhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCc--ccccccCCCCCCCcccceeeeecCCCCCCceEEEEEec
Confidence 4456899999999999998 4468999999999997533 48999999999999999999988765 46799999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceE---EEEEEEEEe
Q 011813 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGK---IVVELTYVP 394 (477)
Q Consensus 338 d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~---l~l~l~y~p 394 (477)
|.+++| .+|.+.+++.++..++....|+++.+ +++..|+ |++++.|.+
T Consensus 2051 d~f~kd-~~G~~~i~l~~vv~~~~~~~~~~L~~--------~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2051 NTFGKS-SLGKVTIQIDRVVMEGTYSGEYSLNP--------ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CccCCC-CCceEEEEHHHHhcCceeeeeeecCc--------ccccCCCcceEEEEEEecC
Confidence 988554 89999999999999888889998864 2456777 999999865
|
|
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.7e-14 Score=111.03 Aligned_cols=85 Identities=36% Similarity=0.603 Sum_probs=76.4
Q ss_pred EEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCe
Q 011813 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~ 345 (477)
|+|+|++|+||+..+..+.+||||++.+.+.....++|+++.++.+|.|||+|.|.+.....+.|.|+|||++..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 78999999999998888899999999998754445799999999999999999999877676779999999999988999
Q ss_pred eEEEE
Q 011813 346 LGMQL 350 (477)
Q Consensus 346 lG~~~ 350 (477)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-12 Score=140.80 Aligned_cols=172 Identities=23% Similarity=0.328 Sum_probs=123.5
Q ss_pred ccchhHHHHHHHHHhhhccccCCce-------eee---ecCC----cccccccCCceEEEEEEEEccccccccccCCCCc
Q 011813 222 IPGLYQFIQKCITKYVAGIYIWPQT-------YEI---PILD----ASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDP 287 (477)
Q Consensus 222 iP~l~~~i~~~i~~~i~~~~v~P~~-------~~i---~i~~----~~~~~~~~~~G~L~V~v~~A~~L~~~d~~g~~dp 287 (477)
++....-+.+.|.......++.|.+ ++. |+.- .+......++|.++|.|..|.+|......+++||
T Consensus 655 i~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dP 734 (1227)
T COG5038 655 IATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDP 734 (1227)
T ss_pred eccccccchHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCccccc
Confidence 3444455567777777777777765 222 3332 1222367899999999999999998778899999
Q ss_pred EEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCeeEEEEEECcccCCCC---ceEE
Q 011813 288 YVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE---TKEF 364 (477)
Q Consensus 288 yv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~~---~~~~ 364 (477)
|+++.+.+. .+++|-....+.||.|||..+..+... .+.+.++++|++..+.|..+|++.++..++.... ....
T Consensus 735 ya~v~~n~~--~k~rti~~~~~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~ 811 (1227)
T COG5038 735 YATVLVNNL--VKYRTIYGSSTLNPIWNEILYVPVTSK-NQRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALME 811 (1227)
T ss_pred ceEEEecce--eEEEEecccCccccceeeeEEEEecCC-ccEEeeeeecchhccccceeceeeeeeeeeeecCCCcceEE
Confidence 999999863 346888888999999999999998764 5779999999999999999999999999886521 1122
Q ss_pred EEecccccCCCCCCCCccceEEEEEEEEEecc
Q 011813 365 TLDLLKHTNISDPKDMKQRGKIVVELTYVPFK 396 (477)
Q Consensus 365 ~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~ 396 (477)
+..-......-...+...+|++.+.++|+|..
T Consensus 812 ~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~ 843 (1227)
T COG5038 812 TIDGAEETGKLSLTGKKVKGTITYKCRFYPAV 843 (1227)
T ss_pred eecCcccccccccccCCcceeEEEEEEEEeec
Confidence 22111111110111356789999999999843
|
|
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.3e-15 Score=138.49 Aligned_cols=187 Identities=28% Similarity=0.363 Sum_probs=143.8
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEE--eecC-CCCeEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLV--VKEP-ESQILQLQ 333 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~--v~~~-~~~~L~v~ 333 (477)
.+.....+..++.+|++|++++.++..|||++..+++. +..+.+|++..+++||.|||+-... ..+. ....+++.
T Consensus 88 y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~ 167 (362)
T KOG1013|consen 88 YDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKV 167 (362)
T ss_pred hhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhhee
Confidence 34456778999999999999999999999999999764 3334578888999999999765443 3332 25678899
Q ss_pred EEecCCCCCCCeeEEEEEECcccCCCCceEEEEecccccC--CCCCCCCccceEEEEEEEEEecccCccccccccccccc
Q 011813 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTN--ISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSR 411 (477)
Q Consensus 334 V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~--~~~~~~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~ 411 (477)
|.|.+.+..++++|+..+++..+.+.+.+.+...|.+.+. ..+..+.+.+|++.+++.|-.
T Consensus 168 vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s----------------- 230 (362)
T KOG1013|consen 168 VCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSS----------------- 230 (362)
T ss_pred eccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCc-----------------
Confidence 9999999999999999999999987765443332222222 222223478899999998854
Q ss_pred CCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC-----eEeeeeeeeeccCccceecC
Q 011813 412 KGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-----DKKRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 412 ~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~-----~~~kTkv~~~t~~P~~~~~~ 477 (477)
...-|.|++.+|.+|.. ++.+||||+.++.. .++||++.|+|.+|.|+.++
T Consensus 231 ---------------~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~ 289 (362)
T KOG1013|consen 231 ---------------TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEF 289 (362)
T ss_pred ---------------CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccc
Confidence 45678899999999965 68999999999853 34499999999999999763
|
|
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.2e-12 Score=109.32 Aligned_cols=95 Identities=32% Similarity=0.340 Sum_probs=80.5
Q ss_pred EEEEEEEccccccc--cccC--CCCcEEEEEEcCcccCceeeeeeCCCCC--CeeeeEEEEEeecC--------------
Q 011813 266 LHVKVVRASKLLKK--DFLG--TSDPYVKLSLTGEKLPWKKTTVKKKNLN--PEWNENFKLVVKEP-------------- 325 (477)
Q Consensus 266 L~V~v~~A~~L~~~--d~~g--~~dpyv~v~l~~~~~~~~kT~v~~~t~n--P~WnE~f~f~v~~~-------------- 325 (477)
|+|.|.+|++++.. +..| .+||||+..+.+....+++|.++.+++| |.||+.|.|.+.-+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 79999999996643 3356 4999999999886556689999999999 99999999987641
Q ss_pred ---------CCCeEEEEEEecCCCCCCCeeEEEEEECcccCCCC
Q 011813 326 ---------ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360 (477)
Q Consensus 326 ---------~~~~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~~ 360 (477)
....|.++|||+|.+++|++||++.++|..+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 24689999999999999999999999999887653
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-12 Score=132.93 Aligned_cols=123 Identities=27% Similarity=0.426 Sum_probs=98.8
Q ss_pred cCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCC
Q 011813 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDK 339 (477)
Q Consensus 260 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~ 339 (477)
......++++|++|.+|..+|..|++||||...++..+ ++|+++...+||+|||.|+|..++. +..+.+.|||+|.
T Consensus 291 skwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktk---rrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded~ 366 (1283)
T KOG1011|consen 291 SKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTK---RRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDEDN 366 (1283)
T ss_pred cccceeeEEeeeecccceecccCCCCCCcEEEeecccc---hhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCcc
Confidence 45567899999999999999999999999999998654 4899999999999999999999874 5789999999874
Q ss_pred C-----------CCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 011813 340 V-----------GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (477)
Q Consensus 340 ~-----------~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (477)
. ..|||+|+..+.+..+...-.. |+.|.++.+ +....|-|++.++.-
T Consensus 367 dlksklrqkl~resddflgqtvievrtlsgemdv--wynlekrtd-----ksavsgairlhisve 424 (1283)
T KOG1011|consen 367 DLKSKLRQKLTRESDDFLGQTVIEVRTLSGEMDV--WYNLEKRTD-----KSAVSGAIRLHISVE 424 (1283)
T ss_pred cHHHHHHHHhhhcccccccceeEEEEecccchhh--hcchhhccc-----hhhccceEEEEEEEE
Confidence 3 2589999999999988765444 444444322 356778776666543
|
|
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-12 Score=108.68 Aligned_cols=62 Identities=19% Similarity=0.156 Sum_probs=55.3
Q ss_pred eEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCCCCCCCcEEEEEEcC----eE
Q 011813 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKG----DK 459 (477)
Q Consensus 384 G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~~~~~DPyvkv~l~~----~~ 459 (477)
|+|+++++|.| ..+.|+|+|++|+||+..+.+|||||+++.. ++
T Consensus 1 ~~l~fsL~Y~~--------------------------------~~~~L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k 48 (118)
T cd08677 1 PKLHYSLSYDK--------------------------------QKAELHVNILEAENISVDAGCECYISGCVSVSEGQKE 48 (118)
T ss_pred CeEEEEEEEcC--------------------------------cCCEEEEEEEEecCCCCCCCCCeEEEEEEcCCcCccE
Confidence 67999999998 6899999999999999777899999999964 46
Q ss_pred eeeeeeeeccCccceecC
Q 011813 460 KRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 460 ~kTkv~~~t~~P~~~~~~ 477 (477)
+||+++++|+||.||+.|
T Consensus 49 ~kT~v~rktlnPvfnE~f 66 (118)
T cd08677 49 AQTALKKLALHTQWEEEL 66 (118)
T ss_pred EEcceecCCCCCccccEE
Confidence 699999999999999653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.9e-12 Score=100.86 Aligned_cols=95 Identities=45% Similarity=0.667 Sum_probs=81.7
Q ss_pred EEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCe
Q 011813 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~ 345 (477)
|.|+|++|++|......+..+|||++++.+.....++|+++.++.||.|||+|.|.+.....+.|.++|||.+..+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 68999999999987765688999999998652234689999999999999999999987657899999999998777899
Q ss_pred eEEEEEECcccCCCC
Q 011813 346 LGMQLVPLKLLTPHE 360 (477)
Q Consensus 346 lG~~~v~L~~l~~~~ 360 (477)
+|.+.+++.++..+.
T Consensus 82 ~G~~~~~l~~~~~~~ 96 (101)
T smart00239 82 IGQVTIPLSDLLLGG 96 (101)
T ss_pred eEEEEEEHHHcccCc
Confidence 999999999987654
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.6e-11 Score=97.96 Aligned_cols=100 Identities=44% Similarity=0.637 Sum_probs=83.4
Q ss_pred EEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCe
Q 011813 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~ 345 (477)
|.|+|++|++|......+..+|||.+.+.+. ...+|+++.++.||.|||.|.|.+.......+.++|||.+..+.+++
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~--~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 78 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGK--QKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDF 78 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccC--ceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCce
Confidence 5789999999988666678999999999862 23589999999999999999999976456789999999998877899
Q ss_pred eEEEEEECcccC-CCCceEEEEe
Q 011813 346 LGMQLVPLKLLT-PHETKEFTLD 367 (477)
Q Consensus 346 lG~~~v~L~~l~-~~~~~~~~~~ 367 (477)
+|.+.+++.++. .......|++
T Consensus 79 ig~~~~~l~~l~~~~~~~~~~~~ 101 (102)
T cd00030 79 LGEVEIPLSELLDSGKEGELWLP 101 (102)
T ss_pred eEEEEEeHHHhhhcCCcCcceec
Confidence 999999999988 4444444443
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-11 Score=124.64 Aligned_cols=97 Identities=39% Similarity=0.542 Sum_probs=84.7
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEee--cCCCCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVK--EPESQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V 334 (477)
...+.|.|+|.|++|++|+..+..+.+||||++++... +..+++|.+++++.||+|||+|.|.++ ....-.+.|+|
T Consensus 293 Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V 372 (421)
T KOG1028|consen 293 YLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTV 372 (421)
T ss_pred eecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEE
Confidence 45567999999999999999999999999999998544 355689999999999999999999887 33355799999
Q ss_pred EecCCCCCCCeeEEEEEECcc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKL 355 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~ 355 (477)
||+|.++++++||++.+....
T Consensus 373 ~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 373 WDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred EEcccccccceeeEEEecCCC
Confidence 999999999999999887765
|
|
| >PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1 | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=93.41 Aligned_cols=85 Identities=22% Similarity=0.427 Sum_probs=73.8
Q ss_pred HHHHHHHhh-hHH-HHHHHHHHHHHHHHHhhc-cCCceeeeEEEeEeeCCCCCCeEeeEEEEec-CCCeEEEEeeeeeec
Q 011813 78 NRFLSDMWP-YLD-KAICANVRTTAQPIFDEY-SGKFKIESIEFENLTLGTLPPTIYGIRVYET-NENQLVMEPALRWAG 153 (477)
Q Consensus 78 N~~l~~~Wp-~~~-~~~~~~i~~~~~~~l~~~-~p~~~i~~i~~~~~~lG~~~P~i~~ir~~~~-~~~~~~le~~~~~~~ 153 (477)
|.+++|++- +++ +++.+.+++.++..|++. +|+| +++|++++++||+.+|.|+++|+.+. .++++.+|+++.|.|
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~f-l~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G 79 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSF-LDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSG 79 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCc-cCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcC
Confidence 677888765 333 688999999999999984 6998 99999999999999999999999875 445699999999999
Q ss_pred CCcEEEEEEE
Q 011813 154 NPNIVLVLKL 163 (477)
Q Consensus 154 ~~~i~l~~~~ 163 (477)
+..+++++++
T Consensus 80 ~~~l~l~t~l 89 (91)
T PF10296_consen 80 GFSLTLETKL 89 (91)
T ss_pred CeEEEEEEEE
Confidence 9999998875
|
These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria []. |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.4e-11 Score=104.34 Aligned_cols=63 Identities=21% Similarity=0.305 Sum_probs=54.2
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCCC-----CCCCcEEEEEEcC
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE-----NHNNPYAIILYKG 457 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~~-----~~~DPyvkv~l~~ 457 (477)
.|+|.++|+|.| .++.|.|+|++|+||+.. +.+|||||+++..
T Consensus 1 ~Gel~~sL~Y~~--------------------------------~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~ 48 (138)
T cd08407 1 TGEVLLSISYLP--------------------------------AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKH 48 (138)
T ss_pred CCEEEEEEEEeC--------------------------------CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEc
Confidence 499999999998 678999999999999752 4589999999865
Q ss_pred -----eEeeeeeeeeccCccceecC
Q 011813 458 -----DKKRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 458 -----~~~kTkv~~~t~~P~~~~~~ 477 (477)
+++||+++++|+||.||+.|
T Consensus 49 ~~~k~~kkkT~v~k~t~nPvfNE~f 73 (138)
T cd08407 49 QNAKLKKKQTKRAKHKINPVWNEMI 73 (138)
T ss_pred CCcccceeccceeeCCCCCccccEE
Confidence 24589999999999999643
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-11 Score=105.07 Aligned_cols=61 Identities=25% Similarity=0.367 Sum_probs=53.5
Q ss_pred eEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC---
Q 011813 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG--- 457 (477)
Q Consensus 384 G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~--- 457 (477)
|+|.++|+|.| ..+.|.|+|++|+||+. ++.+||||++++..
T Consensus 2 G~i~~sL~Y~~--------------------------------~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~ 49 (136)
T cd08406 2 GEILLSLSYLP--------------------------------TAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGR 49 (136)
T ss_pred cEEEEEEEEcC--------------------------------CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCc
Confidence 99999999998 56789999999999986 46899999999953
Q ss_pred --eEeeeeeeeeccCccceec
Q 011813 458 --DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 --~~~kTkv~~~t~~P~~~~~ 476 (477)
.++||+++++|+||.||+.
T Consensus 50 ~~~k~kT~v~k~t~nP~~nE~ 70 (136)
T cd08406 50 KISKKKTSVKRDDTNPIFNEA 70 (136)
T ss_pred cccccCCccccCCCCCeecee
Confidence 2558999999999999965
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.3e-11 Score=100.98 Aligned_cols=62 Identities=21% Similarity=0.291 Sum_probs=53.9
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC----CCCCCcEEEEEEcC-
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG----ENHNNPYAIILYKG- 457 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~----~~~~DPyvkv~l~~- 457 (477)
.|+|+++++|.+ ..+.|.|+|++|+||+. .+.+||||++++..
T Consensus 1 ~G~i~~sl~y~~--------------------------------~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~ 48 (125)
T cd04029 1 SGEILFSLSYDY--------------------------------KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPD 48 (125)
T ss_pred CcEEEEEEEEEC--------------------------------CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcC
Confidence 499999999987 67899999999999975 36899999999952
Q ss_pred ----eEeeeeeeeeccCccceec
Q 011813 458 ----DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 ----~~~kTkv~~~t~~P~~~~~ 476 (477)
.++||+++++|+||.||..
T Consensus 49 ~~~~~~~kT~v~~~t~nP~wnE~ 71 (125)
T cd04029 49 KSRQSKRKTSIKRNTTNPVYNET 71 (125)
T ss_pred CccccceEeeeeeCCCCCcccce
Confidence 3569999999999999964
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.4e-10 Score=117.53 Aligned_cols=98 Identities=27% Similarity=0.452 Sum_probs=81.9
Q ss_pred ceEEEEEEEEcccccc-----ccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEE
Q 011813 263 VGILHVKVVRASKLLK-----KDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF 335 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~-----~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~ 335 (477)
...|.|+|+.|++++. .+.....||||+|.+.+- ....++|++..++.||.|||+|.|.+..++-..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 4679999999998751 122356799999999653 223467888889999999999999999887778999999
Q ss_pred ecCCCCCCCeeEEEEEECcccCCCC
Q 011813 336 DWDKVGGHDRLGMQLVPLKLLTPHE 360 (477)
Q Consensus 336 d~d~~~~d~~lG~~~v~L~~l~~~~ 360 (477)
|+|..+.|+++|++.+|+..+..+-
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy 512 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGI 512 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCc
Confidence 9998888999999999999999875
|
|
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.5e-11 Score=100.94 Aligned_cols=62 Identities=23% Similarity=0.335 Sum_probs=53.9
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---C-CCCCcEEEEEEcC-
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---E-NHNNPYAIILYKG- 457 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~-~~~DPyvkv~l~~- 457 (477)
+|+|++++.|.+ ..+.|.|+|++|+||+. . +.+||||++++..
T Consensus 1 ~G~i~~sl~y~~--------------------------------~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~ 48 (125)
T cd08393 1 QGSVQFALDYDP--------------------------------KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPD 48 (125)
T ss_pred CcEEEEEEEEEC--------------------------------CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcC
Confidence 699999999987 56889999999999986 2 6899999999952
Q ss_pred ----eEeeeeeeeeccCccceec
Q 011813 458 ----DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 ----~~~kTkv~~~t~~P~~~~~ 476 (477)
.++||+++++|+||.||..
T Consensus 49 ~~~~~~~kT~v~~~t~nP~~nE~ 71 (125)
T cd08393 49 KSNRGKRKTSVKKKTLNPVFNET 71 (125)
T ss_pred CCccccccCccCcCCCCCccCce
Confidence 3469999999999999953
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-10 Score=101.09 Aligned_cols=64 Identities=28% Similarity=0.259 Sum_probs=54.2
Q ss_pred CccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC----CCCCCcEEEEEE
Q 011813 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG----ENHNNPYAIILY 455 (477)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~----~~~~DPyvkv~l 455 (477)
....|+|++++.|. .+.|.|+|++|+||+. ++.+|||||+++
T Consensus 14 ~~~~G~l~lsl~y~----------------------------------~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~L 59 (146)
T cd04028 14 SPSMGDIQLGLYDK----------------------------------KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYL 59 (146)
T ss_pred CCCcceEEEEEEeC----------------------------------CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEE
Confidence 55789999999983 4689999999999975 357999999999
Q ss_pred cC-----eEeeeeeeeeccCccceecC
Q 011813 456 KG-----DKKRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 456 ~~-----~~~kTkv~~~t~~P~~~~~~ 477 (477)
.. .++||+++++|+||.||+.|
T Consensus 60 lp~~~~~~k~KT~v~kktlnPvfNE~F 86 (146)
T cd04028 60 LEGKKCIAKKKTKIARKTLDPLYQQQL 86 (146)
T ss_pred ECCCccccceeceecCCCCCCccCCeE
Confidence 54 25699999999999999754
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-10 Score=99.31 Aligned_cols=62 Identities=16% Similarity=0.252 Sum_probs=54.2
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---C-CCCCcEEEEEEcC-
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---E-NHNNPYAIILYKG- 457 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~-~~~DPyvkv~l~~- 457 (477)
.|+|++++.|.+ ..+.|.|.|++|+||+. . +.+||||++++..
T Consensus 1 ~G~i~~sl~Y~~--------------------------------~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~ 48 (128)
T cd08392 1 TGEIEFALHYNF--------------------------------RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPD 48 (128)
T ss_pred CcEEEEEEEEeC--------------------------------CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeC
Confidence 499999999997 57899999999999975 2 7899999999963
Q ss_pred ----eEeeeeeeeeccCccceec
Q 011813 458 ----DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 ----~~~kTkv~~~t~~P~~~~~ 476 (477)
.++||+++++|+||.||+.
T Consensus 49 ~~~~~k~kT~v~~~t~nPvfNE~ 71 (128)
T cd08392 49 KSHNSKRKTAVKKGTVNPVFNET 71 (128)
T ss_pred CcccceeecccccCCCCCccceE
Confidence 3669999999999999965
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.9e-10 Score=117.87 Aligned_cols=130 Identities=22% Similarity=0.363 Sum_probs=104.1
Q ss_pred CceEEEEEEEEcccccccc------------------ccCCCCcEEEEEEcCcccCceeeeeeCCC-CCCeeeeEEEEEe
Q 011813 262 PVGILHVKVVRASKLLKKD------------------FLGTSDPYVKLSLTGEKLPWKKTTVKKKN-LNPEWNENFKLVV 322 (477)
Q Consensus 262 ~~G~L~V~v~~A~~L~~~d------------------~~g~~dpyv~v~l~~~~~~~~kT~v~~~t-~nP~WnE~f~f~v 322 (477)
-.|.|.|+|.+|++|+..+ ..+.+||||.+.+++.+. .||+++.+. .||.|||+|.+.+
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v--~rtr~~~~~~~~p~w~e~f~i~~ 83 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARV--GRTRKIENEPKNPRWYESFHIYC 83 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEE--EEEeecCCCCCCCccccceEEee
Confidence 3599999999999998531 125789999999997654 699999875 6999999999998
Q ss_pred ecCCCCeEEEEEEecCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEecccCc
Q 011813 323 KEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDS 399 (477)
Q Consensus 323 ~~~~~~~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~~~ 399 (477)
.... ..+.|.|.|.|.++. .+||.+.+|..++..++..+.|+++...- .+..+..-.|++++.|+|...+.
T Consensus 84 ah~~-~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~----~~p~~~~~~~~~~~~f~~~~~~~ 154 (808)
T PLN02270 84 AHMA-SNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDND----KNPIHGGSKIHVKLQYFEVTKDR 154 (808)
T ss_pred ccCc-ceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCC----CCcCCCCCEEEEEEEEEEcccCc
Confidence 7654 689999999998765 59999999999999998888999886531 11122334899999999977764
|
|
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.4e-10 Score=98.24 Aligned_cols=63 Identities=19% Similarity=0.251 Sum_probs=54.6
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---C-CCCCcEEEEEEc--
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---E-NHNNPYAIILYK-- 456 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~-~~~DPyvkv~l~-- 456 (477)
+|+|.+++.|.+ ..+.|+|+|++|+||+. . +.+||||++++.
T Consensus 2 ~G~l~~~l~y~~--------------------------------~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~ 49 (128)
T cd08388 2 LGTLFFSLRYNS--------------------------------EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPE 49 (128)
T ss_pred CeEEEEEEEEEC--------------------------------CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCC
Confidence 699999999987 57899999999999986 2 679999999985
Q ss_pred -CeEeeeeeeeeccCccceecC
Q 011813 457 -GDKKRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 457 -~~~~kTkv~~~t~~P~~~~~~ 477 (477)
.+++||+++++|+||.||+.+
T Consensus 50 ~~~~~kT~v~~~t~nP~wnE~F 71 (128)
T cd08388 50 KEHKVKTRVLRKTRNPVYDETF 71 (128)
T ss_pred cCceeeccEEcCCCCCceeeEE
Confidence 345599999999999999653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-09 Score=114.25 Aligned_cols=104 Identities=28% Similarity=0.394 Sum_probs=84.0
Q ss_pred ceEEEEEEEEccccccc------cccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEE
Q 011813 263 VGILHVKVVRASKLLKK------DFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQV 334 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~------d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V 334 (477)
...|.|+|+.|.+++.. +.....||||++.+-+- ...+++|+++.++.||.|||+|.|.+..++-..++|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46899999999987531 11234599999998642 22356899999999999999999999877767899999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~ 369 (477)
||+|..+.|+++|++.+|+..+..+.. +++|.
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~GyR---~VpL~ 580 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGIR---SVPLH 580 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCce---eEeCc
Confidence 999988899999999999999998863 55554
|
|
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.1e-10 Score=102.63 Aligned_cols=74 Identities=22% Similarity=0.314 Sum_probs=58.3
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc---
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK--- 456 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~--- 456 (477)
+|+|.++++|.|...+... .......|.|+|+|++|+||+. .+.+||||++++.
T Consensus 1 ~G~l~~~l~y~~~~~~~~~--------------------~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~ 60 (162)
T cd04020 1 RGELKVALKYVPPESEGAL--------------------KSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDK 60 (162)
T ss_pred CceEEEEEEecCccccccc--------------------cccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCC
Confidence 5999999999995433111 1122378999999999999986 4689999999983
Q ss_pred --CeEeeeeeeeeccCccceec
Q 011813 457 --GDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 457 --~~~~kTkv~~~t~~P~~~~~ 476 (477)
..++||+++++|+||.||..
T Consensus 61 ~~~~~~kT~vi~~t~nP~WnE~ 82 (162)
T cd04020 61 SKKSKQKTPVVKKSVNPVWNHT 82 (162)
T ss_pred CCCcceeCCccCCCCCCCCCCE
Confidence 35669999999999999954
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.2e-10 Score=97.60 Aligned_cols=50 Identities=26% Similarity=0.270 Sum_probs=43.0
Q ss_pred ceEEEEEEeeeecCCC--CCCCCcEEEEEEcC-----eEeeeeeeeeccCccceecC
Q 011813 428 AGLLSVLVQGAEDVEG--ENHNNPYAIILYKG-----DKKRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 428 ~g~L~V~V~~A~~L~~--~~~~DPyvkv~l~~-----~~~kTkv~~~t~~P~~~~~~ 477 (477)
.+.|+|.|++|+||+. ++.+||||++++.+ .++||+++++|+||.||..|
T Consensus 12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F 68 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEML 68 (122)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEE
Confidence 3679999999999986 56899999999973 46699999999999999653
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-10 Score=96.82 Aligned_cols=63 Identities=17% Similarity=0.271 Sum_probs=55.3
Q ss_pred cceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc--
Q 011813 382 QRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK-- 456 (477)
Q Consensus 382 ~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~-- 456 (477)
+.|+|.+++.|.+ ..+.|+|+|++|+||+. .+.+||||++++.
T Consensus 1 ~~G~l~~~l~y~~--------------------------------~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~ 48 (127)
T cd04030 1 PLGRIQLTIRYSS--------------------------------QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPD 48 (127)
T ss_pred CCeEEEEEEEEeC--------------------------------CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcC
Confidence 4799999999987 57899999999999986 4689999999996
Q ss_pred ---CeEeeeeeeeeccCccceec
Q 011813 457 ---GDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 457 ---~~~~kTkv~~~t~~P~~~~~ 476 (477)
..++||+++++|.||.||..
T Consensus 49 ~~~~~~~kT~v~~~~~nP~wne~ 71 (127)
T cd04030 49 KSKSTRRKTSVKKDNLNPVFDET 71 (127)
T ss_pred CCCCceEecccccCCCCCEECeE
Confidence 35669999999999999953
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.1e-10 Score=97.92 Aligned_cols=62 Identities=24% Similarity=0.280 Sum_probs=53.9
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC--CCCCCcEEEEEEcC---
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG--ENHNNPYAIILYKG--- 457 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~--~~~~DPyvkv~l~~--- 457 (477)
.|+|+++++|.| ..+.|.|+|++|+||+. .+.+||||++++..
T Consensus 1 ~G~i~~sl~y~~--------------------------------~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~ 48 (137)
T cd08409 1 LGDIQISLTYNP--------------------------------TLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNK 48 (137)
T ss_pred CcEEEEEEEECC--------------------------------CCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCE
Confidence 499999999997 57889999999999975 46799999999864
Q ss_pred --eEeeeeeeeeccCccceec
Q 011813 458 --DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 --~~~kTkv~~~t~~P~~~~~ 476 (477)
+++||+++++|+||.||+.
T Consensus 49 ~~~~~kT~v~~~~~nP~fnE~ 69 (137)
T cd08409 49 VVKTKKTEVVDGAASPSFNES 69 (137)
T ss_pred EeeeeecccEeCCCCCcccce
Confidence 3569999999999999964
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.4e-10 Score=96.23 Aligned_cols=59 Identities=8% Similarity=0.042 Sum_probs=50.1
Q ss_pred EEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCCC---CCCCcEEEEEEcC----
Q 011813 385 KIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG---- 457 (477)
Q Consensus 385 ~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~~---~~~DPyvkv~l~~---- 457 (477)
+|+++|+|.| .+|+|+|+|.+|+||+.. +.+||||||++-+
T Consensus 2 el~~sL~Y~p--------------------------------~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~ 49 (135)
T cd08692 2 ELQLGTCFQA--------------------------------VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGL 49 (135)
T ss_pred eEEEEeeecC--------------------------------cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCc
Confidence 7999999998 789999999999999873 5679999998742
Q ss_pred -eEeeeeeeeecc-Ccccee
Q 011813 458 -DKKRTKVSFLSL-LYTYSL 475 (477)
Q Consensus 458 -~~~kTkv~~~t~-~P~~~~ 475 (477)
+|+||+++++|+ +|.||+
T Consensus 50 ~~KkKT~v~k~t~~~P~fNE 69 (135)
T cd08692 50 LYKKKTRLVKSSNGQVKWGE 69 (135)
T ss_pred ceeecCccEECCCCCceecc
Confidence 566999999995 588884
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.3e-10 Score=95.54 Aligned_cols=62 Identities=27% Similarity=0.312 Sum_probs=54.7
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~-- 457 (477)
.|+|++++.|.+ ..+.|.|+|++|+||+. .+.+||||++++.+
T Consensus 2 ~G~l~~~l~~~~--------------------------------~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~ 49 (125)
T cd04031 2 TGRIQIQLWYDK--------------------------------VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDR 49 (125)
T ss_pred cEEEEEEEEEeC--------------------------------CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCC
Confidence 699999999987 67899999999999976 46799999999975
Q ss_pred ---eEeeeeeeeeccCccceec
Q 011813 458 ---DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 ---~~~kTkv~~~t~~P~~~~~ 476 (477)
.++||+++++|++|.||..
T Consensus 50 ~~~~~~kT~v~~~t~nP~wne~ 71 (125)
T cd04031 50 SEKSKRRTKTVKKTLNPEWNQT 71 (125)
T ss_pred CccccccccccCCCCCCccccE
Confidence 4569999999999999954
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.6e-11 Score=120.96 Aligned_cols=133 Identities=28% Similarity=0.498 Sum_probs=105.1
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcc-------------------------c---CceeeeeeCCCC
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK-------------------------L---PWKKTTVKKKNL 310 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~-------------------------~---~~~kT~v~~~t~ 310 (477)
.+.|.-.|.|.+.+|+||..+|.+|.||||+.+.+.+.. . -.+-|+++++|+
T Consensus 109 ~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TL 188 (1103)
T KOG1328|consen 109 NKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTL 188 (1103)
T ss_pred CCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccC
Confidence 455666678889999999999999999999998873210 0 124688999999
Q ss_pred CCeeeeEEEEEeecCCCCeEEEEEEecCCC---------------------------------C---CCCeeEEEEEECc
Q 011813 311 NPEWNENFKLVVKEPESQILQLQVFDWDKV---------------------------------G---GHDRLGMQLVPLK 354 (477)
Q Consensus 311 nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~---------------------------------~---~d~~lG~~~v~L~ 354 (477)
||+|+|.|.|.+.+..+..+++.+||+|+- + .|||+|.+.+||.
T Consensus 189 nPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~ 268 (1103)
T KOG1328|consen 189 NPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLA 268 (1103)
T ss_pred CcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchh
Confidence 999999999999998899999999998743 1 3899999999999
Q ss_pred ccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEeccc
Q 011813 355 LLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKE 397 (477)
Q Consensus 355 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~ 397 (477)
++... +.+.|+.|.++.+ .++.+|++++.+...-..+
T Consensus 269 EiP~~-Gld~WFkLepRS~-----~S~VqG~~~LklwLsT~e~ 305 (1103)
T KOG1328|consen 269 EIPPD-GLDQWFKLEPRSD-----KSKVQGQVKLKLWLSTKEE 305 (1103)
T ss_pred cCCcc-hHHHHhccCcccc-----cccccceEEEEEEEeeecc
Confidence 99865 3456666655432 4678999999997765433
|
|
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.6e-10 Score=97.40 Aligned_cols=61 Identities=23% Similarity=0.352 Sum_probs=53.1
Q ss_pred eEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC---
Q 011813 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG--- 457 (477)
Q Consensus 384 G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~--- 457 (477)
|+|.+++.|.| ..|.|.|.|++|+||+. .+.+||||++++.+
T Consensus 1 G~i~~~l~y~~--------------------------------~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~ 48 (135)
T cd08410 1 GELLLSLNYLP--------------------------------SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLK 48 (135)
T ss_pred CcEEEEEEECC--------------------------------CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCc
Confidence 89999999998 56899999999999986 46899999999832
Q ss_pred --eEeeeeeeeeccCccceec
Q 011813 458 --DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 --~~~kTkv~~~t~~P~~~~~ 476 (477)
+++||+++++|+||.||..
T Consensus 49 ~~~~~kT~v~~~t~nP~wnE~ 69 (135)
T cd08410 49 LIKTKKTSCMRGTIDPFYNES 69 (135)
T ss_pred ccceEcCccccCCCCCcccee
Confidence 3469999999999999964
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.9e-10 Score=94.42 Aligned_cols=62 Identities=21% Similarity=0.374 Sum_probs=54.2
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc---
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK--- 456 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~--- 456 (477)
+|+|++++.|.| ..+.|.|+|++|+||+. .+.+||||++++.
T Consensus 2 ~G~l~~sl~y~~--------------------------------~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~ 49 (124)
T cd08387 2 RGELHFSLEYDK--------------------------------DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDR 49 (124)
T ss_pred CCEEEEEEEECC--------------------------------CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCC
Confidence 699999999987 56899999999999986 4689999999994
Q ss_pred CeEeeeeeeeeccCccceec
Q 011813 457 GDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 457 ~~~~kTkv~~~t~~P~~~~~ 476 (477)
++++||+++++|++|.||..
T Consensus 50 ~~~~kT~v~~~t~~P~wne~ 69 (124)
T cd08387 50 SNTKQSKIHKKTLNPEFDES 69 (124)
T ss_pred CCcEeCceEcCCCCCCcccE
Confidence 34569999999999999953
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-09 Score=93.68 Aligned_cols=62 Identities=19% Similarity=0.240 Sum_probs=54.2
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc---
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK--- 456 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~--- 456 (477)
.|+|++++.|.+ ..+.|.|.|++|+||+. .+.+||||++++.
T Consensus 2 ~G~l~~~l~y~~--------------------------------~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~ 49 (125)
T cd08386 2 LGRIQFSVSYDF--------------------------------QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDK 49 (125)
T ss_pred ccEEEEEEEECC--------------------------------CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCC
Confidence 699999999987 56789999999999976 4689999999993
Q ss_pred CeEeeeeeeeeccCccceec
Q 011813 457 GDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 457 ~~~~kTkv~~~t~~P~~~~~ 476 (477)
+++.||+++++|.+|.||..
T Consensus 50 ~~~~kT~v~~~t~~P~Wne~ 69 (125)
T cd08386 50 KHKLETKVKRKNLNPHWNET 69 (125)
T ss_pred CcceeeeeecCCCCCcccee
Confidence 45669999999999999964
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-09 Score=92.81 Aligned_cols=49 Identities=16% Similarity=0.071 Sum_probs=42.3
Q ss_pred ceEEEEEEeeeecCCC--CCCCCcEEEEEEcC-----eEeeeeeeeeccCccceec
Q 011813 428 AGLLSVLVQGAEDVEG--ENHNNPYAIILYKG-----DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 428 ~g~L~V~V~~A~~L~~--~~~~DPyvkv~l~~-----~~~kTkv~~~t~~P~~~~~ 476 (477)
.+.|.|+|++|+||+. .+.+||||++++.. .++||+++++|+||.||+.
T Consensus 11 ~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~ 66 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHET 66 (119)
T ss_pred CCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccE
Confidence 5689999999999976 46899999999964 3559999999999999964
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.8e-09 Score=111.86 Aligned_cols=99 Identities=23% Similarity=0.356 Sum_probs=81.5
Q ss_pred ceEEEEEEEEccccccc------cccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEE
Q 011813 263 VGILHVKVVRASKLLKK------DFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQV 334 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~------d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V 334 (477)
...|.|+|+.+.+++.. +.....||||++.+-+- ...+++|++..++.||.|||+|.|.+..++-..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 46899999999987421 22245799999998542 22346889989999999999999999887777899999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHET 361 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~ 361 (477)
+|+|...+|+++|+..+|+..|..+-.
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR 574 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGIH 574 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCccc
Confidence 999988899999999999999998753
|
|
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-09 Score=93.09 Aligned_cols=50 Identities=14% Similarity=0.045 Sum_probs=43.1
Q ss_pred cceEEEEEEeeeecCCC---CCCCCcEEEEEEcC------eEeeeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG------DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~------~~~kTkv~~~t~~P~~~~~ 476 (477)
..+.|.|+|++|+||+. ++.+|||||+++.. .++||+++++|+||.||+.
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~ 70 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEV 70 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccE
Confidence 67899999999999976 56899999999842 3569999999999999954
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-09 Score=95.10 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=53.2
Q ss_pred eEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC---
Q 011813 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG--- 457 (477)
Q Consensus 384 G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~--- 457 (477)
|+|.++++|.+ ..+.|.|+|.+|+||+. .+.+|||||+++..
T Consensus 2 ~ei~~sL~Y~~--------------------------------~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~ 49 (138)
T cd08408 2 PELLLGLEYNA--------------------------------LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDG 49 (138)
T ss_pred CeEEEEeEEcC--------------------------------CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCC
Confidence 78999999987 67899999999999986 46899999999953
Q ss_pred ---eEeeeeeeeeccCccceec
Q 011813 458 ---DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 ---~~~kTkv~~~t~~P~~~~~ 476 (477)
.++||+++++|+||.||+.
T Consensus 50 ~~~~~~kT~v~~~t~nPvfnEt 71 (138)
T cd08408 50 QEISKSKTSIRRGQPDPEFKET 71 (138)
T ss_pred cceeeccceeecCCCCCcEeee
Confidence 2459999999999999964
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.7e-09 Score=92.35 Aligned_cols=62 Identities=24% Similarity=0.265 Sum_probs=53.9
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~-- 457 (477)
.|+|.+++.|.+ ..+.|.|+|++|+||+. .+.+||||++++.+
T Consensus 2 ~G~l~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~ 49 (124)
T cd08385 2 LGKLQFSLDYDF--------------------------------QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDK 49 (124)
T ss_pred ccEEEEEEEEeC--------------------------------CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCC
Confidence 699999999987 57899999999999986 46899999999854
Q ss_pred -eEeeeeeeeeccCccceec
Q 011813 458 -DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 -~~~kTkv~~~t~~P~~~~~ 476 (477)
+++||+++++|+||.||..
T Consensus 50 ~~~~kT~v~~~t~nP~wne~ 69 (124)
T cd08385 50 KKKFETKVHRKTLNPVFNET 69 (124)
T ss_pred CCceecccCcCCCCCceeee
Confidence 3459999999999999953
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.6e-09 Score=94.12 Aligned_cols=62 Identities=26% Similarity=0.384 Sum_probs=53.1
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~-- 457 (477)
+|+|.++++|.+ ..+.|.|.|++|+||+. .+.+||||++++.+
T Consensus 1 ~G~l~~~l~y~~--------------------------------~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~ 48 (136)
T cd08404 1 RGELLLSLCYQP--------------------------------TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGK 48 (136)
T ss_pred CCeEEEEEEEeC--------------------------------CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCC
Confidence 599999999986 56789999999999986 46899999999853
Q ss_pred ---eEeeeeeeeeccCccceec
Q 011813 458 ---DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 ---~~~kTkv~~~t~~P~~~~~ 476 (477)
.++||+++++|+||.||..
T Consensus 49 ~~~~~~kT~v~k~t~nP~w~e~ 70 (136)
T cd08404 49 KRISKKKTHVKKCTLNPVFNES 70 (136)
T ss_pred ceeeeEcCccccCCCCCccCce
Confidence 2458999999999999853
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.6e-09 Score=94.17 Aligned_cols=62 Identities=31% Similarity=0.453 Sum_probs=53.8
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~-- 457 (477)
.|+|+++++|.| ..|.|.|.|.+|+||+. .+.+||||++++++
T Consensus 1 ~G~l~~~l~y~~--------------------------------~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~ 48 (136)
T cd08402 1 LGDICFSLRYVP--------------------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNG 48 (136)
T ss_pred CcEEEEEeEEcC--------------------------------CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECC
Confidence 499999999998 67899999999999986 46899999999952
Q ss_pred ---eEeeeeeeeeccCccceec
Q 011813 458 ---DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 ---~~~kTkv~~~t~~P~~~~~ 476 (477)
+++||+++++|+||.||..
T Consensus 49 ~~~~~~kT~v~~~t~nP~wne~ 70 (136)
T cd08402 49 KRLKKKKTTIKKRTLNPYYNES 70 (136)
T ss_pred cccceeeccceeCCCCCcccce
Confidence 3458999999999999954
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.1e-09 Score=93.34 Aligned_cols=62 Identities=23% Similarity=0.433 Sum_probs=53.5
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc--C
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK--G 457 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~--~ 457 (477)
+|+|.++++|.+ ..+.|.|+|++|+||+. .+.+||||++++. +
T Consensus 1 ~G~l~~sl~y~~--------------------------------~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~ 48 (136)
T cd08405 1 RGELLLSLCYNP--------------------------------TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKD 48 (136)
T ss_pred CcEEEEEEEEcC--------------------------------CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCC
Confidence 599999999987 57899999999999985 4689999999983 2
Q ss_pred ---eEeeeeeeeeccCccceec
Q 011813 458 ---DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 ---~~~kTkv~~~t~~P~~~~~ 476 (477)
.+.||+++++|+||.||..
T Consensus 49 ~~~~~~kT~v~~~t~~P~wne~ 70 (136)
T cd08405 49 KRVEKKKTVIKKRTLNPVFNES 70 (136)
T ss_pred CccccccCcceeCCCCCcccce
Confidence 2458999999999999954
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.2e-09 Score=108.43 Aligned_cols=98 Identities=29% Similarity=0.513 Sum_probs=81.5
Q ss_pred EEEEEEEEcccccccc----ccCCCCcEEEEEEcCc--ccCceeee-eeCCCCCCeeeeEEEEEeecCCCCeEEEEEEec
Q 011813 265 ILHVKVVRASKLLKKD----FLGTSDPYVKLSLTGE--KLPWKKTT-VKKKNLNPEWNENFKLVVKEPESQILQLQVFDW 337 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d----~~g~~dpyv~v~l~~~--~~~~~kT~-v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~ 337 (477)
.|.|+|+.+.++.... ....+||||.+.+-+- ....++|+ +..++.||.|+|+|+|.+..++-.-|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 6999999999776532 2246899999998542 22346888 667899999999999999988878899999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCce
Q 011813 338 DKVGGHDRLGMQLVPLKLLTPHETK 362 (477)
Q Consensus 338 d~~~~d~~lG~~~v~L~~l~~~~~~ 362 (477)
|..++|||+|+..+|+..|..+-.+
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRh 721 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRH 721 (746)
T ss_pred CCCCcccccceeeccHHHhhCceee
Confidence 9999999999999999999987543
|
|
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=98.90 E-value=3e-09 Score=90.62 Aligned_cols=61 Identities=21% Similarity=0.323 Sum_probs=52.7
Q ss_pred eEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC----CCCCCcEEEEEEcC--
Q 011813 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG----ENHNNPYAIILYKG-- 457 (477)
Q Consensus 384 G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~----~~~~DPyvkv~l~~-- 457 (477)
|+|++++.|.+ ..+.|.|+|.+|+||+. .+.+||||++++.+
T Consensus 1 G~i~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~ 48 (123)
T cd08521 1 GEIEFSLSYNY--------------------------------KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDK 48 (123)
T ss_pred CeEEEEEEEeC--------------------------------CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCC
Confidence 89999999986 57899999999999975 35899999999842
Q ss_pred ---eEeeeeeeeeccCccceec
Q 011813 458 ---DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 ---~~~kTkv~~~t~~P~~~~~ 476 (477)
.++||+++++|.+|.||..
T Consensus 49 ~~~~~~kT~v~~~t~~P~wne~ 70 (123)
T cd08521 49 SKQSKRKTSVKKNTTNPVFNET 70 (123)
T ss_pred CcCceeeccccCCCCCCcccce
Confidence 4569999999999999964
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.9e-08 Score=105.54 Aligned_cols=99 Identities=24% Similarity=0.369 Sum_probs=80.8
Q ss_pred ceEEEEEEEEccccc----cc--cccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEE
Q 011813 263 VGILHVKVVRASKLL----KK--DFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQV 334 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~----~~--d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V 334 (477)
...|.|+|+.+.+++ .. +.....||||++.+.+- ...+++|+++.++.||.|||+|.|.+..++-..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 457999999998753 11 12245799999999642 23356899999999999999999998877777899999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHET 361 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~ 361 (477)
+|+|..+.|+++|++.+|+..|..+-.
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR 557 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGIR 557 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCccc
Confidence 999988889999999999999998753
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.89 E-value=2e-08 Score=105.00 Aligned_cols=123 Identities=22% Similarity=0.324 Sum_probs=92.3
Q ss_pred eEEEEEEEEcccccc---c---cccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCee-eeEEEEEeecCCCCeEEEEE
Q 011813 264 GILHVKVVRASKLLK---K---DFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEW-NENFKLVVKEPESQILQLQV 334 (477)
Q Consensus 264 G~L~V~v~~A~~L~~---~---d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~W-nE~f~f~v~~~~~~~L~v~V 334 (477)
..|+|+|++|++|+. . +.....||||++.+.+- ...+++|++++++.||.| ||+|.|.+..++-.-|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 479999999998731 1 12234799999998643 223468999988899999 99999999877767899999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
+|+|..+.|+++|++.+|+..|..+-.. .+|... ..+.-....|.+.+.+.+
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~GYR~---VpL~~~-----~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSGVRA---VRLHDR-----AGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCCeeE---EEccCC-----CCCCCCCeEEEEEEEEcC
Confidence 9999888999999999999999877432 233221 011223457888888776
|
|
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.8e-09 Score=92.27 Aligned_cols=62 Identities=16% Similarity=0.221 Sum_probs=53.9
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~-- 457 (477)
.|+|.++++|.+ ..+.|+|.|.+|+||+. .+.+||||++++.+
T Consensus 2 ~G~l~~~l~y~~--------------------------------~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~ 49 (133)
T cd04009 2 YGVLTVKAYYRA--------------------------------SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRH 49 (133)
T ss_pred ceEEEEEEEEcC--------------------------------CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCC
Confidence 699999999986 56789999999999986 46899999999963
Q ss_pred -----eEeeeeeeeeccCccceec
Q 011813 458 -----DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 -----~~~kTkv~~~t~~P~~~~~ 476 (477)
.++||+++++|+||.||..
T Consensus 50 ~~~~~~~~kT~v~~~t~nP~wnE~ 73 (133)
T cd04009 50 LFPDVPTPKTQVKKKTLFPLFDES 73 (133)
T ss_pred cCccccccccccCcCCCCCccCCE
Confidence 4569999999999999953
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.8e-09 Score=84.48 Aligned_cols=86 Identities=19% Similarity=0.338 Sum_probs=70.6
Q ss_pred EEEEEEEcccccccc---ccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCC
Q 011813 266 LHVKVVRASKLLKKD---FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (477)
Q Consensus 266 L~V~v~~A~~L~~~d---~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~ 342 (477)
|.|+|.+|+|+...+ ..+.+||||.+++++.. +.||+. +.||.|||+|.|.+. ....+.+.|||... ..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~--kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~-~~ 72 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVE--RARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGG-DQ 72 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEE--EEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCC-Ce
Confidence 679999999998877 56889999999999764 346665 589999999999995 46789999999853 45
Q ss_pred CCeeEEEEEECcccCCC
Q 011813 343 HDRLGMQLVPLKLLTPH 359 (477)
Q Consensus 343 d~~lG~~~v~L~~l~~~ 359 (477)
.-.+|..-+.++++...
T Consensus 73 ~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 73 PVPVGLLWLRLSDIAEE 89 (109)
T ss_pred ecceeeehhhHHHHHHH
Confidence 56799999999888643
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.1e-09 Score=92.12 Aligned_cols=61 Identities=28% Similarity=0.464 Sum_probs=52.9
Q ss_pred eEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC---
Q 011813 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG--- 457 (477)
Q Consensus 384 G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~--- 457 (477)
|+|.+++.|.| ..+.|+|+|++|++|+. .+.+||||++++.+
T Consensus 1 g~l~~~~~y~~--------------------------------~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~ 48 (134)
T cd08403 1 GELMFSLCYLP--------------------------------TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGR 48 (134)
T ss_pred CeEEEEEEEcC--------------------------------CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCc
Confidence 89999999997 67899999999999986 46899999999842
Q ss_pred --eEeeeeeeeeccCccceec
Q 011813 458 --DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 --~~~kTkv~~~t~~P~~~~~ 476 (477)
.++||+++++|++|.||..
T Consensus 49 ~~~~~kT~v~~~t~nP~wne~ 69 (134)
T cd08403 49 RLKKKKTSVKKNTLNPTYNEA 69 (134)
T ss_pred ccceecCCcccCCCCCcccce
Confidence 2458999999999999864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.7e-10 Score=114.54 Aligned_cols=99 Identities=29% Similarity=0.452 Sum_probs=85.8
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcc----cCceeeeeeCCCCCCeeeeEEEEEeecC----CCCeE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKKKNLNPEWNENFKLVVKEP----ESQIL 330 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~----~~~~kT~v~~~t~nP~WnE~f~f~v~~~----~~~~L 330 (477)
.......|.|.|+.|+++.+-|.+|.|||||.+.+++.. ...++|+|+.+|+||+|+|+|+|.|+.. +...+
T Consensus 942 y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~ 1021 (1103)
T KOG1328|consen 942 YNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAML 1021 (1103)
T ss_pred eeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceE
Confidence 344556778888999999999999999999999998753 2467999999999999999999999732 25679
Q ss_pred EEEEEecCCCCCCCeeEEEEEECcccC
Q 011813 331 QLQVFDWDKVGGHDRLGMQLVPLKLLT 357 (477)
Q Consensus 331 ~v~V~d~d~~~~d~~lG~~~v~L~~l~ 357 (477)
.++|+|+|-.+.+||-|++.+.|+++.
T Consensus 1022 ~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1022 HFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred EEEeeccceecccccchHHHHhhCCCC
Confidence 999999999999999999999998876
|
|
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.7e-09 Score=91.01 Aligned_cols=48 Identities=21% Similarity=0.232 Sum_probs=43.2
Q ss_pred EEEEEEeeeec---CCC---CCCCCcEEEEEEcCeEeeeeeeeeccCccceecC
Q 011813 430 LLSVLVQGAED---VEG---ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 430 ~L~V~V~~A~~---L~~---~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~~ 477 (477)
+|.|+|++|+| |+. .|++||||++.+++++.||+++++++||.||+++
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f 54 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQY 54 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEE
Confidence 48999999999 654 5789999999999999999999999999999764
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.2e-09 Score=88.25 Aligned_cols=61 Identities=15% Similarity=0.187 Sum_probs=52.6
Q ss_pred eEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC----CCCCCcEEEEEEc---
Q 011813 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG----ENHNNPYAIILYK--- 456 (477)
Q Consensus 384 G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~----~~~~DPyvkv~l~--- 456 (477)
|+|++++.|.+ ..+.|.|.|.+|+||+. .+.+||||++++.
T Consensus 1 G~l~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~ 48 (123)
T cd08390 1 GRLWFSVQYDL--------------------------------EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDE 48 (123)
T ss_pred CEEEEEEEECC--------------------------------CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCC
Confidence 89999999987 57899999999999985 3579999999984
Q ss_pred CeEeeeeeeeeccCccceec
Q 011813 457 GDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 457 ~~~~kTkv~~~t~~P~~~~~ 476 (477)
.+.+||++++++++|.||..
T Consensus 49 ~~~~~T~v~~~~~~P~wne~ 68 (123)
T cd08390 49 RRSLQSKVKRKTQNPNFDET 68 (123)
T ss_pred CCceEeeeEcCCCCCccceE
Confidence 34559999999999999964
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.9e-09 Score=90.18 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=43.3
Q ss_pred cceEEEEEEeeeecCCC---CCCCCcEEEEEEcC-----eEeeeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-----DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~-----~~~kTkv~~~t~~P~~~~~ 476 (477)
..+.|.|+|++|+||+. .+.+||||++++.+ .+.||+++++|++|.||..
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~ 68 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEE 68 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccE
Confidence 67899999999999986 46899999999963 3459999999999999954
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.9e-09 Score=87.49 Aligned_cols=62 Identities=19% Similarity=0.252 Sum_probs=53.4
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~-- 457 (477)
.|+|++++.|.+ ..+.|+|.|.+|+||+. .+.+||||++++.+
T Consensus 1 ~G~~~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~ 48 (123)
T cd04035 1 LGTLEFTLLYDP--------------------------------ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGA 48 (123)
T ss_pred CcEEEEEEEEeC--------------------------------CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCC
Confidence 489999999987 56889999999999986 36899999999842
Q ss_pred ---eEeeeeeeeeccCccceec
Q 011813 458 ---DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 ---~~~kTkv~~~t~~P~~~~~ 476 (477)
.+.||+++++|++|.||..
T Consensus 49 ~~~~~~rT~v~~~~~~P~Wne~ 70 (123)
T cd04035 49 SKATKLRTKTVHKTRNPEFNET 70 (123)
T ss_pred CCCCceeeeeecCCCCCCccce
Confidence 3569999999999999964
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.6e-09 Score=88.45 Aligned_cols=49 Identities=20% Similarity=0.190 Sum_probs=43.6
Q ss_pred eEEEEEEeeeecCCC--CCCCCcEEEEEEcCeEeeeeeeee-ccCccceecC
Q 011813 429 GLLSVLVQGAEDVEG--ENHNNPYAIILYKGDKKRTKVSFL-SLLYTYSLQL 477 (477)
Q Consensus 429 g~L~V~V~~A~~L~~--~~~~DPyvkv~l~~~~~kTkv~~~-t~~P~~~~~~ 477 (477)
|.|.|+|.+|++|+. .+.+||||++.+++++.||+++++ ++||.||+.|
T Consensus 2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F 53 (121)
T cd04016 2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTI 53 (121)
T ss_pred cEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEE
Confidence 789999999999875 378999999999999999999876 7999999653
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.7e-09 Score=88.70 Aligned_cols=61 Identities=21% Similarity=0.197 Sum_probs=52.1
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~-- 457 (477)
.|+|+++++|.+ ..+.|.|+|.+|+||+. ++.+||||++.+..
T Consensus 2 ~G~l~~sl~Y~~--------------------------------~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~ 49 (124)
T cd08389 2 CGDLDVAFEYDP--------------------------------SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSK 49 (124)
T ss_pred CEEEEEEEEECC--------------------------------CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCC
Confidence 699999999987 67899999999999986 46899999988743
Q ss_pred -eEeeeeeeeeccCccceec
Q 011813 458 -DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 -~~~kTkv~~~t~~P~~~~~ 476 (477)
+++||+++++ +||.||+.
T Consensus 50 ~~~~kTkv~~~-~nP~fnE~ 68 (124)
T cd08389 50 KQRAKTKVQRG-PNPVFNET 68 (124)
T ss_pred cceeecccccC-CCCcccCE
Confidence 4559999887 99999964
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.6e-09 Score=89.09 Aligned_cols=61 Identities=26% Similarity=0.414 Sum_probs=53.2
Q ss_pred eEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe--
Q 011813 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD-- 458 (477)
Q Consensus 384 G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~-- 458 (477)
|+|++.++|.+ ..+.|.|+|++|+||+. .+.+||||++++.+.
T Consensus 1 G~i~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~ 48 (134)
T cd00276 1 GELLLSLSYLP--------------------------------TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGK 48 (134)
T ss_pred CeEEEEEEeeC--------------------------------CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCe
Confidence 89999999987 56899999999999986 468999999999653
Q ss_pred ---EeeeeeeeeccCccceec
Q 011813 459 ---KKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 459 ---~~kTkv~~~t~~P~~~~~ 476 (477)
++||++++++.+|.||..
T Consensus 49 ~~~~~~T~~~~~~~~P~wne~ 69 (134)
T cd00276 49 KLKKKKTSVKKGTLNPVFNEA 69 (134)
T ss_pred EeeeecCcceecCCCCeeeee
Confidence 459999999999999964
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.7e-09 Score=86.90 Aligned_cols=47 Identities=17% Similarity=0.185 Sum_probs=42.9
Q ss_pred EEEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 430 ~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
.|.|+|++|+||+. .+.+||||+++++++++||+++++|.+|.||..
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~ 50 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEG 50 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccce
Confidence 38999999999986 468999999999999999999999999999964
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.7e-09 Score=86.50 Aligned_cols=49 Identities=20% Similarity=0.058 Sum_probs=45.1
Q ss_pred cceEEEEEEeeeecCCCCCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
....|+|.|++|+||+ ++.+||||+++++++++||+++++|++|.||..
T Consensus 2 ~~~~l~V~v~~a~~L~-~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~ 50 (111)
T cd04011 2 QDFQVRVRVIEARQLV-GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEY 50 (111)
T ss_pred CcEEEEEEEEEcccCC-CCCCCCEEEEEECCEeeeeeEEeccCCCccccE
Confidence 4578999999999999 678999999999999999999999999999965
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.9e-09 Score=86.29 Aligned_cols=48 Identities=17% Similarity=0.204 Sum_probs=43.1
Q ss_pred eEEEEEEeeeecCCCC-------CCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 429 GLLSVLVQGAEDVEGE-------NHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 429 g~L~V~V~~A~~L~~~-------~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
|+|.|+|.+|+||+.. +.+||||++++++++.||+++++|+||.||..
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~ 55 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNER 55 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccce
Confidence 7899999999999852 24899999999998889999999999999964
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=98.77 E-value=7e-09 Score=88.85 Aligned_cols=46 Identities=22% Similarity=0.185 Sum_probs=41.9
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 431 LSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 431 L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
++|+|++|+||+. .+.+||||++++++++.||+++++|+||.||..
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~ 49 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEE 49 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCce
Confidence 5799999999985 468999999999999999999999999999964
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-08 Score=87.32 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=45.6
Q ss_pred cceEEEEEEeeeecCCC--CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEG--ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~--~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
..|.|.|+|++|+||+. .+.+||||++++++++.||+++++|.||.||+.
T Consensus 26 ~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~ 77 (127)
T cd04032 26 GLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNAT 77 (127)
T ss_pred CcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCE
Confidence 67999999999999985 457999999999999889999999999999954
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-08 Score=87.32 Aligned_cols=47 Identities=26% Similarity=0.315 Sum_probs=42.9
Q ss_pred EEEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 430 ~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
+|+|+|++|+||+. .+.+||||+++++++++||+++++|+||.||..
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~ 50 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEK 50 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceE
Confidence 48999999999975 468999999999999999999999999999964
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.3e-08 Score=85.95 Aligned_cols=47 Identities=21% Similarity=0.167 Sum_probs=39.5
Q ss_pred EEEEEEeeeecCCCC--CCCCcEEEEEEcC-------eEeeeeeeeeccCccceec
Q 011813 430 LLSVLVQGAEDVEGE--NHNNPYAIILYKG-------DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 430 ~L~V~V~~A~~L~~~--~~~DPyvkv~l~~-------~~~kTkv~~~t~~P~~~~~ 476 (477)
+|+|+|.+|+||+.. |.+||||+|++.+ +++||+++.+|+||.||+.
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~ 56 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNET 56 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcE
Confidence 489999999999873 7899999999832 2348999999999999954
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.8e-08 Score=87.50 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=46.0
Q ss_pred cceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
..|.|+|+|++|+||+. .+.+||||++++++++.||+++++|+||.||..
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~ 65 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSS 65 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCce
Confidence 67999999999999975 468999999999999999999999999999964
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.5e-08 Score=103.29 Aligned_cols=123 Identities=26% Similarity=0.363 Sum_probs=95.3
Q ss_pred EEccccccccccCCCCcEEEEEEcCc-ccCceeeeeeCCCCCCeeeeEEEEEeecC---------------CCCeEEEEE
Q 011813 271 VRASKLLKKDFLGTSDPYVKLSLTGE-KLPWKKTTVKKKNLNPEWNENFKLVVKEP---------------ESQILQLQV 334 (477)
Q Consensus 271 ~~A~~L~~~d~~g~~dpyv~v~l~~~-~~~~~kT~v~~~t~nP~WnE~f~f~v~~~---------------~~~~L~v~V 334 (477)
++++++-+.+ ++.+|||+.+...+. +...++|++++.|.+|.|||.|.|.+... ..-.+++++
T Consensus 138 L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~l 216 (800)
T KOG2059|consen 138 LKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDL 216 (800)
T ss_pred hhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEee
Confidence 4444555544 466999999998654 32346899999999999999999998744 244688999
Q ss_pred Ee-cCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 335 FD-WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 335 ~d-~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
|+ .+....++|+|++.+++..+........|+.|.+..+......+..-|.+++.++|.-
T Consensus 217 W~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 217 WNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred ccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence 99 5566679999999999999886667778888877755555556778899999999874
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.6e-08 Score=99.61 Aligned_cols=121 Identities=26% Similarity=0.381 Sum_probs=97.7
Q ss_pred eEEEEEEEEcccccccccc-CCCCcEEEEEEcCcccCceeeeeeCCCCCCeee-eEEEEEeecC--CCCeEEEEEEecCC
Q 011813 264 GILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWN-ENFKLVVKEP--ESQILQLQVFDWDK 339 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~-g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~Wn-E~f~f~v~~~--~~~~L~v~V~d~d~ 339 (477)
|.|.|+|..|++|+.+|.. ...|.||.+++.+... +|.+..+++||.|| +.|.|.+.+. ....|.+++.|+|.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~---ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTF---KTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccce---ehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 7899999999999998864 4579999999997664 89999999999999 7889998754 36789999999999
Q ss_pred CCCCCeeEEEEEECcccCCC----------CceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 340 VGGHDRLGMQLVPLKLLTPH----------ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 340 ~~~d~~lG~~~v~L~~l~~~----------~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
.+.+|-||.+.++++.+... ....-|++....+ ...+|+|.+-+..--
T Consensus 80 ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-------hgirgeinvivkvdl 137 (1169)
T KOG1031|consen 80 YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-------HGIRGEINVIVKVDL 137 (1169)
T ss_pred cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-------ccccceeEEEEEEee
Confidence 99999999999999876422 1235777765432 346888887666443
|
|
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.5e-08 Score=84.32 Aligned_cols=48 Identities=23% Similarity=0.160 Sum_probs=43.8
Q ss_pred eEEEEEEeeeecCCCCCCCCcEEEEEEcCeEeeeeeeeeccCccceecC
Q 011813 429 GLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 429 g~L~V~V~~A~~L~~~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~~ 477 (477)
+.|.|.|.+||+|+..+..||||++.+++++.||++.+++ ||.||.+|
T Consensus 2 ~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~~-nP~WnE~F 49 (127)
T cd08394 2 SLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRGS-QPCWEQDF 49 (127)
T ss_pred ceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCCC-CCceeeEE
Confidence 6899999999999988889999999999998899999885 99999654
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.1e-08 Score=101.43 Aligned_cols=126 Identities=25% Similarity=0.393 Sum_probs=95.7
Q ss_pred eEEEEEEEEccccccccccCCCCcEEEEEEcCccc---CceeeeeeCCCCCCeee-eEEEEEeecCCCCeEEEEEEecCC
Q 011813 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL---PWKKTTVKKKNLNPEWN-ENFKLVVKEPESQILQLQVFDWDK 339 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~---~~~kT~v~~~t~nP~Wn-E~f~f~v~~~~~~~L~v~V~d~d~ 339 (477)
-.|.|.|+.|++|+... .|...|||.+.+-+... ..++|.+..+.+||+|| |.|+|.+.++.-.-|++.|||.|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 46889999999999544 35667999999865432 23566778899999999 999999999988899999999999
Q ss_pred CCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEecccC
Q 011813 340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKED 398 (477)
Q Consensus 340 ~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~~ 398 (477)
++...|||++.+|+..+..+-. ..+|.... .+.-....|.+.+...|..+.
T Consensus 1144 fs~~~FiaqA~yPv~~ik~GfR---sVpLkN~y-----SEdlELaSLLv~i~m~~~~~~ 1194 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGFR---SVPLKNGY-----SEDLELASLLVFIEMRPVLES 1194 (1267)
T ss_pred cCCcceeeeeecchhhhhccce---eeecccCc-----hhhhhhhhheeeeEeccccCc
Confidence 9988999999999999986631 12221110 012234567888888886655
|
|
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.2e-08 Score=84.32 Aligned_cols=47 Identities=15% Similarity=0.272 Sum_probs=42.8
Q ss_pred EEEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 430 ~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
+++|+|++|+||+. .+.+||||++++++++.||+++++|+||.||..
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~ 50 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQ 50 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEE
Confidence 47899999999986 468999999999999999999999999999964
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.6e-08 Score=86.03 Aligned_cols=47 Identities=19% Similarity=0.100 Sum_probs=43.3
Q ss_pred EEEEEEeeeecCCCCCCCCcEEEEEEcCeEeeeeeeeeccCccceecC
Q 011813 430 LLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 430 ~L~V~V~~A~~L~~~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~~ 477 (477)
.|+|+|++|+||+.. .+||||+++++++++||+++++|+||.||.+|
T Consensus 1 ~L~V~Vi~a~~L~~~-~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F 47 (121)
T cd08378 1 YLYVRVVKARGLPAN-SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVF 47 (121)
T ss_pred CEEEEEEEecCCCcc-cCCCEEEEEECCccccccccCCCCCCccceEE
Confidence 389999999999988 89999999999998899999999999999653
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=98.66 E-value=4e-08 Score=86.06 Aligned_cols=48 Identities=23% Similarity=0.321 Sum_probs=44.2
Q ss_pred eEEEEEEeeeecCCC--CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 429 GLLSVLVQGAEDVEG--ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 429 g~L~V~V~~A~~L~~--~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
|.|+|.|++|+||+. .+.+||||++++++++.||+++++|+||.||..
T Consensus 2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~ 51 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEE 51 (145)
T ss_pred eEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeeccc
Confidence 789999999999975 357999999999999999999999999999964
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.5e-08 Score=82.49 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=41.4
Q ss_pred eEEEEEEeeeecCCC---C-CCCCcEEEEEEcC---eEeeeeeeeeccCccceec
Q 011813 429 GLLSVLVQGAEDVEG---E-NHNNPYAIILYKG---DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 429 g~L~V~V~~A~~L~~---~-~~~DPyvkv~l~~---~~~kTkv~~~t~~P~~~~~ 476 (477)
|.|+|+|++|+||+. . +.+||||++++.+ ...||+++++|+||.||..
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~ 55 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEET 55 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCcccee
Confidence 689999999999985 3 6899999999853 3459999999999999954
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.2e-08 Score=84.02 Aligned_cols=48 Identities=25% Similarity=0.223 Sum_probs=41.6
Q ss_pred ceEEEEEEeeeecCCCCCCCCcEEEEEEcCeE-eeeeeeeeccCccceec
Q 011813 428 AGLLSVLVQGAEDVEGENHNNPYAIILYKGDK-KRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 428 ~g~L~V~V~~A~~L~~~~~~DPyvkv~l~~~~-~kTkv~~~t~~P~~~~~ 476 (477)
...|+|+|.+|+||+.++.+||||++++++.+ .||+++ +++||.||..
T Consensus 3 ~~~L~V~Vi~A~~L~~~~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~ 51 (126)
T cd08400 3 VRSLQLNVLEAHKLPVKHVPHPYCVISLNEVKVARTKVR-EGPNPVWSEE 51 (126)
T ss_pred eeEEEEEEEEeeCCCCCCCCCeeEEEEECCEeEEEeecC-CCCCCccCCE
Confidence 45799999999999998899999999998855 489874 6899999964
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.6e-08 Score=84.17 Aligned_cols=48 Identities=25% Similarity=0.414 Sum_probs=42.2
Q ss_pred eEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeeee-ccCccceec
Q 011813 429 GLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSFL-SLLYTYSLQ 476 (477)
Q Consensus 429 g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~~-t~~P~~~~~ 476 (477)
|.|+|+|.+|+||+. .+.+||||+++++++++||+++++ ++||.||..
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~ 52 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEE 52 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCce
Confidence 689999999999986 468999999999999899999864 799999954
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.8e-08 Score=83.66 Aligned_cols=50 Identities=26% Similarity=0.325 Sum_probs=45.4
Q ss_pred ceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeeeeccCccceecC
Q 011813 428 AGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 428 ~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~~ 477 (477)
.++|+|+|++|++|.+ .+.+||||++++++++.||+++++|.+|.||.++
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f 54 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQA 54 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceE
Confidence 4689999999999986 4689999999999999999999999999999653
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.2e-08 Score=81.86 Aligned_cols=45 Identities=22% Similarity=0.216 Sum_probs=40.5
Q ss_pred EEEEEeeeecCCC----CCCCCcEEEEEEcCeEeeeeeeeeccCccc-ee
Q 011813 431 LSVLVQGAEDVEG----ENHNNPYAIILYKGDKKRTKVSFLSLLYTY-SL 475 (477)
Q Consensus 431 L~V~V~~A~~L~~----~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~-~~ 475 (477)
|.|+|++|+||+. .+.+||||++++++++.||+++++|+||.| |+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne 50 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSE 50 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCc
Confidence 6899999999975 357999999999998889999999999999 64
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.9e-08 Score=82.53 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=42.0
Q ss_pred eEEEEEEeeeecCCC---CCCCCcEEEEEEcC-----eEeeeeeeeeccCccceec
Q 011813 429 GLLSVLVQGAEDVEG---ENHNNPYAIILYKG-----DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 429 g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~-----~~~kTkv~~~t~~P~~~~~ 476 (477)
+.|+|.|++|+||+. .+.+||||++.+.+ .++||+++++|.+|.||..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~ 68 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNET 68 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccce
Confidence 789999999999985 46799999999964 5669999999999999954
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.2e-08 Score=84.01 Aligned_cols=47 Identities=19% Similarity=0.260 Sum_probs=43.2
Q ss_pred EEEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 430 ~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
.|+|+|++|+||+. .+.+||||+++++++++||+++++|+||.||..
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~ 51 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQT 51 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcE
Confidence 68999999999986 468999999999999999999999999999853
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.6e-08 Score=82.86 Aligned_cols=48 Identities=25% Similarity=0.360 Sum_probs=43.7
Q ss_pred eEEEEEEeeeecCCC-----CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 429 GLLSVLVQGAEDVEG-----ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 429 g~L~V~V~~A~~L~~-----~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
|.|+|.|++|+||+. .+.+||||++++++++.||+++++|.+|.||.+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~ 53 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYW 53 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCc
Confidence 689999999999974 467999999999999999999999999999964
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=98.59 E-value=6e-08 Score=82.62 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=42.4
Q ss_pred EEEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 430 ~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
+|+|+|.+|+||+. .+.+||||++++++.+.||+++++|+||.||..
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~ 50 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEV 50 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcE
Confidence 48999999999986 357999999999999999999999999999954
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.5e-08 Score=81.12 Aligned_cols=45 Identities=20% Similarity=0.278 Sum_probs=38.5
Q ss_pred EEEEEeeeecCCCCCCCCcEEEEEEcC-----eEeeeeeeeeccCccceecC
Q 011813 431 LSVLVQGAEDVEGENHNNPYAIILYKG-----DKKRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 431 L~V~V~~A~~L~~~~~~DPyvkv~l~~-----~~~kTkv~~~t~~P~~~~~~ 477 (477)
|.|+|++|+||++ .+||||++.++. .+.|||++++|+||.||+.+
T Consensus 1 L~V~V~~A~~L~~--~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F 50 (118)
T cd08686 1 LNVIVHSAQGFKQ--SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEF 50 (118)
T ss_pred CEEEEEeCCCCCC--CCCCEEEEEEcCccccceeeeeeeecCCCCCccceEE
Confidence 6899999999975 699999999863 24599999999999999653
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.9e-08 Score=81.63 Aligned_cols=48 Identities=17% Similarity=0.309 Sum_probs=43.5
Q ss_pred eEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 429 GLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 429 g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
|.|.|+|++|+||+. .+.+||||++++++.+.||+++++|.||.||..
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~ 51 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKI 51 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcE
Confidence 689999999999986 467999999999998899999999999999853
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.9e-07 Score=96.99 Aligned_cols=123 Identities=15% Similarity=0.235 Sum_probs=92.2
Q ss_pred CCceEEEEEEEEccccccc----ccc-CCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEE
Q 011813 261 KPVGILHVKVVRASKLLKK----DFL-GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF 335 (477)
Q Consensus 261 ~~~G~L~V~v~~A~~L~~~----d~~-g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~ 335 (477)
.-.|.|.++|.+|+-+... +.. ...||||.+.+++.+. .|| .+..||.|||+|.+.+.......+.|.|.
T Consensus 7 ~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v--~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk 81 (758)
T PLN02352 7 FFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKV--AKT---SHEYDRVWNQTFQILCAHPLDSTITITLK 81 (758)
T ss_pred ccccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEE--ecC---CCCCCCccccceeEEeeeecCCcEEEEEe
Confidence 3469999999999843221 111 1239999999997654 466 55669999999999997655457999998
Q ss_pred ecCCCCCCCeeEEEEEECcccCCCCc-eEEEEecccccCCCCCCCCccc-eEEEEEEEEEecccCc
Q 011813 336 DWDKVGGHDRLGMQLVPLKLLTPHET-KEFTLDLLKHTNISDPKDMKQR-GKIVVELTYVPFKEDS 399 (477)
Q Consensus 336 d~d~~~~d~~lG~~~v~L~~l~~~~~-~~~~~~l~~~~~~~~~~~~~~~-G~l~l~l~y~p~~~~~ 399 (477)
| ...+||.+.+|..++..++. .+.|+++...- +.... ..|++++.|.|...++
T Consensus 82 ~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~------~~p~~~~~~~~~~~~~~~~~~~ 136 (758)
T PLN02352 82 T-----KCSILGRFHIQAHQIVTEASFINGFFPLIMEN------GKPNPELKLRFMLWFRPAELEP 136 (758)
T ss_pred c-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCC------CCCCCCCEEEEEEEEEEhhhCc
Confidence 8 25799999999999988865 88899886531 12223 5999999999987763
|
|
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.9e-08 Score=81.45 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=43.2
Q ss_pred eEEEEEEeeeecCCCC---------CCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 429 GLLSVLVQGAEDVEGE---------NHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 429 g~L~V~V~~A~~L~~~---------~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
|.|.|.|++|+||+.. +.+||||+++++++..||+++++|.+|.||..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~ 57 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEV 57 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccce
Confidence 6799999999999852 47999999999998889999999999999954
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-07 Score=80.80 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=40.6
Q ss_pred EEEEEeeeecCCC----CCCCCcEEEEEEcCeE-eeeeeeeeccCccceecC
Q 011813 431 LSVLVQGAEDVEG----ENHNNPYAIILYKGDK-KRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 431 L~V~V~~A~~L~~----~~~~DPyvkv~l~~~~-~kTkv~~~t~~P~~~~~~ 477 (477)
|.|.|.+|+||+. ++.+||||++++++++ .||+++++|+||.||.++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F 53 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDF 53 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeE
Confidence 6799999999986 2579999999998764 599999999999999653
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.5e-07 Score=80.63 Aligned_cols=48 Identities=23% Similarity=0.260 Sum_probs=43.1
Q ss_pred eEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 429 GLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 429 g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
+.|+|.|++|++|+. .+.+||||++++++++.||+++++|++|.||..
T Consensus 1 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~ 51 (127)
T cd04027 1 AKISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEK 51 (127)
T ss_pred CeEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceE
Confidence 368999999999986 467999999999998889999999999999954
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.8e-07 Score=83.37 Aligned_cols=50 Identities=24% Similarity=0.317 Sum_probs=43.0
Q ss_pred ceEEEEEEeeeecCCC---------------------------------CCCCCcEEEEEEcCeEe-eeeeeeeccCccc
Q 011813 428 AGLLSVLVQGAEDVEG---------------------------------ENHNNPYAIILYKGDKK-RTKVSFLSLLYTY 473 (477)
Q Consensus 428 ~g~L~V~V~~A~~L~~---------------------------------~~~~DPyvkv~l~~~~~-kTkv~~~t~~P~~ 473 (477)
-|.|.|+|++|++|+. .+.+||||++.+++.+. ||+++++|.||.|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 4899999999999974 24589999999998765 9999999999999
Q ss_pred eecC
Q 011813 474 SLQL 477 (477)
Q Consensus 474 ~~~~ 477 (477)
|..+
T Consensus 86 nE~F 89 (158)
T cd04015 86 NESF 89 (158)
T ss_pred ceEE
Confidence 9653
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.8e-07 Score=79.45 Aligned_cols=47 Identities=15% Similarity=0.338 Sum_probs=41.1
Q ss_pred EEEEEEeeeecCCC---CCCCCcEEEEEEcCe-EeeeeeeeeccCccceec
Q 011813 430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGD-KKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 430 ~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~-~~kTkv~~~t~~P~~~~~ 476 (477)
.|+|+|++|+||+. .+.+||||+++++++ ..||+++++|.||.||..
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~ 51 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEK 51 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCcccee
Confidence 38999999999986 468999999999884 559999999999999954
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=98.49 E-value=2e-07 Score=79.39 Aligned_cols=48 Identities=23% Similarity=0.337 Sum_probs=42.7
Q ss_pred eEEEEEEeeeecCCC----CCCCCcEEEEEEcC--eEeeeeeeeeccCccceec
Q 011813 429 GLLSVLVQGAEDVEG----ENHNNPYAIILYKG--DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 429 g~L~V~V~~A~~L~~----~~~~DPyvkv~l~~--~~~kTkv~~~t~~P~~~~~ 476 (477)
|.|.|+|++|+||+. .+.+||||++.+++ ++.||+++++|++|.||..
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~ 55 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNET 55 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEE
Confidence 789999999999985 24689999999988 6779999999999999965
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.3e-07 Score=80.13 Aligned_cols=50 Identities=16% Similarity=0.126 Sum_probs=43.5
Q ss_pred cceEEEEEEeeeecCCCC-------------CCCCcEEEEEEcCeEe-eeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEGE-------------NHNNPYAIILYKGDKK-RTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~~-------------~~~DPyvkv~l~~~~~-kTkv~~~t~~P~~~~~ 476 (477)
.+|.|+|+|++|+||... +.+||||++++++++. ||+++++|.+|.||..
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~ 65 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEE 65 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCccee
Confidence 368999999999999752 3689999999998764 9999999999999965
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.2e-07 Score=78.94 Aligned_cols=46 Identities=15% Similarity=0.293 Sum_probs=40.8
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcCeE-eeeeeeeeccCccceec
Q 011813 431 LSVLVQGAEDVEG---ENHNNPYAIILYKGDK-KRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 431 L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~-~kTkv~~~t~~P~~~~~ 476 (477)
|.|+|++|+||+. .+.+||||+++++++. .||+++++|+||.||..
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~ 51 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEE 51 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccce
Confidence 7899999999975 4689999999998865 49999999999999954
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=98.47 E-value=2e-07 Score=79.76 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=40.3
Q ss_pred EEEEEeeeecCCC-CCCCCcEEEEEEcC--eEeeeeeeeeccCccceec
Q 011813 431 LSVLVQGAEDVEG-ENHNNPYAIILYKG--DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 431 L~V~V~~A~~L~~-~~~~DPyvkv~l~~--~~~kTkv~~~t~~P~~~~~ 476 (477)
|.|.|++|+||+. .+.+||||++++++ ++.||+++++|+||.||..
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~ 49 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEH 49 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCce
Confidence 5799999999986 46899999999974 5679999999999999964
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-07 Score=79.36 Aligned_cols=46 Identities=24% Similarity=0.205 Sum_probs=40.1
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcC---eEeeeeeeeeccCccceec
Q 011813 431 LSVLVQGAEDVEG---ENHNNPYAIILYKG---DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 431 L~V~V~~A~~L~~---~~~~DPyvkv~l~~---~~~kTkv~~~t~~P~~~~~ 476 (477)
|+|+|++|+||+. .+.+||||++++++ +++||+++++|+||.||..
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~ 53 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNET 53 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceE
Confidence 7899999999986 36899999999964 5569999999999999954
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.4e-07 Score=102.41 Aligned_cols=108 Identities=26% Similarity=0.197 Sum_probs=89.1
Q ss_pred CceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEE-ee--cCCCCeEEEEEEe
Q 011813 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLV-VK--EPESQILQLQVFD 336 (477)
Q Consensus 262 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~-v~--~~~~~~L~v~V~d 336 (477)
..|+|.|-|..|++|+--.-+..+||||+.++.++ +..++||++.++|.||+|||...+. .+ ......|.++||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 36899999999999966555677999999999765 3446799999999999999988766 22 2235789999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 011813 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (477)
Q Consensus 337 ~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~ 369 (477)
.+....+.++|.+.++|.++...++..-|+.+.
T Consensus 1602 ~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred ccceeeeeeeeeeecchhhcchhhhhcceeecc
Confidence 999889999999999999998777766777663
|
|
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.2e-07 Score=79.22 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=40.6
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEc-CeEeeeeeeeeccCccceec
Q 011813 431 LSVLVQGAEDVEG---ENHNNPYAIILYK-GDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 431 L~V~V~~A~~L~~---~~~~DPyvkv~l~-~~~~kTkv~~~t~~P~~~~~ 476 (477)
|+|+|++|+||+. .+.+||||+++++ .+..||+++++|+||.||..
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~ 51 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEH 51 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccce
Confidence 7899999999986 3679999999997 56669999999999999954
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.7e-07 Score=77.65 Aligned_cols=45 Identities=18% Similarity=0.236 Sum_probs=40.7
Q ss_pred EEEEEeeeecCCCCCCCCcEEEEEEcCeE-eeeeeeeeccCccceec
Q 011813 431 LSVLVQGAEDVEGENHNNPYAIILYKGDK-KRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 431 L~V~V~~A~~L~~~~~~DPyvkv~l~~~~-~kTkv~~~t~~P~~~~~ 476 (477)
|.|+|++|+||+..+.+||||++++++++ .||+++++ ++|.||.+
T Consensus 2 L~v~vi~a~~l~~~~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~ 47 (117)
T cd08383 2 LRLRILEAKNLPSKGTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEE 47 (117)
T ss_pred eEEEEEEecCCCcCCCCCceEEEEECCEEeEecceEEC-CCCcccce
Confidence 78999999999988899999999999865 59999999 99999965
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.9e-08 Score=102.30 Aligned_cols=92 Identities=28% Similarity=0.388 Sum_probs=81.9
Q ss_pred eEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCC
Q 011813 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d 343 (477)
-..+|++++|-+|.+.|.+|.+|||+++.+|.... ..+...+.+|+||+|++.|++...-+....+.++|||+|..+.|
T Consensus 613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~-~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d 691 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRT-LDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQD 691 (1105)
T ss_pred eeEEEEEEEeeeccccCCCCCcCceeeeeeccchh-hhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccccc
Confidence 45679999999999999999999999999997653 24678889999999999999988777778899999999999999
Q ss_pred CeeEEEEEECccc
Q 011813 344 DRLGMQLVPLKLL 356 (477)
Q Consensus 344 ~~lG~~~v~L~~l 356 (477)
+.+|+..++|+.-
T Consensus 692 ~~iget~iDLEnR 704 (1105)
T KOG1326|consen 692 EKIGETTIDLENR 704 (1105)
T ss_pred chhhceehhhhhc
Confidence 9999999998763
|
|
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.1e-07 Score=77.90 Aligned_cols=48 Identities=25% Similarity=0.334 Sum_probs=42.2
Q ss_pred eEEEEEEeeeecCCC---CCCCCcEEEEEEcCe-EeeeeeeeeccCccceec
Q 011813 429 GLLSVLVQGAEDVEG---ENHNNPYAIILYKGD-KKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 429 g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~-~~kTkv~~~t~~P~~~~~ 476 (477)
|.|.|+|++|+||+. .+.+||||+++++++ +.||+++++|.+|.||..
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~ 52 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEV 52 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCce
Confidence 689999999999986 468999999999875 459999999999999954
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=98.35 E-value=6e-07 Score=77.50 Aligned_cols=47 Identities=21% Similarity=0.191 Sum_probs=40.8
Q ss_pred EEEEEEeeeecCCC---CCCCCcEEEEEEcCe-------EeeeeeeeeccCccceec
Q 011813 430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGD-------KKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 430 ~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~-------~~kTkv~~~t~~P~~~~~ 476 (477)
.|+|+|++|+||+. .+.+||||++++++. +.||+++++|.||.||..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~ 57 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEE 57 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeE
Confidence 38999999999986 367999999999765 459999999999999964
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.1e-07 Score=76.48 Aligned_cols=48 Identities=23% Similarity=0.347 Sum_probs=42.5
Q ss_pred eEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeeee-ccCccceec
Q 011813 429 GLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSFL-SLLYTYSLQ 476 (477)
Q Consensus 429 g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~~-t~~P~~~~~ 476 (477)
|.|.|+|++|+||+. .+.+||||++++++++++|++.++ +.+|.||..
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~ 52 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEK 52 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccce
Confidence 689999999999986 358999999999999899999884 899999953
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.4e-07 Score=76.45 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=40.5
Q ss_pred EEEEEEeeeecCCC---CCCCCcEEEEEEcCeEe--eeeeeeeccCccceec
Q 011813 430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGDKK--RTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 430 ~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~--kTkv~~~t~~P~~~~~ 476 (477)
.|+|.|++|+||+. .+.+||||++++++++. ||+++++|+||.||..
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~ 52 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKM 52 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceE
Confidence 37899999999986 46899999999998764 7888999999999853
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.9e-07 Score=76.36 Aligned_cols=47 Identities=15% Similarity=0.341 Sum_probs=40.6
Q ss_pred EEEEEEeeeecCCC---CCCCCcEEEEEEcCe---EeeeeeeeeccCccceec
Q 011813 430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGD---KKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 430 ~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~---~~kTkv~~~t~~P~~~~~ 476 (477)
.|+|+|.+|+||+. .+.+||||++++++. ..||+++++|++|.||..
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~ 54 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEE 54 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccce
Confidence 68999999999986 468999999998753 459999999999999854
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=98.33 E-value=7e-07 Score=78.79 Aligned_cols=50 Identities=20% Similarity=0.162 Sum_probs=43.0
Q ss_pred CcceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe-----------------------------EeeeeeeeeccCccc
Q 011813 426 SGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD-----------------------------KKRTKVSFLSLLYTY 473 (477)
Q Consensus 426 ~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~-----------------------------~~kTkv~~~t~~P~~ 473 (477)
+..+.|+|+|++|+||.. .+.+||||++++++. ..||+++++|++|.|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 378999999999999975 578999999999642 258999999999999
Q ss_pred ee
Q 011813 474 SL 475 (477)
Q Consensus 474 ~~ 475 (477)
|.
T Consensus 105 nE 106 (153)
T cd08676 105 NE 106 (153)
T ss_pred cc
Confidence 94
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.9e-06 Score=87.17 Aligned_cols=111 Identities=24% Similarity=0.341 Sum_probs=92.6
Q ss_pred ceEEEEEEEEccccccccccCCCCcEEEEEEcC----cccCceeeeeeCCCCCCeeeeEEEEEeec---CCCCeEEEEEE
Q 011813 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG----EKLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQVF 335 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~----~~~~~~kT~v~~~t~nP~WnE~f~f~v~~---~~~~~L~v~V~ 335 (477)
...++|+|+.|.+|+... .|.--|||.+.+.+ +++++..|+.+.++..|.+||+|+|.+.+ ++...|.+.|-
T Consensus 1124 ehkvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VK 1202 (1283)
T KOG1011|consen 1124 EHKVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVK 1202 (1283)
T ss_pred cceEEEEEEecccccchh-ccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeeh
Confidence 356788889999998754 67889999999843 34556778999999999999999999874 34668999999
Q ss_pred ecCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCC
Q 011813 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNI 374 (477)
Q Consensus 336 d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~ 374 (477)
|+.-.+.|..+|.+.++|.++........|++|.+++..
T Consensus 1203 DYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgrrihm 1241 (1283)
T KOG1011|consen 1203 DYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGRRIHM 1241 (1283)
T ss_pred hheeecccceeeeeeeehhhHhhcCceeEeeeccccccc
Confidence 998777788999999999999988888999999876654
|
|
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.3e-06 Score=75.76 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=40.2
Q ss_pred EEEEEEeeeecCCC--CCCCCcEEEEEEcC-------------eEeeeeeeeeccCccc-eecC
Q 011813 430 LLSVLVQGAEDVEG--ENHNNPYAIILYKG-------------DKKRTKVSFLSLLYTY-SLQL 477 (477)
Q Consensus 430 ~L~V~V~~A~~L~~--~~~~DPyvkv~l~~-------------~~~kTkv~~~t~~P~~-~~~~ 477 (477)
..+|++.+|+||+. .+.+||||++++.+ +++||+++++|+||.| |+++
T Consensus 2 ~~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f 65 (137)
T cd08691 2 SFSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQF 65 (137)
T ss_pred EEEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEE
Confidence 46789999999985 36899999999952 3579999999999999 7653
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.4e-06 Score=83.35 Aligned_cols=96 Identities=34% Similarity=0.403 Sum_probs=80.2
Q ss_pred cccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEee--cCCCCeEEEE
Q 011813 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVK--EPESQILQLQ 333 (477)
Q Consensus 258 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~ 333 (477)
.+.....-|.|++++|..|..+|.+|.+||||..++.+. ..-+++|.+.++|.||.||+.|.+.+. +.....+.|.
T Consensus 227 ~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~ls 306 (362)
T KOG1013|consen 227 AYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALS 306 (362)
T ss_pred ccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEe
Confidence 455667889999999999999999999999999999754 233578999999999999999999886 3346789999
Q ss_pred EEecCCCCCCCeeEEEEEEC
Q 011813 334 VFDWDKVGGHDRLGMQLVPL 353 (477)
Q Consensus 334 V~d~d~~~~d~~lG~~~v~L 353 (477)
|||++..+..+++|-+...+
T Consensus 307 vgd~~~G~s~d~~GG~~~g~ 326 (362)
T KOG1013|consen 307 VGDYDIGKSNDSIGGSMLGG 326 (362)
T ss_pred ecccCCCcCccCCCcccccc
Confidence 99999776788988876543
|
|
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.4e-07 Score=87.49 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=42.0
Q ss_pred ceEEEEEEeeeecCCC---CCCCCcEEEEEEc-----CeEeeeeeeeeccCcccee
Q 011813 428 AGLLSVLVQGAEDVEG---ENHNNPYAIILYK-----GDKKRTKVSFLSLLYTYSL 475 (477)
Q Consensus 428 ~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~-----~~~~kTkv~~~t~~P~~~~ 475 (477)
...|+|+|.+|+||-. +|.+||||++.+- ..|+|||+++.|+||+||.
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNE 234 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNE 234 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccc
Confidence 4589999999999964 8999999999983 3556999999999999995
|
|
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.3e-06 Score=75.84 Aligned_cols=46 Identities=28% Similarity=0.279 Sum_probs=41.0
Q ss_pred EEEEEeeeecCCC--CCCCCcEEEEEEc----CeEeeeeeeeeccCccceec
Q 011813 431 LSVLVQGAEDVEG--ENHNNPYAIILYK----GDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 431 L~V~V~~A~~L~~--~~~~DPyvkv~l~----~~~~kTkv~~~t~~P~~~~~ 476 (477)
|+|.|++|+||+. .+.+||||+++++ +.++||+++++|.+|.||..
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~ 52 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEA 52 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceE
Confidence 5799999999985 4789999999998 67779999999999999864
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.9e-07 Score=103.57 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=46.5
Q ss_pred cceEEEEEEeeeecCCCC-CCCCcEEEEEEcCe-EeeeeeeeeccCccceecC
Q 011813 427 GAGLLSVLVQGAEDVEGE-NHNNPYAIILYKGD-KKRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~~-~~~DPyvkv~l~~~-~~kTkv~~~t~~P~~~~~~ 477 (477)
-.|.|+|+|++|+||.++ +++||||++++|++ ++|||++++|.||.||.+|
T Consensus 1978 ~~G~L~V~V~~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f 2030 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGF 2030 (2102)
T ss_pred CCcceEEEEeeccccccccCCCCCeEEEEECCCCcccccccCCCCCCCcccce
Confidence 579999999999999975 89999999999965 7799999999999999764
|
|
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=98.18 E-value=2e-06 Score=67.40 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=41.8
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcC---eEeeeeeeeeccCccceec
Q 011813 431 LSVLVQGAEDVEG---ENHNNPYAIILYKG---DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 431 L~V~V~~A~~L~~---~~~~DPyvkv~l~~---~~~kTkv~~~t~~P~~~~~ 476 (477)
|+|+|++|+||+. .+.+||||++++++ ...||++++.+.+|.|+.+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~ 52 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEE 52 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeee
Confidence 7899999999987 46899999999988 6789999999999999965
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.6e-06 Score=73.97 Aligned_cols=46 Identities=22% Similarity=0.221 Sum_probs=40.2
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcC-eEeeeeeee-eccCccceec
Q 011813 431 LSVLVQGAEDVEG---ENHNNPYAIILYKG-DKKRTKVSF-LSLLYTYSLQ 476 (477)
Q Consensus 431 L~V~V~~A~~L~~---~~~~DPyvkv~l~~-~~~kTkv~~-~t~~P~~~~~ 476 (477)
|+|+|++|+||+. .+.+||||++++++ ++++|++.+ ++.+|.||..
T Consensus 2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~ 52 (125)
T cd04051 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNET 52 (125)
T ss_pred EEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCE
Confidence 7899999999986 46899999999988 788999976 5899999864
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=98.15 E-value=2e-06 Score=73.69 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=38.3
Q ss_pred EeeeecCCC-CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 435 VQGAEDVEG-ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 435 V~~A~~L~~-~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
|.+|+||+. .+.+||||++++++.++||++++++.||.||..
T Consensus 2 vi~a~~L~~~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~ 44 (127)
T cd08373 2 VVSLKNLPGLKGKGDRIAKVTFRGVKKKTRVLENELNPVWNET 44 (127)
T ss_pred eEEeeCCcccCCCCCCEEEEEECCEeeecceeCCCcCCcccce
Confidence 689999988 678999999999999999999999999999853
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.6e-06 Score=71.47 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=39.6
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcCeE-eeeeeeeeccCccceec
Q 011813 431 LSVLVQGAEDVEG---ENHNNPYAIILYKGDK-KRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 431 L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~-~kTkv~~~t~~P~~~~~ 476 (477)
|+|.|++|+||+. .+.+||||++++++++ .||+++.++.+|.||..
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~ 50 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNES 50 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCccccc
Confidence 5799999999986 3579999999997644 59999999999999953
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=98.09 E-value=5e-06 Score=71.02 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=40.3
Q ss_pred EEEEEEeeeecCCC--CCCCCcEEEEEEcCe-EeeeeeeeeccCccceec
Q 011813 430 LLSVLVQGAEDVEG--ENHNNPYAIILYKGD-KKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 430 ~L~V~V~~A~~L~~--~~~~DPyvkv~l~~~-~~kTkv~~~t~~P~~~~~ 476 (477)
.|.|+|.+|+.+.. .+.+||||+++++++ ..||+++++|.+|.||..
T Consensus 3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~ 52 (125)
T cd04021 3 QLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEH 52 (125)
T ss_pred eEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccE
Confidence 68999999995544 357999999999988 779999999999999954
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.4e-06 Score=73.71 Aligned_cols=40 Identities=20% Similarity=0.365 Sum_probs=34.4
Q ss_pred eeeecCCCCCCCCcEEEEEEcCeEeeeeeeeeccCccceecC
Q 011813 436 QGAEDVEGENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 436 ~~A~~L~~~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~~ 477 (477)
..++|.- +++||||.+.+|+++.||+++++|+||.||..|
T Consensus 18 L~~rD~~--~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~l 57 (168)
T KOG1030|consen 18 LAIRDFL--GSSDPYVVLELGNQKLKTRVVYKNLNPEWNEEL 57 (168)
T ss_pred eeeeccc--cCCCCeEEEEECCeeeeeeeecCCCCCcccceE
Confidence 4455664 479999999999999999999999999999654
|
|
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=98.03 E-value=8.8e-06 Score=71.03 Aligned_cols=49 Identities=10% Similarity=0.089 Sum_probs=43.3
Q ss_pred cceEEEEEEeeeecCCCCCCCCcEEEEEEcCeEe-eeeeeeeccCccceecC
Q 011813 427 GAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKK-RTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~~~~~DPyvkv~l~~~~~-kTkv~~~t~~P~~~~~~ 477 (477)
....|.|.|.+|++|+.. .||||.+.+++.+. ||+++.++.||.|++.|
T Consensus 9 ~~~sL~v~V~EAk~Lp~~--~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F 58 (146)
T cd04013 9 TENSLKLWIIEAKGLPPK--KRYYCELCLDKTLYARTTSKLKTDTLFWGEHF 58 (146)
T ss_pred EEEEEEEEEEEccCCCCc--CCceEEEEECCEEEEEEEEEcCCCCCcceeeE
Confidence 467899999999999985 48999999999987 99999999999998543
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=98.01 E-value=6.9e-06 Score=72.44 Aligned_cols=48 Identities=8% Similarity=-0.030 Sum_probs=34.4
Q ss_pred eEEEEEEeeeecCCC---CCCCCcEEEEEE--c---CeEeeeeeeeeccCccceec
Q 011813 429 GLLSVLVQGAEDVEG---ENHNNPYAIILY--K---GDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 429 g~L~V~V~~A~~L~~---~~~~DPyvkv~l--~---~~~~kTkv~~~t~~P~~~~~ 476 (477)
+.|+|....+-+|+. ++.+||||++++ . .++.||+++++|+||.||+.
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~ 59 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNES 59 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccce
Confidence 344444433333655 468999999997 2 35669999999999999965
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.91 E-value=6.6e-05 Score=77.31 Aligned_cols=135 Identities=20% Similarity=0.235 Sum_probs=95.3
Q ss_pred eeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCC----CCCCeeEEEEEECcccCCCCceEEEEecccccCCCC
Q 011813 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV----GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISD 376 (477)
Q Consensus 301 ~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~----~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~ 376 (477)
.+|.++.+.+||.|-+.|.+...-...|.++++++|.+.. ..++++|++...+..+.........+-+..
T Consensus 43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~------ 116 (529)
T KOG1327|consen 43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKP------ 116 (529)
T ss_pred cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhccc------
Confidence 4889999999999999988887766789999999998743 457899999999998875533222222211
Q ss_pred CCCCccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEE
Q 011813 377 PKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAII 453 (477)
Q Consensus 377 ~~~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv 453 (477)
......|.|.+..+-.- +......-.++|++|+. .+++|||..+
T Consensus 117 -~~~~~~g~iti~aee~~--------------------------------~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~ 163 (529)
T KOG1327|consen 117 -GKNAGSGTITISAEEDE--------------------------------SDNDVVQFSFRAKNLDPKDFFSKSDPYLEF 163 (529)
T ss_pred -CccCCcccEEEEeeccc--------------------------------ccCceeeeeeeeeecCcccccccCCcceEE
Confidence 12345677776654321 12223334456899986 3689999999
Q ss_pred EEc--C-eEe---eeeeeeeccCccce
Q 011813 454 LYK--G-DKK---RTKVSFLSLLYTYS 474 (477)
Q Consensus 454 ~l~--~-~~~---kTkv~~~t~~P~~~ 474 (477)
+-. . ... ||.+.++|++|.|.
T Consensus 164 ~~~~~d~s~~~~~~tEv~~n~l~p~w~ 190 (529)
T KOG1327|consen 164 YKRVDDGSTQMLYRTEVVKNTLNPQWA 190 (529)
T ss_pred EEecCCCceeeccccceeccCCCCccc
Confidence 753 2 222 99999999999997
|
|
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.5e-05 Score=67.51 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=36.2
Q ss_pred EEeeeecCCC---CCCCCcEEEEEEcCeE-------eeeeeeeeccCccceec
Q 011813 434 LVQGAEDVEG---ENHNNPYAIILYKGDK-------KRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 434 ~V~~A~~L~~---~~~~DPyvkv~l~~~~-------~kTkv~~~t~~P~~~~~ 476 (477)
..++|++|+. .+.+||||++++.+.. .||+++++|+||.||..
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~ 57 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTT 57 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEE
Confidence 4479999976 4679999999997753 69999999999999953
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.89 E-value=9.8e-06 Score=62.73 Aligned_cols=91 Identities=20% Similarity=0.239 Sum_probs=66.7
Q ss_pred EEEEEEccccccccccCC-CCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEee--cCCCCeEEEEEEecCCCCCC
Q 011813 267 HVKVVRASKLLKKDFLGT-SDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK--EPESQILQLQVFDWDKVGGH 343 (477)
Q Consensus 267 ~V~v~~A~~L~~~d~~g~-~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~d~~~~d 343 (477)
-+++++|+||.-....|. +.-|++--+.-.+--..||+++++..||+|+|+|.|.+. +...-.|.+.|+. ...+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 378899999876543332 344665444322222468999999999999999999875 3446678899998 45678
Q ss_pred CeeEEEEEECcccCCC
Q 011813 344 DRLGMQLVPLKLLTPH 359 (477)
Q Consensus 344 ~~lG~~~v~L~~l~~~ 359 (477)
+.||.|.+.|+++..+
T Consensus 80 e~iG~~sL~l~s~gee 95 (103)
T cd08684 80 RTIGECSLSLRTLSTQ 95 (103)
T ss_pred ceeeEEEeecccCCHH
Confidence 8999999999998754
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.9e-05 Score=67.47 Aligned_cols=48 Identities=15% Similarity=0.097 Sum_probs=39.2
Q ss_pred eEEEEEEeeeecCCC-----CCCCCcEEEEEEc------CeEeeeeeeeecc-Cccceec
Q 011813 429 GLLSVLVQGAEDVEG-----ENHNNPYAIILYK------GDKKRTKVSFLSL-LYTYSLQ 476 (477)
Q Consensus 429 g~L~V~V~~A~~L~~-----~~~~DPyvkv~l~------~~~~kTkv~~~t~-~P~~~~~ 476 (477)
-.|+|+|++|+||+. .+.+||||++++. ..+.||++++++. +|.||..
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~ 61 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNET 61 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCc
Confidence 368999999999975 3579999999994 4556999988776 9999853
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.6e-05 Score=64.86 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=35.1
Q ss_pred EEEeeeecCCC---CCCCCcEEEEEEcCe------EeeeeeeeeccCccce
Q 011813 433 VLVQGAEDVEG---ENHNNPYAIILYKGD------KKRTKVSFLSLLYTYS 474 (477)
Q Consensus 433 V~V~~A~~L~~---~~~~DPyvkv~l~~~------~~kTkv~~~t~~P~~~ 474 (477)
+..++|++|+. .+.+||||++++.+. ..||+++++|++|.||
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn 54 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK 54 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE
Confidence 44569999986 468999999998654 3599999999999998
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.3e-05 Score=83.66 Aligned_cols=93 Identities=18% Similarity=0.308 Sum_probs=76.1
Q ss_pred cccCCceEEEEEEEEccccccccccCCCCcEEEE-EEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEe
Q 011813 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKL-SLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFD 336 (477)
Q Consensus 258 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v-~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d 336 (477)
..+.-.|+..+++++|+ ++ ..|+|..+ .+|.+. .||.+.++|.||+|||...|.+...+....++.|||
T Consensus 48 ~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~---f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 117 (644)
T PLN02964 48 SAEDFSGIALLTLVGAE----MK---FKDKWLACVSFGEQT---FRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFE 117 (644)
T ss_pred ecccccCeEEEEeehhh----hc---cCCcEEEEEEeccee---eeeccccccCCcccchhhceEeccCCcceEEEEEEe
Confidence 35566899999999997 33 35887655 555443 599999999999999999999987666667999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCC
Q 011813 337 WDKVGGHDRLGMQLVPLKLLTPHE 360 (477)
Q Consensus 337 ~d~~~~d~~lG~~~v~L~~l~~~~ 360 (477)
.+.+++++++|.|+++|.++...+
T Consensus 118 ~~~~s~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 118 TNRLSKNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred cCCCCHHHhhhheeecHhhccHHH
Confidence 999999999999999998876543
|
|
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=97.76 E-value=1.9e-05 Score=69.57 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=31.0
Q ss_pred CCCCCcEEEEEEcCeEeeeeeeeeccCccceecC
Q 011813 444 ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 444 ~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~~ 477 (477)
.+.+||||+|.+++++.||+++++|+||+||++|
T Consensus 32 ~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f 65 (151)
T cd04018 32 KELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQI 65 (151)
T ss_pred CCCcCcEEEEEECCEeeecceEcCCCCCCcceEE
Confidence 4579999999999999999999999999999764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >KOG3532 consensus Predicted protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00013 Score=75.72 Aligned_cols=223 Identities=19% Similarity=0.295 Sum_probs=145.5
Q ss_pred CCCCceeCCCC-------cchHHHHHHHHHHhhh------HHHHHHHHHHHHHHHHHhhcc-CCceeeeEEEeEeeCCCC
Q 011813 61 EIPLWVKNPDY-------ERVDWLNRFLSDMWPY------LDKAICANVRTTAQPIFDEYS-GKFKIESIEFENLTLGTL 126 (477)
Q Consensus 61 ~~p~w~~~~d~-------E~~~WlN~~l~~~Wp~------~~~~~~~~i~~~~~~~l~~~~-p~~~i~~i~~~~~~lG~~ 126 (477)
+.|.|...... -.|-.+|.++..+..- ...++-+.....++.++.... ... ++.+++.++-+|.+
T Consensus 81 ~~~t~~~~~~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~L-L~~~~i~elElg~~ 159 (1051)
T KOG3532|consen 81 ELRTFLKSGEDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRL-LQEIRIRELELGTK 159 (1051)
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhh-hcccceehhhhccc
Confidence 58888766332 3455566777766652 222233333333444444332 343 89999999999999
Q ss_pred CCeEeeEEEEecC------------C-------------CeEEEEeeeeeecCCcEEEEEEEe---eeEEEEEEEEEEEE
Q 011813 127 PPTIYGIRVYETN------------E-------------NQLVMEPALRWAGNPNIVLVLKLL---SFRITVQLVDLQIF 178 (477)
Q Consensus 127 ~P~i~~ir~~~~~------------~-------------~~~~le~~~~~~~~~~i~l~~~~~---~~~~~v~v~~l~~~ 178 (477)
.|.+++.+++.-+ + ..+.+=.++.|.|+..-++.+... +-+++|+ -.+++
T Consensus 160 f~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iK--l~~l~ 237 (1051)
T KOG3532|consen 160 FMTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVK--ITKLT 237 (1051)
T ss_pred cccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEE--EEEec
Confidence 9999999998711 0 123445688999988777777652 2344444 44999
Q ss_pred EEEEEEEeecCCCCCceeEEEEEcCCCceEEEEEE--EeCcccccccchhHHHHHHHHHhhhccccCCceee-------e
Q 011813 179 AAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIK--ILGGDIMSIPGLYQFIQKCITKYVAGIYIWPQTYE-------I 249 (477)
Q Consensus 179 g~~rv~l~pl~~~~P~~~~~~~sf~~~P~id~~~~--~~g~~~~~iP~l~~~i~~~i~~~i~~~~v~P~~~~-------i 249 (477)
|.+|+.+. ..|+ .+++++|.+.|.+..+++ ..|-.+-+ -|...|++.|+..+.+...|||+-. .
T Consensus 238 Gm~r~~~~----r~py-~hw~~sf~G~P~~e~di~s~~qg~qLQ~--~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~ 310 (1051)
T KOG3532|consen 238 GMVRVILS----RQPY-HHWTFSFVGQPIFETDINSQIQGHQLQR--LIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPN 310 (1051)
T ss_pred cceeEEEE----eccc-eeeeeeeccCchhhhhhHHHHHHHHHHH--HhHHHHHHHHHHHHHhhccCcchhhhccccccC
Confidence 99999986 3444 889999999998755544 33322221 2456788888888888899998532 1
Q ss_pred ecCCccc----ccccCCceEEEEEEEEccccccccccCCCCcEEEEEEcC
Q 011813 250 PILDASS----VAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG 295 (477)
Q Consensus 250 ~i~~~~~----~~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~ 295 (477)
|+-.... ..--.+.|.+.|++.++..|.. ..++..-||.+.+.+
T Consensus 311 ~~~~a~~~~~s~~~i~~~G~~~V~~lE~srL~~--~~k~~e~Yct~T~e~ 358 (1051)
T KOG3532|consen 311 PIFQASPPINSFTHIKMEGGIEVTVLECSRLKD--KNKNYEVYCTVTIES 358 (1051)
T ss_pred cccccCcchhhhhheeccCceeEeehhhhhhhc--cCCccceeeeccccC
Confidence 1111111 0123467999999999998865 457888999988854
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.67 E-value=7.2e-05 Score=77.03 Aligned_cols=88 Identities=31% Similarity=0.522 Sum_probs=70.8
Q ss_pred EEEccccccccccCCCCcEEEEEEc--Cc-ccCceeeeeeCCCCCCeeeeEEEEEeecCC----CCeEEEEEEecCCCCC
Q 011813 270 VVRASKLLKKDFLGTSDPYVKLSLT--GE-KLPWKKTTVKKKNLNPEWNENFKLVVKEPE----SQILQLQVFDWDKVGG 342 (477)
Q Consensus 270 v~~A~~L~~~d~~g~~dpyv~v~l~--~~-~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~----~~~L~v~V~d~d~~~~ 342 (477)
..+|++|.++|..+++|||..++-. .+ ....++|.+.++++||.|.+ |.+...... ...+.+.+||++..++
T Consensus 142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence 3568999999999999999988753 22 23457999999999999995 455544322 4678999999999999
Q ss_pred CCeeEEEEEECcccCC
Q 011813 343 HDRLGMQLVPLKLLTP 358 (477)
Q Consensus 343 d~~lG~~~v~L~~l~~ 358 (477)
++++|.+..++.++..
T Consensus 221 ~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 221 HDLIGKFQTTLSELQE 236 (529)
T ss_pred cCceeEecccHHHhcc
Confidence 9999999999988864
|
|
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=97.63 E-value=5.2e-05 Score=82.06 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=28.8
Q ss_pred CCCCcEEEEEEcCeEe-eeeeeeeccCccceecC
Q 011813 445 NHNNPYAIILYKGDKK-RTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 445 ~~~DPyvkv~l~~~~~-kTkv~~~t~~P~~~~~~ 477 (477)
+++||||+|.++++++ ||+++++++||.||+.|
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F 108 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKF 108 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeE
Confidence 3679999999988765 99999999999999654
|
|
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=97.61 E-value=7.2e-05 Score=64.17 Aligned_cols=44 Identities=30% Similarity=0.387 Sum_probs=35.5
Q ss_pred EEEEEeeeecCCC-----CC--CCCcEEEEEEcC---eEeeeeeeeeccC--ccce
Q 011813 431 LSVLVQGAEDVEG-----EN--HNNPYAIILYKG---DKKRTKVSFLSLL--YTYS 474 (477)
Q Consensus 431 L~V~V~~A~~L~~-----~~--~~DPyvkv~l~~---~~~kTkv~~~t~~--P~~~ 474 (477)
|+|+|.+|+|++. .| .+|||||+.+.+ ++++|.|+++|+| |+||
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FN 57 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFN 57 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEe
Confidence 8999999999653 23 599999999975 4569999999988 4444
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00013 Score=60.97 Aligned_cols=100 Identities=26% Similarity=0.324 Sum_probs=71.0
Q ss_pred EEEEEEEccccccccc-------------cCCCCcEEEEEEc--CcccCceeeeeeCCCCCCeeeeEEEEEee-------
Q 011813 266 LHVKVVRASKLLKKDF-------------LGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLVVK------- 323 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~-------------~g~~dpyv~v~l~--~~~~~~~kT~v~~~t~nP~WnE~f~f~v~------- 323 (477)
|.|.|++|.+|+..-. .--.++||++.+. ++. ..++|+++.++..|.||.+++|...
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~-e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEK-ELRRTRTVARSFCPEFNHHVEFPCNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCC-ceeeccchhhhcCCCccceEEEecccEEEcCC
Confidence 4688999999975321 0124899999853 333 3468999999999999999999875
Q ss_pred -c-------CCCCeEEEEEEecCCC----------CCCCeeEEEEEECcccCCCC-ceEEEE
Q 011813 324 -E-------PESQILQLQVFDWDKV----------GGHDRLGMQLVPLKLLTPHE-TKEFTL 366 (477)
Q Consensus 324 -~-------~~~~~L~v~V~d~d~~----------~~d~~lG~~~v~L~~l~~~~-~~~~~~ 366 (477)
+ .+...+.++||+.+.- .+|-.||.+.+|+.+|.... +..-|+
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~ 141 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWY 141 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccc
Confidence 1 1245799999997632 23557999999999986432 333444
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=97.59 E-value=2.7e-05 Score=84.09 Aligned_cols=185 Identities=16% Similarity=0.183 Sum_probs=115.2
Q ss_pred CceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecC---------CCCeEEE
Q 011813 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP---------ESQILQL 332 (477)
Q Consensus 262 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~---------~~~~L~v 332 (477)
..--++++|.+|+.|...|..+.+|||+.+.+.++. ++|.++.+|+||.|+++..|.-.+. .-..+.+
T Consensus 204 ~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs---~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~ 280 (1105)
T KOG1326|consen 204 IHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQS---KETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVF 280 (1105)
T ss_pred hhhhhHHHHHHHHhhcCCCcccCCCchhhhhccccc---ceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEE
Confidence 344578888999999999999999999999988765 4899999999999999988853211 1246889
Q ss_pred EEEecCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEecccC-ccccccccccccc
Q 011813 333 QVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKED-SIKFSSVSKKYSR 411 (477)
Q Consensus 333 ~V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~~-~~~~~~~~~~~~~ 411 (477)
++||.++.+.++++|+......-... .+.-.|.+... ++...|++.++....-.... ..+....
T Consensus 281 e~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~r--------g~~l~gd~l~a~eliq~~~~i~~p~~~~------ 345 (1105)
T KOG1326|consen 281 EVYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTMR--------GAFLDGDVLIAAELIQIGKPIPQPPPQR------ 345 (1105)
T ss_pred EeehhhhhchHHhhcccccceEEEec-CCccceEEeec--------ccccccchhHHHHHHhhcCCCCCCCccc------
Confidence 99999999999999997664332222 33445555543 24455655544322211100 0000000
Q ss_pred CCCCCCCCCCcc--ccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeee
Q 011813 412 KGSGNDQSSDEE--ALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSF 466 (477)
Q Consensus 412 ~~~~~~~~~~~~--~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~ 466 (477)
.....-. |.. .....+.++|-...-+|... .....|-+-+.++++...+-.+.
T Consensus 346 ~~~~~~v--p~~iRp~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~e~v~s~~I~ 403 (1105)
T KOG1326|consen 346 EIIFSLV--PKKIRPKTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGGERVSSFSIF 403 (1105)
T ss_pred ccceecc--ccCCCcceeeeeeehhhhhhcccccccccccCCcceeEeeCCceEeeeeeh
Confidence 0000000 111 11144555555555566654 23578888899999988766655
|
|
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=97.58 E-value=6.5e-05 Score=62.65 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEEcCeE-eeeeeeeeccCccceecC
Q 011813 444 ENHNNPYAIILYKGDK-KRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 444 ~~~~DPyvkv~l~~~~-~kTkv~~~t~~P~~~~~~ 477 (477)
+|.+||||+++++++. .||+++++|.||.||..+
T Consensus 10 ~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f 44 (111)
T cd04052 10 TGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNAST 44 (111)
T ss_pred CCCCCceEEEEECCEEEEEEeeeccCCCCccCCce
Confidence 4679999999998864 599999999999999643
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00011 Score=80.75 Aligned_cols=63 Identities=21% Similarity=0.294 Sum_probs=53.1
Q ss_pred CccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc
Q 011813 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK 456 (477)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~ 456 (477)
++..|+|.|+++|. .|.|+|-|+.||+|+- +..+|||||.|+.
T Consensus 1509 ~~iggqV~LsIsY~----------------------------------~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLl 1554 (1639)
T KOG0905|consen 1509 GEIGGQVKLSISYN----------------------------------NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLL 1554 (1639)
T ss_pred cccCceEEEEEEEc----------------------------------CceEEEEhhhhcccccccCCCCCCcceeEEec
Confidence 45677999999994 5899999999999953 4579999999996
Q ss_pred C-----eEeeeeeeeeccCccceec
Q 011813 457 G-----DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 457 ~-----~~~kTkv~~~t~~P~~~~~ 476 (477)
. .|+|||++++|.+|+||+-
T Consensus 1555 Pdp~k~sKRKTKvvrkt~~PTfnE~ 1579 (1639)
T KOG0905|consen 1555 PDPRKTSKRKTKVVRKTRNPTFNEM 1579 (1639)
T ss_pred CCchHhhhhhhccccccCCCchhhh
Confidence 4 4459999999999999964
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00011 Score=71.88 Aligned_cols=110 Identities=25% Similarity=0.335 Sum_probs=86.3
Q ss_pred CCceEEEEEEEEcccccccccc-CCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEE-e
Q 011813 261 KPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF-D 336 (477)
Q Consensus 261 ~~~G~L~V~v~~A~~L~~~d~~-g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~-d 336 (477)
..+|.|.|.|++|++|..+... ..++|||+|++.+.. ..+.+|+...+|.+|.+.....|.- .+....|.+.|| |
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~-sp~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQ-SPPGKYLQGTVWGD 344 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhcc-CCCccEEEEEEecc
Confidence 4579999999999999876532 368999999997643 3456888889999998877666654 344678999999 4
Q ss_pred cCCCCCCCeeEEEEEECcccCCCC-ceEEEEecccc
Q 011813 337 WDKVGGHDRLGMQLVPLKLLTPHE-TKEFTLDLLKH 371 (477)
Q Consensus 337 ~d~~~~d~~lG~~~v~L~~l~~~~-~~~~~~~l~~~ 371 (477)
+.++.++.|+|.+.+-+.++.... ....|+++...
T Consensus 345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred ccccchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 666777889999999999998776 66788887653
|
|
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00013 Score=64.38 Aligned_cols=34 Identities=12% Similarity=0.009 Sum_probs=29.6
Q ss_pred CCCCCcEEEEEEcCeEeeeeeeee-ccCccceecC
Q 011813 444 ENHNNPYAIILYKGDKKRTKVSFL-SLLYTYSLQL 477 (477)
Q Consensus 444 ~~~~DPyvkv~l~~~~~kTkv~~~-t~~P~~~~~~ 477 (477)
.+.+||||++++++++.||+++.+ |+||.||..|
T Consensus 18 ~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F 52 (150)
T cd04019 18 NRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEEL 52 (150)
T ss_pred CCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcE
Confidence 368999999999999889999976 6999999653
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00033 Score=56.77 Aligned_cols=45 Identities=22% Similarity=0.322 Sum_probs=35.8
Q ss_pred EEEEEeeeecCCC------CCCCCcEEEEEEcCeEe-eeeeeeeccCccceec
Q 011813 431 LSVLVQGAEDVEG------ENHNNPYAIILYKGDKK-RTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 431 L~V~V~~A~~L~~------~~~~DPyvkv~l~~~~~-kTkv~~~t~~P~~~~~ 476 (477)
|+|+|+.|||++. .+.+||||.+++++..+ ||++. +|+.|++.|+
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~s-rnd~WnE~F~ 52 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPS-RNDRWNEDFE 52 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCC-CCCcccceEE
Confidence 6899999999975 46799999999999854 99995 5555555554
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00039 Score=55.28 Aligned_cols=45 Identities=27% Similarity=0.336 Sum_probs=39.6
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcC-eEeeeeeeeeccCcccee
Q 011813 431 LSVLVQGAEDVEG---ENHNNPYAIILYKG-DKKRTKVSFLSLLYTYSL 475 (477)
Q Consensus 431 L~V~V~~A~~L~~---~~~~DPyvkv~l~~-~~~kTkv~~~t~~P~~~~ 475 (477)
|.|.|++|++|+. .+.+||||.+++.+ ...+|++..++.+|.|+.
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~ 49 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNE 49 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccc
Confidence 5789999999976 45799999999998 777999999999999984
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00057 Score=54.64 Aligned_cols=46 Identities=28% Similarity=0.418 Sum_probs=40.0
Q ss_pred EEEEEeeeecCCCC---CCCCcEEEEEEcCe---EeeeeeeeeccCccceec
Q 011813 431 LSVLVQGAEDVEGE---NHNNPYAIILYKGD---KKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 431 L~V~V~~A~~L~~~---~~~DPyvkv~l~~~---~~kTkv~~~t~~P~~~~~ 476 (477)
|.|.|++|++|... +..||||++++.+. ..+|+++.++.+|.||.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~ 53 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNET 53 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccce
Confidence 67999999999874 46999999999875 679999999999999854
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.058 Score=53.73 Aligned_cols=200 Identities=17% Similarity=0.180 Sum_probs=125.4
Q ss_pred EEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeec-------CCCCeEEEEEEecC
Q 011813 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE-------PESQILQLQVFDWD 338 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~-------~~~~~L~v~V~d~d 338 (477)
+.|+|++|+|.+... ...-.+..+++++.. .|..+..+..|.||......+.. .....+++++|..|
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l---~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~ 75 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESL---ETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD 75 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCcee---eecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence 578999999998752 345677888888766 67778899999999888887752 23678999999998
Q ss_pred -CCCCCCeeEEEEEECccc---CCC--CceEEEEecccccCCCCCCCCccceEEEEEEEEEecccCcccccc--cccc-c
Q 011813 339 -KVGGHDRLGMQLVPLKLL---TPH--ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSS--VSKK-Y 409 (477)
Q Consensus 339 -~~~~d~~lG~~~v~L~~l---~~~--~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~~~~~~~~--~~~~-~ 409 (477)
..+..+.+|.+.++|... ..+ .....|++|...... -.+.+-+|.+.+....-......... .... .
T Consensus 76 ~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~----y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p 151 (340)
T PF12416_consen 76 GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSK----YKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAP 151 (340)
T ss_pred CCCCcceeccEEEEEccccccccccccccCCCeeEccccccc----cccCCccEEEEEEEeccccccCCccccccccCCC
Confidence 556788999999999998 444 456688888653111 12345578888776653332110000 0000 0
Q ss_pred ccCC------CCCCC-------C--------CCccccCcceEEEEEEeeeecCCCC---------CCCCcEEEEEEcCeE
Q 011813 410 SRKG------SGNDQ-------S--------SDEEALSGAGLLSVLVQGAEDVEGE---------NHNNPYAIILYKGDK 459 (477)
Q Consensus 410 ~~~~------~~~~~-------~--------~~~~~~~~~g~L~V~V~~A~~L~~~---------~~~DPyvkv~l~~~~ 459 (477)
.+.+ +.... . .|.+.......|.|++-.|+||..- +...-|....+-|..
T Consensus 152 ~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~ 231 (340)
T PF12416_consen 152 PRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGND 231 (340)
T ss_pred cccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcE
Confidence 0000 00000 0 0111122467899999999998531 234556666666666
Q ss_pred eeeeeeeeccCcccee
Q 011813 460 KRTKVSFLSLLYTYSL 475 (477)
Q Consensus 460 ~kTkv~~~t~~P~~~~ 475 (477)
..|.--+...+|++.+
T Consensus 232 Vt~~~F~~l~~~~f~~ 247 (340)
T PF12416_consen 232 VTTEPFKSLSSPSFPP 247 (340)
T ss_pred eEeeeccccCCCCcCe
Confidence 6666666666666543
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0009 Score=66.14 Aligned_cols=127 Identities=20% Similarity=0.182 Sum_probs=93.3
Q ss_pred CCceEEEEEEEEccccccccccCCCCcEEEEEEc--CcccCceeeeeeCCCCCCeeeeEEEEEeecC-----------CC
Q 011813 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLVVKEP-----------ES 327 (477)
Q Consensus 261 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~--~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~-----------~~ 327 (477)
.....|++.|+++.+++........|-|+++.+. ++...+.+|.++++|.+|.|+|.|.+.+..- ..
T Consensus 364 l~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr 443 (523)
T KOG3837|consen 364 LKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKR 443 (523)
T ss_pred cchhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHh
Confidence 3456677788888877654323345778887763 2223345899999999999999999988641 13
Q ss_pred CeEEEEEEecCCC-CCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 328 QILQLQVFDWDKV-GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 328 ~~L~v~V~d~d~~-~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
..+.|++|+...+ ..|.++|.+.+.|..|...-..+..+++... .....|.|.+.++.--
T Consensus 444 ~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG-------RK~vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 444 LGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG-------RKAVGGKLEVKVRIRQ 504 (523)
T ss_pred cCeeEEEeeccccccccceeceeeeeehhhhcccchhhceecccc-------ccccCCeeEEEEEEec
Confidence 4689999998764 5688999999999999887777778887542 2456788888888753
|
|
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.064 Score=47.55 Aligned_cols=90 Identities=24% Similarity=0.237 Sum_probs=61.0
Q ss_pred eEEEEEEEEccccccccccCCCCcEEEEEE--cCcccC-ceeeeeeCCCCCCeeeeEEEEEee--cC-CCCeEEEEEEec
Q 011813 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK--EP-ESQILQLQVFDW 337 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~-~~kT~v~~~t~nP~WnE~f~f~v~--~~-~~~~L~v~V~d~ 337 (477)
..++|+|+++.++.-.+ .+|-||.+.+ +++... ...|+.+. ..++.|||...|.+. +. ....|.|++|+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 46889999999987543 4688888865 433321 12344333 367999999999765 32 367899999997
Q ss_pred CCCC----CCCeeEEEEEECcccC
Q 011813 338 DKVG----GHDRLGMQLVPLKLLT 357 (477)
Q Consensus 338 d~~~----~d~~lG~~~v~L~~l~ 357 (477)
.... ....+|.+.++|-+..
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~~ 107 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDYT 107 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECCC
Confidence 6421 1246999999987643
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.16 Score=44.05 Aligned_cols=123 Identities=20% Similarity=0.249 Sum_probs=79.8
Q ss_pred ceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeee-CCCCCCeeeeEEEEEee---c-----CCCCeEEEE
Q 011813 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVK-KKNLNPEWNENFKLVVK---E-----PESQILQLQ 333 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~-~~t~nP~WnE~f~f~v~---~-----~~~~~L~v~ 333 (477)
.=.+.++|++..+++. ....-||+...+.......+|... ..+-.-.|||.|.+.+. + .....+.|.
T Consensus 6 kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 6 KFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 3457788899988876 223445555555433212233322 34445689999999864 1 124578899
Q ss_pred EEecCCCCCCCeeEEEEEECcccCCC--CceEEEEecccccCCCCCCCCccceEEEEEEEEEeccc
Q 011813 334 VFDWDKVGGHDRLGMQLVPLKLLTPH--ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKE 397 (477)
Q Consensus 334 V~d~d~~~~d~~lG~~~v~L~~l~~~--~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~ 397 (477)
|+....-++...+|.+.++|++.... ......+.+... ......|++++.+.+..+
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--------~~~~a~L~isi~~~~~~~ 139 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--------KKSNATLSISISLSELRE 139 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--------CCCCcEEEEEEEEEECcc
Confidence 99885333336899999999999874 455666666432 355678999999887543
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.077 Score=46.57 Aligned_cols=128 Identities=16% Similarity=0.257 Sum_probs=88.3
Q ss_pred CCceEEEEEEEEccccccccc--cCCCCcEEE--EEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCC----------
Q 011813 261 KPVGILHVKVVRASKLLKKDF--LGTSDPYVK--LSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE---------- 326 (477)
Q Consensus 261 ~~~G~L~V~v~~A~~L~~~d~--~g~~dpyv~--v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~---------- 326 (477)
...-.|+++|..++-....-. .+..+.-.. +.++++++ +|+.+..+.+|.|+|.|-|.+....
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF---~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~l 82 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRF---RSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTL 82 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceE---ecCCcccccCCCCCCcEEEEecccccccccchhHh
Confidence 345678889888875432111 134444444 44566655 8899999999999999999987431
Q ss_pred ---CCeEEEEEEecCCCCCCCeeEEEEEECcccCCCCce--EEEEecccccCCCCCCCCccceEEEEEEEEEec
Q 011813 327 ---SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETK--EFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (477)
Q Consensus 327 ---~~~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~ 395 (477)
.+.+++.|-..|..+...++|.-.++-..+...... ....++..... ......|-|.++++.+|.
T Consensus 83 ls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~----e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 83 LSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGP----ESKVPVGILDLRLELLPN 152 (156)
T ss_pred hcCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCC----CCccceeEEEEEEEeecC
Confidence 457888888888776678999999888877655443 56666643211 124578999999999983
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.016 Score=57.00 Aligned_cols=52 Identities=27% Similarity=0.256 Sum_probs=42.7
Q ss_pred CcceEEEEEEeeeecCCC----CCCCCcEEEEEEcC-----eEeeeeeeeeccCccceecC
Q 011813 426 SGAGLLSVLVQGAEDVEG----ENHNNPYAIILYKG-----DKKRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 426 ~~~g~L~V~V~~A~~L~~----~~~~DPyvkv~l~~-----~~~kTkv~~~t~~P~~~~~~ 477 (477)
.+.|.+.|.|++|++|.. +..++|||||++.. .++||+...+|+.|-|-+||
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l 326 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQL 326 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhh
Confidence 378999999999999964 23799999999864 44499999999999887664
|
|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.026 Score=60.99 Aligned_cols=90 Identities=22% Similarity=0.340 Sum_probs=67.3
Q ss_pred ceEEEEEEEEccccccccccCCCCcEEEEEEcCc----ccCceeeeeeC-CCCCCeeee-EEEEE-eecCCCCeEEEEEE
Q 011813 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE----KLPWKKTTVKK-KNLNPEWNE-NFKLV-VKEPESQILQLQVF 335 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~----~~~~~kT~v~~-~t~nP~WnE-~f~f~-v~~~~~~~L~v~V~ 335 (477)
.+.+.|+|+++.=|..++ ...||.|.+-+- ....++|++.. ++.||+|+| .|.|. |.-++-..|+|.||
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 467899999999987655 458999988432 12345676664 788999995 57775 32334467999999
Q ss_pred ecCCCCCCCeeEEEEEECcccCCCC
Q 011813 336 DWDKVGGHDRLGMQLVPLKLLTPHE 360 (477)
Q Consensus 336 d~d~~~~d~~lG~~~v~L~~l~~~~ 360 (477)
+... .++|+-.+|+..+..+-
T Consensus 778 eEgg----K~ig~RIlpvd~l~~GY 798 (1189)
T KOG1265|consen 778 EEGG----KFIGQRILPVDGLNAGY 798 (1189)
T ss_pred ccCC----ceeeeeccchhcccCcc
Confidence 9852 59999999999998774
|
|
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.086 Score=46.68 Aligned_cols=93 Identities=24% Similarity=0.264 Sum_probs=60.9
Q ss_pred eEEEEEEEEccccccccccCCCCcEEEEEE--cCccc-CceeeeeeCCCCCCeeeeEEEEEee--cC-CCCeEEEEEEec
Q 011813 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKL-PWKKTTVKKKNLNPEWNENFKLVVK--EP-ESQILQLQVFDW 337 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l--~~~~~-~~~kT~v~~~t~nP~WnE~f~f~v~--~~-~~~~L~v~V~d~ 337 (477)
..++|++....++...+ ....+-||.+.+ +++.. ....|.....+.++.|||...|.+. +. ....|.+.+|+.
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 35678888887776421 234567777755 43322 2223433333468999999999864 32 367899999998
Q ss_pred CCCC--CCCeeEEEEEECcccC
Q 011813 338 DKVG--GHDRLGMQLVPLKLLT 357 (477)
Q Consensus 338 d~~~--~d~~lG~~~v~L~~l~ 357 (477)
+..+ .+..||.+.++|-+..
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred ecCCCCcceEEEEEeEEeEccc
Confidence 7544 4678999999987643
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.037 Score=53.16 Aligned_cols=119 Identities=19% Similarity=0.241 Sum_probs=77.6
Q ss_pred ccCCceEEEEEEEEcccccccc--ccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEe
Q 011813 259 IKKPVGILHVKVVRASKLLKKD--FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFD 336 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d--~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d 336 (477)
.....|+|.+++..+++|+... .+-.-+-||++..+.+. ..+|.+.....--.|.|+|+..+.+ ...+.+-||.
T Consensus 46 ~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh--~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvyS 121 (442)
T KOG1452|consen 46 LVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQH--PARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYS 121 (442)
T ss_pred eecccceEEEEEecccccccChhccCceeeeeeeeeecccC--ccccccccCCCCccchhhceeeccc--ceeeeEEEee
Confidence 3456799999999999997543 23456899999987543 3567776666666799999998875 3578999999
Q ss_pred cCCCCCCCeeEEEEEECcccCC-CCceEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 011813 337 WDKVGGHDRLGMQLVPLKLLTP-HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (477)
Q Consensus 337 ~d~~~~d~~lG~~~v~L~~l~~-~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (477)
|+...++++--.-.+.+..+.. +..+..-+. -+++|++.+.+.+.
T Consensus 122 W~pq~RHKLC~~g~l~~~~v~rqspd~~~Al~------------lePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 122 WPPQRRHKLCHLGLLEAFVVDRQSPDRVVALY------------LEPRGQPPLRLPLA 167 (442)
T ss_pred cCchhhccccccchhhhhhhhhcCCcceeeee------------cccCCCCceecccC
Confidence 9877666652222222222221 122222222 34678887777665
|
|
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.1 Score=47.07 Aligned_cols=91 Identities=18% Similarity=0.210 Sum_probs=60.4
Q ss_pred eEEEEEEEEccccccccccCCCCcEEEEEE--cCcccC-ceeeeeeCCCCCCeeeeEEEEEee--cC-CCCeEEEEEEec
Q 011813 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK--EP-ESQILQLQVFDW 337 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~-~~kT~v~~~t~nP~WnE~f~f~v~--~~-~~~~L~v~V~d~ 337 (477)
..++|+|+.+.++...+ ...+-||.+.+ |++... ...|+....+.++.|||.+.|.+. +. ....|.|.+|+.
T Consensus 8 ~~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 35889999999998622 34667777644 444331 234555444567999999999764 32 367899999997
Q ss_pred CCCC----------------CCCeeEEEEEECccc
Q 011813 338 DKVG----------------GHDRLGMQLVPLKLL 356 (477)
Q Consensus 338 d~~~----------------~d~~lG~~~v~L~~l 356 (477)
.... .+..||.+.++|-+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 5322 135778887777553
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.057 Score=56.58 Aligned_cols=50 Identities=16% Similarity=0.049 Sum_probs=39.0
Q ss_pred cceEEEEEEeeeecCCC--------CCCCCcEEEEEEcC-----eEeeeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEG--------ENHNNPYAIILYKG-----DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~--------~~~~DPyvkv~l~~-----~~~kTkv~~~t~~P~~~~~ 476 (477)
....|+|.|+.|++++. ...+||||+|.+.| .++||++..+..||.||.+
T Consensus 407 ~~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~ 469 (537)
T PLN02223 407 VVKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEE 469 (537)
T ss_pred cceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecce
Confidence 45789999999998741 13589999999865 3457877778899999954
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.052 Score=57.96 Aligned_cols=50 Identities=18% Similarity=0.091 Sum_probs=39.7
Q ss_pred cceEEEEEEeeeecCCC--C-------CCCCcEEEEEEcC-----eEeeeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEG--E-------NHNNPYAIILYKG-----DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~--~-------~~~DPyvkv~l~~-----~~~kTkv~~~t~~P~~~~~ 476 (477)
....|+|.|+.|++|+. . ..+||||+|.+-| .++||+++.+|.||.||.+
T Consensus 468 ~~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~ 531 (599)
T PLN02952 468 VKKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEE 531 (599)
T ss_pred ccceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCe
Confidence 35689999999998752 1 2359999999854 5569999999999999954
|
|
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.18 Score=45.42 Aligned_cols=93 Identities=23% Similarity=0.252 Sum_probs=62.7
Q ss_pred eEEEEEEEEccccccccccCCCCcEEEEEE--cCcccCc-eeeeeeC----CCCCCeeeeEEEEEee--c-CCCCeEEEE
Q 011813 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPW-KKTTVKK----KNLNPEWNENFKLVVK--E-PESQILQLQ 333 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~~-~kT~v~~----~t~nP~WnE~f~f~v~--~-~~~~~L~v~ 333 (477)
..+.|+|.++.+++........|-|+.+.+ +++.... ..|+... -...+.|||...|.+. + +....|.|.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 467899999999987664456788888865 4333211 2333211 1235779999999875 2 236689999
Q ss_pred EEecCCCC---------CCCeeEEEEEECccc
Q 011813 334 VFDWDKVG---------GHDRLGMQLVPLKLL 356 (477)
Q Consensus 334 V~d~d~~~---------~d~~lG~~~v~L~~l 356 (477)
+|+....+ .+..||.+.++|-+.
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 99986543 346899999888664
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.18 Score=44.85 Aligned_cols=74 Identities=23% Similarity=0.294 Sum_probs=52.1
Q ss_pred CCCCcEEEEEE--cCcccC-ceeeeeeCCCCCCeeeeEEEEEee--cC-CCCeEEEEEEecCCCCCCCeeEEEEEECccc
Q 011813 283 GTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK--EP-ESQILQLQVFDWDKVGGHDRLGMQLVPLKLL 356 (477)
Q Consensus 283 g~~dpyv~v~l--~~~~~~-~~kT~v~~~t~nP~WnE~f~f~v~--~~-~~~~L~v~V~d~d~~~~d~~lG~~~v~L~~l 356 (477)
..+|-||.+.+ ++.... ..+|+.+.-+..+.|||...|++. +. .+..|.|+|||.+..++...+|.+.++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 45778888766 332221 124555555667889999999875 32 3678999999998655677899999988664
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.58 Score=36.96 Aligned_cols=86 Identities=27% Similarity=0.381 Sum_probs=59.4
Q ss_pred CCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCeeEEEEEECcccCCCCce
Q 011813 283 GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETK 362 (477)
Q Consensus 283 g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~~~~ 362 (477)
|.++-.+.+.+++... .+|.-.. -.+..|++.|.+.+.. +..|+|.||-+|. ..+-|...+-|++...
T Consensus 7 ~~~eV~avLklDn~~V--gqT~Wk~-~s~q~WDQ~Fti~LdR--sRELEI~VywrD~---RslCav~~lrLEd~~~---- 74 (98)
T cd08687 7 GCSEVSAVLKLDNTVV--GQTQWKP-KSNQAWDQSFTLELER--SRELEIAVYWRDW---RSLCAVKFLKLEDERH---- 74 (98)
T ss_pred cccceEEEEEEcCeEE--eeccccc-cccccccceeEEEeec--ccEEEEEEEEecc---hhhhhheeeEhhhhcc----
Confidence 3467888888886543 3565533 3477899999999974 5789999998874 3466777777777322
Q ss_pred EEEEecccccCCCCCCCCccceEEEEEEEE
Q 011813 363 EFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (477)
Q Consensus 363 ~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (477)
...++ -.+.|.+..+++|
T Consensus 75 ~~~~~------------lepqg~l~~ev~f 92 (98)
T cd08687 75 EVQLD------------MEPQLCLVAELTF 92 (98)
T ss_pred cceec------------cccccEEEEEEEe
Confidence 22222 3467888888887
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.41 Score=43.24 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=45.5
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEE--cCcccCceeeeeeCCCCCCeeeeEEEEEee--cC-CCCeEEEEEEecC
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLVVK--EP-ESQILQLQVFDWD 338 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~--~~-~~~~L~v~V~d~d 338 (477)
.++|+|.++..+. .+......-||++.+ +++.....+|+...-+.++.|||...|.+. +. ....|.|.||+..
T Consensus 11 ~friki~~~~~~~-~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIPV-LPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeecccC-cCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 4677888876432 222222345666543 433332335666666778999999888865 32 3678999999974
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.13 Score=54.76 Aligned_cols=50 Identities=16% Similarity=-0.010 Sum_probs=38.9
Q ss_pred cceEEEEEEeeeecCC----C-----CCCCCcEEEEEEcC-----eEeeeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVE----G-----ENHNNPYAIILYKG-----DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~----~-----~~~~DPyvkv~l~~-----~~~kTkv~~~t~~P~~~~~ 476 (477)
....|.|.|+.|++++ . ....||||+|.+-| .++||+++.+|.||.||..
T Consensus 450 ~~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~ 513 (581)
T PLN02222 450 VKTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEV 513 (581)
T ss_pred ccceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCe
Confidence 3568999999998753 1 13579999999853 4569999999999999943
|
|
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.46 Score=41.31 Aligned_cols=69 Identities=25% Similarity=0.360 Sum_probs=46.1
Q ss_pred EEEEEE--cCcccC--ceeeeeeCCC-CCCeeeeEEEEEee--c-CCCCeEEEEEEecCCCCCC----CeeEEEEEECcc
Q 011813 288 YVKLSL--TGEKLP--WKKTTVKKKN-LNPEWNENFKLVVK--E-PESQILQLQVFDWDKVGGH----DRLGMQLVPLKL 355 (477)
Q Consensus 288 yv~v~l--~~~~~~--~~kT~v~~~t-~nP~WnE~f~f~v~--~-~~~~~L~v~V~d~d~~~~d----~~lG~~~v~L~~ 355 (477)
||.+.+ |++... .+.|+....+ .++.|||...|.+. + +....|.|.||+.+....+ ..||.+.++|-+
T Consensus 5 ~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd 84 (142)
T PF00792_consen 5 YVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFD 84 (142)
T ss_dssp EEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-
T ss_pred EEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeEC
Confidence 444433 544433 2356655555 79999999999875 3 3367899999998765554 689999999877
Q ss_pred c
Q 011813 356 L 356 (477)
Q Consensus 356 l 356 (477)
.
T Consensus 85 ~ 85 (142)
T PF00792_consen 85 Y 85 (142)
T ss_dssp T
T ss_pred C
Confidence 5
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain | Back alignment and domain information |
|---|
Probab=93.19 E-value=1.5 Score=39.30 Aligned_cols=72 Identities=17% Similarity=0.298 Sum_probs=53.4
Q ss_pred CCCCcEEEEEEcCcccCceeeeeeC--CCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCeeEEEEEECcccCC
Q 011813 283 GTSDPYVKLSLTGEKLPWKKTTVKK--KNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTP 358 (477)
Q Consensus 283 g~~dpyv~v~l~~~~~~~~kT~v~~--~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~ 358 (477)
.+..-|+++.++++.. .+|+... ....=.|||.|.+.+... -+.|.++||.... ..+..|+++.+|+-....
T Consensus 35 ~~~~~~ikl~~N~k~V--~~T~~~~l~~dF~v~f~~~f~v~i~~~-Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 35 QKTRYYIKLFFNDKEV--SRTRSRPLWSDFRVHFNEIFNVQITRW-PESIKLEIYEKSG-LSDRLLAEVFVPVPGSTV 108 (168)
T ss_pred hheeEEEEEEECCEEE--EeeeeEecCCCeEEeccCEEEEEEecC-CCEEEEEEEEccC-ccceEEEEEEeeCCCCcc
Confidence 3456899999987655 3554433 333346789999999874 4689999999986 678899999999865543
|
|
| >cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins | Back alignment and domain information |
|---|
Probab=93.04 E-value=1.1 Score=40.91 Aligned_cols=57 Identities=23% Similarity=0.341 Sum_probs=42.7
Q ss_pred CceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEEEecCCCCC--CCeeEEEEEECcc
Q 011813 299 PWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKVGG--HDRLGMQLVPLKL 355 (477)
Q Consensus 299 ~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V~d~d~~~~--d~~lG~~~v~L~~ 355 (477)
...+|.+...+.+|.|||++.+.++.. ....|.|+.++...-.+ ...+|.+-+||-+
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 346888999999999999999998743 35678898887643221 2578999998843
|
Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int |
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.14 Score=54.82 Aligned_cols=50 Identities=12% Similarity=0.053 Sum_probs=39.3
Q ss_pred cceEEEEEEeeeecCCC--C-------CCCCcEEEEEEcC-----eEeeeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEG--E-------NHNNPYAIILYKG-----DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~--~-------~~~DPyvkv~l~~-----~~~kTkv~~~t~~P~~~~~ 476 (477)
....|.|.|+.+++++. . ..+||||+|.+-| .++||++..++.||.||.+
T Consensus 467 ~~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wnee 530 (598)
T PLN02230 467 PKKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKE 530 (598)
T ss_pred cCcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCe
Confidence 35679999999998742 1 2479999999854 3458999889999999965
|
|
| >cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins | Back alignment and domain information |
|---|
Probab=91.11 E-value=2.4 Score=38.73 Aligned_cols=56 Identities=18% Similarity=0.259 Sum_probs=42.4
Q ss_pred CceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEEEecCCC-CCC---CeeEEEEEECc
Q 011813 299 PWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKV-GGH---DRLGMQLVPLK 354 (477)
Q Consensus 299 ~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V~d~d~~-~~d---~~lG~~~v~L~ 354 (477)
...+|.+...+.+|.|+|++.+.++.. ....|.|++++.... .+| ..+|.+-+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 346888888999999999999988732 366799999886522 122 57899999985
|
Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=90.22 E-value=3.4 Score=37.57 Aligned_cols=56 Identities=18% Similarity=0.264 Sum_probs=34.5
Q ss_pred ceeeeeeCCCCCCeeeeEEEEEeecCC--CCeEEEEEEecCCCCC-C--CeeEEEEEECcc
Q 011813 300 WKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQVFDWDKVGG-H--DRLGMQLVPLKL 355 (477)
Q Consensus 300 ~~kT~v~~~t~nP~WnE~f~f~v~~~~--~~~L~v~V~d~d~~~~-d--~~lG~~~v~L~~ 355 (477)
...|.+..++.+|.|+|+|.+.++... ...|.|++++...-.+ + ..+|.+.+||-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 457888888999999999999987433 5679999999764322 2 689999999988
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=89.89 E-value=0.45 Score=50.69 Aligned_cols=47 Identities=15% Similarity=0.066 Sum_probs=36.7
Q ss_pred ceEEEEEEeeeecCCC---C------CCCCcEEEEEEcC-----eEeeeeeeeeccCccc-e
Q 011813 428 AGLLSVLVQGAEDVEG---E------NHNNPYAIILYKG-----DKKRTKVSFLSLLYTY-S 474 (477)
Q Consensus 428 ~g~L~V~V~~A~~L~~---~------~~~DPyvkv~l~~-----~~~kTkv~~~t~~P~~-~ 474 (477)
...|+|.|++|++|+. . ...||||+|.+-+ .+.||++++++.||.| +
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~ 491 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGN 491 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECC
Confidence 4589999999998731 1 2389999999854 3349999988899999 5
|
|
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=88.90 E-value=2.3 Score=34.48 Aligned_cols=73 Identities=21% Similarity=0.265 Sum_probs=46.0
Q ss_pred EEEEEEEccccccccccCCCCcEEEEEE--cCcccC-ceeeeeeCCCCCCeeeeEEEEEee--c-CCCCeEEEEEEecC
Q 011813 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDWD 338 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~-~~kT~v~~~t~nP~WnE~f~f~v~--~-~~~~~L~v~V~d~d 338 (477)
+.+.+..+.+..-......++-||.+.+ +++... ...|+.+.-...+.|||...|.+. + +....|.+.+|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 4566666666654433233578888865 433321 224555444556899999998764 3 23678999999865
|
Outlier of C2 family. |
| >cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins | Back alignment and domain information |
|---|
Probab=84.90 E-value=10 Score=34.16 Aligned_cols=54 Identities=17% Similarity=0.276 Sum_probs=39.9
Q ss_pred eeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEEEecCCC-----CCCCeeEEEEEECcc
Q 011813 301 KKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKV-----GGHDRLGMQLVPLKL 355 (477)
Q Consensus 301 ~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V~d~d~~-----~~d~~lG~~~v~L~~ 355 (477)
.+|.+..+ .+|.|+|++.+.++.. ....|.|++|+.+.- .....+|-+.+||-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 34444444 8999999999998743 366899999997632 235679999998876
|
Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo |
| >cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins | Back alignment and domain information |
|---|
Probab=84.36 E-value=21 Score=32.44 Aligned_cols=106 Identities=15% Similarity=0.215 Sum_probs=62.1
Q ss_pred ccccCCceeeeecCCcccccccCCceE-EEEEEEEccccccccccCCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeee
Q 011813 239 GIYIWPQTYEIPILDASSVAIKKPVGI-LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWN 315 (477)
Q Consensus 239 ~~~v~P~~~~i~i~~~~~~~~~~~~G~-L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~Wn 315 (477)
..+|.|..+.+.-.. .+..++++ ++|.+.+..+-. ..|.-.++.+... .....|.|..++.+|.|+
T Consensus 4 ~LYVYP~~l~~~~~k----~~~kaRNI~V~V~lrd~D~~~-------~~~l~~I~~g~g~~~~~~~~s~V~yh~k~P~f~ 72 (185)
T cd08697 4 HLYVYPLHLKYDSQK----TFAKARNIAVCIEFRDSDEED-------AKPLKCIYYGPGGGFTTSAYAAVLHHNQNPEFY 72 (185)
T ss_pred eEEEcccEEEecccc----cccccccEEEEEEEEeCCCCc-------CccceEEecCCCCCcceEEEEEEEEcCCCCccc
Confidence 457888877654211 12223333 556665554311 1222222222221 234578888889999999
Q ss_pred eEEEEEeecC--CCCeEEEEEEecCCC--C-------CCCeeEEEEEECcc
Q 011813 316 ENFKLVVKEP--ESQILQLQVFDWDKV--G-------GHDRLGMQLVPLKL 355 (477)
Q Consensus 316 E~f~f~v~~~--~~~~L~v~V~d~d~~--~-------~d~~lG~~~v~L~~ 355 (477)
|++.+.++-. ....|.|+.|+.+.. . ....+|-+.+||-.
T Consensus 73 dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 73 DEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 9999988733 356799999987521 1 12457888888755
|
Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande |
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=82.16 E-value=1.3 Score=48.85 Aligned_cols=33 Identities=15% Similarity=0.027 Sum_probs=28.0
Q ss_pred CCCCCcEEEEEEcCeEe-eeeeeeecc-Cccceec
Q 011813 444 ENHNNPYAIILYKGDKK-RTKVSFLSL-LYTYSLQ 476 (477)
Q Consensus 444 ~~~~DPyvkv~l~~~~~-kTkv~~~t~-~P~~~~~ 476 (477)
++.+||||.|.+++.+. ||+++.+.+ ||.|++.
T Consensus 44 ~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~ 78 (808)
T PLN02270 44 KGESQLYATIDLEKARVGRTRKIENEPKNPRWYES 78 (808)
T ss_pred CCCCCceEEEEeCCcEEEEEeecCCCCCCCccccc
Confidence 35899999999999888 999998754 8988854
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.86 E-value=2.4 Score=46.18 Aligned_cols=48 Identities=25% Similarity=0.178 Sum_probs=36.0
Q ss_pred cceEEEEEEeeeecCCCC--CCCCcEEEEEEcC-----eEeeee-eeeeccCccce
Q 011813 427 GAGLLSVLVQGAEDVEGE--NHNNPYAIILYKG-----DKKRTK-VSFLSLLYTYS 474 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~~--~~~DPyvkv~l~~-----~~~kTk-v~~~t~~P~~~ 474 (477)
..=.|.|.|+.||.|+.+ +-.-|||+|.+-| .+++|+ +..+-+||.||
T Consensus 1063 ~p~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn 1118 (1267)
T KOG1264|consen 1063 LPMTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWN 1118 (1267)
T ss_pred cceEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCC
Confidence 345789999999999963 4566999998733 444544 45588999999
|
|
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=81.17 E-value=1.6 Score=47.27 Aligned_cols=46 Identities=15% Similarity=0.144 Sum_probs=38.3
Q ss_pred CcceEEEEEEeeeecCCCCCCCCcEEEE-EEcCeEeeeeeeeeccCcccee
Q 011813 426 SGAGLLSVLVQGAEDVEGENHNNPYAII-LYKGDKKRTKVSFLSLLYTYSL 475 (477)
Q Consensus 426 ~~~g~L~V~V~~A~~L~~~~~~DPyvkv-~l~~~~~kTkv~~~t~~P~~~~ 475 (477)
.-+|++.++|.+|+ . +..|||+.+ ++|-+..||.+.++|.+|+||.
T Consensus 51 ~~~~~~~~~~~~~~-~---~~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~ 97 (644)
T PLN02964 51 DFSGIALLTLVGAE-M---KFKDKWLACVSFGEQTFRTETSDSTDKPVWNS 97 (644)
T ss_pred cccCeEEEEeehhh-h---ccCCcEEEEEEecceeeeeccccccCCcccch
Confidence 36899999999998 2 346998776 5677777999999999999995
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 477 | ||||
| 2nsq_A | 155 | Crystal Structure Of The C2 Domain Of The Human E3 | 2e-07 | ||
| 2d8k_A | 141 | Solution Structure Of The First C2 Domain Of Synapt | 8e-07 | ||
| 3b7y_A | 153 | Crystal Structure Of The C2 Domain Of The E3 Ubiqui | 2e-06 | ||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 4e-06 | ||
| 1wfj_A | 136 | C2 Domain-Containing Protein From Putative Elicitor | 6e-06 | ||
| 3m7f_B | 176 | Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX | 3e-05 | ||
| 2r83_A | 284 | Crystal Structure Analysis Of Human Synaptotagmin 1 | 4e-05 | ||
| 3gpe_A | 137 | Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain | 4e-04 | ||
| 1dsy_A | 139 | C2 Domain From Protein Kinase C (Alpha) Complexed W | 4e-04 | ||
| 3hn8_A | 296 | Crystal Structure Of Synaptotagmin Length = 296 | 7e-04 | ||
| 1dqv_A | 296 | Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt | 7e-04 |
| >pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155 | Back alignment and structure |
|
| >pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141 | Back alignment and structure |
|
| >pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153 | Back alignment and structure |
|
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136 | Back alignment and structure |
|
| >pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176 | Back alignment and structure |
|
| >pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284 | Back alignment and structure |
|
| >pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137 | Back alignment and structure |
|
| >pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139 | Back alignment and structure |
|
| >pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296 | Back alignment and structure |
|
| >pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 2e-42
Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 5/170 (2%)
Query: 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWK---KTTVKKKNLNPEWNE 316
++ VKV+ L KKD LG SDPYV+++L +T KK+LNP+WNE
Sbjct: 4 NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNE 63
Query: 317 NFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISD 376
V P+ + +VFD +++ D LG VPL L + K +
Sbjct: 64 EILFRVL-PQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHP 122
Query: 377 P-KDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEAL 425
+ +G + +++TY+P + + +++ DQ L
Sbjct: 123 RSHKSRVKGYLRLKMTYLPKNGSEDENADQAEELEPGWVVLDQPDAATHL 172
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 9e-42
Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 10/144 (6%)
Query: 256 SVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWN 315
S P G L V +V A L DFL DPYV+L+ + K + PEWN
Sbjct: 2 SSGSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQ--KSNVAEGMGTTPEWN 59
Query: 316 ENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNIS 375
E F V E ++ L+ ++FD D D +G +PL+ + + T +
Sbjct: 60 ETFIFTVSEGTTE-LKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNV------ 112
Query: 376 DPKDMKQRGKIVVELTYVPFKEDS 399
KD + +G+I V L++ P S
Sbjct: 113 -VKDEEYKGEIWVALSFKPSGPSS 135
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 1e-41
Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 10/143 (6%)
Query: 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFK 319
G+L V V A + K G DP V + EK KKT LNP WNE +
Sbjct: 3 SGSSGMLRVIVESA-SNIPKTKFGKPDPIVSVIFKDEK---KKTKKVDNELNPVWNEILE 58
Query: 320 LVVKEPE---SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISD 376
++ S L + V D++ +G + +G V LK LT +++ L+ + +
Sbjct: 59 FDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLIS---LLN 115
Query: 377 PKDMKQRGKIVVELTYVPFKEDS 399
K I + + Y P S
Sbjct: 116 EKGQDTGATIDLVIGYDPPSGPS 138
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 3e-41
Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 5/139 (3%)
Query: 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW---KKTTVKKKNLNPEWNE 316
++ I+ V+V+ L KKD LG SDPYV+++L +T KK+LNP+WNE
Sbjct: 16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNE 75
Query: 317 NFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISD 376
V P+ L +VFD +++ D LG VPL L + K +
Sbjct: 76 EILFRVH-PQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHP 134
Query: 377 P-KDMKQRGKIVVELTYVP 394
+ +G + +++TY+P
Sbjct: 135 RSHKSRVKGYLRLKMTYLP 153
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 2e-40
Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 11/140 (7%)
Query: 254 ASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPE 313
+ S K VGIL VKV++A+ LL DF G SDP+ L L ++L +T KNLNPE
Sbjct: 3 SGSSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRL---QTHTVYKNLNPE 59
Query: 314 WNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTN 373
WN+ F +K+ +L++ VFD D D LG +PL + + + L
Sbjct: 60 WNKVFTFPIKDIH-DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDL-- 116
Query: 374 ISDPKDMKQRGKIVVELTYV 393
+ +G I +E+ +
Sbjct: 117 -----EQAFKGVIYLEMDLI 131
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 2e-35
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 14/129 (10%)
Query: 266 LHVKVVRASKLLK---KDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
V V+RA+K+ K D L T DPYV+L ++ K+T ++NP WNE F+ ++
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 323 KEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQ 382
+ +L++ + D + + LG + + E KE +
Sbjct: 65 DPNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIFNQ----------VT 113
Query: 383 RGKIVVELT 391
+ + L
Sbjct: 114 EMVLEMSLE 122
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 4e-34
Identities = 38/156 (24%), Positives = 59/156 (37%), Gaps = 22/156 (14%)
Query: 248 EIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK 307
E + + K + + VV A L KD G+SDPYV + + K K+T
Sbjct: 1 EFAVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTK---KRTKTIY 57
Query: 308 KNLNPEWNENFKLVVKEPESQILQLQVFDWD-----------KVGGHDRLGMQLVPLKLL 356
NLNP W ENF S ++++V D D K D LG ++ ++ L
Sbjct: 58 GNLNPVWEENFHFECHNS-SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL 116
Query: 357 TPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392
+ + LD G I + ++
Sbjct: 117 SGEMDVWYNLD-------KRTDKSAVSGAIRLHISV 145
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 9e-34
Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFK---L 320
L VK+++A +L KDF GTSDP+VK+ L +K +T VK+KNLNP WNE F
Sbjct: 26 STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGF 85
Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNIS 375
++ +IL LQV D+D+ +D +G +PL + + + F DL S
Sbjct: 86 PYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSGPSS 140
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 3e-33
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 10/131 (7%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
+ + V+ A L KKDF DP+ K+ + G T K L+P+WN+++ L V
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQC-HSTDTVKNTLDPKWNQHYDLYV--G 63
Query: 326 ESQILQLQVFDWDKVGGHDR---LGMQLVPLKLLTPH-ETKEFTLDLLKHTNISDPKDMK 381
++ + + V++ K+ LG + ++ +T LDL K +
Sbjct: 64 KTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKL---NPSDTDA 120
Query: 382 QRGKIVVELTY 392
RG+IVV L
Sbjct: 121 VRGQIVVSLQT 131
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 2e-32
Identities = 56/211 (26%), Positives = 92/211 (43%), Gaps = 46/211 (21%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNE--NFKLV 321
L V +++A++L D GTSDPYVK+ L +K +T V +K LNP +NE FK+
Sbjct: 19 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 78
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMK 381
E + L + V+D+D+ HD +G VP+ + E DL + ++ +
Sbjct: 79 YSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA----EKEEQE 134
Query: 382 QRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAED- 440
+ G I L YVP AG L+V++ A++
Sbjct: 135 KLGDICFSLRYVP--------------------------------TAGKLTVVILEAKNL 162
Query: 441 --VEGENHNNPYA-IILYKGD----KKRTKV 464
++ ++PY I L + KK+T +
Sbjct: 163 KKMDVGGLSDPYVKIHLMQNGKRLKKKKTTI 193
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 88.7 bits (220), Expect = 6e-20
Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 4/94 (4%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNE--NFK 319
G L V ++ A L K D G SDPYVK+ L G++L KKTT+KK LNP +NE +F+
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 209
Query: 320 LVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPL 353
+ ++ + + + V D+DK+G +D +G V
Sbjct: 210 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGY 243
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 4e-32
Identities = 26/141 (18%), Positives = 48/141 (34%), Gaps = 15/141 (10%)
Query: 255 SSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEW 314
S+ L + V+ A K PYV++++ G+ KKT +P+W
Sbjct: 27 GSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQS---KKTEKCNNTNSPKW 83
Query: 315 NENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH-----ETKEFTLDLL 369
+ ++V L +V+ + LG + + E TL L
Sbjct: 84 KQPLTVIVT--PVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLG 141
Query: 370 KHTNISDPKDMKQRGKIVVEL 390
D + + G + + L
Sbjct: 142 -----GDKEPTETIGDLSICL 157
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 9e-31
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFK-- 319
L ++RA L D G +DPYVKL L K +T + NP WNE +
Sbjct: 29 SNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYH 88
Query: 320 -LVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370
+ ++ + + L++ V D DK G ++ +G LK L ++ K F + L +
Sbjct: 89 GITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER 140
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 1e-30
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
L V +++A++L D GTSDPYVK+ L +K +T V +K LNP +NE F V
Sbjct: 34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93
Query: 324 EPE--SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369
E + L + V+D+D+ HD +G VP+ + E DL
Sbjct: 94 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 2e-29
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
L V +++A++L D GTSDPYVK+ L +K +T V +K LNP +NE F V
Sbjct: 42 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 101
Query: 324 EPE--SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369
E + L + V+D+D+ HD +G VP+ + E DL
Sbjct: 102 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-28
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW--KKTTVKKKNLNPEWNENFKLV 321
+L V V A L+ D G SDPYVKL L + +KT K +LNPEWNE F+
Sbjct: 31 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 90
Query: 322 VKEPE-SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKH 371
+KE + + L ++++DWD +D +G + L + LL
Sbjct: 91 LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGW-FKLLSQ 140
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 2e-28
Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 4/127 (3%)
Query: 260 KKPVGILHVKVVRASKLLKK---DFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNE 316
+ V V+RA+K+ K D L T DPYV+L ++ K+T ++NP WNE
Sbjct: 14 HQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNE 73
Query: 317 NFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISD 376
F+ ++ + +L++ + D + V + LG + + E KE + T +
Sbjct: 74 TFEFILDPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVL 132
Query: 377 PKDMKQR 383
++
Sbjct: 133 EMSLEVC 139
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 1e-27
Identities = 50/213 (23%), Positives = 87/213 (40%), Gaps = 49/213 (23%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
L V++++A L KD G SDPYVK+ L ++ +T V +K LNP +NE F+ V
Sbjct: 20 DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVP 79
Query: 324 --EPESQILQLQVFDWDKVGGHDRLGMQLVP--LKLLTPHETKEFTLDLLKHTNISDPKD 379
E + L V+D+D+ HD +G ++ L+L + D+L+ +
Sbjct: 80 LAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGG-----SE 134
Query: 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAE 439
G++ L Y+P AGLL+V + A
Sbjct: 135 KADLGELNFSLCYLPT--------------------------------AGLLTVTIIKAS 162
Query: 440 DVEGENHN---NPYAIILYKGD-----KKRTKV 464
+++ + +PY + K++T +
Sbjct: 163 NLKAMDLTGFSDPYVKASLISEGRRLKKRKTSI 195
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 92.2 bits (229), Expect = 5e-21
Identities = 39/112 (34%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNE--NFK 319
G+L V +++AS L D G SDPYVK SL G +L +KT++KK LNP +NE F
Sbjct: 152 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 211
Query: 320 LVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKH 371
+ + E+ L + V D+D +G ++ +G+ V + PH + + ++L +
Sbjct: 212 VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWA-EMLAN 262
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 1e-26
Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 22/157 (14%)
Query: 245 QTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDF----------LGTSDPYVKLSLT 294
+ + + S K G L V++ A L + DPY+ +S+
Sbjct: 10 HSSGLVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVD 69
Query: 295 GEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLK 354
++ +T+ K+K P +NE F V + L+L VF +G + + +
Sbjct: 70 QVRV--GQTSTKQKTNKPTYNEEFCANV--TDGGHLELAVFHETPLGYDHFVANCTLQFQ 125
Query: 355 LLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELT 391
L T + D++ GK+ V +T
Sbjct: 126 ELLRTTGASDTFEGW--------VDLEPEGKVFVVIT 154
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 98.4 bits (245), Expect = 1e-24
Identities = 27/143 (18%), Positives = 55/143 (38%), Gaps = 25/143 (17%)
Query: 261 KPVGILHVKVVRASKLLKKDF-----------LGTSDPYVKLSLTGEKLPWKKTTVKKKN 309
G+L +K+ A L + DPY+ L++ ++ +T K+K
Sbjct: 3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRI--GQTATKQKT 60
Query: 310 LNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369
+P W++ F V ++L VF +G D + + + L + ++ F +
Sbjct: 61 NSPAWHDEFVTDVCNGRK--IELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWI- 117
Query: 370 KHTNISDPKDMKQRGKIVVELTY 392
D++ GK+ V +
Sbjct: 118 ---------DLEPEGKVYVIIDL 131
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 1e-24
Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 5/113 (4%)
Query: 264 GILHVKVVRASKLLKKDFLG-TSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
V + A L D TSDPY+K+++ EK KT V +K L+P ++E F
Sbjct: 22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81
Query: 323 KEPE---SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTP-HETKEFTLDLLKH 371
L + +D+ D +G L+PL + +++
Sbjct: 82 IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 6e-24
Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 6/112 (5%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWK-KTTVKKKNLNPEWNENFKLVV 322
L V + A + G D YV+ S+ + +T +KK+ L+ W E L +
Sbjct: 26 AELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPL 82
Query: 323 KEPE--SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHT 372
E E + L L + D+ H G + L + +L
Sbjct: 83 AEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG 134
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 8e-24
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW-----------KKTTVKKKNLNP 312
G L + +++A L+ +D G SDP+VK+ L + ++T +K+LNP
Sbjct: 18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77
Query: 313 EWNENFKLVVKEPE---SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369
EWN+ E + L++ V+D+D+ +D LG L+ L + + L
Sbjct: 78 EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLK 137
Query: 370 KHT 372
+ T
Sbjct: 138 EQT 140
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 6e-23
Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 5/114 (4%)
Query: 264 GILHVKVVRASKLLKKDFL-GTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKL 320
L V V +L D S+PYVK L + +KT++K+ +NP ++E +
Sbjct: 23 QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRY 82
Query: 321 VVKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHT 372
+ E + LQ V+ + G + LG + + + + L L
Sbjct: 83 EIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKI 136
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 2e-22
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 9/114 (7%)
Query: 264 GILHVKVVRASKL-------LKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNE 316
L V+V+ A L + + S+PYVK+ L ++ K+T VK+K P + E
Sbjct: 26 NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEE 85
Query: 317 NFKLVVKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368
+ + E + L L V D+DK H +G VPL + + + L
Sbjct: 86 RYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKAL 139
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 3e-22
Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 5/140 (3%)
Query: 242 IWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDF-LGTSDPYVKLSLT--GEKL 298
+ QT P + + ++ G L V+V+RA L +K T PYVK+ L G +
Sbjct: 8 VGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACI 67
Query: 299 PWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF-DWDKVGGHDRLGMQLVPLKLLT 357
KKT + +K L+P + ++ P+ ++LQ+ V+ D+ ++ +G+ + L+ L
Sbjct: 68 AKKKTRIARKTLDPLYQQSLVFDE-SPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELD 126
Query: 358 PHETKEFTLDLLKHTNISDP 377
L +++ DP
Sbjct: 127 LSSMVIGWYKLFPPSSLVDP 146
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 6e-22
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLV 321
G L V ++R L D G SDP+VKL L K KT +KKK LNPE+NE F
Sbjct: 37 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 96
Query: 322 VKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPL 353
+K + + L + V+D+D +D +G + +
Sbjct: 97 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGI 130
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 1e-21
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLV 321
+ V +++A L D GTSDPYVK+ L +++ KKT KK+NLNP +NE+F
Sbjct: 16 NSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFD 75
Query: 322 VKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPLK 354
+ + + + V D DK+ +D +G + K
Sbjct: 76 IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWK 110
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 6e-21
Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLV 321
G L V ++ A L K D G SDPYVK+ L G++L KKTT+KK LNP +NE+F
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 322 VKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPL 353
V + + + V D+DK+G +D +G V
Sbjct: 85 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGY 118
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 87.9 bits (218), Expect = 8e-21
Identities = 13/96 (13%), Positives = 34/96 (35%), Gaps = 5/96 (5%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL---TGEKLPWKKTTVKKKNLNPEWNENFKL 320
+ +++ S L +++++ + +T + +NE F +
Sbjct: 43 KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWV 102
Query: 321 VVKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPLK 354
+ P + L++ V D+ + LG + L
Sbjct: 103 SMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLA 138
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 9e-21
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLV 321
L V V L+ SDPYV++ L + +KT V KK LNP ++++F
Sbjct: 24 NKLIVVVHACRNLIAFSE-DGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFS 82
Query: 322 VKEPE--SQILQLQVFDWDKVGGHDR--LGMQLVPLKLLTPHETKEFTLDLLKHT 372
V PE + L + V + D+ LG LV L + DL + +
Sbjct: 83 VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDS 137
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 1e-20
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLV 321
L V V++A L K D G SDPYVK++L +++ KKT VKK N +NE F
Sbjct: 30 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 89
Query: 322 VKEPESQI----LQLQVFDWDKVGGHDRLGMQLVPL 353
+ P + ++ V D ++ ++ +G ++
Sbjct: 90 I--PCESLEEISVEFLVLDSERGSRNEVIGRLVLGA 123
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 2e-20
Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 6/116 (5%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFK-- 319
G L + V+ L+ +D +PYVK L K +KT + +K NP +NE
Sbjct: 20 GTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYS 78
Query: 320 -LVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNI 374
+ + LQL V + + + LG +PLK + L T +
Sbjct: 79 GYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAATYL 134
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 4e-20
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW--KKTTVKKKNLNPEWNENFKLV 321
L V ++ A L ++ +PYVK+ ++ ++T KK L P+WN+ F
Sbjct: 21 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 80
Query: 322 VKEPE---SQILQLQVFDWDKVGGH--DRLGMQLVPLKLLTPHETKE 363
++L++ ++D +V + LG L+ L+ +
Sbjct: 81 PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 127
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 8e-20
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW--KKTTVKKKNLNPEWNENFKLV 321
L V ++ A L ++ +PYVK+ ++ ++T KK L P+WN+ F
Sbjct: 18 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 77
Query: 322 VKEPE---SQILQLQVFDWDKVGGH--DRLGMQLVPLKLLTPHETKE 363
++L++ ++D +V + LG L+ L+ +
Sbjct: 78 PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 124
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 1e-19
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLV 321
+L + ++ L+ K GT DPYVK+SL +L +KT +P ++E+F
Sbjct: 27 RVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFP 85
Query: 322 VKEPESQI-LQLQVFDWDKVGGHDR-LGMQLVPLK 354
V+E + Q L + V++ +G +K
Sbjct: 86 VQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVK 120
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 76.5 bits (187), Expect = 5e-15
Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKL- 320
+ L V RA L +D Y+K+ G++ +T V N NP W +
Sbjct: 392 GLAHLVVSNFRAEHLWGDYT-TATDAYLKVFFGGQE---FRTGVVWNNNNPRWTDKMDFE 447
Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLK 354
V L++QV+D D D LG
Sbjct: 448 NVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPH 481
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 8e-14
Identities = 24/132 (18%), Positives = 57/132 (43%), Gaps = 17/132 (12%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNP-EWNENFKLVVKE 324
L V + S+L G +D K++ G+ + V + + +++E F+ V
Sbjct: 23 LIVHLKTVSELR-----GRADRIAKVTFRGQS---FYSRVLENCEDVADFDETFRWPVAS 74
Query: 325 P--ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQ 382
+++L++Q+F++ KV + +G + L+ + E + L+ D +
Sbjct: 75 SIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLI------DDNNAII 128
Query: 383 RGKIVVELTYVP 394
+ + +E+ Y
Sbjct: 129 KTSLSMEVRYQA 140
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 4e-10
Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
+L V V +A ++ + YV L + K TT+ + P W ++F +
Sbjct: 5 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVK----STTIAVRGSQPSWEQDFMFEIN 57
Query: 324 EPESQILQLQVFDWDKVGGHDRLGMQLVPLK 354
+ + ++V++ + +G +PL+
Sbjct: 58 RLDLGLT-VEVWN-KGLIWDTMVGTVWIPLR 86
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 9e-10
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Query: 266 LHVKVVRASKLLKKDFLGTS--DPYVKLSLTG---EKLPWKKTTVKKKNLNPEWNENFKL 320
L V+++ +L K + S DP V + + G + + + NP W+ F+
Sbjct: 499 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 558
Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTP 358
V P+ +++ V D+D +D +G +P L
Sbjct: 559 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQ 596
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 55.0 bits (131), Expect = 3e-08
Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 13/104 (12%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNL---NPEWNENFKLVV 322
L + ++ A +L K Y +L L + +TT K ++ W E+F+
Sbjct: 13 LKLWIIEARELPPKK-----RYYCELCLDDM--LYARTTSKPRSASGDTVFWGEHFEFNN 65
Query: 323 KEPESQILQLQVFDWDKVGGHDR---LGMQLVPLKLLTPHETKE 363
+ D DK D+ +G+ VP+ L E
Sbjct: 66 LPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTE 109
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 5e-08
Identities = 16/91 (17%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
+L V V +A ++ + YV L + + TT+ + P W ++F +
Sbjct: 14 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQ----NVESTTIAVRGSQPSWEQDFMFEIN 66
Query: 324 EPESQILQLQVFDWDKVGGHDRLGMQLVPLK 354
+ + ++V++ + +G +PL+
Sbjct: 67 RLDLGLT-VEVWN-KGLIWDTMVGTVWIPLR 95
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 1e-05
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 11/136 (8%)
Query: 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKL 320
+G L V V+ A++L G S+PY ++S+ + T + LNP+WN N +
Sbjct: 384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQ---SYTTRTIQDTLNPKWNFNCQF 440
Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLK-LLTPHETKEFTLDLLKHTNISDPKD 379
+K+ +L L +FD D+ D LG +P+ + T E+K L +
Sbjct: 441 FIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV----- 495
Query: 380 MKQRGKIVVELTYVPF 395
G++ V F
Sbjct: 496 --PTGEVWVRFDLQLF 509
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} Length = 138 | Back alignment and structure |
|---|
Score = 39.3 bits (91), Expect = 6e-04
Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 5/76 (6%)
Query: 264 GILHVKVVRASKLLKKDFLG-TSDPYVKLSLTGEKLPWKKTTV--KKKNLNPEWNENFKL 320
L + + + G +PY + + KK + P W+ F
Sbjct: 10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDA 69
Query: 321 VVKEPESQILQLQVFD 336
+ + +++Q+ V
Sbjct: 70 HIN--KGRVMQIIVKG 83
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A Length = 816 | Back alignment and structure |
|---|
Score = 41.1 bits (95), Expect = 7e-04
Identities = 18/106 (16%), Positives = 45/106 (42%), Gaps = 15/106 (14%)
Query: 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG-----EKLPWKKTTVKKKNLNPEW 314
G + +K++ A L K YV++ + G + +K ++ ++P +
Sbjct: 646 GVVAGTIEIKIISAQFLSDKQI----SSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYY 701
Query: 315 NEN--FKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTP 358
+E V P+ ++++ V + + +G +++PL + P
Sbjct: 702 DEKVFVFKKVVLPDLAVVRIIVSEEN----GKFIGHRVMPLDGIKP 743
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 477 | |||
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.96 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.95 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.87 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.87 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.85 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.85 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.85 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.84 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.84 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.84 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.84 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.82 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.8 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.8 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.79 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.79 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.79 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.79 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.77 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.77 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.76 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.75 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.75 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.75 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.75 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.75 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.75 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.74 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.74 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.74 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.73 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.73 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.71 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.71 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.71 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.7 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.68 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.68 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.66 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.62 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.59 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.55 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.52 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.47 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.44 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.29 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.18 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 99.15 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.14 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.09 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.08 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.07 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.07 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.06 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.06 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.06 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.06 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.06 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 99.05 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.05 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.02 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.02 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.01 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.01 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.01 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.0 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 98.99 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.97 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 98.9 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 98.87 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 98.84 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 98.78 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 98.76 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 98.76 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 98.73 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 98.7 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 98.7 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 98.69 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 98.62 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 98.59 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 98.56 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 98.56 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 98.52 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 98.41 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 98.32 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 98.27 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 98.1 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 98.06 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 97.84 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 97.77 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 97.68 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 97.37 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 97.2 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 97.11 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 96.92 | |
| 3l4c_A | 220 | Dedicator of cytokinesis protein 1; DOCK180, DOCK1 | 93.93 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 93.06 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 92.96 | |
| 2yrb_A | 156 | Protein fantom; beta sandwich, NPPSFA, national pr | 92.55 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 89.25 | |
| 3hhm_A | 1091 | Phosphatidylinositol-4,5-bisphosphate 3-kinase cat | 89.17 | |
| 1e7u_A | 961 | Phosphatidylinositol 3-kinase catalytic subunit; p | 83.45 |
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.2e-29 Score=242.37 Aligned_cols=182 Identities=31% Similarity=0.429 Sum_probs=156.4
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEEEe
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFD 336 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V~d 336 (477)
.....|.|+|+|++|++|+.+|..|.+||||+++++++....++|+++++|+||.|||+|.|.+... ....|.|+|||
T Consensus 14 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d 93 (284)
T 2r83_A 14 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYD 93 (284)
T ss_dssp EETTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEE
T ss_pred EECCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEE
Confidence 4456799999999999999999889999999999987655567899999999999999999998642 35799999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEecccCcccccccccccccCCCCC
Q 011813 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGN 416 (477)
Q Consensus 337 ~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~ 416 (477)
+|.+++|++||++.++|.++..+.....|++|..... ......|+|+++++|.|
T Consensus 94 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~----~~~~~~G~i~l~l~~~p---------------------- 147 (284)
T 2r83_A 94 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEK----EEQEKLGDICFSLRYVP---------------------- 147 (284)
T ss_dssp CCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSS----CCCCCCCEEEEEEEEET----------------------
T ss_pred CCCCCCCceeEEEEEcchhcccCCcceeEEEeecccc----ccccccccEEEEEEecC----------------------
Confidence 9999999999999999999998888889998865311 12346799999999987
Q ss_pred CCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC-----eEeeeeeeeeccCccceec
Q 011813 417 DQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-----DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 417 ~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~-----~~~kTkv~~~t~~P~~~~~ 476 (477)
..+.|.|.|++|+||+. ++.+||||++++.+ .++||+++++|+||.||..
T Consensus 148 ----------~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~ 205 (284)
T 2r83_A 148 ----------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNES 205 (284)
T ss_dssp ----------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEE
T ss_pred ----------cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEcee
Confidence 56899999999999986 46899999999852 3559999999999999953
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-28 Score=236.23 Aligned_cols=181 Identities=29% Similarity=0.443 Sum_probs=149.0
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEEEe
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFD 336 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V~d 336 (477)
.....|.|.|+|++|++|+.+|..|.+||||++++.+.....++|+++++|+||+|||+|.|.+... ....|+|+|||
T Consensus 15 y~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d 94 (296)
T 1dqv_A 15 YLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYD 94 (296)
T ss_dssp CCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEE
T ss_pred EeCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEE
Confidence 4556799999999999999999999999999999965444567999999999999999999998633 24589999999
Q ss_pred cCCCCCCCeeEEEEEE-CcccCC-CCceEEEEecccccCCCCCCCCccceEEEEEEEEEecccCcccccccccccccCCC
Q 011813 337 WDKVGGHDRLGMQLVP-LKLLTP-HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGS 414 (477)
Q Consensus 337 ~d~~~~d~~lG~~~v~-L~~l~~-~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~ 414 (477)
+|.+++|++||++.++ +.++.. ......|+++.... ......|+|++.+.|.|
T Consensus 95 ~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~-----~~~~~~G~i~vsl~y~~-------------------- 149 (296)
T 1dqv_A 95 FDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGG-----SEKADLGELNFSLCYLP-------------------- 149 (296)
T ss_dssp CCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCS-----SCCSCCCEEEEEEEEET--------------------
T ss_pred cCCCCCCceEEEEEeccccccccCCccceeeecccccc-----ccccccceEEEEEEecc--------------------
Confidence 9999999999999996 444432 33445666664321 12456899999999987
Q ss_pred CCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc--C---eEeeeeeeeeccCccceec
Q 011813 415 GNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK--G---DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 415 ~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~--~---~~~kTkv~~~t~~P~~~~~ 476 (477)
..|.|.|+|++|+||+. .+.+||||++++. + +++||+++++|+||.||..
T Consensus 150 ------------~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~ 207 (296)
T 1dqv_A 150 ------------TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEA 207 (296)
T ss_dssp ------------TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEEC
T ss_pred ------------ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECce
Confidence 57899999999999986 4678999999996 2 4569999999999999964
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=168.86 Aligned_cols=128 Identities=31% Similarity=0.451 Sum_probs=109.2
Q ss_pred CCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecC---CCCeEEEEEEec
Q 011813 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP---ESQILQLQVFDW 337 (477)
Q Consensus 261 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~---~~~~L~v~V~d~ 337 (477)
...|.|+|+|++|++|+..+. |.+||||+++++++. ++|++++++.||+|||+|.|.+... ....|.|+|||+
T Consensus 4 ~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~---~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~ 79 (140)
T 2dmh_A 4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEK---KKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDF 79 (140)
T ss_dssp CBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCE---EECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEET
T ss_pred CCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEe---EEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEEC
Confidence 457999999999999999998 999999999998754 5999999999999999999999753 357899999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEec
Q 011813 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (477)
Q Consensus 338 d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~ 395 (477)
|.+++|++||++.++|.++..+.....|+++.+..+. .+....|+|+++++|.|.
T Consensus 80 d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~---~~~~~~G~l~l~~~~~p~ 134 (140)
T 2dmh_A 80 ETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNE---KGQDTGATIDLVIGYDPP 134 (140)
T ss_dssp TCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECT---TCCEEEEEEEEEEEECCC
T ss_pred CCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCC---CCCCCCCEEEEEEEEECC
Confidence 9999999999999999999888877788773322222 124567999999999984
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=169.33 Aligned_cols=126 Identities=32% Similarity=0.519 Sum_probs=110.1
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeC-CCCCCeeeeEEEEEeecCCCCeEEEEEEec
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEPESQILQLQVFDW 337 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~-~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~ 337 (477)
...+.|.|+|+|++|++|+..+..|.+||||+++++++. ++|++++ ++.||+|||+|.|.+.+ ....|.|+|||+
T Consensus 5 ~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d~ 80 (136)
T 1wfj_A 5 SSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQD---QKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFDK 80 (136)
T ss_dssp CCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCE---EECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECCS
T ss_pred CCCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCcc---ceeEeccCCCCCCccCcEEEEEECC-CCCEEEEEEEEC
Confidence 456889999999999999999988999999999998764 4899998 89999999999999987 567999999999
Q ss_pred CCCCCCCeeEEEEEECccc-CCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEecc
Q 011813 338 DKVGGHDRLGMQLVPLKLL-TPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFK 396 (477)
Q Consensus 338 d~~~~d~~lG~~~v~L~~l-~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~ 396 (477)
|.+++|++||++.++|.++ ..+.....|++|.. +.+..|+|+++++|.|..
T Consensus 81 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~--------~~~~~G~i~l~l~~~p~~ 132 (136)
T 1wfj_A 81 DVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK--------DEEYKGEIWVALSFKPSG 132 (136)
T ss_dssp SSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE--------TTEEEEEEEEEEEEEECC
T ss_pred CCCCCCceEEEEEEEHHHhccCCCCCcEEEEeec--------CCccCEEEEEEEEEEeCC
Confidence 9999999999999999999 44445567787752 357899999999999943
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.85 E-value=7.5e-21 Score=167.69 Aligned_cols=129 Identities=33% Similarity=0.514 Sum_probs=102.5
Q ss_pred cCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcc---cCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEe
Q 011813 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK---LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFD 336 (477)
Q Consensus 260 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~---~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d 336 (477)
....|.|+|+|++|++|+.++..|.+||||++++.+.. ...++|+++++|+||+|||+|.|.+... ...|.|+|||
T Consensus 16 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~l~~~V~d 94 (153)
T 3b7y_A 16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ-QHRLLFEVFD 94 (153)
T ss_dssp CTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT-TCEEEEEEEE
T ss_pred CCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC-CCEEEEEEEE
Confidence 45679999999999999999988999999999998532 2457999999999999999999999764 5789999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCce------EEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 337 WDKVGGHDRLGMQLVPLKLLTPHETK------EFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 337 ~d~~~~d~~lG~~~v~L~~l~~~~~~------~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
+|.+++|++||++.++|.++..+... ..|++|.... ......|+|+++++|.|
T Consensus 95 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~-----~~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 95 ENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRS-----HKSRVKGYLRLKMTYLP 153 (153)
T ss_dssp CCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSS-----TTCCCCSEEEEEEEECC
T ss_pred CCCCcCCCeeEEEEEEHHHcccCCCccccccccccccccccc-----CCCCcceEEEEEEEEeC
Confidence 99999999999999999999866532 4777775421 12467899999999986
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=8.7e-21 Score=161.54 Aligned_cols=121 Identities=26% Similarity=0.405 Sum_probs=104.9
Q ss_pred ceEEEEEEEEcccccc---ccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCC
Q 011813 263 VGILHVKVVRASKLLK---KDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDK 339 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~---~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~ 339 (477)
.|.|+|+|++|++|+. .+..|.+||||++++++.....++|+++++|+||+|||+|.|.+.......|.|+|||+|.
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~ 81 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence 5899999999999998 4667899999999998754456799999999999999999999976667899999999998
Q ss_pred CCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 340 ~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
. +|++||++.++|.++..+.....|++|. ....|+|+++++-.|
T Consensus 82 ~-~~~~iG~~~i~l~~l~~~~~~~~~~~L~----------~~~~g~i~~~le~~~ 125 (126)
T 1rlw_A 82 V-MDETLGTATFTVSSMKVGEKKEVPFIFN----------QVTEMVLEMSLEVAS 125 (126)
T ss_dssp S-CCEEEEEEEEEGGGSCTTCEEEEEEEET----------TTEEEEEEEEEECCC
T ss_pred C-CCceeEEEEEEHHHccCCCcEEEEEEcC----------CCceEEEEEEEEeCC
Confidence 7 4899999999999999888888999884 245788888876544
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.8e-21 Score=168.83 Aligned_cols=119 Identities=27% Similarity=0.317 Sum_probs=102.7
Q ss_pred ccCCceEEEEEEEEcccccccccc----------CCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCC
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFL----------GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQ 328 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~----------g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~ 328 (477)
+....|.|+|+|++|++|+++|.. |.+||||++++++++ ..+|+++++|+||+|||+|.|.+.+ ..
T Consensus 24 ~~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~--~~kT~v~~ktlnP~WNE~F~f~v~~--~~ 99 (157)
T 2fk9_A 24 TMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVR--VGQTSTKQKTNKPTYNEEFCANVTD--GG 99 (157)
T ss_dssp CCCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEE--EEECCCCSSCSSCEEEEEEEEEEEE--EC
T ss_pred hccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEe--eEEeeecCCCCCCccCcEEEEEcCC--CC
Confidence 446789999999999999988842 679999999998654 3589999999999999999999975 36
Q ss_pred eEEEEEEecCCCCCCCeeEEEEEECcccCCC----CceEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 011813 329 ILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH----ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (477)
Q Consensus 329 ~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~----~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (477)
.|.|+|||+|.+++|++||++.++|.++..+ ...+.|++|. ..|+|+++++|.
T Consensus 100 ~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~------------~~G~i~l~l~~~ 156 (157)
T 2fk9_A 100 HLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE------------PEGKVFVVITLT 156 (157)
T ss_dssp EEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB------------SSCEEEEEEEEC
T ss_pred EEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECC------------CCcEEEEEEEEE
Confidence 8999999999999999999999999998754 5678999873 279999999873
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=8.3e-21 Score=163.35 Aligned_cols=126 Identities=35% Similarity=0.518 Sum_probs=107.8
Q ss_pred cccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEec
Q 011813 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDW 337 (477)
Q Consensus 258 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~ 337 (477)
....+.|.|+|+|++|++|+..+..|.+||||+++++++. ++|+++++|.||.|||+|.|.+.+. ...|.|+|||+
T Consensus 7 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~~~~~t~nP~wne~f~f~~~~~-~~~l~i~V~d~ 82 (133)
T 2ep6_A 7 GDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDR---LQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDE 82 (133)
T ss_dssp CSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEE---EECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEE
T ss_pred cccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEE---EEeeeecCCCCCccccEEEEEecCC-CCEEEEEEEEC
Confidence 4567889999999999999999988999999999998754 4899999999999999999999864 57899999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 338 d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
|..++|++||++.++|.++..+.. .|++|.... .+....|+|+++++|..
T Consensus 83 d~~~~~~~lG~~~i~l~~l~~~~~--~w~~L~~~~-----~~~~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 83 DGDKPPDFLGKVAIPLLSIRDGQP--NCYVLKNKD-----LEQAFKGVIYLEMDLIY 132 (133)
T ss_dssp ETTEEEEECCBCEEEGGGCCSSCC--EECCCBCSC-----TTSCCSSEEEEEEEEEE
T ss_pred CCCCCCCeeEEEEEEHHHccCCCc--eEEEeecCC-----CCCccceEEEEEEEEEe
Confidence 998899999999999999976554 566664321 12467899999999874
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=162.48 Aligned_cols=117 Identities=24% Similarity=0.342 Sum_probs=101.1
Q ss_pred CceEEEEEEEEccccccccccCC-----------CCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeE
Q 011813 262 PVGILHVKVVRASKLLKKDFLGT-----------SDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQIL 330 (477)
Q Consensus 262 ~~G~L~V~v~~A~~L~~~d~~g~-----------~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L 330 (477)
..|.|+|+|++|++|++.|..++ +||||++++++.. ..+|+++++|+||+|||+|.|.+.+. ..|
T Consensus 4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~--~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L 79 (136)
T 1gmi_A 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSR--IGQTATKQKTNSPAWHDEFVTDVCNG--RKI 79 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEE--EEECCCCSSCSSCEEEEEEEEEEEEE--CEE
T ss_pred cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeE--eeeeeEECCCcCCccCCEEEEEecCC--CEE
Confidence 46999999999999998886554 9999999997653 35899999999999999999999764 789
Q ss_pred EEEEEecCCCCCCCeeEEEEEECcccCCCC--ceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 331 QLQVFDWDKVGGHDRLGMQLVPLKLLTPHE--TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 331 ~v~V~d~d~~~~d~~lG~~~v~L~~l~~~~--~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
.|+|||+|.+++|++||++.++|.++..+. ....|+++. +.|+|+++++|.+
T Consensus 80 ~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~------------~~G~i~l~l~~~~ 133 (136)
T 1gmi_A 80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE------------PEGKVYVIIDLSG 133 (136)
T ss_dssp EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB------------SSCEEEEEEEEEE
T ss_pred EEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcC------------CCeEEEEEEEEEe
Confidence 999999999999999999999999998653 347788752 3799999999986
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=6.6e-20 Score=160.67 Aligned_cols=123 Identities=30% Similarity=0.436 Sum_probs=103.8
Q ss_pred cCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCC
Q 011813 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDK 339 (477)
Q Consensus 260 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~ 339 (477)
....|.|+|+|++|++|+.+|..|.+||||+++++++. ++|+++++|+||.|||+|.|.+... .+.|.++|||+|.
T Consensus 13 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~d~d~ 88 (148)
T 3kwu_A 13 SKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTK---KRTKTIYGNLNPVWEENFHFECHNS-SDRIKVRVLDEDD 88 (148)
T ss_dssp --CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEE---EECCCCCSCSSCEEEEEEEEEECST-TCEEEEEEEECCC
T ss_pred cccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEE---EECCccCCCCCCCcccEEEEEecCC-CCEEEEEEEECCC
Confidence 34579999999999999999999999999999997644 5999999999999999999999765 4789999999997
Q ss_pred C-----------CCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 011813 340 V-----------GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (477)
Q Consensus 340 ~-----------~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (477)
. ++|++||++.++|.++. .....|++|.... ......|+|+++++|.
T Consensus 89 ~~~~~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~~~-----~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 89 DIKSRVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDKRT-----DKSAVSGAIRLHISVE 146 (148)
T ss_dssp SHHHHHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBCSS-----TTCCCCCEEEEEEEEE
T ss_pred CccccccccccCCCCccEEEEEEEHHHCc--CCCCEEEEcccCC-----CCCCCceEEEEEEEEE
Confidence 5 78999999999999994 3556788775421 1245789999999985
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.2e-20 Score=166.90 Aligned_cols=130 Identities=32% Similarity=0.498 Sum_probs=100.9
Q ss_pred cCCceEEEEEEEEccccccccccCCCCcEEEEEEcCccc---CceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEe
Q 011813 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL---PWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFD 336 (477)
Q Consensus 260 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~---~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d 336 (477)
....|.|+|+|++|++|+.++..|.+||||++++++... ..++|+++++++||.|||+|.|.+.. ....|.|+|||
T Consensus 4 ~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~-~~~~L~~~V~d 82 (176)
T 3m7f_B 4 NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLP-QRHRILFEVFD 82 (176)
T ss_dssp CTTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECT-TTCEEEEEEEE
T ss_pred CCCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcC-CCCEEEEEEEE
Confidence 346799999999999999999889999999999985322 35699999999999999999999975 35789999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCce-E-----EEEecccccCCCCCCCCccceEEEEEEEEEec
Q 011813 337 WDKVGGHDRLGMQLVPLKLLTPHETK-E-----FTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (477)
Q Consensus 337 ~d~~~~d~~lG~~~v~L~~l~~~~~~-~-----~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~ 395 (477)
++.+++|++||++.++|.++..+... + .|++|.... ...+..|+|+|+++|.|.
T Consensus 83 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 83 ENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRS-----HKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp CC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSS-----TTCCCCSEEEEEEEECC-
T ss_pred CCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccC-----CCCccCEEEEEEEEEEeC
Confidence 99999999999999999999876443 1 677775431 135578999999999996
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-19 Score=154.30 Aligned_cols=125 Identities=29% Similarity=0.433 Sum_probs=100.9
Q ss_pred CceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCC
Q 011813 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (477)
Q Consensus 262 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~ 341 (477)
....|+|+|++|++|+.+|..|.+||||++++++.. ..++|+++++|+||+|||+|.|.+.+. +.|.|+|||+|.++
T Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~--~~l~~~v~d~d~~~ 79 (132)
T 3pyc_A 3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSG-QCHSTDTVKNTLDPKWNQHYDLYVGKT--DSITISVWNHKKIH 79 (132)
T ss_dssp SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTC-CEEECCCCSSCSSCEEEEEEEEEEETT--CCEEEEEEEGGGTT
T ss_pred CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCC-ceEECCccCCCCCCCccCEEEEEeCCC--CEEEEEEEECCCCC
Confidence 357899999999999999999999999999997642 457999999999999999999999764 35999999999887
Q ss_pred C---CCeeEEEEEECccc-CCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 011813 342 G---HDRLGMQLVPLKLL-TPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (477)
Q Consensus 342 ~---d~~lG~~~v~L~~l-~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (477)
+ |++||++.+++.++ ........+++|... .+. ...+..|+|++++++
T Consensus 80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~-~~~--~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 80 KKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKL-NPS--DTDAVRGQIVVSLQT 131 (132)
T ss_dssp SSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCS-STT--CCCCCCSEEEEEEEE
T ss_pred CCCCCCceEEEEEeHHHhhcccccCcEEEeeeec-CCC--CCCceeEEEEEEEEc
Confidence 6 89999999999988 333333466776542 111 124579999999875
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.3e-20 Score=161.25 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=95.9
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcC---cccCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG---EKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ 333 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~---~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~ 333 (477)
.....+.|+|+|++|+||+++|..|.+||||++++.+ ....++||+++++|+||+|||+|.|.+... ....|.|+
T Consensus 38 y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~ 117 (155)
T 2z0u_A 38 YDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVD 117 (155)
T ss_dssp EETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEE
T ss_pred EcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEE
Confidence 4456799999999999999999999999999999986 333357999999999999999999998642 25689999
Q ss_pred EEecCCCCCCCeeEEEEEECcccCC-CCceEEEEecc
Q 011813 334 VFDWDKVGGHDRLGMQLVPLKLLTP-HETKEFTLDLL 369 (477)
Q Consensus 334 V~d~d~~~~d~~lG~~~v~L~~l~~-~~~~~~~~~l~ 369 (477)
|||+|.+++|++||++.++|+++.. +.....|++|.
T Consensus 118 V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 118 VCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp EEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred EEECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 9999999999999999999999964 56677888764
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.7e-19 Score=154.92 Aligned_cols=112 Identities=33% Similarity=0.430 Sum_probs=99.5
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEEEe
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFD 336 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V~d 336 (477)
.....+.|+|+|++|++|+..+..+.+||||++++.+.....++|+++++|.||+|||+|.|.+... ....|.|+|||
T Consensus 29 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d 108 (143)
T 3f04_A 29 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD 108 (143)
T ss_dssp EETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred EeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEe
Confidence 4457799999999999999999889999999999976555568999999999999999999998632 35789999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 011813 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 337 ~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
+|.+++|++||++.++|.++..+.....|++|.+
T Consensus 109 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 142 (143)
T 3f04_A 109 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp CCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred CCCCCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence 9999999999999999999999888889998853
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.2e-19 Score=154.99 Aligned_cols=112 Identities=38% Similarity=0.548 Sum_probs=98.4
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeec---CCCCeEEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQVF 335 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~---~~~~~L~v~V~ 335 (477)
.....+.|+|+|++|++|+.++..|.+||||++++.+.....++|+++++|.||+|||+|.|.+.. .....|.|+||
T Consensus 21 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~ 100 (141)
T 2d8k_A 21 YNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVL 100 (141)
T ss_dssp ECSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEE
T ss_pred EeCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEE
Confidence 445679999999999999999988999999999997654456799999999999999999998532 23578999999
Q ss_pred ecCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 011813 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 336 d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
|+|.+++|++||++.++|.++..+.....|++|.+
T Consensus 101 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 135 (141)
T 2d8k_A 101 DYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKP 135 (141)
T ss_dssp ECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEE
T ss_pred ECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcC
Confidence 99999999999999999999998888889998865
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.9e-19 Score=159.14 Aligned_cols=126 Identities=18% Similarity=0.252 Sum_probs=102.5
Q ss_pred cCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCC
Q 011813 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDK 339 (477)
Q Consensus 260 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~ 339 (477)
....+.|+|+|++|++|+..+..+.+||||++++++ ..++|+++++|+||+|||+|.|.+.. ...|.|+|||+|.
T Consensus 32 ~~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~---~~~kT~v~~~tlnP~Wne~f~f~v~~--~~~L~~~V~D~d~ 106 (173)
T 2nq3_A 32 LTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG---QSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQT 106 (173)
T ss_dssp CSCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETT---EEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCS
T ss_pred cCCceEEEEEEEEeECCCCcccCCCCCeEEEEEECC---EEeEccccCCCCCCeECCEEEEEeCC--CCEEEEEEEECCC
Confidence 345789999999999999444345599999999987 34699999999999999999999853 6799999999999
Q ss_pred CCCCCeeEEEEEECcccCCCC-----ceEEEEecccccCCCCCCCCccceEEEEEEEEEec
Q 011813 340 VGGHDRLGMQLVPLKLLTPHE-----TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (477)
Q Consensus 340 ~~~d~~lG~~~v~L~~l~~~~-----~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~ 395 (477)
+++|++||++.++|.++..+. ....|++|... . .+....|+|+++++|++.
T Consensus 107 ~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~-~----~~~~~~G~L~v~l~~l~~ 162 (173)
T 2nq3_A 107 LKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD-K----EPTETIGDLSICLDGLQL 162 (173)
T ss_dssp SSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES-S----CTTSEEEEEEEEEESEEC
T ss_pred CCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccC-C----CCCcccEEEEEEEeeeec
Confidence 999999999999999986432 12567777653 1 134678999999999985
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=6.3e-19 Score=155.18 Aligned_cols=112 Identities=33% Similarity=0.430 Sum_probs=99.0
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEEEe
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFD 336 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V~d 336 (477)
.....+.|+|+|++|++|+..+..+.+||||++++.+.....++|+++++|.||+|||+|.|.+... ....|.|+|||
T Consensus 37 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d 116 (152)
T 1rsy_A 37 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD 116 (152)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred EeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEE
Confidence 4456799999999999999999889999999999976544567999999999999999999988632 35789999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 011813 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 337 ~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
+|.+++|++||++.++|.++..+.....|++|..
T Consensus 117 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 150 (152)
T 1rsy_A 117 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 150 (152)
T ss_dssp CCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred CCCCCCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence 9999999999999999999988888889998853
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.3e-19 Score=151.05 Aligned_cols=111 Identities=24% Similarity=0.282 Sum_probs=95.9
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEE-eec--CCCCeEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLV-VKE--PESQILQLQ 333 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~-v~~--~~~~~L~v~ 333 (477)
.....|.|+|+|++|++|+. +..|.+||||++++.+. ....++|+++++|+||+|||+|.|. +.. .....|.|+
T Consensus 15 ~~~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~ 93 (134)
T 2b3r_A 15 VSYRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLS 93 (134)
T ss_dssp EEEETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEE
T ss_pred EeecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEE
Confidence 34456999999999999997 77889999999999543 3446799999999999999999999 753 245789999
Q ss_pred EEecCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 011813 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 334 V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
|||+|.+++|++||++.++|.++..+.....|++|..
T Consensus 94 V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~ 130 (134)
T 2b3r_A 94 VLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTA 130 (134)
T ss_dssp EEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC
T ss_pred EEECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCC
Confidence 9999999999999999999999998888889998854
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.1e-18 Score=148.18 Aligned_cols=112 Identities=25% Similarity=0.377 Sum_probs=95.0
Q ss_pred ccCCceEEEEEEEEcccccccccc-CCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEE-eecC--CCCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV-VKEP--ESQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~-g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~-v~~~--~~~~L~v~V 334 (477)
.....+.|.|+|++|++|+.+|.. +.+||||++++.+.....++|+++++|+||+|||+|.|. +... ....|.|+|
T Consensus 17 y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V 96 (138)
T 1ugk_A 17 YNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTI 96 (138)
T ss_dssp EEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEE
T ss_pred EECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEE
Confidence 345679999999999999999985 899999999998654466899999999999999999996 6432 246899999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCc-eEEEEeccc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHET-KEFTLDLLK 370 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~-~~~~~~l~~ 370 (477)
||+|.+++|++||++.++|.++..+.. ...|+++.+
T Consensus 97 ~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~ 133 (138)
T 1ugk_A 97 LSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133 (138)
T ss_dssp EEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred EECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence 999999999999999999999987644 456787754
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-17 Score=174.55 Aligned_cols=177 Identities=23% Similarity=0.318 Sum_probs=136.5
Q ss_pred eeEEEEEcCCCce-EEEEEEEeCccccc-ccchhHHHHHHHHHhhhccccC-----Cceeee-ecC--------------
Q 011813 195 FATMVVSLMERPH-VDFGIKILGGDIMS-IPGLYQFIQKCITKYVAGIYIW-----PQTYEI-PIL-------------- 252 (477)
Q Consensus 195 ~~~~~~sf~~~P~-id~~~~~~g~~~~~-iP~l~~~i~~~i~~~i~~~~v~-----P~~~~i-~i~-------------- 252 (477)
+..|.=|+...|. |++.+.|+ .++.. .+.....++.++.+++.+.-.+ |..-.. ++.
T Consensus 304 ~~~W~~Sv~~~P~~I~~~l~PI-~~Lv~~~~~kr~nLk~Ai~~Yl~e~~~c~~C~~PC~nn~~~l~g~~C~C~C~~~~~t 382 (540)
T 3nsj_A 304 FSTWTASLPSNPGLVDYSLEPL-HTLLEEQNPKREALRQAISHYIMSRARWQNCSRPCRSGQHKSSHDSCQCECQDSKVT 382 (540)
T ss_dssp HHHHHHHTTTSCEEEEEEEEEG-GGGSCTTCTHHHHHHHHHHHHHHHTCBCCCTTSCCBTTEEECSSCTTCEEESCTTTB
T ss_pred HHHHHHHHhhCCceEEEEEEEH-HHhcCCcHHHHHHHHHHHHHHHHhcCchhhhcccccCCCccCCCCceEeeCCCCCCc
Confidence 4556666677884 59999998 56554 4667789999999999887766 421111 121
Q ss_pred CcccccccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeec-CCCCeEE
Q 011813 253 DASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE-PESQILQ 331 (477)
Q Consensus 253 ~~~~~~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~-~~~~~L~ 331 (477)
...++......|.|+|+|++|++|+. |..|++||||+++++++. .+|+++++++||+|||+|.|.+.+ ...+.|+
T Consensus 383 ~~~~C~~~~~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~---~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~ 458 (540)
T 3nsj_A 383 NQDCCPRQRGLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQE---FRTGVVWNNNNPRWTDKMDFENVLLSTGGPLR 458 (540)
T ss_dssp CGGGCBSSTTEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEE---EECCCBCSCSSCBCCCCEEEEEEETTTCCCEE
T ss_pred ccccccccCcccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEe---eeeeeecCCCCCCCCeEEEEEEecCCCCCEEE
Confidence 11223455668999999999999998 989999999999998653 699999999999999999998653 3567899
Q ss_pred EEEEecCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 011813 332 LQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (477)
Q Consensus 332 v~V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (477)
|+|||+|..++||+||++.++|.. ...+.|+.+ ..|+|+++++..
T Consensus 459 ~~V~D~D~~~~dD~LG~~~~~L~~----g~~~~~~~l-------------~~G~l~~~~~~~ 503 (540)
T 3nsj_A 459 VQVWDADYGWDDDLLGSCDRSPHS----GFHEVTCEL-------------NHGRVKFSYHAK 503 (540)
T ss_dssp EEEEECCSSSCCEEEEEEEECCCS----EEEEEEEEC-------------SSSEEEEEEEEE
T ss_pred EEEEECCCCCCCCEEEEEEEEeeC----CcEEEEEEc-------------CCeEEEEEEEEE
Confidence 999999999999999999999882 235566654 258888887644
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-18 Score=147.98 Aligned_cols=109 Identities=21% Similarity=0.195 Sum_probs=93.2
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc-ccCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE-KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVF 335 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~-~~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V~ 335 (477)
.....+.|+|+|++|++ +|..|.+||||++++.+. ....++|+++++|+||+|||+|.|.+... ....|.|+||
T Consensus 21 y~~~~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~ 97 (138)
T 1wfm_A 21 YDCQKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLR 97 (138)
T ss_dssp EETTTTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEE
T ss_pred EeCCCCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEE
Confidence 45567999999999993 677899999999999642 33357999999999999999999998643 2568999999
Q ss_pred ecCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 011813 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 336 d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
|+|.+++|++||++.++|.++..+.....|++|..
T Consensus 98 d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~ 132 (138)
T 1wfm_A 98 TCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT 132 (138)
T ss_dssp ECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred ECCCCCCCcEEEEEEEEcccccCcccccceeeCcC
Confidence 99999999999999999999987777788998865
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-18 Score=151.40 Aligned_cols=112 Identities=27% Similarity=0.360 Sum_probs=94.8
Q ss_pred ccCCceEEEEEEEEccccccc-cc------cCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecC--CCCe
Q 011813 259 IKKPVGILHVKVVRASKLLKK-DF------LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQI 329 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~-d~------~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~ 329 (477)
.....|.|+|+|++|++|+.. +. .+.+||||++++.+.....++|+++++|+||+|||+|.|.+... ....
T Consensus 21 y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~ 100 (147)
T 2enp_A 21 YDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRT 100 (147)
T ss_dssp EETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSE
T ss_pred EcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCE
Confidence 455679999999999999984 33 35899999999986544567999999999999999999998632 2458
Q ss_pred EEEEEEecCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 011813 330 LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 330 L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
|.|+|||+|.+++|++||++.++|.++..+.....|+.|.+
T Consensus 101 L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~ 141 (147)
T 2enp_A 101 LLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIP 141 (147)
T ss_dssp EEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBC
T ss_pred EEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeec
Confidence 99999999999999999999999999987776678887754
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-18 Score=146.14 Aligned_cols=109 Identities=24% Similarity=0.359 Sum_probs=88.1
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEee---cCCCCeEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVK---EPESQILQLQ 333 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v~---~~~~~~L~v~ 333 (477)
.....|.|.|+|++|++|+.++..|.+||||++++.+.. ...++|+++++|.||+|||+|.|.+. +.....|.|+
T Consensus 13 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~ 92 (129)
T 2bwq_A 13 FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEIT 92 (129)
T ss_dssp EETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEE
T ss_pred EccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEE
Confidence 445679999999999999999988999999999995432 34579999999999999999999953 2235789999
Q ss_pred EEecCCCCC--CCeeEEEEEECcccCCCCceEEEEec
Q 011813 334 VFDWDKVGG--HDRLGMQLVPLKLLTPHETKEFTLDL 368 (477)
Q Consensus 334 V~d~d~~~~--d~~lG~~~v~L~~l~~~~~~~~~~~l 368 (477)
|||+|..++ |++||++.++|.++..+. ...|++|
T Consensus 93 V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L 128 (129)
T 2bwq_A 93 LWDQARVREEESEFLGEILIELETALLDD-EPHWYKL 128 (129)
T ss_dssp EEEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred EEECCcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence 999999887 999999999999987654 6678775
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-18 Score=148.62 Aligned_cols=112 Identities=30% Similarity=0.446 Sum_probs=96.9
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEE-eecC--CCCeEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLV-VKEP--ESQILQLQ 333 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~-v~~~--~~~~L~v~ 333 (477)
.....+.|.|+|++|++|+..+..|.+||||++++.+. ....++|+++++|.||+|||+|.|. +... ....|.|+
T Consensus 24 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~ 103 (142)
T 2chd_A 24 YDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRIS 103 (142)
T ss_dssp EEGGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEE
T ss_pred EeCCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEE
Confidence 34567999999999999999998899999999999753 2346799999999999999999998 5421 13689999
Q ss_pred EEecCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 011813 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 334 V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
|||+|.+++|++||++.++|.++..+.....|++|..
T Consensus 104 V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 140 (142)
T 2chd_A 104 VCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER 140 (142)
T ss_dssp EEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred EEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence 9999999999999999999999999888899988753
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-18 Score=151.73 Aligned_cols=113 Identities=24% Similarity=0.342 Sum_probs=97.8
Q ss_pred ccCCceEEEEEEEEcccccccc-ccCCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEeecCC--CCeEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQ 333 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d-~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v~~~~--~~~L~v~ 333 (477)
.....|.|.|+|++|++|+..+ ..+.+||||++++.+.. ...++|+++++|+||+|||+|.|.+.... ...|.|+
T Consensus 18 y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~ 97 (148)
T 3fdw_A 18 YEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFS 97 (148)
T ss_dssp EETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEE
T ss_pred EeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEE
Confidence 4556799999999999999888 57899999999997543 23679999999999999999999986532 4579999
Q ss_pred EEecCCCCCCCeeEEEEEECcccCCCCceEEEEecccc
Q 011813 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKH 371 (477)
Q Consensus 334 V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~ 371 (477)
|||+|.+++|++||++.++|.++..+.....|++|...
T Consensus 98 V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 135 (148)
T 3fdw_A 98 VWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGK 135 (148)
T ss_dssp EEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC
T ss_pred EEECCCCcCCcEEEEEEEEcccccccCCccceEECcCc
Confidence 99999999999999999999999877777899998653
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.7e-18 Score=149.22 Aligned_cols=111 Identities=29% Similarity=0.306 Sum_probs=93.7
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V 334 (477)
.....+.|.|+|++|++|+.++..| +||||++++.+.. ...++|+++++|+||+|||+|.|.+... ....|.|+|
T Consensus 19 y~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V 97 (142)
T 2dmg_A 19 HSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAV 97 (142)
T ss_dssp EETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEE
T ss_pred EeCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEE
Confidence 3456799999999999999999888 9999999996533 2567999999999999999999998532 245899999
Q ss_pred EecCCCCC--CCeeEEEEEECcccCCCCceEEEEeccc
Q 011813 335 FDWDKVGG--HDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 335 ~d~d~~~~--d~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
||+|.++. |++||++.++|.++..+.....|++|..
T Consensus 98 ~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~ 135 (142)
T 2dmg_A 98 KNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTE 135 (142)
T ss_dssp EECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBC
T ss_pred EECCCccccCCcEEEEEEEecccccccccccceeeccC
Confidence 99998763 5799999999999987777778888764
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=7.8e-18 Score=147.62 Aligned_cols=107 Identities=35% Similarity=0.501 Sum_probs=93.5
Q ss_pred ceEEEEEEEEccccccccccCCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEeecCC-CCeEEEEEEecCC
Q 011813 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWDK 339 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v~~~~-~~~L~v~V~d~d~ 339 (477)
.|.|+|+|++|++|+..+..+.+||||++++.+.. ...++|+++++|.||+|||+|.|.+.... ...|.|+|||+|.
T Consensus 30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~ 109 (149)
T 1a25_A 30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 109 (149)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC
Confidence 58899999999999999988999999999997532 34579999999999999999999987532 4689999999999
Q ss_pred CCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 011813 340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 340 ~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
+++|++||++.++|.++..+ ....|++|..
T Consensus 110 ~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~ 139 (149)
T 1a25_A 110 TSRNDFMGSLSFGISELQKA-GVDGWFKLLS 139 (149)
T ss_dssp SSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred CCCCCEEEEEEEEHHHhCcC-ccCCeEEccC
Confidence 99999999999999999876 4678888854
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-18 Score=150.23 Aligned_cols=108 Identities=28% Similarity=0.443 Sum_probs=93.7
Q ss_pred ceEEEEEEEEccccccccccCCCCcEEEEEEcCccc-----------CceeeeeeCCCCCCeeeeEEEEE-ee--cCCCC
Q 011813 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL-----------PWKKTTVKKKNLNPEWNENFKLV-VK--EPESQ 328 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~-----------~~~kT~v~~~t~nP~WnE~f~f~-v~--~~~~~ 328 (477)
.|.|+|+|++|++|+.+|..|.+||||++++.+... ..++|+++++|+||+|||+|.|. +. +....
T Consensus 17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~ 96 (142)
T 1rh8_A 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK 96 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence 589999999999999999899999999999987531 24689999999999999999997 54 22467
Q ss_pred eEEEEEEecCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 011813 329 ILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 329 ~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
.|.|+|||+|.+++|++||++.++|.++..+.....|++|..
T Consensus 97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~ 138 (142)
T 1rh8_A 97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE 138 (142)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBC
T ss_pred EEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCc
Confidence 899999999999999999999999999987666778888754
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.3e-18 Score=151.82 Aligned_cols=109 Identities=26% Similarity=0.354 Sum_probs=95.0
Q ss_pred CceEEEEEEEEccccccccc-cCCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEE-ec
Q 011813 262 PVGILHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF-DW 337 (477)
Q Consensus 262 ~~G~L~V~v~~A~~L~~~d~-~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~-d~ 337 (477)
..|.|.|+|++|++|+.+|. .|.+||||++++.++. ...++|+++++|+||+|||+|.|.+.. ....|.|+|| |+
T Consensus 28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~~~L~~~V~~d~ 106 (171)
T 2q3x_A 28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP-QGKVLQVIVWGDY 106 (171)
T ss_dssp ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC-TTEEEEEEEEEEC
T ss_pred CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC-CCCEEEEEEEEcC
Confidence 46999999999999999985 6899999999997542 235789999999999999999999854 4678999999 99
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecccc
Q 011813 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKH 371 (477)
Q Consensus 338 d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~ 371 (477)
|.+++|++||++.++|.++..+.....|++|...
T Consensus 107 d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 107 GRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp STTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred CCCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 9999999999999999999988888899998653
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=6.3e-18 Score=146.57 Aligned_cols=111 Identities=23% Similarity=0.355 Sum_probs=94.0
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEe-e--cCCCCeEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVV-K--EPESQILQLQ 333 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v-~--~~~~~~L~v~ 333 (477)
.....+.|+|+|++|++|+.++..+.+||||++++.+.. ...++|+++++|+||+|||+|.|.+ . +.....|.|+
T Consensus 16 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~ 95 (141)
T 1v27_A 16 FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEIT 95 (141)
T ss_dssp EETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEE
T ss_pred EeCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEE
Confidence 345569999999999999999988999999999995432 3457999999999999999999994 3 2235789999
Q ss_pred EEecCCCCC--CCeeEEEEEECcccCCCCceEEEEeccc
Q 011813 334 VFDWDKVGG--HDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 334 V~d~d~~~~--d~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
|||+|..++ |++||++.++|.++..+. ...|++|..
T Consensus 96 V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~ 133 (141)
T 1v27_A 96 LWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQT 133 (141)
T ss_dssp EEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBC
T ss_pred EEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECcc
Confidence 999999887 999999999999987654 778998865
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-17 Score=146.22 Aligned_cols=111 Identities=26% Similarity=0.362 Sum_probs=94.1
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeecC-CCCeEEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP-ESQILQLQVF 335 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~~-~~~~L~v~V~ 335 (477)
.....|.|.|+|++|++|+..+ .|.+||||++++.+. ....++|+++++|+||+|||+|.|.+... ....|.|+||
T Consensus 22 y~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~ 100 (153)
T 3fbk_A 22 IDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVW 100 (153)
T ss_dssp EEESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEE
T ss_pred EECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEE
Confidence 4567899999999999999998 699999999999643 23457999999999999999999998422 2356999999
Q ss_pred ecCCCCC-CCeeEEEEEECcccCC-CCceEEEEeccc
Q 011813 336 DWDKVGG-HDRLGMQLVPLKLLTP-HETKEFTLDLLK 370 (477)
Q Consensus 336 d~d~~~~-d~~lG~~~v~L~~l~~-~~~~~~~~~l~~ 370 (477)
|+|.+++ |++||++.++|.++.. +.....|++|..
T Consensus 101 d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~ 137 (153)
T 3fbk_A 101 NRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLG 137 (153)
T ss_dssp ECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBC
T ss_pred eCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCC
Confidence 9998877 9999999999999984 677888998865
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.7e-17 Score=144.25 Aligned_cols=112 Identities=35% Similarity=0.475 Sum_probs=92.8
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V 334 (477)
.....|.|.|+|++|+||+..+..|.+||||++++.+. ....++|+++++|+||+|||+|.|.+... ....|.|+|
T Consensus 20 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V 99 (159)
T 1tjx_A 20 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTV 99 (159)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEE
Confidence 44567999999999999999998899999999999743 22457999999999999999999998643 246799999
Q ss_pred EecCCCCCCCeeEEEEEECccc------------CCCCceEEEEeccc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLL------------TPHETKEFTLDLLK 370 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l------------~~~~~~~~~~~l~~ 370 (477)
||+|.+++|++||++.+++..+ .++.....|++|..
T Consensus 100 ~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~ 147 (159)
T 1tjx_A 100 LDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 147 (159)
T ss_dssp EECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred EECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcC
Confidence 9999999999999999999864 23345567776643
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-17 Score=141.94 Aligned_cols=99 Identities=32% Similarity=0.460 Sum_probs=85.9
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeecCC--CCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~--~~~L~v~V 334 (477)
.....|.|.|+|++|++|+..+..|.+||||++++.+. ....++|+++++|.||.|||+|.|.+.... ...|.|+|
T Consensus 11 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V 90 (138)
T 3n5a_A 11 YNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITV 90 (138)
T ss_dssp EETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEE
T ss_pred EcCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEE
Confidence 34567999999999999999998899999999999754 223578999999999999999999986432 36899999
Q ss_pred EecCCCCCCCeeEEEEEECcccC
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLT 357 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~ 357 (477)
||+|.+++|++||++.++|.++.
T Consensus 91 ~d~~~~~~~~~lG~~~i~l~~~~ 113 (138)
T 3n5a_A 91 MDKDKLSRNDVIGKIYLSWKSGP 113 (138)
T ss_dssp EECCSSSCCEEEEEEEESSSSCH
T ss_pred EECCCCCCCcEEEEEEEccccCC
Confidence 99999999999999999998754
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=9.2e-17 Score=137.56 Aligned_cols=119 Identities=18% Similarity=0.251 Sum_probs=85.0
Q ss_pred CCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeee-CCCCCCeeeeEEEEEeecCCCCeEEEEEEecCC
Q 011813 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVK-KKNLNPEWNENFKLVVKEPESQILQLQVFDWDK 339 (477)
Q Consensus 261 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~-~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~ 339 (477)
.+.|.|+|+|++|++++. .|.+||||+++ . +. .+|+++ .+|.||+|||+|.|.+.+. ...|.|+|||+|
T Consensus 2 ~~~~~L~V~V~~A~~l~~---~g~~DPYv~v~-~-~~---~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d- 71 (131)
T 2cjt_A 2 GVMSLLCVGVKKAKFDGA---QEKFNTYVTLK-V-QN---VKSTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG- 71 (131)
T ss_dssp CCCEEEEEEEEEEECSSC---GGGCEEEEEEE-E-TT---EEEECCCEESSSCEEEEEEEEEECCC-SSEEEEEEEECC-
T ss_pred CcceEEEEEEEEeECCCC---CCCcCeEEEEE-e-cC---EEEeEecCCCCCceECCEEEEEEeCC-CCeEEEEEEECC-
Confidence 356999999999998853 57899999999 2 22 245544 4799999999999999864 457999999999
Q ss_pred CCCCCeeEEEEEECcccCCCC--ceEEEEecccccCCCCCCCCcc-------ceEEEEEEEE
Q 011813 340 VGGHDRLGMQLVPLKLLTPHE--TKEFTLDLLKHTNISDPKDMKQ-------RGKIVVELTY 392 (477)
Q Consensus 340 ~~~d~~lG~~~v~L~~l~~~~--~~~~~~~l~~~~~~~~~~~~~~-------~G~l~l~l~y 392 (477)
+++|++||++.++|.++.... ....|.++...... .+++. .+.+.++++|
T Consensus 72 ~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~---~~g~~~G~~~p~~~~~~~~~~~ 130 (131)
T 2cjt_A 72 LIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIM---ADSEICGTKDPTFHRILLDAHF 130 (131)
T ss_dssp SSCEEEEEEEEEEGGGSCBCSSCCCCEEEECBC-------------CCSCCCCCEEEEEEEE
T ss_pred CCCCCeEEEEEEEHHHhhhcCCCCccccEEccccccc---CCCcCcceECCCccEEEEEEEe
Confidence 889999999999999986443 11245554433211 11233 3458887776
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=142.81 Aligned_cols=99 Identities=33% Similarity=0.441 Sum_probs=86.7
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V 334 (477)
.....|.|.|+|++|++|+.++..|.+||||++++.+.. ...++|+++++|+||+|||+|.|.+... ....|.|+|
T Consensus 32 y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V 111 (166)
T 2cm5_A 32 YSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISV 111 (166)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred EECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEE
Confidence 455679999999999999999988999999999998642 3467999999999999999999998642 256899999
Q ss_pred EecCCCCCCCeeEEEEEECcccC
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLT 357 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~ 357 (477)
||+|.+++|++||++.++|.++.
T Consensus 112 ~d~d~~~~~~~iG~~~i~l~~~~ 134 (166)
T 2cm5_A 112 WDYDIGKSNDYIGGCQLGISAKG 134 (166)
T ss_dssp EECCSSSCCEEEEEEEEETTCCH
T ss_pred EECCCCCCCcEEEeEEEecccCC
Confidence 99999999999999999999863
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-16 Score=134.33 Aligned_cols=119 Identities=19% Similarity=0.313 Sum_probs=100.5
Q ss_pred ceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeC-CCCCCeeeeEEEEEeecC--CCCeEEEEEEecCC
Q 011813 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEP--ESQILQLQVFDWDK 339 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~-~t~nP~WnE~f~f~v~~~--~~~~L~v~V~d~d~ 339 (477)
.-.|+|+|.+|.+|+ |++|||+++.+.+.+ ++|++++ ++.||+|||.|.|++..+ .+..|.+.|||+++
T Consensus 20 ~msL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k---~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~ 91 (144)
T 3l9b_A 20 HMALIVHLKTVSELR-----GRADRIAKVTFRGQS---FYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSK 91 (144)
T ss_dssp CEEEEEEEEEEESCC-----SCEEEEEEEEETTEE---EECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECT
T ss_pred cEEEEEEEEEecCCC-----CCCCCeEEEEEeccc---eeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECcc
Confidence 456999999999998 578999999997544 5999998 699999999999998753 26789999999999
Q ss_pred CCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEec
Q 011813 340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (477)
Q Consensus 340 ~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~ 395 (477)
+++|++||++.++|+++..++....+..|... +.....++|.++++|.|.
T Consensus 92 v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~------n~~~~~a~I~l~l~Y~pp 141 (144)
T 3l9b_A 92 VFSNKLIGTFRMVLQKVVEENRVEVSDTLIDD------NNAIIKTSLSMEVRYQAA 141 (144)
T ss_dssp TSCCEEEEEEEEESHHHHHHSEEEEEEEEECT------TSCEEEEEEEEEEEEEET
T ss_pred ccCCCEEEEEEEEhHHhccCCeEEEeecccCC------CCCccccEEEEEEEecCC
Confidence 99999999999999999987777766665431 234456899999999994
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.68 E-value=7.8e-17 Score=141.85 Aligned_cols=97 Identities=29% Similarity=0.374 Sum_probs=79.4
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeecCC--CCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~--~~~L~v~V 334 (477)
.....+.|.|+|++|++|+..+..|.+||||++++.++ ....++|+++++|+||+|||+|.|.+.... ...|.|+|
T Consensus 25 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V 104 (153)
T 1w15_A 25 YQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLV 104 (153)
T ss_dssp EETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEE
T ss_pred EcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEE
Confidence 44567999999999999999998899999999999543 223569999999999999999999987542 46899999
Q ss_pred EecCCCCCCCeeEEEEEECcc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKL 355 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~ 355 (477)
||+|.+++|++||++.+++.+
T Consensus 105 ~d~d~~~~~~~lG~~~i~l~~ 125 (153)
T 1w15_A 105 LDSERGSRNEVIGRLVLGATA 125 (153)
T ss_dssp EECCTTSCCEEEEEEEESTTC
T ss_pred EeCCCCCCCcEEEEEEECCCC
Confidence 999999999999999999988
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.66 E-value=2.4e-16 Score=165.78 Aligned_cols=121 Identities=26% Similarity=0.417 Sum_probs=103.3
Q ss_pred cCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCC
Q 011813 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDK 339 (477)
Q Consensus 260 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~ 339 (477)
....|.|+|+|++|++|+++|..|.+||||++++++.. ++|+++++|+||.|||+|.|.+.......|+|+|||+|.
T Consensus 383 ~~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~---~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~ 459 (510)
T 3jzy_A 383 TSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQS---YTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQ 459 (510)
T ss_dssp ---CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEE---EECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCS
T ss_pred CCCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCee---ccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCC
Confidence 34679999999999999999999999999999997644 599999999999999999999987777889999999999
Q ss_pred CCCCCeeEEEEEECcccCCCCc----eEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 011813 340 VGGHDRLGMQLVPLKLLTPHET----KEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (477)
Q Consensus 340 ~~~d~~lG~~~v~L~~l~~~~~----~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (477)
+++|++||++.++|.++..+.. ...|+.+. +...|+|++.+++.
T Consensus 460 ~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~----------~~~~G~i~l~~~l~ 507 (510)
T 3jzy_A 460 FSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLH----------EVPTGEVWVRFDLQ 507 (510)
T ss_dssp SSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECB----------SSSSCEEEEEEEEE
T ss_pred CCCCCceEEEEEEHHHhccccCCCCceeeeecCC----------CCCCceEEEEEEEE
Confidence 9999999999999999876533 55677653 34679999888764
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.3e-15 Score=132.42 Aligned_cols=90 Identities=18% Similarity=0.276 Sum_probs=75.1
Q ss_pred cCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeC-CCCCCeeeeEEEEEeecCCCCeEEEEEEecC
Q 011813 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEPESQILQLQVFDWD 338 (477)
Q Consensus 260 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~-~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d 338 (477)
..+.+.|+|+|++|+++. ..|.+||||+++ . +. .+|++++ ++.||+|||+|.|.+.+. ...|.|+|||+|
T Consensus 10 ~g~~~~L~V~V~~A~~l~---~~g~~DPYV~v~-~-~~---~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d 80 (167)
T 2cjs_A 10 GGILSLLCVGVKKAKFDG---AQEKFNTYVTLK-V-QN---VESTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG 80 (167)
T ss_dssp CSCCCEEEEEEEEEECSS---CGGGCEEEEEEE-E-TT---EEEECCCEESSSCEEEEEEEEECCCT-TSEEEEEEEECC
T ss_pred CCceEEEEEEEEEEECCC---CCCCCCeEEEEE-e-cc---eEEEEecCCCCCCCCCCEEEEEeeCC-CCEEEEEEEECC
Confidence 345789999999999884 258899999999 2 22 3566654 699999999999999864 467999999999
Q ss_pred CCCCCCeeEEEEEECcccCCC
Q 011813 339 KVGGHDRLGMQLVPLKLLTPH 359 (477)
Q Consensus 339 ~~~~d~~lG~~~v~L~~l~~~ 359 (477)
+++|++||++.++|.++...
T Consensus 81 -~~~dd~iG~~~i~L~~l~~~ 100 (167)
T 2cjs_A 81 -LIWDTMVGTVWIPLRTIRQS 100 (167)
T ss_dssp -SSCCEEEEEEEEEGGGSCBC
T ss_pred -CCCCceEEEEEEEHHHhccc
Confidence 88999999999999998643
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-15 Score=162.74 Aligned_cols=110 Identities=27% Similarity=0.451 Sum_probs=99.1
Q ss_pred cCCceEEEEEEEEcccccc---ccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEe
Q 011813 260 KKPVGILHVKVVRASKLLK---KDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFD 336 (477)
Q Consensus 260 ~~~~G~L~V~v~~A~~L~~---~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d 336 (477)
..+.|.|+|+|++|++|+. +|..|.+||||++++++....+++|+++++|+||+|||+|.|.+.......|+|+|||
T Consensus 14 ~~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D 93 (749)
T 1cjy_A 14 HQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMD 93 (749)
T ss_dssp CCCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEE
T ss_pred CCCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEE
Confidence 3568999999999999998 8888999999999999765566799999999999999999999987667899999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 011813 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 337 ~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
+|.++ |++||++.++|.++..+.....|++|..
T Consensus 94 ~D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~ 126 (749)
T 1cjy_A 94 ANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQ 126 (749)
T ss_dssp CCSSS-CEEEEEECCBSTTSCTTCCCCEEEEETT
T ss_pred CCCCC-CceeEEEEEEHHHcCCCCceEEEEecCC
Confidence 99998 9999999999999988877788888743
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-14 Score=138.87 Aligned_cols=110 Identities=35% Similarity=0.486 Sum_probs=90.4
Q ss_pred CCceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeecCC--CCeEEEEEEe
Q 011813 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQVFD 336 (477)
Q Consensus 261 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~--~~~L~v~V~d 336 (477)
...|.|.|+|++|++|+.+|..|.+||||++++.+. ....++|+++++|.||+|||+|.|.+.... ...|.|+|||
T Consensus 147 p~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d 226 (284)
T 2r83_A 147 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLD 226 (284)
T ss_dssp TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEE
T ss_pred CcCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEe
Confidence 346899999999999999998899999999999642 234578999999999999999999986432 4579999999
Q ss_pred cCCCCCCCeeEEEEEECcccC------------CCCceEEEEeccc
Q 011813 337 WDKVGGHDRLGMQLVPLKLLT------------PHETKEFTLDLLK 370 (477)
Q Consensus 337 ~d~~~~d~~lG~~~v~L~~l~------------~~~~~~~~~~l~~ 370 (477)
+|.+++|++||++.+++..+. ++.....|+.|..
T Consensus 227 ~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~ 272 (284)
T 2r83_A 227 YDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 272 (284)
T ss_dssp CCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBC
T ss_pred CCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCC
Confidence 999999999999999998632 2344556666643
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.52 E-value=8.2e-14 Score=148.78 Aligned_cols=123 Identities=22% Similarity=0.378 Sum_probs=99.8
Q ss_pred CceEEEEEEEEccccccccc--cCCCCcEEEEEEcCc--ccCceeeeeeCCC-CCCeeeeEEEEEeecCCCCeEEEEEEe
Q 011813 262 PVGILHVKVVRASKLLKKDF--LGTSDPYVKLSLTGE--KLPWKKTTVKKKN-LNPEWNENFKLVVKEPESQILQLQVFD 336 (477)
Q Consensus 262 ~~G~L~V~v~~A~~L~~~d~--~g~~dpyv~v~l~~~--~~~~~kT~v~~~t-~nP~WnE~f~f~v~~~~~~~L~v~V~d 336 (477)
..+.|+|+|++|++|+..+. .+.+||||++.+.+. ...+++|++++++ .||+|||+|.|.+..+....|+|+|||
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D 574 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED 574 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence 57899999999999998873 689999999999653 2345699999987 999999999999986655789999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCC-ccceEEEEEEEEE
Q 011813 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDM-KQRGKIVVELTYV 393 (477)
Q Consensus 337 ~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~-~~~G~l~l~l~y~ 393 (477)
+|.+++|++||++.++|..+..+. .+++|... .+. -..|.|.+.++|.
T Consensus 575 ~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~------~g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 575 YDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSK------NGDQHPSATLFVKISIQ 623 (624)
T ss_dssp CCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECT------TSCEEEEEEEEEEEEEE
T ss_pred cCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCC------CcCCCCceEEEEEEEEE
Confidence 999999999999999999998753 35665431 111 2467888888874
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-14 Score=141.40 Aligned_cols=97 Identities=35% Similarity=0.539 Sum_probs=84.9
Q ss_pred CCceEEEEEEEEccccccccccCCCCcEEEEEEcC--cccCceeeeeeCCCCCCeeeeEEEEEeecCC--CCeEEEEEEe
Q 011813 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQVFD 336 (477)
Q Consensus 261 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~--~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~--~~~L~v~V~d 336 (477)
...|.|+|+|++|++|+.+|..|.+||||++++.+ ....+++|+++++|.||+|||+|.|.+.... ...|.|+|||
T Consensus 149 ~~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d 228 (296)
T 1dqv_A 149 PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVD 228 (296)
T ss_dssp TTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEE
T ss_pred cccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEe
Confidence 45699999999999999999899999999999973 3345679999999999999999999986432 4579999999
Q ss_pred cCCCCCCCeeEEEEEECcccC
Q 011813 337 WDKVGGHDRLGMQLVPLKLLT 357 (477)
Q Consensus 337 ~d~~~~d~~lG~~~v~L~~l~ 357 (477)
+|.+++|++||++.+++..+.
T Consensus 229 ~d~~~~~~~iG~~~i~l~~~~ 249 (296)
T 1dqv_A 229 YDCIGHNEVIGVCRVGPEAAD 249 (296)
T ss_dssp CCSSSCCEEEEECCCSSCTTC
T ss_pred CCCCCCCceEEEEEECCccCC
Confidence 999999999999999998764
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.1e-15 Score=152.55 Aligned_cols=127 Identities=20% Similarity=0.242 Sum_probs=21.9
Q ss_pred CCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCC---CCCeeeeEEEEEeecCCCCeEEEEEEec
Q 011813 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKN---LNPEWNENFKLVVKEPESQILQLQVFDW 337 (477)
Q Consensus 261 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t---~nP~WnE~f~f~v~~~~~~~L~v~V~d~ 337 (477)
...|.|+|+|++|++|+++| ||||++++++... .||+++++| .||+|||+|.|.+... ...|.++|||+
T Consensus 8 r~~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~--~kT~v~~kt~~glnP~WnE~F~f~~~~~-~~~L~v~V~d~ 79 (483)
T 3bxj_A 8 RVDNVLKLWIIEARELPPKK-----RYYCELCLDDMLY--ARTTSKPRSASGDTVFWGEHFEFNNLPA-VRALRLHLYRD 79 (483)
T ss_dssp EEEECC----------------------------------------------------CCEECC----------------
T ss_pred eeccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEE--eeeeEEeCCCCCCCCccccEEEEecCCC-ccEEEEEEEec
Confidence 34688999999999999876 9999999986533 589999999 9999999999986433 47899999994
Q ss_pred -C---CCCCCCeeEEEEEECcccCCCCceEEEEecccccCCC-----------------CCCCCccceEEEEEEEEEec
Q 011813 338 -D---KVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNIS-----------------DPKDMKQRGKIVVELTYVPF 395 (477)
Q Consensus 338 -d---~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~-----------------~~~~~~~~G~l~l~l~y~p~ 395 (477)
| ..++|++||++.+++.++..+...+.|++|....... ..++....|.|+++++|.+.
T Consensus 80 ~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~ 158 (483)
T 3bxj_A 80 SDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTM 158 (483)
T ss_dssp ---------------------------CCEECC--------------------------------------CEEEEEEC
T ss_pred CCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeeee
Confidence 4 3678999999999999999877788888884322100 00112356999999999874
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.29 E-value=4.2e-12 Score=137.79 Aligned_cols=108 Identities=34% Similarity=0.506 Sum_probs=92.6
Q ss_pred CceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeecCC-CCeEEEEEEecC
Q 011813 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWD 338 (477)
Q Consensus 262 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~-~~~L~v~V~d~d 338 (477)
..+.|.|++++|++|.++|..|.+||||++++.+. ...+++|+++++|+||.|||+|.|.+.... ...|.++|||+|
T Consensus 170 ~~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d 249 (674)
T 3pfq_A 170 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWD 249 (674)
T ss_dssp CSSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECC
T ss_pred ccceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeecc
Confidence 35889999999999999999999999999999543 234579999999999999999999987433 457999999999
Q ss_pred CCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 011813 339 KVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 339 ~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
..++|++||++.+++.++.... ...|+++..
T Consensus 250 ~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls 280 (674)
T 3pfq_A 250 LTSRNDFMGSLSFGISELQKAG-VDGWFKLLS 280 (674)
T ss_dssp SSSCCEECCBCCCBTTHHHHCC-EEEEEECBC
T ss_pred cccccccccccccchhhhccCC-cccceeecc
Confidence 9999999999999999987654 467777654
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=9.4e-11 Score=128.33 Aligned_cols=120 Identities=18% Similarity=0.282 Sum_probs=90.4
Q ss_pred ceEEEEEEEEccccccccccCCCCcEEEEEEcCc---ccCceeeeeeCC-CCCCeeee-EEEEE-eecCCCCeEEEEEEe
Q 011813 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE---KLPWKKTTVKKK-NLNPEWNE-NFKLV-VKEPESQILQLQVFD 336 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~---~~~~~kT~v~~~-t~nP~WnE-~f~f~-v~~~~~~~L~v~V~d 336 (477)
...|+|+|++|++|+.. .+||||++.+.+. ...+++|+++++ +.||+||| +|.|. +..+....|+|+|||
T Consensus 724 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D 799 (885)
T 3ohm_B 724 ANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFE 799 (885)
T ss_dssp CEEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred ceEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEc
Confidence 34799999999999853 6899999999752 122368998875 69999999 69998 765555689999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEecccC
Q 011813 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKED 398 (477)
Q Consensus 337 ~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~~ 398 (477)
+| |++||++.+||..|..+.. .++|... ....-..|.|.+.+.+.....+
T Consensus 800 ~d----ddfiG~~~lpL~~L~~GyR---~vpL~~~-----~g~~l~~atLfv~i~~~~~~~~ 849 (885)
T 3ohm_B 800 EG----GKFVGHRILPVSAIRSGYH---YVCLRNE-----ANQPLCLPALLIYTEASDYIPD 849 (885)
T ss_dssp TT----TEEEEEEEEETTTCCCEEE---EEEEECT-----TSCEEEEEEEEEEEEEEECCCG
T ss_pred CC----ccEEeeEEEEHHHcCCCce---EEEecCC-----CCCccCceEEEEEEEEEecCCc
Confidence 87 7899999999999987632 2444321 0112257899999998865443
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-10 Score=126.62 Aligned_cols=116 Identities=21% Similarity=0.298 Sum_probs=86.5
Q ss_pred CceEEEEEEEEccccccccccCCCCcEEEEEEcCc---ccCceeee-eeC-CCCCCeeee-EEEE-EeecCCCCeEEEEE
Q 011813 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE---KLPWKKTT-VKK-KNLNPEWNE-NFKL-VVKEPESQILQLQV 334 (477)
Q Consensus 262 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~---~~~~~kT~-v~~-~t~nP~WnE-~f~f-~v~~~~~~~L~v~V 334 (477)
..|.|.|+|++|++|+. +.+||||++.+.+. ...+++|+ +++ ++.||+||| +|.| .+..+.-..|+|+|
T Consensus 676 ~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V 751 (799)
T 2zkm_X 676 VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV 751 (799)
T ss_dssp TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEE
Confidence 36799999999999985 46899999999542 22346898 776 569999999 6999 78665556899999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (477)
||+| |++||++.+||..+..+. .+++|... ....-..+.|.+.+.+.
T Consensus 752 ~D~d----~d~iG~~~ipl~~L~~G~---r~v~L~~~-----~g~~~~~~~Lfv~i~~~ 798 (799)
T 2zkm_X 752 MEEG----NKFLGHRIIPINALNSGY---HHLCLHSE-----SNMPLTMPALFIFLEMK 798 (799)
T ss_dssp EETT----TEEEEEEEEEGGGBCCEE---EEEEEECT-----TCCEEEEEEEEEEEEEE
T ss_pred EEeC----CCccceEeeehhhcCCCc---EEEeccCC-----CCCCCCceEEEEEEEEE
Confidence 9996 789999999999998653 34444321 00112347777777663
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2.4e-10 Score=124.49 Aligned_cols=118 Identities=18% Similarity=0.318 Sum_probs=88.7
Q ss_pred ceEEEEEEEEccccccccccCCCCcEEEEEEcCccc----CceeeeeeCC-CCCCeeeeE-EEEE-eecCCCCeEEEEEE
Q 011813 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL----PWKKTTVKKK-NLNPEWNEN-FKLV-VKEPESQILQLQVF 335 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~----~~~kT~v~~~-t~nP~WnE~-f~f~-v~~~~~~~L~v~V~ 335 (477)
.+.|+|+|++|++|+.+ .+||||++.+.+... .+++|+++++ +.||+|||+ |.|. +..++-..|+|+||
T Consensus 649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~ 724 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVS 724 (816)
T ss_dssp CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEE
Confidence 47899999999999853 589999999975321 3468998875 699999998 9998 76555568999999
Q ss_pred ecCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEecc
Q 011813 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFK 396 (477)
Q Consensus 336 d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~ 396 (477)
|++ |++||++.+||+.+..+.. .++|... ....-..+.|.+.+.+.-..
T Consensus 725 D~d----ddfiG~~~ipL~~L~~GyR---~vpL~~~-----~g~~~~~atLfv~i~~~~~~ 773 (816)
T 3qr0_A 725 EEN----GKFIGHRVMPLDGIKPGYR---HVPLRNE-----SNRPLGLASVFAHIVAKDYV 773 (816)
T ss_dssp ETT----SCEEEEEEEESTTCCCEEE---EEEEECT-----TSCEEEEEEEEEEEEEEECC
T ss_pred ecC----CCeeeEEEEEHHHcCCcce---EEEEeCC-----CCCCCCceEEEEEEEEEecC
Confidence 985 7899999999999987632 3444321 01122347888888876543
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=2e-10 Score=99.83 Aligned_cols=67 Identities=24% Similarity=0.203 Sum_probs=57.9
Q ss_pred CCccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCCC----------CCCC
Q 011813 379 DMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----------NHNN 448 (477)
Q Consensus 379 ~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~~----------~~~D 448 (477)
.....|+|++++.|.| ..+.|.|+|++|+||+.. +.+|
T Consensus 8 ~~~~~G~l~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~d 55 (147)
T 2enp_A 8 SKYQLGMLHFSTQYDL--------------------------------LHNHLTVRVIEARDLPPPISHDGSRQDMAHSN 55 (147)
T ss_dssp SCCCCCEEEEEEEEET--------------------------------TTTEEEEEEEEEECCCCSCSSCCSSCTTCCCC
T ss_pred CCCcceEEEEEEEEcC--------------------------------CCCEEEEEEEEEeCCCCccccccccccCCCCC
Confidence 3567999999999987 578999999999999862 4799
Q ss_pred cEEEEEEcC---eEeeeeeeeeccCccceecC
Q 011813 449 PYAIILYKG---DKKRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 449 Pyvkv~l~~---~~~kTkv~~~t~~P~~~~~~ 477 (477)
|||++++.+ +++||+++++|+||.||+.|
T Consensus 56 pyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f 87 (147)
T 2enp_A 56 PYVKICLLPDQKNSKQTGVKRKTQKPVFEERY 87 (147)
T ss_dssp CEEEEEEETCCSSCEECCCCCSCSSCCCCBCC
T ss_pred cEEEEEEEeCCCcceEeecccCCCCCeEeeeE
Confidence 999999973 56699999999999999643
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-10 Score=98.67 Aligned_cols=63 Identities=25% Similarity=0.375 Sum_probs=55.9
Q ss_pred cceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEE---
Q 011813 382 QRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILY--- 455 (477)
Q Consensus 382 ~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l--- 455 (477)
..|+|++++.|.+ ..+.|.|+|.+|+||+. .+.+||||++++
T Consensus 3 ~~G~l~~~l~y~~--------------------------------~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~ 50 (129)
T 2bwq_A 3 LSGQLSIKLWFDK--------------------------------VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPD 50 (129)
T ss_dssp CCCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESS
T ss_pred eeEEEEEEEEEcc--------------------------------CCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecC
Confidence 4799999999987 57899999999999986 467999999999
Q ss_pred --cCeEeeeeeeeeccCccceec
Q 011813 456 --KGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 456 --~~~~~kTkv~~~t~~P~~~~~ 476 (477)
+.+++||+++++|+||.||..
T Consensus 51 ~~~~~~~kT~v~~~t~nP~wne~ 73 (129)
T 2bwq_A 51 RSDKNKRRTKTVKKTLEPKWNQT 73 (129)
T ss_dssp CSGGGEEECCCCSSBSSCEEEEE
T ss_pred CCCCcceecccccCCCCCccccE
Confidence 456779999999999999954
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.7e-10 Score=99.56 Aligned_cols=65 Identities=17% Similarity=0.156 Sum_probs=56.8
Q ss_pred CccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc
Q 011813 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK 456 (477)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~ 456 (477)
....|+|++++.|.+ ..+.|.|+|++|+||+. .+.+||||+++++
T Consensus 12 ~~~~G~l~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~ 59 (142)
T 2chd_A 12 ATTLGALEFSLLYDQ--------------------------------DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLL 59 (142)
T ss_dssp --CCCEEEEEEEEEG--------------------------------GGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEE
T ss_pred CCccceEEEEEEEeC--------------------------------CCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEE
Confidence 567899999999987 67899999999999986 4689999999997
Q ss_pred C-----eEeeeeeeeeccCccceec
Q 011813 457 G-----DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 457 ~-----~~~kTkv~~~t~~P~~~~~ 476 (477)
+ .++||+++++|+||.||..
T Consensus 60 ~~~~~~~~~kT~v~~~t~nP~wne~ 84 (142)
T 2chd_A 60 PGASKSNKLRTKTLRNTRNPVWNET 84 (142)
T ss_dssp SCCSGGGEEECCCCCSCSSCEEEEE
T ss_pred cCCCCcceeeCCcCCCCCCCcCcCE
Confidence 6 6779999999999999954
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-10 Score=102.38 Aligned_cols=65 Identities=11% Similarity=0.057 Sum_probs=56.1
Q ss_pred CccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc
Q 011813 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK 456 (477)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~ 456 (477)
....|+|++++.|.+ ..+.|.|.|++|+||+. ++.+||||++++.
T Consensus 26 ~~~~G~l~~sl~y~~--------------------------------~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~ 73 (155)
T 2z0u_A 26 AVGATRIQIALKYDE--------------------------------KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVL 73 (155)
T ss_dssp --CCEEEEEEEEEET--------------------------------TTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEE
T ss_pred cCCcEEEEEEEEEcC--------------------------------CCCEEEEEEEEccCcCCcccCCCCCEEEEEEEe
Confidence 456899999999987 57899999999999986 5789999999997
Q ss_pred C---e---EeeeeeeeeccCccceec
Q 011813 457 G---D---KKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 457 ~---~---~~kTkv~~~t~~P~~~~~ 476 (477)
+ . ++||+++++|+||.||..
T Consensus 74 ~~~~~~~~~~kT~v~~~tlnP~wnE~ 99 (155)
T 2z0u_A 74 PCSESTTCLFRTRPLDASDTLVFNEV 99 (155)
T ss_dssp SCSCHHHHEEECCCEECCSSEEEEEE
T ss_pred cCCCCCccceeCCcCCCCCCCccccE
Confidence 5 2 679999999999999953
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.9e-10 Score=101.38 Aligned_cols=66 Identities=29% Similarity=0.430 Sum_probs=57.2
Q ss_pred CCccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEE
Q 011813 379 DMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILY 455 (477)
Q Consensus 379 ~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l 455 (477)
.....|+|+++++|.| ..+.|.|+|++|+||+. .+.+||||++++
T Consensus 7 ~~~~~G~l~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l 54 (159)
T 1tjx_A 7 ILEKLGDICFSLRYVP--------------------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHL 54 (159)
T ss_dssp GGGCCCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEE
T ss_pred CcCcCCeEEEEEEEcC--------------------------------CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEE
Confidence 3557899999999997 57899999999999986 468999999999
Q ss_pred cC-----eEeeeeeeeeccCccceec
Q 011813 456 KG-----DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 456 ~~-----~~~kTkv~~~t~~P~~~~~ 476 (477)
++ +++||+++++|+||.||..
T Consensus 55 ~~~~~~~~~~kT~v~~~t~nP~wne~ 80 (159)
T 1tjx_A 55 MQNGKRLKKKKTTIKKNTLNPYYNES 80 (159)
T ss_dssp EETTEEEEEEECCCCCSCSSCEEEEE
T ss_pred EeCCceeceeeCceecCCCCCcccce
Confidence 63 3569999999999999954
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-10 Score=100.64 Aligned_cols=66 Identities=24% Similarity=0.356 Sum_probs=57.6
Q ss_pred CccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEE-
Q 011813 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILY- 455 (477)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l- 455 (477)
+...|+|++++.|.+ ..+.|.|+|++|+||+. .+.+||||++++
T Consensus 4 ~~~~G~i~~~l~y~~--------------------------------~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~ 51 (141)
T 1v27_A 4 GSSGGQLSIKLWFDK--------------------------------VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFL 51 (141)
T ss_dssp CCCCCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCSSSCCCCEEEECCCS
T ss_pred CCcccEEEEEEEEeC--------------------------------CCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEe
Confidence 567899999999987 56899999999999986 467999999999
Q ss_pred ----cCeEeeeeeeeeccCccceecC
Q 011813 456 ----KGDKKRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 456 ----~~~~~kTkv~~~t~~P~~~~~~ 477 (477)
+.+++||+++++|+||.||..+
T Consensus 52 ~~~~~~~~~kT~~~~~t~nP~wne~f 77 (141)
T 1v27_A 52 PDRSDKNKRRTKTVKKTLEPKWNQTF 77 (141)
T ss_dssp SCCSSSSCCBCCCCSSCSSCCCCCCC
T ss_pred cCCCCCcceeCccccCCCCCccccEE
Confidence 3566799999999999999653
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.6e-10 Score=101.28 Aligned_cols=65 Identities=23% Similarity=0.371 Sum_probs=57.8
Q ss_pred CccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc
Q 011813 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK 456 (477)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~ 456 (477)
....|+|++++.|.+ ..+.|.|+|++|+||+. .+.+||||+++++
T Consensus 20 ~~~~G~l~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~ 67 (166)
T 2cm5_A 20 IEERGKILVSLMYST--------------------------------QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLK 67 (166)
T ss_dssp CCCCCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEE
T ss_pred cCccceEEEEEEEEC--------------------------------CCCEEEEEEEEeECCCCccCCCCCCcEEEEEEE
Confidence 567899999999987 57899999999999986 4689999999998
Q ss_pred C-----eEeeeeeeeeccCccceec
Q 011813 457 G-----DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 457 ~-----~~~kTkv~~~t~~P~~~~~ 476 (477)
+ .++||+++++|+||.||..
T Consensus 68 ~~~~~~~~~kT~v~~~t~nP~wne~ 92 (166)
T 2cm5_A 68 PDMGKKAKHKTQIKKKTLNPEFNEE 92 (166)
T ss_dssp TC---CCEEECCCCCSCSSCEEEEE
T ss_pred CCCCccceEeCCcccCCCCCcccce
Confidence 6 5669999999999999954
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.5e-10 Score=98.57 Aligned_cols=65 Identities=17% Similarity=0.268 Sum_probs=56.5
Q ss_pred CCccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEE
Q 011813 379 DMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILY 455 (477)
Q Consensus 379 ~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l 455 (477)
.....|+|++++.|.+ ..+.|.|+|++|+||+. .+ +||||++++
T Consensus 6 ~~~~~G~l~~~l~y~~--------------------------------~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l 52 (142)
T 2dmg_A 6 SGSPLGQIQLTIRHSS--------------------------------QRNKLIVVVHACRNLIAFSEDG-SDPYVRMYL 52 (142)
T ss_dssp CSCSSCEEEEEEEEET--------------------------------TTTEEEEEEEEEECCCCSSTTC-CCEEEEEEE
T ss_pred CCCCcceEEEEEEEeC--------------------------------CCCEEEEEEEEeECCCCCCCCC-CCeeEEEEE
Confidence 3567899999999987 57899999999999986 45 999999999
Q ss_pred cC-----eEeeeeeeeeccCccceec
Q 011813 456 KG-----DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 456 ~~-----~~~kTkv~~~t~~P~~~~~ 476 (477)
.+ .++||+++++|+||.||..
T Consensus 53 ~~~~~~~~~~kT~v~~~t~nP~wne~ 78 (142)
T 2dmg_A 53 LPDKRRSGRRKTHVSKKTLNPVFDQS 78 (142)
T ss_dssp ESCCCSSSCEECCCCCSCSSCEEEEE
T ss_pred EcCCCCCCcccCCccCCCCCCCcCce
Confidence 43 5669999999999999954
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.06 E-value=2.3e-10 Score=98.37 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=57.6
Q ss_pred CCccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC----CCCCCcEEEEE
Q 011813 379 DMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG----ENHNNPYAIIL 454 (477)
Q Consensus 379 ~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~----~~~~DPyvkv~ 454 (477)
+....|+|++++.|.+ ..+.|.|+|++|+||+. .+.+||||+++
T Consensus 4 ~~~~~G~l~~~l~y~~--------------------------------~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~ 51 (138)
T 1ugk_A 4 GSSGLGTLFFSLEYNF--------------------------------ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMT 51 (138)
T ss_dssp CCCCCCEEEEEEEEEG--------------------------------GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEE
T ss_pred CCCccEEEEEEEEEEC--------------------------------CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEE
Confidence 3567899999999987 57899999999999986 26799999999
Q ss_pred EcC---eEeeeeeeeeccCccceec
Q 011813 455 YKG---DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 455 l~~---~~~kTkv~~~t~~P~~~~~ 476 (477)
+.+ +++||+++++|+||.||..
T Consensus 52 ~~~~~~~~~kT~v~~~t~nP~wne~ 76 (138)
T 1ugk_A 52 ILPEKKHKVKTRVLRKTLDPAFDET 76 (138)
T ss_dssp EETTTCSEEECCCCSSCSSCEEEEE
T ss_pred EecCCCceEecCcCcCCCCCcEeeE
Confidence 964 6779999999999999954
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.4e-09 Score=88.06 Aligned_cols=113 Identities=19% Similarity=0.318 Sum_probs=85.7
Q ss_pred ceEEEEEEEEccccccccccCCCCcEEEEEEcCcccC-ceee-eeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCC
Q 011813 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLP-WKKT-TVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV 340 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~-~~kT-~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~ 340 (477)
.+.|+|.+.++.--+-.......||||.+.+...... ..+| ..++.|..|+|||+|.-.+.+ ...|.+.|++...
T Consensus 5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~- 81 (126)
T 1yrk_A 5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAAE- 81 (126)
T ss_dssp CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT--TCEEEEEEEEETT-
T ss_pred CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC--CEEEEEEEEcCCC-
Confidence 4678888866653221122346899999999743321 2355 777899999999999999875 5789999997653
Q ss_pred CCCCeeEEEEEECcccC-----CCCceEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 011813 341 GGHDRLGMQLVPLKLLT-----PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (477)
Q Consensus 341 ~~d~~lG~~~v~L~~l~-----~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (477)
+++..|.+++.+|. .+...+.|++| ++.|+|++.+.|+
T Consensus 82 ---~fvAn~tV~~edL~~~c~~~~g~~e~WvdL------------eP~Gkl~~~i~~~ 124 (126)
T 1yrk_A 82 ---EPVSEVTVGVSVLAERCKKNNGKAEFWLDL------------QPQAKVLMSVQYF 124 (126)
T ss_dssp ---EEEEEEEEEHHHHHHHHHTTTTEEEEEEEC------------BSSCEEEEEEEEE
T ss_pred ---CeeeEEEEEHHHHHhhhccCCCceEEEEec------------ccCcEEEEEEEEe
Confidence 89999999999997 44566899987 3589999999997
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.6e-10 Score=98.36 Aligned_cols=65 Identities=20% Similarity=0.250 Sum_probs=56.7
Q ss_pred CccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc
Q 011813 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK 456 (477)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~ 456 (477)
....|+|++++.|.+ ..+.|.|+|++|+||+. .+.+||||++++.
T Consensus 9 ~~~~G~l~~~l~y~~--------------------------------~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~ 56 (141)
T 2d8k_A 9 RENLGRIQFSVGYNF--------------------------------QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLL 56 (141)
T ss_dssp CCCCCEEEEEEEECS--------------------------------SSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEE
T ss_pred CceeeEEEEEEEEeC--------------------------------CCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEE
Confidence 456899999999987 57899999999999987 4679999999995
Q ss_pred ---CeEeeeeeeeeccCccceec
Q 011813 457 ---GDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 457 ---~~~~kTkv~~~t~~P~~~~~ 476 (477)
.+++||+++++|+||.||+.
T Consensus 57 ~~~~~~~kT~v~~~t~nP~wne~ 79 (141)
T 2d8k_A 57 PDKKHKLETKVKRKNLNPHWNET 79 (141)
T ss_dssp SCCSSEEECCCCTTCSSCCCCEE
T ss_pred CCCCccEeCceEcCCCCCccccE
Confidence 35669999999999999964
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.9e-10 Score=97.42 Aligned_cols=62 Identities=23% Similarity=0.370 Sum_probs=55.0
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~-- 457 (477)
+|+|++++.|.+ ..+.|.|+|.+|+||+. .+.+||||++++.+
T Consensus 2 ~G~l~~sl~y~~--------------------------------~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~ 49 (138)
T 3n5a_A 2 RGELLLSLCYNP--------------------------------SANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKD 49 (138)
T ss_dssp CCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETT
T ss_pred CcEEEEEEEEcC--------------------------------CCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCC
Confidence 699999999987 67899999999999987 46799999999974
Q ss_pred ---eEeeeeeeeeccCccceec
Q 011813 458 ---DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 ---~~~kTkv~~~t~~P~~~~~ 476 (477)
.++||+++++|+||.||+.
T Consensus 50 ~~~~~~kT~~~~~t~nP~wne~ 71 (138)
T 3n5a_A 50 KRVEKKKTVTKKRNLNPIFNES 71 (138)
T ss_dssp EEEEEEECCCCSSCSSCEEEEE
T ss_pred CccceEeCccccCCCCCcCcce
Confidence 3569999999999999954
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.02 E-value=4.9e-10 Score=96.33 Aligned_cols=65 Identities=18% Similarity=0.028 Sum_probs=56.2
Q ss_pred CccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCCCCCCCcEEEEEEc---
Q 011813 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYK--- 456 (477)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~~~~~DPyvkv~l~--- 456 (477)
....|+|++++.|.+ ..+.|.|+|++|++.+.++.+||||++++.
T Consensus 9 ~~~~G~l~~sl~y~~--------------------------------~~~~L~V~v~~a~~~d~~g~sDPyv~v~l~~~~ 56 (138)
T 1wfm_A 9 WNQAPKLHYCLDYDC--------------------------------QKAELFVTRLEAVTSNHDGGCDCYVQGSVANRT 56 (138)
T ss_dssp CSSCCEEEEEEEEET--------------------------------TTTEEEEEEEEEECCCCSSCCCEEEEEEEEETT
T ss_pred CCcceEEEEEEEEeC--------------------------------CCCEEEEEEEEEEcCCCCCCcceEEEEEEEcCC
Confidence 457899999999986 578999999999987778899999999994
Q ss_pred C-eEeeeeeeeeccCccceec
Q 011813 457 G-DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 457 ~-~~~kTkv~~~t~~P~~~~~ 476 (477)
+ .++||+++++|+||.||+.
T Consensus 57 ~~~~~kT~v~~~tlnP~wnE~ 77 (138)
T 1wfm_A 57 GSVEAQTALKKRQLHTTWEEG 77 (138)
T ss_dssp EEEEEECCCCCCCSSEECSSC
T ss_pred CcccEecccCcCCCCCcCCce
Confidence 2 2459999999999999954
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.4e-10 Score=98.49 Aligned_cols=65 Identities=20% Similarity=0.265 Sum_probs=57.1
Q ss_pred CccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC----CCCCCcEEEEEE
Q 011813 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG----ENHNNPYAIILY 455 (477)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~----~~~~DPyvkv~l 455 (477)
...+|+|++++.|.+ ..+.|.|+|++|+||+. .+.+||||++++
T Consensus 6 ~~~~G~l~~sl~y~~--------------------------------~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l 53 (148)
T 3fdw_A 6 IFVTGRIAFSLKYEQ--------------------------------QTQSLVVHVKECHQLAYADEAKKRSNPYVKTYL 53 (148)
T ss_dssp CCCCCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEE
T ss_pred CccceEEEEEEEEeC--------------------------------CCCEEEEEEEEecCCCCcccCCCCCCeEEEEEE
Confidence 457899999999987 57899999999999985 467999999999
Q ss_pred c-----CeEeeeeeeeeccCccceec
Q 011813 456 K-----GDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 456 ~-----~~~~kTkv~~~t~~P~~~~~ 476 (477)
. .+++||+++++|+||.||..
T Consensus 54 ~~~~~~~~~~kT~v~~~t~nP~wne~ 79 (148)
T 3fdw_A 54 LPDKSRQGKRKTSIKRDTVNPLYDET 79 (148)
T ss_dssp ETCCSGGGEEECCCCSSCSSCEEEEE
T ss_pred EcCCcccCccccccCCCCCCCcEeeE
Confidence 7 34679999999999999964
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.01 E-value=2.6e-10 Score=99.90 Aligned_cols=66 Identities=12% Similarity=0.069 Sum_probs=55.4
Q ss_pred CCccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC--CCCCCcEEEEEEc
Q 011813 379 DMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG--ENHNNPYAIILYK 456 (477)
Q Consensus 379 ~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~--~~~~DPyvkv~l~ 456 (477)
.....|++.++++|.+ ..+.|.|+|.+|+||+. .+.+||||++++.
T Consensus 9 ~~~~~G~~~lsL~y~~--------------------------------~~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~ 56 (153)
T 3fbk_A 9 SHKVQGAGQLRLSIDA--------------------------------QDRVLLLHIIEGKGLISKQPGTCDPYVKISLI 56 (153)
T ss_dssp ----CCCCEEEEEEEE--------------------------------SSSEEEEEEEEEESCCCCSSSCCCEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEC--------------------------------CCCEEEEEEEEeeCCCCCCCCCCCEEEEEEEE
Confidence 3678899999999998 68999999999999987 4689999999993
Q ss_pred -----CeEeeeeeeeeccCccceec
Q 011813 457 -----GDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 457 -----~~~~kTkv~~~t~~P~~~~~ 476 (477)
.+++||+++++|+||.||..
T Consensus 57 ~~~~~~~~~kT~v~~~t~nP~wne~ 81 (153)
T 3fbk_A 57 PEDSRLRHQKTQTVPDCRDPAFHEH 81 (153)
T ss_dssp SCSCCTTCEECCCCTTCSSCEEEEE
T ss_pred cCCCCccEEeccccCCCCCCccccE
Confidence 35569999999999999954
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.01 E-value=3.8e-10 Score=98.72 Aligned_cols=65 Identities=23% Similarity=0.241 Sum_probs=56.4
Q ss_pred CccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc
Q 011813 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK 456 (477)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~ 456 (477)
....|+|++++.|.+ ..+.|.|+|++|+||+. .+.+||||++++.
T Consensus 25 ~~~~G~l~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~ 72 (152)
T 1rsy_A 25 EEKLGKLQYSLDYDF--------------------------------QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLL 72 (152)
T ss_dssp -CCCCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEE
T ss_pred CCCceEEEEEEEEeC--------------------------------CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEE
Confidence 456899999999987 57899999999999986 4689999999994
Q ss_pred ---CeEeeeeeeeeccCccceec
Q 011813 457 ---GDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 457 ---~~~~kTkv~~~t~~P~~~~~ 476 (477)
.+++||+++++|+||.||..
T Consensus 73 ~~~~~~~kT~v~~~t~nP~wne~ 95 (152)
T 1rsy_A 73 PDKKKKFETKVHRKTLNPVFNEQ 95 (152)
T ss_dssp TTCCSCEECCCCTTCSSCEEEEE
T ss_pred cCCCceEeccccCCCCCCcCccc
Confidence 45669999999999999954
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.00 E-value=4.6e-10 Score=98.18 Aligned_cols=65 Identities=23% Similarity=0.310 Sum_probs=52.9
Q ss_pred CccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc
Q 011813 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK 456 (477)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~ 456 (477)
....|+|++++.|.| ..+.|.|+|++|+||+. .+.+||||++++.
T Consensus 13 ~~~~G~l~~~l~y~~--------------------------------~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~ 60 (153)
T 1w15_A 13 PSGRGELLVSLCYQS--------------------------------TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLY 60 (153)
T ss_dssp ---CCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCC------CCCEEEEEEEE
T ss_pred CccccEEEEEEEEcC--------------------------------CCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEE
Confidence 457899999999997 57899999999999986 4679999999994
Q ss_pred --Ce---EeeeeeeeeccCccceec
Q 011813 457 --GD---KKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 457 --~~---~~kTkv~~~t~~P~~~~~ 476 (477)
++ ++||+++++|+||.||+.
T Consensus 61 ~~~~~~~~~kT~v~~~t~nP~wne~ 85 (153)
T 1w15_A 61 HAKKRISKKKTHVKKCTPNAVFNEL 85 (153)
T ss_dssp ETTEEEEEEECCCCCSCSSEEEEEE
T ss_pred eCCeEeceEecCcccCCCCCeecce
Confidence 33 559999999999999954
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=5.3e-10 Score=96.62 Aligned_cols=65 Identities=25% Similarity=0.287 Sum_probs=57.0
Q ss_pred CccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEE-
Q 011813 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILY- 455 (477)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l- 455 (477)
....|+|++++.|.+ ..+.|.|+|++|+||+. .+.+||||++++
T Consensus 17 ~~~~G~l~~~l~y~~--------------------------------~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~ 64 (143)
T 3f04_A 17 VEKLGKLQYSLDYDF--------------------------------QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLL 64 (143)
T ss_dssp CCCCCEEEEEEEEET--------------------------------TTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEE
T ss_pred ccCeEEEEEEEEEeC--------------------------------CCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEE
Confidence 456899999999987 67899999999999987 468999999999
Q ss_pred --cCeEeeeeeeeeccCccceec
Q 011813 456 --KGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 456 --~~~~~kTkv~~~t~~P~~~~~ 476 (477)
+.+++||+++++|+||.||..
T Consensus 65 ~~~~~~~kT~v~~~t~nP~wne~ 87 (143)
T 3f04_A 65 PDKKKKFETKVHRKTLNPVFNEQ 87 (143)
T ss_dssp SCCSCCEECCCCCSCSSCEEEEE
T ss_pred CCCCccEECccCcCCCCCcCcCe
Confidence 445679999999999999954
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=3e-09 Score=88.55 Aligned_cols=115 Identities=17% Similarity=0.245 Sum_probs=87.7
Q ss_pred CceEEEEEEEEcccccccc-ccCCCCcEEEEEEcCccc-Cceee-eeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecC
Q 011813 262 PVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKL-PWKKT-TVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWD 338 (477)
Q Consensus 262 ~~G~L~V~v~~A~~L~~~d-~~g~~dpyv~v~l~~~~~-~~~kT-~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d 338 (477)
..+.|+|.+.++.--+-.. .....||||.+.+..... ...+| ..++.|..|+|||+|.-.+.+ ...|.|.|++..
T Consensus 8 m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a 85 (138)
T 2enj_A 8 MSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK--GRVMQIIVKGKN 85 (138)
T ss_dssp CCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS--SCEEEEEEECSS
T ss_pred cCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC--CeEEEEEEEcCC
Confidence 3567888887766433221 123589999999975422 23567 777889999999999988875 578999999654
Q ss_pred CCCCCCeeEEEEEECcccC-----CCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 339 KVGGHDRLGMQLVPLKLLT-----PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 339 ~~~~d~~lG~~~v~L~~l~-----~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
. +++..|.+++.+|. .+...+.|++| ++.|+|++.+.|+-
T Consensus 86 ~----~fVAn~tV~~edL~~~ck~~~g~~e~WvdL------------eP~Gkl~v~i~~~~ 130 (138)
T 2enj_A 86 V----DLISETTVELYSLAERCRKNNGKTEIWLEL------------KPQGRMLMNARYFL 130 (138)
T ss_dssp C----SCCEEEEEESHHHHHHHHHTTTCEEEEEEC------------BSSCEEEEEEEECC
T ss_pred C----CeeeEEEEEHHHHHhhhccCCCceEEEEec------------ccCcEEEEEEEEEE
Confidence 3 89999999999998 45567899987 35899999999973
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=98.87 E-value=8.7e-10 Score=95.09 Aligned_cols=63 Identities=21% Similarity=0.281 Sum_probs=54.5
Q ss_pred CccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc
Q 011813 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK 456 (477)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~ 456 (477)
....|+|++++.|. .|.|.|+|++|+||+. .+.+||||+++++
T Consensus 3 ~~~~G~i~~~l~y~----------------------------------~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~ 48 (142)
T 1rh8_A 3 HPITGEIQLQINYD----------------------------------LGNLIIHILQARNLVPRDNNGYSDPFVKVYLL 48 (142)
T ss_dssp CCCCCEEEEEEEEE----------------------------------TTEEEEEEEEEESCCCCSSSSCSCCEEEEEET
T ss_pred CCcceEEEEEEEEc----------------------------------CCEEEEEEEEecCCCCCCCCCCCCceEEEEEe
Confidence 45689999999995 3689999999999986 4689999999998
Q ss_pred Ce--------------EeeeeeeeeccCccceec
Q 011813 457 GD--------------KKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 457 ~~--------------~~kTkv~~~t~~P~~~~~ 476 (477)
+. +.||+++++|+||.||..
T Consensus 49 ~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~ 82 (142)
T 1rh8_A 49 PGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQT 82 (142)
T ss_dssp TSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEE
T ss_pred cCCCcccccccccccceeeccccCCCCCCCCCCE
Confidence 63 459999999999999964
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=98.84 E-value=4e-09 Score=91.74 Aligned_cols=63 Identities=24% Similarity=0.333 Sum_probs=53.4
Q ss_pred CccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc
Q 011813 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK 456 (477)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~ 456 (477)
....|+|++.+.|. .+.|.|+|++|+||+. .+.+||||++++.
T Consensus 16 ~~~~G~l~~~l~~~----------------------------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~ 61 (149)
T 1a25_A 16 MERRGRIYIQAHID----------------------------------REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLI 61 (149)
T ss_dssp -CTTCEEEEEEEES----------------------------------SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEE
T ss_pred CCcceEEEEEEEec----------------------------------CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEE
Confidence 44679999999873 3579999999999986 4679999999997
Q ss_pred C-----eEeeeeeeeeccCccceec
Q 011813 457 G-----DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 457 ~-----~~~kTkv~~~t~~P~~~~~ 476 (477)
+ .++||+++++|+||.||..
T Consensus 62 ~~~~~~~~~kT~v~~~t~nP~wne~ 86 (149)
T 1a25_A 62 PDPKSESKQKTKTIKCSLNPEWNET 86 (149)
T ss_dssp SCTTCSSCEECCCCSSCSSCEEEEE
T ss_pred CCCCCcceEecceeCCCCCCcCCcE
Confidence 3 5669999999999999954
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.78 E-value=6.4e-09 Score=92.77 Aligned_cols=63 Identities=22% Similarity=0.281 Sum_probs=52.5
Q ss_pred CccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC----CCCCCcEEEEEE
Q 011813 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG----ENHNNPYAIILY 455 (477)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~----~~~~DPyvkv~l 455 (477)
....|+|++.+.| . .+.|.|+|++|+||+. .+.+||||++++
T Consensus 15 ~~~~G~l~~~l~y-~---------------------------------~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l 60 (171)
T 2q3x_A 15 TPAMGDIQIGMED-K---------------------------------KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYL 60 (171)
T ss_dssp --CCCEEEEEEEE-E---------------------------------TTEEEEEEEEEESCCCCC---CCCEEEEEEEE
T ss_pred CCCccEEEEEEEE-C---------------------------------CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEE
Confidence 4567999999999 2 4689999999999985 368999999998
Q ss_pred cC-----eEeeeeeeeeccCccceec
Q 011813 456 KG-----DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 456 ~~-----~~~kTkv~~~t~~P~~~~~ 476 (477)
.+ +++||+++++|+||.||+.
T Consensus 61 ~~~~~~~~~~kT~v~~~t~nP~wne~ 86 (171)
T 2q3x_A 61 LENGACIAKKKTRIARKTLDPLYQQS 86 (171)
T ss_dssp EETTEEEEEEECCCCCSCSSCEEEEE
T ss_pred ECCCccccceeCccCCCCCCCCCCcE
Confidence 64 2669999999999999964
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=7e-09 Score=88.31 Aligned_cols=50 Identities=20% Similarity=0.361 Sum_probs=46.4
Q ss_pred cceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
..|.|.|+|++|+||+. .+.+||||++++++++.||+++++|+||.||..
T Consensus 11 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~ 63 (133)
T 2ep6_A 11 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKV 63 (133)
T ss_dssp CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEE
T ss_pred CceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccE
Confidence 78999999999999986 468999999999999999999999999999964
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=9.4e-09 Score=90.09 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=45.5
Q ss_pred CcceEEEEEEeeeecCCCC-------------CCCCcEEEEEEcCeEe-eeeeeeeccCccceecC
Q 011813 426 SGAGLLSVLVQGAEDVEGE-------------NHNNPYAIILYKGDKK-RTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 426 ~~~g~L~V~V~~A~~L~~~-------------~~~DPyvkv~l~~~~~-kTkv~~~t~~P~~~~~~ 477 (477)
...|.|+|+|.+|+||+.. +.+||||++.+++++. ||+++++|+||.||+.|
T Consensus 26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F 91 (157)
T 2fk9_A 26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEF 91 (157)
T ss_dssp CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEE
T ss_pred cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEE
Confidence 3689999999999999852 4699999999998774 99999999999999653
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-08 Score=87.37 Aligned_cols=50 Identities=26% Similarity=0.307 Sum_probs=43.8
Q ss_pred cceEEEEEEeeeecCCC--CCCCCcEEEEEE-----cCeEeeeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEG--ENHNNPYAIILY-----KGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~--~~~~DPyvkv~l-----~~~~~kTkv~~~t~~P~~~~~ 476 (477)
..+.|.|+|.+|+||+. ++.+||||++++ +..++||+++++|+||.||+.
T Consensus 18 ~~~~L~V~V~~a~~L~~~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~ 74 (134)
T 2b3r_A 18 RNGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEM 74 (134)
T ss_dssp ETTEEEEEEEEEECCCCTTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEE
T ss_pred cCCEEEEEEEEeeCCCCCCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccE
Confidence 46899999999999986 468999999999 446679999999999999954
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-08 Score=88.30 Aligned_cols=50 Identities=22% Similarity=0.291 Sum_probs=46.3
Q ss_pred cceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
..|.|.|+|++|+||+. .+.+||||++++++++.||+++++|+||.||..
T Consensus 15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~ 67 (148)
T 3kwu_A 15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEEN 67 (148)
T ss_dssp CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEE
T ss_pred cccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccE
Confidence 67999999999999987 468999999999999999999999999999954
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=8.2e-09 Score=86.90 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=44.6
Q ss_pred cceEEEEEEeeeecCCC------CCCCCcEEEEEEcC---eEeeeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEG------ENHNNPYAIILYKG---DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~------~~~~DPyvkv~l~~---~~~kTkv~~~t~~P~~~~~ 476 (477)
++|.|.|+|++|+||+. .+.+||||++++++ +++||+++++|+||.||..
T Consensus 1 S~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~ 59 (126)
T 1rlw_A 1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNET 59 (126)
T ss_dssp CCEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEE
T ss_pred CCcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccce
Confidence 36899999999999996 27899999999986 6779999999999999954
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-08 Score=87.51 Aligned_cols=50 Identities=24% Similarity=0.402 Sum_probs=46.1
Q ss_pred cceEEEEEEeeeecCCCC--CCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEGE--NHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~~--~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
..|.|.|+|++|+||+.. +.+||||+++++++++||+++++|+||.||..
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~ 56 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEI 56 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSSSCCCEEEEEECSSCEEECCCCCSCSSCEEEEE
T ss_pred CCcEEEEEEEEeeCCCCCCCCCCCeEEEEEECCEeEEeeeecCCCCCccCcE
Confidence 678999999999999863 58999999999999999999999999999965
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=98.62 E-value=2.4e-08 Score=85.29 Aligned_cols=50 Identities=18% Similarity=0.326 Sum_probs=46.0
Q ss_pred cceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeee-eccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSF-LSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~-~t~~P~~~~~ 476 (477)
..|.|.|+|++|+||+. .+.+||||++++++++.||++++ +|+||.||..
T Consensus 8 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~ 61 (136)
T 1wfj_A 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNET 61 (136)
T ss_dssp CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEE
T ss_pred CcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcE
Confidence 68999999999999987 36899999999999999999999 9999999964
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=98.59 E-value=4.7e-08 Score=82.98 Aligned_cols=50 Identities=16% Similarity=0.119 Sum_probs=44.0
Q ss_pred cceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--eEeeeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG--DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~--~~~kTkv~~~t~~P~~~~~ 476 (477)
....|+|+|++|+||+. .+.+||||++++++ ++.||+++++|+||.||..
T Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~ 57 (132)
T 3pyc_A 3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQH 57 (132)
T ss_dssp SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEE
T ss_pred CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCE
Confidence 45789999999999986 46899999999975 6779999999999999964
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=3.8e-08 Score=84.14 Aligned_cols=50 Identities=14% Similarity=0.105 Sum_probs=43.5
Q ss_pred cceEEEEEEeeeecCCCC---C-----------CCCcEEEEEEcCeEe-eeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEGE---N-----------HNNPYAIILYKGDKK-RTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~~---~-----------~~DPyvkv~l~~~~~-kTkv~~~t~~P~~~~~ 476 (477)
..|.|+|+|++|+||+.. + .+||||++++++++. ||+++++|+||.||+.
T Consensus 4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~ 68 (136)
T 1gmi_A 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDE 68 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEE
T ss_pred cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCE
Confidence 579999999999999852 2 399999999988764 9999999999999964
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=5.2e-08 Score=86.96 Aligned_cols=50 Identities=18% Similarity=0.104 Sum_probs=45.0
Q ss_pred cceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
..+.|.|+|.+|++|+. .+.+||||+++++++++||+++++|+||.||..
T Consensus 34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~ 86 (173)
T 2nq3_A 34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQP 86 (173)
T ss_dssp CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEE
T ss_pred CceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCE
Confidence 67899999999999983 245999999999998889999999999999964
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=98.52 E-value=6.7e-08 Score=84.23 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=42.2
Q ss_pred CcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC------eEeeeeeeeeccCccceec
Q 011813 426 SGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG------DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 426 ~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~------~~~kTkv~~~t~~P~~~~~ 476 (477)
...+.|+|+|++|+||+. .+.+||||++++++ +++||+++++|+||.||..
T Consensus 17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~ 76 (153)
T 3b7y_A 17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEE 76 (153)
T ss_dssp TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEE
T ss_pred CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCE
Confidence 378999999999999986 46899999999974 4669999999999999964
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=1.9e-07 Score=79.32 Aligned_cols=48 Identities=15% Similarity=0.073 Sum_probs=39.7
Q ss_pred cceEEEEEEeeeecCCCCCCCCcEEEEEEcCeEeeeeeee-eccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKVSF-LSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~~~~~DPyvkv~l~~~~~kTkv~~-~t~~P~~~~~ 476 (477)
+.+.|.|+|++|++|+.++.+||||++. + ++.||++++ +|+||.||+.
T Consensus 3 ~~~~L~V~V~~A~~l~~~g~~DPYv~v~-~-~~~kt~~~~~~t~nP~WnE~ 51 (131)
T 2cjt_A 3 VMSLLCVGVKKAKFDGAQEKFNTYVTLK-V-QNVKSTTIAVRGSQPSWEQD 51 (131)
T ss_dssp CCEEEEEEEEEEECSSCGGGCEEEEEEE-E-TTEEEECCCEESSSCEEEEE
T ss_pred cceEEEEEEEEeECCCCCCCcCeEEEEE-e-cCEEEeEecCCCCCceECCE
Confidence 5689999999999998778899999999 3 344666554 7999999965
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.32 E-value=4.7e-07 Score=94.63 Aligned_cols=50 Identities=22% Similarity=0.258 Sum_probs=46.2
Q ss_pred cceEEEEEEeeeecCCC--CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEG--ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~--~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
..|.|+|.|++|+||++ .+.+||||+|++++++.||+++++|+||.||.+
T Consensus 392 ~~~~L~V~V~~A~~L~~D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~ 443 (540)
T 3nsj_A 392 GLAHLVVSNFRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDK 443 (540)
T ss_dssp TEEEEEEEEEEEESCCCSSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCC
T ss_pred cccEEEEEEEEccCCCcccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeE
Confidence 57999999999999987 468999999999999999999999999999965
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=3.6e-07 Score=80.93 Aligned_cols=48 Identities=15% Similarity=0.034 Sum_probs=40.1
Q ss_pred cceEEEEEEeeeecCCCCCCCCcEEEEEEcCeEeeeeeee-eccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKVSF-LSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~~~~~DPyvkv~l~~~~~kTkv~~-~t~~P~~~~~ 476 (477)
..+.|.|+|++|++|+..+.+||||++. +++.||++++ +|+||.||+.
T Consensus 12 ~~~~L~V~V~~A~~l~~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~ 60 (167)
T 2cjs_A 12 ILSLLCVGVKKAKFDGAQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQD 60 (167)
T ss_dssp CCCEEEEEEEEEECSSCGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEE
T ss_pred ceEEEEEEEEEEECCCCCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCE
Confidence 3679999999999997778899999999 3445777765 7999999965
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.2e-06 Score=72.56 Aligned_cols=47 Identities=13% Similarity=0.193 Sum_probs=42.6
Q ss_pred eEEEEEEeeeecCCCCCCCCcEEEEEEcCeEeeeeeee-eccCccceecC
Q 011813 429 GLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKVSF-LSLLYTYSLQL 477 (477)
Q Consensus 429 g~L~V~V~~A~~L~~~~~~DPyvkv~l~~~~~kTkv~~-~t~~P~~~~~~ 477 (477)
=-|+|.|.+|.||++ .+|||+++.+.+.++|||+++ ++++|.||+.|
T Consensus 21 msL~V~l~~a~~Lpg--~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F 68 (144)
T 3l9b_A 21 MALIVHLKTVSELRG--RADRIAKVTFRGQSFYSRVLENCEDVADFDETF 68 (144)
T ss_dssp EEEEEEEEEEESCCS--CEEEEEEEEETTEEEECCCEEEECSCEEEEEEE
T ss_pred EEEEEEEEEecCCCC--CCCCeEEEEEeccceeeEEeccCCCCceEcceE
Confidence 469999999999996 699999999999999999998 69999999643
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=98.06 E-value=2.8e-06 Score=88.76 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=45.4
Q ss_pred cceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
..|.|.|+|.+|+||+. .+.+||||++++++++.||+++++|+||.||..
T Consensus 385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~ 437 (510)
T 3jzy_A 385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFN 437 (510)
T ss_dssp -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEE
T ss_pred CCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCce
Confidence 67899999999999976 468999999999999999999999999999964
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=97.84 E-value=7.3e-06 Score=88.48 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=44.8
Q ss_pred cceEEEEEEeeeecCCC------CCCCCcEEEEEEcC---eEeeeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEG------ENHNNPYAIILYKG---DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~------~~~~DPyvkv~l~~---~~~kTkv~~~t~~P~~~~~ 476 (477)
..+.|.|+|++|+||+. .+.+||||++++++ +++||+++++|+||.||..
T Consensus 16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEt 74 (749)
T 1cjy_A 16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNET 74 (749)
T ss_dssp CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEE
T ss_pred CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeE
Confidence 68999999999999987 36899999999984 6779999999999999854
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=97.77 E-value=1.8e-05 Score=84.44 Aligned_cols=50 Identities=14% Similarity=0.207 Sum_probs=43.9
Q ss_pred cceEEEEEEeeeecCCC-----CCCCCcEEEEEEcC-----eEeeeeeeeec-cCccceec
Q 011813 427 GAGLLSVLVQGAEDVEG-----ENHNNPYAIILYKG-----DKKRTKVSFLS-LLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~-----~~~~DPyvkv~l~~-----~~~kTkv~~~t-~~P~~~~~ 476 (477)
..+.|+|+|++|+||+. ++.+||||+|.+.+ .++||+++++| +||.||..
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~ 555 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDME 555 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEE
T ss_pred cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCce
Confidence 67999999999999986 35799999999955 56799999998 99999964
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=97.68 E-value=5.3e-05 Score=81.91 Aligned_cols=49 Identities=22% Similarity=0.283 Sum_probs=42.8
Q ss_pred ceEEEEEEeeeecCCC---CCCCCcEEEEEE-----cCeEeeeeeeeeccCccceec
Q 011813 428 AGLLSVLVQGAEDVEG---ENHNNPYAIILY-----KGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 428 ~g~L~V~V~~A~~L~~---~~~~DPyvkv~l-----~~~~~kTkv~~~t~~P~~~~~ 476 (477)
.+.|.|.|.+|+||+. ++.+||||++++ ...++||+++++|+||.||..
T Consensus 171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~ 227 (674)
T 3pfq_A 171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNET 227 (674)
T ss_dssp SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEE
T ss_pred cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccce
Confidence 4689999999999976 578999999999 446679999999999999854
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00013 Score=79.56 Aligned_cols=49 Identities=18% Similarity=0.185 Sum_probs=42.1
Q ss_pred cceEEEEEEeeeecCCCCCCCCcEEEEEEcC-------eEeeeeeeeec-cCccceec
Q 011813 427 GAGLLSVLVQGAEDVEGENHNNPYAIILYKG-------DKKRTKVSFLS-LLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~~~~~DPyvkv~l~~-------~~~kTkv~~~t-~~P~~~~~ 476 (477)
..+.|+|.|.+|++|+. +.+||||+|.+.+ +++||+++++| +||.||.+
T Consensus 648 ~~~~L~V~Visaq~L~~-~~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~ 704 (816)
T 3qr0_A 648 VAGTIEIKIISAQFLSD-KQISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEK 704 (816)
T ss_dssp CCEEEEEEEEEEECCCS-SCCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCC
T ss_pred cceEEEEEEEEcccCCC-CCCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCc
Confidence 46899999999999986 4799999999975 56699999864 99999964
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00023 Score=77.92 Aligned_cols=48 Identities=21% Similarity=0.133 Sum_probs=40.5
Q ss_pred cceEEEEEEeeeecCCCCCCCCcEEEEEEcC------eEeeee-eeee-ccCcccee
Q 011813 427 GAGLLSVLVQGAEDVEGENHNNPYAIILYKG------DKKRTK-VSFL-SLLYTYSL 475 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~~~~~DPyvkv~l~~------~~~kTk-v~~~-t~~P~~~~ 475 (477)
..+.|+|.|++|++|+. +.+||||+|.+.+ +++||+ ++++ ++||.||.
T Consensus 676 ~~~~L~V~Visa~~L~~-~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnE 731 (799)
T 2zkm_X 676 VATTLSITVISGQFLSE-RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKE 731 (799)
T ss_dssp TCEEEEEEEEEEESCCS-SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCC
T ss_pred eeeeEEEEEEeccccCc-cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeec
Confidence 57899999999999986 5799999999953 345899 8775 59999986
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00031 Score=77.14 Aligned_cols=48 Identities=21% Similarity=0.097 Sum_probs=40.8
Q ss_pred cceEEEEEEeeeecCCCCCCCCcEEEEEEcC------eEeeeeeeeec-cCcccee
Q 011813 427 GAGLLSVLVQGAEDVEGENHNNPYAIILYKG------DKKRTKVSFLS-LLYTYSL 475 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~~~~~DPyvkv~l~~------~~~kTkv~~~t-~~P~~~~ 475 (477)
....|+|.|++|++|+.. .+||||+|.+.+ .++||+++++| +||.||.
T Consensus 723 ~~~~L~V~Visaq~L~~~-~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnE 777 (885)
T 3ohm_B 723 VANALRVKVISGQFLSDR-KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDE 777 (885)
T ss_dssp CCEEEEEEEEEEESCCSS-CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCC
T ss_pred cceEEEEEEEEeccCccc-CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeecc
Confidence 356899999999999974 799999999975 24699999865 9999986
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0003 Score=62.37 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=28.1
Q ss_pred CCCCcEEEEEEcC------eEeeeeeeeeccCccceec
Q 011813 445 NHNNPYAIILYKG------DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 445 ~~~DPyvkv~l~~------~~~kTkv~~~t~~P~~~~~ 476 (477)
+.+||||++++++ ++.||+++++|+||.||..
T Consensus 27 g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~ 64 (176)
T 3m7f_B 27 GASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEE 64 (176)
T ss_dssp CCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEE
T ss_pred CCcCcEEEEEEECCCCCcccceeCceECCCCCCcccce
Confidence 5799999999986 5669999999999999964
|
| >3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.87 Score=41.17 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=41.8
Q ss_pred CceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEEEecCCCC----CCCeeEEEEEECcc
Q 011813 299 PWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKVG----GHDRLGMQLVPLKL 355 (477)
Q Consensus 299 ~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V~d~d~~~----~d~~lG~~~v~L~~ 355 (477)
...+|.|...+.+|.|+|++.+.++.. ....|.|++++...-. .+..+|.+-+||-.
T Consensus 77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~ 139 (220)
T 3l4c_A 77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR 139 (220)
T ss_dssp SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence 346788888999999999999998743 3567999998765321 12467888777754
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.06 E-value=0.16 Score=42.23 Aligned_cols=50 Identities=12% Similarity=0.080 Sum_probs=38.6
Q ss_pred cceEEEEEEeeeecCCC----CCCCCcEEEEEEcCeEe----ee-eeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEG----ENHNNPYAIILYKGDKK----RT-KVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~----~~~~DPyvkv~l~~~~~----kT-kv~~~t~~P~~~~~ 476 (477)
..+.|+|.+.++.--+. ....||||.|.+..... +| .++++|.+|.||..
T Consensus 8 m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~ 66 (138)
T 2enj_A 8 MSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDST 66 (138)
T ss_dssp CCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSE
T ss_pred cCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccce
Confidence 56789999988875432 34799999999876433 77 77889999999853
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=92.96 E-value=0.15 Score=41.68 Aligned_cols=50 Identities=14% Similarity=0.188 Sum_probs=37.0
Q ss_pred cceEEEEEEeeeec--CCC-CCCCCcEEEEEEcCeEe----ee-eeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAED--VEG-ENHNNPYAIILYKGDKK----RT-KVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~--L~~-~~~~DPyvkv~l~~~~~----kT-kv~~~t~~P~~~~~ 476 (477)
.+..|+|.+.++.- |+. ....||||.+.+..... +| .++++|.+|.||..
T Consensus 4 m~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~ 61 (126)
T 1yrk_A 4 MAPFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKST 61 (126)
T ss_dssp CCCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCE
T ss_pred cCccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccce
Confidence 56789999987764 332 24699999998875442 55 77779999999853
|
| >2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=92.55 E-value=2 Score=36.63 Aligned_cols=128 Identities=12% Similarity=0.118 Sum_probs=83.7
Q ss_pred ccCCceEEEEEEEEcccccccc-ccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecC-------CCCeE
Q 011813 259 IKKPVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP-------ESQIL 330 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d-~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~-------~~~~L 330 (477)
...-.+.+.|+|.++.--+..- ..+..+|+.-+.+.=-....+.|.+.. ..+|.+|.+-.+.|... .+..+
T Consensus 13 l~~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l 91 (156)
T 2yrb_A 13 LERGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTI 91 (156)
T ss_dssp CCSSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCE
T ss_pred ccCCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCE
Confidence 3445689999999987322211 123457766666543344445676655 78999999888888522 14578
Q ss_pred EEEEEecCCCCCCCeeEEEEEECcccCCCCc-eEEEEecccccCCCCCCCC-ccceEEEEEEEEEe
Q 011813 331 QLQVFDWDKVGGHDRLGMQLVPLKLLTPHET-KEFTLDLLKHTNISDPKDM-KQRGKIVVELTYVP 394 (477)
Q Consensus 331 ~v~V~d~d~~~~d~~lG~~~v~L~~l~~~~~-~~~~~~l~~~~~~~~~~~~-~~~G~l~l~l~y~p 394 (477)
.++++.... +..+.+|.+.++|.++..... .....++... .+. ..-|.|.+.++...
T Consensus 92 ~lELhqa~g-~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~------~g~~~~~G~LeywiRL~~ 150 (156)
T 2yrb_A 92 TLEVHQAYS-TEYETIAACQLKFHEILEKSGRIFCTASLIGT------KGDIPNFGTVEYWFRLRV 150 (156)
T ss_dssp EEEEEEECS-SCEEEEEEEEECCSHHHHCCSCEEEEEEECBS------SSCCTTSEEEEEEEEEEE
T ss_pred EEEEEEeeC-CCceEEEEEEEEhHHhhCcCCceEEEEEEEcC------CCCcceEEEEEEEEEEec
Confidence 999988752 345689999999999875543 3334444321 112 47899999999875
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=89.25 E-value=1.7 Score=48.06 Aligned_cols=93 Identities=11% Similarity=0.115 Sum_probs=61.8
Q ss_pred CceEEEEEEEEccccccccccCCCCcEEEEEE--cCcccC-ceeeeeeCCCCCCeeeeEEEEEee--c-CCCCeEEEEEE
Q 011813 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVF 335 (477)
Q Consensus 262 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~-~~kT~v~~~t~nP~WnE~f~f~v~--~-~~~~~L~v~V~ 335 (477)
-...++|+|.++.++... ..++-||.+.+ |++... ...|+.+.-..+|.|||...|.+. + +....|.+++|
T Consensus 215 ~~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~ 291 (940)
T 2wxf_A 215 LEQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALY 291 (940)
T ss_dssp CCSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEE
T ss_pred cCCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEE
Confidence 346799999999988653 34677887765 444332 234544455678999999999875 3 34778999999
Q ss_pred ecCCC--C----------CCCeeEEEEEECcccC
Q 011813 336 DWDKV--G----------GHDRLGMQLVPLKLLT 357 (477)
Q Consensus 336 d~d~~--~----------~d~~lG~~~v~L~~l~ 357 (477)
+.... + .+..+|.+.++|-+..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~ 325 (940)
T 2wxf_A 292 AVVEKAKKARSTKKKSKKADCPIAWANLMLFDYK 325 (940)
T ss_dssp EEC----------------CEEEEEEEEESBCTT
T ss_pred EecCCccCccccccccccccceEEEEeeeEECCc
Confidence 96432 1 2347888888886644
|
| >3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A | Back alignment and structure |
|---|
Probab=89.17 E-value=2.1 Score=47.76 Aligned_cols=93 Identities=23% Similarity=0.219 Sum_probs=62.2
Q ss_pred ceEEEEEEEEccccccccccCCCCcEEEEEE--cCcccCc-eeeeeeCCCCCCeeeeEEEEEee--c-CCCCeEEEEEEe
Q 011813 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPW-KKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFD 336 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~~-~kT~v~~~t~nP~WnE~f~f~v~--~-~~~~~L~v~V~d 336 (477)
...++|+|.++.++.... ....+-||.+.+ |++.... .+|+. ....+|.|||...|.+. + +....|.++||+
T Consensus 354 ~~~f~v~i~~~~~~n~~~-~~~~~~~V~~~l~hG~~~L~~~~~T~~-~~~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~ 431 (1091)
T 3hhm_A 354 NSALRIKILCATYVNVNI-RDIDKIYVRTGIYHGGEPLCDNVNTQR-VPCSNPRWNEWLNYDIYIPDLPRAARLCLSICS 431 (1091)
T ss_dssp CSEEEEEEEEESCCCCCC-SSCCCCCEEEEEESSSCSSCCEECCCC-CCTTSCEEEEEEEEEEEGGGCCTTCEEEEEECC
T ss_pred CCCEEEEEEEecCCCCCc-cccceEEEEEEEEECCEEccCceeccc-cCCCCCCCCeeEEecCccccCChhcEEEEEEEE
Confidence 457899999998886432 234677888877 4433322 23433 33567889999999875 3 347789999998
Q ss_pred cCCC----CCCCeeEEEEEECcccC
Q 011813 337 WDKV----GGHDRLGMQLVPLKLLT 357 (477)
Q Consensus 337 ~d~~----~~d~~lG~~~v~L~~l~ 357 (477)
.... ..+..+|.+.++|-+..
T Consensus 432 ~~~~~~~~~~~~~lg~~n~~lfd~~ 456 (1091)
T 3hhm_A 432 VKGRKGAKEEHCPLAWGNINLFDYT 456 (1091)
T ss_dssp CCCCC-------CCEEEEEESBCTT
T ss_pred ecCccCcccccceeEEeeeeeEccC
Confidence 7642 12457999999987654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 477 | ||||
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 1e-25 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 7e-21 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 8e-21 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 2e-20 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 1e-19 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 3e-18 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 2e-17 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 3e-17 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 7e-17 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 1e-16 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 7e-16 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 1e-15 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 2e-15 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 3e-15 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 7e-14 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 3e-13 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 1e-11 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 2e-11 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 7e-10 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 2e-09 |
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 99.4 bits (247), Expect = 1e-25
Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 10/144 (6%)
Query: 256 SVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWN 315
S P G L V +V A L DFL DPYV+L+ + K + PEWN
Sbjct: 2 SSGSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQD--QKSNVAEGMGTTPEWN 59
Query: 316 ENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNIS 375
E F V E +++ + ++FD D D +G +PL+ + F + T +
Sbjct: 60 ETFIFTVSEGTTEL-KAKIFDKDVGTEDDAVGEATIPLEPV-------FVEGSIPPTAYN 111
Query: 376 DPKDMKQRGKIVVELTYVPFKEDS 399
KD + +G+I V L++ P S
Sbjct: 112 VVKDEEYKGEIWVALSFKPSGPSS 135
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.0 bits (212), Expect = 7e-21
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 11/133 (8%)
Query: 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKL 320
K VGIL VKV++A+ LL DF G SDP+ L L ++L KNLNPEWN+ F
Sbjct: 3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHT---VYKNLNPEWNKVFTF 59
Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDM 380
+K+ + ++ VFD D D LG +PL + + + L +
Sbjct: 60 PIKDIHDVL-EVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKD-------LEQ 111
Query: 381 KQRGKIVVELTYV 393
+G I +E+ +
Sbjct: 112 AFKGVIYLEMDLI 124
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.9 bits (212), Expect = 8e-21
Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 14/132 (10%)
Query: 266 LHVKVVRASKLLK---KDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
V V+RA+K+ K D L T DPYV+L ++ K+T ++NP WNE F+ ++
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 323 KEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQ 382
+ +L++ + D + + LG + + E KE +
Sbjct: 65 DPNQENVLEITLMDANY-VMDETLGTATFTVSSMKVGEKKEVPFIFNQ----------VT 113
Query: 383 RGKIVVELTYVP 394
+ + L
Sbjct: 114 EMVLEMSLEVAS 125
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 84.8 bits (209), Expect = 2e-20
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNEN--FKLV 321
L V +++A++L D GTSDPYVK+ L +K +T V +K LNP +NE FK+
Sbjct: 34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369
E + L + V+D+D+ HD +G VP+ + E DL
Sbjct: 94 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 82.8 bits (204), Expect = 1e-19
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL--PWKKTTVKKKNLNPEWNENFKLV 321
+L V V A L+ D G SDPYVKL L + +KT K +LNPEWNE F+
Sbjct: 15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74
Query: 322 VKEPE-SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKH 371
+KE + + L ++++DWD +D +G + L + LL
Sbjct: 75 LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGW-FKLLSQ 124
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.2 bits (192), Expect = 3e-18
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL--PWKKTTVKKKNLNPEWNENFKLV 321
L V ++ A L ++ +PYVK+ ++ ++T KK L P+WN+ F
Sbjct: 14 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 73
Query: 322 VKEP---ESQILQLQVFDWDKVGGH--DRLGMQLVPL-KLLTPHETKEFTL 366
++L++ ++D +V + LG L+ L L E + L
Sbjct: 74 PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKL 124
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 77.2 bits (189), Expect = 2e-17
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLV 321
G L V ++ A L K D G SDPYVK+ L G++L KKTT+KK LNP +NE+F
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 322 VKEPESQILQLQV--FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKD 379
V + Q +Q+ V D+DK+G +D +G V + I+
Sbjct: 85 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHT 144
Query: 380 MKQRGKIVVELT 391
++ ++ L
Sbjct: 145 LQVEEEVDAMLA 156
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 76.5 bits (187), Expect = 3e-17
Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 14/137 (10%)
Query: 250 PILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW--------- 300
PI + I +G L + +++A L+ +D G SDP+VK+ L +
Sbjct: 4 PITGEIQLQINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAE 63
Query: 301 --KKTTVKKKNLNPEWNENFKLVV---KEPESQILQLQVFDWDKVGGHDRLGMQLVPLKL 355
++T +K+LNPEWN+ ++ + L++ V+D+D+ +D LG L+ L
Sbjct: 64 YKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSS 123
Query: 356 LTPHETKEFTLDLLKHT 372
+ + L + T
Sbjct: 124 TSHLDNTPRWYPLKEQT 140
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 75.1 bits (184), Expect = 7e-17
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW--KKTTVKKKNLNPEWNENFKLV 321
L V V++A L K D G SDPYVK++L K KKT VKK N +NE F
Sbjct: 15 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 74
Query: 322 VKEPESQ--ILQLQVFDWDKVGGHDRLGMQLVPLK 354
+ + ++ V D ++ ++ +G ++
Sbjct: 75 IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGAT 109
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.4 bits (182), Expect = 1e-16
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 5/112 (4%)
Query: 264 GILHVKVVRASKLLKKDFLG-TSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
V + A L D TSDPY+K+++ EK KT V +K L+P ++E F
Sbjct: 22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81
Query: 323 KEPE---SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETK-EFTLDLLK 370
L + +D+ D +G L+PL + E K +++
Sbjct: 82 IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 72.5 bits (177), Expect = 7e-16
Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKK--TTVKKKNLNPEWNENFKLV 321
G+L V +++AS L D G SDPYVK SL E KK T++KK LNP +NE
Sbjct: 20 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 79
Query: 322 V--KEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKH 371
V + E+ L + V D+D +G ++ +G+ V + PH + + ++L +
Sbjct: 80 VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHW-AEMLAN 130
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.9 bits (173), Expect = 1e-15
Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 15/136 (11%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
L + V+ A K PYV++++ G+ KKT +P+W + ++V
Sbjct: 6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQS---KKTEKCNNTNSPKWKQPLTVIVT 62
Query: 324 EPESQILQLQVFDWDKVGGHDRLGMQLVPLK-LLTPH----ETKEFTLDLLKHTNISDPK 378
L +V+ + LG + + L + E TL L D +
Sbjct: 63 PV--SKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLG-----GDKE 115
Query: 379 DMKQRGKIVVELTYVP 394
+ G + + L +
Sbjct: 116 PTETIGDLSICLDGLQ 131
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 70.9 bits (173), Expect = 2e-15
Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 6/105 (5%)
Query: 261 KPVGILHVKVVRASKLLK--KDFLGTSDPYVKLSLTGEKL---PWKKTTVKKKNLNPEWN 315
+P L V+++ +L K K+ DP V + + G + + NP W+
Sbjct: 2 RPE-RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWD 60
Query: 316 ENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
F+ V P+ +++ V D+D +D +G +P L
Sbjct: 61 MEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY 105
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 70.2 bits (171), Expect = 3e-15
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKK--TTVKKKNLNPEWNENFKLV 321
G L V ++R L D G SDP+VKL L + K T +KKK LNPE+NE F
Sbjct: 15 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74
Query: 322 VKEPESQ--ILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTN 373
+K + L + V+D+D +D +G L + E + + LK+ +
Sbjct: 75 IKHSDLAKKSLDISVWDYDIGKSNDYIGG--CQLGISAKGERLKHWYECLKNKD 126
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 66.1 bits (160), Expect = 7e-14
Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNE--NFKLV 321
L V++++A L KD G SDPYVK+ L ++ +T V +K LNP +NE F +
Sbjct: 18 DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVP 77
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTL--DLLK 370
+ E + L V+D+D+ HD +G ++ L + + L D+L+
Sbjct: 78 LAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE 128
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 64.5 bits (156), Expect = 3e-13
Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 25/142 (17%)
Query: 264 GILHVKVVRASKLLKKDFL-----------GTSDPYVKLSLTGEKLPWKKTTVKKKNLNP 312
G+L +K+ A L + DPY+ L++ + +T K+K +P
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSR--IGQTATKQKTNSP 63
Query: 313 EWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHT 372
W++ F V +L VF +G D + + + L + ++ F +
Sbjct: 64 AWHDEFVTDVCNGRKI--ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWI---- 117
Query: 373 NISDPKDMKQRGKIVVELTYVP 394
D++ GK+ V +
Sbjct: 118 ------DLEPEGKVYVIIDLSG 133
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.9 bits (144), Expect = 1e-11
Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 6/111 (5%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLS-LTGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
L V + A + G D YV+ S +T +KK+ L+ W E L +
Sbjct: 26 AELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPL 82
Query: 323 KEPESQ--ILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKH 371
E E L L + D+ H G + L + +L
Sbjct: 83 AEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS 133
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 58.6 bits (141), Expect = 2e-11
Identities = 20/131 (15%), Positives = 43/131 (32%), Gaps = 17/131 (12%)
Query: 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW--KKTTVKKKNLNPEWNENFKLVV 322
L + + S P+ + + K KK + PEW F +
Sbjct: 4 FLRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHI 63
Query: 323 KEPESQILQLQVFDWDKV-GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMK 381
E +Q+ + + +G+ ++ + + EF LDL +
Sbjct: 64 YEGRV--IQIVLMRAAEDPMSEVTVGVSVLAERCKKNNGKAEFWLDL------------Q 109
Query: 382 QRGKIVVELTY 392
+ K+++ + Y
Sbjct: 110 PQAKVLMCVQY 120
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.6 bits (131), Expect = 7e-10
Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 15/101 (14%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTG-----EKLPWKKTTVKKKNLNPEWNEN--F 318
L + V+ L ++ YV++ L G ++ K + ++NP W E
Sbjct: 3 LSITVISGQFLSERSV----RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58
Query: 319 KLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH 359
+ PE L++ V + + LG +++P+ L
Sbjct: 59 FEKILMPELASLRVAVMEEG----NKFLGHRIIPINALNSG 95
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 53.2 bits (127), Expect = 2e-09
Identities = 22/126 (17%), Positives = 48/126 (38%), Gaps = 18/126 (14%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
+L V V +A ++ + YV L + K TT+ + P W ++F +
Sbjct: 2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVK----STTIAVRGSQPSWEQDFMFEIN 54
Query: 324 EPESQILQLQVFDWDKVGGHDRLGMQLVPLKLL--TPHETKEFTLDLLKHTNISDPKDMK 381
+ + ++V++ + +G +PL+ + + E L L D + +
Sbjct: 55 RLDLGLT-VEVWNKGLI-WDTMVGTVWIPLRTIRQSNEEGPGEWLTL-------DSQAIM 105
Query: 382 QRGKIV 387
+I
Sbjct: 106 ADSEIC 111
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 477 | |||
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.88 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.87 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.85 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.81 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.8 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.78 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.78 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.76 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.73 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.73 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.73 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.71 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.71 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.69 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.68 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.66 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.64 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.64 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.57 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.37 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.15 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.1 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.07 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.07 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.04 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.04 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.02 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.02 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 98.96 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 98.95 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 98.94 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 98.89 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 98.66 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 98.63 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 98.63 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 98.63 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 98.61 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 98.41 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 98.07 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 97.79 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 94.36 |
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=2.9e-23 Score=175.12 Aligned_cols=123 Identities=36% Similarity=0.560 Sum_probs=105.4
Q ss_pred CCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCC
Q 011813 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV 340 (477)
Q Consensus 261 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~ 340 (477)
.+.|.|+|+|++|++|+.++..|.+||||+++++++. ++|+++++|.||.|||+|.|.+.+. ...|.|+|||++.+
T Consensus 3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~---~~T~~~~~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~ 78 (126)
T d2ep6a1 3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDR---LQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGD 78 (126)
T ss_dssp CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEE---EECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETT
T ss_pred CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeE---EEEEeeCCceeEEEEEEEEEEEecc-CceeEEEEEEccCC
Confidence 4689999999999999999999999999999998765 4899999999999999999999865 47899999999999
Q ss_pred CCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 341 GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 341 ~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
++|++||++.++|+++..+..+++++.... ..++.+|+|+++++|..
T Consensus 79 ~~d~~lG~~~i~l~~l~~~~~~~~~l~~~~-------~~~~~~G~i~l~~~~i~ 125 (126)
T d2ep6a1 79 KPPDFLGKVAIPLLSIRDGQPNCYVLKNKD-------LEQAFKGVIYLEMDLIY 125 (126)
T ss_dssp EEEEECCBCEEEGGGCCSSCCEECCCBCSC-------TTSCCSSEEEEEEEEEE
T ss_pred cCcceEEEEEEEHHHCCCCCceEEEccccC-------CCCceeEEEEEEEEEEE
Confidence 999999999999999988766554443211 23566899999999863
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.87 E-value=4.6e-22 Score=169.92 Aligned_cols=126 Identities=32% Similarity=0.508 Sum_probs=105.9
Q ss_pred cccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeC-CCCCCeeeeEEEEEeecCCCCeEEEEEEe
Q 011813 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEPESQILQLQVFD 336 (477)
Q Consensus 258 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~-~t~nP~WnE~f~f~v~~~~~~~L~v~V~d 336 (477)
....|.|+|+|+|++|++|+..+..|++||||+++++++.. +|++++ ++.||.|||+|.|.+.+. ...|+|+|||
T Consensus 4 ~~~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~---~t~~~~~~~~nP~Wne~f~f~v~~~-~~~L~v~V~d 79 (136)
T d1wfja_ 4 GSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQ---KSNVAEGMGTTPEWNETFIFTVSEG-TTELKAKIFD 79 (136)
T ss_dssp CCCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEE---ECCCCTTCCSSCEEEEEEEEEEESS-CCEEEEEECC
T ss_pred CCCCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeE---EEEEEecCCCcEEEeeEEEEEEcCc-cceEEEEEEE
Confidence 34678999999999999999999999999999999987653 676665 689999999999999864 4579999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCC-CceEEEEecccccCCCCCCCCccceEEEEEEEEEec
Q 011813 337 WDKVGGHDRLGMQLVPLKLLTPH-ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (477)
Q Consensus 337 ~d~~~~d~~lG~~~v~L~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~ 395 (477)
+|.+++|++||++.++|.++... .....|+.+.+ +.+.+|+|+++++|.|.
T Consensus 80 ~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~--------~~~~~G~i~l~l~~~p~ 131 (136)
T d1wfja_ 80 KDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK--------DEEYKGEIWVALSFKPS 131 (136)
T ss_dssp SSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE--------TTEEEEEEEEEEEEEEC
T ss_pred ecCCCCCCEEEEEEEEhHHhcccCCcCcEEEEecC--------CCccCEEEEEEEEEEeC
Confidence 99999999999999999987543 33455666543 35678999999999983
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=3.2e-21 Score=162.35 Aligned_cols=121 Identities=26% Similarity=0.405 Sum_probs=106.1
Q ss_pred ceEEEEEEEEccccccc---cccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCC
Q 011813 263 VGILHVKVVRASKLLKK---DFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDK 339 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~---d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~ 339 (477)
.+.|+|+|++|+||+.. |..|.+||||++++++.....++|+++.++.||.|||+|.|.+.+.....|.|+|||++.
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~ 81 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence 47899999999999864 456899999999998766566799999999999999999999987777889999999986
Q ss_pred CCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 340 ~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
. +|++||++.++|+++..+.....|++|. ....|+|++++++.|
T Consensus 82 ~-~d~~lG~~~i~L~~l~~~~~~~~~~~L~----------~~~~g~i~~~l~~~~ 125 (126)
T d1rlwa_ 82 V-MDETLGTATFTVSSMKVGEKKEVPFIFN----------QVTEMVLEMSLEVAS 125 (126)
T ss_dssp S-CCEEEEEEEEEGGGSCTTCEEEEEEEET----------TTEEEEEEEEEECCC
T ss_pred C-CCCeEEEEEEEHHHccCCCeEEEEEEcc----------CCCeEEEEEEEEEEe
Confidence 4 6899999999999999988888999884 346799999999876
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.81 E-value=2e-19 Score=153.25 Aligned_cols=117 Identities=24% Similarity=0.340 Sum_probs=100.2
Q ss_pred CceEEEEEEEEcccccccc-----------ccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeE
Q 011813 262 PVGILHVKVVRASKLLKKD-----------FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQIL 330 (477)
Q Consensus 262 ~~G~L~V~v~~A~~L~~~d-----------~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L 330 (477)
-.|.|+|+|++|++|++.+ ..+.+||||+++++++.. .+|+++.++.||.|||+|.|.+.+ .+.|
T Consensus 4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~--~~T~~~~~t~~P~Wne~f~f~v~~--~~~l 79 (136)
T d1gmia_ 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRI--GQTATKQKTNSPAWHDEFVTDVCN--GRKI 79 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEE--EECCCCSSCSSCEEEEEEEEEEEE--ECEE
T ss_pred EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcC--cEeeEEcCCCCccCccEEEEEEec--CCce
Confidence 3599999999999998754 346789999999986543 579999999999999999999975 3689
Q ss_pred EEEEEecCCCCCCCeeEEEEEECcccCCCC--ceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 331 QLQVFDWDKVGGHDRLGMQLVPLKLLTPHE--TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 331 ~v~V~d~d~~~~d~~lG~~~v~L~~l~~~~--~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
.|+|||++.+++|++||++.++|+++..+. ....|++|. +.|++++.+++.|
T Consensus 80 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~------------p~G~v~l~v~~~~ 133 (136)
T d1gmia_ 80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE------------PEGKVYVIIDLSG 133 (136)
T ss_dssp EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB------------SSCEEEEEEEEEE
T ss_pred EEEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCC------------CCcEEEEEEEEEe
Confidence 999999999999999999999999997553 456788763 4699999999987
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=2.3e-19 Score=152.20 Aligned_cols=121 Identities=20% Similarity=0.289 Sum_probs=98.8
Q ss_pred eEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCC
Q 011813 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d 343 (477)
+.|.|+|++|++++.++..+.+||||++.++++. ++|+++++|.||.|||.|.|.+.+ .+.|.|+|||+|.+++|
T Consensus 6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~---~kT~v~~~t~nP~wne~f~f~~~~--~~~l~~~V~d~d~~~~d 80 (133)
T d2nq3a1 6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQS---KKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSD 80 (133)
T ss_dssp EEEEEEEEEEEECCCC--CCCCCEEEEEEETTEE---EECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSCC
T ss_pred eEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeE---EeeEEEEecccEEEcceEEEEEEe--cceeEEEEEEccCCCCC
Confidence 7899999999999998888899999999999765 489999999999999999999864 46899999999999999
Q ss_pred CeeEEEEEECcccCC---C--CceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 344 DRLGMQLVPLKLLTP---H--ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 344 ~~lG~~~v~L~~l~~---~--~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
++||++.++|.++.. + ...+.++.+... ..+....|+|.+.+.+..
T Consensus 81 ~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~-----~~~~~~~G~L~v~l~~~~ 131 (133)
T d2nq3a1 81 VLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD-----KEPTETIGDLSICLDGLQ 131 (133)
T ss_dssp EEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES-----SCTTSEEEEEEEEEESEE
T ss_pred ceEEEEEEEHHHhhhhcCCceeeEEEEEecCCC-----CCCceEEEEEEEEEeeEE
Confidence 999999999998742 1 233455544321 123567899999999876
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.78 E-value=4.6e-19 Score=152.37 Aligned_cols=111 Identities=33% Similarity=0.434 Sum_probs=98.3
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEEEe
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFD 336 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V~d 336 (477)
.+...+.|+|+|++|+||+.++..|.+||||++++.+.....++|+++++|.||.|||+|.|.+... ....|.|+|||
T Consensus 29 y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d 108 (143)
T d1rsya_ 29 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD 108 (143)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred EeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEE
Confidence 3456789999999999999999889999999999976655667999999999999999999987532 46789999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 011813 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (477)
Q Consensus 337 ~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~ 369 (477)
++.++++++||++.++|.++..+.....|++|.
T Consensus 109 ~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 141 (143)
T d1rsya_ 109 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp CCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred cCCCCCCcEEEEEEEEchhccCCCCCccEEeCC
Confidence 999999999999999999999888888999874
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.78 E-value=5.8e-19 Score=149.59 Aligned_cols=107 Identities=35% Similarity=0.503 Sum_probs=92.5
Q ss_pred ceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeecCC-CCeEEEEEEecCC
Q 011813 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWDK 339 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~-~~~L~v~V~d~d~ 339 (477)
.+.|.|+|++|+||+.+|..|.+||||++++.+. ...+++|+++++|.||+|||+|.|.+.... ...|.|+|||+|.
T Consensus 14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~ 93 (132)
T d1a25a_ 14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 93 (132)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC
Confidence 4889999999999999999999999999999543 334578999999999999999999987543 4579999999999
Q ss_pred CCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 011813 340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 340 ~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
+++|++||++.++|.++..+ ....|++|..
T Consensus 94 ~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~ 123 (132)
T d1a25a_ 94 TSRNDFMGSLSFGISELQKA-GVDGWFKLLS 123 (132)
T ss_dssp SSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred CCCCcEeEEEEEeHHHcCCC-CCCeEEECCC
Confidence 99999999999999998765 4567888854
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=8.3e-19 Score=148.19 Aligned_cols=113 Identities=30% Similarity=0.425 Sum_probs=93.7
Q ss_pred cccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEEE
Q 011813 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVF 335 (477)
Q Consensus 258 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V~ 335 (477)
......+.|.|+|++|+||+.++..|.+||||++++.+....+++|+++++|.||.|||+|.|.+... ....|.|+||
T Consensus 12 ~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~ 91 (130)
T d1dqva1 12 RYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVY 91 (130)
T ss_dssp ECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEE
T ss_pred EEECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEE
Confidence 34567799999999999999999899999999999987666678999999999999999999998643 3567999999
Q ss_pred ecCCCCCCCeeEEEEEECccc-C-CCCceEEEEeccc
Q 011813 336 DWDKVGGHDRLGMQLVPLKLL-T-PHETKEFTLDLLK 370 (477)
Q Consensus 336 d~d~~~~d~~lG~~~v~L~~l-~-~~~~~~~~~~l~~ 370 (477)
|++.+++|++||++.+++... . .......|++|..
T Consensus 92 d~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~ 128 (130)
T d1dqva1 92 DFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE 128 (130)
T ss_dssp ECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred EcCCCCCCceEEEEEECchhhhhcCCCCCcEEEeccc
Confidence 999999999999999986533 2 2233456777753
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=1.1e-18 Score=149.81 Aligned_cols=108 Identities=28% Similarity=0.424 Sum_probs=92.8
Q ss_pred ceEEEEEEEEccccccccccCCCCcEEEEEEcCccc-----------CceeeeeeCCCCCCeeeeEEEEEee---cCCCC
Q 011813 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL-----------PWKKTTVKKKNLNPEWNENFKLVVK---EPESQ 328 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~-----------~~~kT~v~~~t~nP~WnE~f~f~v~---~~~~~ 328 (477)
.|.|.|+|++|+||+.++..|.+||||++++.+... .+++|+++++|.||.|||+|.|... +....
T Consensus 17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~ 96 (142)
T d1rh8a_ 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK 96 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence 589999999999999999999999999999954321 1357999999999999999999743 22466
Q ss_pred eEEEEEEecCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 011813 329 ILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 329 ~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
.|.|+|||+|.+++|++||++.++|.++..+.....|++|..
T Consensus 97 ~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~ 138 (142)
T d1rh8a_ 97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE 138 (142)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBC
T ss_pred EEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcC
Confidence 899999999999999999999999999988877788998865
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.5e-17 Score=141.88 Aligned_cols=111 Identities=24% Similarity=0.382 Sum_probs=91.9
Q ss_pred ccCCceEEEEEEEEccccccccccC-CCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEE-eecC--CCCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLG-TSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV-VKEP--ESQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g-~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~-v~~~--~~~~L~v~V 334 (477)
.....+.|.|+|++|+||+.++..+ .+||||++++.+.....++|++++++.||.|||+|.|. +... ....|+|+|
T Consensus 17 Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V 96 (138)
T d1ugka_ 17 YNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTI 96 (138)
T ss_dssp EEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEE
T ss_pred EeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEE
Confidence 4456689999999999999887665 47999999997766666799999999999999999997 3321 245899999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCC-CceEEEEecc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPH-ETKEFTLDLL 369 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~-~~~~~~~~l~ 369 (477)
||+|.+++|++||++.++|+++... ...++|..+.
T Consensus 97 ~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~ 132 (138)
T d1ugka_ 97 LSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREII 132 (138)
T ss_dssp EEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred EECCCCCCCcEEEEEEEEcccccCCCCeEEEEeecc
Confidence 9999999999999999999998644 4566777654
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=1.7e-17 Score=140.14 Aligned_cols=121 Identities=23% Similarity=0.410 Sum_probs=89.7
Q ss_pred eEEEEEEEEcccccc--ccccCCCCcEEEEEEcCc--ccCceeeeeeC-CCCCCeeeeEEEEEeecCCCCeEEEEEEecC
Q 011813 264 GILHVKVVRASKLLK--KDFLGTSDPYVKLSLTGE--KLPWKKTTVKK-KNLNPEWNENFKLVVKEPESQILQLQVFDWD 338 (477)
Q Consensus 264 G~L~V~v~~A~~L~~--~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~-~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d 338 (477)
..|+|+|++|++|+. .+..+.+||||++++.+. ...+++|++++ ++.||.|||+|.|.+.......|.++|||+|
T Consensus 4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d 83 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD 83 (131)
T ss_dssp EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence 479999999999975 445678999999999542 22346788765 5579999999999987766778999999999
Q ss_pred CCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 011813 339 KVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (477)
Q Consensus 339 ~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (477)
..++|++||++.++|+++..+. .+++|... ....-..+.|.+.+++
T Consensus 84 ~~~~d~~iG~~~i~l~~l~~g~---~~~~L~~~-----~g~~~~~~~L~v~i~~ 129 (131)
T d1qasa2 84 SSSKNDFIGQSTIPWNSLKQGY---RHVHLLSK-----NGDQHPSATLFVKISI 129 (131)
T ss_dssp TTTCCEEEEEEEEEGGGBCCEE---EEEEEECT-----TSCEEEEEEEEEEEEE
T ss_pred CCCCCcEEEEEEEEEeccCCCC---EEEECCCC-----CcCCCCCCEEEEEEEE
Confidence 9999999999999999997652 35555321 0112245677777765
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=1.8e-17 Score=141.31 Aligned_cols=109 Identities=21% Similarity=0.175 Sum_probs=93.6
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc-ccCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE-KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVF 335 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~-~~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V~ 335 (477)
.+...+.|.|+|++|++|+. .|.+||||++++.++ ....++|++++++.||+|||+|.|.+... ....|.|+||
T Consensus 21 y~~~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~ 97 (138)
T d1wfma_ 21 YDCQKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLR 97 (138)
T ss_dssp EETTTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEE
T ss_pred ECCCCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEe
Confidence 45567899999999999953 467899999999754 23356899999999999999999998643 3678999999
Q ss_pred ecCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 011813 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 336 d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
|++.++++++||++.|+|.++........|++|..
T Consensus 98 d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~ 132 (138)
T d1wfma_ 98 TCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT 132 (138)
T ss_dssp ECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred eecccccceeeeEEEEEhHHccCCCCceEeEeCCC
Confidence 99999999999999999999988888889999865
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=6.3e-17 Score=135.50 Aligned_cols=121 Identities=18% Similarity=0.288 Sum_probs=90.3
Q ss_pred ceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCC
Q 011813 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~ 342 (477)
.+.|.|+|.+|++|.+++ +.||||++++++.+ .+|++++ +.||.|||+|.|.+.++ ...|.|+|||++.. +
T Consensus 1 ~~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k---~~T~~~k-~~nP~Wne~f~f~v~~~-~~~L~v~V~d~~~~-~ 71 (128)
T d2cjta1 1 MSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVK---STTIAVR-GSQPSWEQDFMFEINRL-DLGLTVEVWNKGLI-W 71 (128)
T ss_dssp CEEEEEEEEEEECSSCGG---GCEEEEEEEETTEE---EECCCEE-SSSCEEEEEEEEEECCC-SSEEEEEEEECCSS-C
T ss_pred CeEEEEEEEEEECCCCCC---CcCeEEEEEeCCEE---EEEEEec-CCCCeEEEEEEEeeccc-cceEEEEEEeCCCc-C
Confidence 378999999999999876 57999999998654 4787776 45999999999999876 47899999999865 6
Q ss_pred CCeeEEEEEECcccCCC--CceEEEEecccccCCCC----CCCCccceEEEEEEEE
Q 011813 343 HDRLGMQLVPLKLLTPH--ETKEFTLDLLKHTNISD----PKDMKQRGKIVVELTY 392 (477)
Q Consensus 343 d~~lG~~~v~L~~l~~~--~~~~~~~~l~~~~~~~~----~~~~~~~G~l~l~l~y 392 (477)
|++||++.|+|+++..+ .....|+.|........ .........|+++.+|
T Consensus 72 d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~ 127 (128)
T d2cjta1 72 DTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF 127 (128)
T ss_dssp EEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred CcceEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEc
Confidence 89999999999998643 34456887744321110 0012234577777776
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=5.6e-17 Score=135.76 Aligned_cols=109 Identities=24% Similarity=0.362 Sum_probs=85.8
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEE-eec--CCCCeEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLV-VKE--PESQILQLQ 333 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~-v~~--~~~~~L~v~ 333 (477)
.....+.|+|+|++|+||+..+..+.+||||++++.+. ....++|+++++|.||.|||+|.|. +.. .....|.|+
T Consensus 9 y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~ 88 (125)
T d2bwqa1 9 FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEIT 88 (125)
T ss_dssp EETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEE
T ss_pred EECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEE
Confidence 45566899999999999999988899999999999543 3345789999999999999999996 432 235679999
Q ss_pred EEecCCCC--CCCeeEEEEEECcccCCCCceEEEEec
Q 011813 334 VFDWDKVG--GHDRLGMQLVPLKLLTPHETKEFTLDL 368 (477)
Q Consensus 334 V~d~d~~~--~d~~lG~~~v~L~~l~~~~~~~~~~~l 368 (477)
|||++..+ ++++||++.++|+++..+.. ..|++|
T Consensus 89 v~d~~~~~~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L 124 (125)
T d2bwqa1 89 LWDQARVREEESEFLGEILIELETALLDDE-PHWYKL 124 (125)
T ss_dssp EEEC-------CEEEEEEEEEGGGCCCSSC-EEEEEC
T ss_pred EEECCCCCCCCCeeEEEEEEEchhcCCCCC-CEEEeC
Confidence 99999753 45699999999999876543 457776
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.68 E-value=1.2e-16 Score=136.17 Aligned_cols=97 Identities=30% Similarity=0.379 Sum_probs=77.5
Q ss_pred cCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEEE
Q 011813 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVF 335 (477)
Q Consensus 260 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V~ 335 (477)
....|.|.|+|++|+||+.++..+.+||||++++.+. ...+++|++++++.||.|||+|.|.+... ....|.|+||
T Consensus 11 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~ 90 (138)
T d1w15a_ 11 QSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVL 90 (138)
T ss_dssp ETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEE
T ss_pred cCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEE
Confidence 3456899999999999999998899999999998432 33456899999999999999999998643 2456999999
Q ss_pred ecCCCCCCCeeEEEEEECccc
Q 011813 336 DWDKVGGHDRLGMQLVPLKLL 356 (477)
Q Consensus 336 d~d~~~~d~~lG~~~v~L~~l 356 (477)
|+|.+++|++||++.+++...
T Consensus 91 d~~~~~~~~~iG~~~i~l~~~ 111 (138)
T d1w15a_ 91 DSERGSRNEVIGRLVLGATAE 111 (138)
T ss_dssp ECCTTSCCEEEEEEEESTTCC
T ss_pred eCCCCCCCCEEEEEEEcchhC
Confidence 999999999999999999764
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.66 E-value=2.7e-16 Score=136.98 Aligned_cols=98 Identities=38% Similarity=0.544 Sum_probs=84.8
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V 334 (477)
.....|.|.|+|++|+||+..+..+.+||||++++.+. ....++|++++++.||+|||+|.|.+... ....|.|+|
T Consensus 20 Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v 99 (157)
T d1uowa_ 20 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTV 99 (157)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred EcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEE
Confidence 44567899999999999999998899999999998653 23346899999999999999999998754 256899999
Q ss_pred EecCCCCCCCeeEEEEEECccc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLL 356 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l 356 (477)
||++.++++++||++.+++...
T Consensus 100 ~d~~~~~~~~~iG~~~i~l~~~ 121 (157)
T d1uowa_ 100 LDYDKIGKNDAIGKVFVGYNST 121 (157)
T ss_dssp EECCSSSCCCEEEEEEEETTCC
T ss_pred cccCCCCCCceeEEEEEecccC
Confidence 9999999999999999999764
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=3.4e-16 Score=132.99 Aligned_cols=99 Identities=34% Similarity=0.456 Sum_probs=84.9
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V 334 (477)
.....|.|.|+|++|+||+..+..+.+||||++++.+. ...+++|+++++|.||.|||+|.|.+... ....|.|.|
T Consensus 10 Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v 89 (137)
T d2cm5a1 10 YSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISV 89 (137)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred EECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEe
Confidence 34567899999999999999888899999999998543 33456899999999999999999998643 356899999
Q ss_pred EecCCCCCCCeeEEEEEECcccC
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLT 357 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~ 357 (477)
||++..++|++||++.+++..+.
T Consensus 90 ~~~~~~~~~~~iG~~~i~l~~~~ 112 (137)
T d2cm5a1 90 WDYDIGKSNDYIGGCQLGISAKG 112 (137)
T ss_dssp EECCSSSCCEEEEEEEEETTCCH
T ss_pred eeCCCCCCCCEEEEEEeCccccC
Confidence 99999999999999999998653
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=1.1e-15 Score=127.04 Aligned_cols=110 Identities=20% Similarity=0.313 Sum_probs=87.2
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCC
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~ 342 (477)
.+.|.++.+..++. ..+.+||||++++.+.. ...++|+++++|+||+|||+|.|.+.+ .+.|.|.|||+|
T Consensus 6 ~~~~~~~~~~~~~~--~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~--~~~l~i~V~d~d---- 77 (123)
T d1bdya_ 6 RISFNSYELGSLQA--EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA---- 77 (123)
T ss_dssp EEEEEEEECCTTCC--CCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT--TCEEEEEEEEET----
T ss_pred EEEEEEeecccCCC--CCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc--ccEEEEEEEEcc----
Confidence 34455555655544 46899999999996532 223578999999999999999999975 468999999986
Q ss_pred CCeeEEEEEECcccC-----CCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 343 HDRLGMQLVPLKLLT-----PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 343 d~~lG~~~v~L~~l~-----~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
|+++|.+.+++.++. .+...+.|++|. ++|+|+++++|++
T Consensus 78 d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~------------~~Gkl~l~v~~f~ 122 (123)
T d1bdya_ 78 EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ------------PQAKVLMCVQYFL 122 (123)
T ss_dssp TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB------------SSCEEEEEEEEEE
T ss_pred ccccCccEEehhheeeccccCCCcccEEEeCC------------CCEEEEEEEEEec
Confidence 679999999998874 356778999863 4799999999986
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.57 E-value=2.9e-16 Score=134.88 Aligned_cols=110 Identities=36% Similarity=0.543 Sum_probs=90.0
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEeec--CCCCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v~~--~~~~~L~v~V 334 (477)
.....|.|.|+|++|+||+..+..+.+||||++++.+.. ..+++|+++++|.||.|||+|.|.+.. .....|.|.|
T Consensus 15 Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v 94 (145)
T d1dqva2 15 YLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAV 94 (145)
T ss_dssp EETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEE
T ss_pred EcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEE
Confidence 445679999999999999998888999999999997643 234689999999999999999998763 2356799999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~ 369 (477)
||++..++|++||++.++++.+... ....|+++.
T Consensus 95 ~d~~~~~~~~~iG~~~i~l~~~~~~-~~~~W~~l~ 128 (145)
T d1dqva2 95 VDYDCIGHNEVIGVCRVGPEAADPH-GREHWAEML 128 (145)
T ss_dssp EECCSSSCCEEEEECCCSSCTTCHH-HHHHHHTSS
T ss_pred EecCCCCCCcEEEEEEECchHcCch-hhHHHHHHH
Confidence 9999999999999999999876432 234565554
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=2e-12 Score=106.82 Aligned_cols=88 Identities=24% Similarity=0.455 Sum_probs=66.5
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEEcC---cccCceeee--eeCCCCCCeeeeE-EEE-EeecCCCCeEEEEEEec
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTG---EKLPWKKTT--VKKKNLNPEWNEN-FKL-VVKEPESQILQLQVFDW 337 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~---~~~~~~kT~--v~~~t~nP~WnE~-f~f-~v~~~~~~~L~v~V~d~ 337 (477)
.|.|+|++|++|+.+ +.||||++++-+ +...+++|+ +..++.||.|||+ |.| .+..++...|+|.|||+
T Consensus 2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~ 77 (122)
T d2zkmx2 2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE 77 (122)
T ss_dssp EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence 589999999999864 479999999943 112223333 3478999999976 444 34444556899999998
Q ss_pred CCCCCCCeeEEEEEECcccCCCC
Q 011813 338 DKVGGHDRLGMQLVPLKLLTPHE 360 (477)
Q Consensus 338 d~~~~d~~lG~~~v~L~~l~~~~ 360 (477)
| |++||++.+||+.+..+.
T Consensus 78 d----~~~lG~~~ipl~~l~~Gy 96 (122)
T d2zkmx2 78 G----NKFLGHRIIPINALNSGY 96 (122)
T ss_dssp T----TEEEEEEEEEGGGBCCEE
T ss_pred C----CCEEEEEEEEcccCcCCc
Confidence 5 789999999999998763
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.15 E-value=1.7e-11 Score=102.44 Aligned_cols=64 Identities=27% Similarity=0.329 Sum_probs=55.6
Q ss_pred ccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc-
Q 011813 381 KQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK- 456 (477)
Q Consensus 381 ~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~- 456 (477)
.+.|+|+++++|.| ..+.|.|.|++|+||+. .+.+||||++++.
T Consensus 2 ~p~G~l~~sl~y~~--------------------------------~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~ 49 (130)
T d1dqva1 2 APCGRISFALRYLY--------------------------------GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLP 49 (130)
T ss_dssp CSSCEEEEEEECCS--------------------------------SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTT
T ss_pred CCcEEEEEEEEEEC--------------------------------CCCEEEEEEEeeeCCccccCCCCcceEEEEEEcc
Confidence 46799999999987 67899999999999986 4689999999994
Q ss_pred --CeEeeeeeeeeccCccceec
Q 011813 457 --GDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 457 --~~~~kTkv~~~t~~P~~~~~ 476 (477)
.++.||+++++|.+|.||+.
T Consensus 50 ~~~~~~kT~v~~~t~~P~wne~ 71 (130)
T d1dqva1 50 DRKKKFQTKVHRKTLNPIFNET 71 (130)
T ss_dssp STTSCEECCCCCSCSSCEEEEE
T ss_pred CCCceEeceeEcCCCCeeeeeE
Confidence 35569999999999999854
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.10 E-value=5.2e-11 Score=100.23 Aligned_cols=62 Identities=24% Similarity=0.363 Sum_probs=54.4
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc---
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK--- 456 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~--- 456 (477)
+|+|+++++|.| ..+.|.|.|++|+||+. .+.+||||++++.
T Consensus 1 rG~l~l~l~Y~~--------------------------------~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~ 48 (137)
T d2cm5a1 1 RGKILVSLMYST--------------------------------QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDM 48 (137)
T ss_dssp CCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC-
T ss_pred CcEEEEEEEEEC--------------------------------CCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCC
Confidence 699999999997 67899999999999985 4689999999983
Q ss_pred --CeEeeeeeeeeccCccceec
Q 011813 457 --GDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 457 --~~~~kTkv~~~t~~P~~~~~ 476 (477)
..++||+++++|.+|.||..
T Consensus 49 ~~~~~~kT~v~~~t~~P~wne~ 70 (137)
T d2cm5a1 49 GKKAKHKTQIKKKTLNPEFNEE 70 (137)
T ss_dssp --CCEEECCCCCSCSSCEEEEE
T ss_pred ccceeecCEeEcCCCCCccceE
Confidence 35569999999999999964
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.07 E-value=7e-11 Score=100.29 Aligned_cols=66 Identities=24% Similarity=0.278 Sum_probs=55.6
Q ss_pred CCccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEE
Q 011813 379 DMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILY 455 (477)
Q Consensus 379 ~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l 455 (477)
.....|+|++++.|.+ ..+.|.|+|++|+||+. .+.+||||++++
T Consensus 16 ~~~~~G~l~~sl~y~~--------------------------------~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l 63 (143)
T d1rsya_ 16 EEEKLGKLQYSLDYDF--------------------------------QNNQLLVGIIQAAELPALDMGGTSDPYVKVFL 63 (143)
T ss_dssp --CCCCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEE
T ss_pred chhcceEEEEEEEEeC--------------------------------CCCEEEEEEEEccCCCCCCCCCCCCeEEEEEE
Confidence 3557899999999986 56799999999999986 468999999999
Q ss_pred ---cCeEeeeeeeeeccCccceec
Q 011813 456 ---KGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 456 ---~~~~~kTkv~~~t~~P~~~~~ 476 (477)
+.++.||+++++|.+|.||..
T Consensus 64 ~~~~~~~~kT~~~~~t~~P~wne~ 87 (143)
T d1rsya_ 64 LPDKKKKFETKVHRKTLNPVFNEQ 87 (143)
T ss_dssp ETTCCSCEECCCCTTCSSCEEEEE
T ss_pred cCCCCeeEEEEEeccccCcceeee
Confidence 345569999999999999964
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.07 E-value=6.4e-11 Score=99.90 Aligned_cols=62 Identities=24% Similarity=0.342 Sum_probs=51.8
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc--C
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK--G 457 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~--~ 457 (477)
+|+|+++++|.| ..+.|.|+|++|+||+. .+.+||||++++. +
T Consensus 1 rG~l~~sl~Y~~--------------------------------~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~ 48 (138)
T d1w15a_ 1 RGELLVSLCYQS--------------------------------TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAK 48 (138)
T ss_dssp CCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCC------CCCEEEEEEEEETT
T ss_pred CcEEEEEEEEcC--------------------------------CCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCc
Confidence 699999999998 57899999999999986 4679999999982 2
Q ss_pred ---eEeeeeeeeeccCccceec
Q 011813 458 ---DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 ---~~~kTkv~~~t~~P~~~~~ 476 (477)
.++||+++++|.||.||..
T Consensus 49 ~~~~~~kT~~~~~t~~P~wne~ 70 (138)
T d1w15a_ 49 KRISKKKTHVKKCTPNAVFNEL 70 (138)
T ss_dssp EEEEEEECCCCCSCSSEEEEEE
T ss_pred ccCccccceeECCCCCCeECcE
Confidence 3448999999999999964
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=1e-10 Score=96.86 Aligned_cols=61 Identities=26% Similarity=0.397 Sum_probs=53.3
Q ss_pred eEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEE-----
Q 011813 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILY----- 455 (477)
Q Consensus 384 G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l----- 455 (477)
|+|++++.|.| ..+.|.|+|++|+||+. .+.+||||++++
T Consensus 1 G~l~l~l~y~~--------------------------------~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~ 48 (125)
T d2bwqa1 1 GQLSIKLWFDK--------------------------------VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRS 48 (125)
T ss_dssp CEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCS
T ss_pred CEEEEEEEEEC--------------------------------CCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCC
Confidence 89999999987 56799999999999986 468999999998
Q ss_pred cCeEeeeeeeeeccCccceec
Q 011813 456 KGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 456 ~~~~~kTkv~~~t~~P~~~~~ 476 (477)
...++||+++++|.+|.||..
T Consensus 49 ~~~~~kT~~~~~t~~P~wne~ 69 (125)
T d2bwqa1 49 DKNKRRTKTVKKTLEPKWNQT 69 (125)
T ss_dssp GGGEEECCCCSSBSSCEEEEE
T ss_pred CccccccCEEcCCCCCEEccE
Confidence 335569999999999999854
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.04 E-value=1.1e-10 Score=99.37 Aligned_cols=65 Identities=26% Similarity=0.435 Sum_probs=56.4
Q ss_pred CccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc
Q 011813 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK 456 (477)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~ 456 (477)
....|+|+++++|.| ..|.|.|.|++|+||+. .+.+||||++++.
T Consensus 3 ~~~~G~l~~sl~Y~~--------------------------------~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~ 50 (145)
T d1dqva2 3 KADLGELNFSLCYLP--------------------------------TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLI 50 (145)
T ss_dssp CSCCCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCC
T ss_pred cCcceEEEEEEEEcC--------------------------------CCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEc
Confidence 467899999999998 67899999999999975 4678999999986
Q ss_pred Ce-----EeeeeeeeeccCccceec
Q 011813 457 GD-----KKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 457 ~~-----~~kTkv~~~t~~P~~~~~ 476 (477)
+. ++||+++++|.+|.||..
T Consensus 51 ~~~~~~~~~kT~~~~~t~~P~wne~ 75 (145)
T d1dqva2 51 SEGRRLKKRKTSIKKNTLNPTYNEA 75 (145)
T ss_dssp TTCCTTSCEECCCCCSCSSCEEEEC
T ss_pred cCCccceeecCEEEeCCCCceecce
Confidence 42 458999999999999964
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=1.8e-10 Score=97.01 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=55.4
Q ss_pred CccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCCC----CCCCcEEEEEE
Q 011813 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----NHNNPYAIILY 455 (477)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~~----~~~DPyvkv~l 455 (477)
....|+|++++.|.+ ..+.|.|+|++|+||+.. +.+||||++++
T Consensus 5 ~~~~G~l~~sl~Y~~--------------------------------~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l 52 (138)
T d1ugka_ 5 SSGLGTLFFSLEYNF--------------------------------ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTI 52 (138)
T ss_dssp CCCCCEEEEEEEEEG--------------------------------GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEE
T ss_pred CCCCEEEEEEEEEeC--------------------------------CCCEEEEEEEEecCCCCCCCCCCccceEEEEEE
Confidence 456899999999987 567899999999999862 35899999999
Q ss_pred ---cCeEeeeeeeeeccCccceec
Q 011813 456 ---KGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 456 ---~~~~~kTkv~~~t~~P~~~~~ 476 (477)
+.++.||++++++.||.||..
T Consensus 53 ~~~~~~~~kT~v~~~t~nP~wne~ 76 (138)
T d1ugka_ 53 LPEKKHKVKTRVLRKTLDPAFDET 76 (138)
T ss_dssp ETTTCSEEECCCCSSCSSCEEEEE
T ss_pred cCCCCEeEeCeeEeCCCCCceeeE
Confidence 445569999999999999964
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.02 E-value=1.7e-10 Score=96.41 Aligned_cols=49 Identities=22% Similarity=0.287 Sum_probs=42.7
Q ss_pred ceEEEEEEeeeecCCC---CCCCCcEEEEEE-----cCeEeeeeeeeeccCccceec
Q 011813 428 AGLLSVLVQGAEDVEG---ENHNNPYAIILY-----KGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 428 ~g~L~V~V~~A~~L~~---~~~~DPyvkv~l-----~~~~~kTkv~~~t~~P~~~~~ 476 (477)
.+.|.|+|++|+||+. .+.+||||++++ +..++||+++++|.||.||..
T Consensus 14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~ 70 (132)
T d1a25a_ 14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNET 70 (132)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEE
T ss_pred CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceE
Confidence 4689999999999986 468999999999 456679999999999999853
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=5.2e-10 Score=94.15 Aligned_cols=66 Identities=17% Similarity=-0.001 Sum_probs=56.9
Q ss_pred CCccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCCCCCCCcEEEEEEcC-
Q 011813 379 DMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKG- 457 (477)
Q Consensus 379 ~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~~~~~DPyvkv~l~~- 457 (477)
+.+..|+|++++.|.+ ..+.|.|+|++|+||+..+.+||||++++.+
T Consensus 8 s~~~~~~l~~sl~y~~--------------------------------~~~~L~V~v~~a~~L~~~g~~dpyVkv~l~~~ 55 (138)
T d1wfma_ 8 SWNQAPKLHYCLDYDC--------------------------------QKAELFVTRLEAVTSNHDGGCDCYVQGSVANR 55 (138)
T ss_dssp CCSSCCEEEEEEEEET--------------------------------TTTEEEEEEEEEECCCCSSCCCEEEEEEEEET
T ss_pred CCCcCCEEEEEEEECC--------------------------------CCCEEEEEEEEcCCCCCCCCcCcEEEEEECCC
Confidence 3556799999999986 5679999999999999888999999999953
Q ss_pred ---eEeeeeeeeeccCccceec
Q 011813 458 ---DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 ---~~~kTkv~~~t~~P~~~~~ 476 (477)
.++||++++++.+|.||..
T Consensus 56 ~~~~~~kT~v~~~~~~P~wne~ 77 (138)
T d1wfma_ 56 TGSVEAQTALKKRQLHTTWEEG 77 (138)
T ss_dssp TEEEEEECCCCCCCSSEECSSC
T ss_pred CCccceeeeEECCCCCceEeee
Confidence 2358999999999999954
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.95 E-value=4.2e-10 Score=96.96 Aligned_cols=65 Identities=29% Similarity=0.456 Sum_probs=55.6
Q ss_pred CccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc
Q 011813 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK 456 (477)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~ 456 (477)
....|+|.++++|.| ..++|.|.|++|+||+. .+.+||||++++.
T Consensus 8 ~~~~G~l~~sl~Y~~--------------------------------~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~ 55 (157)
T d1uowa_ 8 LEKLGDICFSLRYVP--------------------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLM 55 (157)
T ss_dssp GGCCCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEE
T ss_pred ceeeeEEEEEEEEcC--------------------------------CCCEEEEEEEEEEEcccccCCCCCCeeEEEEEe
Confidence 456899999999998 57899999999999985 4689999999984
Q ss_pred C-----eEeeeeeeeeccCccceec
Q 011813 457 G-----DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 457 ~-----~~~kTkv~~~t~~P~~~~~ 476 (477)
. .++||+++++|.||.||..
T Consensus 56 ~~~~~~~~~kT~v~~~t~nP~wne~ 80 (157)
T d1uowa_ 56 QNGKRLKKKKTTIKKNTLNPYYNES 80 (157)
T ss_dssp ETTEEEEEEECCCCCSCSSCEEEEE
T ss_pred cCCccccceecccccCCCCcccCCe
Confidence 3 3348999999999999954
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=3.4e-10 Score=93.73 Aligned_cols=50 Identities=20% Similarity=0.361 Sum_probs=46.3
Q ss_pred cceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
..|.|+|+|++|+||+. .|.+||||+++++++++||+++++|.||.||.+
T Consensus 4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~ 56 (126)
T d2ep6a1 4 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKV 56 (126)
T ss_dssp CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEE
T ss_pred ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEE
Confidence 57999999999999986 468999999999999999999999999999965
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.89 E-value=2.1e-10 Score=96.96 Aligned_cols=63 Identities=21% Similarity=0.266 Sum_probs=52.4
Q ss_pred CccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc
Q 011813 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK 456 (477)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~ 456 (477)
....|+|++++.|. .|.|.|.|++|+||+. .+.+||||++++.
T Consensus 3 ~p~~G~l~lsl~y~----------------------------------~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~ 48 (142)
T d1rh8a_ 3 HPITGEIQLQINYD----------------------------------LGNLIIHILQARNLVPRDNNGYSDPFVKVYLL 48 (142)
T ss_dssp CCCCCEEEEEEEEE----------------------------------TTEEEEEEEEEESCCCCSSSSCSCCEEEEEET
T ss_pred CCcceEEEEEEEEe----------------------------------CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEe
Confidence 45689999999994 3679999999999986 4689999999983
Q ss_pred C--------------eEeeeeeeeeccCccceec
Q 011813 457 G--------------DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 457 ~--------------~~~kTkv~~~t~~P~~~~~ 476 (477)
+ +++||+++++|.||.||..
T Consensus 49 ~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~ 82 (142)
T d1rh8a_ 49 PGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQT 82 (142)
T ss_dssp TSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEE
T ss_pred cCcccccccccCCCceeeeccCCcCCCCceeEEE
Confidence 2 2348999999999999954
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=5.2e-09 Score=86.24 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=43.6
Q ss_pred cceEEEEEEeeeecCCC------CCCCCcEEEEEEcC---eEeeeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEG------ENHNNPYAIILYKG---DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~------~~~~DPyvkv~l~~---~~~kTkv~~~t~~P~~~~~ 476 (477)
++++|+|+|++|+||+. .+.+||||++++++ +++||+++++|.||.||.+
T Consensus 1 ss~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~ 59 (126)
T d1rlwa_ 1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNET 59 (126)
T ss_dssp CCEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEE
T ss_pred CCcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceecee
Confidence 36899999999999985 26899999999976 5669999999999999964
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=98.63 E-value=1.3e-08 Score=85.08 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=44.7
Q ss_pred cceEEEEEEeeeecCCC--------------CCCCCcEEEEEEcCeEe-eeeeeeeccCccceecC
Q 011813 427 GAGLLSVLVQGAEDVEG--------------ENHNNPYAIILYKGDKK-RTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~--------------~~~~DPyvkv~l~~~~~-kTkv~~~t~~P~~~~~~ 477 (477)
-+|.|+|.|.+|+||++ .+.+||||++++++++. ||+++++|.+|.||+++
T Consensus 4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f 69 (136)
T d1gmia_ 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEF 69 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEE
T ss_pred EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEE
Confidence 58999999999999974 35799999999998775 89999999999999753
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.63 E-value=1.1e-08 Score=84.56 Aligned_cols=48 Identities=19% Similarity=0.122 Sum_probs=43.2
Q ss_pred eEEEEEEeeeecCCCCCCCCcEEEEEEcCeEeeeeeeeeccCccceecC
Q 011813 429 GLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 429 g~L~V~V~~A~~L~~~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~~ 477 (477)
+.|.|+|.+|++|++++..||||++.+++.+.+|++++ +.||.||..+
T Consensus 2 ~~L~V~v~~a~~l~~~~~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f 49 (128)
T d2cjta1 2 SLLCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDF 49 (128)
T ss_dssp EEEEEEEEEEECSSCGGGCEEEEEEEETTEEEECCCEE-SSSCEEEEEE
T ss_pred eEEEEEEEEEECCCCCCCcCeEEEEEeCCEEEEEEEec-CCCCeEEEEE
Confidence 68999999999999988999999999999999999886 5599999653
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=1.3e-08 Score=84.79 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=44.6
Q ss_pred ceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 428 AGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 428 ~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
.+.|.|+|.+|++|+. .+.+||||++.+++++.||+++++|.||.||..
T Consensus 5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~ 56 (133)
T d2nq3a1 5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQP 56 (133)
T ss_dssp CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEE
T ss_pred ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcce
Confidence 4789999999999986 357999999999999999999999999999964
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.61 E-value=1e-08 Score=85.74 Aligned_cols=50 Identities=18% Similarity=0.326 Sum_probs=45.2
Q ss_pred cceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeee-eccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSF-LSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~-~t~~P~~~~~ 476 (477)
..|.|+|+|++|+||+. .+.+||||++++++++++|++++ ++.||.||.+
T Consensus 8 p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~ 61 (136)
T d1wfja_ 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNET 61 (136)
T ss_dssp CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEE
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeE
Confidence 57999999999999986 37899999999999999999987 6899999965
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.41 E-value=1.1e-07 Score=78.70 Aligned_cols=48 Identities=13% Similarity=0.167 Sum_probs=38.3
Q ss_pred eEEEEEEeeeecCCC-----CCCCCcEEEEEEc-----CeEeeeeeeeec-cCccceec
Q 011813 429 GLLSVLVQGAEDVEG-----ENHNNPYAIILYK-----GDKKRTKVSFLS-LLYTYSLQ 476 (477)
Q Consensus 429 g~L~V~V~~A~~L~~-----~~~~DPyvkv~l~-----~~~~kTkv~~~t-~~P~~~~~ 476 (477)
.+|+|.|++|+||+. ++.+||||++++. .+++||++++++ +||.||+.
T Consensus 4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~ 62 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDME 62 (131)
T ss_dssp EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEE
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEE
Confidence 589999999999973 3579999999984 366699988755 79999964
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.07 E-value=9.7e-07 Score=71.93 Aligned_cols=47 Identities=9% Similarity=0.109 Sum_probs=36.3
Q ss_pred EEEEEEeeeecCCC-CCCCCcEEEEEEcCe-----EeeeeeeeeccCccceec
Q 011813 430 LLSVLVQGAEDVEG-ENHNNPYAIILYKGD-----KKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 430 ~L~V~V~~A~~L~~-~~~~DPyvkv~l~~~-----~~kTkv~~~t~~P~~~~~ 476 (477)
++.|.++.+..++. .+.+||||+|++++. +++|+++++|+||.||..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~ 58 (123)
T d1bdya_ 6 RISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKST 58 (123)
T ss_dssp EEEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCE
T ss_pred EEEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceE
Confidence 45566666666654 578999999999653 347999999999999964
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=9.7e-06 Score=65.66 Aligned_cols=46 Identities=22% Similarity=0.192 Sum_probs=35.5
Q ss_pred EEEEEEeeeecCCCCCCCCcEEEEEEcC------eEeeeeee--eeccCccceec
Q 011813 430 LLSVLVQGAEDVEGENHNNPYAIILYKG------DKKRTKVS--FLSLLYTYSLQ 476 (477)
Q Consensus 430 ~L~V~V~~A~~L~~~~~~DPyvkv~l~~------~~~kTkv~--~~t~~P~~~~~ 476 (477)
.|+|.|.+|++|+.. .+||||++.+-+ ++.||++. .+++||.||.+
T Consensus 2 tl~V~Visaq~L~~~-~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~ 55 (122)
T d2zkmx2 2 TLSITVISGQFLSER-SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEE 55 (122)
T ss_dssp EEEEEEEEEESCCSS-CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCC
T ss_pred EEEEEEEEeeCCCCC-CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEccc
Confidence 489999999999864 699999999832 33355543 57899999854
|