Citrus Sinensis ID: 011814

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------
MFQRTCIVLISLLSSFSPQGRAMLNLTFPIPHPNPEDVAQDVHRRVNASVSRRQMLQISEKDQSPAATCFTGNPIDDCWKCDPDWANNRQRLADCVIGFGQYAMGGKGGEYYIVTDSSDDDAVSPKPGTLRYAVIQPQPLWIVFPSNMLIKLSQELIFNSYKTLDGRGANVHITGGGCITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIFGSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTEWEMYAIGGSGNPTINSQGNRYTAPTNRNAKEVTKRVDTAESHWRDWNWRSEGDVMVNGAFFVASGAGVEVKYERAFSVEPKSAELIEQLTWHSGVLGVGGRDNNLGMWSRGPNDGEAGFDSFDSGSKKSLTASSIYAIFPFLTAISCFLFLYTRSMTFML
ccccHHHHHHHHHHcccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccEEEEEcccccccccccccHHHHHHHcccccEEEEEEccEEEEEccEEEEccccEEEccccEEEEEEccEEEEEEEEEEEEEcEEEEcEEccccccccccccccccccccccccEEEEccccEEEEcccccccccccEEEEEccEEEEEEcEEEEccccccccccccccccccccEEEEEEcccccccccccccccccEEEEEEcEEEccccEEEEcccccEEEEEcEEEEcccccccccEEEEEccccccccccEEEEcccEEcccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHEEEHHHHHEEEEEcccEEcc
cccHHHEHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccEEEEEEccccccccccccccEEEEEEEcccEEEEEcccEEEEEccEEEEEccccEccccEEEEEEcccEEEEEEEEEEEEEcEEEEEcccccccEEEcccccccccccccccEEEEEccccEEEEcccccccccccEEEEcccEEEEEEccEEEEEEEccEEccccccHHHcccccEEEEccEEEEEEEcccEEcccEEEEEccccccEEEEEEcccccccEEccccEEEccccccccEEEEEccccccccccccEEccccEEEcccEEEccccccccccccccccccccHHHHHHHHHcccccccccccccccEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcc
MFQRTCIVLISLLssfspqgramlnltfpiphpnpedvaQDVHRRVNASVSRRQMLQisekdqspaatcftgnpiddcwkcdpdwannRQRLADCVIGfgqyamggkggEYYIVtdssdddavspkpgtlryaviqpqplwivfpsnMLIKLSQELIFNSYktldgrganvhitgGGCITLQYISNVIIHNIHIHHcvesgnanvrsspthygyrtksdgdgisifgskdlwidhcslshckdglidavmgstgitisnnyfshHNEVMLlghsddylpdsgmQVTIAFNHFGEKLVQrmprcrrgyihvvnndftEWEMYAiggsgnptinsqgnrytaptnrnakEVTKRVDTAeshwrdwnwrsegdvmvnGAFFvasgagvevkyerafsvepkSAELIEQLTWhsgvlgvggrdnnlgmwsrgpndgeagfdsfdsgskksltasSIYAIFPFLTAISCFLFLYTRSMTFML
MFQRTCIVLISLLSSFSPQGRAMLNLTFPIPHPNPEDVAQDVHRRVNASVSRRQMlqisekdqspaatCFTGNPIDDCWKCDPDWANNRQRLADCVIGFGQYAMGGKGGEYYIVTDSSDDDAVSPKPGTLRYAVIQPQPLWIVFPSNMLIKLSQELIFNSYKTLDGRGANVHITGGGCITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIFGSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTEWEMYAIGGSGNPTINSQGNRytaptnrnakevtkrvdtaeshwrdwnwrsegdVMVNGAFFVASGAGVEVKYERAFSVEPKSAELIEQLTWHSGVLGVGGRDNNLGMWSRGPNDGEAGFDSFDSGSKKSLTASSIYAIFPFLTAISCFLFLYTRSMTFML
MFQRTCIVLISLLSSFSPQGRAMLNLTFPIPHPNPEDVAQDVHRRVNASVSRRQMLQISEKDQSPAATCFTGNPIDDCWKCDPDWANNRQRLADCVIGFGQYAMGGKGGEYYIVTDSSDDDAVSPKPGTLRYAVIQPQPLWIVFPSNMLIKLSQELIFNSYKTLDGRGANVHITGGGCITLQYISNViihnihihhCVESGNANVRSSPTHYGYRTKSDGDGISIFGSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTEWEMYAIGGSGNPTINSQGNRYTAPTNRNAKEVTKRVDTAESHWRDWNWRSEGDVMVNGAFFVASGAGVEVKYERAFSVEPKSAELIEQLTWHSGVLGVGGRDNNLGMWSRGPNDGEAGFDSFDSGSKKSLTASSIYAIFPFLTAISCFLFLYTRSMTFML
***RTCIVLISLLSSFSPQGRAMLNLTFP*************************************ATCFTGNPIDDCWKCDPDWANNRQRLADCVIGFGQYAMGGKGGEYYIVTD***********GTLRYAVIQPQPLWIVFPSNMLIKLSQELIFNSYKTLDGRGANVHITGGGCITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIFGSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTEWEMYAIGGS****************************TAESHWRDWNWRSEGDVMVNGAFFVASGAGVEVKYERAFSVEPKSAELIEQLTWHSGVLGVGGRDNNLGMW**********************TASSIYAIFPFLTAISCFLFLYTRSMT***
**QRTCIVLISLLSSFSPQGRAML*LTFPIPHPNPEDVAQDVHRRVNA********************CFTGNPIDDCWKCDPDWANNRQRLADCVIGFGQYAMGGKGGEYYIVTDSSDDDAVSPKPGTLRYAVIQPQPLWIVFPSNMLIKLSQELIFNSYKTLDGRGANVHITGGGCITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIFGSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTEWEMYAIGGSGNPTINSQGNRYTAPTNRNAKEVTKRVDTAESHWRDWNWRSEGDVMVNGAFFVASGAGVEVKYERAFSVEPKSAELIEQLTWHSGVLGVGGRDNNLGMWSRGPNDGEAG*****S***KSLTASSIYAIFPFLTAISCFLFLYTRSMTFML
MFQRTCIVLISLLSSFSPQGRAMLNLTFPIPHPNPEDVAQDVHRRVNASVSRRQMLQISEKDQSPAATCFTGNPIDDCWKCDPDWANNRQRLADCVIGFGQYAMGGKGGEYYIVTDSSDDDAVSPKPGTLRYAVIQPQPLWIVFPSNMLIKLSQELIFNSYKTLDGRGANVHITGGGCITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIFGSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTEWEMYAIGGSGNPTINSQGNRYTAPTNR**************HWRDWNWRSEGDVMVNGAFFVASGAGVEVKYERAFSVEPKSAELIEQLTWHSGVLGVGGRDNNLGMWSRGPNDGEAGFDSFDSGSKKSLTASSIYAIFPFLTAISCFLFLYTRSMTFML
MFQRTCIVLISLLSSFSPQGRAMLNLTFPIPHPNPEDVAQDVHRRVNASVSRRQMLQISEKDQSPAATCFTGNPIDDCWKCDPDWANNRQRLADCVIGFGQYAMGGKGGEYYIVTDSSDDDAVSPKPGTLRYAVIQPQPLWIVFPSNMLIKLSQELIFNSYKTLDGRGANVHITGGGCITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIFGSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTEWEMYAIGGSGNPTINSQGNRYTAPTNRNAKEVTKRVDTAESHWRDWNWRSEGDVMVNGAFFVASGA*VEVK**RAFSVEPKSAELIEQLTWHSGVLGVGGRDNNLGMWSRGP**********DSGSKKSLTASSIYAIFPFLTAISCFLFLYTRSMTFML
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiii
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFQRTCIVLISLLSSFSPQGRAMLNLTFPIPHPNPEDVAQDVHRRVNASVSRRQMLQISEKDQSPAATCFTGNPIDDCWKCDPDWANNRQRLADCVIGFGQYAMGGKGGEYYIVTDSSDDDAVSPKPGTLRYAVIQPQPLWIVFPSNMLIKLSQELIFNSYKTLDGRGANVHITGGGCITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIFGSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTEWEMYAIGGSGNPTINSQGNRYTAPTNRNAKEVTKRVDTAESHWRDWNWRSEGDVMVNGAFFVASGAGVEVKYERAFSVEPKSAELIEQLTWHSGVLGVGGRDNNLGMWSRGPNDGEAGFDSFDSGSKKSLTASSIYAIFPFLTAISCFLFLYTRSMTFML
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query477 2.2.26 [Sep-21-2011]
Q9SCP2483 Probable pectate lyase 12 yes no 0.995 0.983 0.727 0.0
Q93Z04501 Probable pectate lyase 13 no no 0.811 0.772 0.657 1e-155
Q944R1470 Probable pectate lyase 15 no no 0.756 0.768 0.644 1e-147
Q93Z25432 Probable pectate lyase 22 no no 0.786 0.868 0.606 1e-146
Q940Q1431 Probable pectate lyase 1 no no 0.786 0.870 0.639 1e-143
Q9FXD8408 Probable pectate lyase 5 no no 0.779 0.911 0.621 1e-142
Q9LJ42440 Probable pectate lyase 10 no no 0.777 0.843 0.626 1e-140
Q9M8Z8416 Probable pectate lyase 8 no no 0.777 0.891 0.621 1e-140
Q9C5M8408 Probable pectate lyase 18 no no 0.800 0.936 0.617 1e-138
Q9SVQ6438 Putative pectate lyase 14 no no 0.779 0.849 0.639 1e-136
>sp|Q9SCP2|PLY12_ARATH Probable pectate lyase 12 OS=Arabidopsis thaliana GN=At3g53190 PE=2 SV=2 Back     alignment and function desciption
 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/484 (72%), Positives = 403/484 (83%), Gaps = 9/484 (1%)

Query: 1   MFQRTCIVLISLLSSFSPQGR-AMLNLTFP-IPHPNPEDVAQDVHRRVNASVSRRQMLQI 58
           M QR+CIVL   L    PQ   +MLN T   IPHP+PE VA  V  +VNAS++RRQ L  
Sbjct: 2   MLQRSCIVLFFSLFLLVPQMVFSMLNRTLLLIPHPDPELVAYQVQWKVNASITRRQALDT 61

Query: 59  SEKDQSPAATCFTGNPIDDCWKCDPDWANNRQRLADCVIGFGQYAMGGKGGEYYIVTDSS 118
           +  DQ+ +  C TGNPIDDCWKCDP+W NNRQ LADC IGFGQYA+GGKGG++Y VTDSS
Sbjct: 62  T--DQAGSTPCITGNPIDDCWKCDPNWPNNRQGLADCGIGFGQYALGGKGGQFYFVTDSS 119

Query: 119 DDDAVSPKPGTLRYAVIQPQPLWIVFPSNMLIKLSQELIFNSYKTLDGRGANVHITGGGC 178
           DDDAV+PKPGTLRY VIQ +PLWIVFPSNM+IKL QELIFNSYKTLDGRGANVHI GGGC
Sbjct: 120 DDDAVNPKPGTLRYGVIQEEPLWIVFPSNMMIKLKQELIFNSYKTLDGRGANVHIVGGGC 179

Query: 179 ITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIFGSKDLWIDHCSL 238
           ITLQY+SN+IIHNIHIHHC +SGN NVRSSPTHYG+RTKSDGDGISIFGSKD+WIDHCSL
Sbjct: 180 ITLQYVSNIIIHNIHIHHCYQSGNTNVRSSPTHYGFRTKSDGDGISIFGSKDIWIDHCSL 239

Query: 239 SHCKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQ 298
           S CKDGLIDAVMGSTGITISNN+FSHHNEVMLLGHSD Y PDSGMQVTIAFNHFGEKL+Q
Sbjct: 240 SRCKDGLIDAVMGSTGITISNNFFSHHNEVMLLGHSDHYEPDSGMQVTIAFNHFGEKLIQ 299

Query: 299 RMPRCRRGYIHVVNNDFTEWEMYAIGGSGNPTINSQGNRYTAPTNRNAKEVTKRVDTAES 358
           RMPRCRRGYIHVVNNDFT+WEMYAIGGSGNPTINSQGNRYTAPTN  AKEVTKRV+T + 
Sbjct: 300 RMPRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPTNPFAKEVTKRVETPDG 359

Query: 359 HWRDWNWRSEGDVMVNGAFFVASGAGVEVKYERAFSVEPKSAELIEQLTWHSGVLGVGGR 418
            W+ WNWRSEGD++VNGAFFVASG G E++YE+A+SVEPKSA  I Q+T+HSGVLGVGGR
Sbjct: 360 DWKGWNWRSEGDILVNGAFFVASGEGAEMRYEKAYSVEPKSASFITQITFHSGVLGVGGR 419

Query: 419 DNNLGMWSRGPNDGEAGFDSFDSGSKKSLTASSI----YAIFPFLTAISCFLFLYTRS-M 473
           +NNLGMW+   ++G +G DS++  + +   A S     +++  FL +   +L ++T S  
Sbjct: 420 NNNLGMWTTTGSEGTSGLDSYNDYTDEMSGAGSTNRLSFSVLVFLLSSISYLVVFTSSTQ 479

Query: 474 TFML 477
            FML
Sbjct: 480 MFML 483

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: 2
>sp|Q93Z04|PLY13_ARATH Probable pectate lyase 13 OS=Arabidopsis thaliana GN=PMR6 PE=1 SV=1 Back     alignment and function description
>sp|Q944R1|PLY15_ARATH Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1 Back     alignment and function description
>sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1 Back     alignment and function description
>sp|Q940Q1|PLY1_ARATH Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2 Back     alignment and function description
>sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2 Back     alignment and function description
>sp|Q9LJ42|PLY10_ARATH Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2 Back     alignment and function description
>sp|Q9M8Z8|PLY8_ARATH Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1 Back     alignment and function description
>sp|Q9C5M8|PLY18_ARATH Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2 Back     alignment and function description
>sp|Q9SVQ6|PLY14_ARATH Putative pectate lyase 14 OS=Arabidopsis thaliana GN=At4g13210 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query477
255556854483 Pectate lyase precursor, putative [Ricin 0.993 0.981 0.800 0.0
449451058480 PREDICTED: probable pectate lyase 12-lik 0.888 0.883 0.826 0.0
297816618484 hypothetical protein ARALYDRAFT_485694 [ 0.993 0.979 0.728 0.0
21537059482 pectate lyase-like protein [Arabidopsis 0.995 0.985 0.727 0.0
18409790483 putative pectate lyase 12 [Arabidopsis t 0.995 0.983 0.727 0.0
356503736470 PREDICTED: probable pectate lyase 12-lik 0.920 0.934 0.786 0.0
225441163 583 PREDICTED: probable pectate lyase 12 [Vi 0.882 0.722 0.807 0.0
315272014489 pectate lyase-like protein 3 [Vitis vini 0.882 0.860 0.807 0.0
6630739463 pectate lyase-like protein [Arabidopsis 0.951 0.980 0.740 0.0
356546020477 PREDICTED: probable pectate lyase 12-lik 0.964 0.964 0.730 0.0
>gi|255556854|ref|XP_002519460.1| Pectate lyase precursor, putative [Ricinus communis] gi|223541323|gb|EEF42874.1| Pectate lyase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  758 bits (1957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/486 (80%), Positives = 421/486 (86%), Gaps = 12/486 (2%)

Query: 1   MFQRTCIVLISLLSSFSPQGRAMLNLTFPIPHPNPEDVAQDVHRRVNASVSRRQMLQISE 60
           M   + IVLI LLSSFS  G AM NLTFP PHPNPE V QDV RRVNAS+SRRQMLQIS+
Sbjct: 1   MLHISYIVLILLLSSFSSFGLAMWNLTFPTPHPNPEQVVQDVQRRVNASMSRRQMLQISQ 60

Query: 61  KDQSPAATCFTGNPIDDCWKCDPDWANNRQRLADCVIGFGQYAMGGKGGEYYIVTDSSDD 120
           KDQ+   TC TGNPIDDCWKCDPDW NNRQRLADC IGFGQYAMGGK GEYYIVTDSSDD
Sbjct: 61  KDQT---TCQTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQYAMGGKNGEYYIVTDSSDD 117

Query: 121 DAVSPKPGTLRYAVIQPQPLWIVFPSNMLIKLSQELIFNSYKTLDGRGANVHITGGGCIT 180
           DAV+PKPGTLRYAVIQ +PLWIVFPSNMLIKL +ELIFNSYKTLDGRGANVHI GGGCIT
Sbjct: 118 DAVNPKPGTLRYAVIQEEPLWIVFPSNMLIKLKEELIFNSYKTLDGRGANVHIVGGGCIT 177

Query: 181 LQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIFGSKDLWIDHCSLSH 240
           LQYISNVIIHNIHIHHCV+SG+ NVRSSPTHYGYRTKSDGDGISIFGSKD+WIDHCSLSH
Sbjct: 178 LQYISNVIIHNIHIHHCVQSGDTNVRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSH 237

Query: 241 CKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRM 300
           CKDGLIDAVMGSTGITISNN+FSHHNEVMLLGHSD+YLPDSGMQVTIAFNHFGEKLVQRM
Sbjct: 238 CKDGLIDAVMGSTGITISNNFFSHHNEVMLLGHSDEYLPDSGMQVTIAFNHFGEKLVQRM 297

Query: 301 PRCRRGYIHVVNNDFTEWEMYAIGGSGNPTINSQGNRYTAPTNRNAKEVTKRVDTAESHW 360
           PRCRRGYIHVVNNDFT+WEMYAIGGSG+PTINSQGNRYTAP+N NAKEVTKRVDTAE  W
Sbjct: 298 PRCRRGYIHVVNNDFTQWEMYAIGGSGSPTINSQGNRYTAPSNPNAKEVTKRVDTAEGDW 357

Query: 361 RDWNWRSEGDVMVNGAFFVASGAGVEVKYERAFSVEPKSAELIEQLTWHSGVLGVGGRDN 420
           + WNWRSEGD+MVNGAFF+ASG  +EVKYE+A+SVEPKSA LI+ +T H+GVLGVGGR+N
Sbjct: 358 KGWNWRSEGDIMVNGAFFIASGEELEVKYEKAYSVEPKSAALIDLITMHAGVLGVGGRNN 417

Query: 421 NLGMWSRGPNDGEA-------GFDSFDS--GSKKSLTASSIYAIFPFLTAISCFLFLYTR 471
           NLGMWS G N G A       G D  D   GS   ++  S YA+  FLTA SC +   + 
Sbjct: 418 NLGMWSTGANGGGADQELGGSGDDYLDDYSGSSSPVSPPSAYALVSFLTAFSCLISFQSI 477

Query: 472 SMTFML 477
           ++T ML
Sbjct: 478 ALTSML 483

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449451058|ref|XP_004143279.1| PREDICTED: probable pectate lyase 12-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297816618|ref|XP_002876192.1| hypothetical protein ARALYDRAFT_485694 [Arabidopsis lyrata subsp. lyrata] gi|297322030|gb|EFH52451.1| hypothetical protein ARALYDRAFT_485694 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|21537059|gb|AAM61400.1| pectate lyase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18409790|ref|NP_566979.1| putative pectate lyase 12 [Arabidopsis thaliana] gi|32129931|sp|Q9SCP2.2|PEL12_ARATH RecName: Full=Probable pectate lyase 12; Flags: Precursor gi|62320498|dbj|BAD95042.1| pectate lyase -like protein [Arabidopsis thaliana] gi|332645525|gb|AEE79046.1| putative pectate lyase 12 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356503736|ref|XP_003520660.1| PREDICTED: probable pectate lyase 12-like [Glycine max] Back     alignment and taxonomy information
>gi|225441163|ref|XP_002265853.1| PREDICTED: probable pectate lyase 12 [Vitis vinifera] Back     alignment and taxonomy information
>gi|315272014|gb|ADU02588.1| pectate lyase-like protein 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|6630739|emb|CAB64222.1| pectate lyase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356546020|ref|XP_003541430.1| PREDICTED: probable pectate lyase 12-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query477
TAIR|locus:2101998483 AT3G53190 [Arabidopsis thalian 0.995 0.983 0.708 5.4e-189
TAIR|locus:2179949518 AT5G04310 [Arabidopsis thalian 0.895 0.824 0.625 2.3e-149
TAIR|locus:2082667501 PMR6 "powdery mildew resistant 0.882 0.840 0.607 8.6e-143
TAIR|locus:2161992432 AT5G63180 [Arabidopsis thalian 0.794 0.877 0.605 7.5e-135
TAIR|locus:2197808431 AT1G04680 [Arabidopsis thalian 0.786 0.870 0.626 1.8e-133
TAIR|locus:2121914408 AT4G24780 [Arabidopsis thalian 0.800 0.936 0.599 1.3e-132
TAIR|locus:2008550408 AT1G67750 [Arabidopsis thalian 0.832 0.973 0.589 1.5e-131
TAIR|locus:2005487470 AT4G13710 [Arabidopsis thalian 0.788 0.8 0.614 3.9e-131
TAIR|locus:2154384417 AT5G48900 [Arabidopsis thalian 0.788 0.901 0.611 1.7e-130
TAIR|locus:2093131440 AT3G24670 [Arabidopsis thalian 0.777 0.843 0.613 2.5e-129
TAIR|locus:2101998 AT3G53190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1832 (650.0 bits), Expect = 5.4e-189, P = 5.4e-189
 Identities = 343/484 (70%), Positives = 394/484 (81%)

Query:     1 MFQRTCIVLISLLSSFSPQGR-AMLNLTFP-IPHPNPEDVAQDVHRRVNASVSRRQMLQI 58
             M QR+CIVL   L    PQ   +MLN T   IPHP+PE VA  V  +VNAS++RRQ L  
Sbjct:     2 MLQRSCIVLFFSLFLLVPQMVFSMLNRTLLLIPHPDPELVAYQVQWKVNASITRRQALDT 61

Query:    59 SEKDQSPAATCFTGNPIDDCWKCDPDWANNRQRLADCVIGFGQYAMGGKGGEYYIVTDSS 118
             +  DQ+ +  C TGNPIDDCWKCDP+W NNRQ LADC IGFGQYA+GGKGG++Y VTDSS
Sbjct:    62 T--DQAGSTPCITGNPIDDCWKCDPNWPNNRQGLADCGIGFGQYALGGKGGQFYFVTDSS 119

Query:   119 DDDAVSPKPGTLRYAVIQPQPLWIVFPSNMLIKLSQELIFNSYKTLDGRGANVHITGGGC 178
             DDDAV+PKPGTLRY VIQ +PLWIVFPSNM+IKL QELIFNSYKTLDGRGANVHI GGGC
Sbjct:   120 DDDAVNPKPGTLRYGVIQEEPLWIVFPSNMMIKLKQELIFNSYKTLDGRGANVHIVGGGC 179

Query:   179 ITLQYISNVXXXXXXXXXCVESGNANVRSSPTHYGYRTKSDGDGISIFGSKDLWIDHCSL 238
             ITLQY+SN+         C +SGN NVRSSPTHYG+RTKSDGDGISIFGSKD+WIDHCSL
Sbjct:   180 ITLQYVSNIIIHNIHIHHCYQSGNTNVRSSPTHYGFRTKSDGDGISIFGSKDIWIDHCSL 239

Query:   239 SHCKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQ 298
             S CKDGLIDAVMGSTGITISNN+FSHHNEVMLLGHSD Y PDSGMQVTIAFNHFGEKL+Q
Sbjct:   240 SRCKDGLIDAVMGSTGITISNNFFSHHNEVMLLGHSDHYEPDSGMQVTIAFNHFGEKLIQ 299

Query:   299 RMPRCRRGYIHVVNNDFTEWEMYAIGGSGNPTINSQGNRYTAPTNRNAKEVTKRVDTAES 358
             RMPRCRRGYIHVVNNDFT+WEMYAIGGSGNPTINSQGNRYTAPTN  AKEVTKRV+T + 
Sbjct:   300 RMPRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPTNPFAKEVTKRVETPDG 359

Query:   359 HWRDWNWRSEGDVMVNGAFFVASGAGVEVKYERAFSVEPKSAELIEQLTWHSGVLGVGGR 418
              W+ WNWRSEGD++VNGAFFVASG G E++YE+A+SVEPKSA  I Q+T+HSGVLGVGGR
Sbjct:   360 DWKGWNWRSEGDILVNGAFFVASGEGAEMRYEKAYSVEPKSASFITQITFHSGVLGVGGR 419

Query:   419 DNNLGMWSRGPNDGEAGFDSFDSGSKKSLTASSI----YAIFPFLTAISCFLFLYTRS-M 473
             +NNLGMW+   ++G +G DS++  + +   A S     +++  FL +   +L ++T S  
Sbjct:   420 NNNLGMWTTTGSEGTSGLDSYNDYTDEMSGAGSTNRLSFSVLVFLLSSISYLVVFTSSTQ 479

Query:   474 TFML 477
              FML
Sbjct:   480 MFML 483
GO:0005886 "plasma membrane" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0016829 "lyase activity" evidence=ISS
GO:0030570 "pectate lyase activity" evidence=ISS
GO:0031225 "anchored to membrane" evidence=TAS
TAIR|locus:2179949 AT5G04310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082667 PMR6 "powdery mildew resistant 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161992 AT5G63180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197808 AT1G04680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121914 AT4G24780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008550 AT1G67750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005487 AT4G13710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154384 AT5G48900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093131 AT3G24670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P15722PLY59_SOLLC4, ., 2, ., 2, ., 20.53530.80920.8596N/Ano
Q9SCP2PLY12_ARATH4, ., 2, ., 2, ., 20.72720.99580.9834yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.20.963
4th Layer4.2.2.20.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query477
smart00656190 smart00656, Amb_all, Amb_all domain 3e-80
pfam00544200 pfam00544, Pec_lyase_C, Pectate lyase 2e-69
COG3866345 COG3866, PelB, Pectate lyase [Carbohydrate transpo 6e-26
pfam13229157 pfam13229, Beta_helix, Right handed beta helix reg 0.003
>gnl|CDD|214765 smart00656, Amb_all, Amb_all domain Back     alignment and domain information 
 Score =  247 bits (632), Expect = 3e-80
 Identities = 101/206 (49%), Positives = 122/206 (59%), Gaps = 28/206 (13%)

Query: 147 NMLIKLSQ--ELIFNSYKTLDGRGANVHITGGGCITLQYISNVIIHNIHIHHCVESGNAN 204
           ++ I L     +I NS KT+DGRG+ V I GGG +T++ +SNVII N+ IH         
Sbjct: 1   DVTITLDNAGTIIINSNKTIDGRGSKVEIKGGG-LTIKSVSNVIIRNLTIHDPKPVY--- 56

Query: 205 VRSSPTHYGYRTKSDGDGISIFGSKDLWIDHCSLSHCK---------DGLIDAVMGSTGI 255
                        SDGD ISI GS ++WIDH SLS C          DGLID   GST +
Sbjct: 57  ------------GSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYV 104

Query: 256 TISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDF 315
           TISNNYF +H +VMLLGHSD    D  M+VTIA N+FG  L QR PR R GY+HV NN +
Sbjct: 105 TISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFG-NLRQRAPRVRFGYVHVYNNYY 163

Query: 316 TEWEMYAIGGSGNPTINSQGNRYTAP 341
           T W  YAIGG    TI S+GN + AP
Sbjct: 164 TGWTSYAIGGRMGATILSEGNYFEAP 189

Length = 190
>gnl|CDD|215986 pfam00544, Pec_lyase_C, Pectate lyase Back     alignment and domain information
>gnl|CDD|226384 COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|221993 pfam13229, Beta_helix, Right handed beta helix region Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 477
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 100.0
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 100.0
smart00656190 Amb_all Amb_all domain. 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.99
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.41
PLN02218431 polygalacturonase ADPG 98.28
PLN03003456 Probable polygalacturonase At3g15720 98.23
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.19
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.18
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.17
PLN02188404 polygalacturonase/glycoside hydrolase family prote 98.14
PLN02793443 Probable polygalacturonase 98.13
PLN02155394 polygalacturonase 97.99
PLN02218431 polygalacturonase ADPG 97.99
PLN03010409 polygalacturonase 97.92
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 97.89
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 97.83
PLN02480343 Probable pectinesterase 97.73
PLN03010409 polygalacturonase 97.71
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.71
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.65
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.6
PLN03003456 Probable polygalacturonase At3g15720 97.55
PLN02155394 polygalacturonase 97.37
PLN02793443 Probable polygalacturonase 97.34
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.23
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.16
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 96.94
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 96.88
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 96.87
PLN02304379 probable pectinesterase 96.8
PLN02188404 polygalacturonase/glycoside hydrolase family prote 96.64
PLN02197588 pectinesterase 96.62
PLN02682369 pectinesterase family protein 96.57
PLN02217670 probable pectinesterase/pectinesterase inhibitor 96.47
smart00656190 Amb_all Amb_all domain. 96.31
PLN02634359 probable pectinesterase 96.27
PLN02665366 pectinesterase family protein 96.23
PF0443156 Pec_lyase_N: Pectate lyase, N terminus; InterPro: 96.19
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 96.13
PLN02497331 probable pectinesterase 96.01
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 95.97
PLN02671359 pectinesterase 95.89
PLN02176340 putative pectinesterase 95.89
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 95.83
PLN02432293 putative pectinesterase 95.79
PLN02773317 pectinesterase 94.93
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 94.89
PLN02201520 probable pectinesterase/pectinesterase inhibitor 94.66
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 94.55
PLN02416541 probable pectinesterase/pectinesterase inhibitor 94.48
PLN02916502 pectinesterase family protein 94.47
PLN02170529 probable pectinesterase/pectinesterase inhibitor 94.47
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 94.44
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 94.44
PLN02506537 putative pectinesterase/pectinesterase inhibitor 94.3
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 93.98
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 93.84
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 93.83
PLN02301548 pectinesterase/pectinesterase inhibitor 93.78
PLN02314586 pectinesterase 93.75
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 93.74
PLN02484587 probable pectinesterase/pectinesterase inhibitor 93.71
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 93.65
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 93.5
PLN02488509 probable pectinesterase/pectinesterase inhibitor 93.32
PLN02313587 Pectinesterase/pectinesterase inhibitor 92.43
PRK10531422 acyl-CoA thioesterase; Provisional 92.39
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 92.36
PLN02468565 putative pectinesterase/pectinesterase inhibitor 91.6
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 91.48
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 90.91
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 90.18
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 87.63
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 82.87
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1e-54  Score=430.65  Aligned_cols=273  Identities=29%  Similarity=0.369  Sum_probs=222.5

Q ss_pred             CCCcCCCCCeEEEEcCCCCCCCCCCCchhHHHHHhCCCCeEEEEccceEEeec------ceEEecCCcEEeccCceEEEe
Q 011814          101 QYAMGGKGGEYYIVTDSSDDDAVSPKPGTLRYAVIQPQPLWIVFPSNMLIKLS------QELIFNSYKTLDGRGANVHIT  174 (477)
Q Consensus       101 ~~ttGG~gG~vy~VT~~~D~~~~~p~pGsLR~Av~q~~P~~IvF~~~g~I~l~------~~L~V~SnkTI~G~Ga~i~I~  174 (477)
                      .+||||.+|++++|.+.+|          |...+...+|.++|.-+.|+|.+.      .+|++.|||||.|.|++.+|.
T Consensus        46 ~GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~  115 (345)
T COG3866          46 TGTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLV  115 (345)
T ss_pred             CCcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEE
Confidence            3799999999999999876          577888888885555556688875      567889999999999999999


Q ss_pred             cceeEEEeeeccEEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEe-eCCccEEEEeeeeec--------CCCCe
Q 011814          175 GGGCITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISI-FGSKDLWIDHCSLSH--------CKDGL  245 (477)
Q Consensus       175 G~g~i~i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I-~gs~nVWIDHcs~s~--------~~DGl  245 (477)
                      |++ |+|+.+.|||||||+|++.. ++++               ..|+|+| .+++|||||||+|+.        +.||+
T Consensus       116 g~g-l~i~~a~NVIirNltf~~~~-~~d~---------------~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl  178 (345)
T COG3866         116 GGG-LKIRDAGNVIIRNLTFEGFY-QGDP---------------NYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGL  178 (345)
T ss_pred             ece-EEEEeCCcEEEEeeEEEeec-cCCC---------------CCCcEEeccCCeEEEEEeeEeccccccccccCCCcc
Confidence            998 99999999999999999864 3321               2599999 679999999999998        78999


Q ss_pred             EEeeeCCCeEEEEcceecccceEEEecCCCCCCCCCC-cEEEEEeeEECCCCcCcCcccccceEEEEcceEeCCc--ceE
Q 011814          246 IDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSG-MQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTEWE--MYA  322 (477)
Q Consensus       246 iDv~~gSt~VTISnn~f~~h~k~mLiG~sd~~~~D~g-~~VTihhN~F~~n~~qR~PrvR~G~vHvvNN~y~nw~--~Ya  322 (477)
                      +|+++++++||||||+|++|+|.+|+|.+|+...|.+ .+||+|||+| +|+.||+||+|||.+||+||||+...  .||
T Consensus       179 ~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~PriRfG~vHvyNNYy~~~~~~g~a  257 (345)
T COG3866         179 VDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRIRFGMVHVYNNYYEGNPKFGVA  257 (345)
T ss_pred             EEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCceEeeEEEEeccccccCcccceE
Confidence            9999999999999999999999999999998655544 8999999999 79999999999999999999999655  466


Q ss_pred             eecCCCceEEeeCcEEeCCCCCCccceeccccCCccCcCCCeecccCCeEEeceEEeecCCc------cccccCCCcccc
Q 011814          323 IGGSGNPTINSQGNRYTAPTNRNAKEVTKRVDTAESHWRDWNWRSEGDVMVNGAFFVASGAG------VEVKYERAFSVE  396 (477)
Q Consensus       323 ig~s~~~~I~segN~F~~~~~~~~k~vt~r~~~~~~~w~~w~w~s~Gd~~~nGa~f~~sg~~------~~~~y~~~~s~~  396 (477)
                      ++.+..++|++|+|||+....+..---+++.  + +     +|+.     -+|++|..++..      .+..+...|+|+
T Consensus       258 ~~iG~~AkiyvE~NyF~~~~~~~~f~dt~~~--~-G-----Y~~~-----d~gsy~~~s~~~~~~~~G~~w~ps~~Y~Yt  324 (345)
T COG3866         258 ITIGTSAKIYVENNYFENGSEGLGFLDTKGT--S-G-----YANQ-----DSGSYLNSSKSMSVRAGGVTWNPSSYYSYT  324 (345)
T ss_pred             EeeccceEEEEecceeccCCCCceeeecCCc--c-c-----eEEe-----ccCceecccCCcccccCCccCCCCCCcccc
Confidence            6666669999999999997655322112221  0 1     2221     345666555432      234566789999


Q ss_pred             cCChhhH-HHHHhccCCCC
Q 011814          397 PKSAELI-EQLTWHSGVLG  414 (477)
Q Consensus       397 ~~~~~~v-~~lt~~AG~l~  414 (477)
                      +.|++.| +.||++||+.+
T Consensus       325 vd~~~dVks~Vt~yAGaGk  343 (345)
T COG3866         325 VDPPEDVKSFVTNYAGAGK  343 (345)
T ss_pred             cCChHHhhhhhhcccccee
Confidence            9999999 77999999754

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query477
1pxz_A346 1.7 Angstrom Crystal Structure Of Jun A 1, The Majo 2e-87
3zsc_A340 Catalytic Function And Substrate Recognition Of The 2e-12
1vbl_A416 Structure Of The Thermostable Pectate Lyase Pl 47 L 2e-12
1ooc_A361 Mutations In The T1.5 Loop Of Pectate Lyase A Lengt 5e-12
1jrg_A361 Crystal Structure Of The R3 Form Of Pectate Lyase A 6e-12
1bn8_A420 Bacillus Subtilis Pectate Lyase Length = 420 2e-11
3krg_A399 Structural Insights Into Substrate Specificity And 3e-11
2bsp_A420 Bacillus Subtilis Pectate Lyase R279k Mutant Length 4e-11
2nzm_A399 Hexasaccharide I Bound To Bacillus Subtilis Pectate 1e-10
2qx3_A330 Structure Of Pectate Lyase Ii From Xanthomonas Camp 2e-08
1pcl_A355 Unusual Structural Features In The Parallel Beta-He 4e-08
2qxz_A330 Pectate Lyase R236f From Xanthomonas Campestris Len 2e-07
2qy1_A330 Pectate Lyase A31g/r236f From Xanthomonas Campestri 2e-07
3vmv_A326 Crystal Structure Of Pectate Lyase Bsp165pela From 3e-07
1plu_A353 Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu 1e-04
2ewe_A353 Crystal Structure Of Pectate Lyase C R218k Mutant I 2e-04
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen Length = 346 Back     alignment and structure 
Iteration: 1

 Score =  319 bits (818), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 172/352 (48%), Positives = 221/352 (62%), Gaps = 19/352 (5%)
Query: 73  NPIDDCWKCDPDWANNRQRLADCVIGFGQYAMGGKGGEYYIVTDSSDDDAVSPKPGTLRY 132
           NPID CW+ D +W  NR +LADC +GFG   MGGKGG++Y VT S+DD+ V+P PGTLRY
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVT-STDDNPVNPTPGTLRY 60
Query: 133 AVIQPQPLWIVFPSNMLIKLSQELIFNSYKTLDGRGANVHITGGG-CITLQYISNVXXXX 191
              + + LWI+F  NM IKL   L    +KT+DGRGA+VH+  GG C+ ++ +S+V    
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120
Query: 192 XXXXXCVES--GNANVRSS----PTHYGYRTKSDGDGISIFGSKDLWIDHCSLSHCKDGL 245
                C  S  G+  V  S    P H       DGD I++    + WIDH SLS C DGL
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVH-----AQDGDAITMRNVTNAWIDHNSLSDCSDGL 175
Query: 246 IDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRR 305
           ID  +GSTGITISNN+F +H++VMLLGH D Y  D  M+VT+AFN FG    QRMPR R 
Sbjct: 176 IDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARY 235
Query: 306 GYIHVVNNDFTEWEMYAIGGSGNPTINSQGNRYTAPTNRNAKEVTKRVD-TAESHWRDWN 364
           G +HV NN++  W +YAIGGS NPTI S+GN +TAP+    KEVTKR+   + S   +W 
Sbjct: 236 GLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWV 295
Query: 365 WRSEGDVMVNGAFFVASGAGVEVKY---ERAFSVEPKSAELIEQLTWHSGVL 413
           WRS  D  +NGA+FV+SG   E        AF VE  +A    QLT ++GV+
Sbjct: 296 WRSTRDAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAA--PQLTKNAGVV 345
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima Length = 340 Back     alignment and structure
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 Length = 416 Back     alignment and structure
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A Length = 361 Back     alignment and structure
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi Length = 361 Back     alignment and structure
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase Length = 420 Back     alignment and structure
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase Length = 399 Back     alignment and structure
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant Length = 420 Back     alignment and structure
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase Length = 399 Back     alignment and structure
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 Length = 330 Back     alignment and structure
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases Length = 355 Back     alignment and structure
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 Length = 326 Back     alignment and structure
>pdb|1PLU|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu+3 Ion In The Putative Calcium Binding Site Length = 353 Back     alignment and structure
>pdb|2EWE|A Chain A, Crystal Structure Of Pectate Lyase C R218k Mutant In Complex With Pentagalacturonic Acid Length = 353 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query477
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 1e-135
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 4e-91
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 3e-86
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 1e-78
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 1e-76
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 4e-70
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 5e-68
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 1e-66
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 9e-66
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 3e-65
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 8e-57
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 4e-04
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Length = 346 Back     alignment and structure
 Score =  392 bits (1008), Expect = e-135
 Identities = 169/345 (48%), Positives = 225/345 (65%), Gaps = 5/345 (1%)

Query: 73  NPIDDCWKCDPDWANNRQRLADCVIGFGQYAMGGKGGEYYIVTDSSDDDAVSPKPGTLRY 132
           NPID CW+ D +W  NR +LADC +GFG   MGGKGG++Y VT + DD+ V+P PGTLRY
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTST-DDNPVNPTPGTLRY 60

Query: 133 AVIQPQPLWIVFPSNMLIKLSQELIFNSYKTLDGRGANVHITGGG-CITLQYISNVIIHN 191
              + + LWI+F  NM IKL   L    +KT+DGRGA+VH+  GG C+ ++ +S+VI+H+
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 192 IHIHHCVESGNANVRSSPT-HYGYRTKSDGDGISIFGSKDLWIDHCSLSHCKDGLIDAVM 250
           +HIH C  S   +V  S +         DGD I++    + WIDH SLS C DGLID  +
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180

Query: 251 GSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHV 310
           GSTGITISNN+F +H++VMLLGH D Y  D  M+VT+AFN FG    QRMPR R G +HV
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV 240

Query: 311 VNNDFTEWEMYAIGGSGNPTINSQGNRYTAPTNRNAKEVTKRVD-TAESHWRDWNWRSEG 369
            NN++  W +YAIGGS NPTI S+GN +TAP+    KEVTKR+   + S   +W WRS  
Sbjct: 241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTR 300

Query: 370 DVMVNGAFFVASGAGVEVK-YERAFSVEPKSAELIEQLTWHSGVL 413
           D  +NGA+FV+SG   E   Y    + + ++     QLT ++GV+
Sbjct: 301 DAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAGVV 345
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Length = 340 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Length = 361 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Length = 355 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Length = 326 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Length = 399 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Length = 330 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Length = 359 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Length = 353 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Length = 416 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Length = 359 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query477
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 100.0
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 100.0
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 100.0
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 100.0
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 100.0
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 100.0
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 100.0
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 100.0
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 100.0
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 100.0
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 98.46
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.45
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 98.4
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.36
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 98.33
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 98.27
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 98.24
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 98.19
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 98.16
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 98.15
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 98.13
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 98.11
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 98.11
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 98.11
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 98.1
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 98.08
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 98.04
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.96
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.89
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.88
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.86
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.82
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 97.78
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 97.78
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.73
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.71
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.7
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.69
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.69
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.49
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.49
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.4
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.23
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 97.21
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 97.18
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.18
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 97.17
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.15
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 97.12
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 97.1
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.02
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 96.96
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 96.89
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.75
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.72
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 96.68
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 96.65
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 96.27
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.19
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 95.26
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 95.09
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 94.54
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 92.31
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 91.95
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 90.22
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 88.77
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 86.72
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
Probab=100.00  E-value=2e-98  Score=767.10  Aligned_cols=342  Identities=49%  Similarity=0.882  Sum_probs=324.7

Q ss_pred             CCccccccccCcchhcchhccccCCcCcCCCCcCCCCCeEEEEcCCCCCCCCCCCchhHHHHHhCCCCeEEEEccceEEe
Q 011814           72 GNPIDDCWKCDPDWANNRQRLADCVIGFGQYAMGGKGGEYYIVTDSSDDDAVSPKPGTLRYAVIQPQPLWIVFPSNMLIK  151 (477)
Q Consensus        72 ~n~id~cwr~~~~w~~~r~~LA~~a~GFG~~ttGG~gG~vy~VT~~~D~~~~~p~pGsLR~Av~q~~P~~IvF~~~g~I~  151 (477)
                      +||||+||||+++|+.+||+||.||+|||++||||+||++|+||+++| ++++|+|||||+|+++++||||+|+++|+|+
T Consensus         1 ~~~~~~c~~~~~~w~~~~~~~~~~a~Gfg~~ttGG~gG~v~~VT~~~d-~~~~~~~GsLr~av~~~~P~~Ivf~~~g~I~   79 (346)
T 1pxz_A            1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCccchhhccCcchhhhhhhcccCCccccCCCcCCCCccEEEECChHH-cccccCcchhHHHhccCCCeEEEEcCCcEEe
Confidence            699999999999999999999999999999999999999999999876 5899999999999999999999999999999


Q ss_pred             ecceEEecCCcEEeccCceEEEec-ceeEEEeeeccEEEEeeEEEeeeccCCcee-ccCCCcccccccCCCCcEEeeCCc
Q 011814          152 LSQELIFNSYKTLDGRGANVHITG-GGCITLQYISNVIIHNIHIHHCVESGNANV-RSSPTHYGYRTKSDGDGISIFGSK  229 (477)
Q Consensus       152 l~~~L~V~SnkTI~G~Ga~i~I~G-~g~i~i~~a~NVIIRnL~I~~~~~~g~~~i-~~sp~~~g~r~~sdgDaI~I~gs~  229 (477)
                      |+++|+|+|||||+|+|++++|.| +.+|++++++|||||||+|+++++.+++.| +++|.|+|++...++|||+|++++
T Consensus        80 l~~~l~V~sn~TI~G~ga~~~i~G~G~gi~i~~a~NVIIrnl~i~~~~~~~~~~I~~~~~~~~g~~~~~~~DaI~i~~s~  159 (346)
T 1pxz_A           80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT  159 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCE
T ss_pred             cCccEEecCCeEEEccCCceEEeCCcceEEEEccCCEEEEeeEEEeeccCCCceEEeccCcccccccCCCCCEEEEecCc
Confidence            999999999999999999999998 336999999999999999999998887777 889999998888999999999999


Q ss_pred             cEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecccceEEEecCCCCCCCCCCcEEEEEeeEECCCCcCcCcccccceEE
Q 011814          230 DLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIH  309 (477)
Q Consensus       230 nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~h~k~mLiG~sd~~~~D~g~~VTihhN~F~~n~~qR~PrvR~G~vH  309 (477)
                      |||||||+|+|+.||++|+++++++||||||+|++|+|+||+|++|+...|+.++||||||+|++++.||+||+|+|++|
T Consensus       160 nVwIDHcs~s~~~Dg~id~~~~s~~vTISnn~f~~H~k~~l~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r~g~~h  239 (346)
T 1pxz_A          160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVH  239 (346)
T ss_dssp             EEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEE
T ss_pred             eEEEEeeEEecCCCCcEeeccCcceEEEEeeEEecCCceeEECCCCccccCCceEEEEEeeEEeCCccccCccEecceEE
Confidence            99999999999999999999999999999999999999999999998877777999999999966899999999999999


Q ss_pred             EEcceEeCCcceEeecCCCceEEeeCcEEeCCCCCCccceeccccCC-ccCcCCCeecccCCeEEeceEEeecCCcccc-
Q 011814          310 VVNNDFTEWEMYAIGGSGNPTINSQGNRYTAPTNRNAKEVTKRVDTA-ESHWRDWNWRSEGDVMVNGAFFVASGAGVEV-  387 (477)
Q Consensus       310 vvNN~y~nw~~Yaig~s~~~~I~segN~F~~~~~~~~k~vt~r~~~~-~~~w~~w~w~s~Gd~~~nGa~f~~sg~~~~~-  387 (477)
                      ++||||++|++|++++++++++++|+|||++++++..|+|++|.+++ +.+|++|+|+++||+|+||++|.+||.+... 
T Consensus       240 v~NN~~~~~~~~~i~~~~~~~i~~egN~F~~~~~~~~k~v~~~~~~~~~~~~~~~~~~~~g~~~~nG~~~~~s~~~~~~~  319 (346)
T 1pxz_A          240 VANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETN  319 (346)
T ss_dssp             EESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCCCCCC
T ss_pred             EEeeEEEcccceEEeccCCceEEEECCEEECCCCCcccccEEEeccCCccccccccEecCCCeEEeceEecCCCCCccCC
Confidence            99999999999999999999999999999999999899999999876 6789999999999999999999999976544 


Q ss_pred             ccCCCcccccCChhhHHHHHhccCCCC
Q 011814          388 KYERAFSVEPKSAELIEQLTWHSGVLG  414 (477)
Q Consensus       388 ~y~~~~s~~~~~~~~v~~lt~~AG~l~  414 (477)
                      +|+++|+|+++|+++|++|+++||||.
T Consensus       320 ~y~~~~~~~~~~~~~v~~~~~~aG~~~  346 (346)
T 1pxz_A          320 IYNSNEAFKVENGNAAPQLTKNAGVVT  346 (346)
T ss_dssp             CCCTTTCCCCCCGGGHHHHTTTCSSCC
T ss_pred             CCCcccccccCCHHHHHHHhhhccCCC
Confidence            599999999999999999999999984
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 477
d1pxza_346 b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark 1e-139
d1pe9a_361 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 3e-87
d1qcxa_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 2e-66
d1bn8a_399 b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [Ta 1e-63
d1idka_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 1e-59
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 1e-41
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 0.001
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Length = 346 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

 Score =  403 bits (1036), Expect = e-139
 Identities = 168/345 (48%), Positives = 223/345 (64%), Gaps = 5/345 (1%)

Query: 73  NPIDDCWKCDPDWANNRQRLADCVIGFGQYAMGGKGGEYYIVTDSSDDDAVSPKPGTLRY 132
           NPID CW+ D +W  NR +LADC +GFG   MGGKGG++Y VT + DD+ V+P PGTLRY
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTST-DDNPVNPTPGTLRY 60

Query: 133 AVIQPQPLWIVFPSNMLIKLSQELIFNSYKTLDGRGANVHITG-GGCITLQYISNVIIHN 191
              + + LWI+F  NM IKL   L    +KT+DGRGA+VH+   G C+ ++ +S+VI+H+
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 192 IHIHHCVESGNANVRSSP-THYGYRTKSDGDGISIFGSKDLWIDHCSLSHCKDGLIDAVM 250
           +HIH C  S   +V  S           DGD I++    + WIDH SLS C DGLID  +
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180

Query: 251 GSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHV 310
           GSTGITISNN+F +H++VMLLGH D Y  D  M+VT+AFN FG    QRMPR R G +HV
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV 240

Query: 311 VNNDFTEWEMYAIGGSGNPTINSQGNRYTAPTNRNAKEVTKRVDT-AESHWRDWNWRSEG 369
            NN++  W +YAIGGS NPTI S+GN +TAP+    KEVTKR+   + S   +W WRS  
Sbjct: 241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTR 300

Query: 370 DVMVNGAFFVASGAGVE-VKYERAFSVEPKSAELIEQLTWHSGVL 413
           D  +NGA+FV+SG   E   Y    + + ++     QLT ++GV+
Sbjct: 301 DAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAGVV 345
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Length = 361 Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Length = 399 Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query477
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 100.0
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 100.0
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 100.0
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 100.0
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 100.0
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 100.0
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.38
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.17
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 98.13
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 98.13
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 97.96
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.95
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.87
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.84
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.67
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 97.43
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.32
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.31
d1ofla_481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 97.23
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 96.96
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 96.94
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.88
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 96.51
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 96.47
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 95.84
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 95.71
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 95.61
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 95.44
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.39
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 95.14
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 94.55
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 94.25
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 93.72
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 92.26
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=100.00  E-value=5.2e-92  Score=716.91  Aligned_cols=342  Identities=49%  Similarity=0.885  Sum_probs=311.1

Q ss_pred             CCccccccccCcchhcchhccccCCcCcCCCCcCCCCCeEEEEcCCCCCCCCCCCchhHHHHHhCCCCeEEEEccceEEe
Q 011814           72 GNPIDDCWKCDPDWANNRQRLADCVIGFGQYAMGGKGGEYYIVTDSSDDDAVSPKPGTLRYAVIQPQPLWIVFPSNMLIK  151 (477)
Q Consensus        72 ~n~id~cwr~~~~w~~~r~~LA~~a~GFG~~ttGG~gG~vy~VT~~~D~~~~~p~pGsLR~Av~q~~P~~IvF~~~g~I~  151 (477)
                      .||||+||||+|+|+++||+||+||+|||++||||+||+||+||+++| ++++|+|||||+|++|++||||||+++|+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~a~Gfg~~ttGG~gG~v~~Vt~l~D-~~~~~g~GsLr~a~~~~~pr~IvF~vsg~I~   79 (346)
T d1pxza_           1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCCcccccCCCCCHHHHHHhhhhccccccCCCcCCCCceEEEecChhh-ccccCCCccHHHHhhCCCCeEEEEeccEEEe
Confidence            489999999999999999999999999999999999999999999977 5789999999999999999999999999999


Q ss_pred             ecceEEecCCcEEeccCceEEEecce-eEEEeeeccEEEEeeEEEeeeccCCceeccCCC-cccccccCCCCcEEeeCCc
Q 011814          152 LSQELIFNSYKTLDGRGANVHITGGG-CITLQYISNVIIHNIHIHHCVESGNANVRSSPT-HYGYRTKSDGDGISIFGSK  229 (477)
Q Consensus       152 l~~~L~V~SnkTI~G~Ga~i~I~G~g-~i~i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~-~~g~r~~sdgDaI~I~gs~  229 (477)
                      |+++|.|+|||||+|||++++|.+.| +|+++.++|||||||+||++.+.....+...+. +.+.+...++|+|+|.+++
T Consensus        80 l~~~L~v~sn~TI~G~ga~~~i~~~G~~i~i~~~~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~gDai~i~~s~  159 (346)
T d1pxza_          80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT  159 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCE
T ss_pred             ccceEEeCCCceEEccCCCceEeeecceEEEecCCEEEEeceEEecCcccCCcccccccccCccccccCCCceeeeecCc
Confidence            99999999999999999999998643 588999999999999999987655444432222 2233446789999999999


Q ss_pred             cEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecccceEEEecCCCCCCCCCCcEEEEEeeEECCCCcCcCcccccceEE
Q 011814          230 DLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIH  309 (477)
Q Consensus       230 nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~h~k~mLiG~sd~~~~D~g~~VTihhN~F~~n~~qR~PrvR~G~vH  309 (477)
                      |||||||+|+|+.||++|+++++++||||||+|++|+|++|+|+++....+.+++||||||+|.++..+|+|++|+|++|
T Consensus       160 nvwIDH~s~s~~~D~~idi~~~s~~vTis~~~f~~~~~~~~~G~~~~~~~~~~~~vT~hhN~~~~n~~r~~p~~r~g~~h  239 (346)
T d1pxza_         160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVH  239 (346)
T ss_dssp             EEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEE
T ss_pred             eEEEECcEeeccccCceeEecCCEEEEEEeeEEccCccccccCCCcccccCCCceEEEEccccCCCcccCCCccccceEE
Confidence            99999999999999999999999999999999999999999999987766677999999999988888999999999999


Q ss_pred             EEcceEeCCcceEeecCCCceEEeeCcEEeCCCCCCccceeccccC-CccCcCCCeecccCCeEEeceEEeecCCcc-cc
Q 011814          310 VVNNDFTEWEMYAIGGSGNPTINSQGNRYTAPTNRNAKEVTKRVDT-AESHWRDWNWRSEGDVMVNGAFFVASGAGV-EV  387 (477)
Q Consensus       310 vvNN~y~nw~~Yaig~s~~~~I~segN~F~~~~~~~~k~vt~r~~~-~~~~w~~w~w~s~Gd~~~nGa~f~~sg~~~-~~  387 (477)
                      ++||||++|..|++++++++++++|+|||++++.+..|+++++... ....|++|.|++++|+++||++|.++|... ..
T Consensus       240 v~NN~~~n~~~~~~~~~~~~~v~~e~N~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~nga~~~~sg~~~~~~  319 (346)
T d1pxza_         240 VANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETN  319 (346)
T ss_dssp             EESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCCCCCC
T ss_pred             EECcEeecCccEEEeccCceEEEEEeeEEECCCCccceeeecccccCCccccccceeeccCceeeccceeccCCCccccc
Confidence            9999999999999999999999999999999999999999988765 344689999999999999999999887654 45


Q ss_pred             ccCCCcccccCChhhHHHHHhccCCCC
Q 011814          388 KYERAFSVEPKSAELIEQLTWHSGVLG  414 (477)
Q Consensus       388 ~y~~~~s~~~~~~~~v~~lt~~AG~l~  414 (477)
                      .|.++|+|+++|++.|++|+++||||.
T Consensus       320 ~~~~~~~y~~~~as~V~~v~~~AGal~  346 (346)
T d1pxza_         320 IYNSNEAFKVENGNAAPQLTKNAGVVT  346 (346)
T ss_dssp             CCCTTTCCCCCCGGGHHHHTTTCSSCC
T ss_pred             cccCccccccCCHHHHHhhhccCCCCC
Confidence            689999999999999999999999984
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure