Citrus Sinensis ID: 011824

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470------
Protein Sequence
MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYDSPI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHccccEEEccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHcccccccccccEEEEccccccccccccccccccccEEHccEEEEEccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHcccccccc
Coil and Loop (DISEMBL)
mkvfmpnqdncdRISQllgscepaksWQMLYLYTVLYITgfgaagirpcvssfgadqfdersKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMlffigtplyrhrlpggsplTRVAQVLVAAFRKRHaafssseliglyevpgkhsaikgsgkiahtddfRCLDKAALELkedvinpspwklctvTQVEEVKTLVrlvpipacTIMLNVILTEFLTLSVQQAYTMNthmgklklpvtcmpvfpgLSIFLILSLYYSTfvplcrritghprgasqLQRVGIGLAVSILSVIWAGIFERYRRNYAIshgyefsfltampdlSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSvtgnpkkgqpnwlaqnintgRFDYLYWLLAVLSVINFCAFLYSAYRYKYRseqkhgndyevmenklydspi
Flexible Loop (DISEMBL)
mkvfmpnqdncDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELkedvinpspwklctvtQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVtgnpkkgqpnWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRseqkhgndyevmenklydspi
Low Complexity Region (SEG)
MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGlsiflilslyysTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIgsayaalagglgcfaasILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYDSPI
Disordered region (IsUnstruct)
************RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR*********************
Disordered Region (DISOPRED)
MKVFMPN******************SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER*****THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGL******************TDDFRCLDKAALE**********WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRY************************
Disordered Region (DISEMBL)
********DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYDSPI
Disordered Region (DISPRO)
***FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSE*******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYDSPI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	476	2.2.26 [Sep-21-2011]
Q9LYR6	624	Probable peptide/nitrate	yes	no	0.953	0.727	0.807	0.0
Q9M390	570	Peptide transporter PTR1	no	no	0.901	0.752	0.422	1e-101
Q9LFB8	570	Peptide transporter PTR5	no	no	0.907	0.757	0.418	1e-95
P46032	585	Peptide transporter PTR2	no	no	0.903	0.735	0.420	2e-94
Q93Z20	590	Probable peptide/nitrate	no	no	0.855	0.689	0.430	7e-91
Q84WG0	545	Probable peptide/nitrate	no	no	0.836	0.730	0.377	7e-78
Q9SX20	596	Probable nitrite transpor	no	no	0.915	0.731	0.381	1e-77
Q9M1I2	555	Probable peptide/nitrate	no	no	0.897	0.769	0.360	3e-77
Q8H157	585	Nitrate transporter 1.2 O	no	no	0.909	0.740	0.355	2e-76
Q9FNL7	582	Peptide transporter PTR3-	no	no	0.928	0.759	0.367	6e-76

>sp|Q9LYR6|PTR49_ARATH Probable peptide/nitrate transporter At5g13400 OS=Arabidopsis thaliana GN=At5g13400 PE=2 SV=1

 Score =  773 bits (1997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/456 (80%), Positives = 414/456 (90%), Gaps = 2/456 (0%)

Query: 1   MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 60
           +K+F+P+Q NC ++S LLG+CE AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE
Sbjct: 159 LKMFVPDQSNCGQLSLLLGNCEEAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218

Query: 61  RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 120
           +SKDYKTHLDRFFNFFYLSVT+GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF 
Sbjct: 219 KSKDYKTHLDRFFNFFYLSVTLGAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFA 278

Query: 121 GTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHT 180
           GTPLYRHRLPGGSPLTRVAQVLVAAFRKR+AAF+SSE IGLYEVPG  SAI GS KI H+
Sbjct: 279 GTPLYRHRLPGGSPLTRVAQVLVAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHS 338

Query: 181 DDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTL 240
           +DF  LDKAALELKED + PSPWKLCTVTQVEEVK L+RL+PIP CTIML+++LTE+LTL
Sbjct: 339 NDFIWLDKAALELKEDGLEPSPWKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTL 398

Query: 241 SVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQR 300
           SVQQAYT+NTH+  LKLPVTCMPVFPGLSIFLILSLYYS FVP+ RRITG+P GASQLQR
Sbjct: 399 SVQQAYTLNTHIQHLKLPVTCMPVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQR 458

Query: 301 VGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVF 360
           VGIGLAVSI+SV WAG+FE YRR+YAI +G+EF+FLT MPDL+AYWLLIQYCLIGIAEVF
Sbjct: 459 VGIGLAVSIISVAWAGLFENYRRHYAIQNGFEFNFLTQMPDLTAYWLLIQYCLIGIAEVF 518

Query: 361 CIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 420
           CIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAA+ILN+I+K+ T +      +WL+Q
Sbjct: 519 CIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAATILNNIVKAATRDSDG--KSWLSQ 576

Query: 421 NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRS 456
           NINTGRFD LYWLL +LS +NFC FL+SA+RYKYR+
Sbjct: 577 NINTGRFDCLYWLLTLLSFLNFCVFLWSAHRYKYRA 612

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  369 bits (946), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/440 (42%), Positives = 274/440 (62%), Gaps = 11/440 (2%)

Query: 20  SCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS 79
           +C P  S Q    +  LY+   G  GI+PCVSSFGADQFDE  ++ K     FFN+FY S
Sbjct: 131 TCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFS 189

Query: 80  VTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVA 139
           + VGA++A T++V+IQM  GWG  FG   +AM I+   FF G+  YR + PGGSPLTR+ 
Sbjct: 190 INVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIF 249

Query: 140 QVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVIN 199
           QV+VAAFRK        + + L+E     S IKGS K+ HTD+ +  DKAA+E + D I 
Sbjct: 250 QVIVAAFRKISVKVPEDKSL-LFETADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIK 308

Query: 200 P---SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGK-L 255
               +PW+LC+VTQVEE+K+++ L+P+ A  I+   + ++  T+ V Q  TM+ HMGK  
Sbjct: 309 DGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNF 368

Query: 256 KLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWA 315
           ++P   + +F  +S+     +Y    +PL R+ T + RG +QLQR+GIGL VSI ++I A
Sbjct: 369 EIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITA 428

Query: 316 GIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD 375
           G+ E  R +Y  +H    ++      +S +W + QY LIG AEVF  +G LEF Y++APD
Sbjct: 429 GVLEVVRLDYVKTHN---AYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPD 485

Query: 376 AMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLA 435
           AM+S+ SA +     LG + +++L +++  +T   K G+P W+  N+N G  DY ++LLA
Sbjct: 486 AMRSLCSALSLTTVALGNYLSTVLVTVVMKIT--KKNGKPGWIPDNLNRGHLDYFFYLLA 543

Query: 436 VLSVINFCAFLYSAYRYKYR 455
            LS +NF  +L+ + RYKY+
Sbjct: 544 TLSFLNFLVYLWISKRYKYK 563

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  350 bits (898), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 185/442 (41%), Positives = 262/442 (59%), Gaps = 10/442 (2%)

Query: 24  AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 83
           A + Q    +  LY+   G  GI+PCVSSFGADQFD+  +  K     FFN+FY  + VG
Sbjct: 134 ATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVG 193

Query: 84  AIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLV 143
           A++A +++V+IQM  GWG   G   +AM I+ + FF G+  YR + PGGSPLTR+ QV+V
Sbjct: 194 AMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIV 253

Query: 144 AAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKED---VINP 200
           A+ RK        E + LYE     S+I GS K+ HT      DKAA+E + D       
Sbjct: 254 ASCRKSKVKIPEDESL-LYENQDAESSIIGSRKLEHTKILTFFDKAAVETESDNKGAAKS 312

Query: 201 SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMG-KLKLPV 259
           S WKLCTVTQVEE+K L+RL+PI A  I+   + ++  T+ V Q  T++ HMG   K+P 
Sbjct: 313 SSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPS 372

Query: 260 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFE 319
             + +F  LS+     +Y    VP  R+ TGH RG +QLQR+GIGL +SI S++ AGI E
Sbjct: 373 ASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSAGILE 432

Query: 320 RYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKS 379
             R NY  +H     +      ++ +W + QY L+G AEVF  +G LEF Y++APDAM+S
Sbjct: 433 VARLNYVQTHNL---YNEETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRS 489

Query: 380 IGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSV 439
           + SA +  A   G + ++ L +++  VT +   G+P W+A+N+N G  DY +WLLA LS 
Sbjct: 490 LCSALSLTAIAFGNYLSTFLVTLVTKVTRS--GGRPGWIAKNLNNGHLDYFFWLLAGLSF 547

Query: 440 INFCAFLYSAYRYKYRSEQKHG 461
           +NF  +L+ A  Y Y+    H 
Sbjct: 548 LNFLVYLWIAKWYTYKKTTGHA 569

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  347 bits (889), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 184/438 (42%), Positives = 266/438 (60%), Gaps = 8/438 (1%)

Query: 21  CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 80
           C  A   Q    +  LY+   G  GI+PCVSSFGADQFD+     +     FFN+FY S+
Sbjct: 149 CPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSI 208

Query: 81  TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQ 140
            +GA+V+ +L+V+IQ   GWG  FG   + MG++   FF GTPLYR + PGGSP+TR++Q
Sbjct: 209 NIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQ 268

Query: 141 VLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVIN- 199
           V+VA+FRK          + LYE   K+SAI GS KI HTDD + LDKAA+  +E+  + 
Sbjct: 269 VVVASFRKSSVKVPEDATL-LYETQDKNSAIAGSRKIEHTDDCQYLDKAAVISEEESKSG 327

Query: 200 --PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKL 257
              + W+LCTVTQVEE+K L+R+ PI A  I+ + +  +  T+ VQQ   MN  +G  +L
Sbjct: 328 DYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKIGSFQL 387

Query: 258 PVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGI 317
           P   +  F   S+ + + LY    VPL R+ TG  +G +++QR+GIGL VS+L +  A I
Sbjct: 388 PPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMAAAAI 447

Query: 318 FERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM 377
            E  R + A   G   S   A   +S  W + QY ++G AEVF  +G LEF Y+++PDAM
Sbjct: 448 VEIIRLHMANDLGLVES--GAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQSPDAM 505

Query: 378 KSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVL 437
           +S+ SA A L   LG + +S++ +++   T   + GQ  W++ N+N+G  DY +WLLA L
Sbjct: 506 RSLCSALALLTNALGNYLSSLILTLVTYFT--TRNGQEGWISDNLNSGHLDYFFWLLAGL 563

Query: 438 SVINFCAFLYSAYRYKYR 455
           S++N   + +SA RYK +
Sbjct: 564 SLVNMAVYFFSAARYKQK 581

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score =  334 bits (857), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 183/425 (43%), Positives = 256/425 (60%), Gaps = 18/425 (4%)

Query: 21  CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 80
           C PA + Q    +T LY+   G  GI+PCVSSFGADQFD+     +     FFN+FY S+
Sbjct: 163 CSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFNWFYFSI 222

Query: 81  TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQ 140
            +G+ ++ TL+V++Q   GWG  F    + MG+S   FFIGTPLYR + PGGSP+TRV Q
Sbjct: 223 NIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITRVCQ 282

Query: 141 VLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAAL----ELKED 196
           VLVAA+RK        ++  LYE   K+S I GS KI HTD ++ LDKAA+    E K  
Sbjct: 283 VLVAAYRKLKLNL-PEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEYESKSG 341

Query: 197 VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLK 256
             + +PWKLCTVTQVEEVKTL+R+ PI A  I+ +V+ ++  TL VQQ  +MN  +   +
Sbjct: 342 AFS-NPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNRIIRSFE 400

Query: 257 LPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAG 316
           +P     VF  L + + + +Y    VP  RR TG P+G + LQR+GIGL +S+LS+  A 
Sbjct: 401 IPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLSIAAAA 460

Query: 317 IFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA 376
           I E  R   A           AM   S +W + QY L+GIAEVF  +G +EF Y+E+PDA
Sbjct: 461 IVETVRLQLAQD-------FVAM---SIFWQIPQYILMGIAEVFFFIGRVEFFYDESPDA 510

Query: 377 MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAV 436
           M+S+ SA A L   +G + +S++ +++   T     G+  W+  ++N G  DY +WLL  
Sbjct: 511 MRSVCSALALLNTAVGSYLSSLILTLVAYFTA--LGGKDGWVPDDLNKGHLDYFFWLLVS 568

Query: 437 LSVIN 441
           L ++N
Sbjct: 569 LGLVN 573

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2

 Score =  291 bits (745), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 167/442 (37%), Positives = 249/442 (56%), Gaps = 44/442 (9%)

Query: 15  SQLLGS-CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 73
           ++ +GS C PA   Q   L++ LY+   G  GI+PCVSSFGADQFD+     +     FF
Sbjct: 143 AECIGSLCPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKASFF 202

Query: 74  NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 133
           N+FY ++ +GA V+ T++V+IQ  +GW   F    + MG++ M FF GTPLYR + P GS
Sbjct: 203 NWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPRGS 262

Query: 134 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 193
           P+T V QVLVAA+RK +            +VP   +                        
Sbjct: 263 PITSVCQVLVAAYRKSN-----------LKVPEDST------------------------ 287

Query: 194 KEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMG 253
            E   N +PWKLCTVTQVEEVK L+RLVPI A  I+ +V+ ++  TL VQQ   M   +G
Sbjct: 288 DEGDANTNPWKLCTVTQVEEVKILLRLVPIWASGIIFSVLHSQIYTLFVQQGRCMKRTIG 347

Query: 254 KLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVI 313
             ++P   + +F   S+ + + +Y    VPL RR TG  +G ++LQR+GIGL VS+LS+ 
Sbjct: 348 LFEIPPATLGMFDTASVLISVPIYDRVIVPLVRRFTGLAKGFTELQRMGIGLFVSVLSLT 407

Query: 314 WAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEA 373
           +A I E  R   A     +      +  L+ +W + QY L+G A VF  VG +EF YE++
Sbjct: 408 FAAIVETVRLQLA--RDLDLVESGDIVPLNIFWQIPQYFLMGTAGVFFFVGRIEFFYEQS 465

Query: 374 PDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWL-AQNINTGRFDYLYW 432
           PD+M+S+ SA+A L   LG + +S++ +++  ++     G+  W+ + NIN G  DY +W
Sbjct: 466 PDSMRSLCSAWALLTTTLGNYLSSLIITLVAYLS-----GKDCWIPSDNINNGHLDYFFW 520

Query: 433 LLAVLSVINFCAFLYSAYRYKY 454
           LL  L  +N   F++ + +Y +
Sbjct: 521 LLVSLGSVNIPVFVFFSVKYTH 542

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1

 Score =  291 bits (744), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 170/446 (38%), Positives = 252/446 (56%), Gaps = 10/446 (2%)

Query: 21  CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 80
           C  A + Q+  LY  L +   G+ GIRPCV +FGADQFDE   +  T    +FN++Y  +
Sbjct: 132 CVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCM 191

Query: 81  TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQ 140
               ++A T++V+IQ   GWG   G   +AM +S + F  G  LYRH +P GSP TR+ Q
Sbjct: 192 GAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQ 251

Query: 141 VLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVIN- 199
           V VAAFRKR     S   + LY      + I   GK+ HT     LDKAA+  +ED +  
Sbjct: 252 VGVAAFRKRKLRMVSDPSL-LYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTEEDNLKP 310

Query: 200 ---PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM-GKL 255
              P+ W+L TV +VEE+K+++R+ PI A  I+L     +  T S+QQA TMN H+    
Sbjct: 311 GQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSF 370

Query: 256 KLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWA 315
           ++P   M VF  +++   +  Y   FV + R+ TG  RG + L R+GIG  +SI++ + A
Sbjct: 371 QIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISIIATLVA 430

Query: 316 GIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD 375
           G  E  R++ AI HG      T +P +S  WL+ QY L G+AE F  +G LEF Y++AP+
Sbjct: 431 GFVEVKRKSVAIEHGLLDKPHTIVP-ISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPE 489

Query: 376 AMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLA-QNINTGRFDYLYWLL 434
           +M+S  +A   +A  +G + +++L +++   +  P     NWL   N+N GR +Y YWL+
Sbjct: 490 SMRSTATALFWMAISIGNYVSTLLVTLVHKFSAKPDGS--NWLPDNNLNRGRLEYFYWLI 547

Query: 435 AVLSVINFCAFLYSAYRYKYRSEQKH 460
            VL  +N   +L+ A  Y Y+  Q H
Sbjct: 548 TVLQAVNLVYYLWCAKIYTYKPVQVH 573

May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1I2|PTR46_ARATH Probable peptide/nitrate transporter At3g54450 OS=Arabidopsis thaliana GN=At3g54450 PE=2 SV=1

 Score =  289 bits (740), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 159/441 (36%), Positives = 247/441 (56%), Gaps = 14/441 (3%)

Query: 33  YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 92
           +  LY+   G  G +PCV +F ADQF E + + K     FFN++Y+++ + + +A   ++
Sbjct: 118 FMALYVMAVGEGGHKPCVMTFAADQFGEANAEEKAAKTSFFNYWYMAIVLASSIAVLALI 177

Query: 93  YIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAA 152
           +IQ    W   F  +A ++ I+ ++F IG P YR ++P GSP TRVAQV+VAA +K   +
Sbjct: 178 FIQERVSWSLGFSIIAGSVVIAIVIFLIGIPKYRKQVPVGSPFTRVAQVMVAALKKWRLS 237

Query: 153 FSSSELIGL-YEVPGKHSAIKGSGK----IAHTDDFRCLDKAAL--ELKEDVINPSPWKL 205
            S+    GL YE   +H     +      +A T+ FR LDKA +  E+  +  N +PW+L
Sbjct: 238 -STRHHYGLCYEEEDEHKLESTNSNQVYLLARTNQFRFLDKATIIDEIDHNK-NRNPWRL 295

Query: 206 CTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGK-LKLPVTCMPV 264
           CTV QVEEVK ++RL+PI    IM    LT+  T  ++Q   M+  +G    +P      
Sbjct: 296 CTVNQVEEVKLILRLIPIWISLIMFCATLTQLNTFFLKQGSMMDRTIGNHFTIPPAAFQS 355

Query: 265 FPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRN 324
             G++I +++ LY   FVP+ R+IT H  G + LQR+G+GL V+  +++  G+ E  R  
Sbjct: 356 IVGVTILILIPLYDRVFVPMVRKITNHHSGITSLQRIGVGLFVATFNMVICGLVEAKRLK 415

Query: 325 YAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY 384
            A  HG   S    +P +S+ WLL QY L+GI +VF IVG+ E  Y++ P+ M+SIG+A 
Sbjct: 416 VARDHGLIDSPKEVVP-MSSLWLLPQYILVGIGDVFTIVGMQELFYDQMPETMRSIGAAI 474

Query: 385 AALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCA 444
                G+G F ++    II +V    K     WL  N+N    DY YW++A L+ ++ C 
Sbjct: 475 FISVVGVGSFVST---GIISTVQTISKSHGEEWLVNNLNRAHLDYYYWIIASLNAVSLCF 531

Query: 445 FLYSAYRYKYRSEQKHGNDYE 465
           +L+ A  + Y+  Q   +D E
Sbjct: 532 YLFIANHFLYKKLQDKDDDVE 552

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H157|PTR19_ARATH Nitrate transporter 1.2 OS=Arabidopsis thaliana GN=NRT1.2 PE=1 SV=1

 Score =  286 bits (732), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 161/453 (35%), Positives = 256/453 (56%), Gaps = 20/453 (4%)

Query: 20  SCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS 79
           +CE     +   L+  LY+   G  GI+  ++S GA+QFDE +   +     FFN+F   
Sbjct: 132 TCEEVSGSKAAMLFVGLYLVALGVGGIKGSLASHGAEQFDESTPKGRKQRSTFFNYFVFC 191

Query: 80  VTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVA 139
           +  GA+VA T VV+++   GW   FG   IA+ +S ++F  G+  YR+++P GSPLT + 
Sbjct: 192 LACGALVAVTFVVWLEDNKGWEWGFGVSTIAIFVSILIFLSGSRFYRNKIPCGSPLTTIL 251

Query: 140 QVLVAAFRKRHAAFSSSELIGLYEV-PGKHSAIKGSGKIAHTDDF-----------RCLD 187
           +VL+AA  K  ++ SSS  +    V P  H   KG  ++    +            R   
Sbjct: 252 KVLLAASVKCCSSGSSSNAVASMSVSPSNHCVSKGKKEVESQGELEKPRQEEALPPRAQL 311

Query: 188 KAALELKEDVINPSPWKL---CTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQ 244
             +L++     +  P      CTV QVE+VK +++++PI ACTIMLN  L +  T SVQQ
Sbjct: 312 TNSLKVLNGAADEKPVHRLLECTVQQVEDVKIVLKMLPIFACTIMLNCCLAQLSTFSVQQ 371

Query: 245 AYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIG 304
           A +MNT +G LK+P   +P+FP + I ++  +Y    +P  R+ T    G + LQR+G+G
Sbjct: 372 AASMNTKIGSLKIPPASLPIFPVVFIMILAPIYDHLIIPFARKATKTETGVTHLQRIGVG 431

Query: 305 LAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVG 364
           L +SIL++  A + E  R+  A   G   S  T +P ++  W+ +QY  +G A++F + G
Sbjct: 432 LVLSILAMAVAALVEIKRKGVAKDSGLLDSKET-LP-VTFLWIALQYLFLGSADLFTLAG 489

Query: 365 LLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWL-AQNIN 423
           LLE+ + EAP +M+S+ ++ +  +  +G + +S++ SI+ S+TG+   G   WL  ++IN
Sbjct: 490 LLEYFFTEAPSSMRSLATSLSWASLAMGYYLSSVIVSIVNSITGS--SGNTPWLRGKSIN 547

Query: 424 TGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRS 456
             + DY YWL+ VLS  NF  +L+ A RYKYRS
Sbjct: 548 RYKLDYFYWLMCVLSAANFLHYLFWAMRYKYRS 580

Low-affinity proton-dependent nitrate transporter. Involved in constitutive nitrate uptake. Not involved in histidine or dipeptides transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL7|PTR3_ARATH Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1

 Score =  285 bits (729), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 166/452 (36%), Positives = 256/452 (56%), Gaps = 10/452 (2%)

Query: 20  SCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS 79
           +CE A   Q+   +  LY    G  G +P +S+ GADQFD      KT    FFN++  S
Sbjct: 137 NCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKTQKLSFFNWWMFS 196

Query: 80  VTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVA 139
           +  G + A T++VY+Q   GW   +G   + + IS  +F +GTP YRH+LP GSP T++A
Sbjct: 197 IFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTPFYRHKLPTGSPFTKMA 256

Query: 140 QVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVIN 199
           +V+VA+FRK +A   + ++   +E+P      KG+  I  T   R LD+A+L+   +   
Sbjct: 257 RVIVASFRKANAPM-THDITSFHELPSLEYERKGAFPIHPTPSLRFLDRASLKTGTN--- 312

Query: 200 PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM-GKLKLP 258
              W LCT T+VEE K ++R++P+   T + +++L +  TL V+Q  T++  + G   +P
Sbjct: 313 -HKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFVKQGTTLDRKVTGSFSIP 371

Query: 259 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIF 318
              +  F  LS+ + + LY   FV + R+ TG+PRG + LQR+GIGL   IL +I A + 
Sbjct: 372 PASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRMGIGLIFHILIMIVASVT 431

Query: 319 ERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 378
           ERYR   A  HG        +P L+ + LL Q+ L+G+A+ F  V  LEF Y++AP++MK
Sbjct: 432 ERYRLKVAADHGLIHQTGVKLP-LTIFALLPQFVLMGMADSFLEVAKLEFFYDQAPESMK 490

Query: 379 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLS 438
           S+G++Y+  +  +G F +S L S +  +T   KK    W+  N+N  R DY Y   AVL+
Sbjct: 491 SLGTSYSTTSLAIGNFMSSFLLSTVSEIT---KKRGRGWILNNLNESRLDYYYLFFAVLN 547

Query: 439 VINFCAFLYSAYRYKYRSEQKHGNDYEVMENK 470
           ++NF  FL     Y YR+E     D + +E K
Sbjct: 548 LVNFVLFLVVVKFYVYRAEVTDSVDVKEVEMK 579

Peptide transporter involved in stress tolerance in seeds during germination and in defense against virulent bacterial pathogens.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	476
224053581	638	predicted protein [Populus trichocarpa]	0.985	0.735	0.857	0.0
449468910	637	PREDICTED: probable peptide/nitrate tran	0.989	0.739	0.816	0.0
225425292	640	PREDICTED: probable peptide/nitrate tran	0.987	0.734	0.823	0.0
147866216	626	hypothetical protein VITISV_008303 [Viti	0.976	0.742	0.830	0.0
356569101	631	PREDICTED: probable peptide/nitrate tran	0.960	0.724	0.835	0.0
357501519	638	Peptide transporter-like protein [Medica	0.970	0.724	0.791	0.0
147771745	612	hypothetical protein VITISV_040927 [Viti	0.941	0.732	0.818	0.0
297811451	625	proton-dependent oligopeptide transport	0.953	0.726	0.813	0.0
15240621	624	putative peptide/nitrate transporter [Ar	0.953	0.727	0.807	0.0
296085541	606	unnamed protein product [Vitis vinifera]	0.915	0.719	0.763	0.0

>gi|224053581|ref|XP_002297883.1| predicted protein [Populus trichocarpa] gi|222845141|gb|EEE82688.1| predicted protein [Populus trichocarpa]

 Score =  843 bits (2178), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/470 (85%), Positives = 437/470 (92%), Gaps = 1/470 (0%)

Query: 1   MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 60
           M +FMP+Q  CD++S LLG+CEPAKSWQMLYL TVLY+TGFGAAGIRPCVSSFGADQFDE
Sbjct: 163 MNIFMPDQGQCDQLSLLLGNCEPAKSWQMLYLNTVLYVTGFGAAGIRPCVSSFGADQFDE 222

Query: 61  RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 120
           R ++YK+HLDRFFNFFYLSVT+GAIVAFTLVVYIQM+HGWGSAFG+LAIAMG+SNMLFFI
Sbjct: 223 RGENYKSHLDRFFNFFYLSVTIGAIVAFTLVVYIQMKHGWGSAFGSLAIAMGMSNMLFFI 282

Query: 121 GTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHT 180
           GTPLYRHRLPGGSPLTRVAQVLVAAF+KR A+FSSSELIGLYEVPGK SAIKGSGKIAHT
Sbjct: 283 GTPLYRHRLPGGSPLTRVAQVLVAAFQKRKASFSSSELIGLYEVPGKRSAIKGSGKIAHT 342

Query: 181 DDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTL 240
           DDFRCLDKAAL+LKED ++PSPW+LCTVTQVEEVK L++LVPIPACTIMLN+ILTE+LTL
Sbjct: 343 DDFRCLDKAALQLKEDGVDPSPWRLCTVTQVEEVKILIKLVPIPACTIMLNLILTEYLTL 402

Query: 241 SVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQR 300
           SVQQAYT+NTH+G LKLPVT MPVFP LSIFLILSLYYS FVP+ RRITGHPRGASQLQR
Sbjct: 403 SVQQAYTLNTHLGHLKLPVTSMPVFPCLSIFLILSLYYSVFVPIFRRITGHPRGASQLQR 462

Query: 301 VGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVF 360
           VGIGLA SILSV WA IFERYRR YAI HGYEFSFLT MP+LSAYWLLIQYCLIGIAEVF
Sbjct: 463 VGIGLAFSILSVAWAAIFERYRRKYAIEHGYEFSFLTPMPNLSAYWLLIQYCLIGIAEVF 522

Query: 361 CIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 420
           CIVGLLEFLYEEAPDAMKSIGSAYAALAGG+GCFAASILNSI+KSVTGNP K Q +WL+Q
Sbjct: 523 CIVGLLEFLYEEAPDAMKSIGSAYAALAGGIGCFAASILNSIVKSVTGNPDKRQQSWLSQ 582

Query: 421 NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENK 470
           NINTGRF+Y YWLL VLS INFCAFLYSA RYKYR+EQK G   EV+ NK
Sbjct: 583 NINTGRFEYFYWLLTVLSAINFCAFLYSARRYKYRAEQKFGIQ-EVVTNK 631

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468910|ref|XP_004152164.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Cucumis sativus] gi|449528581|ref|XP_004171282.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Cucumis sativus]

 Score =  823 bits (2126), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/473 (81%), Positives = 433/473 (91%), Gaps = 2/473 (0%)

Query: 1   MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 60
           +  F+PNQ  CD++S LLG CEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDE
Sbjct: 165 ISTFVPNQAKCDQLSLLLGRCEPAKPWQMTYLYTVLYLTGFGAAGIRPCVSSFGADQFDE 224

Query: 61  RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 120
           +SKDYK+HLDRFFNFFYLSVTVGAI+AFT VVYIQ++HGWG+AFG+LAIAMG SN++FF+
Sbjct: 225 KSKDYKSHLDRFFNFFYLSVTVGAIIAFTAVVYIQIKHGWGAAFGSLAIAMGFSNVVFFL 284

Query: 121 GTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHT 180
           GTPLYRHRLPGGSPLTRVAQVLVAA+RKR+A+FS+SE +GL+EVPGK SAIKGSGKI HT
Sbjct: 285 GTPLYRHRLPGGSPLTRVAQVLVAAYRKRNASFSNSEFVGLFEVPGKQSAIKGSGKILHT 344

Query: 181 DDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTL 240
           DDFRCLDKAAL+LKED  NPSPWKLCTVTQVEEVK L++L+PIPACTIMLN++LTE+LTL
Sbjct: 345 DDFRCLDKAALQLKEDGGNPSPWKLCTVTQVEEVKILLKLIPIPACTIMLNLVLTEYLTL 404

Query: 241 SVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQR 300
           SVQQAYTMNTH+G+LKLPVTCMPVFPGLSIFLILSLYYS FVPL RRITGHP GASQLQR
Sbjct: 405 SVQQAYTMNTHIGRLKLPVTCMPVFPGLSIFLILSLYYSVFVPLSRRITGHPHGASQLQR 464

Query: 301 VGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVF 360
           VGIGLA+SILSV WAG FERYRRN+AI  GYE SFL+ MP+LSAYWLLIQYCLIGIAEVF
Sbjct: 465 VGIGLAISILSVAWAGAFERYRRNFAIRSGYEASFLSPMPNLSAYWLLIQYCLIGIAEVF 524

Query: 361 CIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 420
           CIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAAS+LNSIIKSVTG+P    P+WL+Q
Sbjct: 525 CIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASLLNSIIKSVTGSPNGRNPSWLSQ 584

Query: 421 NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYD 473
           NINTGRFDY YWLL V+S+INFC FLYSA++YKYR + + G    +MEN ++D
Sbjct: 585 NINTGRFDYFYWLLTVMSIINFCIFLYSAHKYKYRKDHEVGEG--IMENGMHD 635

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425292|ref|XP_002272176.1| PREDICTED: probable peptide/nitrate transporter At5g13400 [Vitis vinifera]

 Score =  822 bits (2122), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/470 (82%), Positives = 427/470 (90%)

Query: 1   MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 60
           M +F+PNQD CD+ S LLGSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDE
Sbjct: 163 MNIFVPNQDQCDQFSLLLGSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDE 222

Query: 61  RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 120
           RS+DYKTHLDRFFNFFYLSVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFI
Sbjct: 223 RSRDYKTHLDRFFNFFYLSVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFI 282

Query: 121 GTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHT 180
           GTPLYRHRLPGGSPLTRVAQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HT
Sbjct: 283 GTPLYRHRLPGGSPLTRVAQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHT 342

Query: 181 DDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTL 240
           DDFRCLDKAAL+LKED   PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTL
Sbjct: 343 DDFRCLDKAALQLKEDGAAPSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTL 402

Query: 241 SVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQR 300
           SVQQAYT+NTH+G+LKLPVTCMPVFPGLSIFLILSLYYS FVP+ RRITGHP GASQLQR
Sbjct: 403 SVQQAYTLNTHIGRLKLPVTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQR 462

Query: 301 VGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVF 360
           VGIGLAVSILSV WAG+FERYRRNYAI  GYEF+FLT MP LSAYWLLIQYCLIGIAEVF
Sbjct: 463 VGIGLAVSILSVAWAGVFERYRRNYAIKQGYEFTFLTPMPHLSAYWLLIQYCLIGIAEVF 522

Query: 361 CIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 420
           CIVGLLEFLYEEAPDAM+SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++  P+WL+Q
Sbjct: 523 CIVGLLEFLYEEAPDAMRSIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQMHPSWLSQ 582

Query: 421 NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENK 470
           NINTGRFDYLYWLL V SVINFC FLYSA RYKYR  Q+   + E +  K
Sbjct: 583 NINTGRFDYLYWLLTVFSVINFCIFLYSAQRYKYRVAQEGTMEEEAVSKK 632

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866216|emb|CAN84143.1| hypothetical protein VITISV_008303 [Vitis vinifera]

 Score =  817 bits (2111), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/465 (83%), Positives = 425/465 (91%)

Query: 1   MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 60
           M +F+PNQD CD+ S LLGSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDE
Sbjct: 156 MNIFVPNQDQCDQFSLLLGSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDE 215

Query: 61  RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 120
           RS+DYKTHLDRFFNFFYLSVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFI
Sbjct: 216 RSRDYKTHLDRFFNFFYLSVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFI 275

Query: 121 GTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHT 180
           GTPLYRHRLPGGSPLTRVAQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HT
Sbjct: 276 GTPLYRHRLPGGSPLTRVAQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHT 335

Query: 181 DDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTL 240
           DDFRCLDKAAL+LKED   PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTL
Sbjct: 336 DDFRCLDKAALQLKEDGAAPSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTL 395

Query: 241 SVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQR 300
           SVQQAYT+NTH+G+LKLPVTCMPVFPGLSIFLILSLYYS FVP+ RRITGHP GASQLQR
Sbjct: 396 SVQQAYTLNTHIGRLKLPVTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQR 455

Query: 301 VGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVF 360
           VGIGLAVSILSV WAG+FERYRRNYAI  GYEF+FLT MP LSAYWLLIQYCLIGIAEVF
Sbjct: 456 VGIGLAVSILSVAWAGVFERYRRNYAIKQGYEFTFLTPMPHLSAYWLLIQYCLIGIAEVF 515

Query: 361 CIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 420
           CIVGLLEFLYEEAPDAM+SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++  P+WL+Q
Sbjct: 516 CIVGLLEFLYEEAPDAMRSIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQMHPSWLSQ 575

Query: 421 NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYE 465
           NINTGRFDYLYWLL V SVINFC FLYSA RYKYR  Q+   + E
Sbjct: 576 NINTGRFDYLYWLLTVFSVINFCIFLYSAQRYKYRVAQEGTMEEE 620

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569101|ref|XP_003552744.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Glycine max]

 Score =  813 bits (2100), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/457 (83%), Positives = 418/457 (91%)

Query: 4   FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 63
           F+PNQ+ CD+ S LLG+CE AK WQM YLYT LYIT FGAAGIRPCVSSFGADQFDERSK
Sbjct: 162 FVPNQEECDQFSLLLGNCEAAKPWQMTYLYTALYITAFGAAGIRPCVSSFGADQFDERSK 221

Query: 64  DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 123
           +YK HLDRFFN FYLSVT+GAIVAFT+VVY+QM+ GWGSAFG+LAIAMGISNM+FFIGTP
Sbjct: 222 NYKAHLDRFFNIFYLSVTIGAIVAFTVVVYVQMKFGWGSAFGSLAIAMGISNMVFFIGTP 281

Query: 124 LYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDF 183
           LYRHRLPGGSPLTRVAQVLVAAFRKR+A+F SSE IGLYEVPG+ SAIKGS KI+HTDDF
Sbjct: 282 LYRHRLPGGSPLTRVAQVLVAAFRKRNASFGSSEFIGLYEVPGRQSAIKGSRKISHTDDF 341

Query: 184 RCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQ 243
           R LDKAAL+LKED  NPSPW+LCTVTQVEEVK L++L+PIPACTIMLNV+LTEFLTLSVQ
Sbjct: 342 RFLDKAALQLKEDGANPSPWRLCTVTQVEEVKILMKLIPIPACTIMLNVVLTEFLTLSVQ 401

Query: 244 QAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGI 303
           QAYT+NTH+G+LKLPVTCMPVFPGLS+FLILSLYYS FVP+ RRITGHP GASQLQRVGI
Sbjct: 402 QAYTLNTHLGRLKLPVTCMPVFPGLSVFLILSLYYSIFVPVFRRITGHPHGASQLQRVGI 461

Query: 304 GLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIV 363
           GLAVSILSV WA IFERYRRNYAI HGY  SFLTAMP+LSAYWLLIQYCLIG+AEVFCIV
Sbjct: 462 GLAVSILSVAWAAIFERYRRNYAIKHGYLASFLTAMPNLSAYWLLIQYCLIGVAEVFCIV 521

Query: 364 GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN 423
           GLLEFLYEEAPDAMKSIGSAYAALAGGLGCF A+I+N+IIKS TGN  KGQP+WL+QNIN
Sbjct: 522 GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFVATIINNIIKSATGNLDKGQPSWLSQNIN 581

Query: 424 TGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKH 460
           TGRFDY YWLL  LS+INF  F+YSA+RYKYR  Q H
Sbjct: 582 TGRFDYFYWLLTALSIINFAIFVYSAHRYKYREHQVH 618

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501519|ref|XP_003621048.1| Peptide transporter-like protein [Medicago truncatula] gi|355496063|gb|AES77266.1| Peptide transporter-like protein [Medicago truncatula]

 Score =  795 bits (2053), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/469 (79%), Positives = 420/469 (89%), Gaps = 7/469 (1%)

Query: 1   MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 60
           M +F+PNQ+NCD++S LLG+CEPAK WQM YLYTVLYIT FGAAGIRPCVSSFGADQFDE
Sbjct: 158 MSIFVPNQENCDQLSLLLGNCEPAKPWQMTYLYTVLYITAFGAAGIRPCVSSFGADQFDE 217

Query: 61  RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 120
           RSK+YK+HLDRFFN FYLSVT+GAI+AFT VVY+QM+ GWGSAFG+LAIAMG+SNMLFFI
Sbjct: 218 RSKNYKSHLDRFFNLFYLSVTIGAIIAFTAVVYVQMKLGWGSAFGSLAIAMGVSNMLFFI 277

Query: 121 GTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHT 180
           GTPLYRHRLPGGSPLTRVAQVLVAA+RKR  +F +SE++GLYEVPG+ SAIKGS KIAHT
Sbjct: 278 GTPLYRHRLPGGSPLTRVAQVLVAAYRKRKESFGNSEVVGLYEVPGRRSAIKGSQKIAHT 337

Query: 181 DDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTL 240
           DDFR LDKAAL+LK+D  NPS W LCTVTQVEEVK L++L+PIPACTIMLNVILTEFLTL
Sbjct: 338 DDFRFLDKAALQLKQDGPNPSQWNLCTVTQVEEVKILIKLIPIPACTIMLNVILTEFLTL 397

Query: 241 SVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQR 300
           SVQQAYT+NTH+GKLKLPVTCMPVFPGLS+FLIL+LYY TFVPL +RITGHP GASQLQR
Sbjct: 398 SVQQAYTLNTHLGKLKLPVTCMPVFPGLSVFLILALYYQTFVPLFKRITGHPHGASQLQR 457

Query: 301 VGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVF 360
           +GIGL VSILSV WA IFE+YRRNYAI + +E SFLT MP+LSAYWLLIQYCLIG+AEVF
Sbjct: 458 IGIGLGVSILSVAWAAIFEKYRRNYAIKNEFEASFLTPMPNLSAYWLLIQYCLIGVAEVF 517

Query: 361 CIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 420
           CIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCF A+ +NS++KS TGN  K Q +WL+Q
Sbjct: 518 CIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFFATFINSVVKSATGNSDKRQESWLSQ 577

Query: 421 NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQ-------KHGN 462
           NINTG+FDY YW+L  LS++NFC FLYSA+RYKYR++        KH N
Sbjct: 578 NINTGKFDYFYWVLTALSLVNFCIFLYSAHRYKYRTQHVYEMESIKHDN 626

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771745|emb|CAN78165.1| hypothetical protein VITISV_040927 [Vitis vinifera]

 Score =  788 bits (2035), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/458 (81%), Positives = 413/458 (90%), Gaps = 10/458 (2%)

Query: 1   MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 60
           M +F+PNQD CD+ S LLGSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDE
Sbjct: 163 MNIFVPNQDQCDQFSLLLGSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDE 222

Query: 61  RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 120
           RS+DYKTHLDRFFNFFYLSVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFI
Sbjct: 223 RSRDYKTHLDRFFNFFYLSVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFI 282

Query: 121 GTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHT 180
           GTPLYRHRLPGGSPLTRVAQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HT
Sbjct: 283 GTPLYRHRLPGGSPLTRVAQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHT 342

Query: 181 DDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTL 240
           DDFR          +D   PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTL
Sbjct: 343 DDFR----------KDGAAPSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTL 392

Query: 241 SVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQR 300
           SVQQAYT+NTH+G+LKLPVTCMPVFPGLSIFLILSLYYS FVP+ RRITGHP GASQLQR
Sbjct: 393 SVQQAYTLNTHIGRLKLPVTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQR 452

Query: 301 VGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVF 360
           VGIGLAVSILSV WAG+FERYRRNYAI  GYEF+FLT MP LSAYWLLIQYCLIGIAEVF
Sbjct: 453 VGIGLAVSILSVAWAGVFERYRRNYAIKQGYEFTFLTPMPHLSAYWLLIQYCLIGIAEVF 512

Query: 361 CIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 420
           CIVGLLEFLYEEAPDAM+SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++  P+WL+Q
Sbjct: 513 CIVGLLEFLYEEAPDAMRSIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQMHPSWLSQ 572

Query: 421 NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQ 458
           NINTGRFDYLYWLL V SVINFC FLYSA RYKYR+ Q
Sbjct: 573 NINTGRFDYLYWLLTVFSVINFCIFLYSAQRYKYRAFQ 610

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811451|ref|XP_002873609.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297319446|gb|EFH49868.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  781 bits (2017), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/456 (81%), Positives = 416/456 (91%), Gaps = 2/456 (0%)

Query: 1   MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 60
           +K+F+P+Q NC ++S LLG+CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE
Sbjct: 160 LKMFVPDQSNCGQLSLLLGNCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 219

Query: 61  RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 120
           +SKDYKTHLDRFFNFFYLSVT+GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF 
Sbjct: 220 KSKDYKTHLDRFFNFFYLSVTLGAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFA 279

Query: 121 GTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHT 180
           GTPLYRHRLPGGSPLTRVAQVLVAAFRKR+AAF+SSE IGLYEVPG  SAI GS KI H+
Sbjct: 280 GTPLYRHRLPGGSPLTRVAQVLVAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHS 339

Query: 181 DDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTL 240
           DDF  LDKAAL+LKED + PSPWKLCTVTQVEEVK L+RL+PIPACTIML+++LTE+LTL
Sbjct: 340 DDFIWLDKAALQLKEDGLEPSPWKLCTVTQVEEVKILIRLIPIPACTIMLSLVLTEYLTL 399

Query: 241 SVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQR 300
           SVQQAYT+NTH+  LKLPVTCMPVFPGLSIFLILSLYYS FVP+ RRITG+P GASQLQR
Sbjct: 400 SVQQAYTLNTHIQHLKLPVTCMPVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQR 459

Query: 301 VGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVF 360
           VGIGLAVSI+SV WAG+FE YRR+YAI HG+EF+FLT MPDL+AYWLLIQYCLIGIAEVF
Sbjct: 460 VGIGLAVSIISVAWAGLFENYRRHYAIQHGFEFNFLTQMPDLTAYWLLIQYCLIGIAEVF 519

Query: 361 CIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 420
           CIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAA+ILN+I+K+ T +      +WL+Q
Sbjct: 520 CIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAATILNNIVKAATRDSDG--KSWLSQ 577

Query: 421 NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRS 456
           NINTGRFD LYWLL +LS +NFC FL+SA+RYKYR+
Sbjct: 578 NINTGRFDCLYWLLTLLSFLNFCVFLWSAHRYKYRA 613

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240621|ref|NP_196844.1| putative peptide/nitrate transporter [Arabidopsis thaliana] gi|75335666|sp|Q9LYR6.1|PTR49_ARATH RecName: Full=Probable peptide/nitrate transporter At5g13400 gi|7543907|emb|CAB87147.1| peptide transporter-like protein [Arabidopsis thaliana] gi|18252225|gb|AAL61945.1| peptide transporter-like protein [Arabidopsis thaliana] gi|22136152|gb|AAM91154.1| peptide transporter-like protein [Arabidopsis thaliana] gi|332004507|gb|AED91890.1| putative peptide/nitrate transporter [Arabidopsis thaliana]

 Score =  773 bits (1997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/456 (80%), Positives = 414/456 (90%), Gaps = 2/456 (0%)

Query: 1   MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 60
           +K+F+P+Q NC ++S LLG+CE AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE
Sbjct: 159 LKMFVPDQSNCGQLSLLLGNCEEAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218

Query: 61  RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 120
           +SKDYKTHLDRFFNFFYLSVT+GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF 
Sbjct: 219 KSKDYKTHLDRFFNFFYLSVTLGAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFA 278

Query: 121 GTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHT 180
           GTPLYRHRLPGGSPLTRVAQVLVAAFRKR+AAF+SSE IGLYEVPG  SAI GS KI H+
Sbjct: 279 GTPLYRHRLPGGSPLTRVAQVLVAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHS 338

Query: 181 DDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTL 240
           +DF  LDKAALELKED + PSPWKLCTVTQVEEVK L+RL+PIP CTIML+++LTE+LTL
Sbjct: 339 NDFIWLDKAALELKEDGLEPSPWKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTL 398

Query: 241 SVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQR 300
           SVQQAYT+NTH+  LKLPVTCMPVFPGLSIFLILSLYYS FVP+ RRITG+P GASQLQR
Sbjct: 399 SVQQAYTLNTHIQHLKLPVTCMPVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQR 458

Query: 301 VGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVF 360
           VGIGLAVSI+SV WAG+FE YRR+YAI +G+EF+FLT MPDL+AYWLLIQYCLIGIAEVF
Sbjct: 459 VGIGLAVSIISVAWAGLFENYRRHYAIQNGFEFNFLTQMPDLTAYWLLIQYCLIGIAEVF 518

Query: 361 CIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 420
           CIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAA+ILN+I+K+ T +      +WL+Q
Sbjct: 519 CIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAATILNNIVKAATRDSDG--KSWLSQ 576

Query: 421 NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRS 456
           NINTGRFD LYWLL +LS +NFC FL+SA+RYKYR+
Sbjct: 577 NINTGRFDCLYWLLTLLSFLNFCVFLWSAHRYKYRA 612

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085541|emb|CBI29273.3| unnamed protein product [Vitis vinifera]

 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/470 (76%), Positives = 397/470 (84%), Gaps = 34/470 (7%)

Query: 1   MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 60
           M +F+PNQD CD+ S LLGSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDE
Sbjct: 163 MNIFVPNQDQCDQFSLLLGSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDE 222

Query: 61  RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 120
           RS+DYKTHLDRFFNFFYLSVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFI
Sbjct: 223 RSRDYKTHLDRFFNFFYLSVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFI 282

Query: 121 GTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHT 180
           GTPLYRHRLPGGSPLTRVAQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HT
Sbjct: 283 GTPLYRHRLPGGSPLTRVAQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHT 342

Query: 181 DDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTL 240
           DDFRCLDKAAL+LKED   PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTL
Sbjct: 343 DDFRCLDKAALQLKEDGAAPSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTL 402

Query: 241 SVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQR 300
           SVQQAYT+NTH+G+LKLPVTCMPVFPGLSIFLILSLYYS FVP+ RRITGHP GASQLQR
Sbjct: 403 SVQQAYTLNTHIGRLKLPVTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQR 462

Query: 301 VGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVF 360
           VGIGLAVSILSV WAG                                  YCLIGIAEVF
Sbjct: 463 VGIGLAVSILSVAWAG----------------------------------YCLIGIAEVF 488

Query: 361 CIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 420
           CIVGLLEFLYEEAPDAM+SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++  P+WL+Q
Sbjct: 489 CIVGLLEFLYEEAPDAMRSIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQMHPSWLSQ 548

Query: 421 NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENK 470
           NINTGRFDYLYWLL V SVINFC FLYSA RYKYR  Q+   + E +  K
Sbjct: 549 NINTGRFDYLYWLLTVFSVINFCIFLYSAQRYKYRVAQEGTMEEEAVSKK 598

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	476
TAIR|locus:2181655	624	AT5G13400 [Arabidopsis thalian	0.953	0.727	0.747	1e-185
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.901	0.752	0.409	9.6e-89
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.911	0.761	0.406	2.1e-84
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.915	0.745	0.393	3.1e-83
TAIR|locus:2018032	590	PTR6 "peptide transporter 6" [	0.855	0.689	0.414	3.7e-80
TAIR|locus:2026884	596	AT1G68570 [Arabidopsis thalian	0.915	0.731	0.376	1.1e-74
TAIR|locus:2041140	545	PTR4 "peptide transporter 4" [	0.523	0.456	0.361	2.6e-71
TAIR|locus:2161428	586	AT5G46040 [Arabidopsis thalian	0.934	0.759	0.341	8.9e-70
TAIR|locus:2161438	582	PTR3 "peptide transporter 3" [	0.928	0.759	0.347	2.4e-69
TAIR|locus:2196739	585	NRT1:2 "AT1G69850" [Arabidopsi	0.909	0.740	0.357	1e-68

TAIR|locus:2181655 AT5G13400 [Arabidopsis thaliana (taxid:3702)]

 Score = 1801 (639.0 bits), Expect = 1.0e-185, P = 1.0e-185
 Identities = 341/456 (74%), Positives = 387/456 (84%)

Query:     1 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 60
             +K+F+P+Q NC ++S LLG+CE AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE
Sbjct:   159 LKMFVPDQSNCGQLSLLLGNCEEAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218

Query:    61 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 120
             +SKDYKTHLDRFFNFFYLSVT+GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF 
Sbjct:   219 KSKDYKTHLDRFFNFFYLSVTLGAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFA 278

Query:   121 GTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHT 180
             GTPLYRHRLPGGSPLTRVAQVLVAAFRKR+AAF+SSE IGLYEVPG  SAI GS KI H+
Sbjct:   279 GTPLYRHRLPGGSPLTRVAQVLVAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHS 338

Query:   181 DDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTL 240
             +DF  LDKAALELKED + PSPWKLCTVTQVEEVK L+RL+PIP CTIML+++LTE+LTL
Sbjct:   339 NDFIWLDKAALELKEDGLEPSPWKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTL 398

Query:   241 SVQQAYTMNTHMGKLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQR 300
             SVQQAYT+NTH+  LKLPVTCMPVFPG             FVP+ RRITG+P GASQLQR
Sbjct:   399 SVQQAYTLNTHIQHLKLPVTCMPVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQR 458

Query:   301 VGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVF 360
             VGIGLAVSI+SV WAG+FE YRR+YAI +G+EF+FLT MPDL+AYWLLIQYCLIGIAEVF
Sbjct:   459 VGIGLAVSIISVAWAGLFENYRRHYAIQNGFEFNFLTQMPDLTAYWLLIQYCLIGIAEVF 518

Query:   361 CIVGLLEFLYEEAPDAMKSIXXXXXXXXXXXXXXXXXILNSIIKSVTGNPKKGQPNWLAQ 420
             CIVGLLEFLYEEAPDAMKSI                 ILN+I+K+ T +   G+ +WL+Q
Sbjct:   519 CIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAATILNNIVKAATRD-SDGK-SWLSQ 576

Query:   421 NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRS 456
             NINTGRFD LYWLL +LS +NFC FL+SA+RYKYR+
Sbjct:   577 NINTGRFDCLYWLLTLLSFLNFCVFLWSAHRYKYRA 612

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 886 (316.9 bits), Expect = 9.6e-89, P = 9.6e-89
 Identities = 180/440 (40%), Positives = 261/440 (59%)

Query:    20 SCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS 79
             +C P  S Q    +  LY+   G  GI+PCVSSFGADQFDE  ++ K     FFN+FY S
Sbjct:   131 TCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFS 189

Query:    80 VTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVA 139
             + VGA++A T++V+IQM  GWG  FG   +AM I+   FF G+  YR + PGGSPLTR+ 
Sbjct:   190 INVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIF 249

Query:   140 QVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVIN 199
             QV+VAAFRK        + + L+E     S IKGS K+ HTD+ +  DKAA+E + D I 
Sbjct:   250 QVIVAAFRKISVKVPEDKSL-LFETADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIK 308

Query:   200 P---SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGK-L 255
                 +PW+LC+VTQVEE+K+++ L+P+ A  I+   + ++  T+ V Q  TM+ HMGK  
Sbjct:   309 DGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNF 368

Query:   256 KLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWA 315
             ++P   + +F                +PL R+ T + RG +QLQR+GIGL VSI ++I A
Sbjct:   369 EIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITA 428

Query:   316 GIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD 375
             G+ E  R +Y  +H    ++      +S +W + QY LIG AEVF  +G LEF Y++APD
Sbjct:   429 GVLEVVRLDYVKTHN---AYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPD 485

Query:   376 AMKSIXXXXXXXXXXXXXXXXXILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLA 435
             AM+S+                 +L +++  +T   K G+P W+  N+N G  DY ++LLA
Sbjct:   486 AMRSLCSALSLTTVALGNYLSTVLVTVVMKIT--KKNGKPGWIPDNLNRGHLDYFFYLLA 543

Query:   436 VLSVINFCAFLYSAYRYKYR 455
              LS +NF  +L+ + RYKY+
Sbjct:   544 TLSFLNFLVYLWISKRYKYK 563

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 845 (302.5 bits), Expect = 2.1e-84, P = 2.1e-84
 Identities = 181/445 (40%), Positives = 255/445 (57%)

Query:    20 SCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS 79
             +C  A + Q    +  LY+   G  GI+PCVSSFGADQFD+  +  K     FFN+FY  
Sbjct:   131 TCH-ATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFV 189

Query:    80 VTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVA 139
             + VGA++A +++V+IQM  GWG   G   +AM I+ + FF G+  YR + PGGSPLTR+ 
Sbjct:   190 INVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRML 249

Query:   140 QVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKED--- 196
             QV+VA+ RK        E + LYE     S+I GS K+ HT      DKAA+E + D   
Sbjct:   250 QVIVASCRKSKVKIPEDESL-LYENQDAESSIIGSRKLEHTKILTFFDKAAVETESDNKG 308

Query:   197 VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMG-KL 255
                 S WKLCTVTQVEE+K L+RL+PI A  I+   + ++  T+ V Q  T++ HMG   
Sbjct:   309 AAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNF 368

Query:   256 KLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWA 315
             K+P   + +F                VP  R+ TGH RG +QLQR+GIGL +SI S++ A
Sbjct:   369 KIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSA 428

Query:   316 GIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD 375
             GI E  R NY  +H   ++  T +P ++ +W + QY L+G AEVF  +G LEF Y++APD
Sbjct:   429 GILEVARLNYVQTHNL-YNEET-IP-MTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPD 485

Query:   376 AMKSIXXXXXXXXXXXXXXXXXILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLA 435
             AM+S+                  L +++  VT +   G+P W+A+N+N G  DY +WLLA
Sbjct:   486 AMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSG--GRPGWIAKNLNNGHLDYFFWLLA 543

Query:   436 VLSVINFCAFLYSAYRYKYRSEQKH 460
              LS +NF  +L+ A  Y Y+    H
Sbjct:   544 GLSFLNFLVYLWIAKWYTYKKTTGH 568

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 834 (298.6 bits), Expect = 3.1e-83, P = 3.1e-83
 Identities = 175/445 (39%), Positives = 256/445 (57%)

Query:    15 SQLLGS-CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 73
             ++ +G  C  A   Q    +  LY+   G  GI+PCVSSFGADQFD+     +     FF
Sbjct:   142 AECIGDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFF 201

Query:    74 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 133
             N+FY S+ +GA+V+ +L+V+IQ   GWG  FG   + MG++   FF GTPLYR + PGGS
Sbjct:   202 NWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGS 261

Query:   134 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 193
             P+TR++QV+VA+FRK          + LYE   K+SAI GS KI HTDD + LDKAA+  
Sbjct:   262 PITRISQVVVASFRKSSVKVPEDATL-LYETQDKNSAIAGSRKIEHTDDCQYLDKAAVIS 320

Query:   194 KEDVIN---PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 250
             +E+  +    + W+LCTVTQVEE+K L+R+ PI A  I+ + +  +  T+ VQQ   MN 
Sbjct:   321 EEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNC 380

Query:   251 HMGKLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIGLAVSIL 310
              +G  +LP   +  F                VPL R+ TG  +G +++QR+GIGL VS+L
Sbjct:   381 KIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVL 440

Query:   311 SVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLY 370
              +  A I E  R + A   G   S    +P +S  W + QY ++G AEVF  +G LEF Y
Sbjct:   441 CMAAAAIVEIIRLHMANDLGLVESG-APVP-ISVLWQIPQYFILGAAEVFYFIGQLEFFY 498

Query:   371 EEAPDAMKSIXXXXXXXXXXXXXXXXXILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYL 430
             +++PDAM+S+                 ++ +++   T   + GQ  W++ N+N+G  DY 
Sbjct:   499 DQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFT--TRNGQEGWISDNLNSGHLDYF 556

Query:   431 YWLLAVLSVINFCAFLYSAYRYKYR 455
             +WLLA LS++N   + +SA RYK +
Sbjct:   557 FWLLAGLSLVNMAVYFFSAARYKQK 581

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
 Identities = 176/425 (41%), Positives = 243/425 (57%)

Query:    21 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 80
             C PA + Q    +T LY+   G  GI+PCVSSFGADQFD+     +     FFN+FY S+
Sbjct:   163 CSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFNWFYFSI 222

Query:    81 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQ 140
              +G+ ++ TL+V++Q   GWG  F    + MG+S   FFIGTPLYR + PGGSP+TRV Q
Sbjct:   223 NIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITRVCQ 282

Query:   141 VLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAAL----ELKED 196
             VLVAA+RK        ++  LYE   K+S I GS KI HTD ++ LDKAA+    E K  
Sbjct:   283 VLVAAYRKLKLNLPE-DISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEYESKSG 341

Query:   197 VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLK 256
               + +PWKLCTVTQVEEVKTL+R+ PI A  I+ +V+ ++  TL VQQ  +MN  +   +
Sbjct:   342 AFS-NPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNRIIRSFE 400

Query:   257 LPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAG 316
             +P     VF                VP  RR TG P+G + LQR+GIGL +S+LS+  A 
Sbjct:   401 IPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLSIAAAA 460

Query:   317 IFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA 376
             I E  R   A     +F    AM   S +W + QY L+GIAEVF  +G +EF Y+E+PDA
Sbjct:   461 IVETVRLQLA----QDF---VAM---SIFWQIPQYILMGIAEVFFFIGRVEFFYDESPDA 510

Query:   377 MKSIXXXXXXXXXXXXXXXXXILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAV 436
             M+S+                 ++ +++   T     G+  W+  ++N G  DY +WLL  
Sbjct:   511 MRSVCSALALLNTAVGSYLSSLILTLVAYFTA--LGGKDGWVPDDLNKGHLDYFFWLLVS 568

Query:   437 LSVIN 441
             L ++N
Sbjct:   569 LGLVN 573

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)]

 Score = 733 (263.1 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
 Identities = 168/446 (37%), Positives = 239/446 (53%)

Query:    21 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 80
             C  A + Q+  LY  L +   G+ GIRPCV +FGADQFDE   +  T    +FN++Y  +
Sbjct:   132 CVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCM 191

Query:    81 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQ 140
                 ++A T++V+IQ   GWG   G   +AM +S + F  G  LYRH +P GSP TR+ Q
Sbjct:   192 GAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQ 251

Query:   141 VLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINP 200
             V VAAFRKR     S   + LY      + I   GK+ HT     LDKAA+  +ED + P
Sbjct:   252 VGVAAFRKRKLRMVSDPSL-LYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTEEDNLKP 310

Query:   201 S--P--WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM-GKL 255
                P  W+L TV +VEE+K+++R+ PI A  I+L     +  T S+QQA TMN H+    
Sbjct:   311 GQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSF 370

Query:   256 KLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWA 315
             ++P   M VF               FV + R+ TG  RG + L R+GIG  +SI++ + A
Sbjct:   371 QIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISIIATLVA 430

Query:   316 GIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD 375
             G  E  R++ AI HG      T +P +S  WL+ QY L G+AE F  +G LEF Y++AP+
Sbjct:   431 GFVEVKRKSVAIEHGLLDKPHTIVP-ISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPE 489

Query:   376 AMKSIXXXXXXXXXXXXXXXXXILNSIIKSVTGNPKKGQPNWLAQN-INTGRFDYLYWLL 434
             +M+S                  +L +++   +  P  G  NWL  N +N GR +Y YWL+
Sbjct:   490 SMRSTATALFWMAISIGNYVSTLLVTLVHKFSAKPD-GS-NWLPDNNLNRGRLEYFYWLI 547

Query:   435 AVLSVINFCAFLYSAYRYKYRSEQKH 460
              VL  +N   +L+ A  Y Y+  Q H
Sbjct:   548 TVLQAVNLVYYLWCAKIYTYKPVQVH 573

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2041140 PTR4 "peptide transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 2.6e-71, Sum P(2) = 2.6e-71
 Identities = 93/257 (36%), Positives = 140/257 (54%)

Query:   199 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP 258
             N +PWKLCTVTQVEEVK L+RLVPI A  I+ +V+ ++  TL VQQ   M   +G  ++P
Sbjct:   293 NTNPWKLCTVTQVEEVKILLRLVPIWASGIIFSVLHSQIYTLFVQQGRCMKRTIGLFEIP 352

Query:   259 VTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIF 318
                + +F                VPL RR TG  +G ++LQR+GIGL VS+LS+ +A I 
Sbjct:   353 PATLGMFDTASVLISVPIYDRVIVPLVRRFTGLAKGFTELQRMGIGLFVSVLSLTFAAIV 412

Query:   319 ERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 378
             E  R   A       S    +P L+ +W + QY L+G A VF  VG +EF YE++PD+M+
Sbjct:   413 ETVRLQLARDLDLVESG-DIVP-LNIFWQIPQYFLMGTAGVFFFVGRIEFFYEQSPDSMR 470

Query:   379 SIXXXXXXXXXXXXXXXXXILNSIIKSVTGNPKKGQPNWL-AQNINTGRFDYLYWLLAVL 437
             S+                 ++ +++  ++G     +  W+ + NIN G  DY +WLL  L
Sbjct:   471 SLCSAWALLTTTLGNYLSSLIITLVAYLSG-----KDCWIPSDNINNGHLDYFFWLLVSL 525

Query:   438 SVINFCAFLYSAYRYKY 454
               +N   F++ + +Y +
Sbjct:   526 GSVNIPVFVFFSVKYTH 542

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2161428 AT5G46040 [Arabidopsis thaliana (taxid:3702)]

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 156/457 (34%), Positives = 243/457 (53%)

Query:    20 SCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS 79
             +CE A   Q+   +  LY    G  G +P +S+ GADQFDE     K H   FFN++  S
Sbjct:   137 NCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKIHKHSFFNWWMFS 196

Query:    80 VTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVA 139
             +  G   A T++VY+Q   GW   +G   + +  S  +F +GT LYRH+LP GSP T++A
Sbjct:   197 IFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGTRLYRHKLPMGSPFTKMA 256

Query:   140 QVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVIN 199
             +V+VA+ RK     SS      YE+P    A K +  I  T   R L++A+L+      +
Sbjct:   257 RVIVASLRKAREPMSSDST-RFYELPPMEYASKRAFPIHSTSSLRFLNRASLKTG----S 311

Query:   200 PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM-GKLKLP 258
                W+LCT+T+VEE K +++++P+   T + +++L + +TL ++Q  T++  +     +P
Sbjct:   312 THKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFIKQGTTLDRRLTNNFSIP 371

Query:   259 VTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIF 318
                +  F               FV   R++TG+PRG + LQR+GIG+ + IL +I A I 
Sbjct:   372 PASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLLQRMGIGMILHILIMIIASIT 431

Query:   319 ERYRRNYAISHGYEFSFLTAMP-DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM 377
             ERYR   A  HG   +  TA+P  LS + LL QY L+G+A+ F  +  LEF Y++AP++M
Sbjct:   432 ERYRLKVAAEHG--LTHQTAVPIPLSIFTLLPQYVLMGLADAFIEIAKLEFFYDQAPESM 489

Query:   378 KSIXXXXXXXXXXXXXXXXXILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVL 437
             KS+                 IL S +  +T   K+G+  W+  N+N  R D  Y   AVL
Sbjct:   490 KSLGTSYTSTSMAVGYFMSSILLSSVSQIT--KKQGR-GWIQNNLNESRLDNYYMFFAVL 546

Query:   438 SVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYDS 474
             +++NF  FL     Y+YR++     + E  E  + D+
Sbjct:   547 NLLNFILFLVVIRFYEYRADVTQSANVEQKEPNMVDN 583

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP

TAIR|locus:2161438 PTR3 "peptide transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
 Identities = 157/452 (34%), Positives = 240/452 (53%)

Query:    20 SCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS 79
             +CE A   Q+   +  LY    G  G +P +S+ GADQFD      KT    FFN++  S
Sbjct:   137 NCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKTQKLSFFNWWMFS 196

Query:    80 VTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVA 139
             +  G + A T++VY+Q   GW   +G   + + IS  +F +GTP YRH+LP GSP T++A
Sbjct:   197 IFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTPFYRHKLPTGSPFTKMA 256

Query:   140 QVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVIN 199
             +V+VA+FRK +A  +  ++   +E+P      KG+  I  T   R LD+A+L+   +   
Sbjct:   257 RVIVASFRKANAPMTH-DITSFHELPSLEYERKGAFPIHPTPSLRFLDRASLKTGTN--- 312

Query:   200 PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM-GKLKLP 258
                W LCT T+VEE K ++R++P+   T + +++L +  TL V+Q  T++  + G   +P
Sbjct:   313 -HKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFVKQGTTLDRKVTGSFSIP 371

Query:   259 VTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIF 318
                +  F               FV + R+ TG+PRG + LQR+GIGL   IL +I A + 
Sbjct:   372 PASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRMGIGLIFHILIMIVASVT 431

Query:   319 ERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 378
             ERYR   A  HG        +P L+ + LL Q+ L+G+A+ F  V  LEF Y++AP++MK
Sbjct:   432 ERYRLKVAADHGLIHQTGVKLP-LTIFALLPQFVLMGMADSFLEVAKLEFFYDQAPESMK 490

Query:   379 SIXXXXXXXXXXXXXXXXXILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLS 438
             S+                  L S +  +T   K+G+  W+  N+N  R DY Y   AVL+
Sbjct:   491 SLGTSYSTTSLAIGNFMSSFLLSTVSEIT--KKRGR-GWILNNLNESRLDYYYLFFAVLN 547

Query:   439 VINFCAFLYSAYRYKYRSEQKHGNDYEVMENK 470
             ++NF  FL     Y YR+E     D + +E K
Sbjct:   548 LVNFVLFLVVVKFYVYRAEVTDSVDVKEVEMK 579

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS;RCA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0042538 "hyperosmotic salinity response" evidence=IMP

GO:0043201 "response to leucine" evidence=IEP

GO:0080052 "response to histidine" evidence=IEP

GO:0080053 "response to phenylalanine" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IGI

GO:0042937 "tripeptide transporter activity" evidence=IGI

GO:0042938 "dipeptide transport" evidence=IGI

GO:0042939 "tripeptide transport" evidence=IGI

TAIR|locus:2196739 NRT1:2 "AT1G69850" [Arabidopsis thaliana (taxid:3702)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 162/453 (35%), Positives = 245/453 (54%)

Query:    20 SCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS 79
             +CE     +   L+  LY+   G  GI+  ++S GA+QFDE +   +     FFN+F   
Sbjct:   132 TCEEVSGSKAAMLFVGLYLVALGVGGIKGSLASHGAEQFDESTPKGRKQRSTFFNYFVFC 191

Query:    80 VTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVA 139
             +  GA+VA T VV+++   GW   FG   IA+ +S ++F  G+  YR+++P GSPLT + 
Sbjct:   192 LACGALVAVTFVVWLEDNKGWEWGFGVSTIAIFVSILIFLSGSRFYRNKIPCGSPLTTIL 251

Query:   140 QVLVAAFRKRHAAFSSSELIGLYEV-PGKHSAIKGS------GKIAHTDDFRCLD-KAAL 191
             +VL+AA  K  ++ SSS  +    V P  H   KG       G++        L  +A L
Sbjct:   252 KVLLAASVKCCSSGSSSNAVASMSVSPSNHCVSKGKKEVESQGELEKPRQEEALPPRAQL 311

Query:   192 ELKEDVINPS----P-WKL--CTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQ 244
                  V+N +    P  +L  CTV QVE+VK +++++PI ACTIMLN  L +  T SVQQ
Sbjct:   312 TNSLKVLNGAADEKPVHRLLECTVQQVEDVKIVLKMLPIFACTIMLNCCLAQLSTFSVQQ 371

Query:   245 AYTMNTHMGKLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIG 304
             A +MNT +G LK+P   +P+FP               +P  R+ T    G + LQR+G+G
Sbjct:   372 AASMNTKIGSLKIPPASLPIFPVVFIMILAPIYDHLIIPFARKATKTETGVTHLQRIGVG 431

Query:   305 LAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVG 364
             L +SIL++  A + E  R+  A   G   S  T +P ++  W+ +QY  +G A++F + G
Sbjct:   432 LVLSILAMAVAALVEIKRKGVAKDSGLLDSKET-LP-VTFLWIALQYLFLGSADLFTLAG 489

Query:   365 LLEFLYEEAPDAMKSIXXXXXXXXXXXXXXXXXILNSIIKSVTGNPKKGQPNWL-AQNIN 423
             LLE+ + EAP +M+S+                 ++ SI+ S+TG+   G   WL  ++IN
Sbjct:   490 LLEYFFTEAPSSMRSLATSLSWASLAMGYYLSSVIVSIVNSITGS--SGNTPWLRGKSIN 547

Query:   424 TGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRS 456
               + DY YWL+ VLS  NF  +L+ A RYKYRS
Sbjct:   548 RYKLDYFYWLMCVLSAANFLHYLFWAMRYKYRS 580

GO:0005215 "transporter activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0009624 "response to nematode" evidence=IEP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0080168 "abscisic acid transport" evidence=IDA

GO:0090440 "abscisic acid transporter activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LYR6	PTR49_ARATH	No assigned EC number	0.8070	0.9537	0.7275	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	476
pfam00854	372	pfam00854, PTR2, POT family	7e-59
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	5e-11
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	1e-08
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	1e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.002

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  197 bits (504), Expect = 7e-59
 Identities = 101/364 (27%), Positives = 167/364 (45%), Gaps = 26/364 (7%)

Query: 28  QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 87
           Q+   Y  LY+   G  GI+P VS+FGADQFDE     +   D FF++FY S+  G+++A
Sbjct: 31  QVALFYIGLYLIALGTGGIKPNVSAFGADQFDETQDPRR---DGFFSWFYFSINAGSLIA 87

Query: 88  FTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP-GGSPLTR-VAQVLVAA 145
             +  Y+Q   G+   FG  A+ M ++ ++F +G+  Y+ + P GGSP T  +A ++ AA
Sbjct: 88  TIITPYLQQNVGYPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAA 147

Query: 146 FRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKL 205
            + R           LY    K++    S    HT        A + +            
Sbjct: 148 GKNRKLQLPKDS-HWLYWALEKYNKRSISQTKVHT------RVAVIFIPLPKFWA---LF 197

Query: 206 CTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKL-KLPVTCMPV 264
                V  ++ ++ ++PI A  I+ + + T+  TL V+Q  TM+  +  L ++P      
Sbjct: 198 DQQGSVWLLQAILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQS 257

Query: 265 FPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRN 324
           F  L++ ++L +      PL R      RG +  QR G+G+ + I++   A I E  R  
Sbjct: 258 FNPLAVLILLPILDFLVYPLLR----LKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPR 313

Query: 325 YAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY 384
           YA + G      T    L   W L +  + G+       G LEF  +  P +M S+ +  
Sbjct: 314 YAAALGLTSPGWTVP--LFILWSLPELFISGVGL----AGALEFAPDALPSSMMSLWTLL 367

Query: 385 AALA 388
           +A A
Sbjct: 368 SAAA 371

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 64.4 bits (157), Expect = 5e-11
 Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 7/121 (5%)

Query: 36  LYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL----- 90
           L      A G         A   D+  +   +   RFF+FFY ++  G++ +  +     
Sbjct: 89  LVGLALIALGTGGIKPCVSAFGGDQFEERQLSLRFRFFSFFYFAINAGSLFSTIITPILR 148

Query: 91  --VVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRK 148
             V     +  +  AFG   I M ++ ++F +G+ +Y+ + P G+ +++V + +V A +K
Sbjct: 149 GDVGCFGCQDCFPLAFGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKK 208

Query: 149 R 149
           R
Sbjct: 209 R 209

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 57.3 bits (139), Expect = 1e-08
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 32  LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 91
           LY  L +   G    +P +SS   + + +         D  F  FY+ + +G+++A  + 
Sbjct: 120 LYIGLALIIVGTGLFKPNISSLLGELYPKD----DPRRDGGFTLFYMGINIGSLIAPIIT 175

Query: 92  VYIQMEHGWGSAFGALAIAMGISNMLFFIG 121
             + + +GW   FG  A+ M I  ++F +G
Sbjct: 176 GLLAINYGWHVGFGLAAVGMIIGLVIFLLG 205

Length = 498

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 6/100 (6%)

Query: 31  YLYTVLYITGF---GAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 87
           Y   + Y  G    G+   +   SS     ++   +      D  F  FY+S+ +G+ ++
Sbjct: 101 YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYE---RGDMPRRDGGFTLFYMSINIGSFIS 157

Query: 88  FTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 127
             L   I   +G+   F   A+ M I  + FF G  + R 
Sbjct: 158 PLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRD 197

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 8/101 (7%)

Query: 24  AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 83
           A S  +L +   L   G G   + P  ++  A+ F  +         R    F     +G
Sbjct: 84  ASSLWLLLVGRFL--LGLGGGALYPAAAALIAEWFPPK------ERGRALGLFSAGFGLG 135

Query: 84  AIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 124
           A++   L   +    GW   F  LAI   +  +L      L
Sbjct: 136 ALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRL 176

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	476
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	100.0
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	99.35
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.3
TIGR00893	399	2A0114 d-galactonate transporter.	99.26
PRK03545	390	putative arabinose transporter; Provisional	99.25
PRK10054	395	putative transporter; Provisional	99.23
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.21
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.2
PRK09874	408	drug efflux system protein MdtG; Provisional	99.2
TIGR00900	365	2A0121 H+ Antiporter protein.	99.18
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.18
PRK05122	399	major facilitator superfamily transporter; Provisi	99.15
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.15
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.14
PRK10504	471	putative transporter; Provisional	99.13
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.1
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.09
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.08
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.07
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.07
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.07
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.05
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.04
PRK12382	392	putative transporter; Provisional	99.02
PRK11010	491	ampG muropeptide transporter; Validated	99.0
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.0
TIGR00901	356	2A0125 AmpG-related permease.	99.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.97
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.97
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.96
TIGR00895	398	2A0115 benzoate transport.	98.95
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.95
PRK15011	393	sugar efflux transporter B; Provisional	98.94
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.94
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.93
PRK11663	434	regulatory protein UhpC; Provisional	98.92
PRK12307	426	putative sialic acid transporter; Provisional	98.91
TIGR00898	505	2A0119 cation transport protein.	98.89
PRK09848	448	glucuronide transporter; Provisional	98.87
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.85
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.85
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.85
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.83
PRK03633	381	putative MFS family transporter protein; Provision	98.82
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.81
PRK11902	402	ampG muropeptide transporter; Reviewed	98.81
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.81
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.81
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.8
PRK09705	393	cynX putative cyanate transporter; Provisional	98.8
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.78
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.76
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.76
PRK09528	420	lacY galactoside permease; Reviewed	98.75
PRK10642	490	proline/glycine betaine transporter; Provisional	98.74
PRK10091	382	MFS transport protein AraJ; Provisional	98.74
PRK03893	496	putative sialic acid transporter; Provisional	98.74
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.72
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.72
KOG2532	466	consensus Permease of the major facilitator superf	98.7
PRK11043	401	putative transporter; Provisional	98.7
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.69
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.69
TIGR00891	405	2A0112 putative sialic acid transporter.	98.68
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.66
PLN00028	476	nitrate transmembrane transporter; Provisional	98.65
PRK03699	394	putative transporter; Provisional	98.65
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.64
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.62
PF13347	428	MFS_2: MFS/sugar transport protein	98.6
PRK09669	444	putative symporter YagG; Provisional	98.6
PRK09952	438	shikimate transporter; Provisional	98.59
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.58
PRK10429	473	melibiose:sodium symporter; Provisional	98.58
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.55
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.53
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.52
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.5
PRK15075	434	citrate-proton symporter; Provisional	98.5
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.44
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.4
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.36
PRK11462	460	putative transporter; Provisional	98.24
KOG2533	495	consensus Permease of the major facilitator superf	98.22
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.2
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.2
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.11
PRK10133	438	L-fucose transporter; Provisional	98.0
PRK03545	390	putative arabinose transporter; Provisional	97.93
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.89
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.88
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.84
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.82
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	97.81
TIGR00891	405	2A0112 putative sialic acid transporter.	97.8
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	97.77
TIGR00893	399	2A0114 d-galactonate transporter.	97.77
TIGR00900	365	2A0121 H+ Antiporter protein.	97.77
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.76
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.76
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	97.76
TIGR00805	633	oat sodium-independent organic anion transporter.	97.71
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.68
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	97.68
COG2211	467	MelB Na+/melibiose symporter and related transport	97.63
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	97.58
PRK10091	382	MFS transport protein AraJ; Provisional	97.57
PRK10473	392	multidrug efflux system protein MdtL; Provisional	97.56
PRK10054	395	putative transporter; Provisional	97.55
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.54
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.52
PRK11663	434	regulatory protein UhpC; Provisional	97.52
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	97.51
PRK14995	495	methyl viologen resistance protein SmvA; Provision	97.51
PRK09874	408	drug efflux system protein MdtG; Provisional	97.46
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.44
KOG2615	451	consensus Permease of the major facilitator superf	97.44
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	97.42
TIGR00895	398	2A0115 benzoate transport.	97.42
PRK11646	400	multidrug resistance protein MdtH; Provisional	97.42
PRK03633	381	putative MFS family transporter protein; Provision	97.36
PRK03699	394	putative transporter; Provisional	97.36
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.36
PRK05122	399	major facilitator superfamily transporter; Provisi	97.34
PRK12307	426	putative sialic acid transporter; Provisional	97.34
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.34
KOG3762	618	consensus Predicted transporter [General function	97.34
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	97.33
PRK10504	471	putative transporter; Provisional	97.32
KOG3764	464	consensus Vesicular amine transporter [Intracellul	97.3
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.28
PRK09705	393	cynX putative cyanate transporter; Provisional	97.28
TIGR00805	633	oat sodium-independent organic anion transporter.	97.27
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.26
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.23
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.22
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.22
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	97.16
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.16
PRK10489	417	enterobactin exporter EntS; Provisional	97.14
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	97.14
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.13
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.1
PRK03893	496	putative sialic acid transporter; Provisional	97.07
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.07
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.06
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	97.05
KOG0569	485	consensus Permease of the major facilitator superf	97.05
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.01
PRK12382	392	putative transporter; Provisional	96.99
PRK11010	491	ampG muropeptide transporter; Validated	96.95
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	96.91
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	96.91
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	96.91
PRK10077	479	xylE D-xylose transporter XylE; Provisional	96.87
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	96.86
PRK11902	402	ampG muropeptide transporter; Reviewed	96.84
TIGR00898	505	2A0119 cation transport protein.	96.82
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	96.81
PTZ00207	591	hypothetical protein; Provisional	96.77
PRK11043	401	putative transporter; Provisional	96.74
PRK11652	394	emrD multidrug resistance protein D; Provisional	96.73
TIGR00892	455	2A0113 monocarboxylate transporter 1.	96.72
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.59
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	96.58
KOG3764	464	consensus Vesicular amine transporter [Intracellul	96.57
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	96.54
KOG3626	735	consensus Organic anion transporter [Secondary met	96.54
PRK10133	438	L-fucose transporter; Provisional	96.53
COG2270	438	Permeases of the major facilitator superfamily [Ge	96.51
TIGR00901	356	2A0125 AmpG-related permease.	96.49
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	96.45
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	96.38
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.37
TIGR00897	402	2A0118 polyol permease family. This family of prot	96.33
KOG3626	735	consensus Organic anion transporter [Secondary met	96.3
PRK10207	489	dipeptide/tripeptide permease B; Provisional	96.29
PRK11195	393	lysophospholipid transporter LplT; Provisional	96.26
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	96.25
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	96.23
TIGR00896	355	CynX cyanate transporter. This family of proteins	96.11
KOG2532	466	consensus Permease of the major facilitator superf	96.05
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	96.04
KOG2533	495	consensus Permease of the major facilitator superf	96.01
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	95.92
PLN00028	476	nitrate transmembrane transporter; Provisional	95.88
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	95.73
PRK10406	432	alpha-ketoglutarate transporter; Provisional	95.73
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	95.67
KOG0254	513	consensus Predicted transporter (major facilitator	95.62
PRK15011	393	sugar efflux transporter B; Provisional	95.56
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	95.53
PRK10642	490	proline/glycine betaine transporter; Provisional	95.42
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	95.21
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	95.21
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	95.21
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	95.14
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	94.95
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	94.82
PRK15462	493	dipeptide/tripeptide permease D; Provisional	94.73
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	94.7
PRK09952	438	shikimate transporter; Provisional	94.66
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	94.61
KOG2325	488	consensus Predicted transporter/transmembrane prot	94.36
KOG2563	480	consensus Permease of the major facilitator superf	94.2
PRK09528	420	lacY galactoside permease; Reviewed	94.15
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	93.75
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	93.75
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	93.61
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	93.49
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	93.2
KOG0254	513	consensus Predicted transporter (major facilitator	92.3
KOG2325	488	consensus Predicted transporter/transmembrane prot	92.2
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	92.12
PRK09669	444	putative symporter YagG; Provisional	91.53
PRK11462	460	putative transporter; Provisional	91.31
PRK15075	434	citrate-proton symporter; Provisional	91.25
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	91.01
PTZ00207	591	hypothetical protein; Provisional	90.92
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	90.73
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	88.78
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	88.53
PRK10429	473	melibiose:sodium symporter; Provisional	87.83
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	87.01
KOG0569	485	consensus Permease of the major facilitator superf	86.6
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	86.54
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	86.41
PRK09848	448	glucuronide transporter; Provisional	86.25
KOG2615	451	consensus Permease of the major facilitator superf	86.07
PF13347	428	MFS_2: MFS/sugar transport protein	85.48
PHA03049	68	IMV membrane protein; Provisional	84.89
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	84.71
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	84.47
KOG2816	463	consensus Predicted transporter ADD1 (major facili	84.3
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	84.02
COG2211	467	MelB Na+/melibiose symporter and related transport	83.99
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	83.81
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	83.5

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-69  Score=575.71  Aligned_cols=436  Identities=43%  Similarity=0.727  Sum_probs=388.2

Q ss_pred             CCCCCCccccccCCCCccCccchhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHH
Q 011824            6 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI   85 (476)
Q Consensus         6 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~   85 (476)
                      +.|..| .-......|..++..+...||.+|.++++|+|+.|||+.++++||||+.+++++..+.++|||||+.+|+|++
T Consensus       130 l~p~~~-~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l  208 (571)
T KOG1237|consen  130 LLPFMC-KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGAL  208 (571)
T ss_pred             cCCccc-cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHH
Confidence            345555 1122345799999999999999999999999999999999999999988888878889999999999999999


Q ss_pred             HHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhhHHHHHHHHHHHhhccccCCcccccccccC
Q 011824           86 VAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVP  165 (476)
Q Consensus        86 i~~~l~~~l~~~~g~~~~F~i~~~~~~i~~i~f~~~~~~~~~~~p~~~pl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~  165 (476)
                      ++.++..|+|++.||.++|.+++++|++++++|+.|++.|++++|.++|++.+.+|+++++++++...+.++.. + +..
T Consensus       209 ~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~-~-~~~  286 (571)
T KOG1237|consen  209 LAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVSLDPEE-L-YYD  286 (571)
T ss_pred             HHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCCCcchh-c-ccc
Confidence            99999999999999999999999999999999999999999999999999999999999999988776654332 1 111


Q ss_pred             CCCccccCCcccccCCchhhhhHhhhhhcccc---CCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHH
Q 011824          166 GKHSAIKGSGKIAHTDDFRCLDKAALELKEDV---INPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSV  242 (476)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~---~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~  242 (476)
                           ........++++++++|+|+.+...+.   ...+||++|++++|||+|.++|++|+|...++||+++.|+.|.++
T Consensus       287 -----~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v  361 (571)
T KOG1237|consen  287 -----CTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFV  361 (571)
T ss_pred             -----ccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhhee
Confidence                 111123445778999999987654321   124789999999999999999999999999999999999999999


Q ss_pred             HHhhhccccccC-eeecCCcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 011824          243 QQAYTMNTHMGK-LKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERY  321 (476)
Q Consensus       243 ~qa~~m~~~~~g-~~ip~~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~  321 (476)
                      .|+.+||+++++ +++|+++++.+..+.+++++|+++++.+|+.||.+++++++++++||++|+++..++|.+++++|.+
T Consensus       362 ~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~vE~k  441 (571)
T KOG1237|consen  362 LQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSILSMAVAGIVEAK  441 (571)
T ss_pred             hhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHHHHHHHHHHHHH
Confidence            999999999987 9999999999999999999999999999999999988778999999999999999999999999999


Q ss_pred             hhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHH
Q 011824          322 RRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNS  401 (476)
Q Consensus       322 ~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~  401 (476)
                      |++.+.++.     ..+++ +|++||+|||+++|+||+|.+++++||+|+|||++|||+.+++|+++.|+|++++..+++
T Consensus       442 rl~~~~~~~-----~~~~~-mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~  515 (571)
T KOG1237|consen  442 RLKTAVSLL-----VETNP-MSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVS  515 (571)
T ss_pred             Hhhhhhhcc-----CCCCC-eeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998775411     11456 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhccCCCCCCCCCccc-ccCcCchhHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q 011824          402 IIKSVTGNPKKGQPNWLA-QNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQK  459 (476)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~-~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~~~~~~  459 (476)
                      ++...++  +  .++|++ +|+|++|+|+|||+++.+..++.+.|++++++|++++.++
T Consensus       516 ~v~~~t~--~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~~  570 (571)
T KOG1237|consen  516 LVQFSTG--K--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDKD  570 (571)
T ss_pred             HHHHhcC--C--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeeccccC
Confidence            9987663  1  347999 9999999999999999999999999999999999987765

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=4.7e-53  Score=429.25  Aligned_cols=366  Identities=17%  Similarity=0.220  Sum_probs=288.1

Q ss_pred             chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824           27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA  106 (476)
Q Consensus        27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i  106 (476)
                      .....++++|++|++|+|++|||+++++||||+++|||    ||.+|++||+++|+|++++|++++++++++||+.+|++
T Consensus       115 ~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~  190 (498)
T COG3104         115 SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGL  190 (498)
T ss_pred             ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHH
Confidence            45778999999999999999999999999999999997    99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccceeecC--CCCChhhH------HHHHHHHHHHh--hccccCCcccccccccCCCCccccCCcc
Q 011824          107 LAIAMGISNMLFFIGTPLYRHRL--PGGSPLTR------VAQVLVAAFRK--RHAAFSSSELIGLYEVPGKHSAIKGSGK  176 (476)
Q Consensus       107 ~~~~~~i~~i~f~~~~~~~~~~~--p~~~pl~~------~~~v~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (476)
                      ++++|.+++++|++++|++...+  |+.+|++.      ...+++..++.  ...          ..             
T Consensus       191 aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------l~-------------  247 (498)
T COG3104         191 AAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLL----------LN-------------  247 (498)
T ss_pred             HHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHH----------HH-------------
Confidence            99999999999999999988763  44444422      11111111110  000          00             


Q ss_pred             cccCCchhhh-h----HhhhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhh-hccc
Q 011824          177 IAHTDDFRCL-D----KAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNT  250 (476)
Q Consensus       177 ~~~~~~~~~l-~----~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~-~m~~  250 (476)
                         .+.+++. .    ...+.+...   ...|   ...+ +|+||+++++++++..++||++|+|++|+++.|+. +.|+
T Consensus       248 ---~~~~~~~~~~~~i~~~~~~~~~---~~~~---~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~  317 (498)
T COG3104         248 ---QNTFSGVLLVISILIAIIYFAE---AFRS---PKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNR  317 (498)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHH---Hhcc---CccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence               0000000 0    001101100   0111   1223 89999999999999999999999999999999998 6788


Q ss_pred             cccCeeecCCcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Q 011824          251 HMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHG  330 (476)
Q Consensus       251 ~~~g~~ip~~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g  330 (476)
                      ++.|+++||+|+|++||++|+++.|+++++|+|+.++. ++   |+++.|+++|+++++++++..........   .+  
T Consensus       318 ~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~-~~---ps~~~KFalGl~l~g~~fl~l~~~~~~~~---~~--  388 (498)
T COG3104         318 QIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN-KQ---PSTPIKFALGLILAGLGFLILLLAGIWFG---GP--  388 (498)
T ss_pred             cccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC-CC---CCcchHHHHHHHHHHHHHHHHHHHHHhhc---CC--
Confidence            87789999999999999999999999999999988774 33   89999999999999999998876654311   10  


Q ss_pred             CcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCC
Q 011824          331 YEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNP  410 (476)
Q Consensus       331 ~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~  410 (476)
                             ... +|++|++++|+++++||+|++|+|+|+++++||++++|.+||+|+++.+.|+.+++.+...... +   
T Consensus       389 -------~~~-~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~---  456 (498)
T COG3104         389 -------SGL-VSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-T---  456 (498)
T ss_pred             -------CCC-cCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccc-c---
Confidence                   224 8999999999999999999999999999999999999999999999999999999988763110 0   


Q ss_pred             CCCCCCcccccCcCchhHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 011824          411 KKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQ  458 (476)
Q Consensus       411 ~~~~~~~~~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~~~~~  458 (476)
                         ++     ..+......+|+.++.++++..+++...+++.++.-++
T Consensus       457 ---~~-----~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r~~~~  496 (498)
T COG3104         457 ---DP-----AYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNRMMKG  496 (498)
T ss_pred             ---ch-----hhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcC
Confidence               00     11112234589999999999999999999888765443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=100.00  E-value=1.6e-45  Score=397.74  Aligned_cols=362  Identities=24%  Similarity=0.387  Sum_probs=302.4

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc-------ch
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-------GW  100 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~-------g~  100 (476)
                      +...+++||+++++|+|++|||++++++|||+++++   ++++++|+||||++|+|+++++++++++++++       ||
T Consensus        84 ~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~  160 (654)
T TIGR00926        84 HDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCY  160 (654)
T ss_pred             HHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcch
Confidence            456688999999999999999999999999987543   35899999999999999999999999998554       69


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhhHHHHHHHHHHHhhccccCCcccccccccCCCCccccCCcccccC
Q 011824          101 GSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHT  180 (476)
Q Consensus       101 ~~~F~i~~~~~~i~~i~f~~~~~~~~~~~p~~~pl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (476)
                      +++|++++++|++++++|+.++|+|++++|.++++.++.+++..+++++......                        .
T Consensus       161 ~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~------------------------~  216 (654)
T TIGR00926       161 PLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSE------------------------H  216 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCc------------------------c
Confidence            9999999999999999999999999988899999988888888887764321110                        0


Q ss_pred             CchhhhhHhhhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhhhccccccCeeecCC
Q 011824          181 DDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVT  260 (476)
Q Consensus       181 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~~m~~~~~g~~ip~~  260 (476)
                      ...+|+|++....             .++++||+|++++++++++..++||..|+|+.+++++|+.+||++++++.+|++
T Consensus       217 ~~~~~ld~a~~~~-------------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~g~~ip~~  283 (654)
T TIGR00926       217 WPLHWLDYAKDKH-------------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVGGFEIQPD  283 (654)
T ss_pred             cchhHHHHhcccc-------------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccCCEecCHH
Confidence            1136777765432             245789999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhh---------------
Q 011824          261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNY---------------  325 (476)
Q Consensus       261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~---------------  325 (476)
                      +++++|++.++++.|+++..++|.++|++.+   +++++|+++|++++++++++++++|.++.+.               
T Consensus       284 ~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~~~~~~~~~~~~~~~~~~~~~  360 (654)
T TIGR00926       284 QMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQLKVNPTLPEEPSANEIFLQVL  360 (654)
T ss_pred             HHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcceEEEEe
Confidence            9999999999999999999999998886544   7999999999999999999999999875400               


Q ss_pred             ---------------------------h-------------hh------------------c-------------C----
Q 011824          326 ---------------------------A-------------IS------------------H-------------G----  330 (476)
Q Consensus       326 ---------------------------~-------------~~------------------~-------------g----  330 (476)
                                                 .             ..                  .             +    
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (654)
T TIGR00926       361 NTDCTICDFSVLSKRVLPHDVYLHLDKKNTSGDQGLFTTKSSAKGWTLTYDLSYDGACGLTGNCPKTTDAHELEPKISYV  440 (654)
T ss_pred             cCCCCcceEEEEecCCcccccccccCccccccccccccccccccccceEEEEeccccccccCCCCccccceeecCCceEE
Confidence                                       0             00                  0             0    


Q ss_pred             C------c-----------------------------c------------------------------------------
Q 011824          331 Y------E-----------------------------F------------------------------------------  333 (476)
Q Consensus       331 ~------~-----------------------------~------------------------------------------  333 (476)
                      +      .                             +                                          
T Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  520 (654)
T TIGR00926       441 LLLSQGGYQLTANTDKPTDAKTEKGMGSVRLVNTLNGEFGMISLCTSDSDSVTPCNPRDPYDFYFRGTKYPANTCDRIDN  520 (654)
T ss_pred             EEEecCCcceeeeeecCccCCCCCCCceEEEEecCCCcceeeEEecccCcccccCCcccccccccccceeeeeecccccc
Confidence            0      0                             0                                          


Q ss_pred             ----------c--c-----------------------cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhH
Q 011824          334 ----------S--F-----------------------LTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK  378 (476)
Q Consensus       334 ----------~--~-----------------------~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~k  378 (476)
                                .  +                       ..+++ +|++||+|||+++++||++.+++++||.|++||++||
T Consensus       521 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mk  599 (654)
T TIGR00926       521 AKSSTFLSNQLDMGIYYLIVITENSKIDELQAQIVELVSVNT-VSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMK  599 (654)
T ss_pred             cccccccccccccceEEEEEEcCCCCCCcceeEEEEecCCCc-eeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHH
Confidence                      0  0                       01223 8899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 011824          379 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRY  452 (476)
Q Consensus       379 g~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y  452 (476)
                      ++.+++|.++.++|+.+...+... ...+                  +....|.++|.++++..++|.++++.|
T Consensus       600 s~~~a~~~~~~~~g~~~~~~~~~~-~~~~------------------~~~~~~~~~~~~~~~~~~~f~~~a~~Y  654 (654)
T TIGR00926       600 SVLQALWLLTVAIGNLIVVVIAEF-ENFS------------------VQAAEFFLFASLMLVVMAIFSILAYFY  654 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-hcCh------------------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999998877643 1111                  122467889999999999999999776

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=100.00  E-value=6.4e-46  Score=380.29  Aligned_cols=340  Identities=31%  Similarity=0.458  Sum_probs=240.1

Q ss_pred             CccchhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH
Q 011824           24 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSA  103 (476)
Q Consensus        24 ~~~~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~  103 (476)
                      +++.+...+++||+++++|+|++|||++++++|||+++++   ++++++|+||||++|+|+++++++++|+++++||+++
T Consensus        28 ~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~---~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~  104 (372)
T PF00854_consen   28 PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDD---SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLG  104 (372)
T ss_dssp             ------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTT---THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHH
T ss_pred             hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccch---hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhh
Confidence            3456788999999999999999999999999999998742   3499999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccceeec-CCCCChhhH-HHHHHHHHHHhhccccCCcccccccccCCCCccccCCcccccCC
Q 011824          104 FGALAIAMGISNMLFFIGTPLYRHR-LPGGSPLTR-VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTD  181 (476)
Q Consensus       104 F~i~~~~~~i~~i~f~~~~~~~~~~-~p~~~pl~~-~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (476)
                      |++++++|++++++|+.++++|++. +|+++++.+ ...++..+.+++....+..... +++.....    . .... ..
T Consensus       105 f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~-~~~~-~~  177 (372)
T PF00854_consen  105 FGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKRKLAVPKGSSW-LDWALFQY----S-ERSI-FG  177 (372)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHHCCCH-HHHHH-HHHHHHHH----C-CCCC-CC
T ss_pred             hhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHhhcccccchHH-HHHhhhhh----h-hhhh-hh
Confidence            9999999999999999999999998 788888888 4455555556555443311110 11100000    0 0000 00


Q ss_pred             chhhhhHhhhhhccccCCCCCCc-cccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhhhccccccC-eeecC
Q 011824          182 DFRCLDKAALELKEDVINPSPWK-LCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGK-LKLPV  259 (476)
Q Consensus       182 ~~~~l~~a~~~~~~~~~~~~~~~-~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~~m~~~~~g-~~ip~  259 (476)
                      .....+ +...+...   ...|. .++++++|++|.+.+.++.+...++|+..+.|.++....|..++|+.+++ +++|+
T Consensus       178 ~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~  253 (372)
T PF00854_consen  178 IIVFIR-AAVIFFPE---IFFWALFCQVQRVEELKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPP  253 (372)
T ss_dssp             CCCHHH-HHHHHCCC---HHHHTTTSSTTTHHHCCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------S
T ss_pred             hhhhcc-chhhhhhh---hhhcccCCccceeeeeeeeeeccccCeEEEEeeehhhhhhhHHHHhcccccccccccccccc
Confidence            001111 11111100   01121 25678899999999999999999999999999999999999999999998 99999


Q ss_pred             CcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 011824          260 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM  339 (476)
Q Consensus       260 ~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  339 (476)
                      ++++++|++++++++|+++++++|+.++ ++   ++++++|+++|++++++++++++.+|.+|.....++|         
T Consensus       254 ~~l~~~n~i~iii~~pi~~~~~~p~~~~-~~---~~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~---------  320 (372)
T PF00854_consen  254 AWLQSFNPIFIIIFIPILDRVVYPLLRR-GI---QPSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG---------  320 (372)
T ss_dssp             GGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHHHHH-HHHHHHHHTTTHHHH---HH----T---------
T ss_pred             chhhhHHHHHHHHHHHHHHHHHhHHhhh-cc---cchhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC---------
Confidence            9999999999999999999999999884 23   3899999999999999999999999987765443332         


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHH
Q 011824          340 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGL  391 (476)
Q Consensus       340 ~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~  391 (476)
                      . ++.+|++|.|++++++|.++++++++.+++.+|+++++.|+|+|++..++
T Consensus       321 ~-~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~~~~  371 (372)
T PF00854_consen  321 K-VSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFALSAF  371 (372)
T ss_dssp             T---THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHHH--
T ss_pred             C-CChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHHhcc
Confidence            2 66699999999999999999999999999999999999999999887654

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=2.1e-42  Score=362.34  Aligned_cols=381  Identities=13%  Similarity=0.110  Sum_probs=272.9

Q ss_pred             HHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Q 011824           30 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI  109 (476)
Q Consensus        30 ~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~~~  109 (476)
                      ..+++++.++++|+|+++||.+++++|+|+++|++    |+++|+++|+++|+|++++|++++++.+++||+.+|+++++
T Consensus       101 ~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai  176 (493)
T PRK15462        101 SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV  176 (493)
T ss_pred             hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence            44677888999999999999999999999987755    89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccceeecC-CCCChhhH--HHHHHHHHHHhhccccCCcccccccccCCCCccccCCcccccCCchhhh
Q 011824          110 AMGISNMLFFIGTPLYRHRL-PGGSPLTR--VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL  186 (476)
Q Consensus       110 ~~~i~~i~f~~~~~~~~~~~-p~~~pl~~--~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  186 (476)
                      +|++++++++.++|.+.+.. .+.+|.++  ........+.--..-.+..... ..+....    .   .+     .-..
T Consensus       177 gm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~---~~-----~~~~  243 (493)
T PRK15462        177 GMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITV-LFWKEWS----V---YA-----LIVA  243 (493)
T ss_pred             HHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH----H---HH-----HHHH
Confidence            99999999999988876531 11223211  0000000000000000000000 0000000    0   00     0000


Q ss_pred             hHhhhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhh-hccccccCeeecCCcccch
Q 011824          187 DKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLPVTCMPVF  265 (476)
Q Consensus       187 ~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~-~m~~~~~g~~ip~~~~~~i  265 (476)
                      -.....+-.... ..+      ...+|+||+..++++++..++||+.|+|++++++++++ ++|++++||++|++|+|++
T Consensus       244 ~~~~~~~~~~~~-~~~------~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qsl  316 (493)
T PRK15462        244 TIIGLGVLAKIY-RKA------ENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSI  316 (493)
T ss_pred             HHHHHHHHHHHH-Hhc------CCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhH
Confidence            000000000000 001      13478999999999999999999999999999999998 7999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHH
Q 011824          266 PGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAY  345 (476)
Q Consensus       266 n~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~  345 (476)
                      ||++|+++.|++.++|.++.+|. +   +|+.+.|+++|++++++||++..+....    ..+         ... +|++
T Consensus       317 Np~~ii~l~P~~a~lw~~l~~~~-~---~~s~~~Kfa~g~~~~g~~f~~l~~~~~~----~~~---------~~~-~s~~  378 (493)
T PRK15462        317 NAFAVMLCGVFLAWVVKESVAGN-R---TVRIWGKFALGLGLMSAGFCILTLSARW----SAM---------YGH-SSLP  378 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCC-C---CCCcHHHHHHHHHHHHHHHHHHHHHHhh----cCC---------CCC-cCHH
Confidence            99999999999999998875542 2   3899999999999999999998776542    111         124 8999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcC
Q 011824          346 WLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAG-GLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT  424 (476)
Q Consensus       346 wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~-a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~  424 (476)
                      |++..|+++|+||++++|.|++++++.||++++|++||+|++.. ++|+.+++.+.++....+.     ++.-...+ +.
T Consensus       379 wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~-~~  452 (493)
T PRK15462        379 LMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASF-----DASGAINY-SI  452 (493)
T ss_pred             HHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-----Cccccccc-hh
Confidence            99999999999999999999999999999999999999999955 8999999999887642110     00000000 01


Q ss_pred             chhHHHHHHHHHHHHHH--HHHHHHhhccccccccc
Q 011824          425 GRFDYLYWLLAVLSVIN--FCAFLYSAYRYKYRSEQ  458 (476)
Q Consensus       425 ~~~~~~f~lla~l~~~~--~~~~~~~~~~y~~~~~~  458 (476)
                      .....+|..++.++++.  .+++....+..|.|||.
T Consensus       453 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (493)
T PRK15462        453 NAYIEVFDQITWGALACVGVVLMIWLYQALKFRNRA  488 (493)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            12345677777666544  56677777778888875

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=2.5e-37  Score=327.17  Aligned_cols=371  Identities=9%  Similarity=0.127  Sum_probs=275.0

Q ss_pred             HHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Q 011824           30 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI  109 (476)
Q Consensus        30 ~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~~~  109 (476)
                      ..++++++++++|+|++|||..++++|+|+++++|    |+++|+++|+++|+|+++|+.+++++.+++||+++|+++++
T Consensus       106 ~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~----~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i  181 (489)
T PRK10207        106 DLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA  181 (489)
T ss_pred             hHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh----hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence            34678999999999999999999999999886643    68899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccceeec--CCCCChhhHHHHHHH---------HHHHhhccccCCcccccccccCCCCccccCCcccc
Q 011824          110 AMGISNMLFFIGTPLYRHR--LPGGSPLTRVAQVLV---------AAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIA  178 (476)
Q Consensus       110 ~~~i~~i~f~~~~~~~~~~--~p~~~pl~~~~~v~~---------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (476)
                      ++.++++.++.+++.+++.  +|++++... .+.+.         ..+.. ...... ..                    
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~l~~~~~~~~~~~~~~-~~~~~~-~~--------------------  238 (489)
T PRK10207        182 GLIIALLVYFACRGMVKDIGSEPDHKPMSF-SKLLLVLLGSVVMIFVCAW-LMHNVE-VA--------------------  238 (489)
T ss_pred             HHHHHHHHHHHcchhhcccCCCCCccchhh-hhHHHHHHHHHHHHHHHHH-HHhhhh-HH--------------------
Confidence            9999999999988877653  233333211 11100         00000 000000 00                    


Q ss_pred             cCCchhhhhHhhhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhh-hccccccCeee
Q 011824          179 HTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKL  257 (476)
Q Consensus       179 ~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~-~m~~~~~g~~i  257 (476)
                       .   -.+.........-    --++..+. +..++++.+..+++++..++||..|+|+.+++++|+. ++|++..|+.+
T Consensus       239 -~---~~~~~~~~i~~~~----f~~~~~~~-~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i  309 (489)
T PRK10207        239 -N---LVLIVLSIVVTII----FFREAFKL-DKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSI  309 (489)
T ss_pred             -H---HHHHHHHHHHHHH----HHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEE
Confidence             0   0000000000000    00000111 2355777788888888999999999999999999987 68888889999


Q ss_pred             cCCcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccC
Q 011824          258 PVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLT  337 (476)
Q Consensus       258 p~~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~  337 (476)
                      |++++|++|++.++++.|+.++++.++.+| ..   ++++++|+++|+++++++++++++.+...   ...         
T Consensus       310 ~~~~~~~~n~~~iii~~pl~~~l~~rl~~r-~~---~~~~~~k~~~G~~l~~~~~~~~~~~~~~~---~~~---------  373 (489)
T PRK10207        310 NPVSFQALNPFWVVVASPILAGIYTHLGSK-GK---DLSMPMKFTLGMFLCSLGFLTAAAAGMWF---ADA---------  373 (489)
T ss_pred             CHHHHHhHhHHHHHHHHHHHHHHHHHHhhC-CC---CCCcHHHHHHHHHHHHHHHHHHHHHHHhh---cCC---------
Confidence            999999999999999999999877666444 23   38999999999999999998876654311   000         


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCc
Q 011824          338 AMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNW  417 (476)
Q Consensus       338 ~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~  417 (476)
                      ... +|+||+++.|+++|+||.+++|++++++++.+|++++|.+||+|+++.++|+.+|+.+.+.+.. +.  ...|| .
T Consensus       374 ~~~-~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~-~~--~~~~~-~  448 (489)
T PRK10207        374 QGL-TSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAV-PD--NITDP-L  448 (489)
T ss_pred             CCc-cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cc--ccccc-h
Confidence            113 7899999999999999999999999999999999999999999999999999999999887642 11  00011 0


Q ss_pred             ccccCcCchhHHHHHHHHHHHHHHHHHHHHhhccccccccccCC
Q 011824          418 LAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHG  461 (476)
Q Consensus       418 ~~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~~~~~~~~  461 (476)
                         . .+..+..+|..+++.+++..++++++.+++++.-++|++
T Consensus       449 ---~-~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  488 (489)
T PRK10207        449 ---E-TLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRMINTPES  488 (489)
T ss_pred             ---h-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence               0 012346789999999999999999999999887555543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=7.1e-37  Score=323.02  Aligned_cols=361  Identities=14%  Similarity=0.130  Sum_probs=269.9

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  107 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~  107 (476)
                      +...+++++.++++|.|+++|+..++++|++++++++   +|+++|+++|+++|+|+++|+.+++++.+++||+++|.++
T Consensus       101 ~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~---~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~  177 (475)
T TIGR00924       101 YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP---RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLA  177 (475)
T ss_pred             cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc---cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence            3556788899999999999999999999999876532   2788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccceeecCCCCChhhHH-----H--HHH----HHHHHhhccccCCcccccccccCCCCccccCCcc
Q 011824          108 AIAMGISNMLFFIGTPLYRHRLPGGSPLTRV-----A--QVL----VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGK  176 (476)
Q Consensus       108 ~~~~~i~~i~f~~~~~~~~~~~p~~~pl~~~-----~--~v~----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (476)
                      ++.+++++++++..++.+++.++++++..+.     .  ..+    ....+.. ......     +.         . ..
T Consensus       178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~---------~-~~  241 (475)
T TIGR00924       178 AVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCA-WLMHHV-----VI---------A-NI  241 (475)
T ss_pred             HHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHH-HHHhcc-----HH---------H-HH
Confidence            9999999999999888886554433332110     0  000    0001100 000000     00         0 00


Q ss_pred             cccCCchhhhhHhhhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhh-hccccccCe
Q 011824          177 IAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKL  255 (476)
Q Consensus       177 ~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~-~m~~~~~g~  255 (476)
                      +     ..-...+...+..... ..|    +.++ +++++..+++++++..++||+.|+|+.+++.+|+. ++|++++++
T Consensus       242 ~-----~~~~~~~~~~~~~~~~-~~~----~~~~-~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~  310 (475)
T TIGR00924       242 L-----LMTVTLAVIIFFFRLA-FKP----RLDA-VARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGM  310 (475)
T ss_pred             H-----HHHHHHHHHHHHHHHH-Hhc----cCCH-HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccce
Confidence            0     0000001111100000 011    1122 44555677899999999999999999999988775 799999999


Q ss_pred             eecCCcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccc
Q 011824          256 KLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSF  335 (476)
Q Consensus       256 ~ip~~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~  335 (476)
                      ++|+++++++|++++++++|+++++|.++.+| .+   ++++..|+++|+++.+++++.+++....    +.+       
T Consensus       311 ~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~-~~---~~~~~~k~~~G~~l~~~~~~~~~~~~~~----~~~-------  375 (475)
T TIGR00924       311 SVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRK-GK---DPTTPLKFTLGMLFCGASFLTFAASIWF----ADA-------  375 (475)
T ss_pred             EECHHHHHhhhHHHHHHHHHHHHHHHHHHHhC-CC---CCCcHHHHHHHHHHHHHHHHHHHHHHhh----cCC-------
Confidence            99999999999999999999999887776554 23   3788999999999999999998876331    111       


Q ss_pred             cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCC
Q 011824          336 LTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQP  415 (476)
Q Consensus       336 ~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~  415 (476)
                        +.+ +|+||++++|+++|+||++++|+++++++++||+++||.++|+|.+..++|+.+++.+........        
T Consensus       376 --~~~-~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~--------  444 (475)
T TIGR00924       376 --GGL-TSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ--------  444 (475)
T ss_pred             --CCc-cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------
Confidence              224 899999999999999999999999999999999999999999999999999999999987643211        


Q ss_pred             CcccccCcCchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 011824          416 NWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY  454 (476)
Q Consensus       416 ~~~~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~  454 (476)
                      +|          ..+|..+++++++.+++++...++.++
T Consensus       445 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~k  473 (475)
T TIGR00924       445 GV----------TGVFGKIGLVTLLVGVVMALMVPWLNR  473 (475)
T ss_pred             ch----------hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            12          347888899999999999888888775

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=1.8e-36  Score=321.81  Aligned_cols=369  Identities=12%  Similarity=0.167  Sum_probs=273.2

Q ss_pred             hHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Q 011824           29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA  108 (476)
Q Consensus        29 ~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~~  108 (476)
                      ...+++++.++++|.|+++|+..++++|+|+++++|    ++++++++|+++|+|+++||.+++++.+++||+++|++++
T Consensus       112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~  187 (500)
T PRK09584        112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSV  187 (500)
T ss_pred             HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence            456778889999999999999999999999876543    6779999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccceeec--CCCCChhhHH------HHHHHHH-HHhhccccCCcccccccccCCCCccccCCccccc
Q 011824          109 IAMGISNMLFFIGTPLYRHR--LPGGSPLTRV------AQVLVAA-FRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAH  179 (476)
Q Consensus       109 ~~~~i~~i~f~~~~~~~~~~--~p~~~pl~~~------~~v~~~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (476)
                      +.++++++.++..++.++++  +|+++|....      ..+.... ........+.     ..                 
T Consensus       188 i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----------------  245 (500)
T PRK09584        188 VGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQE-----IA-----------------  245 (500)
T ss_pred             HHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcch-----HH-----------------
Confidence            99999999888887776654  2333332211      1111111 0110000000     00                 


Q ss_pred             CCchhhhhHhhhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhh-hccccccCeeec
Q 011824          180 TDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLP  258 (476)
Q Consensus       180 ~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~-~m~~~~~g~~ip  258 (476)
                      .....+...........    ..   +. .+.+|+++.+..+++++..++||+.|.|+.+.++.|+. ++|+++.|+.+|
T Consensus       246 ~~~~~~~~~~~~~~~~~----~~---~~-~~~~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~  317 (500)
T PRK09584        246 RMALGVVALGIVVIFGK----EA---FA-MKGAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVE  317 (500)
T ss_pred             HHHHHHHHHHHHHHHHH----HH---hh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEEC
Confidence            00000000000000000    00   11 12356777778888999999999999999999999987 588888899999


Q ss_pred             CCcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCC
Q 011824          259 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTA  338 (476)
Q Consensus       259 ~~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~  338 (476)
                      +++++++|++.++++.|+++++|.++.+|       +++.+|+++|+++.++++++.++.+..    .++         .
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r-------~~~~~~~~~G~~l~~l~f~~l~~~~~~----~~~---------~  377 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDR-------LPMPHKFAIGMVLCSGAFLVLPLGAKF----AND---------A  377 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcC-------CCcHHHHHHHHHHHHHHHHHHHHHHHh----cCC---------C
Confidence            99999999999999999999987666444       568899999999999999998776542    111         2


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcc
Q 011824          339 MPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWL  418 (476)
Q Consensus       339 ~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~  418 (476)
                      .. +|++|++++|+++|+||++++|++++++++++|+++||++||+|+++.++|+.+++.+.+.+.. +.  ...++   
T Consensus       378 ~~-vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~-~~--~~~~~---  450 (500)
T PRK09584        378 GI-VSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAV-PD--NVTDP---  450 (500)
T ss_pred             Cc-cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cc--ccccc---
Confidence            24 8899999999999999999999999999999999999999999999999999999999875431 10  00011   


Q ss_pred             cccCcCchhHHHHHHHHHHHHHHHHHHHHhhccccccccccC
Q 011824          419 AQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKH  460 (476)
Q Consensus       419 ~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~~~~~~~  460 (476)
                        ....+.+..+|..+++++++..+++++++++.++..++|+
T Consensus       451 --~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~~~~~~  490 (500)
T PRK09584        451 --LMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRMTQDDS  490 (500)
T ss_pred             --hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence              0011124568888999888888999999999988755554

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.35  E-value=7.4e-10  Score=114.99  Aligned_cols=85  Identities=15%  Similarity=0.121  Sum_probs=67.9

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  107 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~  107 (476)
                      +...+++...+.+++.|...|...+.+.|.+++++      +.++..+++...++|..+|+.+.+++.+..||++.|.+.
T Consensus       109 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~  182 (417)
T PRK10489        109 SLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLA  182 (417)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHH
Confidence            44556666677788888888888888888886532      677888999999999999999999998888999999988


Q ss_pred             HHHHHHHHHHH
Q 011824          108 AIAMGISNMLF  118 (476)
Q Consensus       108 ~~~~~i~~i~f  118 (476)
                      ++..+++.+..
T Consensus       183 ~~~~~~~~~~~  193 (417)
T PRK10489        183 AAGTFITLLPL  193 (417)
T ss_pred             HHHHHHHHHHH
Confidence            87766655443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.30  E-value=8.5e-10  Score=114.24  Aligned_cols=261  Identities=12%  Similarity=0.105  Sum_probs=152.6

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  107 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~  107 (476)
                      +.+.++++..+.+++.|.+.|...+.+.|.+++++      |.+++++++...++|..+|+.+.+++. +.||+..|++.
T Consensus        98 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~  170 (400)
T PRK11646         98 EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATG  170 (400)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence            45677888888899999999999999998887532      788999999999999999999999998 78999999988


Q ss_pred             HHHHHHHHHHHHhhccceeecCCCCChhhHHHHHHHHHHHhhccccCCcccccccccCCCCccccCCcccccCCchhhhh
Q 011824          108 AIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLD  187 (476)
Q Consensus       108 ~~~~~i~~i~f~~~~~~~~~~~p~~~pl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  187 (476)
                      ++..++..+......+.   .++  ++.                  .   .                 ..  .+  .+. 
T Consensus       171 ~~~~~~~~i~~~~~~~~---~~~--~~~------------------~---~-----------------~~--~~--~~~-  202 (400)
T PRK11646        171 AVLFVLAAAFNAWLLPA---YKL--STV------------------R---T-----------------PV--RE--GMT-  202 (400)
T ss_pred             HHHHHHHHHHHHHhCCc---ccc--ccc------------------c---h-----------------hh--HH--HHH-
Confidence            87766554443322111   000  000                  0   0                 00  00  000 


Q ss_pred             HhhhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhhhccccccCeeecCCcccchhh
Q 011824          188 KAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPG  267 (476)
Q Consensus       188 ~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~~m~~~~~g~~ip~~~~~~in~  267 (476)
                         .                  -.++. +...   +.+....++..+.|....+.....  +  .++...-.+++..++.
T Consensus       203 ---~------------------~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~p~~~~--~--~~~~~~~~g~l~~~~~  253 (400)
T PRK11646        203 ---R------------------VLRDK-RFVT---YVLTLTGYYMLAVQVMLMLPIMVN--D--IAGSPSAVKWMYAIEA  253 (400)
T ss_pred             ---H------------------HHcCc-hHHH---HHHHHHHHHHHHHHHHHhhhhhHH--h--hcCCchHHHHHHHHHH
Confidence               0                  00111 1111   111112233333332211111111  1  1100000112233333


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHH
Q 011824          268 LSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWL  347 (476)
Q Consensus       268 ~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wl  347 (476)
                      +..+.......    +...|+      .+..+++.+|+++.+++++..+..+                       +.++.
T Consensus       254 ~~~~~~~~~~~----~~~~~r------~~~~~~~~~~~~~~~~~~~~l~~~~-----------------------~~~~~  300 (400)
T PRK11646        254 CLSLTLLYPIA----RWSEKR------FRLEHRLMAGLLIMSLSMFPIGMVS-----------------------NLQQL  300 (400)
T ss_pred             HHHHHHHHHHH----HHHHHh------cchhHHHHHHHHHHHHHHHHHHHhh-----------------------hHHHH
Confidence            33222222222    222221      2233456777777776655443221                       12333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 011824          348 LIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS  405 (476)
Q Consensus       348 ip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~  405 (476)
                      +...++.++++.+..|.....+.+.+|++.+|..+|++.+..++|..+|+.+.+.+..
T Consensus       301 ~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~  358 (400)
T PRK11646        301 FTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFD  358 (400)
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHH
Confidence            4445778999999999999999999999999999999999999999999888877654

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.26  E-value=3e-09  Score=107.67  Aligned_cols=86  Identities=21%  Similarity=0.255  Sum_probs=73.6

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  107 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~  107 (476)
                      +...++++..+.++|.|...|...+++.|.++++      +|.+++.++..+.++|.++++.+.+++.++.+|++.|.+.
T Consensus        81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  154 (399)
T TIGR00893        81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPAS------ERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE  154 (399)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHH------HHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence            5677888889999999999999999999998753      2788999999999999999999999988899999999988


Q ss_pred             HHHHHHHHHHHH
Q 011824          108 AIAMGISNMLFF  119 (476)
Q Consensus       108 ~~~~~i~~i~f~  119 (476)
                      ++..++..+..+
T Consensus       155 ~~~~~~~~~~~~  166 (399)
T TIGR00893       155 GVLGIIWGVLWL  166 (399)
T ss_pred             HHHHHHHHHHhh
Confidence            877665554443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.25  E-value=4.2e-09  Score=108.36  Aligned_cols=85  Identities=15%  Similarity=0.187  Sum_probs=71.7

Q ss_pred             chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824           27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA  106 (476)
Q Consensus        27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i  106 (476)
                      .+...++++..+.+++.|.+-|...+++.|.+++++      |.++++++..+.++|..+++.+.+.+.+++||++.|.+
T Consensus        95 ~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~  168 (390)
T PRK03545         95 WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLA  168 (390)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHH
Confidence            356677888888999999988999999999987533      67889999999999999999999999888999999999


Q ss_pred             HHHHHHHHHHH
Q 011824          107 LAIAMGISNML  117 (476)
Q Consensus       107 ~~~~~~i~~i~  117 (476)
                      .++..++..+.
T Consensus       169 ~~~~~~l~~~~  179 (390)
T PRK03545        169 IGGGALITLLL  179 (390)
T ss_pred             HHHHHHHHHHH
Confidence            88766555443

>PRK10054 putative transporter; Provisional

Probab=99.23  E-value=1.6e-09  Score=111.90  Aligned_cols=83  Identities=14%  Similarity=0.195  Sum_probs=65.2

Q ss_pred             hHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Q 011824           29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA  108 (476)
Q Consensus        29 ~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~~  108 (476)
                      ...++++..+.+.+.+.+.|...+...|.+++++      |.++++++|...|+|..+++.+.+++.+ .||+..|.+.+
T Consensus        96 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~  168 (395)
T PRK10054         96 VTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAA  168 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHH
Confidence            3344455556666777778888888888886532      7789999999999999999999999874 79999999988


Q ss_pred             HHHHHHHHHH
Q 011824          109 IAMGISNMLF  118 (476)
Q Consensus       109 ~~~~i~~i~f  118 (476)
                      +..+++++..
T Consensus       169 ~~~~i~~i~~  178 (395)
T PRK10054        169 ICSAFPLVFI  178 (395)
T ss_pred             HHHHHHHHHH
Confidence            8777765443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.21  E-value=1.8e-08  Score=104.12  Aligned_cols=85  Identities=11%  Similarity=0.102  Sum_probs=68.7

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  107 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~  107 (476)
                      +...++++..+.+++.+...+...+.+.|.+++++      +.+...+.+...++|..++|.+.+++.++.||+..|.+.
T Consensus       100 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~  173 (406)
T PRK15402        100 SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLF  173 (406)
T ss_pred             cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence            45567777788889998888888899999987532      556777888888899999999999998889999999988


Q ss_pred             HHHHHHHHHHH
Q 011824          108 AIAMGISNMLF  118 (476)
Q Consensus       108 ~~~~~i~~i~f  118 (476)
                      ++..+++.+..
T Consensus       174 ~~~~~~~~~~~  184 (406)
T PRK15402        174 AALAALSFFGL  184 (406)
T ss_pred             HHHHHHHHHHH
Confidence            87776665543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.20  E-value=1e-08  Score=105.25  Aligned_cols=279  Identities=11%  Similarity=0.076  Sum_probs=161.3

Q ss_pred             chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824           27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA  106 (476)
Q Consensus        27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i  106 (476)
                      .+.+.++++.++.+.+.+..-|...++..+ +.+       ++...+.+.....++|..+++.+.+++.+++||+..|.+
T Consensus        92 ~~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~~~-------~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~  163 (382)
T TIGR00902        92 HNAWLLFIAIGLFALFFSAGMPIGDALANT-WQK-------QFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAI  163 (382)
T ss_pred             hhHHHHHHHHHHHHHHHccchhHHHHHHHH-HHH-------HcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence            356677777777788888777877776543 221       256678899999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHhhccceeecCCCCChhhHHHHHHHHHHHhhccccCCcccccccccCCCCccccCCcccccCCchhhh
Q 011824          107 LAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL  186 (476)
Q Consensus       107 ~~~~~~i~~i~f~~~~~~~~~~~p~~~pl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  186 (476)
                      .++..++.++.+.. ++   ..+|+++                    .. ..        +        .   ....++.
T Consensus       164 ~~~~~~~~~~~~~~-~~---~~~~~~~--------------------~~-~~--------~--------~---~~~~~~~  199 (382)
T TIGR00902       164 LTAGLAFMLIGFLI-KP---TIPPKDA--------------------IP-ED--------E--------S---QGDSAFI  199 (382)
T ss_pred             HHHHHHHHHHHHHc-CC---CCCCCcc--------------------cc-cc--------c--------c---ccchhHH
Confidence            76553333332221 11   0011100                    00 00        0        0   0000000


Q ss_pred             hHhhhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhhhccccccCeeecCCcc---c
Q 011824          187 DKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCM---P  263 (476)
Q Consensus       187 ~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~~m~~~~~g~~ip~~~~---~  263 (476)
                      +.                      .++ |+   +..+.+...+++..+.+..+....+..+  .     +.++.+.   .
T Consensus       200 ~~----------------------l~~-~~---~~~~l~~~~l~~~~~~~~~~~~~~~l~~--~-----g~s~~~~g~l~  246 (382)
T TIGR00902       200 AL----------------------LKN-PM---NLRFLAAVCLIQGAHAAYYGFSAIYWQA--A-----GISASATGLLW  246 (382)
T ss_pred             HH----------------------HcC-hH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH--C-----CCCHhHHHHHH
Confidence            00                      011 12   2222333344445555555443332221  1     2233322   2


Q ss_pred             chhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchh
Q 011824          264 VFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLS  343 (476)
Q Consensus       264 ~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s  343 (476)
                      .++.+..++..++    ..++.+|       .++.+-+.+|.++.++.++..+..                       .+
T Consensus       247 ~~~~~~~i~~~~~----~~~l~~r-------~g~~~~l~~~~~~~~~~~~~~~~~-----------------------~~  292 (382)
T TIGR00902       247 GIGVLAEIIIFAF----SNKLFQN-------CSARDLLLISAIACVGRWAIIGAI-----------------------EA  292 (382)
T ss_pred             HHHHHHHHHHHHH----hHHHHhh-------CCHHHHHHHHHHHHHHHHHHHHhH-----------------------hh
Confidence            2333333333333    3333444       344455677888877777655432                       23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH-HHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccC
Q 011824          344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAA-LAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNI  422 (476)
Q Consensus       344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~-l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l  422 (476)
                      .++++..-+++++.+.+..+..+.++.+. |++.++..+|++. ...++|..+++.+.+.+....               
T Consensus       293 ~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~---------------  356 (382)
T TIGR00902       293 FPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL---------------  356 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------
Confidence            44455556999999999999999999998 9999999999975 567788888887777654211               


Q ss_pred             cCchhHHHHHHHHHHHHHHHHH
Q 011824          423 NTGRFDYLYWLLAVLSVINFCA  444 (476)
Q Consensus       423 n~~~~~~~f~lla~l~~~~~~~  444 (476)
                        +  ...|++.+++++++.++
T Consensus       357 --g--~~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       357 --G--AGTFVFMAIIAAAAFFL  374 (382)
T ss_pred             --c--HHHHHHHHHHHHHHHHH
Confidence              0  13577778877765443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.20  E-value=5.7e-09  Score=107.47  Aligned_cols=84  Identities=11%  Similarity=0.016  Sum_probs=65.8

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  107 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~  107 (476)
                      +.+.++++..+.+++.+. -|...+...|++++++      |.....++..+.++|.++++.+.+++.+..||+..|.+.
T Consensus       106 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  178 (408)
T PRK09874        106 NIWQFLILRALLGLLGGF-VPNANALIATQVPRNK------SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFIT  178 (408)
T ss_pred             hHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            456677777777887654 4777778888876422      677888999999999999999999998889999999988


Q ss_pred             HHHHHHHHHHH
Q 011824          108 AIAMGISNMLF  118 (476)
Q Consensus       108 ~~~~~i~~i~f  118 (476)
                      ++..++..+..
T Consensus       179 ~~~~~~~~~~~  189 (408)
T PRK09874        179 ASVLFLCFLVT  189 (408)
T ss_pred             HHHHHHHHHHH
Confidence            88766655544

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.18  E-value=6.7e-09  Score=104.48  Aligned_cols=86  Identities=17%  Similarity=0.112  Sum_probs=74.4

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  107 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~  107 (476)
                      +.+.++++..+.+++.|...|...+++.|.++++      +|.+.++++..+.++|.++++.+.+++.+..||+..|.+.
T Consensus        91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~  164 (365)
T TIGR00900        91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEE------QLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD  164 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            6677888899999999999999999999999764      2788999999999999999999999998889999999988


Q ss_pred             HHHHHHHHHHHH
Q 011824          108 AIAMGISNMLFF  119 (476)
Q Consensus       108 ~~~~~i~~i~f~  119 (476)
                      ++..+++.+..+
T Consensus       165 ~~~~~~~~~~~~  176 (365)
T TIGR00900       165 AVGFAISALLIV  176 (365)
T ss_pred             HHHHHHHHHHHH
Confidence            877666554443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.18  E-value=1.7e-08  Score=104.07  Aligned_cols=85  Identities=19%  Similarity=0.302  Sum_probs=71.0

Q ss_pred             chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824           27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA  106 (476)
Q Consensus        27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i  106 (476)
                      .+...+.++..+.++|.|...|...+.+.|.+++++      |..+.++++.+.++|.++++.+...+.+..+|+..|.+
T Consensus       101 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  174 (406)
T PRK11551        101 WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYV  174 (406)
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence            356677788888999999999999999999997532      78889999999999999999999888888999999998


Q ss_pred             HHHHHHHHHHH
Q 011824          107 LAIAMGISNML  117 (476)
Q Consensus       107 ~~~~~~i~~i~  117 (476)
                      .++..++..+.
T Consensus       175 ~~~~~~~~~~~  185 (406)
T PRK11551        175 GGVGPLLLVPL  185 (406)
T ss_pred             HHHHHHHHHHH
Confidence            87765554433

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.15  E-value=5.9e-08  Score=99.94  Aligned_cols=78  Identities=12%  Similarity=0.040  Sum_probs=65.1

Q ss_pred             hHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Q 011824           29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA  108 (476)
Q Consensus        29 ~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~~  108 (476)
                      ...++++..+.++|.|...|+..+...|.+++++      |.++..++..+.++|..+++.+.+++.+..||+..|.+++
T Consensus       112 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~  185 (399)
T PRK05122        112 LLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIM  185 (399)
T ss_pred             HHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            4466777788999999999999999999987543      6678888899999999999999999988899999888766


Q ss_pred             HHHH
Q 011824          109 IAMG  112 (476)
Q Consensus       109 ~~~~  112 (476)
                      +..+
T Consensus       186 ~~~~  189 (399)
T PRK05122        186 LLAL  189 (399)
T ss_pred             HHHH
Confidence            5543

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.15  E-value=1.5e-08  Score=101.02  Aligned_cols=260  Identities=20%  Similarity=0.256  Sum_probs=172.4

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  107 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~  107 (476)
                      +...++++..+.+++.|...+...++..|.+++++      |...+++++.+.++|..+++.+.+.+.++.+|+..|.+.
T Consensus        86 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  159 (352)
T cd06174          86 SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLIL  159 (352)
T ss_pred             cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            56678888889999999999999999999998633      788999999999999999999999999989999999998


Q ss_pred             HHHHHHHHHHHHhhccceeecCCCCChhhHHHHHHHHHHHhhccccCCcccccccccCCCCccccCCcccccCCchhhhh
Q 011824          108 AIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLD  187 (476)
Q Consensus       108 ~~~~~i~~i~f~~~~~~~~~~~p~~~pl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  187 (476)
                      ++..+++.+.....+             +......                                             
T Consensus       160 ~~~~~~~~~~~~~~~-------------~~~~~~~---------------------------------------------  181 (352)
T cd06174         160 AILGLLLALLLLFLL-------------RLLLLLA---------------------------------------------  181 (352)
T ss_pred             HHHHHHHHHHHHHHH-------------HHHHHHH---------------------------------------------
Confidence            888777666554321             0000000                                             


Q ss_pred             HhhhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHH---hhhhhhHHHHhhhccccccCeeecCCcccc
Q 011824          188 KAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVIL---TEFLTLSVQQAYTMNTHMGKLKLPVTCMPV  264 (476)
Q Consensus       188 ~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~---~Q~~s~~~~qa~~m~~~~~g~~ip~~~~~~  264 (476)
                                                           +....++..+   .+....+..+..+.+.      ...+.+..
T Consensus       182 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  218 (352)
T cd06174         182 -------------------------------------LAFFLLSFGYYGLLTYLPLYLQEVLGLSA------AEAGLLLS  218 (352)
T ss_pred             -------------------------------------HHHHHHHhHHHHHHHHHHHHHHHhcCCCH------HHHHHHHH
Confidence                                                 0000000000   0000111000001110      11233445


Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchh
Q 011824          265 FPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQ-RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLS  343 (476)
Q Consensus       265 in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~-ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s  343 (476)
                      ...+..++..++..++.    +|.++       .+ -+.++.++.+++++.....                       .+
T Consensus       219 ~~~~~~~i~~~~~~~~~----~~~~~-------~~~~~~~~~~~~~i~~~~~~~~-----------------------~~  264 (352)
T cd06174         219 LFGLGGILGALLGGLLS----DRLGR-------RRLLLLIGLLLAALGLLLLALA-----------------------PS  264 (352)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHh-------hhHHHHHHHHHHHHHHHHHHHh-----------------------cc
Confidence            55566666666655543    33221       11 4667777777776655432                       12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCc
Q 011824          344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN  423 (476)
Q Consensus       344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln  423 (476)
                      .++.+...++.++++....+.....+.+..|++.|+..+|++.....+|..+++.+.+......        +|      
T Consensus       265 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~--------~~------  330 (352)
T cd06174         265 LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG--------GY------  330 (352)
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------Cc------
Confidence            4556778899999999999999999999999999999999999999999999999887654211        12      


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHH
Q 011824          424 TGRFDYLYWLLAVLSVINFCAFL  446 (476)
Q Consensus       424 ~~~~~~~f~lla~l~~~~~~~~~  446 (476)
                          ...|.+.+++.++..+++.
T Consensus       331 ----~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         331 ----GGVFLILAALALLAALLLL  349 (352)
T ss_pred             ----chHHHHHHHHHHHHHHHhe
Confidence                2356666777766665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.14  E-value=2.5e-08  Score=102.38  Aligned_cols=82  Identities=7%  Similarity=0.036  Sum_probs=63.3

Q ss_pred             chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824           27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA  106 (476)
Q Consensus        27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i  106 (476)
                      .+.+.+++...+.+++.+...|...+...|..++        +...+.+.....++|..+||.+++++.+++||+..|.+
T Consensus        92 ~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~~--------~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~  163 (382)
T PRK11128         92 HSFWLLFVAIGLFNLFFSPLVPLTDALANTWQKQ--------IGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWI  163 (382)
T ss_pred             ccHHHHHHHHHHHHHHHcccccHHHHHHHHHHhh--------ccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence            3466667777778888999999888877765211        44566777888899999999999999999999999988


Q ss_pred             HHHHHHHHHH
Q 011824          107 LAIAMGISNM  116 (476)
Q Consensus       107 ~~~~~~i~~i  116 (476)
                      .++..++.++
T Consensus       164 ~~~~~~~~~~  173 (382)
T PRK11128        164 LTAGVASMLL  173 (382)
T ss_pred             HHHHHHHHHH
Confidence            7765554433

>PRK10504 putative transporter; Provisional

Probab=99.13  E-value=6.9e-08  Score=101.81  Aligned_cols=87  Identities=15%  Similarity=0.081  Sum_probs=72.1

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  107 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~  107 (476)
                      +...++++..+.++|.|..-|...+.+.|.++++      ++..++.++....++|..+++.+.+++.++.||++.|.+.
T Consensus        97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~  170 (471)
T PRK10504         97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPRE------QYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLIN  170 (471)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHH
Confidence            4666788889999999999999999999988642      2677888999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHh
Q 011824          108 AIAMGISNMLFFI  120 (476)
Q Consensus       108 ~~~~~i~~i~f~~  120 (476)
                      .....++.+....
T Consensus       171 ~~~~~l~~~~~~~  183 (471)
T PRK10504        171 IPVGIIGAIATLM  183 (471)
T ss_pred             HHHHHHHHHHHHH
Confidence            7665555554443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.10  E-value=3e-08  Score=104.50  Aligned_cols=85  Identities=12%  Similarity=0.231  Sum_probs=71.2

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGA  106 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~-g~~~~F~i  106 (476)
                      ....+++..++.++|.|..-|.......+.+++++      |..+..+++.+.++|.++++.+++++.+.. ||+..|.+
T Consensus       130 ~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i  203 (465)
T TIGR00894       130 GIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYV  203 (465)
T ss_pred             CchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhh
Confidence            34567778888999999999999999999997533      788999999999999999999999998884 99999999


Q ss_pred             HHHHHHHHHHHH
Q 011824          107 LAIAMGISNMLF  118 (476)
Q Consensus       107 ~~~~~~i~~i~f  118 (476)
                      .++..++..+.+
T Consensus       204 ~~~~~~~~~~~~  215 (465)
T TIGR00894       204 FGIVGCAWSLLW  215 (465)
T ss_pred             hhHHHHHHHHHH
Confidence            887655544433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.09  E-value=1.7e-08  Score=105.20  Aligned_cols=85  Identities=18%  Similarity=0.271  Sum_probs=70.5

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH---HHHhhccchhHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV---VYIQMEHGWGSAF  104 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~---~~l~~~~g~~~~F  104 (476)
                      +.+.++++..+.++|.|..-+...++++|.+++++      |..+..+++.+.++|.++++.+.   ..+.+..||++.|
T Consensus       126 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f  199 (481)
T TIGR00879       126 SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPL  199 (481)
T ss_pred             chHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence            34578889999999999999999999999998643      67888999999999999999998   6666778999999


Q ss_pred             HHHHHHHHHHHHHH
Q 011824          105 GALAIAMGISNMLF  118 (476)
Q Consensus       105 ~i~~~~~~i~~i~f  118 (476)
                      .+.++..++.++..
T Consensus       200 ~~~~~~~~~~~~~~  213 (481)
T TIGR00879       200 GLQLIPAGLLFLGL  213 (481)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99776655554443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.08  E-value=3.8e-08  Score=103.77  Aligned_cols=85  Identities=18%  Similarity=0.220  Sum_probs=67.6

Q ss_pred             chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hcc
Q 011824           27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEH   98 (476)
Q Consensus        27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~--------~~~   98 (476)
                      .....++++..+.++|.|+.-|...++++|.+++++      |..+..++-.+..+|.++++.++..+.        ++.
T Consensus       118 ~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~  191 (479)
T PRK10077        118 GYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTD  191 (479)
T ss_pred             hHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccC
Confidence            345667888899999999999999999999998643      677888888899999999887765443        357


Q ss_pred             chhHHHHHHHHHHHHHHHH
Q 011824           99 GWGSAFGALAIAMGISNML  117 (476)
Q Consensus        99 g~~~~F~i~~~~~~i~~i~  117 (476)
                      ||++.|.+.++..++.++.
T Consensus       192 gWr~~f~~~~~~~~~~~~~  210 (479)
T PRK10077        192 GWRYMFASEAIPALLFLML  210 (479)
T ss_pred             ChHHHHHHHHHHHHHHHHH
Confidence            9999999887766655443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.07  E-value=1.6e-08  Score=101.30  Aligned_cols=85  Identities=25%  Similarity=0.370  Sum_probs=76.2

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  107 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~  107 (476)
                      +.+.++++..+.++|.|...|...+++.|.+++++      |...+++++.+.++|.++++.+.+++.++.||+..|.+.
T Consensus        84 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~  157 (352)
T PF07690_consen   84 NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLIS  157 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHH
T ss_pred             hHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhhhhhcccchhhhhhhccccccccccc
Confidence            44478899999999999999999999999999844      788999999999999999999999999889999999999


Q ss_pred             HHHHHHHHHHH
Q 011824          108 AIAMGISNMLF  118 (476)
Q Consensus       108 ~~~~~i~~i~f  118 (476)
                      ++..++..++.
T Consensus       158 ~~~~~~~~il~  168 (352)
T PF07690_consen  158 AILSLIAAILF  168 (352)
T ss_dssp             HHHHHHHHHHH
T ss_pred             cchhhhhhhhH
Confidence            99888887643

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.07  E-value=1.4e-07  Score=100.93  Aligned_cols=266  Identities=17%  Similarity=0.140  Sum_probs=157.9

Q ss_pred             chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824           27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA  106 (476)
Q Consensus        27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i  106 (476)
                      .+.+.+++..+++++|..++.|.-++++.+..++++      ..++.++.-...|+.-++||.++|.+-...|-...|++
T Consensus       101 ~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~i  174 (524)
T PF05977_consen  101 LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLI  174 (524)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            467778888889999999999999999999998644      67788899999999999999999998878899999999


Q ss_pred             HHHHHHHHHHHHHhhccceeecCCCCChhhHHHHHHHHHHHhhccccCCcccccccccCCCCccccCCcccccCCchhhh
Q 011824          107 LAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL  186 (476)
Q Consensus       107 ~~~~~~i~~i~f~~~~~~~~~~~p~~~pl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  186 (476)
                      .+++.+++++.+..-++..   +++..|-++..+-++                                           
T Consensus       175 nalsfl~~i~~l~~~~~~~---~~~~~~~e~~~~~l~-------------------------------------------  208 (524)
T PF05977_consen  175 NALSFLISILALLRWKPPP---PPSSLPRERFFSALR-------------------------------------------  208 (524)
T ss_pred             HHHHHHHHHHHHHHccccc---cccccchhhhhhhHH-------------------------------------------
Confidence            9998887765554332211   111111011000000                                           


Q ss_pred             hHhhhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhh-hccccccCeeecCCcccch
Q 011824          187 DKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLPVTCMPVF  265 (476)
Q Consensus       187 ~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~-~m~~~~~g~~ip~~~~~~i  265 (476)
                        +..+|                 +..-+.+...+.   ...++.....-....+...+. .++.       .+..+..+
T Consensus       209 --~G~ry-----------------v~~~~~l~~~l~---~~~~~~l~~~a~~aLlPl~a~~~l~~-------~a~~yGll  259 (524)
T PF05977_consen  209 --EGLRY-----------------VRSSPPLRSVLL---RSFLFNLFASAVWALLPLFARDVLGG-------GASGYGLL  259 (524)
T ss_pred             --HHHHH-----------------HhcchHHHHHHH---HHHHHHHhhhHHHHhhhHHHHHHhCC-------cHHHHHHH
Confidence              00001                 001111111111   111121111111111222222 1221       12222222


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHH
Q 011824          266 PGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAY  345 (476)
Q Consensus       266 n~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~  345 (476)
                      ..  ..-..-+...++.+..+++      .+..+-+..+.++.+++++..++.                       -+.+
T Consensus       260 ~a--~~gvGai~Gal~~~~l~~~------~~~~~lv~~~~~~~a~~~~~lal~-----------------------~~~~  308 (524)
T PF05977_consen  260 LA--AFGVGAILGALLLPRLRRR------LSSRRLVLLASLLFALALLLLALS-----------------------PSFW  308 (524)
T ss_pred             HH--HHHHHHHHHHHHHHHhhcc------cCcchhhHHHHHHHHHHHHHHhcc-----------------------hHHH
Confidence            21  1122233344444444442      233344566777666666555432                       2345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          346 WLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       346 wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      ..++..++.|++-..........+-+.+|++++|..++++......+..+|..+.+.+.
T Consensus       309 ~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la  367 (524)
T PF05977_consen  309 LALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLA  367 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55677889999999999999999999999999999999988776666666666655443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.07  E-value=1.5e-08  Score=106.80  Aligned_cols=85  Identities=18%  Similarity=0.090  Sum_probs=63.4

Q ss_pred             hHHHHHHH-HHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824           29 MLYLYTVL-YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  107 (476)
Q Consensus        29 ~~~~~~gL-~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~  107 (476)
                      ...++++. .+.++|.|..-+...+...+.+++       +|..+..+.+.+.++|..+++.+.+++.+.+||++.|.+.
T Consensus       107 ~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~  179 (455)
T TIGR00892       107 VIELYLTAGFITGLGLAFNFQPSLTMLGKYFYR-------RRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLIL  179 (455)
T ss_pred             HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHh-------hHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence            34444433 456788887555555677777731       1678889999999999999999999998899999999999


Q ss_pred             HHHHHHHHHHHHh
Q 011824          108 AIAMGISNMLFFI  120 (476)
Q Consensus       108 ~~~~~i~~i~f~~  120 (476)
                      ++..++..+..++
T Consensus       180 ~~~~~~~~v~~~~  192 (455)
T TIGR00892       180 GGLLLHCCVCGAL  192 (455)
T ss_pred             HHHHHHHHHHHHH
Confidence            8877766554443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.05  E-value=1e-07  Score=97.08  Aligned_cols=87  Identities=21%  Similarity=0.326  Sum_probs=73.3

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  107 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~  107 (476)
                      +...++++..+.++|.+...+...+++.|.+++++      |...+.+++...++|..+++.+.+++.++.||+..|.+.
T Consensus        92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~  165 (385)
T TIGR00710        92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFL  165 (385)
T ss_pred             cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            45667788888999999999999999999987532      778899999999999999999999999889999999988


Q ss_pred             HHHHHHHHHHHHh
Q 011824          108 AIAMGISNMLFFI  120 (476)
Q Consensus       108 ~~~~~i~~i~f~~  120 (476)
                      ++..++..+..+.
T Consensus       166 ~~~~~~~~~~~~~  178 (385)
T TIGR00710       166 SLAGILLSALIFF  178 (385)
T ss_pred             HHHHHHHHHHHHH
Confidence            8776666555443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.04  E-value=3.8e-08  Score=115.22  Aligned_cols=288  Identities=11%  Similarity=-0.002  Sum_probs=158.3

Q ss_pred             chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824           27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA  106 (476)
Q Consensus        27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i  106 (476)
                      .+.+.++++.++.++|.+++.|...+++.|.+++++      +..+.+++.++.++|.++|+.+++++.+..||+..|.+
T Consensus       106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~  179 (1140)
T PRK06814        106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVAL  179 (1140)
T ss_pred             hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            467788999999999999999999999999998743      77899999999999999999999999988999999844


Q ss_pred             HHHHHHHHHHHHHhhccceeecCCCCChhhHHHHHHHHHHHhhccccCCcccccccccCCCCccccCCcccccCCchhhh
Q 011824          107 LAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL  186 (476)
Q Consensus       107 ~~~~~~i~~i~f~~~~~~~~~~~p~~~pl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  186 (476)
                      .++..++++++.+.    ++..+++.....                     .      +              .   +..
T Consensus       180 ~~~~~~~~~~~~~~----~~~~~~~~~~~~---------------------~------~--------------~---~~~  211 (1140)
T PRK06814        180 LMGIAVLGWLASLF----IPKTGNAAPDLK---------------------I------D--------------R---NII  211 (1140)
T ss_pred             HHHHHHHHHHHHhh----CCCCCCCCCCCe---------------------e------c--------------c---chH
Confidence            44443333332221    111111100000                     0      0              0   000


Q ss_pred             hHhhhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhhh-ccccccCeeecCCcccch
Q 011824          187 DKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHMGKLKLPVTCMPVF  265 (476)
Q Consensus       187 ~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~~-m~~~~~g~~ip~~~~~~i  265 (476)
                      .....          .        ....++--.+..+.+...+++.++....+.+..+... ...+    ..-.+++.+.
T Consensus       212 ~~~~~----------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~----~~~~g~~~~~  269 (1140)
T PRK06814        212 RSTIT----------L--------LKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGD----ENVATLFLAV  269 (1140)
T ss_pred             HHHHH----------H--------HHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCc----hHHHHHHHHH
Confidence            00000          0        0000000011112222222333322222222222211 1111    0011234455


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHH
Q 011824          266 PGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAY  345 (476)
Q Consensus       266 n~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~  345 (476)
                      ..+..++...+..++    .++.       ...+.+.+|.++.+++.+..++...... ........-. ..... .+.+
T Consensus       270 ~~~g~~ig~~~~g~l----~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~-~~~~~-~~~~  335 (1140)
T PRK06814        270 FSVGVAVGSFLASKL----SEGR-------ITLLYVPIGALLMGLFGLDLAFASSSVP-AEPAQLKSIL-VFLSK-RHGW  335 (1140)
T ss_pred             HHHHHHHHHHHHHHH----hCCc-------eeeeeehHHHHHHHHHHHHHHhcccccc-cccccccchh-hhhcc-cccH
Confidence            555555555555443    2221       1122344555555544443332100000 0000000000 00001 2345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          346 WLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       346 wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      ++++..++.|++..+..+.....+.+.+|++.+|.++|++.+...+|..+++.+.+.+.
T Consensus       336 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~  394 (1140)
T PRK06814        336 RILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ  394 (1140)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            66677889999999999999999999999999999999999999999998888877654

>PRK12382 putative transporter; Provisional

Probab=99.02  E-value=2e-07  Score=95.86  Aligned_cols=77  Identities=10%  Similarity=0.162  Sum_probs=64.1

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  107 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~  107 (476)
                      +...++++..+.++|.+...|...+.+.|.+++++      |.++++++..+.++|..+++.+.+++.+.+||+..+.+.
T Consensus       111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~  184 (392)
T PRK12382        111 KFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTT  184 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence            56677888889999999988888888888887533      677888999999999999999999998889998877665


Q ss_pred             HHH
Q 011824          108 AIA  110 (476)
Q Consensus       108 ~~~  110 (476)
                      .+.
T Consensus       185 ~~~  187 (392)
T PRK12382        185 MVL  187 (392)
T ss_pred             HHH
Confidence            443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.00  E-value=4e-07  Score=97.01  Aligned_cols=85  Identities=13%  Similarity=0.147  Sum_probs=70.0

Q ss_pred             chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-ccchhHHHH
Q 011824           27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFG  105 (476)
Q Consensus        27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~-~~g~~~~F~  105 (476)
                      .+...+++...+.+++.+...+...++..|.+++++      |.++..+.-.+.++|.++++.+..++.+ ..||+..|.
T Consensus       105 ~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~  178 (491)
T PRK11010        105 TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYW  178 (491)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence            456677777778888999999999999999988533      6777888889999999999999999987 469999999


Q ss_pred             HHHHHHHHHHHH
Q 011824          106 ALAIAMGISNML  117 (476)
Q Consensus       106 i~~~~~~i~~i~  117 (476)
                      +.++.+++..+.
T Consensus       179 i~a~l~ll~~l~  190 (491)
T PRK11010        179 LMAALLIPCIIA  190 (491)
T ss_pred             HHHHHHHHHHHH
Confidence            988776665443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.00  E-value=3e-07  Score=93.28  Aligned_cols=88  Identities=13%  Similarity=0.221  Sum_probs=61.3

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  107 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~  107 (476)
                      +...+++...+.+.+.+..-|...++..+..+++. |   .+.....+.+.+.++|..+++.+.+++.+..||+..|.+.
T Consensus        86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~  161 (375)
T TIGR00899        86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG-R---EAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTA  161 (375)
T ss_pred             hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc-h---hhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHH
Confidence            34445555555666666677777777777654322 1   1222356778889999999999999998889999999998


Q ss_pred             HHHHHHHHHHHH
Q 011824          108 AIAMGISNMLFF  119 (476)
Q Consensus       108 ~~~~~i~~i~f~  119 (476)
                      ++..++..+..+
T Consensus       162 ~~~~~~~~~~~~  173 (375)
T TIGR00899       162 ALAFVLCGVLVW  173 (375)
T ss_pred             HHHHHHHHHHHH
Confidence            887666655443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.00  E-value=9.3e-08  Score=96.86  Aligned_cols=86  Identities=12%  Similarity=0.187  Sum_probs=68.2

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc--------
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--------   99 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g--------   99 (476)
                      +...++....+.+++.+...+...+++.|.+++++      |..+..+...+.++|.++++.+.+++..+.|        
T Consensus        82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~  155 (356)
T TIGR00901        82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITL  155 (356)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence            44445555556678888889999999999996532      6788899999999999999999998887778        


Q ss_pred             hhHHHHHHHHHHHHHHHHHH
Q 011824          100 WGSAFGALAIAMGISNMLFF  119 (476)
Q Consensus       100 ~~~~F~i~~~~~~i~~i~f~  119 (476)
                      |+..|.+.++..++++++.+
T Consensus       156 wr~~f~i~ai~~l~~~~~~~  175 (356)
T TIGR00901       156 WGYIFFWTALLILPGLLVTL  175 (356)
T ss_pred             cHHHHHHHHHHHHHHHHHHH
Confidence            99999999887776554433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.97  E-value=4e-07  Score=94.11  Aligned_cols=83  Identities=16%  Similarity=0.231  Sum_probs=71.7

Q ss_pred             chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824           27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA  106 (476)
Q Consensus        27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i  106 (476)
                      .+.+.+++...+.+++.|...|...++..|.+++++      |..+..+++.+.|+|.++++.+.+++.+..||+..|.+
T Consensus       106 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~  179 (394)
T PRK10213        106 NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNA  179 (394)
T ss_pred             ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence            467788888899999999999999999999987532      67889999999999999999999999998999999998


Q ss_pred             HHHHHHHHH
Q 011824          107 LAIAMGISN  115 (476)
Q Consensus       107 ~~~~~~i~~  115 (476)
                      .++..++.+
T Consensus       180 ~~~l~~~~~  188 (394)
T PRK10213        180 AAVMGVLCI  188 (394)
T ss_pred             HHHHHHHHH
Confidence            876555443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.97  E-value=2e-07  Score=96.97  Aligned_cols=85  Identities=15%  Similarity=0.161  Sum_probs=58.5

Q ss_pred             hHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-------hccchh
Q 011824           29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-------MEHGWG  101 (476)
Q Consensus        29 ~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~-------~~~g~~  101 (476)
                      ...+++...+..++.+.+.....++..+..++.  +   +|.+...+.....++|++++..+.+.+.       +..||+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~--~---~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~  173 (437)
T TIGR00792        99 LVYAYITYILLGLFYSFVNIPYWSLVPAITLDP--R---ERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWF  173 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhcccHhhCcccccCCH--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHH
Confidence            344444455567777788888888888876542  2   2677888888899999888776655443       246899


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 011824          102 SAFGALAIAMGISNMLF  118 (476)
Q Consensus       102 ~~F~i~~~~~~i~~i~f  118 (476)
                      ..|.+.++..++..++.
T Consensus       174 ~~~~i~~~l~~~~~~~~  190 (437)
T TIGR00792       174 MFALVLALIGVVSLIIC  190 (437)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            98888777666555443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.96  E-value=1.2e-07  Score=100.04  Aligned_cols=87  Identities=20%  Similarity=0.149  Sum_probs=73.3

Q ss_pred             chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824           27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA  106 (476)
Q Consensus        27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i  106 (476)
                      .+...++++..+.++|.|...|...+++.|.++++      +|..++.+++.+.++|..+++.+.+++.+++||++.|.+
T Consensus        88 ~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~  161 (485)
T TIGR00711        88 PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPE------KRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLI  161 (485)
T ss_pred             CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhh
Confidence            35677888888999999999999999999999753      277889999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHH
Q 011824          107 LAIAMGISNMLFF  119 (476)
Q Consensus       107 ~~~~~~i~~i~f~  119 (476)
                      .+...++.++...
T Consensus       162 ~~~~~~~~~~~~~  174 (485)
T TIGR00711       162 NVPIGIIVVVVAF  174 (485)
T ss_pred             hhHHHHHHHHHHH
Confidence            7766555544433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00895 2A0115 benzoate transport

Probab=98.95  E-value=3e-07  Score=93.65  Aligned_cols=84  Identities=20%  Similarity=0.316  Sum_probs=70.7

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  107 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~  107 (476)
                      +...++++..+.++|.|...|...+++.|.+++++      |..+++++..+.++|..+++.+.+++.+..||+..|.+.
T Consensus       104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~  177 (398)
T TIGR00895       104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVG  177 (398)
T ss_pred             chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhh
Confidence            45677888889999999999999999999987532      778899999999999999999999999889999999988


Q ss_pred             HHHHHHHHHH
Q 011824          108 AIAMGISNML  117 (476)
Q Consensus       108 ~~~~~i~~i~  117 (476)
                      ++..++..++
T Consensus       178 ~~~~~~~~~~  187 (398)
T TIGR00895       178 GIAPLLLLLL  187 (398)
T ss_pred             hhHHHHHHHH
Confidence            6554444443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.95  E-value=2.9e-08  Score=108.38  Aligned_cols=253  Identities=11%  Similarity=-0.031  Sum_probs=186.5

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhH-----
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGS-----  102 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~-----  102 (476)
                      +.....++++.++++.++.+++.+++.++|.+..++   +++++.+++|||..+.+.+.+.+..........+..     
T Consensus        81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~---~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~  157 (654)
T TIGR00926        81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE---RQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQ  157 (654)
T ss_pred             cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Confidence            355667788889999999999999999999987652   666789999999999999865444444442223432     


Q ss_pred             --HHHHHHHHHHHHHHHHHhhccceeecCCCCChhhHHHHHHHHHHHhhccccCCcccccccccCCCCccccCCcccccC
Q 011824          103 --AFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHT  180 (476)
Q Consensus       103 --~F~i~~~~~~i~~i~f~~~~~~~~~~~p~~~pl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (476)
                        -++..++.+++.++.++.+...++..++.+.+...+.+++....+..+.                        +. ..
T Consensus       158 ~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~------------------------~~-~~  212 (654)
T TIGR00926       158 DCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRK------------------------RF-ST  212 (654)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHH------------------------hh-cc
Confidence              3347888888999999998777776666555444445554333221110                        00 00


Q ss_pred             CchhhhhHhhhhhccccCCCCCCccc--cccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhhhccccccCeeec
Q 011824          181 DDFRCLDKAALELKEDVINPSPWKLC--TVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP  258 (476)
Q Consensus       181 ~~~~~l~~a~~~~~~~~~~~~~~~~~--~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~~m~~~~~g~~ip  258 (476)
                      ...++              ...|..+  ...++++++...+++.++...+.+|+.+.|.....+.|+.++++..+.+...
T Consensus       213 ~~~~~--------------~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~g~  278 (654)
T TIGR00926       213 RSEHW--------------PLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVGGF  278 (654)
T ss_pred             CCccc--------------chhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccCCE
Confidence            00000              0122112  2333467899999999999999999999999999999999999887666667


Q ss_pred             CCcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011824          259 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNY  325 (476)
Q Consensus       259 ~~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~  325 (476)
                      +...+.++++-.++++|+...+-+|+..+..++   -.+++++.-+.+.++++.+..++.+..+...
T Consensus       279 ~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~---~~~ls~l~k~~iG~~la~la~~va~~ve~~~  342 (654)
T TIGR00926       279 EIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKC---GTRFTSLRKMAVGGLLAALSFFVAALVQLKV  342 (654)
T ss_pred             ecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778889999999999999999999999998654   5788999999999999999999998865543

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.94  E-value=6.4e-07  Score=92.37  Aligned_cols=72  Identities=13%  Similarity=0.241  Sum_probs=50.5

Q ss_pred             cCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH
Q 011824           44 AGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  119 (476)
Q Consensus        44 G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~~~~~~i~~i~f~  119 (476)
                      +...|...++..|..++++ |   ....+.++...+.++|.++++.+.+++.++.||+..|++.++..++..+..+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~  191 (393)
T PRK15011        120 STANPQMFALAREHADKTG-R---EAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVW  191 (393)
T ss_pred             HhhHHHHHHHHHHHhhhcc-c---hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence            3456666676666554322 1   0122335888899999999999999999889999999988876555544433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.94  E-value=2e-07  Score=99.30  Aligned_cols=88  Identities=17%  Similarity=0.061  Sum_probs=73.1

Q ss_pred             chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824           27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA  106 (476)
Q Consensus        27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i  106 (476)
                      .+...++++..+.++|.|++.|...+.+.+.+.+++     +|.+++.++..+.++|..+||.+.+++.++.||++.|++
T Consensus        92 ~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i  166 (495)
T PRK14995         92 PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLI  166 (495)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHH
Confidence            467788889999999999999988888888875422     378899999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHH
Q 011824          107 LAIAMGISNMLFF  119 (476)
Q Consensus       107 ~~~~~~i~~i~f~  119 (476)
                      .....++.+++.+
T Consensus       167 ~~~~~~~~~~l~~  179 (495)
T PRK14995        167 NVPIVLVVMGLTA  179 (495)
T ss_pred             HHHHHHHHHHHHH
Confidence            7766555544433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.93  E-value=8.3e-07  Score=90.41  Aligned_cols=85  Identities=20%  Similarity=0.356  Sum_probs=71.2

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  107 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~  107 (476)
                      +...++++..+.+++.+...+...++..|.+++++      |.+.+++++...++|..+++.+.+++.+..||+..|.+.
T Consensus        78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  151 (377)
T PRK11102         78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVL  151 (377)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence            45567777888899999999999999999987533      778899999999999999999999999889999999988


Q ss_pred             HHHHHHHHHHH
Q 011824          108 AIAMGISNMLF  118 (476)
Q Consensus       108 ~~~~~i~~i~f  118 (476)
                      ++..++..+..
T Consensus       152 ~~~~~~~~~~~  162 (377)
T PRK11102        152 ALAAILAAALV  162 (377)
T ss_pred             HHHHHHHHHHH
Confidence            77766655444

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.92  E-value=6.1e-07  Score=93.90  Aligned_cols=81  Identities=11%  Similarity=0.146  Sum_probs=66.8

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  107 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~  107 (476)
                      +...+++...+.+++.|..-|...+.+.+++++++      |..+..+++.+.++|..+++.+.+++.+++||++.|.+.
T Consensus       110 ~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~  183 (434)
T PRK11663        110 SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIA  183 (434)
T ss_pred             HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            44555666667788888888999999999997532      788999999999999999999999999899999999988


Q ss_pred             HHHHHHH
Q 011824          108 AIAMGIS  114 (476)
Q Consensus       108 ~~~~~i~  114 (476)
                      ++..++.
T Consensus       184 ~i~~~~~  190 (434)
T PRK11663        184 GIIAIVV  190 (434)
T ss_pred             HHHHHHH
Confidence            7755443

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.91  E-value=5.9e-07  Score=93.27  Aligned_cols=79  Identities=20%  Similarity=0.374  Sum_probs=67.5

Q ss_pred             chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824           27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA  106 (476)
Q Consensus        27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i  106 (476)
                      .+...++++..+.++|.|..-+...+++.|.+++++      |..+.+++..+.++|.++++.+.+++.+.+||+..|++
T Consensus       104 ~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i  177 (426)
T PRK12307        104 SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV  177 (426)
T ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH
Confidence            356778888889999999999999999999987532      67788899999999999999999999888999999998


Q ss_pred             HHHHH
Q 011824          107 LAIAM  111 (476)
Q Consensus       107 ~~~~~  111 (476)
                      +++..
T Consensus       178 ~~~~~  182 (426)
T PRK12307        178 GLLPV  182 (426)
T ss_pred             HHHHH
Confidence            65443

>TIGR00898 2A0119 cation transport protein

Probab=98.89  E-value=1.5e-06  Score=92.46  Aligned_cols=82  Identities=11%  Similarity=0.152  Sum_probs=66.2

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  107 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~  107 (476)
                      +...++++.++.++|.|+..+...+++.|.+++++      |..+..++..+..+|.++++.++..+.+   |+..|.+.
T Consensus       179 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~  249 (505)
T TIGR00898       179 NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAV  249 (505)
T ss_pred             cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHH
Confidence            56678888889999999999999999999998643      5667777888889999999988776653   99999988


Q ss_pred             HHHHHHHHHHH
Q 011824          108 AIAMGISNMLF  118 (476)
Q Consensus       108 ~~~~~i~~i~f  118 (476)
                      ++..++..+..
T Consensus       250 ~i~~~~~~~~~  260 (505)
T TIGR00898       250 SLPTFLFFLLS  260 (505)
T ss_pred             HHHHHHHHHHH
Confidence            87766555444

>PRK09848 glucuronide transporter; Provisional

Probab=98.87  E-value=7.9e-07  Score=93.35  Aligned_cols=88  Identities=8%  Similarity=0.032  Sum_probs=65.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 011824          297 QLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA  376 (476)
Q Consensus       297 ~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~  376 (476)
                      ..+-+.+|+++.+++.+...+..                    . .+.++.+...++.++|+.+..+...+...+.+|++
T Consensus       293 ~~~~~~~g~~~~~i~~~~~~~~~--------------------~-~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~  351 (448)
T PRK09848        293 KKNTFLIGALLGTCGYLLFFWVS--------------------V-WSLPVALVALAIASIGQGVTMTVMWALEADTVEYG  351 (448)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcC--------------------c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            34456778777777665443210                    1 34455556678899999999999999999988865


Q ss_pred             -------hHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 011824          377 -------MKSIGSAYAALAGGLGCFAASILNSIIKS  405 (476)
Q Consensus       377 -------~kg~~~gl~~l~~a~g~~l~~~l~~~~~~  405 (476)
                             .+|.++|++.+..-+|..+|+.+.+.+-.
T Consensus       352 ~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~  387 (448)
T PRK09848        352 EYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG  387 (448)
T ss_pred             HHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   56999999999999999998888766543

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.85  E-value=1.5e-06  Score=91.65  Aligned_cols=302  Identities=12%  Similarity=0.039  Sum_probs=173.8

Q ss_pred             HHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--hhc----------
Q 011824           30 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI--QME----------   97 (476)
Q Consensus        30 ~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l--~~~----------   97 (476)
                      ..+.+++.+.-++.....+...++++|..++++.|    ++.++.|+.+..|+|+++|+.+.++.  .+.          
T Consensus       115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~  190 (477)
T TIGR01301       115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACG  190 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccc
Confidence            45566666777788888888999999999975522    46799999999999999999988765  221          


Q ss_pred             ---cchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhhHHHHHHHHHHHhhccccCCcccccccccCCCCccccCC
Q 011824           98 ---HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGS  174 (476)
Q Consensus        98 ---~g~~~~F~i~~~~~~i~~i~f~~~~~~~~~~~p~~~pl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (476)
                         .+++..|.++++.++++.++-.+.-|..+..+++..                    ++  .  .++..+++      
T Consensus       191 ~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~--------------------~~--~--~~~~~~~~------  240 (477)
T TIGR01301       191 VSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDF--------------------IN--S--EAAPPSKH------  240 (477)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccc--------------------hh--h--hccccccc------
Confidence               167889999999888887776654333221000000                    00  0  00000000      


Q ss_pred             cccccCCchhhhhHhhhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhh-hcccccc
Q 011824          175 GKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMG  253 (476)
Q Consensus       175 ~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~-~m~~~~~  253 (476)
                       ..  .   ..+   ++.+.              .-++--|.+.+++.+-++..+-|..+-+..|.++-+.. +-+.+-.
T Consensus       241 -~~--~---~~~---~~i~~--------------~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~  297 (477)
T TIGR01301       241 -GE--E---AFF---GELFG--------------AFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQG  297 (477)
T ss_pred             -ch--h---hhH---HHHHH--------------HHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcch
Confidence             00  0   000   00000              00111234455666666666667777677777754432 1111000


Q ss_pred             -Ceeec---CCcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHH-HHHHHHHHHHHHHHHHHHHHhhh--h-
Q 011824          254 -KLKLP---VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRV-GIGLAVSILSVIWAGIFERYRRN--Y-  325 (476)
Q Consensus       254 -g~~ip---~~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki-~iG~~l~~ls~~~~~~~~~~~~~--~-  325 (476)
                       .++--   ..+-..+|.+...    ++..++.++.|+.+       ..++. .++.++.++++....++.....+  . 
T Consensus       298 ~~y~~gvr~G~~~l~~~s~~~~----i~s~~l~~l~~~~g-------~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~  366 (477)
T TIGR01301       298 AKYDDGVRAGAFGLMLNSVVLG----ITSIGMEKLCRGWG-------AGKRLWGIVNIILAICLAATVLVTYVAKNSRYY  366 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhc-------cchhHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence             00000   1122233333333    33334444455532       12234 68888888888887766531100  0 


Q ss_pred             hhhcCCcccccCCCcchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch--hhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 011824          326 AISHGYEFSFLTAMPDLS-AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD--AMKSIGSAYAALAGGLGCFAASILNSI  402 (476)
Q Consensus       326 ~~~~g~~~~~~~~~~~~s-~~wlip~~~l~~igEll~~p~~lef~~~~aP~--~~kg~~~gl~~l~~a~g~~l~~~l~~~  402 (476)
                      ...++..      .++.. .++.+..+.+.|++-......=++.+.+..|+  +-.|.+||+.+++..+...+..+..+.
T Consensus       367 ~~~~~~~------~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~  440 (477)
T TIGR01301       367 DGDGESL------PPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGP  440 (477)
T ss_pred             ccccccc------CcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence            0000110      01022 35566778999999999999999999999995  455999999999999999998877766


Q ss_pred             hhh
Q 011824          403 IKS  405 (476)
Q Consensus       403 ~~~  405 (476)
                      +..
T Consensus       441 ~~~  443 (477)
T TIGR01301       441 WDQ  443 (477)
T ss_pred             HHH
Confidence            543

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.85  E-value=4e-07  Score=91.82  Aligned_cols=85  Identities=13%  Similarity=0.056  Sum_probs=65.4

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  107 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~  107 (476)
                      +...++++..+.++|.|...+...+...+.+++ +      |..+..++..+.++|.++++.+.+.+.+..||+..|.+.
T Consensus        90 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~  162 (377)
T TIGR00890        90 SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-K------RGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYM  162 (377)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-c------cHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHH
Confidence            566777788888999988777777777777753 1      567888999999999988766667776778999999998


Q ss_pred             HHHHHHHHHHHH
Q 011824          108 AIAMGISNMLFF  119 (476)
Q Consensus       108 ~~~~~i~~i~f~  119 (476)
                      ++..++..+..+
T Consensus       163 ~~~~~~~~~~~~  174 (377)
T TIGR00890       163 GIIFLLVIVLGA  174 (377)
T ss_pred             HHHHHHHHHHHH
Confidence            877666554443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.85  E-value=2.7e-06  Score=87.46  Aligned_cols=85  Identities=16%  Similarity=0.185  Sum_probs=69.3

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  107 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~  107 (476)
                      +...++++..+.+++.|...+...+++.|.+++++      |.+++++++...++|..+++.+.+++.+..||+..|.+.
T Consensus        90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~  163 (392)
T PRK10473         90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTM  163 (392)
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHH
Confidence            44566777778889999888888999999887532      778889999999999999999999888889999999988


Q ss_pred             HHHHHHHHHHH
Q 011824          108 AIAMGISNMLF  118 (476)
Q Consensus       108 ~~~~~i~~i~f  118 (476)
                      ++..++..+..
T Consensus       164 ~~~~~i~~~~~  174 (392)
T PRK10473        164 AAMGILVLLLS  174 (392)
T ss_pred             HHHHHHHHHHH
Confidence            77666555443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.83  E-value=1.5e-06  Score=101.76  Aligned_cols=64  Identities=13%  Similarity=0.162  Sum_probs=56.8

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME   97 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~   97 (476)
                      +...++++.++.+++.|.+-|...++++|.+++++      |..+++++..+.++|.++|+.+++++.+.
T Consensus       102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46778888889999999999999999999998643      78899999999999999999999998765

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.82  E-value=2.1e-06  Score=88.09  Aligned_cols=72  Identities=17%  Similarity=0.134  Sum_probs=56.6

Q ss_pred             chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH
Q 011824           27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF  104 (476)
Q Consensus        27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F  104 (476)
                      .+...++++..+.++|.|.+.|...+...+..+++      +|.+.+++++.+.|+|..+|+.+.+++.+...+...+
T Consensus        92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~  163 (381)
T PRK03633         92 VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSR------NRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPW  163 (381)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH
Confidence            35677788888999999998888877777776643      2678899999999999999999999987654333333

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.81  E-value=4e-06  Score=88.17  Aligned_cols=83  Identities=11%  Similarity=0.207  Sum_probs=61.8

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHhhccchhHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGA  106 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa-~i~~~l~~~l~~~~g~~~~F~i  106 (476)
                      +...+++...+.+++.|...|.......+++++++      |..+.++++.+.++|. ++++++...+....||+..|.+
T Consensus       119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i  192 (452)
T PRK11273        119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYM  192 (452)
T ss_pred             cHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHH
Confidence            45566777788899999998988888999887532      6778899999999986 4566554344344599999999


Q ss_pred             HHHHHHHHHH
Q 011824          107 LAIAMGISNM  116 (476)
Q Consensus       107 ~~~~~~i~~i  116 (476)
                      .++..++..+
T Consensus       193 ~~~~~~~~~~  202 (452)
T PRK11273        193 PAFAAILVAL  202 (452)
T ss_pred             HHHHHHHHHH
Confidence            8776555433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.81  E-value=8.5e-06  Score=84.23  Aligned_cols=84  Identities=14%  Similarity=0.181  Sum_probs=66.8

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGA  106 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~-~g~~~~F~i  106 (476)
                      +...+++...+.++..+...|...++..|.+++++      |.++..+..++.++|.++++.+..++.+. .||+..|.+
T Consensus        93 ~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i  166 (402)
T PRK11902         93 ALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLL  166 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHH
Confidence            45555555556778888899999999999987543      67788888899999999999988888775 599999999


Q ss_pred             HHHHHHHHHHH
Q 011824          107 LAIAMGISNML  117 (476)
Q Consensus       107 ~~~~~~i~~i~  117 (476)
                      .++..++..+.
T Consensus       167 ~a~~~l~~~l~  177 (402)
T PRK11902        167 MAGLMLAGALT  177 (402)
T ss_pred             HHHHHHHHHHH
Confidence            88876655443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.81  E-value=3e-06  Score=93.98  Aligned_cols=85  Identities=18%  Similarity=0.246  Sum_probs=65.5

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc----------
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME----------   97 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~----------   97 (476)
                      +...++++.++.++|.|+.-|...+++++.++++      .|...+.+......+|.++++.++..+...          
T Consensus       254 s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~------~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~  327 (742)
T TIGR01299       254 GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQE------KRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSA  327 (742)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccc
Confidence            5677888899999999999999999999999753      266778888888889999888776555432          


Q ss_pred             ---cchhHHHHHHHHHHHHHHHHH
Q 011824           98 ---HGWGSAFGALAIAMGISNMLF  118 (476)
Q Consensus        98 ---~g~~~~F~i~~~~~~i~~i~f  118 (476)
                         .+|++.|++.++..++.++.+
T Consensus       328 ~~~~gWR~l~~i~~lp~ll~ll~~  351 (742)
T TIGR01299       328 YQFHSWRVFVIVCAFPCVFAIGAL  351 (742)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHH
Confidence               368888888777665554443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.81  E-value=3e-06  Score=87.50  Aligned_cols=76  Identities=13%  Similarity=0.082  Sum_probs=62.3

Q ss_pred             HHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Q 011824           33 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG  112 (476)
Q Consensus        33 ~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~~~~~~  112 (476)
                      ++...+.++|.|++.|...+++.|.+++++      |.++..+.....++|.++||.+++++.+. .|...|.+.+...+
T Consensus        92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~  164 (393)
T PRK11195         92 LLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYL  164 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            456677899999999999999999998633      78899999999999999999999999764 47777777766554


Q ss_pred             HHH
Q 011824          113 ISN  115 (476)
Q Consensus       113 i~~  115 (476)
                      ++.
T Consensus       165 ~~~  167 (393)
T PRK11195        165 LAA  167 (393)
T ss_pred             HHH
Confidence            443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.80  E-value=5.8e-06  Score=85.01  Aligned_cols=83  Identities=13%  Similarity=0.191  Sum_probs=65.5

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  107 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~  107 (476)
                      +...++++..+.++|.|...+...++..|.+++++      +..+..++..+..+|.++++.+.+++.++.||+..|.+.
T Consensus        95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~  168 (394)
T PRK11652         95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFL  168 (394)
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence            45667777888888888877877788888776422      566778888899999999999999998889999999987


Q ss_pred             HHHHHHHHH
Q 011824          108 AIAMGISNM  116 (476)
Q Consensus       108 ~~~~~i~~i  116 (476)
                      ++..++..+
T Consensus       169 ~~~~~~~~~  177 (394)
T PRK11652        169 LLLGAGVTF  177 (394)
T ss_pred             HHHHHHHHH
Confidence            765554433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.80  E-value=3.7e-06  Score=86.74  Aligned_cols=80  Identities=13%  Similarity=0.216  Sum_probs=64.3

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGA  106 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~-g~~~~F~i  106 (476)
                      +...++++..+.++|.|..-+...+.+.+.+++ +      |..+..++..+.++|..+++.+.+++.++. +|+..|.+
T Consensus        96 ~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~-~------~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~  168 (393)
T PRK09705         96 QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQ-R------TPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAW  168 (393)
T ss_pred             chHHHHHHHHHHHhHHHHHhhhhhHHHHHHccc-c------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            566778889999999999999999999888852 2      567888888999999999999999988775 89988766


Q ss_pred             HHHHHHHH
Q 011824          107 LAIAMGIS  114 (476)
Q Consensus       107 ~~~~~~i~  114 (476)
                      -++..++.
T Consensus       169 ~~~~~~~~  176 (393)
T PRK09705        169 WALPAVVA  176 (393)
T ss_pred             HHHHHHHH
Confidence            54443333

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.78  E-value=1.3e-06  Score=88.62  Aligned_cols=80  Identities=21%  Similarity=0.261  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hccchhH
Q 011824           31 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGS  102 (476)
Q Consensus        31 ~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~--------~~~g~~~  102 (476)
                      .++++..+.++|.|...+...+++.|.+++++      |.....++..+.++|.++++.+.+.+.        +..+|++
T Consensus        98 ~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~  171 (394)
T TIGR00883        98 LLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRI  171 (394)
T ss_pred             HHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHH
Confidence            56777788899999999999999999987543      677888999999999999988876654        3578999


Q ss_pred             HHHHHHHHHHHHHH
Q 011824          103 AFGALAIAMGISNM  116 (476)
Q Consensus       103 ~F~i~~~~~~i~~i  116 (476)
                      .|.+.++..+++..
T Consensus       172 ~~~~~~~~~~~~~~  185 (394)
T TIGR00883       172 PFLVSAVLVLIGLY  185 (394)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99987776555443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.76  E-value=5e-06  Score=85.26  Aligned_cols=82  Identities=15%  Similarity=0.158  Sum_probs=66.1

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  107 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~  107 (476)
                      +...++++..+.++|.|.. ++..+..++.++++      +|.++.+++..+.++|.++++++.+++.++.||+..|.+.
T Consensus        78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~------~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~  150 (368)
T TIGR00903        78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIREE------RRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI  150 (368)
T ss_pred             cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence            5778888999999999875 55555568887742      2788999999999999999999999999999999999986


Q ss_pred             HHHHHHHHH
Q 011824          108 AIAMGISNM  116 (476)
Q Consensus       108 ~~~~~i~~i  116 (476)
                      ++.-++..+
T Consensus       151 ~~l~~~~~~  159 (368)
T TIGR00903       151 AAVAAAGII  159 (368)
T ss_pred             HHHHHHHHH
Confidence            665444433

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.76  E-value=7.4e-06  Score=85.21  Aligned_cols=85  Identities=14%  Similarity=0.055  Sum_probs=69.2

Q ss_pred             chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824           27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA  106 (476)
Q Consensus        27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i  106 (476)
                      .+...++++..+.++|.|..-+...+...|.+++++      +.+...++..+.++|..+|+.+++++.++.||++.|.+
T Consensus       102 ~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~  175 (413)
T PRK15403        102 TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAI  175 (413)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            356778888889999988766666677888887533      56778899999999999999999999888899999999


Q ss_pred             HHHHHHHHHHH
Q 011824          107 LAIAMGISNML  117 (476)
Q Consensus       107 ~~~~~~i~~i~  117 (476)
                      .++..+++++.
T Consensus       176 ~~~~~~i~~~~  186 (413)
T PRK15403        176 IAVMGLIAFVG  186 (413)
T ss_pred             HHHHHHHHHHH
Confidence            88776666544

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.75  E-value=1e-06  Score=91.58  Aligned_cols=134  Identities=14%  Similarity=0.118  Sum_probs=82.5

Q ss_pred             ccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcc
Q 011824          262 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD  341 (476)
Q Consensus       262 ~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  341 (476)
                      +.+++.+...+..++..++    .+|.+       ..+.+.++.++.+++++..++.                       
T Consensus       267 ~~~~~~~~~~~~~~~~g~l----~dr~g-------~~~~~~~~~~l~~~~~~l~~~~-----------------------  312 (420)
T PRK09528        267 LNSFQVFLEALIMFFAPFI----INRIG-------AKNALLLAGTIMAVRIIGSGFA-----------------------  312 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHhC-------cchhhHHHHHHHHHHHHHHHhc-----------------------
Confidence            3444444444555554444    44432       2223566666666665554322                       


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH-HHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccc
Q 011824          342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY-AALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ  420 (476)
Q Consensus       342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl-~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~  420 (476)
                      .++++++...++.+++.....+...+++.+..|++.++...+. +.....+|..+++.+.+.+....        +|   
T Consensus       313 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~--------G~---  381 (420)
T PRK09528        313 TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI--------GF---  381 (420)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh--------Cc---
Confidence            2345666778888988888888888999999999999887654 55667778877777776554211        12   


Q ss_pred             cCcCchhHHHHHHHHHHHHHHHHHHHH
Q 011824          421 NINTGRFDYLYWLLAVLSVINFCAFLY  447 (476)
Q Consensus       421 ~ln~~~~~~~f~lla~l~~~~~~~~~~  447 (476)
                             ...|.+.+++.++..++.+.
T Consensus       382 -------~~~f~~~~~~~~i~~~~~~~  401 (420)
T PRK09528        382 -------QGTYLILGGIVLLFTLISVF  401 (420)
T ss_pred             -------hHHHHHHHHHHHHHHHHHHH
Confidence                   23566666666655555443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.74  E-value=1.3e-05  Score=85.24  Aligned_cols=74  Identities=20%  Similarity=0.266  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hccchhH
Q 011824           31 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGS  102 (476)
Q Consensus        31 ~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~--------~~~g~~~  102 (476)
                      .+.++.++.++|.|+.-|+..++++|.++++.      |..+..+...+.++|..+|..+...+.        .++||++
T Consensus       120 ~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~  193 (490)
T PRK10642        120 LLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRI  193 (490)
T ss_pred             HHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHH
Confidence            47788889999999999999999999998643      555677778888888888876654443        2589999


Q ss_pred             HHHHHHHH
Q 011824          103 AFGALAIA  110 (476)
Q Consensus       103 ~F~i~~~~  110 (476)
                      .|++.++.
T Consensus       194 ~f~i~~~~  201 (490)
T PRK10642        194 PFFIALPL  201 (490)
T ss_pred             HHHHHHHH
Confidence            99986654

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.74  E-value=5.1e-06  Score=85.25  Aligned_cols=84  Identities=14%  Similarity=0.115  Sum_probs=68.7

Q ss_pred             chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824           27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA  106 (476)
Q Consensus        27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i  106 (476)
                      .+.+.++++..+.+++.|...|...+...|.+++++      |.+.+.++..+.++|..+++.+.+++.+..||++.|.+
T Consensus        89 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~  162 (382)
T PRK10091         89 SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL  162 (382)
T ss_pred             CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence            357778888889999999888888888888776522      56678888899999999999999999888999999999


Q ss_pred             HHHHHHHHHH
Q 011824          107 LAIAMGISNM  116 (476)
Q Consensus       107 ~~~~~~i~~i  116 (476)
                      .++..++..+
T Consensus       163 ~~~~~~~~~~  172 (382)
T PRK10091        163 IAVFNIAVLA  172 (382)
T ss_pred             HHHHHHHHHH
Confidence            8876555444

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.74  E-value=1.5e-06  Score=92.09  Aligned_cols=78  Identities=17%  Similarity=0.312  Sum_probs=66.8

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  107 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~  107 (476)
                      +...++++..+.+++.|+..+...+++.|.++++      +|..++.+++.+.++|.++++.+.+++.++.||+..|.+.
T Consensus       107 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~  180 (496)
T PRK03893        107 GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKH------LRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIG  180 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence            5667788888999999999999999999999753      2677888999999999999999999999899999999875


Q ss_pred             HHHH
Q 011824          108 AIAM  111 (476)
Q Consensus       108 ~~~~  111 (476)
                      ++..
T Consensus       181 ~~~~  184 (496)
T PRK03893        181 ILPI  184 (496)
T ss_pred             HHHH
Confidence            5443

>TIGR00788 fbt folate/biopterin transporter

Probab=98.72  E-value=7.6e-07  Score=94.26  Aligned_cols=85  Identities=9%  Similarity=0.043  Sum_probs=69.5

Q ss_pred             hHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Q 011824           29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA  108 (476)
Q Consensus        29 ~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~~  108 (476)
                      .......+.+++++.+..+...-++..|+.+ ++++   ......++.|.+.++|.++|+.+++++.+.+||+..|.+.+
T Consensus       120 ~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a  195 (468)
T TIGR00788       120 AKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS---AGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITA  195 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---cCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence            3344446788999999999999999999998 3322   24556779999999999999999999999999999999988


Q ss_pred             HHHHHHHHH
Q 011824          109 IAMGISNML  117 (476)
Q Consensus       109 ~~~~i~~i~  117 (476)
                      +..++..+.
T Consensus       196 ~l~ll~~~~  204 (468)
T TIGR00788       196 ALLLLQLFV  204 (468)
T ss_pred             HHHHHHHHH
Confidence            877766443

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.72  E-value=1.3e-06  Score=88.05  Aligned_cols=86  Identities=15%  Similarity=0.143  Sum_probs=70.3

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHhhccchhHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF-TLVVYIQMEHGWGSAFGA  106 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~-~l~~~l~~~~g~~~~F~i  106 (476)
                      +...++++..+.+++.|...|...+++.|.+++++      |..++.++..+.++|..+++ ++.+.+.+..+|+..|.+
T Consensus        82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  155 (379)
T TIGR00881        82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIV  155 (379)
T ss_pred             hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHH
Confidence            56677888888999999999999999999998633      67788899999999999999 577777778899999998


Q ss_pred             HHHHHHHHHHHHH
Q 011824          107 LAIAMGISNMLFF  119 (476)
Q Consensus       107 ~~~~~~i~~i~f~  119 (476)
                      .++..++..+..+
T Consensus       156 ~~~~~~~~~~~~~  168 (379)
T TIGR00881       156 PGIIAIIVSLICF  168 (379)
T ss_pred             HHHHHHHHHHHHh
Confidence            8876655444443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.70  E-value=1.5e-06  Score=91.60  Aligned_cols=303  Identities=17%  Similarity=0.254  Sum_probs=176.5

Q ss_pred             HHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHHHHHHH
Q 011824           31 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAI  109 (476)
Q Consensus        31 ~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~-~g~~~~F~i~~~  109 (476)
                      .+.+..++-+++.|...|++..+.+...++++      |..+..+.|.+..+|.+++..++|++-+. .||...|++.++
T Consensus       130 ~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~  203 (466)
T KOG2532|consen  130 LLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGI  203 (466)
T ss_pred             hhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHH
Confidence            55777888999999999999999999998754      78999999999999999999999999888 999999999887


Q ss_pred             HHHHHHHHHHhhccceeecCCCCChhhH--HHHHHHHHHHhhccccCCcccccccccCCCCccccCCcccccCCchhhhh
Q 011824          110 AMGISNMLFFIGTPLYRHRLPGGSPLTR--VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLD  187 (476)
Q Consensus       110 ~~~i~~i~f~~~~~~~~~~~p~~~pl~~--~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  187 (476)
                      .-++-.++++.   .|. +.|+++|.-.  ..+.+.                                            
T Consensus       204 ~g~i~~~~w~~---~~~-d~P~~h~~is~~El~~I~--------------------------------------------  235 (466)
T KOG2532|consen  204 VGLIWFILWFL---FYS-DSPSKHPNISEKELKYIE--------------------------------------------  235 (466)
T ss_pred             HHHHHHHHHHH---Hhc-CCcccCCCCCHHHHHHHH--------------------------------------------
Confidence            65555544443   222 2344333211  111000                                            


Q ss_pred             HhhhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHH-------HHhhhhhhHHHHhhhccccccCeeecCC
Q 011824          188 KAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNV-------ILTEFLTLSVQQAYTMNTHMGKLKLPVT  260 (476)
Q Consensus       188 ~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~-------~~~Q~~s~~~~qa~~m~~~~~g~~ip~~  260 (476)
                      ..+...........||           |++++-.++|+..+-.+.       +..+++ ++..+..++|.+      ..+
T Consensus       236 ~~k~~~~~~~~~~vP~-----------~~i~ts~~vwai~~~~f~~~~~~~~l~~y~P-tY~~~VL~f~v~------~~G  297 (466)
T KOG2532|consen  236 KGKSEAHVKKKPPVPY-----------KAILTSPPVWAIWISAFGGNWGFYLLLTYLP-TYLKEVLGFDVR------ETG  297 (466)
T ss_pred             hcccccccCCCCCCCH-----------HHHHcCHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHhCCChh------hhh
Confidence            0000000000001354           233333344433222211       111111 121122222221      234


Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHH--HHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCC
Q 011824          261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVG--IGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTA  338 (476)
Q Consensus       261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~--iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~  338 (476)
                      ++.+++.+...+.-.+...+-..+.+| ...   .+..+|+.  +++...++++++.+...              +    
T Consensus       298 ~~salP~l~~~~~k~~~g~lsD~l~~~-~ls---~t~~rkifn~i~~~~~ai~l~~l~~~~--------------~----  355 (466)
T KOG2532|consen  298 FLSALPFLAMAIVKFVAGQLSDRLTFR-ILS---ETTVRKIFNTIAFGGPAVFLLVLAFTS--------------D----  355 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc-cCc---hHhHHHHHHhHHHHHHHHHHHeeeecC--------------C----
Confidence            566777777777777777776666555 322   34555664  34444444444433321              1    


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--h-cchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCC
Q 011824          339 MPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYE--E-APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQP  415 (476)
Q Consensus       339 ~~~~s~~wlip~~~l~~igEll~~p~~lef~~~--~-aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~  415 (476)
                         -+.+ .  +.++++++..+..-...-+.-.  . ||++. +..||+.....+++..+++.+++.+.+ .+    .-.
T Consensus       356 ---~~~~-~--a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a-~~l~g~~~~~~~~~~~~~P~~vg~~~~-~~----t~~  423 (466)
T KOG2532|consen  356 ---EHRL-L--AVILLTIAIGLSGFNISGFYKNHQDIAPQHA-GFVMGIINFVGALAGFIAPLLVGIIVT-DN----TRE  423 (466)
T ss_pred             ---Ccch-H--HHHHHHHHHHHcccchhhhHhhhhhccchHH-HHHHHHHHHHHHHHHHHHHHheeeEeC-CC----CHH
Confidence               0111 1  2344455544444444444433  3 77665 799999999999999999999876542 10    012


Q ss_pred             CcccccCcCchhHHHHHHHHHHHHHHHHHHHHhh
Q 011824          416 NWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSA  449 (476)
Q Consensus       416 ~~~~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~  449 (476)
                      +|          ...|++.+++.++..++|.+..
T Consensus       424 eW----------~~VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  424 EW----------RIVFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             HH----------HHHHHHHHHHHHHhchheeEee
Confidence            35          3578889999999888888776

>PRK11043 putative transporter; Provisional

Probab=98.70  E-value=1e-05  Score=83.34  Aligned_cols=85  Identities=14%  Similarity=0.223  Sum_probs=67.9

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  107 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~  107 (476)
                      +...++++..+.++|.+...+...++..|.+++++      +.+.++......++|..+++.+.+++.+++||+..|.+.
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~  166 (401)
T PRK11043         93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATL  166 (401)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            45667777788888888888888888899887532      566778888889999999999999999999999999988


Q ss_pred             HHHHHHHHHHH
Q 011824          108 AIAMGISNMLF  118 (476)
Q Consensus       108 ~~~~~i~~i~f  118 (476)
                      ++..++..+..
T Consensus       167 ~~~~~~~~~~~  177 (401)
T PRK11043        167 FAITLLLILPT  177 (401)
T ss_pred             HHHHHHHHHHH
Confidence            77666554443

>TIGR00889 2A0110 nucleoside transporter

Probab=98.69  E-value=1.1e-05  Score=84.23  Aligned_cols=105  Identities=16%  Similarity=0.245  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH-HHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCc
Q 011824          347 LLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAA-LAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTG  425 (476)
Q Consensus       347 lip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~-l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~  425 (476)
                      ++...++.++++.+..+....++.+.+|++.||..+|+.. ...++|..+|+.+.+.+....+    +++.+        
T Consensus       311 l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g----~~~~~--------  378 (418)
T TIGR00889       311 LFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMF----AYGTF--------  378 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc----cccCC--------
Confidence            4455788999999999999999999999999999999996 5678888888888775543221    00000        


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCcccc
Q 011824          426 RFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEV  466 (476)
Q Consensus       426 ~~~~~f~lla~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~  466 (476)
                      ....-|.+.+++.++..++++++.+   +++++-+++|+++
T Consensus       379 ~~~~~f~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~  416 (418)
T TIGR00889       379 DWQTMWLFFAGYIAILAVLFMIFFK---YSHNAIKVDDRDV  416 (418)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhC---CcccCCCCccccc
Confidence            0123556666666666655555554   3456666666654

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.69  E-value=2.5e-06  Score=90.12  Aligned_cols=83  Identities=18%  Similarity=0.126  Sum_probs=66.4

Q ss_pred             chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc---chhHH
Q 011824           27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH---GWGSA  103 (476)
Q Consensus        27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~---g~~~~  103 (476)
                      .+...+++...+.++|.|..-|...+.+++.+++++      |..++.++-.+.++|..+++.+..++.+..   +|+..
T Consensus       120 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~  193 (467)
T PRK09556        120 VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGM  193 (467)
T ss_pred             chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhH
Confidence            356777888888999999999999999999998754      667788888999999999998887776543   58888


Q ss_pred             HHHHHHHHHHHH
Q 011824          104 FGALAIAMGISN  115 (476)
Q Consensus       104 F~i~~~~~~i~~  115 (476)
                      |.+.++..++..
T Consensus       194 f~~~g~~~~~~~  205 (467)
T PRK09556        194 FIFPSIIALIIG  205 (467)
T ss_pred             HHHHHHHHHHHH
Confidence            888776554433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.68  E-value=4e-06  Score=85.73  Aligned_cols=82  Identities=13%  Similarity=0.254  Sum_probs=68.3

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc--hhHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFG  105 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g--~~~~F~  105 (476)
                      +...++++..+.++|.|...+...++..|.+++++      |..+..++..+.++|..+++.+.+.+.+..+  |+..|.
T Consensus        99 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~  172 (405)
T TIGR00891        99 GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFF  172 (405)
T ss_pred             cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHH
Confidence            56667888889999999999999999999997633      6788999999999999999999998887766  999998


Q ss_pred             HHHHHHHHHH
Q 011824          106 ALAIAMGISN  115 (476)
Q Consensus       106 i~~~~~~i~~  115 (476)
                      +.++..++.+
T Consensus       173 ~~~~~~~~~~  182 (405)
T TIGR00891       173 ISILPIIFAL  182 (405)
T ss_pred             HHHHHHHHHH
Confidence            8765554443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.66  E-value=2.1e-05  Score=80.82  Aligned_cols=51  Identities=16%  Similarity=-0.025  Sum_probs=40.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH
Q 011824           69 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  119 (476)
Q Consensus        69 ~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~~~~~~i~~i~f~  119 (476)
                      +..+-.++.++..+|.++|..+.+++.+++||+..|.+.++..++..+..+
T Consensus       131 ~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~  181 (390)
T TIGR02718       131 LAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVL  181 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            344555677777999999999999999999999999998887776555543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.65  E-value=7e-06  Score=87.07  Aligned_cols=84  Identities=15%  Similarity=0.116  Sum_probs=58.1

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh---------cc
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM---------EH   98 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~---------~~   98 (476)
                      +...++++..+.++|.+..-+ ....+++.++++.      |..+..+++...|+|+.+++.+.+.+..         ..
T Consensus       123 s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~------rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~  195 (476)
T PLN00028        123 SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI------VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFT  195 (476)
T ss_pred             CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh------eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh
Confidence            445666667778888876543 4456788886532      6778888888888888888776665532         25


Q ss_pred             chhHHHHHHHHHHHHHHHHH
Q 011824           99 GWGSAFGALAIAMGISNMLF  118 (476)
Q Consensus        99 g~~~~F~i~~~~~~i~~i~f  118 (476)
                      ||+..|.+.++..++..+..
T Consensus       196 gWr~~f~i~g~l~l~~~l~~  215 (476)
T PLN00028        196 AWRIAFFVPGLLHIIMGILV  215 (476)
T ss_pred             hhHHHHHHHHHHHHHHHHHH
Confidence            89999999887665544433

>PRK03699 putative transporter; Provisional

Probab=98.65  E-value=2.4e-05  Score=80.63  Aligned_cols=86  Identities=6%  Similarity=0.102  Sum_probs=66.8

Q ss_pred             chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-hccchhHHHH
Q 011824           27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHGWGSAFG  105 (476)
Q Consensus        27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~-~~~g~~~~F~  105 (476)
                      .+...++++..+.+++.|...+...+.+.+.+++++      |.......+...++|+.+++.+.+++. +..||+..|.
T Consensus        93 ~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~  166 (394)
T PRK03699         93 HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYA  166 (394)
T ss_pred             chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            356677788888999999999999999999986532      566777778888999999998888764 4579999999


Q ss_pred             HHHHHHHHHHHHH
Q 011824          106 ALAIAMGISNMLF  118 (476)
Q Consensus       106 i~~~~~~i~~i~f  118 (476)
                      +.++..++..+..
T Consensus       167 ~~~~~~~~~~~~~  179 (394)
T PRK03699        167 CIGLVYVAIFILT  179 (394)
T ss_pred             HHHHHHHHHHHHH
Confidence            8777665554433

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.64  E-value=1.7e-05  Score=80.92  Aligned_cols=89  Identities=13%  Similarity=0.262  Sum_probs=77.3

Q ss_pred             cchhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH
Q 011824           26 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFG  105 (476)
Q Consensus        26 ~~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~  105 (476)
                      ..+...+.++.++.++..|.|-+...+..+|..++++      |.++..+-+.+..+.-.+|.-+..++++..||+..|.
T Consensus        98 Ap~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~  171 (394)
T COG2814          98 APSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFL  171 (394)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHH
Confidence            3578889999999999999999999999999998754      7889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 011824          106 ALAIAMGISNMLFFI  120 (476)
Q Consensus       106 i~~~~~~i~~i~f~~  120 (476)
                      +-++.-++.++..+.
T Consensus       172 ~ia~l~ll~~~~~~~  186 (394)
T COG2814         172 AIAVLALLALLLLWK  186 (394)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777665555554443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.62  E-value=3.8e-05  Score=80.26  Aligned_cols=79  Identities=20%  Similarity=0.314  Sum_probs=63.8

Q ss_pred             hHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hccch
Q 011824           29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGW  100 (476)
Q Consensus        29 ~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~--------~~~g~  100 (476)
                      ...+.+...+.++|.|+.-|...++++|.+++++      |..+.++.+.+.++|.++++.+...+.        ..+||
T Consensus       124 ~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gW  197 (432)
T PRK10406        124 PALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGW  197 (432)
T ss_pred             HHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccch
Confidence            3467788889999999999999999999998643      566788889999999999887766554        25899


Q ss_pred             hHHHHHHHHHHHH
Q 011824          101 GSAFGALAIAMGI  113 (476)
Q Consensus       101 ~~~F~i~~~~~~i  113 (476)
                      +..|.+.++..++
T Consensus       198 r~~F~i~~~~~ll  210 (432)
T PRK10406        198 RIPFALGAVLAVV  210 (432)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999987765443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.60  E-value=9e-06  Score=84.88  Aligned_cols=306  Identities=12%  Similarity=0.068  Sum_probs=169.7

Q ss_pred             hHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh----hc---cchh
Q 011824           29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ----ME---HGWG  101 (476)
Q Consensus        29 ~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~----~~---~g~~  101 (476)
                      ...+++...+..++...+.-+..+++.|..++.+.     |.+..++.....++|.++...+.+.+-    +.   .+|.
T Consensus       103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~  177 (428)
T PF13347_consen  103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYR  177 (428)
T ss_pred             HHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHH
Confidence            34456666677899999999999999999876442     567777877888888876555555443    22   1677


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccceeecCCCCChhhHHHHHHHHHHHhhccccCCcccccccccCCCCccccCCcccccCC
Q 011824          102 SAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTD  181 (476)
Q Consensus       102 ~~F~i~~~~~~i~~i~f~~~~~~~~~~~p~~~pl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (476)
                      ..+.+.++..+++.++.....|. +.++++ +                    .          + +        ..    
T Consensus       178 ~~~~v~~iv~~v~~~i~~~~~ke-~~~~~~-~--------------------~----------~-~--------~~----  212 (428)
T PF13347_consen  178 WMALVLAIVGLVFFLITFFFVKE-RSVEVT-E--------------------Q----------E-K--------KI----  212 (428)
T ss_pred             HHHHHHHHHHHHHhhhhhheeee-cccccc-c--------------------c----------c-c--------cc----
Confidence            77777666666555555443332 000000 0                    0          0 0        00    


Q ss_pred             chhhhhHhhhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhhh-ccccccCeeecCC
Q 011824          182 DFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHMGKLKLPVT  260 (476)
Q Consensus       182 ~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~~-m~~~~~g~~ip~~  260 (476)
                        ++.+..                      .+.++-..+..++....+.+....-..+....+... +..+    + -.+
T Consensus       213 --~~~~~~----------------------~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~----~-~~~  263 (428)
T PF13347_consen  213 --SLRDSL----------------------RSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE----G-LIS  263 (428)
T ss_pred             --ccccch----------------------hhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc----h-hhH
Confidence              000000                      001111112233333444444443333333333332 2221    0 012


Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824          261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  340 (476)
Q Consensus       261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  340 (476)
                      .+..+..+..++..|+..++    .+|.+++       +-+.+|.++.+++.+...+...                    
T Consensus       264 ~~~~~~~~~~~v~~~~~~~l----~~r~gk~-------~~~~~~~~~~~~~~~~~~~~~~--------------------  312 (428)
T PF13347_consen  264 IFMLIFFVASIVGSPLWGRL----SKRFGKK-------KVYIIGLLLAALGFLLLFFLGP--------------------  312 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHccce-------eehhhhHHHHHHHHHHHHHHHh--------------------
Confidence            23334445555556665444    4554322       2366777777777776655431                    


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------hhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCC
Q 011824          341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP-------DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKG  413 (476)
Q Consensus       341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP-------~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~  413 (476)
                       -+.+|.++..++.+++--...+...+...+..+       ++..|++.|++.+..-+|..+++.+...+-...+     
T Consensus       313 -~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G-----  386 (428)
T PF13347_consen  313 -GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG-----  386 (428)
T ss_pred             -hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC-----
Confidence             245777788899999998888888888887776       4567999999999999999998888776544332     


Q ss_pred             CCCcccc--cCcCchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011824          414 QPNWLAQ--NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK  453 (476)
Q Consensus       414 ~~~~~~~--~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~  453 (476)
                         +.++  ..++.-....-.+++.+.++..++-+++.++|+
T Consensus       387 ---y~~~~~~q~~~~~~~i~~~~~~~p~~~~~~~~i~~~~y~  425 (428)
T PF13347_consen  387 ---YDANAAVQSASALSGIRILFSIVPAIFLLLAIIFMRFYP  425 (428)
T ss_pred             ---cCCCcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence               1111  112222333444455555555555556666665

>PRK09669 putative symporter YagG; Provisional

Probab=98.60  E-value=1.6e-05  Score=83.48  Aligned_cols=63  Identities=8%  Similarity=0.022  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------hhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhcc
Q 011824          345 YWLLIQYCLIGIAEVFCIVGLLEFLYEEAP-------DAMKSIGSAYAALAGGLGCFAASILNSIIKSVT  407 (476)
Q Consensus       345 ~wlip~~~l~~igEll~~p~~lef~~~~aP-------~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~  407 (476)
                      ++++...++.++++....+...+.+.+.++       ++..|...|++.+..-+|..+|+.+.+.+-...
T Consensus       320 ~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~  389 (444)
T PRK09669        320 WLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV  389 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            334555688999999999999999988876       456778889988888788877777776554333

>PRK09952 shikimate transporter; Provisional

Probab=98.59  E-value=9.3e-05  Score=77.58  Aligned_cols=76  Identities=18%  Similarity=0.234  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hccchhH
Q 011824           31 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGS  102 (476)
Q Consensus        31 ~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~--------~~~g~~~  102 (476)
                      .+.+...+.++|.|+.-|....++.+.+++++      |....+....+.++|.+++..+..++.        +++||+.
T Consensus       127 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~  200 (438)
T PRK09952        127 LLVTLRAIQGFAVGGEWGGAALLAVESAPKNK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRI  200 (438)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHH
Confidence            56777888999999999999999999888643      556667778888888888877666654        2579999


Q ss_pred             HHHHHHHHHH
Q 011824          103 AFGALAIAMG  112 (476)
Q Consensus       103 ~F~i~~~~~~  112 (476)
                      .|++.++..+
T Consensus       201 ~f~~~~~~~l  210 (438)
T PRK09952        201 PFLFSIVLVL  210 (438)
T ss_pred             HHHHHHHHHH
Confidence            9998876543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.58  E-value=2.6e-05  Score=81.60  Aligned_cols=85  Identities=13%  Similarity=0.201  Sum_probs=66.7

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HhhccchhHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY-IQMEHGWGSAFGA  106 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~-l~~~~g~~~~F~i  106 (476)
                      +...+++...+.+++.|..-|.....+.|.+++++      |..++++++.+.++|..+++.+.+. +..+.+|+.+|++
T Consensus       117 ~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~  190 (438)
T TIGR00712       117 SIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYF  190 (438)
T ss_pred             hHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHH
Confidence            34456677778889999988988899999887643      6789999999999999998877665 4445799999999


Q ss_pred             HHHHHHHHHHHH
Q 011824          107 LAIAMGISNMLF  118 (476)
Q Consensus       107 ~~~~~~i~~i~f  118 (476)
                      .++..++..+..
T Consensus       191 ~~~~~~i~~~~~  202 (438)
T TIGR00712       191 PAICAIIVALFA  202 (438)
T ss_pred             HHHHHHHHHHHH
Confidence            887766654443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.58  E-value=1.6e-05  Score=84.30  Aligned_cols=62  Identities=15%  Similarity=0.119  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------hhhHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 011824          344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP-------DAMKSIGSAYAALAGGLGCFAASILNSIIKS  405 (476)
Q Consensus       344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP-------~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~  405 (476)
                      .++++...++.++++....+...+++.+.+|       ++..|.+.|++.+..-+|..+++.+.+.+-.
T Consensus       324 ~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~  392 (473)
T PRK10429        324 ALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG  392 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555678899999999999999998877       5557779999998888888887777765543

>TIGR00897 2A0118 polyol permease family

Probab=98.55  E-value=9.9e-05  Score=76.32  Aligned_cols=74  Identities=11%  Similarity=0.110  Sum_probs=54.5

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHhhccchhHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGA  106 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa-~i~~~l~~~l~~~~g~~~~F~i  106 (476)
                      +...+++...+.++|.+..-+...+.+.+.+++++      |.++..++..+.++|. .+++.+.+++.+..||...++.
T Consensus       104 ~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~  177 (402)
T TIGR00897       104 NYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS  177 (402)
T ss_pred             cHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence            44555666666788877777777777777776532      7888889999999996 6789888888888886555544


Q ss_pred             H
Q 011824          107 L  107 (476)
Q Consensus       107 ~  107 (476)
                      .
T Consensus       178 ~  178 (402)
T TIGR00897       178 A  178 (402)
T ss_pred             H
Confidence            3

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.53  E-value=1.8e-05  Score=81.51  Aligned_cols=62  Identities=16%  Similarity=0.125  Sum_probs=46.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH-HHHHhHHHHHHHHHHHHHhh
Q 011824          343 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY-AALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       343 s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl-~~l~~a~g~~l~~~l~~~~~  404 (476)
                      +++|+++..++.+++.........++..+..|++.++...+. +.....+|+.+++.+.+.+.
T Consensus       306 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~  368 (396)
T TIGR00882       306 TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMY  368 (396)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHH
Confidence            356667777888988877777788888888899998886655 55677777777777766544

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.52  E-value=9.3e-06  Score=82.50  Aligned_cols=89  Identities=15%  Similarity=0.284  Sum_probs=74.1

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHhhccchhHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV--VYIQMEHGWGSAFG  105 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~--~~l~~~~g~~~~F~  105 (476)
                      +...+.+-.++-+.-+|.=-|.....++..|+.++      |.+..+++-.+-|+|+.+.+.++  +++..+++|+.+|+
T Consensus       116 s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~  189 (448)
T COG2271         116 SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFY  189 (448)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHH
Confidence            66677777777888888888999999999998644      78888899999999999999999  99999999999999


Q ss_pred             HHHHH-HHHHHHHHHhhc
Q 011824          106 ALAIA-MGISNMLFFIGT  122 (476)
Q Consensus       106 i~~~~-~~i~~i~f~~~~  122 (476)
                      .|++. ++++++.+..+|
T Consensus       190 ~pgiiaiival~~~~~~r  207 (448)
T COG2271         190 FPGIIAIIVALILLFLLR  207 (448)
T ss_pred             HHHHHHHHHHHHHHHHhC
Confidence            99875 556666665543

>TIGR00896 CynX cyanate transporter

Probab=98.50  E-value=4.2e-05  Score=77.45  Aligned_cols=80  Identities=18%  Similarity=0.246  Sum_probs=62.5

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc--chhHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH--GWGSAFG  105 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~--g~~~~F~  105 (476)
                      +...++++..+.++|.|...+...+...|.+++ +      |.++.+++..+.++|..+++.+.+.+.++.  +|+..|.
T Consensus        86 ~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~  158 (355)
T TIGR00896        86 GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-R------VGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALA  158 (355)
T ss_pred             cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-h------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            456677788888999998888888888877742 1      577888999999999999999988887664  3899988


Q ss_pred             HHHHHHHHH
Q 011824          106 ALAIAMGIS  114 (476)
Q Consensus       106 i~~~~~~i~  114 (476)
                      +.++..++.
T Consensus       159 ~~~~~~~~~  167 (355)
T TIGR00896       159 WWALPALLA  167 (355)
T ss_pred             HHHHHHHHH
Confidence            766554443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK15075 citrate-proton symporter; Provisional

Probab=98.50  E-value=4.7e-05  Score=79.58  Aligned_cols=73  Identities=19%  Similarity=0.153  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--------hhccchhH
Q 011824           31 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI--------QMEHGWGS  102 (476)
Q Consensus        31 ~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l--------~~~~g~~~  102 (476)
                      .+.++..+.++|.|..-|+..++.+|.+++++      |..+..++..+.++|..+++.+.+.+        .++.||+.
T Consensus       119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~  192 (434)
T PRK15075        119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRI  192 (434)
T ss_pred             HHHHHHHHhhccccccHHHHHHHHHhhCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHH
Confidence            46777888999999999999999999998643      67778888888888877777766655        24689999


Q ss_pred             HHHHHHH
Q 011824          103 AFGALAI  109 (476)
Q Consensus       103 ~F~i~~~  109 (476)
                      .|.+..+
T Consensus       193 ~f~~~~~  199 (434)
T PRK15075        193 PFLIGCL  199 (434)
T ss_pred             HHHHHHH
Confidence            9987544

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.44  E-value=5.8e-07  Score=91.96  Aligned_cols=88  Identities=23%  Similarity=0.367  Sum_probs=77.3

Q ss_pred             chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hhHHHH
Q 011824           27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFG  105 (476)
Q Consensus        27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g-~~~~F~  105 (476)
                      .+.+.+.+...+.++|...+-|...++++|.|+++.      |.+.|.||||+|++|+.+|.....++.+..+ |+++|.
T Consensus       119 ~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~  192 (493)
T KOG1330|consen  119 NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFR  192 (493)
T ss_pred             HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEE
Confidence            578888999999999999999999999999999743      8999999999999999999999999987766 999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 011824          106 ALAIAMGISNMLFFI  120 (476)
Q Consensus       106 i~~~~~~i~~i~f~~  120 (476)
                      ..++.+++..++..+
T Consensus       193 ~~avl~vi~~~L~~~  207 (493)
T KOG1330|consen  193 GSAVLGVIVGLLVFL  207 (493)
T ss_pred             eehHHHHHHHHHHHh
Confidence            988887766555443

>TIGR01272 gluP glucose/galactose transporter

Probab=98.40  E-value=0.00022  Score=71.35  Aligned_cols=87  Identities=10%  Similarity=0.064  Sum_probs=68.8

Q ss_pred             cchhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc--------
Q 011824           26 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME--------   97 (476)
Q Consensus        26 ~~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~--------   97 (476)
                      ..+...+.+++.+++.|.+...+..++++++.-++++      +.+..|+--.+..+|++++|++.+.+..+        
T Consensus         7 ~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~   80 (310)
T TIGR01272         7 QRYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQ   80 (310)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhh
Confidence            4578899999999999999999999999999987644      56677888888999999999999876521        


Q ss_pred             --------cchhHHHHHHHHHHHHHHHHH
Q 011824           98 --------HGWGSAFGALAIAMGISNMLF  118 (476)
Q Consensus        98 --------~g~~~~F~i~~~~~~i~~i~f  118 (476)
                              ..|++.|++-++...+..+++
T Consensus        81 ~~~~~~~~~~~~~~yl~ia~~~~~~~i~~  109 (310)
T TIGR01272        81 VATANAEAAKVHTPYLLLAGALAVLAIIF  109 (310)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    468889985555444433333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.36  E-value=0.00018  Score=74.72  Aligned_cols=86  Identities=20%  Similarity=0.214  Sum_probs=69.3

Q ss_pred             chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh------ccch
Q 011824           27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM------EHGW  100 (476)
Q Consensus        27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~------~~g~  100 (476)
                      .+...++++..+.++|.|..-|...+...+.+++++      |.....++..+.++|..+++.+.+++.+      ..||
T Consensus        94 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gw  167 (412)
T TIGR02332        94 TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARANALFMIAMPVTMALGLILSGYILALDGLMALKGW  167 (412)
T ss_pred             cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccch
Confidence            346678888899999999999998888999998522      6778889999999999999999988853      3699


Q ss_pred             hHHHHHHHHHHHHHHHHH
Q 011824          101 GSAFGALAIAMGISNMLF  118 (476)
Q Consensus       101 ~~~F~i~~~~~~i~~i~f  118 (476)
                      ++.|.+.++..++..++.
T Consensus       168 r~~f~~~~~~~l~~~~~~  185 (412)
T TIGR02332       168 QWLFLLEGFPSVILGVMT  185 (412)
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            999999777655444333

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11462 putative transporter; Provisional

Probab=98.24  E-value=0.00058  Score=72.18  Aligned_cols=84  Identities=8%  Similarity=0.097  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-------cchhH
Q 011824           30 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-------HGWGS  102 (476)
Q Consensus        30 ~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~-------~g~~~  102 (476)
                      ..+++...+..++.-++.-.-.++.++.-++  ++|   |.+..+++..+.++|.++++.+...+.+.       .||..
T Consensus       110 ~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d--~~e---Rt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~  184 (460)
T PRK11462        110 IYAAITYTLLTLLYTVVNIPYCALGGVITND--PTQ---RISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQG  184 (460)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHhcCC--HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHH
Confidence            3344444455677777777888888888765  333   77888899999999988887765443322       24666


Q ss_pred             HHHHHHHHHHHHHHHH
Q 011824          103 AFGALAIAMGISNMLF  118 (476)
Q Consensus       103 ~F~i~~~~~~i~~i~f  118 (476)
                      ...+.++..++...+.
T Consensus       185 ~~~i~~ii~~i~~~i~  200 (460)
T PRK11462        185 GIAVLSVVAFMMLAFC  200 (460)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5555555444444333

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.22  E-value=0.00038  Score=73.85  Aligned_cols=85  Identities=14%  Similarity=0.188  Sum_probs=70.8

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh------hccchh
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ------MEHGWG  101 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~------~~~g~~  101 (476)
                      +.+.+.+-..++++-.+..-|+....++..|++++      +..-+.+||.+.++|.++|.+++..+.      ...||+
T Consensus       133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~  206 (495)
T KOG2533|consen  133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWR  206 (495)
T ss_pred             hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCce
Confidence            56667777889999999999999999999998754      667778999999999999999998863      357999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 011824          102 SAFGALAIAMGISNMLF  118 (476)
Q Consensus       102 ~~F~i~~~~~~i~~i~f  118 (476)
                      +.|++.++.+++..++.
T Consensus       207 ~~FiI~G~i~~~~gi~~  223 (495)
T KOG2533|consen  207 WLFIIEGVITLVLGIVV  223 (495)
T ss_pred             eehhHHHHHHHHHHheE
Confidence            99999998776554433

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.20  E-value=0.0023  Score=65.31  Aligned_cols=62  Identities=11%  Similarity=0.162  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 011824          344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS  405 (476)
Q Consensus       344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~  405 (476)
                      .+-+.+..+++|+|--+.....+...-+.++++..|+.+|+|...++++..++..+.+....
T Consensus       301 ~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D  362 (403)
T PF03209_consen  301 PWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRD  362 (403)
T ss_pred             chHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567888999999999999999999999999999999999999988777777666665443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.20  E-value=0.0015  Score=69.60  Aligned_cols=80  Identities=13%  Similarity=0.162  Sum_probs=65.1

Q ss_pred             hHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh------------
Q 011824           29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM------------   96 (476)
Q Consensus        29 ~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~------------   96 (476)
                      ...++++..+.++|.|+.-|....++.+.++++.      |..+.++++.+.++|.++++.+...+..            
T Consensus       115 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~  188 (502)
T TIGR00887       115 MATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADE  188 (502)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence            5678899999999999999999999999998743      7788889999999999998877765421            


Q ss_pred             -----------ccchhHHHHHHHHHHHHH
Q 011824           97 -----------EHGWGSAFGALAIAMGIS  114 (476)
Q Consensus        97 -----------~~g~~~~F~i~~~~~~i~  114 (476)
                                 ..+|++.|.+.++..++.
T Consensus       189 ~~~~~~~~~~~~~~WR~~~~~~~ip~~i~  217 (502)
T TIGR00887       189 ASCTGSCVPAVDYMWRILIGFGAVPALLA  217 (502)
T ss_pred             ccccccccchhcccHHHHHHHHHHHHHHH
Confidence                       247999998777655443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.11  E-value=0.00073  Score=70.31  Aligned_cols=85  Identities=11%  Similarity=0.090  Sum_probs=65.3

Q ss_pred             chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh----------
Q 011824           27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM----------   96 (476)
Q Consensus        27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~----------   96 (476)
                      .+...+.++..+.++|.|...+...+.+.+..++++      +.+..++.....++|+.+++.+.+.+..          
T Consensus        92 ~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~  165 (410)
T TIGR00885        92 MNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDV  165 (410)
T ss_pred             ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh
Confidence            356778889999999999999999999988765432      4556778888999999999999887732          


Q ss_pred             ----------------ccchhHHHHHHHHHHHHHHHH
Q 011824           97 ----------------EHGWGSAFGALAIAMGISNML  117 (476)
Q Consensus        97 ----------------~~g~~~~F~i~~~~~~i~~i~  117 (476)
                                      ..+|+..|++.++..++..++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~  202 (410)
T TIGR00885       166 LDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL  202 (410)
T ss_pred             hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            246999998777755544333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10133 L-fucose transporter; Provisional

Probab=98.00  E-value=0.0026  Score=66.82  Aligned_cols=63  Identities=17%  Similarity=0.108  Sum_probs=48.5

Q ss_pred             chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011824           27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ   95 (476)
Q Consensus        27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~   95 (476)
                      .+...+++++.+.++|.|...+...+++.|..++ +.     +....+++.....+|..+|+.+.+.+.
T Consensus       115 ~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~-~~-----~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE-SS-----GHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCh-hh-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677889999999999999999999999976433 21     333466777788889999888776543

>PRK03545 putative arabinose transporter; Provisional

Probab=97.93  E-value=0.00036  Score=71.70  Aligned_cols=83  Identities=17%  Similarity=0.047  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhH
Q 011824          299 QRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK  378 (476)
Q Consensus       299 ~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~k  378 (476)
                      +-+.++.++.+++.+..+..                       .+.++++...+++|+++....|....++.+..|++.|
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r  131 (390)
T PRK03545         75 KLLIGLFVLFIASHVLSALA-----------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKK  131 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhh
Confidence            34667777777766554432                       2355666677899999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          379 SIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       379 g~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      +..+|++....++|..+++.+.....
T Consensus       132 ~~~~g~~~~~~~~g~~ig~~l~~~l~  157 (390)
T PRK03545        132 AQALSLLATGTALAMVLGLPLGRVIG  157 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            99999999999999999988876643

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.89  E-value=0.00049  Score=72.14  Aligned_cols=87  Identities=14%  Similarity=0.093  Sum_probs=66.4

Q ss_pred             chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824           27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA  106 (476)
Q Consensus        27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i  106 (476)
                      .+.....+.+.+..+|....+-..-++..+.-++++..    +...-++.|.+.++|++++..+.|++.++.+++..|.+
T Consensus        84 ~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i  159 (433)
T PF03092_consen   84 SSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLI  159 (433)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehH
Confidence            34445556667788888888888888888777554422    44555688999999999999999999999999999998


Q ss_pred             HHHHHHHHHHH
Q 011824          107 LAIAMGISNML  117 (476)
Q Consensus       107 ~~~~~~i~~i~  117 (476)
                      +++...+.++.
T Consensus       160 ~~~~~~l~~~~  170 (433)
T PF03092_consen  160 SAALPLLMLIV  170 (433)
T ss_pred             HHHHHHHHHHH
Confidence            87766555443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.88  E-value=1.1e-05  Score=82.77  Aligned_cols=143  Identities=17%  Similarity=0.173  Sum_probs=105.7

Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824          261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  340 (476)
Q Consensus       261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  340 (476)
                      .+|..-.+.-+++.|++..+=    .|       .+..+-|++|.++-+++.+..++.                      
T Consensus        72 ll~~vf~v~~~i~sPl~gyLa----dr-------yNR~~v~~vG~~iW~~Av~~~~fs----------------------  118 (493)
T KOG1330|consen   72 LLQTVFIVVFMIASPLFGYLA----DR-------YNRKRVIAVGIFIWTLAVFASGFS----------------------  118 (493)
T ss_pred             chhHHHHHHHHHHHHHHHHHH----hh-------cCcceEEeeHHHHHHHHHHHHHHH----------------------
Confidence            345444555556778877753    33       234446889999988887765443                      


Q ss_pred             chhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCccc
Q 011824          341 DLSAYWLL-IQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLA  419 (476)
Q Consensus       341 ~~s~~wli-p~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~  419 (476)
                        +.+||+ ..-.++|+||.-.+|..-.++.+..|+..||.++|+++++.-+|+.+|...++.+...+.       .|- 
T Consensus       119 --~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-------~Wr-  188 (493)
T KOG1330|consen  119 --NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-------WWR-  188 (493)
T ss_pred             --HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc-------ceE-
Confidence              346766 467899999999999999999999999999999999999999999999888877665442       352 


Q ss_pred             ccCcCchhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 011824          420 QNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR  455 (476)
Q Consensus       420 ~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~~  455 (476)
                               +-|++-++++++.+++.+++.+-=+|+
T Consensus       189 ---------~af~~~avl~vi~~~L~~~f~~eP~rg  215 (493)
T KOG1330|consen  189 ---------WAFRGSAVLGVIVGLLVFLFVREPERG  215 (493)
T ss_pred             ---------EEEEeehHHHHHHHHHHHhhccCcccc
Confidence                     346677888887777766666544443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.84  E-value=0.00046  Score=69.69  Aligned_cols=78  Identities=15%  Similarity=0.059  Sum_probs=56.5

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh----------c
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM----------E   97 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~----------~   97 (476)
                      +...++++..+.+++.+.+ +...+.++|.+++++      |....+++..+.|+|..+++.+.+.+..          +
T Consensus        90 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~  162 (366)
T TIGR00886        90 SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH  162 (366)
T ss_pred             hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            5666777888888887766 456788899887533      6778888888888998888877766643          3


Q ss_pred             cchhHHH-HHHHHHHH
Q 011824           98 HGWGSAF-GALAIAMG  112 (476)
Q Consensus        98 ~g~~~~F-~i~~~~~~  112 (476)
                      .+|++.| .+.++...
T Consensus       163 ~~w~~~~~~~~~~~~~  178 (366)
T TIGR00886       163 LAWGWAFVIVPAGILL  178 (366)
T ss_pred             ccccchhHHHHHHHHH
Confidence            4899999 44444433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.82  E-value=0.0013  Score=67.85  Aligned_cols=109  Identities=14%  Similarity=-0.008  Sum_probs=80.0

Q ss_pred             ccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcc
Q 011824          262 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD  341 (476)
Q Consensus       262 ~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  341 (476)
                      ..+...+...+..|+...+.    +|.       ...+-+.+++++.+++.+..+..                       
T Consensus        60 ~~~~~~~~~~~~~~~~g~l~----Dr~-------grr~~~~~~~~~~~~~~~~~~~~-----------------------  105 (394)
T PRK10213         60 SVTVTAFVAMFASLFITQTI----QAT-------DRRYVVILFAVLLTLSCLLVSFA-----------------------  105 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHh----ccc-------CcHHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence            33455666666666665543    442       22234567777777766554322                       


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      .+.++++...++.|++.-...|.....+.+..|++.|+..+|++....++|..+++.+...+.
T Consensus       106 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~  168 (394)
T PRK10213        106 NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLG  168 (394)
T ss_pred             ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            235666677799999999999999999999999999999999999999999999988887654

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=97.81  E-value=0.00065  Score=67.81  Aligned_cols=132  Identities=19%  Similarity=0.175  Sum_probs=92.9

Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824          261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  340 (476)
Q Consensus       261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  340 (476)
                      ++.+...+...+..|+...+..+..+|           +-+.+|.++.+++.+...+.                      
T Consensus        36 ~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~----------------------   82 (352)
T PF07690_consen   36 LLFSAFFLGSALFSPFAGYLSDRFGRR-----------RVLIIGLLLFALGSLLLAFA----------------------   82 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHS-HH-----------HHHHHHHHHHHHHHHHHHHH----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCe-----------eeEeehhhhhhhHHHHhhhh----------------------
Confidence            455555666667777766654443222           24667777777774443321                      


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccc
Q 011824          341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ  420 (476)
Q Consensus       341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~  420 (476)
                       .+.++++...++.|+++....+....++.+..|++.|+..+|++.....+|..+++.+...+....        +|   
T Consensus        83 -~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~--------~~---  150 (352)
T PF07690_consen   83 -SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF--------GW---  150 (352)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC--------HH---
T ss_pred             -hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc--------cc---
Confidence             112356778899999999999999999999999999999999999999999999999887654211        12   


Q ss_pred             cCcCchhHHHHHHHHHHHHHHHHH
Q 011824          421 NINTGRFDYLYWLLAVLSVINFCA  444 (476)
Q Consensus       421 ~ln~~~~~~~f~lla~l~~~~~~~  444 (476)
                             ...|++.++++++..++
T Consensus       151 -------~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  151 -------RWAFLISAILSLIAAIL  167 (352)
T ss_dssp             -------CCHHHHHHHHHHHHHHH
T ss_pred             -------ccccccccchhhhhhhh
Confidence                   12566677777766653

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.80  E-value=0.00091  Score=68.23  Aligned_cols=110  Identities=13%  Similarity=0.048  Sum_probs=79.7

Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824          261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  340 (476)
Q Consensus       261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  340 (476)
                      ++.++..+...+..|+...+..+..||           +-+.++.++.+++.+..+..                      
T Consensus        51 ~~~~~~~~~~~~~~~~~G~l~Dr~g~r-----------~~~~~~~~~~~~~~~~~~~~----------------------   97 (405)
T TIGR00891        51 SLISAALISRWFGALMFGLWGDRYGRR-----------LPMVTSIVLFSAGTLACGFA----------------------   97 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHHh----------------------
Confidence            455566666667777766665443222           23455666666555443322                      


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                       .+.++++...++.|+++....+....++.+..|++.|+..+|++....++|..+++.+...+.
T Consensus        98 -~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~  160 (405)
T TIGR00891        98 -PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVV  160 (405)
T ss_pred             -ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             234555667899999999999999999999999999999999999999999999998877654

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=97.77  E-value=0.00089  Score=67.96  Aligned_cols=110  Identities=15%  Similarity=-0.047  Sum_probs=78.0

Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824          261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  340 (476)
Q Consensus       261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  340 (476)
                      ++.+...+...+..|+..++.    +|.+       ..+-+.+|.++.+++.+..+..                      
T Consensus        44 ~~~~~~~~~~~~~~~~~g~l~----d~~g-------~r~~~~~~~~~~~~~~~~~~~~----------------------   90 (385)
T TIGR00710        44 MTLTLYLLGFAAGQLLWGPLS----DRYG-------RRPVLLLGLFIFALSSLGLALS----------------------   90 (385)
T ss_pred             HHHHHHHHHHHHHHHhhhhHH----HhcC-------ChHHHHHHHHHHHHHHHHHHHH----------------------
Confidence            344555555556666655443    4422       1223556777766666554332                      


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                       .+.++++...++.++++....+....++.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus        91 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  153 (385)
T TIGR00710        91 -NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL  153 (385)
T ss_pred             -ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             234556667899999999999999999999999999999999999999999988888877544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.77  E-value=0.00056  Score=68.96  Aligned_cols=111  Identities=14%  Similarity=-0.023  Sum_probs=81.1

Q ss_pred             CcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 011824          260 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM  339 (476)
Q Consensus       260 ~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  339 (476)
                      +++.++..+..++..|+..++..+..+|+           -+.++.++.+++.+..+..                     
T Consensus        32 ~~~~~~~~~~~~~~~~~~g~l~d~~g~r~-----------~~~~~~~~~~~~~~~~~~~---------------------   79 (399)
T TIGR00893        32 GYVFSAFSWGYVVGQFPGGWLLDRFGARK-----------TLAVFIVIWGVFTGLQAFA---------------------   79 (399)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHhcCcce-----------eeHHHHHHHHHHHHHHHHH---------------------
Confidence            34556666777777777666544433221           2445666655555444332                     


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          340 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       340 ~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                        .+.++++...++.|++.....+....++.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus        80 --~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  142 (399)
T TIGR00893        80 --GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWIL  142 (399)
T ss_pred             --cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence              234556677899999999999999999999999999999999999999999999998887543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=97.77  E-value=0.0015  Score=65.33  Aligned_cols=115  Identities=9%  Similarity=0.029  Sum_probs=81.9

Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824          261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  340 (476)
Q Consensus       261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  340 (476)
                      ++.++..+..++..|+..++..+..||           +-+.++.++.+++..........                 ..
T Consensus        38 ~~~~~~~~~~~i~~~~~G~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~~~-----------------~~   89 (365)
T TIGR00900        38 LAALAGMLPYVVLSPIAGALADRYDRK-----------KVMIGADLIRAVLVAVLPFVALL-----------------GG   89 (365)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHhhchh-----------HHHHHHHHHHHHHHHHHHHHHHc-----------------CC
Confidence            455566666677777766654443222           12445555555555544443320                 01


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                       .+.++++...++.+++..+..|....++.+..|++.|+..+|++.....+|..+++.+.....
T Consensus        90 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  152 (365)
T TIGR00900        90 -LNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY  152 (365)
T ss_pred             -CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence             356667777899999999999999999999999999999999999999999999988877654

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.76  E-value=0.033  Score=59.18  Aligned_cols=63  Identities=19%  Similarity=0.268  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccC
Q 011824          344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTG  408 (476)
Q Consensus       344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~  408 (476)
                      -+|.+-  ++.|+.--=..+..=++..++.|++..+...|+|.++.=..+.+|+++.+++...++
T Consensus       382 ~f~~~a--~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg  444 (477)
T PF11700_consen  382 EFWVLA--VLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG  444 (477)
T ss_pred             HHHHHH--HHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            344443  566676667788888999999999999999999999999999999999998876653

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.76  E-value=0.002  Score=66.28  Aligned_cols=109  Identities=13%  Similarity=-0.006  Sum_probs=76.6

Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824          261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  340 (476)
Q Consensus       261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  340 (476)
                      ++.+...+..++..++..++..+..+|           +-+.++.++.+++.+..+..                      
T Consensus        54 ~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~----------------------  100 (406)
T PRK11551         54 WAFSAGILGLLPGALLGGRLADRIGRK-----------RILIVSVALFGLFSLATAQA----------------------  100 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCc-----------hhHHHHHHHHHHHHHHHHHh----------------------
Confidence            445555556666666655554333222           23555666555554433221                      


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824          341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  403 (476)
Q Consensus       341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~  403 (476)
                       .+.++++...++.+++.-...|.....+.+..|++.|+..+|++.....+|..+++.+....
T Consensus       101 -~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  162 (406)
T PRK11551        101 -WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLA  162 (406)
T ss_pred             -ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             23456667789999999999999999999999999999999999999999999988776543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=97.76  E-value=0.019  Score=60.51  Aligned_cols=60  Identities=8%  Similarity=-0.065  Sum_probs=46.0

Q ss_pred             chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011824           27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY   93 (476)
Q Consensus        27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~   93 (476)
                      .+...+++.-++.++| |..-+.....+.+.|++++      +..+..++-...|+|..++.++.+.
T Consensus       126 ~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi~~g~G~~G~~l~~~l~p~  185 (462)
T PRK15034        126 TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGINGGLGNLGVSVMQLVAPL  185 (462)
T ss_pred             CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3567788888888898 5566888888999998643      6778888877888888777666654

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.71  E-value=0.002  Score=70.82  Aligned_cols=86  Identities=16%  Similarity=0.207  Sum_probs=71.8

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc---------
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH---------   98 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~---------   98 (476)
                      ....++++.++.++|.|..-+...+++.|.+++++      +..++.+++.+.++|..+|+++++++.+.+         
T Consensus       171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~  244 (633)
T TIGR00805       171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTE  244 (633)
T ss_pred             eehhhHHHHHHHhccCCcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCC
Confidence            45678899999999999999999999999998644      678999999999999999999999887543         


Q ss_pred             -------------chhHHHHHHHHHHHHHHHHHH
Q 011824           99 -------------GWGSAFGALAIAMGISNMLFF  119 (476)
Q Consensus        99 -------------g~~~~F~i~~~~~~i~~i~f~  119 (476)
                                   +|+.+|++.++..++..+.++
T Consensus       245 ~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~  278 (633)
T TIGR00805       245 DVILTPTDPRWIGAWWIGFLICGGVALLTSIPFF  278 (633)
T ss_pred             CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         388999998877666555444

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.68  E-value=0.009  Score=61.78  Aligned_cols=63  Identities=10%  Similarity=0.106  Sum_probs=49.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHH-HHHhHHHHHHHHHHHHHhh
Q 011824          342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYA-ALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~-~l~~a~g~~l~~~l~~~~~  404 (476)
                      .+++|+++.-.+.++---+.-...+-++++..|+++.++...+. .++.++|..+.+.+.+..+
T Consensus       310 ~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~ly  373 (412)
T PF01306_consen  310 TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLY  373 (412)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhH
Confidence            45678888889999998899999999999999999998888775 4777788877666665443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=97.68  E-value=0.0031  Score=65.57  Aligned_cols=109  Identities=15%  Similarity=0.009  Sum_probs=78.5

Q ss_pred             ccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcc
Q 011824          262 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD  341 (476)
Q Consensus       262 ~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  341 (476)
                      ..+...+...+..++..++.    +|.+       +.+-+.+++++.+++.+..++.                       
T Consensus        48 ~~s~~~~~~~~~~~~~g~l~----dr~G-------~r~~~~~~~~~~~~~~~~~~~~-----------------------   93 (412)
T TIGR02332        48 AATLFYAAYVICGIPSNIML----AIIG-------ARRWIAGIMVLWGIASTATMFA-----------------------   93 (412)
T ss_pred             HHHHHHHHHHHHHhhHHHHH----HHhC-------hHHHHHHHHHHHHHHHHHHHHh-----------------------
Confidence            33444444455555555443    4432       1123566777777766655432                       


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      .+.++++...++.|++|....|.....+.+..|++.|+..+|++....++|..+++.+...+.
T Consensus        94 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~  156 (412)
T TIGR02332        94 TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYIL  156 (412)
T ss_pred             cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            235667778899999999999999999999999999999999999999999999988877553

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.63  E-value=0.011  Score=61.84  Aligned_cols=63  Identities=10%  Similarity=0.222  Sum_probs=45.6

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ   95 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~   95 (476)
                      +....++--.+..++.-.+.-.-.++.+...++  ++|   |.+..+|..++.|+|.++...+.+.+.
T Consensus       111 k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d--~~E---R~~l~s~R~~~~~~g~~l~~~~~~plv  173 (467)
T COG2211         111 KLIYALVTYMLLGLGYTLVNIPYGALGPEITQD--PQE---RASLTSWRMVFASLGGLLVAVLFPPLV  173 (467)
T ss_pred             chHHHHHHHHHHHHHHHheeCchhhcchhhcCC--HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455566777777777778888888765  444   677888999999999888777766554

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=97.58  E-value=0.0031  Score=66.45  Aligned_cols=111  Identities=14%  Similarity=-0.033  Sum_probs=81.8

Q ss_pred             CcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 011824          260 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM  339 (476)
Q Consensus       260 ~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  339 (476)
                      ++..+...+..++..|+..++..+..+|           +-+.+|.++.+++.+..+..                     
T Consensus        40 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~---------------------   87 (485)
T TIGR00711        40 QWVITSYMLANAISIPLTGWLAKRFGTR-----------RLFLISTFAFTLGSLLCGVA---------------------   87 (485)
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHhCc---------------------
Confidence            4556666667777777766664443222           23556666666665544321                     


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          340 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       340 ~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                        .+.++++...++.|++.....|.....+.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus        88 --~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  150 (485)
T TIGR00711        88 --PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII  150 (485)
T ss_pred             --CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc
Confidence              234556777899999999999999999999999999999999999999999999988877653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=97.57  E-value=0.0032  Score=64.56  Aligned_cols=111  Identities=11%  Similarity=-0.062  Sum_probs=80.8

Q ss_pred             CcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 011824          260 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM  339 (476)
Q Consensus       260 ~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  339 (476)
                      ++..+.+.+..++..|+..++.    +|.       ...+-+.+|.++.+++.+..+..                     
T Consensus        41 g~~~s~~~~~~~~~~~~~g~l~----dr~-------g~r~~~~~~~~~~~~~~~l~~~~---------------------   88 (382)
T PRK10091         41 GHMISYYALGVVVGAPIIALFS----SRY-------SLKHILLFLVALCVIGNAMFTLS---------------------   88 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH----ccC-------ccHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence            3455666777777777766553    442       22224566777777766554432                     


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          340 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       340 ~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                        .+.++++...++.|+++-...+.....+.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus        89 --~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  151 (382)
T PRK10091         89 --SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS  151 (382)
T ss_pred             --CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh
Confidence              235666677899999999999999999999999999999999999888899888887776543

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=97.56  E-value=0.0029  Score=64.88  Aligned_cols=109  Identities=14%  Similarity=0.029  Sum_probs=75.7

Q ss_pred             ccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcc
Q 011824          262 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD  341 (476)
Q Consensus       262 ~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  341 (476)
                      ..++..+...+..|+..++..+..||           +-+.+|.++.+++.+.....                       
T Consensus        43 ~~~~~~~~~~~~~~~~G~l~Dr~g~r-----------~~l~~~~~~~~i~~~~~~~~-----------------------   88 (392)
T PRK10473         43 AFSVYLAGMAAAMLFAGKIADRSGRK-----------PVAIPGAALFIIASLLCSLA-----------------------   88 (392)
T ss_pred             HHHHHHHHHHHHHHhHhHHHHHhCCh-----------HHHHHHHHHHHHHHHHHHHh-----------------------
Confidence            33444445556667766665443222           12455666666655443321                       


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      .+.++++...++.+++.-+..+.....+.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus        89 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~  151 (392)
T PRK10473         89 ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM  151 (392)
T ss_pred             CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            234555667789999999999999999999999999999999999888888888887776543

>PRK10054 putative transporter; Provisional

Probab=97.55  E-value=0.0049  Score=63.62  Aligned_cols=110  Identities=7%  Similarity=-0.013  Sum_probs=75.1

Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824          261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  340 (476)
Q Consensus       261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  340 (476)
                      +..++..+..++..|+..++..+..+|           +-+.+|.++.+++++..++..                     
T Consensus        47 ~~~s~~~~~~~~~~~~~G~l~Dr~g~k-----------~~~~~~~~~~~~~~~~~~~~~---------------------   94 (395)
T PRK10054         47 YAMTIALTIGVVFSLGFGILADKFDKK-----------RYMLLAITAFASGFIAIPLVN---------------------   94 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCcc-----------hhHHHHHHHHHHHHHHHHHHh---------------------
Confidence            444555556666677766654433222           235567777777666554332                     


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                        +.+..+....+.+.+.....|.....+.+..|++.|+..+|+......+|..+++.+..++.
T Consensus        95 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~  156 (395)
T PRK10054         95 --NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV  156 (395)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              12223334567777777778888889999999999999999999998999999888887654

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.54  E-value=0.0066  Score=51.38  Aligned_cols=61  Identities=16%  Similarity=0.245  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      .++.....++.+++.-...+.....+.+..|++.|+..+|++.....+|..+++.+.....
T Consensus        51 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  111 (141)
T TIGR00880        51 ITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLA  111 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh
Confidence            3445556789999999999999999999999999999999999999999999988877654

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.52  E-value=0.054  Score=56.20  Aligned_cols=91  Identities=14%  Similarity=0.239  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHH-HhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCch
Q 011824          348 LIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAAL-AGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGR  426 (476)
Q Consensus       348 ip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l-~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~  426 (476)
                      +...+++|+.-.+..+++..++.+.+|++.|+..||++.. ..++|..+|..+.+.+...-+      .+..      -.
T Consensus       305 ~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g------~~~~------~~  372 (400)
T PF03825_consen  305 LLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG------ARGM------FD  372 (400)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc------chhh------hh
Confidence            3334689999999999999999999999999999999775 567888887777766543110      0000      01


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhc
Q 011824          427 FDYLYWLLAVLSVINFCAFLYSAY  450 (476)
Q Consensus       427 ~~~~f~lla~l~~~~~~~~~~~~~  450 (476)
                      ...+|.+.+++.++..+++++.-|
T Consensus       373 ~~~~~~v~a~~~~~~~~~f~~~fk  396 (400)
T PF03825_consen  373 WSAVFLVFAVMALVILVLFVILFK  396 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcc
Confidence            123566777777777777776644

>PRK11663 regulatory protein UhpC; Provisional

Probab=97.52  E-value=0.0054  Score=64.11  Aligned_cols=109  Identities=13%  Similarity=-0.011  Sum_probs=75.4

Q ss_pred             ccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcc
Q 011824          262 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD  341 (476)
Q Consensus       262 ~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  341 (476)
                      +.+...+...+..|+..++    .+|.+       +.+-+.+|+++.+++.+..+..                       
T Consensus        63 ~~~~~~~~~~~~~~~~G~l----~dr~g-------~r~~~~~~~~~~~~~~~~~~~~-----------------------  108 (434)
T PRK11663         63 LATLFYITYGVSKFVSGIV----SDRSN-------ARYFMGIGLIATGIINILFGFS-----------------------  108 (434)
T ss_pred             HHHHHHHHHHHHHhhhhHH----HhhcC-------CchhHHHHHHHHHHHHHHHHHH-----------------------
Confidence            3344445555555555544    34432       1123567777777666544332                       


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      -+.+.++...++.++++-...+.....+.+..|++.||..+|++.....+|..+++.+...+.
T Consensus       109 ~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~  171 (434)
T PRK11663        109 SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIA  171 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            123334455677889998888999999999999999999999999999999999988777654

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=97.51  E-value=0.023  Score=58.18  Aligned_cols=86  Identities=16%  Similarity=0.261  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc---hhHHHHH
Q 011824           30 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGA  106 (476)
Q Consensus        30 ~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g---~~~~F~i  106 (476)
                      +.+++.-.++++|-|.| ..-.+..+..|++++      +..+..++= ..|+|..+..++.|.+....|   |+.+-.+
T Consensus       106 ~~ll~~gll~G~~GasF-av~m~~~s~~fP~~~------qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i  177 (417)
T COG2223         106 WQLLVIGLLLGLAGASF-AVGMPNASFFFPKEK------QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGI  177 (417)
T ss_pred             HHHHHHHHHHhccccee-hcccccccccCChhh------hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            34444445566666665 445566788898754      566777777 899999999999999988888   9999999


Q ss_pred             HHHHHHHHHHHHHhhcc
Q 011824          107 LAIAMGISNMLFFIGTP  123 (476)
Q Consensus       107 ~~~~~~i~~i~f~~~~~  123 (476)
                      ..+.++++.+.+++..+
T Consensus       178 ~~~~l~v~~v~~~~~~~  194 (417)
T COG2223         178 YVVALAIAAVLAWLGMN  194 (417)
T ss_pred             HHHHHHHHHHHHHHHhC
Confidence            99999998888887644

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=97.51  E-value=0.0096  Score=63.47  Aligned_cols=111  Identities=13%  Similarity=0.095  Sum_probs=81.5

Q ss_pred             CcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 011824          260 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM  339 (476)
Q Consensus       260 ~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  339 (476)
                      .|..+...+...++.|+..++..+..||           +-+.+|.++.+++.+..+..                     
T Consensus        44 ~~~~~~~~l~~~~~~~~~G~l~D~~Grk-----------~~l~~~~~~~~~~~~~~~~a---------------------   91 (495)
T PRK14995         44 LWIIDIYSLVMAGMVLPMGALGDRIGFK-----------RLLMLGGTLFGLASLAAAFS---------------------   91 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHHc---------------------
Confidence            3555555666667777776665444333           23667777777776665432                     


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          340 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEE-APDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       340 ~~~s~~wlip~~~l~~igEll~~p~~lef~~~~-aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                        -+.++++...+++|+|.....|.....+.+. .|++.|+..+|++.....+|..+|+.+.+++.
T Consensus        92 --~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~  155 (495)
T PRK14995         92 --PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILL  155 (495)
T ss_pred             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence              2355567778999999999999888888666 58899999999999999999999999887764

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.46  E-value=0.011  Score=60.68  Aligned_cols=108  Identities=10%  Similarity=0.081  Sum_probs=72.2

Q ss_pred             ccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcc
Q 011824          262 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD  341 (476)
Q Consensus       262 ~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  341 (476)
                      +.++..+...+..|+..++..+..+|           +-+.++.++.+++.+..+..                       
T Consensus        59 ~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~-----------------------  104 (408)
T PRK09874         59 VFSITFLFSAIASPFWGGLADRKGRK-----------IMLLRSALGMGIVMVLMGLA-----------------------  104 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhCcH-----------HHHHHHHHHHHHHHHHHHHH-----------------------
Confidence            44455556666677766654433222           12445555555555443321                       


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      .+.++++...++.+++..+ .+.....+.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus       105 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  166 (408)
T PRK09874        105 QNIWQFLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLA  166 (408)
T ss_pred             hhHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2355566677888888664 4677788889999999999999999988888888888877543

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.44  E-value=0.0057  Score=63.59  Aligned_cols=62  Identities=11%  Similarity=-0.074  Sum_probs=51.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          343 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       343 s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      +.++++..-+++|+++.+..+.....+.+.-|++.++..+|++.....+|..+|+.+.....
T Consensus       103 ~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~  164 (413)
T PRK15403        103 SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALM  164 (413)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666777899999998877777777778889999999999999998899888888776543

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.44  E-value=0.0091  Score=60.35  Aligned_cols=56  Identities=11%  Similarity=0.163  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824          348 LIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  403 (476)
Q Consensus       348 ip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~  403 (476)
                      .....+-+++-....+....++.+..|++.||..+|+.....+++..+|+++.+..
T Consensus       356 ~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i  411 (451)
T KOG2615|consen  356 YLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVI  411 (451)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhhee
Confidence            34567888899999999999999999999999999999999999999999988543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=97.42  E-value=0.0079  Score=61.70  Aligned_cols=138  Identities=18%  Similarity=0.112  Sum_probs=103.4

Q ss_pred             CcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCC
Q 011824          260 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGI-GLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTA  338 (476)
Q Consensus       260 ~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~i-G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~  338 (476)
                      .++.++-.+.+.+..|++..+-.++-||            |.-+ .+.+..++=+..++.                    
T Consensus        51 G~lis~yAl~~ai~ap~l~~lt~r~~Rr------------~lLl~~l~lFi~~n~l~alA--------------------   98 (394)
T COG2814          51 GQLITAYALGVALGAPLLALLTGRLERR------------RLLLGLLALFIVSNLLSALA--------------------   98 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccchH------------HHHHHHHHHHHHHHHHHHHh--------------------
Confidence            3677888899999999987765444333            3333 333444444443332                    


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcc
Q 011824          339 MPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWL  418 (476)
Q Consensus       339 ~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~  418 (476)
                         .|.+.++..-++.+++--...+.+...+.+.+|++.|+..+|+.+....++..+|..++.++...-        +| 
T Consensus        99 ---p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~--------GW-  166 (394)
T COG2814          99 ---PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF--------GW-  166 (394)
T ss_pred             ---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh--------hH-
Confidence               456777888899999999999999999999999999999999999999999999988888776433        25 


Q ss_pred             cccCcCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 011824          419 AQNINTGRFDYLYWLLAVLSVINFCAFLYSAY  450 (476)
Q Consensus       419 ~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~  450 (476)
                               -.-|+.+++++++..+..+...+
T Consensus       167 ---------R~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         167 ---------RATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHHhCC
Confidence                     23677788888887777776666

>TIGR00895 2A0115 benzoate transport

Probab=97.42  E-value=0.0014  Score=66.58  Aligned_cols=61  Identities=18%  Similarity=0.141  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      .++++...++.+++.-...+.....+.+..|++.|+..+|+......+|..+++.+...+.
T Consensus       105 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  165 (398)
T TIGR00895       105 VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI  165 (398)
T ss_pred             hHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHh
Confidence            4455667889999999999999999999999999999999999999999999988876543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=97.42  E-value=0.0092  Score=61.71  Aligned_cols=81  Identities=10%  Similarity=0.086  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHH
Q 011824          301 VGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSI  380 (476)
Q Consensus       301 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~  380 (476)
                      +.+|.++.+++++.....                       -+.++++...++.++++.+..|.....+.+.+|++.++.
T Consensus        79 l~~~~~~~~~~~~~~~~~-----------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~  135 (400)
T PRK11646         79 IVTGMLMRAAGFATMAIA-----------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGR  135 (400)
T ss_pred             HHHHHHHHHHHHHHHHHh-----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            556777777766654322                       235667777899999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          381 GSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       381 ~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      .+|+......+|..+|+.+.+...
T Consensus       136 a~~~~~~~~~~g~~ig~~l~g~l~  159 (400)
T PRK11646        136 FFSLLMMQDSAGAVIGALLGSWLL  159 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988887654

>PRK03633 putative MFS family transporter protein; Provisional

Probab=97.36  E-value=0.016  Score=59.33  Aligned_cols=109  Identities=11%  Similarity=-0.058  Sum_probs=79.9

Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824          261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  340 (476)
Q Consensus       261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  340 (476)
                      +..+...+...+..|+..++..+..+|           +-+.+|.++.++++...+..                      
T Consensus        45 ~~~s~~~l~~~~~~~~~g~l~dr~g~k-----------~~~~~~~~~~~~~~~~~~~~----------------------   91 (381)
T PRK03633         45 VVSSSYFTGNLVGTLLAGYVIKRIGFN-----------RSYYLASLIFAAGCAGLGLM----------------------   91 (381)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHh----------------------
Confidence            455555666666667666655444333           23567777777776654432                      


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824          341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  403 (476)
Q Consensus       341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~  403 (476)
                       -+.++++...++.|++.....|.....+.+..|++.|+..+|.+.....+|..+|+.+....
T Consensus        92 -~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l  153 (381)
T PRK03633         92 -VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKV  153 (381)
T ss_pred             -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence             23455666789999999999999888888999999999999999999999999998887654

>PRK03699 putative transporter; Provisional

Probab=97.36  E-value=0.016  Score=59.64  Aligned_cols=108  Identities=11%  Similarity=0.041  Sum_probs=74.2

Q ss_pred             ccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcc
Q 011824          262 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD  341 (476)
Q Consensus       262 ~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  341 (476)
                      ..+...+..++..++..++..++.+|           +-+.++.++.+++.+..++.                       
T Consensus        47 ~~s~~~~~~~i~~~~~g~l~dr~g~r-----------~~~~~~~~~~~i~~~l~~~~-----------------------   92 (394)
T PRK03699         47 TFTFLNAGILISIFLNAWLMEIIPLK-----------RQLIFGFALMILAVAGLMFS-----------------------   92 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHH-----------HHHHHHHHHHHHHHHHHHHc-----------------------
Confidence            34445555556666655554443332           23555666666665544322                       


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824          342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  403 (476)
Q Consensus       342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~  403 (476)
                      -+.++++...++.++++....+.....+.+..|++.|+..+++.....++|..+++.+...+
T Consensus        93 ~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  154 (394)
T PRK03699         93 HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYL  154 (394)
T ss_pred             chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23455566778999999999998999999999999999999998888888888888776543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.36  E-value=0.0022  Score=66.55  Aligned_cols=109  Identities=18%  Similarity=0.112  Sum_probs=78.3

Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824          261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  340 (476)
Q Consensus       261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  340 (476)
                      ++.++..+...+..|+..++..++.||           +-+.+|.++.+++.+..+....                   .
T Consensus        75 ~~~~~~~~~~~i~~~~~g~l~d~~grr-----------~~~~~~~~~~~~~~~~~~~~~~-------------------~  124 (481)
T TIGR00879        75 LVVSIFLVGGFIGALFAGWLSDRFGRK-----------KSLLIIALLFVIGAILMGLAAF-------------------A  124 (481)
T ss_pred             HHHHHHHHHHHHHHHHhhHhhhhhhhH-----------HHHHHHHHHHHHHHHHHHHhcc-------------------c
Confidence            344555555566666666654433222           2355666666666555543321                   1


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHH
Q 011824          341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILN  400 (476)
Q Consensus       341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~  400 (476)
                       .+.++++...++.|+|+....+....++.+..|++.|+..+|++.....+|..+++.+.
T Consensus       125 -~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       125 -LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             -cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence             23445667789999999999999999999999999999999999999999999999887

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=97.34  E-value=0.0006  Score=70.10  Aligned_cols=94  Identities=14%  Similarity=0.079  Sum_probs=73.6

Q ss_pred             hHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Q 011824           29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA  108 (476)
Q Consensus        29 ~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~~  108 (476)
                      ...++++..+.++|.+..-|.......|.++++      ++.+++.+++...++|..+++.+.+++.+..||+..|.+.+
T Consensus       302 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~  375 (399)
T PRK05122        302 PWMALIGAALTGFGFSLVFPALGVEAVKRVPPQ------NRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAA  375 (399)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            344566677788888888888777777766532      37889999999999999999999999998899999999988


Q ss_pred             HHHHHHHHHHHhhccceeec
Q 011824          109 IAMGISNMLFFIGTPLYRHR  128 (476)
Q Consensus       109 ~~~~i~~i~f~~~~~~~~~~  128 (476)
                      +..+++++.....+++.+++
T Consensus       376 ~~~~~~~~~~~~~~~~~~~~  395 (399)
T PRK05122        376 LAALLGLALTWLLYRRAPRA  395 (399)
T ss_pred             HHHHHHHHHHHHhccccccc
Confidence            88888877766555544443

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.34  E-value=0.011  Score=61.19  Aligned_cols=109  Identities=12%  Similarity=0.066  Sum_probs=79.2

Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824          261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  340 (476)
Q Consensus       261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  340 (476)
                      +..++..+...+..|+..++.    +|.+       ..+-+.+|.++.+++.+..++.                      
T Consensus        57 ~~~~~~~~~~~l~~~~~g~l~----dr~g-------~r~~l~~~~~~~~~~~~~~~~~----------------------  103 (426)
T PRK12307         57 FLATAAFIGRPFGGALFGLLA----DKFG-------RKPLMMWSIVAYSVGTGLSGLA----------------------  103 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHhC-------ChHHHHHHHHHHHHHHHHHHHH----------------------
Confidence            345555566666666655554    4432       1223556777777766554433                      


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824          341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  403 (476)
Q Consensus       341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~  403 (476)
                       .+.++++...++.|+++-...+....++.+..|++.|+..+|++....++|..+++.+...+
T Consensus       104 -~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l  165 (426)
T PRK12307        104 -SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSF  165 (426)
T ss_pred             -hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHH
Confidence             23455667788999999999999999999999999999999999999999999988776544

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.34  E-value=0.0016  Score=65.52  Aligned_cols=107  Identities=10%  Similarity=-0.053  Sum_probs=75.9

Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824          261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  340 (476)
Q Consensus       261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  340 (476)
                      ++.++..+...+..|+..++..+..+|           +-+.+|.++.+++.+..+..                      
T Consensus        34 ~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~----------------------   80 (379)
T TIGR00881        34 LLLSSFSIAYGISKFVMGSVSDRSNPR-----------VFLPIGLILCAIVNLFFGFS----------------------   80 (379)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHhhCCe-----------ehhHHHHHHHHHHHHHHHHh----------------------
Confidence            344555556666666655554333222           23566777777666655433                      


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHH-HHH
Q 011824          341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASI-LNS  401 (476)
Q Consensus       341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~-l~~  401 (476)
                       .+.++++...++.+++.-+..|.....+.+..|++.|+..+|++.....+|..+++. +..
T Consensus        81 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  141 (379)
T TIGR00881        81 -TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLF  141 (379)
T ss_pred             -hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHH
Confidence             234555667789999999999999999999999999999999999999999999883 443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.34  E-value=0.003  Score=66.36  Aligned_cols=112  Identities=14%  Similarity=0.297  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH
Q 011824          300 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKS  379 (476)
Q Consensus       300 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg  379 (476)
                      -|.+|+.+.++=++....+                       -++|..+|--+++++.-.++..+..+++...||++++.
T Consensus       438 v~~lgLa~~~~Rf~~~S~L-----------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~a  494 (618)
T KOG3762|consen  438 VMYLGLACNVGRFLYYSYL-----------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRA  494 (618)
T ss_pred             eeeehhhHHHHHHHHHHHh-----------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchH
Confidence            4667777766666554433                       23465678789999999999999999999999999999


Q ss_pred             HHHHHHH-----HHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 011824          380 IGSAYAA-----LAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY  454 (476)
Q Consensus       380 ~~~gl~~-----l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~  454 (476)
                      .++|+.-     +.-++|+++||.++..+..                      --.|+..++.+++..+++..+.+..++
T Consensus       495 t~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~----------------------~ttf~~~giAcl~~l~~~~~iq~~l~~  552 (618)
T KOG3762|consen  495 TAQGLLQGIFHGLGKGLGSLIGGFVVERFGA----------------------RTTFRIFGIACLVTLALFISIQLLLKR  552 (618)
T ss_pred             HHHHHHHHHhcccCcchhhhhhhhhheeehh----------------------HHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            9887654     3445666666655432211                      126677777787777777777776666


Q ss_pred             cc
Q 011824          455 RS  456 (476)
Q Consensus       455 ~~  456 (476)
                      +.
T Consensus       553 ~~  554 (618)
T KOG3762|consen  553 RG  554 (618)
T ss_pred             cc
Confidence            53

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=97.33  E-value=0.0071  Score=61.39  Aligned_cols=108  Identities=14%  Similarity=0.044  Sum_probs=75.3

Q ss_pred             cchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcch
Q 011824          263 PVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDL  342 (476)
Q Consensus       263 ~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  342 (476)
                      .++..+...+..|+...+    .+|.+       ..+-+.+|.++.+++.+.....                       .
T Consensus        32 ~~~~~~~~~~~~~~~g~l----~d~~g-------~~~~~~~~~~~~~i~~~~~~~~-----------------------~   77 (377)
T PRK11102         32 LSAYILGFAIGQLFYGPM----ADSFG-------RKPVILGGTLVFALAAVACALA-----------------------Q   77 (377)
T ss_pred             HHHHHHHHHHHHHhhchH----HhhcC-------ChHHHHHHHHHHHHHHHHHHHH-----------------------c
Confidence            344445555555554444    34421       2224566777777666554432                       1


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          343 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       343 s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      +.+.++...++.+++.....+.....+.+..|++.|+..+|++.....+|..+++.+.....
T Consensus        78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  139 (377)
T PRK11102         78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLL  139 (377)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23444556788999999999999999999999999999999999999999999888876544

>PRK10504 putative transporter; Provisional

Probab=97.32  E-value=0.017  Score=60.73  Aligned_cols=61  Identities=15%  Similarity=0.183  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      .++++...+++|++.-...|.....+.+..|++.++..+|+......+|..+++.+.+.+.
T Consensus        98 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~  158 (471)
T PRK10504         98 LNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV  158 (471)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            4455667899999999999999999999999999999999999888888888888876654

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.30  E-value=0.0012  Score=67.01  Aligned_cols=146  Identities=16%  Similarity=0.149  Sum_probs=111.6

Q ss_pred             CcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 011824          260 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM  339 (476)
Q Consensus       260 ~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  339 (476)
                      +++.+.-++.-++.-|++..+..+...|        -   -|.+|++++.++-++.++.+.                   
T Consensus       109 G~LFaskA~~qllvnp~~G~l~~~iGy~--------i---pm~~Gl~vmf~sTilFafg~s-------------------  158 (464)
T KOG3764|consen  109 GLLFASKALVQLLVNPFFGNLIDRIGYK--------I---PMVAGLFVMFLSTILFAFGNS-------------------  158 (464)
T ss_pred             hHHHHHHHHHHHHhcccchhhHHHhccc--------c---HHHHHHHHHHHHHHHHHHcch-------------------
Confidence            3444555566666667666554433222        1   378999999888888776643                   


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh-HHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcc
Q 011824          340 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM-KSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWL  418 (476)
Q Consensus       340 ~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~-kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~  418 (476)
                          +..++.+-.++|+|..+.+..|++.+.+.-|++. ||..||.-.-..++|..+|+.+++.++..-+     .    
T Consensus       159 ----y~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-----k----  225 (464)
T KOG3764|consen  159 ----YPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-----K----  225 (464)
T ss_pred             ----hHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC-----C----
Confidence                3456778999999999999999999999999987 5999999999999999999999988775332     0    


Q ss_pred             cccCcCchhHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011824          419 AQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSE  457 (476)
Q Consensus       419 ~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~~~~  457 (476)
                               .-=|.+++.++++...+-+++-+.++..++
T Consensus       226 ---------~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~  255 (464)
T KOG3764|consen  226 ---------SAPFLVLAIVLLLDGALQLLVIEPTEMDPD  255 (464)
T ss_pred             ---------cCcHHHHHHHHHHHHHHHHheeCccccCcc
Confidence                     124788999999999998888888776553

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.28  E-value=0.16  Score=51.37  Aligned_cols=86  Identities=22%  Similarity=0.352  Sum_probs=69.8

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGA  106 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~-g~~~~F~i  106 (476)
                      +...++.|..++++|.+....-+.+++-+-|+++       .......|-.+.++|+.+++.+++.+.++. ||+.+...
T Consensus        98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~  170 (395)
T COG2807          98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGF  170 (395)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHH
Confidence            5677889999999999988888888888888753       455677899999999999999999888777 79998887


Q ss_pred             HHHHHHHHHHHHHh
Q 011824          107 LAIAMGISNMLFFI  120 (476)
Q Consensus       107 ~~~~~~i~~i~f~~  120 (476)
                      =+..-++++++.+-
T Consensus       171 WAl~allAl~~WlP  184 (395)
T COG2807         171 WALLALLALLIWLP  184 (395)
T ss_pred             HHHHHHHHHHHHhh
Confidence            77666666666554

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=97.28  E-value=0.0084  Score=61.78  Aligned_cols=108  Identities=10%  Similarity=0.016  Sum_probs=78.6

Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824          261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  340 (476)
Q Consensus       261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  340 (476)
                      ++.+...+...+..|+..++..++.+|           +-+.+|+++.+++.+..++.+                     
T Consensus        48 ~~~s~~~~~~~l~~~~~g~l~dr~G~r-----------~~l~~~~~l~~~~~~~~~~a~---------------------   95 (393)
T PRK09705         48 LLTALPVVTMGGLALAGSWLHQHVSER-----------RSVAISLLLIAVGALMRELYP---------------------   95 (393)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHCc---------------------
Confidence            455555666666677766654443332           246788888888887765432                     


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824          341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  403 (476)
Q Consensus       341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~  403 (476)
                        +.++++..-++.|+|+....+...+.+.+..| +.|+..+|++......|..+++.+....
T Consensus        96 --~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l  155 (393)
T PRK09705         96 --QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWL  155 (393)
T ss_pred             --chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence              23445667799999999999999999988887 6799999999988888888888777654

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.27  E-value=0.0022  Score=70.56  Aligned_cols=133  Identities=13%  Similarity=0.030  Sum_probs=86.7

Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhh--h-------h----
Q 011824          261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNY--A-------I----  327 (476)
Q Consensus       261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~--~-------~----  327 (476)
                      ++.+.+.+.-.+..++..++    ..|.       ...+-+++|+++.+++.+..++.+......  .       +    
T Consensus        72 ~i~s~~~i~~~~~~i~v~~~----~~r~-------~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~  140 (633)
T TIGR00805        72 LINGSYEIGNLLLIIFVSYF----GTKL-------HRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSA  140 (633)
T ss_pred             eeeehhhHHHHHHHHHHHHh----hccc-------CcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccccc
Confidence            45555556666665555443    3442       223358899999999988887765321000  0       0    


Q ss_pred             -hcCCc-c------------cccCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHH
Q 011824          328 -SHGYE-F------------SFLTAMP-DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLG  392 (476)
Q Consensus       328 -~~g~~-~------------~~~~~~~-~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g  392 (476)
                       +.-+. .            ....... +.....++..-+++|+|+....+.+..++.+..|++.++.++|++.....+|
T Consensus       141 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG  220 (633)
T TIGR00805       141 NSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFG  220 (633)
T ss_pred             ccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhh
Confidence             00000 0            0000000 0223445567799999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 011824          393 CFAASILNSIIK  404 (476)
Q Consensus       393 ~~l~~~l~~~~~  404 (476)
                      ..+|..+++.+.
T Consensus       221 ~~lG~llgg~l~  232 (633)
T TIGR00805       221 PAFGYLLGSFCL  232 (633)
T ss_pred             hHHHHHHHHHHH
Confidence            999988877654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.26  E-value=0.023  Score=59.13  Aligned_cols=114  Identities=9%  Similarity=0.027  Sum_probs=82.1

Q ss_pred             CcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 011824          260 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM  339 (476)
Q Consensus       260 ~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  339 (476)
                      +++.+...+..++..|+..++..++.+|           +-+.+|+++.+++.+.......                   
T Consensus        41 g~l~s~~~~g~~i~~~~~g~l~~r~G~r-----------~~~~~g~~l~~~g~~l~~~~~~-------------------   90 (410)
T TIGR00885        41 ALVQSAFYGGYFIMAIPAAIFMKKLSYK-----------AGILLGLFLYALGAFLFWPAAE-------------------   90 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence            3455666667777777766554333222           2467788887777655432211                   


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          340 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       340 ~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      . .+.++++...++.|+|.-+..+....++.+.+|++.++..+++.....++|..+++.+...+.
T Consensus        91 ~-~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885        91 I-MNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             h-ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0 245556667789999999999999999999999999999999999999999999988877553

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.23  E-value=0.086  Score=57.23  Aligned_cols=92  Identities=14%  Similarity=0.132  Sum_probs=58.8

Q ss_pred             ccCccchhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 011824           22 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWG  101 (476)
Q Consensus        22 ~~~~~~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~  101 (476)
                      ..++..+...+..|..+.++|.|... .....++|..+.+.      |..++.+..+..=+...+++.++..+..+.+|+
T Consensus       124 v~atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WR  196 (599)
T PF06609_consen  124 VCATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAAHSGWR  196 (599)
T ss_pred             HhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhccCCCcc
Confidence            34455677889999999999988875 44556788886532      322332333222222333455554455567999


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 011824          102 SAFGALAIAMGISNMLFFI  120 (476)
Q Consensus       102 ~~F~i~~~~~~i~~i~f~~  120 (476)
                      +.|++.++...++++...+
T Consensus       197 w~~~~~~i~~~i~~vl~~~  215 (599)
T PF06609_consen  197 WIFYIFIIWSGIALVLIFF  215 (599)
T ss_pred             hHHHHHHHHHHHHHHHHHH
Confidence            9999999887777765544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.22  E-value=0.0012  Score=56.06  Aligned_cols=86  Identities=20%  Similarity=0.245  Sum_probs=71.5

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  107 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~  107 (476)
                      +...+.+...+.+++.+...+...+...|.+++++      |....++++...++|..+++.+.+++.+..+|+..|.+.
T Consensus        50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  123 (141)
T TIGR00880        50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFL  123 (141)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHH
Confidence            45566677788899999999999999999987643      678889999999999999999999998889999999988


Q ss_pred             HHHHHHHHHHHH
Q 011824          108 AIAMGISNMLFF  119 (476)
Q Consensus       108 ~~~~~i~~i~f~  119 (476)
                      ++..+++.+...
T Consensus       124 ~~~~~~~~~~~~  135 (141)
T TIGR00880       124 AILALAAFILLA  135 (141)
T ss_pred             HHHHHHHHHHHh
Confidence            877666655544

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.22  E-value=0.029  Score=62.74  Aligned_cols=109  Identities=14%  Similarity=0.072  Sum_probs=76.0

Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824          261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  340 (476)
Q Consensus       261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  340 (476)
                      ++.++..+..++..++..++..++.||           +-+.+++++.+++.+..++.                      
T Consensus       206 ~l~s~~~lG~iiG~li~G~LsDR~GRR-----------~~lii~lil~~i~~ll~afa----------------------  252 (742)
T TIGR01299       206 MLGLIVYLGMMVGAFFWGGLADKLGRK-----------QCLLICLSVNGFFAFFSSFV----------------------  252 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHH----------------------
Confidence            445555566666666655554333222           23455655555544443322                      


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824          341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  403 (476)
Q Consensus       341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~  403 (476)
                       .+.++++...++.|++.-...|....++.+..|++.||..++++....++|..+++.+...+
T Consensus       253 -~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~i  314 (742)
T TIGR01299       253 -QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAI  314 (742)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             23455667789999999999999999999999999999999999999999988888766543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=97.16  E-value=0.0036  Score=66.08  Aligned_cols=87  Identities=13%  Similarity=-0.007  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhH
Q 011824          299 QRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK  378 (476)
Q Consensus       299 ~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~k  378 (476)
                      +-+.+++++.+++....+....                 ... .+.+.++...++.|++|-...|.....+.+..|++.|
T Consensus        95 ~~l~~~~~~~~~~~~~~~~~~~-----------------~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r  156 (467)
T PRK09556         95 QFLPFLLILSAICMLGFGASLG-----------------SGS-VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKR  156 (467)
T ss_pred             chHHHHHHHHHHHHHHHHHHHh-----------------ccc-chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccce
Confidence            3466777777666655443311                 001 3455667778999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824          379 SIGSAYAALAGGLGCFAASILNSII  403 (476)
Q Consensus       379 g~~~gl~~l~~a~g~~l~~~l~~~~  403 (476)
                      |..+|++.....+|..+++.+....
T Consensus       157 g~a~gi~~~~~~lG~~l~~~i~~~~  181 (467)
T PRK09556        157 GRFLGFWNISHNLGGAGAGGVALWG  181 (467)
T ss_pred             eeeEEeeecccchhhhHHHHHHHHH
Confidence            9999999999999999998877543

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.16  E-value=0.0045  Score=65.15  Aligned_cols=61  Identities=13%  Similarity=0.047  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      .++++..-+++|++|-...|.....+.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus       131 ~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~  191 (465)
T TIGR00894       131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLC  191 (465)
T ss_pred             chHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777899999999999999999999999999999999999999999999998887654

>PRK10489 enterobactin exporter EntS; Provisional

Probab=97.14  E-value=0.01  Score=61.42  Aligned_cols=116  Identities=13%  Similarity=0.008  Sum_probs=78.0

Q ss_pred             CcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 011824          260 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM  339 (476)
Q Consensus       260 ~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  339 (476)
                      ++..+...+..++..|+..++..++-+|           +-+.++.++.+++++..++....                . 
T Consensus        55 g~~~~~~~l~~~~~~~~~G~l~dr~g~~-----------~~l~~~~~~~~~~~~~~~~~~~~----------------~-  106 (417)
T PRK10489         55 GLSVTLTGGAMFIGLMVGGVLADRYDRK-----------KLILLARGTCGLGFIGLALNAFL----------------P-  106 (417)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHhhhcCCc-----------eEEEehHHHHHHHHHHHHHHHHc----------------C-
Confidence            3455556666666667666554443222           12344566666665544332110                0 


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          340 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       340 ~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      . .+.++++...++.+++.-+..+.....+.+..|++.++...+++.....+|..+|+.+.+.+.
T Consensus       107 ~-~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~  170 (417)
T PRK10489        107 E-PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI  170 (417)
T ss_pred             C-CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence            1 235556667788899999999999999999999999999999998888888888888776543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=97.14  E-value=0.018  Score=57.76  Aligned_cols=107  Identities=17%  Similarity=0.050  Sum_probs=73.0

Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824          261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  340 (476)
Q Consensus       261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  340 (476)
                      +..++..+...+..|+...+..+..||           +-+.+|.++.+++.+..+...                     
T Consensus        42 ~~~s~~~~~~~~~~~~~G~l~d~~G~r-----------~~~~~~~~~~~~~~~~~~~~~---------------------   89 (377)
T TIGR00890        42 IWFTLLLIGLAMSMPVGGLLADKFGPR-----------AVAMLGGILYGLGFTFYAIAD---------------------   89 (377)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHcCcc-----------chhHHhHHHHHHHHHHHHHHH---------------------
Confidence            445555666666667666654433222           125567777777765554332                     


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 011824          341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI  402 (476)
Q Consensus       341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~  402 (476)
                        +.+.++...++.++++-...+.....+.+..|+ .|+..++++....++|..+++.+...
T Consensus        90 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~  148 (377)
T TIGR00890        90 --SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-KRGLASGIIIGGYGLGSFILSPLITS  148 (377)
T ss_pred             --HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-ccHHHHHHHHHhcchhHhHHHHHHHH
Confidence              234455566799999998888888888888885 59999999999999998876666544

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.13  E-value=0.05  Score=54.75  Aligned_cols=108  Identities=19%  Similarity=0.166  Sum_probs=71.7

Q ss_pred             CcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 011824          260 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM  339 (476)
Q Consensus       260 ~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  339 (476)
                      +++.++..+...+..|+..++..+..+|           +-+.+|.++.+++.+..+...                    
T Consensus        40 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~i~~~~~~~~~--------------------   88 (366)
T TIGR00886        40 GNLVAVPVLAGAVLRIILGFLVDKFGPR-----------YTTTLSLLLLAIPCLWAGLAV--------------------   88 (366)
T ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHHh--------------------
Confidence            4556666666677777766654433222           236677777777766554332                    


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHH
Q 011824          340 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNS  401 (476)
Q Consensus       340 ~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~  401 (476)
                        .+.++++...++.+++.... +.....+.+..|++.|+..++++.....+|..+++.+..
T Consensus        89 --~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~  147 (366)
T TIGR00886        89 --QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMP  147 (366)
T ss_pred             --hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence              13455666778889987655 556789999999999999999988666666655555543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.10  E-value=0.044  Score=56.44  Aligned_cols=61  Identities=15%  Similarity=-0.007  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      .++++...++.+++..+..+.....+.+..|++.++..+++......+|..+++.+.....
T Consensus       101 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~  161 (406)
T PRK15402        101 IEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALI  161 (406)
T ss_pred             HHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566788899999988999999999999999988888887777777777777766543

>PRK03893 putative sialic acid transporter; Provisional

Probab=97.07  E-value=0.045  Score=57.88  Aligned_cols=61  Identities=16%  Similarity=0.218  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      .++++...++.|++.....+.....+.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus       108 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  168 (496)
T PRK03893        108 YWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV  168 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4556677899999999999999999999999999999999999999999999998887654

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.07  E-value=0.0086  Score=63.58  Aligned_cols=113  Identities=13%  Similarity=0.123  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh--
Q 011824          300 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM--  377 (476)
Q Consensus       300 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~--  377 (476)
                      -+.+|.++.+++.+..++.                       .+.++++...++.++|+-+..|....++.++.|++.  
T Consensus        81 ~l~~~~~~~~~g~~~~~~~-----------------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~  137 (475)
T TIGR00924        81 TMVLGGIVLMLGHFMLAMS-----------------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP  137 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhc-----------------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc
Confidence            3667777777776655432                       123344556678899999999999999999888753  


Q ss_pred             -HHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011824          378 -KSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK  453 (476)
Q Consensus       378 -kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~  453 (476)
                       |+...++++....+|..+|+.+...+....        +|          ..-|.+.++.++++.++++...+.++
T Consensus       138 ~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~--------g~----------~~~f~~~~~~~~~~~l~~~~~~~~~~  196 (475)
T TIGR00924       138 RRDGGFTLFYMSINIGSFISPLLAGVIAENY--------GY----------HVGFNLAAVGMVIGLLTFFAGRHMLR  196 (475)
T ss_pred             cccceehhHHHHHHHHHHHHHHHHHHHHHhc--------Ch----------HHHHHHHHHHHHHHHHHHHHcccccc
Confidence             788899999999999999998887654211        23          23555566666667777766666654

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.06  E-value=0.0017  Score=70.20  Aligned_cols=214  Identities=18%  Similarity=0.110  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Q 011824           31 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA  110 (476)
Q Consensus        31 ~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~~~~  110 (476)
                      ..|+...+...+ +..++|++++.|+++-..  -.-..+..+|..+|+.||+++++..+.            .|+++...
T Consensus        61 v~ylt~~~~~~~-~~aa~~v~~f~G~~~~~~--l~g~~laD~f~gry~tI~~~s~i~~~G------------~~~lt~~a  125 (571)
T KOG1237|consen   61 VTYLTLELHASG-GGAANNVNAFGGTQFLLP--LLGAFLADSFLGRYFTINIGSLISLLG------------LFGLTLSA  125 (571)
T ss_pred             HHHHHHHhccch-HHHHHHHHHHhhHHHHHH--HHHHHHHHHHhHHHHHHHHHHHHHHHH------------HHHHHHHH
Confidence            345555555555 888999999999999752  222447788899999999999987654            56666666


Q ss_pred             HHHHHHHHHhhccceeecC-CCCChhhHHHHHHHHHHHhhccccCCcccccccccCCCCccccCCcccccCCchhhhhHh
Q 011824          111 MGISNMLFFIGTPLYRHRL-PGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKA  189 (476)
Q Consensus       111 ~~i~~i~f~~~~~~~~~~~-p~~~pl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  189 (476)
                      ++.++..+-.   .+.... ....|-+....++..++.......                   ++.+      ..+.+.+
T Consensus       126 ~~~~l~p~~~---~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~-------------------gg~r------~~~~~fG  177 (571)
T KOG1237|consen  126 MIPALLPFMC---KFKPGGNVCESPSKLQLAVLYGALYLIALGA-------------------GGIR------PCLLAFG  177 (571)
T ss_pred             HhhhcCCccc---cCCCCCCcccCcchHHHHHHHHHHHHheecc-------------------CCCC------Ccchhhc
Confidence            6655544332   111111 111222222223333333211100                   0000      0111121


Q ss_pred             hhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhhhccc-cccCeeecCCcccchhhH
Q 011824          190 ALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT-HMGKLKLPVTCMPVFPGL  268 (476)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~~m~~-~~~g~~ip~~~~~~in~~  268 (476)
                      +..             +++...++++.        ....+.|..++|..+.++.|+..++. +..||.+-++..+..|.+
T Consensus       178 adQ-------------fd~~~~~~~~~--------~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~l  236 (571)
T KOG1237|consen  178 ADQ-------------FDELDPVEVKG--------IPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNAL  236 (571)
T ss_pred             ccc-------------cCccCcchhhC--------cccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHH
Confidence            111             11111122221        23567899999999999999886665 456888888899999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 011824          269 SIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIF  318 (476)
Q Consensus       269 ~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~  318 (476)
                      .+++|.|......++.          +.-..+..+|.++.+++.-..+..
T Consensus       237 ai~iF~~g~~~y~~~~----------p~gsp~t~i~~Vlvaa~~k~~~~~  276 (571)
T KOG1237|consen  237 AILIFLPGFPFYRYKK----------PRGSPKTRIGQVLVAAAFKRKAVV  276 (571)
T ss_pred             HHHHHHcCceeEEeeC----------CCCCchhHHHHHHHHHHHHHhccC
Confidence            9999988755433222          222257888899988888765543

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=97.05  E-value=0.016  Score=57.27  Aligned_cols=110  Identities=17%  Similarity=0.125  Sum_probs=80.9

Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824          261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  340 (476)
Q Consensus       261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  340 (476)
                      +..+...+..++..|+..++..+..||           +-+.+|.++.+++.+.....                      
T Consensus        38 ~~~~~~~~~~~~~~~~~g~~~d~~g~r-----------~~~~~~~~~~~~~~~~~~~~----------------------   84 (352)
T cd06174          38 LIVSAFSLGYALGSLLAGYLSDRFGRR-----------RVLLLGLLLFALGSLLLAFA----------------------   84 (352)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhCCc-----------hhhHHHHHHHHHHHHHHHHh----------------------
Confidence            445555566666667766654433222           13567777777766654432                      


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                       .+.++++...++.+++.-+..+....++.+..|++.|+..+++......+|..+++.+...+.
T Consensus        85 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  147 (352)
T cd06174          85 -SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLA  147 (352)
T ss_pred             -ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence             124556677899999999999999999999999999999999999999999999998887654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.05  E-value=0.15  Score=53.91  Aligned_cols=88  Identities=13%  Similarity=0.070  Sum_probs=64.9

Q ss_pred             chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH-H-HHhhccchhHHH
Q 011824           27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV-V-YIQMEHGWGSAF  104 (476)
Q Consensus        27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~-~-~l~~~~g~~~~F  104 (476)
                      ...-++.+|..+.++..|.......-++.+.-|++-      |...=...=.++++|.+++..++ + .+++.-.|++.+
T Consensus       114 ~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~  187 (485)
T KOG0569|consen  114 PSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLL  187 (485)
T ss_pred             hhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHH
Confidence            356678999999999999999999998887766432      44444456678888888884443 3 445667899999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 011824          105 GALAIAMGISNMLFFI  120 (476)
Q Consensus       105 ~i~~~~~~i~~i~f~~  120 (476)
                      +.+.+..++.++...+
T Consensus       188 ~~~~i~~~~~l~~l~~  203 (485)
T KOG0569|consen  188 AFPLIPALLQLALLPF  203 (485)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9988877776666543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.01  E-value=0.023  Score=59.47  Aligned_cols=59  Identities=8%  Similarity=-0.082  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 011824          344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI  402 (476)
Q Consensus       344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~  402 (476)
                      .+.+....++.++++....+...+.+.+..|++.||..+|++.....+|..+++.+...
T Consensus       118 ~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~  176 (438)
T TIGR00712       118 IAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLL  176 (438)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHH
Confidence            34445567888999998889889999999999999999999999999999888776653

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK12382 putative transporter; Provisional

Probab=96.99  E-value=0.041  Score=56.36  Aligned_cols=118  Identities=11%  Similarity=-0.008  Sum_probs=79.5

Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824          261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  340 (476)
Q Consensus       261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  340 (476)
                      +..+...+...+..|+..++..++.+|           +-+.+|.++.+++.+...+....      ..        ...
T Consensus        55 ~~~s~~~~~~~i~~~~~G~l~Dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~~------~~--------~~~  109 (392)
T PRK12382         55 IAVGIQFLATVLTRGYAGRLADQYGAK-----------RSALQGMLACGLAGLAYLLAAIL------PV--------SAP  109 (392)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHhhcch-----------HHHHHHHHHHHHHHHHHHhhhcc------cc--------chh
Confidence            445566666677778877766554333           13455655555443322111100      00        001


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                       .+.++++..-++.|+++....|.....+.+..|++.|+..+|.+.....+|..+++.+..++.
T Consensus       110 -~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~  172 (392)
T PRK12382        110 -FKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH  172 (392)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence             355666777899999999999999999999999999999999998888888888888876543

>PRK11010 ampG muropeptide transporter; Validated

Probab=96.95  E-value=0.099  Score=55.73  Aligned_cols=107  Identities=14%  Similarity=0.145  Sum_probs=75.5

Q ss_pred             HHHHHHhhhhhhhcCCCCCCCchH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHH
Q 011824          276 LYYSTFVPLCRRITGHPRGASQLQ-RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLI  354 (476)
Q Consensus       276 l~~~~~~p~~~~~~~~~~~~s~l~-ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~  354 (476)
                      +...+|-|+..|.+...  ....+ -+.++.++.+++....++...                   . .+.+|+....++.
T Consensus        60 ~~~~l~gpl~Dr~~~~~--~Grrr~~ll~~~i~~~~~~~~~a~~~~-------------------~-~~l~~l~~~~~l~  117 (491)
T PRK11010         60 VFKFLWSPLMDRYTPPF--LGRRRGWLLATQLLLLVAIAAMGFLEP-------------------G-TQLRWLAALAVVI  117 (491)
T ss_pred             HHHHHHHHHHHcccccC--CCCchHHHHHHHHHHHHHHHHHHHcCC-------------------c-chHHHHHHHHHHH
Confidence            45556777777642110  01111 255666666666555544311                   1 3466777778888


Q ss_pred             HHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          355 GIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       355 ~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      +++-....+...+++.+..|++.|+...|+......+|..+++.+...+.
T Consensus       118 ~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~  167 (491)
T PRK11010        118 AFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLA  167 (491)
T ss_pred             HHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988776554

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=96.91  E-value=0.4  Score=49.14  Aligned_cols=67  Identities=16%  Similarity=0.107  Sum_probs=51.6

Q ss_pred             CccchhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011824           24 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM   96 (476)
Q Consensus        24 ~~~~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~   96 (476)
                      ++......|..+|.+++.|.|..+....+++++.-+++...+   |-   |.---..-+|++++|.+.+++-.
T Consensus        99 a~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~---rl---nl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738          99 ASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAF---RL---NLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             hhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHH---HH---HHHHHhhhhHHHHHHHHHHHHHH
Confidence            345678889999999999999999999999999998854322   22   23333456899999999888754

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=96.91  E-value=0.28  Score=52.55  Aligned_cols=92  Identities=16%  Similarity=0.173  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCch
Q 011824          347 LLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGR  426 (476)
Q Consensus       347 lip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~  426 (476)
                      ++..-++.|+..-...........+..+...-+-..|+.++..+++.++|+.+.+.+...++       +          
T Consensus       391 l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg-------~----------  453 (509)
T KOG2504|consen  391 LIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG-------N----------  453 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC-------C----------
Confidence            34445677777777777777778888888888889999999999999999998876554332       1          


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 011824          427 FDYLYWLLAVLSVINFCAFLYSAYRYKYR  455 (476)
Q Consensus       427 ~~~~f~lla~l~~~~~~~~~~~~~~y~~~  455 (476)
                      +++.|...+...+++.+.++.....++++
T Consensus       454 Y~~~f~~~g~~~~~s~~~~~~~~~~~~~~  482 (509)
T KOG2504|consen  454 YDHAFYFCGLCFLLSAVLLLILRECLKRR  482 (509)
T ss_pred             eeeehhhcChHHHHHHHHHHHhHHHHHhc
Confidence            23456667777777777776666444433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=96.91  E-value=0.047  Score=57.33  Aligned_cols=106  Identities=10%  Similarity=-0.054  Sum_probs=69.1

Q ss_pred             chhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchh
Q 011824          264 VFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLS  343 (476)
Q Consensus       264 ~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s  343 (476)
                      +...+...+..|+..++    .+|.+       ..+-+.+|.++.+++.+..++....                  . -+
T Consensus        70 ~~~~i~~~~~~~~~G~l----~Dr~g-------~k~~l~~~~~~~~i~~~~~~~~~~~------------------~-~~  119 (452)
T PRK11273         70 SGISIAYGFSKFIMGSV----SDRSN-------PRVFLPAGLILAAAVMLFMGFVPWA------------------T-SS  119 (452)
T ss_pred             HHHHHHHHHHHhhhhhh----hhccC-------CchhHHHHHHHHHHHHHHHHhhhcc------------------c-cc
Confidence            33344444555555544    44432       1123566777777776655543210                  0 23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHH
Q 011824          344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASIL  399 (476)
Q Consensus       344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l  399 (476)
                      .++++...++.++++....|.....+.+..|++.|+..+|++.....+|..+.+.+
T Consensus       120 ~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l  175 (452)
T PRK11273        120 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLL  175 (452)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            45556667889999998888877888889999999999999999888887554433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=96.87  E-value=0.02  Score=60.22  Aligned_cols=119  Identities=13%  Similarity=-0.005  Sum_probs=77.0

Q ss_pred             ccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcc
Q 011824          262 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD  341 (476)
Q Consensus       262 ~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  341 (476)
                      ..+...+...+..++..++..++.||           +-+.++.++.+++.+..+..+.....  ...        +.. 
T Consensus        60 ~~s~~~ig~~~~~~~~G~l~dr~Grr-----------~~~~~~~~l~~i~~~~~~~~~~~~~~--~~~--------~~~-  117 (479)
T PRK10077         60 CVASALIGCIIGGALGGYCSNRFGRR-----------DSLKIAAVLFFISALGSAWPEFGFTS--IGP--------DNT-  117 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHhhcccccc--ccc--------cch-
Confidence            33444455556666655554443333           13556666666665555443221000  000        001 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 011824          342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI  402 (476)
Q Consensus       342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~  402 (476)
                      ..+.+++..-++.|++.-...|....++.+..|++.||.++|++.....+|..++..+...
T Consensus       118 ~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~  178 (479)
T PRK10077        118 GYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYF  178 (479)
T ss_pred             hHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2234456677999999999999999999999999999999999999999998887766543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=96.86  E-value=0.05  Score=55.76  Aligned_cols=87  Identities=15%  Similarity=0.139  Sum_probs=64.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccC
Q 011824          343 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNI  422 (476)
Q Consensus       343 s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l  422 (476)
                      +.++++..-++.|+||-. .+.....+.+..|++.|+..++++.....+|..+++.+..++...        .+|-    
T Consensus        78 ~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~--------~gWr----  144 (368)
T TIGR00903        78 NYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA--------GGLQ----  144 (368)
T ss_pred             cHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------cchH----
Confidence            466778888999999986 456666678899999999999999999999999999888766431        1362    


Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHh
Q 011824          423 NTGRFDYLYWLLAVLSVINFCAFLYS  448 (476)
Q Consensus       423 n~~~~~~~f~lla~l~~~~~~~~~~~  448 (476)
                            ..|.+.++++++..++.+..
T Consensus       145 ------~~f~~~~~l~~~~~~~~~~~  164 (368)
T TIGR00903       145 ------LLIIPIAAVAAAGIILVLAA  164 (368)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHH
Confidence                  35566677766655544443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=96.84  E-value=0.046  Score=56.37  Aligned_cols=84  Identities=10%  Similarity=-0.038  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHH
Q 011824          301 VGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSI  380 (476)
Q Consensus       301 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~  380 (476)
                      +.++.++.++++...++...                   . .+.++++..+++.++......|...+++.+..|++.|+.
T Consensus        71 l~~~~~~~~l~~~~l~~~~~-------------------~-~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~  130 (402)
T PRK11902         71 LLLTQVGLAASIAAMAFCPP-------------------H-AALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGA  130 (402)
T ss_pred             HHHHHHHHHHHHHHHHhcCc-------------------c-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhH
Confidence            56666666666665543321                   1 345556666678888999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          381 GSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       381 ~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      +.++.....++|..+++.+...+.
T Consensus       131 ~~~~~~~g~~~g~i~g~~l~~~l~  154 (402)
T PRK11902        131 GAAVKVLGYRLAMLVSGGLALWLA  154 (402)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHH
Confidence            999999999999999988776554

>TIGR00898 2A0119 cation transport protein

Probab=96.82  E-value=0.0094  Score=63.39  Aligned_cols=108  Identities=12%  Similarity=0.016  Sum_probs=77.4

Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824          261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  340 (476)
Q Consensus       261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  340 (476)
                      +.+++..+..++..++...+-.++.||           +-+.++.++.+++.+..++.                      
T Consensus       131 ~~~s~~~~g~~~g~~~~g~l~Dr~Grr-----------~~~~~~~~~~~i~~~~~~~~----------------------  177 (505)
T TIGR00898       131 LTQSCFFVGVLLGSFVFGYLSDRFGRK-----------KVLLLSTLVTAVSGVLTAFS----------------------  177 (505)
T ss_pred             HHHHHHHHHHHHHHHhHHHhhhhccch-----------HHHHHHHHHHHHHHHHHHHc----------------------
Confidence            455666666667777766554433222           12445555555554443321                      


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 011824          341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI  402 (476)
Q Consensus       341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~  402 (476)
                       .+.++++...++.|++.-...+....++.+..|++.|+..++++....++|..+++.+..+
T Consensus       178 -~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  238 (505)
T TIGR00898       178 -PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYF  238 (505)
T ss_pred             -ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2355667788999999999999999999999999999999999999999999888877654

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=96.81  E-value=0.069  Score=56.93  Aligned_cols=61  Identities=16%  Similarity=-0.008  Sum_probs=54.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824          343 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  403 (476)
Q Consensus       343 s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~  403 (476)
                      +.++++...++.|+++-...+....++.+.+|++.||..++++.....+|..+++.+...+
T Consensus       114 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~  174 (502)
T TIGR00887       114 VMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIV  174 (502)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566777889999999999999999999999999999999999999999998888877654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PTZ00207 hypothetical protein; Provisional

Probab=96.77  E-value=0.09  Score=57.18  Aligned_cols=119  Identities=12%  Similarity=0.047  Sum_probs=82.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 011824          297 QLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA  376 (476)
Q Consensus       297 ~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~  376 (476)
                      +.+-+.+|.++.+++.+..++...         +       ... .+.+.+....++.|+|+.+..+.....+.+..| +
T Consensus        90 ~R~vllig~ll~~iG~ll~ala~~---------~-------~i~-~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~  151 (591)
T PTZ00207         90 PRPIFVLSMTVFCLGTLLFALTFQ---------E-------VIE-GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-S  151 (591)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhc---------c-------ccc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-h
Confidence            334577888888888887765421         0       011 345556667889999999999999999999887 6


Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 011824          377 MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRY  452 (476)
Q Consensus       377 ~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y  452 (476)
                      .||.++|++....++|..+.+.+...+.. .        .|          ..+++++++++++..++.+.+.+..
T Consensus       152 ~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~--------~~----------~~~fl~l~vl~~vv~ll~~~~vr~p  208 (591)
T PTZ00207        152 NRGAVVAIMKTFTGLGSAILGSIQLAFFS-D--------NT----------SAYFFFLMSFALVVGILAIVFMRLP  208 (591)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------hH----------HHHHHHHHHHHHHHHHHHHhheeCC
Confidence            78999999999999999865544432211 1        12          2466667777777666666655544

>PRK11043 putative transporter; Provisional

Probab=96.74  E-value=0.076  Score=54.52  Aligned_cols=61  Identities=15%  Similarity=0.014  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      .++++...++.|++.....+.....+.+..|++.++...+......++|..+++.+...+.
T Consensus        94 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~  154 (401)
T PRK11043         94 AAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLL  154 (401)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666788889888888888888999999998888888877777777777777766543

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=96.73  E-value=0.11  Score=53.10  Aligned_cols=61  Identities=7%  Similarity=-0.016  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      .++++...++.+++.....+...++..+..|++.++..++++.+...++..+++.+.....
T Consensus        96 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~  156 (394)
T PRK11652         96 LTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLT  156 (394)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666788899888888888889988899999999999998888888888888776544

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=96.72  E-value=0.038  Score=58.19  Aligned_cols=78  Identities=13%  Similarity=0.069  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchhHHHH
Q 011824          352 CLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLY  431 (476)
Q Consensus       352 ~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~~~~f  431 (476)
                      ++.|+++....+.....+.+..| +.|+..+|++.....+|..+++.+...+....        +|          ..-|
T Consensus       116 ~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~--------gw----------r~~f  176 (455)
T TIGR00892       116 FITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF--------GW----------RGSF  176 (455)
T ss_pred             HHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh--------Ch----------HHHH
Confidence            66788888766666777777666 68999999999999999998888776544211        24          2356


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 011824          432 WLLAVLSVINFCAFLYS  448 (476)
Q Consensus       432 ~lla~l~~~~~~~~~~~  448 (476)
                      ++.++++++..+..++.
T Consensus       177 ~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       177 LILGGLLLHCCVCGALM  193 (455)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            66677666655544433

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.59  E-value=0.053  Score=57.24  Aligned_cols=84  Identities=12%  Similarity=0.126  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH
Q 011824          300 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKS  379 (476)
Q Consensus       300 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg  379 (476)
                      -+.+|++.-.+++.+.++.+.                        -|++-...+....-....|...+++.+++.++-+|
T Consensus       310 ~i~lGl~~~~~~~~~~af~~~------------------------~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g  365 (463)
T KOG2816|consen  310 LISLGLLSEFLQLLLFAFATE------------------------TWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQG  365 (463)
T ss_pred             HhhHHHHHHHHHHHHHHHhcc------------------------chhhhHHHHHHHhhcchhHHHHhHHHhhccccccc
Confidence            467788888888877776542                        13333445555666788999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhhhcc
Q 011824          380 IGSAYAALAGGLGCFAASILNSIIKSVT  407 (476)
Q Consensus       380 ~~~gl~~l~~a~g~~l~~~l~~~~~~~~  407 (476)
                      ..+++.....++.+.+++.+.+.+...+
T Consensus       366 ~v~~~is~i~~l~~~~~~~~~~~i~~~t  393 (463)
T KOG2816|consen  366 KVFGIISGIEGLSGVVSPALYGNIFALT  393 (463)
T ss_pred             chhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            9999999999999999999988776555

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=96.58  E-value=0.063  Score=63.12  Aligned_cols=61  Identities=11%  Similarity=0.014  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      .++++...++.|++..+..|....++.+..|++.|+.++|+......+|..+|+.++.++.
T Consensus       103 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~  163 (1146)
T PRK08633        103 FWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLF  163 (1146)
T ss_pred             HHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            5666777899999999999999999999999999999999999999999999988887654

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.57  E-value=0.19  Score=51.33  Aligned_cols=89  Identities=18%  Similarity=0.170  Sum_probs=76.9

Q ss_pred             chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824           27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA  106 (476)
Q Consensus        27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i  106 (476)
                      .+.+.++++..+=++|......+-.++++|-|+++..     |.+...+---.+.+|.++||...+.+-+..|+.+.|++
T Consensus       157 ~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlV  231 (464)
T KOG3764|consen  157 NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLV  231 (464)
T ss_pred             chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHH
Confidence            3566888999999999999999999999999998653     67888888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 011824          107 LAIAMGISNMLFFI  120 (476)
Q Consensus       107 ~~~~~~i~~i~f~~  120 (476)
                      .++.+++..++-++
T Consensus       232 L~~v~Lld~~L~l~  245 (464)
T KOG3764|consen  232 LAIVLLLDGALQLL  245 (464)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99887766555433

>TIGR00806 rfc RFC reduced folate carrier

Probab=96.54  E-value=0.32  Score=51.32  Aligned_cols=60  Identities=18%  Similarity=0.328  Sum_probs=55.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824          343 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  403 (476)
Q Consensus       343 s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~  403 (476)
                      |.+.+...-++.|++|.... ....++++..|++.|+.++|++..+..+|..+++.++.+.
T Consensus       114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll  173 (511)
T TIGR00806       114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL  173 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777899999999999 9999999999999999999999999999999999999873

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.54  E-value=0.013  Score=64.20  Aligned_cols=153  Identities=11%  Similarity=0.128  Sum_probs=99.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHh----hhhhh-----hcC-------------Cc--cc-ccC---CCcchhHH-HHH
Q 011824          298 LQRVGIGLAVSILSVIWAGIFERYR----RNYAI-----SHG-------------YE--FS-FLT---AMPDLSAY-WLL  348 (476)
Q Consensus       298 l~ki~iG~~l~~ls~~~~~~~~~~~----~~~~~-----~~g-------------~~--~~-~~~---~~~~~s~~-wli  348 (476)
                      ++-|++|.++++++.++.++-+..-    .+...     +..             -.  .+ ++.   ...+..+| .++
T Consensus       162 Pr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff  241 (735)
T KOG3626|consen  162 PRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFF  241 (735)
T ss_pred             cceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHH
Confidence            4469999999999999888776541    11100     000             00  00 000   01101122 344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhc-----cCCCC--CCCCCccccc
Q 011824          349 IQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSV-----TGNPK--KGQPNWLAQN  421 (476)
Q Consensus       349 p~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~-----~~~~~--~~~~~~~~~~  421 (476)
                      ..-++.|+|+.-+.+.|.+++.+-+-++...++.|+.+....+|..+|-+++++..++     ..++.  ..||.|+   
T Consensus       242 ~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWI---  318 (735)
T KOG3626|consen  242 LGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWI---  318 (735)
T ss_pred             HHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchh---
Confidence            5679999999999999999999999999999999999988887777777776654432     11001  1256664   


Q ss_pred             CcCchhHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 011824          422 INTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRS  456 (476)
Q Consensus       422 ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~~~  456 (476)
                         |.-..-|.+.++++++..+.++.+-|.+.+..
T Consensus       319 ---GAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~  350 (735)
T KOG3626|consen  319 ---GAWWLGFLICGALLLFSAVPLFFFPKELPKSQ  350 (735)
T ss_pred             ---hHHHHHHHHHHHHHHHHHHHHHhCcccCcccc
Confidence               11122355688889999999999888887543

>PRK10133 L-fucose transporter; Provisional

Probab=96.53  E-value=0.22  Score=52.21  Aligned_cols=110  Identities=12%  Similarity=0.033  Sum_probs=75.2

Q ss_pred             ccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcc
Q 011824          262 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD  341 (476)
Q Consensus       262 ~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  341 (476)
                      +.....+...+..|+...+..++.+|           +-+.+|+++.+++.+.......                   . 
T Consensus        66 ~~~~~~~g~~i~~~~~g~l~dr~G~r-----------~~l~~g~~~~~~~~~l~~~~~~-------------------a-  114 (438)
T PRK10133         66 IQSAFYFGYFIIPIPAGILMKKLSYK-----------AGIITGLFLYALGAALFWPAAE-------------------I-  114 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHHHh-------------------c-
Confidence            44455556666666655554333222           2466777777777654321110                   0 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 011824          342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI  402 (476)
Q Consensus       342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~  402 (476)
                      .+.++++...++.|+|.-+..+....++.+.+|++.+...++++....++|..+++.+...
T Consensus       115 ~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~  175 (438)
T PRK10133        115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS  175 (438)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677788999999999999999999998888888777888888888888888777654

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=96.51  E-value=0.61  Score=48.12  Aligned_cols=87  Identities=22%  Similarity=0.332  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhH
Q 011824          299 QRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK  378 (476)
Q Consensus       299 ~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~k  378 (476)
                      +-+-+|+++..+..+.....+.                   + .. +|..-  ++.+.+.-=+....=++..+.+|++..
T Consensus       319 ~vl~~~lvi~~~~~~~~~~~~~-------------------~-~~-f~i~g--ll~g~s~G~~qA~SRSy~~~lvp~~k~  375 (438)
T COG2270         319 PVLMIGLVILSIAALYLIFLEG-------------------E-LD-FWILG--LLVGTSLGGAQASSRSYLARLVPKGKE  375 (438)
T ss_pred             eeehHHHHHHHHHHHHHHHccc-------------------c-HH-HHHHH--HHHHHhcchHHHHHHHHHHHhCCCccc
Confidence            4566777776666555444331                   1 22 33332  555555556667777899999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhhhccC
Q 011824          379 SIGSAYAALAGGLGCFAASILNSIIKSVTG  408 (476)
Q Consensus       379 g~~~gl~~l~~a~g~~l~~~l~~~~~~~~~  408 (476)
                      +...|++.++.=.++.+|+.+.+.+..+|+
T Consensus       376 ~~fFglyaltgra~S~~gp~lv~v~t~iTg  405 (438)
T COG2270         376 GRFFGLYALTGRAASFLGPFLVAVITQITG  405 (438)
T ss_pred             cceeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999887774

>TIGR00901 2A0125 AmpG-related permease

Probab=96.49  E-value=0.13  Score=51.73  Aligned_cols=63  Identities=16%  Similarity=0.042  Sum_probs=53.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      .+.+++...+++.++.-.+..|...+++.+..|++.|+...|+......+|..+++.+...+.
T Consensus        81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~  143 (356)
T TIGR00901        81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLA  143 (356)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345555666778888888899999999999999999999999999999999999988886554

>TIGR00899 2A0120 sugar efflux transporter

Probab=96.45  E-value=0.17  Score=50.92  Aligned_cols=89  Identities=12%  Similarity=-0.008  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHH--HHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCccccc
Q 011824          344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIG--SAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQN  421 (476)
Q Consensus       344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~--~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  421 (476)
                      .++++..-++++.++....|...+.+.+..|++.|+..  .+......++|..+++.+.......-        +|    
T Consensus        87 ~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~--------~~----  154 (375)
T TIGR00899        87 YFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF--------GF----  154 (375)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc--------cc----
Confidence            34444455667777777888888888888888776643  56666666777777777766543211        23    


Q ss_pred             CcCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 011824          422 INTGRFDYLYWLLAVLSVINFCAFLYSAY  450 (476)
Q Consensus       422 ln~~~~~~~f~lla~l~~~~~~~~~~~~~  450 (476)
                            ...|++.+.++++..++.+...+
T Consensus       155 ------~~~f~~~~~~~~~~~~~~~~~~~  177 (375)
T TIGR00899       155 ------TVMFLTAALAFVLCGVLVWLFLP  177 (375)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHhCC
Confidence                  23556666666655555444333

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=96.38  E-value=0.13  Score=54.48  Aligned_cols=169  Identities=14%  Similarity=0.104  Sum_probs=92.9

Q ss_pred             hhhhhhhhhhhHHHHHHHHhhhhhhHHHHhhhccccccCeeecCCcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCC
Q 011824          216 TLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGA  295 (476)
Q Consensus       216 ~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~~m~~~~~g~~ip~~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~  295 (476)
                      +++++.-.+...-+.|.+..-..+-+ .|...++..      -...+..+.++.-++..|+..++-.+...|.+++    
T Consensus         5 ~li~~~~~~~Giq~~~~l~~~~l~~y-l~~lg~~~~------~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR----   73 (477)
T TIGR01301         5 KLLRVASVAAGVQFGWALQLSLLTPY-VQELGIPHA------WASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR----   73 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHH------HHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCCh----
Confidence            45555555555555555533333222 222222221      1234556677888888888877766543344322    


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 011824          296 SQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD  375 (476)
Q Consensus       296 s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~  375 (476)
                      ++.  +..|.+..+++++..+..........      +..+...+....++.+..+.+..++--+..+..-+++.+..|+
T Consensus        74 rp~--il~g~~~~~~~l~ll~~~~~~~~~~~------~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~  145 (477)
T TIGR01301        74 RPF--IAAGAALVAFAVILIGFAADIGHLFG------DNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGG  145 (477)
T ss_pred             HHH--HHHHHHHHHHHHHHHHhCchhhhhcc------ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCc
Confidence            221  34456666666666554432110000      0000011102233444445555556666667778999999999


Q ss_pred             hhH--HHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824          376 AMK--SIGSAYAALAGGLGCFAASILNSII  403 (476)
Q Consensus       376 ~~k--g~~~gl~~l~~a~g~~l~~~l~~~~  403 (476)
                      +.|  +...+......++|+.+|..+....
T Consensus       146 ~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~  175 (477)
T TIGR01301       146 DARRTRIANAYFSFFMAIGNVLGYAAGAYS  175 (477)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            876  5678888888899999988877653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.37  E-value=0.00054  Score=73.71  Aligned_cols=153  Identities=13%  Similarity=0.126  Sum_probs=3.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHh----hhhhh-----h---cC-C--------cc------cccCCCcchhHHHHHH
Q 011824          297 QLQRVGIGLAVSILSVIWAGIFERYR----RNYAI-----S---HG-Y--------EF------SFLTAMPDLSAYWLLI  349 (476)
Q Consensus       297 ~l~ki~iG~~l~~ls~~~~~~~~~~~----~~~~~-----~---~g-~--------~~------~~~~~~~~~s~~wlip  349 (476)
                      .++-+++|.++++++.++.++-+..-    .....     +   .. +        .+      .......+...++++.
T Consensus        67 rprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  146 (539)
T PF03137_consen   67 RPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFIL  146 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHH
Confidence            45679999999999998887665431    11000     0   00 1        00      0001111123455667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhc----cCCC------CCCCCCccc
Q 011824          350 QYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSV----TGNP------KKGQPNWLA  419 (476)
Q Consensus       350 ~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~----~~~~------~~~~~~~~~  419 (476)
                      .-+++|+|..-+.+.|.+++.+.++++..++++|+.+....+|..+|-++++..-++    ...+      ..+||.|+.
T Consensus       147 gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvG  226 (539)
T PF03137_consen  147 GQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVG  226 (539)
T ss_dssp             -----SSS------------------------------------------------------------------------
T ss_pred             HHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHH
Confidence            779999999999999999999999999999999999999888887776665533221    1000      112444531


Q ss_pred             ccCcCchhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 011824          420 QNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR  455 (476)
Q Consensus       420 ~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~~  455 (476)
                      .      =..-|.+.+.+.++..+.++.+-|++...
T Consensus       227 A------WWLGfli~g~~~~l~aipl~~FPk~lp~~  256 (539)
T PF03137_consen  227 A------WWLGFLICGILLFLSAIPLFFFPKKLPGT  256 (539)
T ss_dssp             ------------------------------------
T ss_pred             H------HHHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence            0      01124457777777777777777766444

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00897 2A0118 polyol permease family

Probab=96.33  E-value=0.27  Score=50.66  Aligned_cols=112  Identities=13%  Similarity=0.039  Sum_probs=72.0

Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824          261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  340 (476)
Q Consensus       261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  340 (476)
                      +..+...+...+..|+..++..+..+           .+-+.+|.++.+++.+.......                  ..
T Consensus        52 ~~~~~~~~~~~i~~~~~g~l~dr~g~-----------k~~l~~~~~~~~~~~~~~~~~~~------------------~~  102 (402)
T TIGR00897        52 SAFTLYGIAAAISAWISGVVAEIIGP-----------LKTMMIGLLLWCVGHAAFIVFGL------------------GH  102 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCc-----------HHHHHHHHHHHHHHHHHHHHHhc------------------cC
Confidence            34455555666666666555433322           22355677776666543322111                  01


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHH-HHHHHHHHH
Q 011824          341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGC-FAASILNSI  402 (476)
Q Consensus       341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~-~l~~~l~~~  402 (476)
                       .+.+.++...++.+++.-...+.....+.+..|++.|+..+|++....++|. .+++.+...
T Consensus       103 -~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~  164 (402)
T TIGR00897       103 -ANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSY  164 (402)
T ss_pred             -ccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             2344445567888999888888888888889999999999999999988886 466666543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.30  E-value=1.5  Score=48.60  Aligned_cols=87  Identities=17%  Similarity=0.251  Sum_probs=62.9

Q ss_pred             hHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-----------
Q 011824           29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-----------   97 (476)
Q Consensus        29 ~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~-----------   97 (476)
                      ..+|++|..+.++|.--+-|-=.+.+=|...+      ++...++.++|..--+|-++|.++++++-+-           
T Consensus       237 ~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~------~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~i  310 (735)
T KOG3626|consen  237 FLLFFLGQLLLGIGATPIFTLGISYIDDNVKK------KNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGI  310 (735)
T ss_pred             HHHHHHHHHHhhcCCCCCccCCCccccccccc------cCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCC
Confidence            44788888888888766555444443333332      2357788999999999999999998876421           


Q ss_pred             --------cchhHHHHHHHHHHHHHHHHHHhh
Q 011824           98 --------HGWGSAFGALAIAMGISNMLFFIG  121 (476)
Q Consensus        98 --------~g~~~~F~i~~~~~~i~~i~f~~~  121 (476)
                              -.||++|++++..++++.+.++..
T Consensus       311 t~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~f  342 (735)
T KOG3626|consen  311 TPTDPRWIGAWWLGFLICGALLLFSAVPLFFF  342 (735)
T ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence                    149999999999988888777654

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=96.29  E-value=0.091  Score=56.03  Aligned_cols=84  Identities=12%  Similarity=0.112  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh--
Q 011824          299 QRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA--  376 (476)
Q Consensus       299 ~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~--  376 (476)
                      +-+.+|.++.+++.+.+++...                   . ...  ++...+++++|+-+..|....++.++-|++  
T Consensus        82 ~~~~~g~~~~~~g~~~~~~~~~-------------------~-~~l--l~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~  139 (489)
T PRK10207         82 RTIVLGAIVLAIGYFMTGMSLL-------------------K-PDL--IFIALGTIAVGNGLFKANPASLLSKCYPPKDP  139 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc-------------------c-hhH--HHHHHHHHHhccccccCCHHHHHHHhcCCCch
Confidence            3577888888887766654311                   0 111  234568889999999999999999999877  


Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          377 MKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       377 ~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      .|+...+.+++...+|..+|+.+..++.
T Consensus       140 ~~~~~~~~~~~~~nig~~~g~~l~g~l~  167 (489)
T PRK10207        140 RLDGAFTLFYMSINIGSLISLSLAPVIA  167 (489)
T ss_pred             hhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            4477889999999999999988887764

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=96.26  E-value=0.25  Score=50.83  Aligned_cols=108  Identities=12%  Similarity=0.114  Sum_probs=76.3

Q ss_pred             CcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 011824          260 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM  339 (476)
Q Consensus       260 ~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  339 (476)
                      +++.+...+...++.|+..++-.++.||+           -+.++.++.+++.+..+..                     
T Consensus        41 ~~~~~~~~l~~~l~~~~~G~laDr~grr~-----------vl~~~~~~~~~~~~~~~~~---------------------   88 (393)
T PRK11195         41 PLLQMFFVLAYIVLAPFVGAFADSFPKGR-----------VMFIANGIKLLGCLLMLFG---------------------   88 (393)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhhccCCch-----------hhHHHHHHHHHHHHHHHHH---------------------
Confidence            34556666677777888776654443331           2445555555544332221                     


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          340 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       340 ~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                        .+.   +...+++|+++.+..|...+.+.+..|++.++..+|++.....+|..+|+.++++..
T Consensus        89 --~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~  148 (393)
T PRK11195         89 --IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA  148 (393)
T ss_pred             --HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              111   334578999999999999999999999999999999999888888888888887654

>TIGR00883 2A0106 metabolite-proton symporter

Probab=96.25  E-value=0.045  Score=55.20  Aligned_cols=90  Identities=16%  Similarity=0.197  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH
Q 011824          300 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKS  379 (476)
Q Consensus       300 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg  379 (476)
                      -+.+|.++.+++.+..+......           .   ... ...++++...+++|++.-...+....++.+..|++.|+
T Consensus        67 ~l~~~~~~~~~~~~~~~~~~~~~-----------~---~~~-~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~  131 (394)
T TIGR00883        67 TLVITLLMMGIGTLLIGLLPSYA-----------T---IGI-WAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRG  131 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhCCChh-----------h---hHH-HHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccch
Confidence            35567777777666555432210           0   000 22334566778999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          380 IGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       380 ~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      ..++++.....+|..+++.+...+.
T Consensus       132 ~~~~~~~~~~~~G~~i~~~~~~~~~  156 (394)
T TIGR00883       132 FYGSFQQVGAPVGLLLAALTVLLLS  156 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988776543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00889 2A0110 nucleoside transporter

Probab=96.23  E-value=0.011  Score=61.71  Aligned_cols=86  Identities=15%  Similarity=0.208  Sum_probs=68.4

Q ss_pred             hHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHhhc------cchh
Q 011824           29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQME------HGWG  101 (476)
Q Consensus        29 ~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY-~~iNiGa~i~~~l~~~l~~~------~g~~  101 (476)
                      ...+++...+.+++.+...+....++.|.+++++      |.+++.+++ ...++|..+||.+.|++.++      +||+
T Consensus       308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~  381 (418)
T TIGR00889       308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ  381 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence            4556677778888888888999999999988532      788899997 56789999999999999887      4699


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 011824          102 SAFGALAIAMGISNMLFFI  120 (476)
Q Consensus       102 ~~F~i~~~~~~i~~i~f~~  120 (476)
                      ..|.++++..+++.+.++.
T Consensus       382 ~~f~~~~~~~~i~~~l~~~  400 (418)
T TIGR00889       382 TMWLFFAGYIAILAVLFMI  400 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999887776666555443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00896 CynX cyanate transporter

Probab=96.11  E-value=0.2  Score=50.45  Aligned_cols=108  Identities=15%  Similarity=0.106  Sum_probs=72.2

Q ss_pred             CcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 011824          260 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM  339 (476)
Q Consensus       260 ~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  339 (476)
                      ++..+++.+...+..|+..++..++.+|           +-+.+|.++.+++.+.. ..                     
T Consensus        38 g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~-~~---------------------   84 (355)
T TIGR00896        38 GLLTALPVLCFAVLAPLAPWLARRFGEE-----------RSVAAGLLLIAAGILIR-SA---------------------   84 (355)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhCch-----------HHHHHHHHHHHHHHHHH-Hh---------------------
Confidence            3455666777777777777665443322           23566666655554332 10                     


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824          340 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  403 (476)
Q Consensus       340 ~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~  403 (476)
                        .+.++++...++.+++.-+..+.....+.+..|+ .|+..+|++.....+|..+++.+...+
T Consensus        85 --~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~i~~~~~~~l  145 (355)
T TIGR00896        85 --PGTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-RVGLMTGLYSMALMGGAALAAAATVPL  145 (355)
T ss_pred             --ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              1234445567888999988887777777777774 789999999998888888888776554

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.05  E-value=0.085  Score=55.82  Aligned_cols=116  Identities=16%  Similarity=0.213  Sum_probs=86.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 011824          297 QLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA  376 (476)
Q Consensus       297 ~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~  376 (476)
                      ..+-+.++.++.+++-+..-+...                     .+.+.++..-+++|++|-...|..-....+-+|+.
T Consensus       102 ~r~v~~~~~~~sa~~t~l~P~aa~---------------------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~  160 (466)
T KOG2532|consen  102 ARRVFFISGLISALLTLLTPLAAS---------------------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPN  160 (466)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHH---------------------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHH
Confidence            444577787777766555444322                     33445677789999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 011824          377 MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAY  450 (476)
Q Consensus       377 ~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~  450 (476)
                      .|+...++.+....+|..++-.+.+..-..+       -+|-          .-|.+.++++++-.+++..+.+
T Consensus       161 Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~-------~GW~----------sifY~~g~~g~i~~~~w~~~~~  217 (466)
T KOG2532|consen  161 ERSTFIAILTAGSQLGTIITMPVSGLLCESS-------LGWP----------SIFYVFGIVGLIWFILWFLFYS  217 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHhccC-------CCCc----------hHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999998899888877776544211       2473          4566678888777777766655

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=96.04  E-value=0.17  Score=59.74  Aligned_cols=62  Identities=13%  Similarity=0.066  Sum_probs=57.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          343 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       343 s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      +.++++..-+++|+++.+..|+..+.+.+..|++.++..+|+.....++|..+|+.+.+++.
T Consensus       107 s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~  168 (1140)
T PRK06814        107 SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLAT  168 (1140)
T ss_pred             hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777788899999999999999999999999999999999999999999999999998765

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.01  E-value=0.32  Score=51.89  Aligned_cols=88  Identities=15%  Similarity=0.200  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcC
Q 011824          345 YWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT  424 (476)
Q Consensus       345 ~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~  424 (476)
                      +-++...+++|+.|-...|........-=.++.+|..+|+|+...++|+.+|+++..-+.+...  ..+-.+|       
T Consensus       135 ~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~--~~~~~gW-------  205 (495)
T KOG2533|consen  135 PGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNG--SGGLAGW-------  205 (495)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcC--CCCcCCc-------
Confidence            3345667999999999999999999999999999999999999999999999999876543221  1112345       


Q ss_pred             chhHHHHHHHHHHHHHHHHH
Q 011824          425 GRFDYLYWLLAVLSVINFCA  444 (476)
Q Consensus       425 ~~~~~~f~lla~l~~~~~~~  444 (476)
                         -+.|.+-++++++.+++
T Consensus       206 ---~~~FiI~G~i~~~~gi~  222 (495)
T KOG2533|consen  206 ---RWLFIIEGVITLVLGIV  222 (495)
T ss_pred             ---eeehhHHHHHHHHHHhe
Confidence               25777778877776654

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.00  E-value=1.5  Score=46.17  Aligned_cols=88  Identities=14%  Similarity=0.098  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchh
Q 011824          348 LIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRF  427 (476)
Q Consensus       348 ip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~  427 (476)
                      ...+++.|+++.+....-+..+....| +-+..+-+++-+..++++-++-......                      .+
T Consensus       357 ~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~~~----------------------~l  413 (461)
T KOG3098|consen  357 LIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSPYL----------------------LL  413 (461)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhhhh----------------------HH
Confidence            445799999999999999999999994 4556677777777777776644332110                      12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 011824          428 DYLYWLLAVLSVINFCAFLYSAYRYKYRSEQ  458 (476)
Q Consensus       428 ~~~f~lla~l~~~~~~~~~~~~~~y~~~~~~  458 (476)
                      ..+...+.+++.+..+++...+++++...++
T Consensus       414 ~~~~l~~~i~~~i~~~~~~~~~~~~~~~~~k  444 (461)
T KOG3098|consen  414 YIYTLGLPIFCVIATTIFFIVAERTQAMEKK  444 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2355567778888888888888888654433

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=95.92  E-value=0.27  Score=52.52  Aligned_cols=115  Identities=11%  Similarity=0.075  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh--
Q 011824          300 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM--  377 (476)
Q Consensus       300 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~--  377 (476)
                      -+.+|.++.+++....++..                      .+..++....++.++|.-+..|....++.++-|++.  
T Consensus        90 ~~~~g~~~~~ig~~l~~~~~----------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~  147 (500)
T PRK09584         90 VIMLGAIVLAIGYALVAWSG----------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR  147 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHhc----------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh
Confidence            46677777777655544321                      112234455678899999888888899999887643  


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 011824          378 KSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY  454 (476)
Q Consensus       378 kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~  454 (476)
                      ++...++++....+|..+|+.+.+++....        +|          .+-|.+.++.+++..+.++...+.++.
T Consensus       148 ~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~--------g~----------~~~F~i~~i~~~i~~i~~~~~~~~~~~  206 (500)
T PRK09584        148 LDGAFTMYYMSINIGSFFSMLATPWLAAKY--------GW----------SVAFALSVVGMLITVVNFAFCQRWVKQ  206 (500)
T ss_pred             hhhcchHHHHHHHHHHHHHHHHHHHHHHhh--------CH----------HHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence            344678888999999999988887654211        23          235555666666666677766655554

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=95.88  E-value=0.46  Score=50.38  Aligned_cols=55  Identities=15%  Similarity=0.079  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHH
Q 011824          345 YWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILN  400 (476)
Q Consensus       345 ~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~  400 (476)
                      +.++...++.|+++....+ ....+.+..|++.||..+|++.....+|..+++.+.
T Consensus       125 ~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~  179 (476)
T PLN00028        125 TGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLM  179 (476)
T ss_pred             HHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHH
Confidence            3344556888999876543 456788899999999999998766556666555444

>TIGR00806 rfc RFC reduced folate carrier

Probab=95.73  E-value=3.4  Score=43.80  Aligned_cols=84  Identities=15%  Similarity=0.075  Sum_probs=66.4

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH---
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF---  104 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F---  104 (476)
                      +...+.+..++.++|.|..- .....+...+++++      |.++.+++-.+.++|.++++.+++++. ++||+.-+   
T Consensus       114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~~Ln  185 (511)
T TIGR00806       114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISYSTLN  185 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHHH
Confidence            56778888889999999988 99999999998533      788899999999999999999999854 67876544   


Q ss_pred             HHHHHHHHHHHHHHH
Q 011824          105 GALAIAMGISNMLFF  119 (476)
Q Consensus       105 ~i~~~~~~i~~i~f~  119 (476)
                      .|+...+.+++++-+
T Consensus       186 ~Isl~s~~~a~~~a~  200 (511)
T TIGR00806       186 IISLVFMTFSVFLAL  200 (511)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            455555555555433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=95.73  E-value=0.36  Score=50.32  Aligned_cols=107  Identities=10%  Similarity=0.041  Sum_probs=74.0

Q ss_pred             HHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHH
Q 011824          275 SLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLI  354 (476)
Q Consensus       275 pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~  354 (476)
                      |+-..+.-++..|.++       .+-+.+++++.+++.+..++...+..              ... .++.+++..-+++
T Consensus        77 ~ig~~~~G~l~Dr~Gr-------r~~l~~~~~~~~~~~~~~~~~~~~~~--------------~~~-~~~~~l~~~R~l~  134 (432)
T PRK10406         77 PIGGWLFGRIADKHGR-------KKSMLISVCMMCFGSLVIACLPGYET--------------IGT-WAPALLLLARLFQ  134 (432)
T ss_pred             HHHHHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHHHhhcCCchh--------------HHH-HHHHHHHHHHHHH
Confidence            4444455555666432       23466777777776666554321100              001 2345667778999


Q ss_pred             HHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824          355 GIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  403 (476)
Q Consensus       355 ~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~  403 (476)
                      |+||-...|....++.+..|++.||..++++......|..++..+...+
T Consensus       135 G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~  183 (432)
T PRK10406        135 GLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVL  183 (432)
T ss_pred             HhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999888888888877665443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=95.67  E-value=0.49  Score=50.94  Aligned_cols=115  Identities=17%  Similarity=0.188  Sum_probs=77.1

Q ss_pred             CcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 011824          260 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM  339 (476)
Q Consensus       260 ~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  339 (476)
                      +.+++...+..+++.|+-..+..++-||+           -+..+-++.++..+..++....                 .
T Consensus        48 alv~~a~~LP~~Llsl~aG~laDr~drrr-----------ili~~~~~~~~~~~~L~~l~~~-----------------~   99 (524)
T PF05977_consen   48 ALVQAASTLPILLLSLFAGALADRFDRRR-----------ILILSQLLRALVALLLAVLAFF-----------------G   99 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccchH-----------HHHHHHHHHHHHHHHHHHHHHh-----------------C
Confidence            45677778888888888777765554431           1233333333333333333221                 1


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824          340 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  403 (476)
Q Consensus       340 ~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~  403 (476)
                      . .+++.++...++.+++..+..|+-.+.+-++.|++.-....++......++..+|+.+++.+
T Consensus       100 ~-~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~L  162 (524)
T PF05977_consen  100 L-LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGIL  162 (524)
T ss_pred             c-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHH
Confidence            1 56676777789999999999999999999999998887777777776666666666665543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=95.62  E-value=1.1  Score=48.03  Aligned_cols=84  Identities=15%  Similarity=0.246  Sum_probs=61.3

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGA  106 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~-~g~~~~F~i  106 (476)
                      +...+++|.++.++|.|+..-.+.-+++|.-+++      .|...-+.+.+++++|.+++..+....++. .+|+..+++
T Consensus       141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~------~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~  214 (513)
T KOG0254|consen  141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAH------IRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGL  214 (513)
T ss_pred             hHHHHHHHHHHhccchhhhhhcchhhHhhcCChh------hhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHH
Confidence            7788999999999999999866666666665432      377788889999999999995554444432 489988877


Q ss_pred             HHHHHHHHHHH
Q 011824          107 LAIAMGISNML  117 (476)
Q Consensus       107 ~~~~~~i~~i~  117 (476)
                      ..+..++-.+.
T Consensus       215 ~~i~~~~~~~~  225 (513)
T KOG0254|consen  215 ALIPAVILALG  225 (513)
T ss_pred             HHHHHHHHHHH
Confidence            66654443333

>PRK15011 sugar efflux transporter B; Provisional

Probab=95.56  E-value=1.1  Score=45.94  Aligned_cols=88  Identities=11%  Similarity=0.027  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhH--HHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccC
Q 011824          345 YWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK--SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNI  422 (476)
Q Consensus       345 ~wlip~~~l~~igEll~~p~~lef~~~~aP~~~k--g~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l  422 (476)
                      ++++....+.+..+....|.....+.+..|++-|  +.+.++.....++|..+++.+...+...-        +|     
T Consensus       106 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~--------gw-----  172 (393)
T PRK15011        106 FVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF--------SF-----  172 (393)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc--------Ch-----
Confidence            3333334455555667788888888877766544  45567777788888888888887654211        24     


Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 011824          423 NTGRFDYLYWLLAVLSVINFCAFLYSAY  450 (476)
Q Consensus       423 n~~~~~~~f~lla~l~~~~~~~~~~~~~  450 (476)
                           ...|++.++++++..+..+...+
T Consensus       173 -----~~~f~~~~~~~~~~~~~~~~~~~  195 (393)
T PRK15011        173 -----TVMYLSAAVAFIVCGVMVWLFLP  195 (393)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHhhcC
Confidence                 23556666666665554443333

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=95.53  E-value=1.2  Score=46.97  Aligned_cols=116  Identities=12%  Similarity=0.063  Sum_probs=70.5

Q ss_pred             cCCcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccC
Q 011824          258 PVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLT  337 (476)
Q Consensus       258 p~~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~  337 (476)
                      .++++..+..+..+... +.....-++..|.+       +.+-+.+++++.++..+..++...                 
T Consensus        68 s~~q~g~l~ai~~l~~a-l~rip~G~l~Dr~G-------~R~v~~~~~ll~~i~~~~~~~a~~-----------------  122 (462)
T PRK15034         68 TTDQLFLLTALPSVSGA-LLRVPYSFMVPIFG-------GRRWTVFSTAILIIPCVWLGIAVQ-----------------  122 (462)
T ss_pred             CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhC-------ChHHHHHHHHHHHHHHHHHHHHHc-----------------
Confidence            34444433333333332 22333345556643       333456677776666665544211                 


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH----HHhHHHHHHHHHHH
Q 011824          338 AMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAA----LAGGLGCFAASILN  400 (476)
Q Consensus       338 ~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~----l~~a~g~~l~~~l~  400 (476)
                      ... .|.+.++...++.|++ -...+.++..+.+..|++.||+.+|++.    +...++..+.+.+.
T Consensus       123 ~~~-~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i  187 (462)
T PRK15034        123 NPN-TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVI  187 (462)
T ss_pred             ccC-CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            001 3566677788999998 5588889999999999999999999994    44445555555544

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=95.42  E-value=0.59  Score=49.67  Aligned_cols=107  Identities=17%  Similarity=0.151  Sum_probs=74.9

Q ss_pred             HHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHH
Q 011824          275 SLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLI  354 (476)
Q Consensus       275 pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~  354 (476)
                      |+-..+.-++..|.++       .+-+.+++++.+++.+..++...+..     -|         . ..+.+++..-+++
T Consensus        71 ~ig~~~~G~l~Dr~Gr-------r~~l~~~~~l~~i~~~~~a~~~~~~~-----~g---------~-~a~~~l~~~R~l~  128 (490)
T PRK10642         71 PLGGLFFGMLGDKYGR-------QKILAITIVIMSISTFCIGLIPSYAT-----IG---------I-WAPILLLLCKMAQ  128 (490)
T ss_pred             HHHHHHHHHHHHhccc-------HHHHHHHHHHHHHHHHHHHhcccHHH-----HH---------H-HHHHHHHHHHHHH
Confidence            3444444455565432       23467788888887777665543200     00         0 1223466778999


Q ss_pred             HHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824          355 GIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  403 (476)
Q Consensus       355 ~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~  403 (476)
                      |+|+-...+.+..++.+..|++.||.+++++.....+|..+|+.+..++
T Consensus       129 G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~  177 (490)
T PRK10642        129 GFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLI  177 (490)
T ss_pred             HhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988888888887766543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=95.21  E-value=0.42  Score=49.27  Aligned_cols=84  Identities=12%  Similarity=0.040  Sum_probs=73.1

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011824          295 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP  374 (476)
Q Consensus       295 ~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP  374 (476)
                      -+|.+=|++|++++++..+..+..                       .|.+.+...++++|+-+-.-.|..-..++.--|
T Consensus        91 ~npr~fm~~gLilsai~nil~Gfs-----------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfs  147 (448)
T COG2271          91 SNPRYFMAFGLILSAIVNILFGFS-----------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFS  147 (448)
T ss_pred             CCCceeehHHHHHHHHHHHHHhhh-----------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcC
Confidence            466677899999999998887654                       345556677899999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhHHHHHHHHHHHH
Q 011824          375 DAMKSIGSAYAALAGGLGCFAASILNS  401 (476)
Q Consensus       375 ~~~kg~~~gl~~l~~a~g~~l~~~l~~  401 (476)
                      ++.||...++|..+..+|..+.+.+..
T Consensus       148 r~eRG~~~siWn~shNiGGal~~~~~~  174 (448)
T COG2271         148 RKERGTWWSIWNTSHNIGGALAPLVAL  174 (448)
T ss_pred             ccccCceEEEehhhhhcccchHHHHHH
Confidence            999999999999999999999998883

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=95.21  E-value=1.5  Score=43.17  Aligned_cols=87  Identities=10%  Similarity=0.277  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchhHH
Q 011824          350 QYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDY  429 (476)
Q Consensus       350 ~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~~~  429 (476)
                      ...++|++--++.-..--.+....|++.-|+.-|+...-..+|-.+.+++++++..  +     ++++       -.++.
T Consensus       358 ~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d--~-----~g~y-------~~le~  423 (459)
T KOG4686|consen  358 SMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIAD--G-----DGSY-------DNLEA  423 (459)
T ss_pred             HHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeec--C-----CCch-------hhHHH
Confidence            45778888888888788888899999999999888888888888887777776542  1     1222       13566


Q ss_pred             HHHHHHHHHHHHHHHHHHhhc
Q 011824          430 LYWLLAVLSVINFCAFLYSAY  450 (476)
Q Consensus       430 ~f~lla~l~~~~~~~~~~~~~  450 (476)
                      ||.....+++.+..+.+...|
T Consensus       424 ffl~~~~~aL~svgil~~~N~  444 (459)
T KOG4686|consen  424 FFLIIGLMALTSVGILFYLNK  444 (459)
T ss_pred             HHHHHHHHHHHHHHHHhheec
Confidence            887777777777666655444

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=95.21  E-value=0.87  Score=46.17  Aligned_cols=134  Identities=16%  Similarity=0.139  Sum_probs=88.1

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011824          295 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP  374 (476)
Q Consensus       295 ~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP  374 (476)
                      .++.+-+..++++.+++...       |.     .            .+.+-++...++.+.|-..+++..-+++=+.-|
T Consensus        74 ~g~er~l~~~Llli~~G~~i-------R~-----~------------~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp  129 (395)
T COG2807          74 FGEERSLFLALLLIAAGILI-------RS-----L------------GGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP  129 (395)
T ss_pred             HhhHHHHHHHHHHHHHHHHH-------Hh-----c------------ccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc
Confidence            56677788888876665432       21     0            223445667789999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 011824          375 DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY  454 (476)
Q Consensus       375 ~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~  454 (476)
                      ++. +.+||+|..+.++|..+++.+...+....       .+|-        ....+  .+.++++++++++-...|++.
T Consensus       130 k~~-~~mtglYs~sl~~~aaLaa~lavpla~~~-------~gW~--------~aL~~--WAl~allAl~~WlPq~~r~~~  191 (395)
T COG2807         130 KRV-GLMTGLYSTSLGAGAALAAALAVPLAQHS-------GGWR--------GALGF--WALLALLALLIWLPQALREQA  191 (395)
T ss_pred             cch-hhHHhHHHHHHHHHHHHHhhhhhHHHHhh-------ccHH--------HHHHH--HHHHHHHHHHHHhhhcccccc
Confidence            987 79999999999999999988876554321       1352        22233  366777777777766544432


Q ss_pred             cc-cccCCCcccccccc
Q 011824          455 RS-EQKHGNDYEVMENK  470 (476)
Q Consensus       455 ~~-~~~~~~~~~~~~~~  470 (476)
                      .+ ..+..+...+-.|+
T Consensus       192 ~~~~~~~~~~~~vw~~~  208 (395)
T COG2807         192 ASIATKLVSVRKVWRSP  208 (395)
T ss_pred             cccccccccccccccCc
Confidence            22 22334444444444

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=95.14  E-value=0.12  Score=53.50  Aligned_cols=117  Identities=9%  Similarity=0.042  Sum_probs=72.0

Q ss_pred             cchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcch
Q 011824          263 PVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDL  342 (476)
Q Consensus       263 ~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  342 (476)
                      .++..+.-.+..|++..+..+..+|.+++    +|  -+.+|.++.+++++........                ... .
T Consensus        41 ~~~~~i~~~i~~p~~G~lsDr~~~r~Grr----r~--~i~~~~~~~~i~~~~~~~~~~~----------------~~~-~   97 (437)
T TIGR00792        41 FLVARILDAITDPIMGNIVDRTRTRWGKF----RP--WLLIGAIPFSIVLVLLFTTPDF----------------SAT-G   97 (437)
T ss_pred             HHHHHHHHHhccchheEeeecCCCCCCCc----ch--hHHHhHHHHHHHHHHHHhCCCC----------------Ccc-h
Confidence            33444444555555555544432222221    11  3566777777666554332110                011 3


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 011824          343 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEA-PDAMKSIGSAYAALAGGLGCFAASILNSI  402 (476)
Q Consensus       343 s~~wlip~~~l~~igEll~~p~~lef~~~~a-P~~~kg~~~gl~~l~~a~g~~l~~~l~~~  402 (476)
                      ..+|.+..+++.+++..+..+...+.....+ |++.|+...+.......+|..+++.+...
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~  158 (437)
T TIGR00792        98 KLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLP  158 (437)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3677788888889998888887778877776 57889999998888888888777666543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=94.95  E-value=1.6  Score=44.85  Aligned_cols=56  Identities=16%  Similarity=0.154  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 011824          347 LLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI  402 (476)
Q Consensus       347 lip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~  402 (476)
                      ....|++.|+|=-......++++.+.+|++.|+...++-+.+.=+|..+++.+.+.
T Consensus        92 a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~  147 (403)
T PF03209_consen   92 AALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGR  147 (403)
T ss_pred             HHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            34688999999999999999999999999999999999998888999998887764

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR01272 gluP glucose/galactose transporter

Probab=94.82  E-value=0.33  Score=48.37  Aligned_cols=63  Identities=11%  Similarity=0.019  Sum_probs=57.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      -|..+.+..+++.+.|-.+.-++...++....|++.++..+++-....++|..+++.+.+.+.
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i   70 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI   70 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            356677889999999999999999999999999988999999999999999999999998654

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=94.73  E-value=1.1  Score=47.97  Aligned_cols=85  Identities=18%  Similarity=0.165  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchhH
Q 011824          351 YCLIGIAEVFCIVGLLEFLYEEAPDA--MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFD  428 (476)
Q Consensus       351 ~~l~~igEll~~p~~lef~~~~aP~~--~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~~  428 (476)
                      ..+..+|--+..+....++.++-|++  .|+...++++....+|..+++.+...+....        +|          .
T Consensus       107 l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~--------Gw----------~  168 (493)
T PRK15462        107 LAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY--------SW----------A  168 (493)
T ss_pred             HHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh--------Ch----------H
Confidence            34455665566666677888888875  7888899999988899999999887654211        23          2


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccc
Q 011824          429 YLYWLLAVLSVINFCAFLYSAYRYK  453 (476)
Q Consensus       429 ~~f~lla~l~~~~~~~~~~~~~~y~  453 (476)
                      +-|.+.++.++++.+.++...+++.
T Consensus       169 ~~F~iaaigm~l~li~~~~~~~~l~  193 (493)
T PRK15462        169 MGFGLAAVGMIAGLVIFLCGNRHFT  193 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            3455566666666667666555544

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=94.70  E-value=7.2  Score=41.62  Aligned_cols=83  Identities=16%  Similarity=0.181  Sum_probs=68.2

Q ss_pred             cchhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH
Q 011824           26 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFG  105 (476)
Q Consensus        26 ~~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~  105 (476)
                      ..+...+.+...+.+++.++...+...+++|.+.++.      |..+-++ +.....|+.+++.+.+|+-.  +|++.++
T Consensus       168 a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~  238 (521)
T KOG0255|consen  168 APNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFW  238 (521)
T ss_pred             hCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHH
Confidence            3567888888999999999999999999999998744      5666667 77778888889988888875  8999999


Q ss_pred             HHHHHHHHHHHH
Q 011824          106 ALAIAMGISNML  117 (476)
Q Consensus       106 i~~~~~~i~~i~  117 (476)
                      +..+..++.++.
T Consensus       239 ~~~~~~~~~~~~  250 (521)
T KOG0255|consen  239 IISIPSGLFLLL  250 (521)
T ss_pred             HHHHHHHHHHHH
Confidence            888776655555

>PRK09952 shikimate transporter; Provisional

Probab=94.66  E-value=0.64  Score=48.61  Aligned_cols=110  Identities=17%  Similarity=0.129  Sum_probs=74.3

Q ss_pred             HHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHH
Q 011824          273 ILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYC  352 (476)
Q Consensus       273 ~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~  352 (476)
                      ..|+-..+.-++..|.+       ..+-+.+++++.+++.+..++...+..     -+         - .+++.++..-+
T Consensus        76 ~~~~g~~~~G~l~Dr~G-------rr~~l~~~~~~~~~~~~~~~~~~~~~~-----~~---------~-~~~~~l~~~R~  133 (438)
T PRK09952         76 FRPLGGVVFGHFGDRLG-------RKRMLMLTVWMMGIATALIGLLPSFST-----IG---------W-WAPVLLVTLRA  133 (438)
T ss_pred             HHhhHHHHHHHHHHhhc-------cHHHHHHHHHHHHHHHHHHhcCCcHHH-----HH---------H-HHHHHHHHHHH
Confidence            34554445555666643       223456677777776665554422100     00         0 12223556678


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          353 LIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       353 l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      ++|+++-...|....++.+..|++.||..++......++|..++..+..++.
T Consensus       134 l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~  185 (438)
T PRK09952        134 IQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLIS  185 (438)
T ss_pred             HHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999877665443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=94.61  E-value=0.73  Score=47.20  Aligned_cols=55  Identities=9%  Similarity=0.134  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824          347 LLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  403 (476)
Q Consensus       347 lip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~  403 (476)
                      .+...++.+++.....|...+++.+..+++  +...|......++|..+++.+..++
T Consensus       102 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~g~~~g~~~~g~l  156 (396)
T TIGR00882       102 AIVGGLYLGFVFSAGAGAIEAYIEKVSRNS--NFEYGKARMFGCVGWALCASIAGIL  156 (396)
T ss_pred             HHHHHHHHHHHhccchhhHHHHHHHhhhhc--ccccchhhhhcccHHHHHHHHHhhh
Confidence            344567788888888888888877765543  3444555555566666666666544

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=94.36  E-value=0.49  Score=49.99  Aligned_cols=156  Identities=13%  Similarity=0.079  Sum_probs=89.0

Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824          261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  340 (476)
Q Consensus       261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  340 (476)
                      +..+..++.-.+..|++.++-    .|..      +..+=+..|.+++.+|-++...++..                + +
T Consensus        75 ~viaa~slg~~i~~liF~~Ws----~k~~------~~k~Pli~s~ii~~~g~llY~~l~~~----------------~-~  127 (488)
T KOG2325|consen   75 LVIAASSLGHAIFSLIFGIWS----NKTG------SVKKPLIVSFLIAIIGNLLYLALAYV----------------P-N  127 (488)
T ss_pred             HHHHHHHHHHHhcchhhcccc----cccC------CcccCHHHHHHHHHHHHHHHHHHHhc----------------c-c
Confidence            445557788888888887753    2211      11122678889999988888666652                1 1


Q ss_pred             chhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcchhhHHHHHHHH--HHHhHHHHHHHHHHHHHhhhccCCCCCCCCCc
Q 011824          341 DLSAYWLLIQYCLIGIA-EVFCIVGLLEFLYEEAPDAMKSIGSAYA--ALAGGLGCFAASILNSIIKSVTGNPKKGQPNW  417 (476)
Q Consensus       341 ~~s~~wlip~~~l~~ig-Ell~~p~~lef~~~~aP~~~kg~~~gl~--~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~  417 (476)
                       -+.++++..+++.|+| -.+..--.+.-..+..+.++|+++....  -++..+|..++..+..+-++        +-.|
T Consensus       128 -~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~--------G~~i  198 (488)
T KOG2325|consen  128 -GVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEK--------GFMI  198 (488)
T ss_pred             -chHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCC--------ceEE
Confidence             2568888999999999 5555555555555566666666655444  44445555555554444321        1224


Q ss_pred             cc-ccCcCchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 011824          418 LA-QNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY  454 (476)
Q Consensus       418 ~~-~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~  454 (476)
                      .+ -.+|....  -=|+.+++.++..++.....+--.+
T Consensus       199 ~~~~~~n~YTa--p~w~m~i~~i~~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  199 LPGLIFNMYTA--PAWLMAILWIIYIVIILFFFKEVYR  234 (488)
T ss_pred             cCcceEEecch--HHHHHHHHHHHHHHHHHhheeeccc
Confidence            43 23343222  2244566666666655555444433

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=94.20  E-value=2.6  Score=43.99  Aligned_cols=112  Identities=15%  Similarity=0.069  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchhH
Q 011824          349 IQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFD  428 (476)
Q Consensus       349 p~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~~  428 (476)
                      ..-.+++..+.-..|+|.|+.-+..=+...+...|+-.+   .|+..+..+....+...+  ..+.++|.   .      
T Consensus       364 ~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~---~gq~f~~~~~~~~~~~~~--~~~~~~~~---~------  429 (480)
T KOG2563|consen  364 TTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNL---SGQIFGVILVFIMGILAE--DLGPPGNT---F------  429 (480)
T ss_pred             hhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEe---ehhHHHHHHHHHHHHHhh--ccCCCCCC---c------
Confidence            334677888888899999999988777777777776442   333333333322222111  01011121   0      


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccccCCCccccccccccCC
Q 011824          429 YLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYDS  474 (476)
Q Consensus       429 ~~f~lla~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~  474 (476)
                      ..-+.++..+++..++-.++...|+|++++...|.+|-.|+-..+.
T Consensus       430 ~~~i~~~~~~~l~~~lva~~r~~y~R~~~e~~~~~~~a~~~S~~~~  475 (480)
T KOG2563|consen  430 PANIFLTVSALLGAILVAFFRPDYRRLRAEAGNFIDEAIEDSETSI  475 (480)
T ss_pred             cchhHhHHHHHHHHHHHhhhhhhHHhHhhhhccccccccccCCccc
Confidence            0113345556666666677788888887776556665555544443

>PRK09528 lacY galactoside permease; Reviewed

Probab=94.15  E-value=0.087  Score=54.59  Aligned_cols=86  Identities=15%  Similarity=0.135  Sum_probs=61.8

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA  106 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~-fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i  106 (476)
                      +...++....+.+++.+...+.....+.+.++++.      +...+.. +..+.++|.++++.+.+++.+..||+..|.+
T Consensus       314 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~  387 (420)
T PRK09528        314 GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLI  387 (420)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHH
Confidence            34455566666777777777777777777776532      3344433 5567889999999999999999999999998


Q ss_pred             HHHHHHHHHHHHH
Q 011824          107 LAIAMGISNMLFF  119 (476)
Q Consensus       107 ~~~~~~i~~i~f~  119 (476)
                      .++..++..++.+
T Consensus       388 ~~~~~~i~~~~~~  400 (420)
T PRK09528        388 LGGIVLLFTLISV  400 (420)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777666554444

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=93.75  E-value=1.2  Score=45.44  Aligned_cols=59  Identities=14%  Similarity=-0.022  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      .++++...++.+.+.-...|.....+.+  +++.++...|......++|..+++.+.+...
T Consensus        94 ~~~l~~~~~l~~~~~~~~~p~~~al~~~--~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~  152 (382)
T TIGR00902        94 AWLLFIAIGLFALFFSAGMPIGDALANT--WQKQFGLDYGKVRLIGSAAFIIGSALFGGLI  152 (382)
T ss_pred             HHHHHHHHHHHHHHHccchhHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            4555566777888877777887776643  3567788889888888888888888776654

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=93.75  E-value=1.2  Score=45.49  Aligned_cols=58  Identities=10%  Similarity=0.012  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824          344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  403 (476)
Q Consensus       344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~  403 (476)
                      .|.++....+.+++.....|.....+.+..+  .++..+|......++|..+|+.+..+.
T Consensus        94 ~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~--~~~~a~~~~~~~~~lg~~igp~lgg~l  151 (382)
T PRK11128         94 FWLLFVAIGLFNLFFSPLVPLTDALANTWQK--QIGLDYGKVRLWGSIAFVIGSALTGKL  151 (382)
T ss_pred             HHHHHHHHHHHHHHHcccccHHHHHHHHHHh--hccCCcchHHHHHHHHHHHHHHHHHHH
Confidence            4444455666788877777766655555432  344444444544556666666666544

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=93.61  E-value=0.27  Score=52.32  Aligned_cols=86  Identities=16%  Similarity=0.199  Sum_probs=74.3

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hhHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGA  106 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g-~~~~F~i  106 (476)
                      +.+.|++.-+++++..|...+...++.++..|++.      ...+|.+|-..--..+++||++.+.+.+..| .+.+|+.
T Consensus       379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~  452 (477)
T PF11700_consen  379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLF  452 (477)
T ss_pred             cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence            45557777778999999999999999999998754      4779999999999999999999999988775 8899988


Q ss_pred             HHHHHHHHHHHHH
Q 011824          107 LAIAMGISNMLFF  119 (476)
Q Consensus       107 ~~~~~~i~~i~f~  119 (476)
                      -.+.++++++++.
T Consensus       453 l~~lf~~gl~ll~  465 (477)
T PF11700_consen  453 LLVLFLIGLILLF  465 (477)
T ss_pred             HHHHHHHHHHHHh
Confidence            8888888887774

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=93.49  E-value=2.9  Score=45.66  Aligned_cols=120  Identities=13%  Similarity=0.136  Sum_probs=75.8

Q ss_pred             ccccccCeeecCCcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011824          248 MNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAI  327 (476)
Q Consensus       248 m~~~~~g~~ip~~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~  327 (476)
                      ++.++|+- -.-.|+...+.+..-+..|++.++..-+.||.           -+.+|.++..++.++.+-.+        
T Consensus        70 I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~-----------~~i~g~~l~vvG~Iv~atA~--------  129 (599)
T PF06609_consen   70 INADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRY-----------FFIIGSLLGVVGSIVCATAQ--------  129 (599)
T ss_pred             HHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchH-----------HHHHHHHHHHhHHHHhhcCC--------
Confidence            44555532 11246777778877788888888877666653           25667777777776654221        


Q ss_pred             hcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824          328 SHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  403 (476)
Q Consensus       328 ~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~  403 (476)
                                  + ++.  ++-..++.|+|--..... ...+.+..|.+-|....++.....-+....|+.+...+
T Consensus       130 ------------~-~~~--~iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~  189 (599)
T PF06609_consen  130 ------------N-MNT--FIAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLF  189 (599)
T ss_pred             ------------c-HHH--HHHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHh
Confidence                        1 333  356677777775555544 34478889999998887766665555555666666543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=93.20  E-value=0.79  Score=46.80  Aligned_cols=129  Identities=12%  Similarity=0.091  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh--
Q 011824          300 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM--  377 (476)
Q Consensus       300 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~--  377 (476)
                      -+.+|.++..+|.++..+....       ...      ... .+...+.....++++|.-++-|....+..+|-+++.  
T Consensus         3 tI~~g~~~~~~G~~ll~l~~~~-------~~~------~~~-~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~   68 (372)
T PF00854_consen    3 TILLGSIVYLLGHVLLTLSAIP-------PSL------PSG-IQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDS   68 (372)
T ss_dssp             HHHHHHHHHHHHHHH--HHHTS-------SSC-------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTT
T ss_pred             hhhHHHHHHHHHHHHhHHHHhc-------chh------hhh-HHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchh
Confidence            3667888888888775544321       000      011 334455667789999999999999999999988773  


Q ss_pred             -HHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchhHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 011824          378 -KSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRS  456 (476)
Q Consensus       378 -kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~~~  456 (476)
                       +...-..|+....+|..++..+...+..-        -+|          ...|++.++.++++.+.|+...++|+.+.
T Consensus        69 ~~~~~F~~fY~~in~G~~~~~~~~~~i~~~--------~~~----------~~~f~i~~~~~~~~~~~f~~~~~~y~~~~  130 (372)
T PF00854_consen   69 RRDSFFNWFYWGINIGSLFSPTLVPYIQQN--------YGW----------FLGFGIPAIGMLLALIVFLSGRKRYRKVA  130 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHC--------S-H----------HHHHHHHHHHHHHHHHHHHCCCCTT--S-
T ss_pred             hhhhhHHHHHHHHhhhhHhhcccchhhccc--------cch----------hhhhhHHHHHHHHHHHHHHhCCcCCcCcC
Confidence             33445667888999999988776655421        123          45788888999999999999999988774


Q ss_pred             cccC
Q 011824          457 EQKH  460 (476)
Q Consensus       457 ~~~~  460 (476)
                      ..+.
T Consensus       131 ~~~~  134 (372)
T PF00854_consen  131 PPGG  134 (372)
T ss_dssp             ----
T ss_pred             ccCC
Confidence            3333

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=92.30  E-value=2.4  Score=45.41  Aligned_cols=105  Identities=14%  Similarity=0.065  Sum_probs=79.9

Q ss_pred             CcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 011824          260 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM  339 (476)
Q Consensus       260 ~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  339 (476)
                      +++.+...+...+..++..++-..+.||.           -+.++.++..++.++.+..                     
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~-----------~l~~~~~~~~iG~ii~~~a---------------------  139 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDRIGRKK-----------TLLLAVVLFLIGAIIIALA---------------------  139 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----------HHHHHHHHHHHHHHHHHHh---------------------
Confidence            46666667777777777777665555542           2555656555555554432                     


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHH
Q 011824          340 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASI  398 (476)
Q Consensus       340 ~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~  398 (476)
                        .++.+++..-++.|+|=-+.+....-++...+|++.||.+.++..+...+|..++-.
T Consensus       140 --~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~  196 (513)
T KOG0254|consen  140 --PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYC  196 (513)
T ss_pred             --hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHH
Confidence              356778888999999999999999999999999999999999999999999988833

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=92.20  E-value=1.5  Score=46.40  Aligned_cols=58  Identities=14%  Similarity=0.147  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhcc
Q 011824          350 QYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVT  407 (476)
Q Consensus       350 ~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~  407 (476)
                      ..++.|++--+++.......+++--+.-+|+++|++-.....+..+++.+.+......
T Consensus       394 ~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~  451 (488)
T KOG2325|consen  394 FIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLS  451 (488)
T ss_pred             hhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhc
Confidence            4467788888888999999999999999999999999999999999999988766543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=92.12  E-value=9.8  Score=38.71  Aligned_cols=87  Identities=13%  Similarity=0.091  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCc
Q 011824          344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN  423 (476)
Q Consensus       344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln  423 (476)
                      ..|.+....+.++......+....+..+..+++.++.+.+.......+|..+|+.+........        +|      
T Consensus        97 ~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~--------gw------  162 (390)
T TIGR02718        97 AGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF--------GQ------  162 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CH------
Confidence            3455555555666677777777778888888888888888888888888888886655433211        24      


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHh
Q 011824          424 TGRFDYLYWLLAVLSVINFCAFLYS  448 (476)
Q Consensus       424 ~~~~~~~f~lla~l~~~~~~~~~~~  448 (476)
                          ...|++.+++.++..+..+..
T Consensus       163 ----~~~f~~~a~l~~~~~~~~~~~  183 (390)
T TIGR02718       163 ----RPAFLLVACVPLASLVCVLWL  183 (390)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHc
Confidence                235666777776655554333

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK09669 putative symporter YagG; Provisional

Probab=91.53  E-value=0.59  Score=48.86  Aligned_cols=73  Identities=14%  Similarity=0.132  Sum_probs=56.8

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW  100 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~-~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~  100 (476)
                      +...+++...+.++|.|..-|...++.+|..|.++.+. ++.....|+.+.++.++|..+|+.+.+++-+..||
T Consensus       318 ~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        318 NVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            45567777788999999999999999999987543211 11234577889999999999999999988766666

>PRK11462 putative transporter; Provisional

Probab=91.31  E-value=5  Score=42.31  Aligned_cols=58  Identities=9%  Similarity=0.049  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhhHHHHHHHHHHHhHHHHHHHHHHHH
Q 011824          344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP-DAMKSIGSAYAALAGGLGCFAASILNS  401 (476)
Q Consensus       344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP-~~~kg~~~gl~~l~~a~g~~l~~~l~~  401 (476)
                      ..|....|++..++-.+....-.+.....++ ++.|+..++.......+|..+++.+..
T Consensus       109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~  167 (460)
T PRK11462        109 MIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMM  167 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5788889999999999999999999999998 889999999888888888777766653

>PRK15075 citrate-proton symporter; Provisional

Probab=91.25  E-value=5.4  Score=41.46  Aligned_cols=57  Identities=18%  Similarity=0.246  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824          347 LLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  403 (476)
Q Consensus       347 lip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~  403 (476)
                      ++..-++.|+++-...+....++.+..|++.|+..++++.....+|..+++.+...+
T Consensus       120 l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l  176 (434)
T PRK15075        120 VLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLL  176 (434)
T ss_pred             HHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445568899999988888889999999999999999998877777766666655543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=91.01  E-value=14  Score=38.13  Aligned_cols=86  Identities=12%  Similarity=0.067  Sum_probs=56.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 011824          296 SQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD  375 (476)
Q Consensus       296 s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~  375 (476)
                      +..+-|.+|+.+.+++.....=...                   . -++...+...++++.|=-+.-.++..+++...|+
T Consensus        76 gyk~gi~lgL~l~avg~~lF~pAa~-------------------~-~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~  135 (422)
T COG0738          76 GYKAGIVLGLLLYAVGAALFWPAAS-------------------S-KSYGFFLVALFILASGIGLLETAANPYVTLLGKP  135 (422)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhh-------------------h-hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCc
Confidence            3444577888888777654321111                   0 2233445567889999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhHHHHHHHHHHHH
Q 011824          376 AMKSIGSAYAALAGGLGCFAASILNS  401 (476)
Q Consensus       376 ~~kg~~~gl~~l~~a~g~~l~~~l~~  401 (476)
                      +-.+.-+.+--...++|..+++.+++
T Consensus       136 ~~a~~rlnl~q~fn~lGa~~gp~~g~  161 (422)
T COG0738         136 ESAAFRLNLAQAFNGLGAILGPLLGS  161 (422)
T ss_pred             hhHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            76666555555555555555555554

>PTZ00207 hypothetical protein; Provisional

Probab=90.92  E-value=28  Score=38.12  Aligned_cols=77  Identities=8%  Similarity=-0.057  Sum_probs=57.9

Q ss_pred             chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHhhccchhHHHH
Q 011824           27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFG  105 (476)
Q Consensus        27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i-~~~l~~~l~~~~g~~~~F~  105 (476)
                      .+.+.+++...+.++|.|.+.+.......+.|++       +|..+..+...+.++|+.+ +++...++.+  +|+..|+
T Consensus       118 ~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~-------~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl  188 (591)
T PTZ00207        118 GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS-------NRGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFF  188 (591)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHH
Confidence            3677788888899999999888888889999862       1677999999999999975 6666666653  4666666


Q ss_pred             HHHHHHH
Q 011824          106 ALAIAMG  112 (476)
Q Consensus       106 i~~~~~~  112 (476)
                      +.++..+
T Consensus       189 ~l~vl~~  195 (591)
T PTZ00207        189 FLMSFAL  195 (591)
T ss_pred             HHHHHHH
Confidence            5555433

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=90.73  E-value=9.6  Score=34.01  Aligned_cols=62  Identities=10%  Similarity=0.020  Sum_probs=54.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          343 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       343 s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      +.+.++|.-++.|+|+.+.....-.++.+.+.++.++...|+++.....+...|+++.-.+.
T Consensus        88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen   88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667899999999999999999999999999999999999999888888888877665443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=88.78  E-value=6.7  Score=40.53  Aligned_cols=117  Identities=16%  Similarity=0.161  Sum_probs=68.1

Q ss_pred             CeeecCCcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcc
Q 011824          254 KLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEF  333 (476)
Q Consensus       254 g~~ip~~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~  333 (476)
                      ++++.+++...+..+.++...++ .-..-++..|.       .+.+-..+++++..+-.+..++...+            
T Consensus        43 ~~~LS~~q~~ll~aiPil~Gall-Rl~~g~l~drf-------GgR~~~~~s~~l~~IP~~~~~~a~~~------------  102 (417)
T COG2223          43 DFGLSEGQKGLLVAIPILVGALL-RLPYGFLTDRF-------GGRKWTILSMLLLLIPCLGLAFAVTY------------  102 (417)
T ss_pred             ccCCCHHHHHHHHHHHHHHhHHH-HHHHHhhhccc-------CchHHHHHHHHHHHHHHHHHHHHccC------------
Confidence            34666776666666655554332 33334455553       33334556666667766666555321            


Q ss_pred             cccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHH
Q 011824          334 SFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILN  400 (476)
Q Consensus       334 ~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~  400 (476)
                              .|.++++..=++.|++-. .+..++..+.+-=||+.||..+|++- ...+|..+...+.
T Consensus       103 --------~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~  159 (417)
T COG2223         103 --------PSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVA  159 (417)
T ss_pred             --------CchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHH
Confidence                    333444444455555433 34567778888899999999999998 4445544444443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=88.53  E-value=8.7  Score=37.15  Aligned_cols=121  Identities=12%  Similarity=0.046  Sum_probs=72.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 011824          297 QLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA  376 (476)
Q Consensus       297 ~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~  376 (476)
                      |..-..+|.++..+++......-..                ..++.+.|.+.....+.+.|..+.....+--..+.-|+ 
T Consensus        65 p~~~l~iG~~~~~~GY~~~~l~~~~----------------~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-  127 (250)
T PF06813_consen   65 PWVVLLIGAVLGFVGYGLLWLAVSG----------------RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-  127 (250)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhC----------------ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-
Confidence            3344667877777777655443221                11113343333444566677777777777777788886 


Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011824          377 MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK  453 (476)
Q Consensus       377 ~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~  453 (476)
                      .||..+|+--...+++..+=..+...+.              ++     +.+.|..+++....+..++.....|...
T Consensus       128 ~RG~vvgilk~~~GLSaai~t~i~~~~f--------------~~-----~~~~fll~la~~~~~v~l~~~~~vr~~~  185 (250)
T PF06813_consen  128 SRGTVVGILKGFFGLSAAIFTQIYSAFF--------------GD-----DPSSFLLFLAVLPAVVCLVAMFFVRPVP  185 (250)
T ss_pred             ccCceehhhhHHHHhHHHHHHHHHHHHc--------------CC-----ChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence            6999999988888888776444433221              11     1234666677766665555555555544

>PRK10429 melibiose:sodium symporter; Provisional

Probab=87.83  E-value=7.8  Score=40.92  Aligned_cols=57  Identities=11%  Similarity=0.163  Sum_probs=44.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHhHHHHHHHHHH
Q 011824          343 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEA-PDAMKSIGSAYAALAGGLGCFAASIL  399 (476)
Q Consensus       343 s~~wlip~~~l~~igEll~~p~~lef~~~~a-P~~~kg~~~gl~~l~~a~g~~l~~~l  399 (476)
                      ..+|.+..|++..++--+..+.-.+.....+ .++.|....+.-.....+|..+.+.+
T Consensus       105 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~  162 (473)
T PRK10429        105 QYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGF  162 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678888899999999999999999999999 58888888887455555665555443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=87.01  E-value=0.00039  Score=72.76  Aligned_cols=80  Identities=16%  Similarity=0.218  Sum_probs=61.3

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh---ccchhHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM---EHGWGSAF  104 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~---~~g~~~~F  104 (476)
                      +...+.++..+.++|.|+.-+....++.+..+++.      |.....++..+.++|.+++.++...+.+   +.+|+..+
T Consensus       101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~  174 (451)
T PF00083_consen  101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL  174 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccc
Confidence            67888999999999999999999999988876533      5666677778888998888766554433   34599998


Q ss_pred             HHHHHHHHH
Q 011824          105 GALAIAMGI  113 (476)
Q Consensus       105 ~i~~~~~~i  113 (476)
                      .++++..++
T Consensus       175 ~~~~~~~l~  183 (451)
T PF00083_consen  175 IFGAIPSLL  183 (451)
T ss_pred             ccccccccc
Confidence            877766543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=86.60  E-value=20  Score=38.21  Aligned_cols=58  Identities=14%  Similarity=0.181  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHH
Q 011824          344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNS  401 (476)
Q Consensus       344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~  401 (476)
                      .-.++..-++.|+..-+......-|+...||++.||.+-.+.-+...+|..++..++.
T Consensus       116 ~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l  173 (485)
T KOG0569|consen  116 FEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGL  173 (485)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHcc
Confidence            4456778899999999999999999999999999999999999999999999876653

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=86.54  E-value=9  Score=40.28  Aligned_cols=125  Identities=12%  Similarity=0.062  Sum_probs=69.3

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011824          295 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP  374 (476)
Q Consensus       295 ~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP  374 (476)
                      ++...|+..++++..+-+++..+.-..           +.   +.. ...+..+...++.+++..+.-.+.+.++...-|
T Consensus        72 i~~~~Ri~~~lv~~~~~~~~~~~l~~~-----------~~---~~~-~~f~~~~~~v~~~g~~~~~~q~s~~gla~~fp~  136 (437)
T TIGR00939        72 IPVTVRLLGGLVILLVVVILVMVLVKV-----------QT---SET-GFFVTTMASVVIINSGMALLQGSLFGLAGVFPS  136 (437)
T ss_pred             cCccchhHHHHHHHHHHHHHHhheeee-----------cC---Ccc-hHHHHHHHHHHHHHhhhhhhcccchhhcccCCH
Confidence            455668888877655555444332110           00   011 233334456677888888888888888886666


Q ss_pred             hhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchhHHHHHHHHHHHHHHHHHHHHhh
Q 011824          375 DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSA  449 (476)
Q Consensus       375 ~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~  449 (476)
                      +.     ++.+....|++..++..+.-+.....+     | +.   +..++. ..||.+-+++.++.++.|..+.
T Consensus       137 ~~-----~~a~~~G~g~aGv~~s~~~ii~~a~~~-----~-~~---~~~~~a-~~YF~~a~~v~l~~i~~~~~l~  196 (437)
T TIGR00939       137 TY-----SSAVMSGQGLAGVLTSLAMILVKASGN-----D-SH---GLKKSA-LGYFGTPCVVQLICIVCYLLLP  196 (437)
T ss_pred             HH-----HHHHHhcchhHHHHHHHHHHHHHHhcC-----C-cc---chhhhh-hhHHHHHHHHHHHHHHHHHHHh
Confidence            44     444555566666666655433332111     1 00   122222 2366667777777787777664

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=86.41  E-value=12  Score=39.33  Aligned_cols=55  Identities=15%  Similarity=0.201  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh---cchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          349 IQYCLIGIAEVFCIVGLLEFLYEE---APDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       349 p~~~l~~igEll~~p~~lef~~~~---aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      ...++.++|.++..+..-..+.+.   -|++ +|-.++..+....+|+.++..+++...
T Consensus        91 ~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~  148 (433)
T PF03092_consen   91 VLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLL  148 (433)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            344556666666666655555444   3555 888899988889999999888876543

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK09848 glucuronide transporter; Provisional

Probab=86.25  E-value=3.2  Score=43.33  Aligned_cols=91  Identities=11%  Similarity=0.078  Sum_probs=64.2

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchh-----
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWG-----  101 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~-~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~-----  101 (476)
                      +.+.+++++.+.++|.|...+...++.+|..|.++-+. +++...+++.+-++.++|..+|+.+.+.+-+..||.     
T Consensus       318 ~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~~~~~~  397 (448)
T PRK09848        318 SLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYIANQVQ  397 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence            45566777888999999999999999999887543210 122466678899999999999999888775555542     


Q ss_pred             ---------HHH-HHHHHHHHHHHHHH
Q 011824          102 ---------SAF-GALAIAMGISNMLF  118 (476)
Q Consensus       102 ---------~~F-~i~~~~~~i~~i~f  118 (476)
                               ..+ .+|+++++++++++
T Consensus       398 ~~~~~~~i~~~~~~~p~~~~~~~~~~~  424 (448)
T PRK09848        398 TPEVIMGIRTSIALVPCGFMLLAFVII  424 (448)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     222 45666666666554

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=86.07  E-value=6.1  Score=40.54  Aligned_cols=108  Identities=14%  Similarity=0.101  Sum_probs=69.0

Q ss_pred             cchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcch
Q 011824          263 PVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDL  342 (476)
Q Consensus       263 ~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  342 (476)
                      .+.-.+.-.+..|+...+-..+.||       |    -+.+|.+..+++.+..+.....                     
T Consensus        74 GSsF~ilQ~~sS~~~G~~SD~yGRk-------p----vll~c~~~va~s~ll~~~S~~F---------------------  121 (451)
T KOG2615|consen   74 GSSFSILQFISSPLWGCLSDRYGRK-------P----VLLACLIGVALSYLLWALSRNF---------------------  121 (451)
T ss_pred             hhHHHHHHHHhhhhhhhhhhhhCch-------H----HHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            3334455556667666654444333       2    3667777777776665443221                     


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 011824          343 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS  405 (476)
Q Consensus       343 s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~  405 (476)
                        ..++..-++.|+..-.++++ -+.+.+.++++.|++.|+....+.++|..+|+++++....
T Consensus       122 --~afv~aR~l~Gi~kgnl~v~-rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  122 --AAFVLARFLGGIFKGNLSVI-RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             --HHHHHHHHhhhhccCchHHH-HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence              12223344445544444432 4677888999999999999999999999999999887654

>PF13347 MFS_2: MFS/sugar transport protein

Probab=85.48  E-value=5.7  Score=41.18  Aligned_cols=117  Identities=21%  Similarity=0.254  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcCC---CCC-CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchh
Q 011824          268 LSIFLILSLYYSTFVPLCRRITGH---PRG-ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLS  343 (476)
Q Consensus       268 ~~ill~~pl~~~~~~p~~~~~~~~---~~~-~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s  343 (476)
                      -.+++..++.|.+..|+.-....+   +.| .+|  -+.+|.++.+++++......-        ++.      ... ..
T Consensus        40 g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp--~~l~g~i~~~~~~~llf~~~p--------~~~------~~~-~~  102 (428)
T PF13347_consen   40 GLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRP--WILIGAILLALSFFLLFSPPP--------AGL------SFT-AK  102 (428)
T ss_pred             HHHHHHHHHhhhhcCCcEEEEEeeecccccccce--EeehhhHHHHHHHHHhhcccc--------chh------hhh-hH
Confidence            345566677777777754322110   000 122  356788888887776653310        000      011 45


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhhHHHHHHHHHHHhHHHHHHHHHHHH
Q 011824          344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP-DAMKSIGSAYAALAGGLGCFAASILNS  401 (476)
Q Consensus       344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP-~~~kg~~~gl~~l~~a~g~~l~~~l~~  401 (476)
                      ..|+...|++..++--+....-.+...+.+| ++.|....+.-.+...+|..+.+.+..
T Consensus       103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~  161 (428)
T PF13347_consen  103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAP  161 (428)
T ss_pred             HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            6788888999999999999999999999998 468888888887878888866555544

>PHA03049 IMV membrane protein; Provisional

Probab=84.89  E-value=1.5  Score=32.52  Aligned_cols=41  Identities=15%  Similarity=0.233  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhccccccccccCCCccccccc-cc
Q 011824          431 YWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMEN-KL  471 (476)
Q Consensus       431 f~lla~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~  471 (476)
                      ..+.-.++++.+++|.+..|+-...+.....+.+|++|| |+
T Consensus         6 ~l~iICVaIi~lIvYgiYnkk~~~q~~~p~~e~ye~~e~~kT   47 (68)
T PHA03049          6 ILVIICVVIIGLIVYGIYNKKTTTSQNPPSQEKYEKMEDLKT   47 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccCCCCCChhhccCchhhhh
Confidence            344455666777888887777666666666788899998 54

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=84.71  E-value=16  Score=37.92  Aligned_cols=82  Identities=12%  Similarity=0.046  Sum_probs=54.0

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011824          295 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP  374 (476)
Q Consensus       295 ~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP  374 (476)
                      .+-..|+.+..+++++|+++.++.+                       ++++-+...++.+++--+.-.+-+.+....-+
T Consensus        86 v~y~~Ri~~~~~l~~~g~l~va~~~-----------------------~v~~~l~Gv~las~ssg~GE~tfL~lt~~y~~  142 (402)
T PF02487_consen   86 VPYWIRILICVALSAAGMLLVAFSP-----------------------SVWVRLLGVVLASLSSGLGEVTFLSLTHFYGK  142 (402)
T ss_pred             ccchHHHHHHHHHHHHHHhheeecc-----------------------chhHHHHHHHHHhhhhhhhHHHHHHHHHhcCc
Confidence            3456789999999999998765432                       22333445566655555555556666554432


Q ss_pred             hhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          375 DAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       375 ~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                           ..++.|...+|.+..+|+.......
T Consensus       143 -----~~l~~wssGTG~aGl~Ga~~y~~lT  167 (402)
T PF02487_consen  143 -----SSLSAWSSGTGGAGLVGALYYLGLT  167 (402)
T ss_pred             -----cccccccCCcChhhHHHHHHHHHHH
Confidence                 3578899999999999887765443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=84.47  E-value=3.3  Score=43.00  Aligned_cols=83  Identities=11%  Similarity=0.105  Sum_probs=59.9

Q ss_pred             HHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHhhccc------hhHHHH
Q 011824           33 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT-VGAIVAFTLVVYIQMEHG------WGSAFG  105 (476)
Q Consensus        33 ~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iN-iGa~i~~~l~~~l~~~~g------~~~~F~  105 (476)
                      .++..+-++..|.+-.....++.+..|++.      |.++=.+|....+ +|..+|.+++|++-|++|      |...|.
T Consensus       305 ~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~  378 (400)
T PF03825_consen  305 LLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFL  378 (400)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence            334445788888888888899998887644      4445555555443 899999999999988765      445667


Q ss_pred             HHHHHHHHHHHHHHhh
Q 011824          106 ALAIAMGISNMLFFIG  121 (476)
Q Consensus       106 i~~~~~~i~~i~f~~~  121 (476)
                      ++++..++..++|++.
T Consensus       379 v~a~~~~~~~~~f~~~  394 (400)
T PF03825_consen  379 VFAVMALVILVLFVIL  394 (400)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            7777777777777664

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=84.30  E-value=39  Score=35.86  Aligned_cols=101  Identities=13%  Similarity=0.138  Sum_probs=65.8

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHH
Q 011824          267 GLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYW  346 (476)
Q Consensus       267 ~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~w  346 (476)
                      .+..++..|++..+..++.||        .++..-.+|.++-.+.+++.                            .||
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk--------~~L~~~~~~~~l~~~~~~~~----------------------------~~~  115 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRK--------VVLLLPLFGTILPALCLLFQ----------------------------GYW  115 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhh--------hhHHHHHHHHHHhHHHHHHH----------------------------HHH
Confidence            557777888888887777665        24444444555444433332                            244


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          347 LLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       347 lip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      .+. ..=..-+-..+...+++++++.+.++.|+...|+...+.+.+..+++.+.+...
T Consensus       116 ~~~-~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~  172 (463)
T KOG2816|consen  116 FFL-LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLV  172 (463)
T ss_pred             Hhh-hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            332 111122334566778889999999999999999999988888888887776543

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=84.02  E-value=0.62  Score=49.96  Aligned_cols=87  Identities=17%  Similarity=0.215  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hhHHHHHHH
Q 011824           30 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALA  108 (476)
Q Consensus        30 ~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g-~~~~F~i~~  108 (476)
                      ..+..--+++++..|.+-.+....+.|..+.++      ..++|.+.....-+++++||.+++++.+..| |...|..++
T Consensus       389 ~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g  462 (509)
T KOG2504|consen  389 VGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCG  462 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcC
Confidence            334444445666677776666667777777643      7889999999999999999999999988877 999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 011824          109 IAMGISNMLFFIGT  122 (476)
Q Consensus       109 ~~~~i~~i~f~~~~  122 (476)
                      +.++++.+..+.-+
T Consensus       463 ~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  463 LCFLLSAVLLLILR  476 (509)
T ss_pred             hHHHHHHHHHHHhH
Confidence            99999987766544

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=83.99  E-value=7.8  Score=40.93  Aligned_cols=102  Identities=17%  Similarity=0.183  Sum_probs=73.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccc
Q 011824          342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP-DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ  420 (476)
Q Consensus       342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP-~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~  420 (476)
                      .+..|....|.+++++--++...--+......+ ++.|....+..+....+|+.+...+...+...-+   ++|      
T Consensus       110 ~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g---~~~------  180 (467)
T COG2211         110 GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFG---GGD------  180 (467)
T ss_pred             cchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCc------
Confidence            456777888999999999998888888887755 4667788899999999998887777654443221   000      


Q ss_pred             cCcCchhHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011824          421 NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSE  457 (476)
Q Consensus       421 ~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~~~~  457 (476)
                           +...|.....+++++..+.++++.+..|.|..
T Consensus       181 -----~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~  212 (467)
T COG2211         181 -----KALGYQGTALVLGVIGVILLLFCFFNVKERVV  212 (467)
T ss_pred             -----chhhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence                 11236666777888888888888888775544

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=83.81  E-value=0.28  Score=52.97  Aligned_cols=93  Identities=14%  Similarity=0.193  Sum_probs=2.6

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-----------
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-----------   96 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~-----------   96 (476)
                      -...|++|-++.++|..-+-+--.+++=|..++++      ..-+..++|.+..+|..+|.++++..-+           
T Consensus       140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~  213 (539)
T PF03137_consen  140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPD  213 (539)
T ss_dssp             ------------SSS-----------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhccccCCccceeeeecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCcccccc
Confidence            46788888888888887776665555555544322      4667888999999999999888775421           


Q ss_pred             ----------cc-chhHHHHHHHHHHHHHHHHHHhhcccee
Q 011824           97 ----------EH-GWGSAFGALAIAMGISNMLFFIGTPLYR  126 (476)
Q Consensus        97 ----------~~-g~~~~F~i~~~~~~i~~i~f~~~~~~~~  126 (476)
                                -+ .||++|+++++..++..+-++..-|.++
T Consensus       214 ~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp  254 (539)
T PF03137_consen  214 GVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLP  254 (539)
T ss_dssp             -----------------------------------------
T ss_pred             CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence                      02 3999999999988777766665444443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=83.50  E-value=13  Score=39.58  Aligned_cols=86  Identities=13%  Similarity=0.187  Sum_probs=62.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCccccc
Q 011824          342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQN  421 (476)
Q Consensus       342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  421 (476)
                      -+.++.+..-++.|++..-....+...+.+..+++.|+..+.+ ......+..++..+...+..          +|    
T Consensus       169 ~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~----------~W----  233 (521)
T KOG0255|consen  169 PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR----------DW----  233 (521)
T ss_pred             CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh----------hH----
Confidence            3456667778999999999999999999999999999999999 55555555555555554331          36    


Q ss_pred             CcCchhHHHHHHHHHHHHHHHHHHHHh
Q 011824          422 INTGRFDYLYWLLAVLSVINFCAFLYS  448 (476)
Q Consensus       422 ln~~~~~~~f~lla~l~~~~~~~~~~~  448 (476)
                            -+.++..++.+++.++++++.
T Consensus       234 ------r~~~~~~~~~~~~~~~~~~l~  254 (521)
T KOG0255|consen  234 ------RWLFWIISIPSGLFLLLWFLP  254 (521)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHcc
Confidence                  246666666666666654444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	476
2xut_A	524	Crystal Structure Of A Proton Dependent Oligopeptid		2e-08

>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 32  LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 91
            YT L++   G+ GI+P VSSF  DQFD+ +K       + F+ FY ++  G+  A   +
Sbjct: 112 FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLA---QKAFDMFYFTINFGSFFASLSM 168
Query: 92  VYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP 130
             +    G   AFG   + M ++ + F++G   Y H  P
Sbjct: 169 PLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPP 207

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	476
2xut_A	524	Proton/peptide symporter family protein; transport	2e-89
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  281 bits (721), Expect = 2e-89
 Identities = 89/444 (20%), Positives = 165/444 (37%), Gaps = 38/444 (8%)

Query: 28  QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 87
            +   YT L++   G+ GI+P VSSF  DQFD+     K+   + F+ FY ++  G+  A
Sbjct: 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ---SNKSLAQKAFDMFYFTINFGSFFA 164

Query: 88  FTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFR 147
              +  +    G   AFG   + M ++ + F++G   Y H  P          V+ +A  
Sbjct: 165 SLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALL 224

Query: 148 KRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAA------LELKEDVINPS 201
            +     +  L  +  + G  SA      I        L  A       +     +    
Sbjct: 225 TKVEGKGNIGL--VLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLER 282

Query: 202 PWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTC 261
             K      V+ V++++R++ + A       +  +  +  + QA  M   +         
Sbjct: 283 ARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDM---VKPQWFEPAM 339

Query: 262 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERY 321
           M     L + L++        P   R+       + L+++G G+A++ LS I  G  +  
Sbjct: 340 MQALNPLLVMLLIPFNNFVLYPAIERMGVKL---TALRKMGAGIAITGLSWIVVGTIQLM 396

Query: 322 RRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIG 381
               +               LS +W ++ Y L+   EV      LEF Y +AP AMK   
Sbjct: 397 MDGGSA--------------LSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTI 442

Query: 382 SAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVIN 441
            ++  L+  +G     + N  +KS T          +   ++   F   ++  A  +++ 
Sbjct: 443 MSFWTLSVTVGNLWVLLANVSVKSPTVT-----EQIVQTGMSVTAFQMFFF--AGFAILA 495

Query: 442 FCAFLYSAYRYKYRSEQKHGNDYE 465
              F   A  Y+ +   +     E
Sbjct: 496 AIVFALYARSYQMQDHYRQATGSE 519

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 4/104 (3%)

Query: 24  AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 83
           A  +    L+  + +   G   ++P VS+     +DE  +      D  F+ F   + +G
Sbjct: 103 ALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLG 158

Query: 84  AIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 127
           A +A  +V   Q   G+  AF   AI M I  ++++ G      
Sbjct: 159 AFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 5e-04
 Identities = 74/524 (14%), Positives = 137/524 (26%), Gaps = 198/524 (37%)

Query: 2   KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLY-ITGFG----AAGIRPCVSSFGAD 56
           K  +       ++ Q L    PAK         ++  + G G    A             
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAK-------NVLIDGVLGSGKTWVAL------------ 168

Query: 57  QFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 116
              +    YK      F  F+L++                     +      + + +   
Sbjct: 169 ---DVCLSYKVQCKMDFKIFWLNL--------------------KNCNSPETV-LEMLQK 204

Query: 117 LFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRK--RHAAFSSSELIGLYEVPGKHSAIKGS 174
           L +   P +  R    S +      + A  R+  +   + +  L+               
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV--------------- 249

Query: 175 GKIAHTDDFRCLDKAALELKEDVINPSPWKL----CTVTQVEEVKTLV--RLVPIPACTI 228
                      L         +V N   W      C        K L+  R         
Sbjct: 250 -----------LL--------NVQNAKAWNAFNLSC--------KILLTTR--------- 273

Query: 229 MLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFL-ILSLYYSTFVPLCRR 287
                +T+FL+ +     +++ H   L             S+ L  L         L R 
Sbjct: 274 --FKQVTDFLSAATTTHISLDHHSMTLTPDEV-------KSLLLKYLDCRPQD---LPRE 321

Query: 288 I-TGHPRGASQLQRVGIGLAVSILSVIWAGI------FERYRR------NYAISHGYE-- 332
           + T +P              +SI   I   I      ++ ++          I       
Sbjct: 322 VLTTNP------------RRLSI---IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 333 --------FSFLTAMPD--------LSAYWL-LIQYCLIGIAEVFCIVGLLEFLYEEAPD 375
                   F  L+  P         LS  W  +I+  ++ +        L+E   ++  +
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE---KQPKE 423

Query: 376 AMKSIGSAYAALAGGLGCFAASILN------SIIKSVTGNPKKGQPNWLAQNINTGRFD- 428
           +  SI S Y  L          + N      SI+     N  K   +    ++     D 
Sbjct: 424 STISIPSIYLEL-------KVKLENEYALHRSIVDHY--NIPKTFDSD---DLIPPYLDQ 471

Query: 429 YLYWLLAV-LSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKL 471
           Y Y  +   L  I       + +R  +        D+  +E K+
Sbjct: 472 YFYSHIGHHLKNIEH-PERMTLFRMVFL-------DFRFLEQKI 507

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	476
2xut_A	524	Proton/peptide symporter family protein; transport	99.88
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.83
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.36
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.01
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.79
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.7
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.31
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.15
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.09
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	97.96
2xut_A	524	Proton/peptide symporter family protein; transport	97.59
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.52
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	96.0
2cfq_A	417	Lactose permease; transport, transport mechanism,	94.68

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.88  E-value=3.1e-23  Score=218.89  Aligned_cols=390  Identities=22%  Similarity=0.332  Sum_probs=235.3

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  107 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~  107 (476)
                      +...++++..+.++|.|...|+..++++|++++++.   ......|++++.+.++|.++++.+++++.+..||+..|.+.
T Consensus       108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r---~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~  184 (524)
T 2xut_A          108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK---SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIP  184 (524)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT---THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            567788899999999999999999999999986542   23467889999999999999999999999889999999999


Q ss_pred             HHHHHHHHHHHHhhccceeecCCCCChhhHHHHHHHHHHHhhccccCCcccc---------cccccCCCCccccCCcccc
Q 011824          108 AIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELI---------GLYEVPGKHSAIKGSGKIA  178 (476)
Q Consensus       108 ~~~~~i~~i~f~~~~~~~~~~~p~~~pl~~~~~v~~~a~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~  178 (476)
                      ++..+++++.++..++.+++++|++++..+..+.+..+.+++....+. ...         ..+.....    .....+.
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~  259 (524)
T 2xut_A          185 GVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGN-IGLVLALIGGVSAAYALVNI----PTLGIVA  259 (524)
T ss_dssp             HHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHH-HHHHHHHHHHHHHHHTGGGT----TTTCSSH
T ss_pred             HHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCc-cchhhhhhhhhhhhhhhccc----chhhhhh
Confidence            998888877776665555444444333333223332222221110000 000         00000000    0000000


Q ss_pred             cCCchhhhhHhhhhhccccCCCCCC-------ccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhhhcccc
Q 011824          179 HTDDFRCLDKAALELKEDVINPSPW-------KLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH  251 (476)
Q Consensus       179 ~~~~~~~l~~a~~~~~~~~~~~~~~-------~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~~m~~~  251 (476)
                      ......+....+.  .     ..+|       +.++..+.++.|+.+..+++++...+++..+.|..+.+..|...++.+
T Consensus       260 ~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (524)
T 2xut_A          260 GLCCAMVLVMGFV--G-----AGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP  332 (524)
T ss_dssp             HHHHHHHHHHHHH--H-----TGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCC
T ss_pred             hhhhhhhhhhccc--c-----cchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCC
Confidence            0000000000000  0     0122       112223446677777788888888888888888888887776665543


Q ss_pred             ccCeeecCCcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC
Q 011824          252 MGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGY  331 (476)
Q Consensus       252 ~~g~~ip~~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~  331 (476)
                      .  + ++.+.+..++++..++..|+.+++..|..+|++++   +++.+++.+|+++.+++++..+..+..+.     +  
T Consensus       333 ~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----~--  399 (524)
T 2xut_A          333 Q--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLMMD-----G--  399 (524)
T ss_dssp             S--S-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTTTT-----T--
T ss_pred             e--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHhc-----C--
Confidence            2  1 35667788888899999999988877766664333   56778889999998888877655432110     0  


Q ss_pred             cccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCC
Q 011824          332 EFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPK  411 (476)
Q Consensus       332 ~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~  411 (476)
                            ... .+.+|+++.+++.++++.+..|...+++.+.+|+++||..+|++.....+|+.+++.+.+.+...+    
T Consensus       400 ------~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~----  468 (524)
T 2xut_A          400 ------GSA-LSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPT----  468 (524)
T ss_dssp             ------TCC-CCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCH----
T ss_pred             ------CCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccc----
Confidence                  112 567888999999999999999999999999999999999999999999999999999987654211    


Q ss_pred             CCCCCcccc-cCcCchhHHHHHHHHHHHHHHHHHHHHhhccccccccccC
Q 011824          412 KGQPNWLAQ-NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKH  460 (476)
Q Consensus       412 ~~~~~~~~~-~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~~~~~~~  460 (476)
                        +.+|.++ +++.  ..+.|++.+++++++.++++.+.+++++++++++
T Consensus       469 --~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  514 (524)
T 2xut_A          469 --VTEQIVQTGMSV--TAFQMFFFAGFAILAAIVFALYARSYQMQDHYRQ  514 (524)
T ss_dssp             --HHHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC--------------
T ss_pred             --cccccccccccc--cccHHHHHHHHHHHHHHHHHHHHHHhccchhhhh
Confidence              0124321 1221  1223778888999988888888887776654433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.83  E-value=4.6e-19  Score=185.17  Aligned_cols=367  Identities=17%  Similarity=0.177  Sum_probs=232.1

Q ss_pred             chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824           27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA  106 (476)
Q Consensus        27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i  106 (476)
                      .+...++++..+.++|.|...|...++++|.+++++.+    |..++++++.+.++|..+++.+++++.++.||++.|.+
T Consensus       106 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~  181 (491)
T 4aps_A          106 FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSL  181 (491)
T ss_dssp             CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            35667888999999999999999999999999875532    67899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccceeecC--CCCCh--hhHHHHHHHHHHHhhccccC--CcccccccccCCCCccccCCcccccC
Q 011824          107 LAIAMGISNMLFFIGTPLYRHRL--PGGSP--LTRVAQVLVAAFRKRHAAFS--SSELIGLYEVPGKHSAIKGSGKIAHT  180 (476)
Q Consensus       107 ~~~~~~i~~i~f~~~~~~~~~~~--p~~~p--l~~~~~v~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (476)
                      +++..+++++.++..++.+..++  +..++  ..+..+....    ...-.-  ..........+..        ...+.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~l~~~~~~~~~~~~~~~~--------~~~~~  249 (491)
T 4aps_A          182 AAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVK----VSLAVAGFIAIIVVMNLVGWN--------SLPAY  249 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHH----CCCCCHHHHHHHHHHHHHSSC--------CTTHH
T ss_pred             HHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHH----HHHHHHHHHHHHHHHHhccCc--------ccccc
Confidence            98888888777665544333211  11111  1111110000    000000  0000000000000        00000


Q ss_pred             Cc-hhhhhHhhhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhhh-ccccccCeeec
Q 011824          181 DD-FRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHMGKLKLP  258 (476)
Q Consensus       181 ~~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~~-m~~~~~g~~ip  258 (476)
                      .. ..............    ..|+... ...+++++..+.+++++...+++..+.+..+.+..+..+ .+.+    ..+
T Consensus       250 ~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  320 (491)
T 4aps_A          250 INLLTIVAIAIPVFYFA----WMISSVK-VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFP  320 (491)
T ss_dssp             HHHHHHHHHHHHHHHHH----HHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSC
T ss_pred             hhhhhHHHHHHHHHHHH----HHhhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccC
Confidence            00 00000000000000    0010000 112456667777888888899999999988877666543 3332    256


Q ss_pred             CCcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCC
Q 011824          259 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTA  338 (476)
Q Consensus       259 ~~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~  338 (476)
                      .+.+..++.+..++..|+..++..++.||.      +....++.+|+++.+++++..+.......         +    +
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~----~  381 (491)
T 4aps_A          321 VSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ------PSSPTKFAVGLMFAGLSFLLMAIPGALYG---------T----S  381 (491)
T ss_dssp             SGGGTTHHHHHHHHHHHHHHHHHHHTTTC---------CHHHHHHHHHHHHHHHTTTHHHHHHCC---------C----C
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHHHhccC------CCchHHHHHHHHHHHHHHHHHHHHHHhcC---------C----C
Confidence            778889999999999999988766554432      56678899999999999887766653210         0    1


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcc
Q 011824          339 MPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWL  418 (476)
Q Consensus       339 ~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~  418 (476)
                      .+ .+.+|+++.+++.++++.+..|...+++.+..|++.||.++|++.....+|..+++.+..++....           
T Consensus       382 ~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~-----------  449 (491)
T 4aps_A          382 GK-VSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS-----------  449 (491)
T ss_dssp             TT-CCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSS-----------
T ss_pred             CC-ccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------
Confidence            12 567888999999999999999999999999999999999999999999999999998876654211           


Q ss_pred             cccCcCchhHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011824          419 AQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSE  457 (476)
Q Consensus       419 ~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~~~~  457 (476)
                              ....|+++++++++..++++...++.+++.+
T Consensus       450 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (491)
T 4aps_A          450 --------EVAYFSYFGLGSVVLGIVLVFLSKRIQGLMQ  480 (491)
T ss_dssp             --------TTHHHHHTHHHHHHHHHHHHHC---------
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                    1246777888888888888777776665533

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.36  E-value=3.7e-11  Score=123.12  Aligned_cols=313  Identities=12%  Similarity=0.066  Sum_probs=173.7

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hhHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGA  106 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g-~~~~F~i  106 (476)
                      +...++++..+.++|.|...|...++++|.+++++      |.+++.++..+.++|.++++.+++++.+..| |+..|.+
T Consensus       118 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~  191 (451)
T 1pw4_A          118 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM  191 (451)
T ss_dssp             SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred             cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            45678888999999999999999999999997532      7889999999999999999999999878888 9999999


Q ss_pred             HHHHHHHHHHHHHhhccceeecCCCCChhhHHHHHHHHHHHhhccccCCcccccccccCCCCccccCCcccccCCchhhh
Q 011824          107 LAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL  186 (476)
Q Consensus       107 ~~~~~~i~~i~f~~~~~~~~~~~p~~~pl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  186 (476)
                      .++..++..++.+...+    ++|+...               .   +....   ...+.++       ..         
T Consensus       192 ~~~~~~~~~~~~~~~~~----~~~~~~~---------------~---~~~~~---~~~~~~~-------~~---------  230 (451)
T 1pw4_A          192 PAFCAILVALFAFAMMR----DTPQSCG---------------L---PPIEE---YKNDYPD-------DY---------  230 (451)
T ss_dssp             HHHHHHHHHHHHHHHCC----CSSTTTC---------------C---CSCTT---TCCC---------------------
T ss_pred             HHHHHHHHHHHHHhhcc----CCHhhcC---------------C---CChhh---hcccccc-------cc---------
Confidence            88776665554433222    1111100               0   00000   0000000       00         


Q ss_pred             hHhhhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhhhccccccCeeecC---Cccc
Q 011824          187 DKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPV---TCMP  263 (476)
Q Consensus       187 ~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~~m~~~~~g~~ip~---~~~~  263 (476)
                      +. +. . .    ..++   ++....+..+-..+..+.+...+.+..+....+.+..   .+....   +.++   +.+.
T Consensus       231 ~~-~~-~-~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---g~~~~~~~~~~  294 (451)
T 1pw4_A          231 NE-KA-E-Q----ELTA---KQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPT---YLKEVK---HFALDKSSWAY  294 (451)
T ss_dssp             ---------------CC---THHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH---HBTTBS---CCCHHHHHHHH
T ss_pred             hh-hh-h-c----cccc---ccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhc---CCCHHHHHHHH
Confidence            00 00 0 0    0000   0000001100011222222222222222222222221   111111   1222   2334


Q ss_pred             chhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhhcCCcccccCCCcch
Q 011824          264 VFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSI-LSVIWAGIFERYRRNYAISHGYEFSFLTAMPDL  342 (476)
Q Consensus       264 ~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~-ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  342 (476)
                      .+..+..++..++..++.    +|..+     ...+.+.++.++.+ ++++.....                   + . .
T Consensus       295 ~~~~~~~~~~~~~~g~l~----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-------------------~-~-~  344 (451)
T 1pw4_A          295 FLYEYAGIPGTLLCGWMS----DKVFR-----GNRGATGVFFMTLVTIATIVYWMN-------------------P-A-G  344 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHH----HHTST-----TCHHHHHHHHHHHHHHHHHHTTSC-------------------C-T-T
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHhc-----CCchhHHHHHHHHHHHHHHHHHHh-------------------c-c-c
Confidence            444445555555544443    33200     11222334444433 333332111                   0 1 2


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHH-HHHHHHHHHHHhhhccCCCCCCCCCccccc
Q 011824          343 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGL-GCFAASILNSIIKSVTGNPKKGQPNWLAQN  421 (476)
Q Consensus       343 s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~-g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  421 (476)
                      +.++.+...++.+++.....+....++.+..|++.+|..+|++.....+ |..+++.+.+.+....        +|    
T Consensus       345 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~--------g~----  412 (451)
T 1pw4_A          345 NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF--------GW----  412 (451)
T ss_dssp             CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--------CS----
T ss_pred             CHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------Cc----
Confidence            4555666678888888888888899999999999999999999999998 9999998887654321        11    


Q ss_pred             CcCchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 011824          422 INTGRFDYLYWLLAVLSVINFCAFLYSAYR  451 (476)
Q Consensus       422 ln~~~~~~~f~lla~l~~~~~~~~~~~~~~  451 (476)
                            ...|++.++++++..++++...++
T Consensus       413 ------~~~~~~~~~~~~~~~~~~~~~~~~  436 (451)
T 1pw4_A          413 ------DGGFMVMIGGSILAVILLIVVMIG  436 (451)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence                  346677777777777766665443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.01  E-value=5e-08  Score=99.35  Aligned_cols=87  Identities=14%  Similarity=0.094  Sum_probs=72.1

Q ss_pred             chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-hccc------
Q 011824           27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHG------   99 (476)
Q Consensus        27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~-~~~g------   99 (476)
                      .+.+.++++..+.++|.|...|...++++|.+++++      |...++++..+.++|.++++.+.+++. +..+      
T Consensus       115 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~  188 (438)
T 3o7q_A          115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDV  188 (438)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHH
T ss_pred             ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence            467788999999999999999999999999998644      677889999999999999999999887 5554      


Q ss_pred             -------------------hhHHHHHHHHHHHHHHHHHH
Q 011824          100 -------------------WGSAFGALAIAMGISNMLFF  119 (476)
Q Consensus       100 -------------------~~~~F~i~~~~~~i~~i~f~  119 (476)
                                         |++.|.+.++..++..+.++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  227 (438)
T 3o7q_A          189 LDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM  227 (438)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence                               89999877666555544443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.79  E-value=2.9e-09  Score=106.57  Aligned_cols=83  Identities=11%  Similarity=0.179  Sum_probs=71.9

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  107 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~  107 (476)
                      +...++++..+.++|.|...|...+++.|.+++++      |.+.+.++..+.++|..+++.+.+++.++.||+..|.+.
T Consensus        87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  160 (375)
T 2gfp_A           87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL  160 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence            56677888889999999999999999999997643      678899999999999999999999998888999999988


Q ss_pred             HHHHHHHHH
Q 011824          108 AIAMGISNM  116 (476)
Q Consensus       108 ~~~~~i~~i  116 (476)
                      ++..++..+
T Consensus       161 ~~~~~~~~~  169 (375)
T 2gfp_A          161 LVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHH
Confidence            777665543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.70  E-value=3.5e-07  Score=94.69  Aligned_cols=81  Identities=14%  Similarity=0.211  Sum_probs=62.6

Q ss_pred             cchhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc--------
Q 011824           26 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME--------   97 (476)
Q Consensus        26 ~~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~--------   97 (476)
                      ..+...++++..+.++|.|+.-+....+++|..+++.      |.....++..+..+|.+++..+...+...        
T Consensus       123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  196 (491)
T 4gc0_A          123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNT  196 (491)
T ss_dssp             GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccc
Confidence            3577889999999999999999999999999987532      67788888999999999988877666433        


Q ss_pred             cchhHHHHHHHHHHH
Q 011824           98 HGWGSAFGALAIAMG  112 (476)
Q Consensus        98 ~g~~~~F~i~~~~~~  112 (476)
                      .+|+..+.+..+..+
T Consensus       197 ~~~~~~~~~~~~~~~  211 (491)
T 4gc0_A          197 DGWRYMFASECIPAL  211 (491)
T ss_dssp             THHHHHHHTTHHHHH
T ss_pred             hhhHHHhhhhhhhhh
Confidence            345666655544433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.31  E-value=2.1e-06  Score=87.54  Aligned_cols=85  Identities=13%  Similarity=0.106  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH-HHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCc
Q 011824          345 YWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY-AALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN  423 (476)
Q Consensus       345 ~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl-~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln  423 (476)
                      ++++...++.+++.....+....++.+..|++.||..+|+ +....++|..+++.+.+.+....                
T Consensus       313 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~----------------  376 (417)
T 2cfq_A          313 LEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI----------------  376 (417)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc----------------
Confidence            4444455666777666667778899999999999999988 46777788888887776543211                


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHH
Q 011824          424 TGRFDYLYWLLAVLSVINFCAFLY  447 (476)
Q Consensus       424 ~~~~~~~f~lla~l~~~~~~~~~~  447 (476)
                        .....|.+.++++++..++++.
T Consensus       377 --g~~~~f~~~~~~~l~~~~~~~~  398 (417)
T 2cfq_A          377 --GFQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHTT
T ss_pred             --CcHHHHHHHHHHHHHHHHHHHh
Confidence              0123566677777776665543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.15  E-value=7.5e-05  Score=75.58  Aligned_cols=113  Identities=12%  Similarity=0.030  Sum_probs=86.0

Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824          261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  340 (476)
Q Consensus       261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  340 (476)
                      ++.+...+...+..|+..++..+..+|           +-+.+|.++.+++.+.......                   .
T Consensus        65 ~~~~~~~~~~~i~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~-------------------~  114 (438)
T 3o7q_A           65 LIQSAFYFGYFIIPIPAGILMKKLSYK-----------AGIITGLFLYALGAALFWPAAE-------------------I  114 (438)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHHHH-------------------T
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHhccc-------------------c
Confidence            345555666666777766665444333           2467788887777766543221                   0


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                       .+.++++...++.|++.-...+....++.+..|++.|+..+|++....++|..+++.+...+.
T Consensus       115 -~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A          115 -MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             -TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             -ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             346677788899999999999999999999999999999999999999999999999887654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.09  E-value=7.9e-05  Score=76.89  Aligned_cols=142  Identities=14%  Similarity=0.093  Sum_probs=99.0

Q ss_pred             cccchhhHHHHHHHHHHHHHHhh-hhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 011824          261 CMPVFPGLSIFLILSLYYSTFVP-LCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM  339 (476)
Q Consensus       261 ~~~~in~~~ill~~pl~~~~~~p-~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~  339 (476)
                      ++.++..+...+..|+..++..+ +.||           +-+.+|.++.+++.+..++.                     
T Consensus        58 ~~~~~~~~~~~~~~~~~g~l~dr~~g~r-----------~~~~~~~~~~~~~~~~~~~~---------------------  105 (491)
T 4aps_A           58 SIMAIYASMVYLSGTIGGFVADRIIGAR-----------PAVFWGGVLIMLGHIVLALP---------------------  105 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSCHH-----------HHHHHHHHHHHHHHHHHHSC---------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccch-----------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence            45566666777777777766555 3333           23566777777666554321                     


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh--HHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCc
Q 011824          340 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM--KSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNW  417 (476)
Q Consensus       340 ~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~--kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~  417 (476)
                        .+.++++...++.|+++-...|....++.+..|++.  |+..++++.....+|..+++.+...+....        +|
T Consensus       106 --~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--------g~  175 (491)
T 4aps_A          106 --FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA--------GY  175 (491)
T ss_dssp             --CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------CH
T ss_pred             --hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh--------hH
Confidence              223456667889999999999999999999999988  778888899999999999998887654311        24


Q ss_pred             ccccCcCchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 011824          418 LAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY  454 (476)
Q Consensus       418 ~~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~  454 (476)
                                ...|++.+++.++..++++...+++..
T Consensus       176 ----------~~~f~~~~~~~~~~~~~~~~~~~~~~~  202 (491)
T 4aps_A          176 ----------HVAFSLAAIGMFIGLLVYYFGGKKTLD  202 (491)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHhCccccc
Confidence                      235566666677777776666555543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=97.96  E-value=0.00014  Score=73.78  Aligned_cols=113  Identities=10%  Similarity=-0.102  Sum_probs=83.1

Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824          261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  340 (476)
Q Consensus       261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  340 (476)
                      ++.++..+...+..|+..++..+..+|           +-+.+|.++.+++.+..++....    +              
T Consensus        66 ~~~~~~~~~~~~~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~~----~--------------  116 (451)
T 1pw4_A           66 FALSGISIAYGFSKFIMGSVSDRSNPR-----------VFLPAGLILAAAVMLFMGFVPWA----T--------------  116 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHCHHH----H--------------
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHhcCch-----------HHHHHHHHHHHHHHHHHHhhhhc----c--------------
Confidence            344555556666666666554443322           24667888888877776653210    0              


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824          341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  403 (476)
Q Consensus       341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~  403 (476)
                       .+.++++...++.|++.-...+....++.+..|++.|+..+|++....++|..+++.+....
T Consensus       117 -~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  178 (451)
T 1pw4_A          117 -SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG  178 (451)
T ss_dssp             -SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             -ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             23455677789999999999999999999999999999999999999999999998888654

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.59  E-value=0.00081  Score=69.88  Aligned_cols=141  Identities=14%  Similarity=0.064  Sum_probs=90.4

Q ss_pred             ccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcc
Q 011824          262 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD  341 (476)
Q Consensus       262 ~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  341 (476)
                      +.++..+..++..|+..++.    +|.      ....+-+.+|.++.+++.+..++..                      
T Consensus        59 ~~~~~~~~~~~~~~~~G~l~----dr~------~g~r~~~~~~~~~~~~~~~~~~~~~----------------------  106 (524)
T 2xut_A           59 VFHSFVIGVYFFPLLGGWIA----DRF------FGKYNTILWLSLIYCVGHAFLAIFE----------------------  106 (524)
T ss_dssp             HHHHHHHHHHHTHHHHHHHH----TTS------SCSHHHHHHHHHHHHHHHHHHHHTS----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHH------hcchHHHHHHHHHHHHHHHHHHHhc----------------------
Confidence            33444444555555555543    332      0222345667777776665544321                      


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH---HHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcc
Q 011824          342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY---AALAGGLGCFAASILNSIIKSVTGNPKKGQPNWL  418 (476)
Q Consensus       342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl---~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~  418 (476)
                      .+.++++...++.|+++-...|....++.+..|++.|+..+++   +.....+|..+++.+...+....        +| 
T Consensus       107 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--------g~-  177 (524)
T 2xut_A          107 HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF--------GA-  177 (524)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS--------CH-
T ss_pred             ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------cH-
Confidence            1456667778999999999999999999999999999876666   88888899988888776543211        23 


Q ss_pred             cccCcCchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 011824          419 AQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRY  452 (476)
Q Consensus       419 ~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y  452 (476)
                               ...|++.+++.++..++++...+++
T Consensus       178 ---------~~~f~~~~~~~~~~~~~~~~~~~~~  202 (524)
T 2xut_A          178 ---------AVAFGIPGVLMFVATVFFWLGRKRY  202 (524)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHHhcccc
Confidence                     2356666666666666555444433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.52  E-value=0.00037  Score=69.02  Aligned_cols=110  Identities=10%  Similarity=0.010  Sum_probs=80.9

Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824          261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  340 (476)
Q Consensus       261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  340 (476)
                      ++.++..+...+..|+..++.    +|.+++    .   -+.+|.++.+++.+..+..                      
T Consensus        39 ~~~~~~~~~~~~~~~~~g~l~----dr~g~r----~---~~~~~~~~~~~~~~~~~~~----------------------   85 (375)
T 2gfp_A           39 SVMGAYLLTYGVSQLFYGPIS----DRVGRR----P---VILVGMSIFMLATLVAVTT----------------------   85 (375)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHH----TTSCCC----C---CCHHHHHHHHHHHHHHHHH----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHhCCc----h---hHHHHHHHHHHHHHHHHHh----------------------
Confidence            344555555666666655554    443222    1   2446777777776665443                      


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                       .+.++++...++.+++.....+....++.+..|++.|+..+|++.....+|..+++.+.....
T Consensus        86 -~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  148 (375)
T 2gfp_A           86 -SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD  148 (375)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             -ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence             234566777899999999999999999999999999999999999999999999998887643

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=96.00  E-value=0.1  Score=53.08  Aligned_cols=63  Identities=16%  Similarity=0.067  Sum_probs=56.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                      -+.+.++..-++.|+|+-...+....++.+.+|++.|+..++++.....+|..++..+.....
T Consensus       124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~  186 (491)
T 4gc0_A          124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA  186 (491)
T ss_dssp             GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence            456677888899999999999999999999999999999999999999999999887776544

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=94.68  E-value=0.013  Score=59.05  Aligned_cols=84  Identities=12%  Similarity=0.088  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Q 011824           31 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI  109 (476)
Q Consensus        31 ~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~-fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~~~  109 (476)
                      .+.+...+.+++.+.+-+...++..|.++++      .|..++.+ +..+.++|++++|.+.+++.++.||...|.+.++
T Consensus       314 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~  387 (417)
T 2cfq_A          314 EVVILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGL  387 (417)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHH
Confidence            3444444455565655666677888888742      25666777 4667779999999999999888899999999888


Q ss_pred             HHHHHHHHHHh
Q 011824          110 AMGISNMLFFI  120 (476)
Q Consensus       110 ~~~i~~i~f~~  120 (476)
                      ..+++.++.+.
T Consensus       388 ~~l~~~~~~~~  398 (417)
T 2cfq_A          388 VALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            87777766544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	476
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.18
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.72
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.3
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	96.88

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=4.6e-10  Score=111.74  Aligned_cols=87  Identities=11%  Similarity=0.167  Sum_probs=70.0

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGA  106 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~-~g~~~~F~i  106 (476)
                      +...++++..+.++|.|..-|...++++|.+++++      |..+++++..+.++|.++++.+.+.+... .+|+..|.+
T Consensus       115 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~  188 (447)
T d1pw4a_         115 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM  188 (447)
T ss_dssp             SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhhhhHhhhhhcccccchh
Confidence            45677888889999999999999999999998632      78899999999999999999888776544 589999988


Q ss_pred             HHHHHHHHHHHHHh
Q 011824          107 LAIAMGISNMLFFI  120 (476)
Q Consensus       107 ~~~~~~i~~i~f~~  120 (476)
                      .++..++..++.+.
T Consensus       189 ~~~~~~~~~~~~~~  202 (447)
T d1pw4a_         189 PAFCAILVALFAFA  202 (447)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHH
Confidence            77766555544443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=2.6e-07  Score=89.02  Aligned_cols=93  Identities=15%  Similarity=0.116  Sum_probs=70.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH-HHhHHHHHHHHHHHHHhhhccCCCCCCCCCccccc
Q 011824          343 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAA-LAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQN  421 (476)
Q Consensus       343 s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~-l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  421 (476)
                      +.++.+...++.+++.-+..+....++.+..|++.||..+|+.+ +..++|..+++.+.+.+....+             
T Consensus       311 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-------------  377 (417)
T d1pv7a_         311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-------------  377 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------
Confidence            45666777899999999999999999999999999999999754 6677888888887765542111             


Q ss_pred             CcCchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011824          422 INTGRFDYLYWLLAVLSVINFCAFLYSAYRYK  453 (476)
Q Consensus       422 ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~  453 (476)
                           ....|++.++++++..++.++.-++-+
T Consensus       378 -----~~~~~~~~~~~~~~~~~~~~~~l~~~~  404 (417)
T d1pv7a_         378 -----FQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence                 123567777877777776666655443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=8.2e-06  Score=80.02  Aligned_cols=114  Identities=10%  Similarity=-0.106  Sum_probs=85.4

Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824          261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  340 (476)
Q Consensus       261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  340 (476)
                      ++.+...+...+..|+..++..+..+|           +-+.+|+++.+++.+..+.....                  .
T Consensus        63 ~~~s~~~~~~~~~~~~~G~l~Dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~~~------------------~  113 (447)
T d1pw4a_          63 FALSGISIAYGFSKFIMGSVSDRSNPR-----------VFLPAGLILAAAVMLFMGFVPWA------------------T  113 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHCHHH------------------H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCch-----------HHHHHHHHHHHHHHhhccccchh------------------h
Confidence            455556666667777766665444333           24667888888887776655431                  0


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824          341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  404 (476)
Q Consensus       341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~  404 (476)
                       .+.++++...++.++++-...+....++.+..|++.|+..+|++.....+|..+++.+.....
T Consensus       114 -~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~  176 (447)
T d1pw4a_         114 -SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM  176 (447)
T ss_dssp             -SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             -hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHh
Confidence             234556777899999999999999999999999999999999999999999999887776543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.00073  Score=63.80  Aligned_cols=87  Identities=11%  Similarity=0.067  Sum_probs=71.8

Q ss_pred             hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL-SVTVGAIVAFTLVVYIQMEHGWGSAFGA  106 (476)
Q Consensus        28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~-~iNiGa~i~~~l~~~l~~~~g~~~~F~i  106 (476)
                      +...+++...+.+++.|...|...++..|.++++.      |.+.+.+++. +..+|.++++.+.+++.++.||+..|.+
T Consensus       311 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~  384 (417)
T d1pv7a_         311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLV  384 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence            55667778888899999999999999999998633      6778887664 5569999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHh
Q 011824          107 LAIAMGISNMLFFI  120 (476)
Q Consensus       107 ~~~~~~i~~i~f~~  120 (476)
                      .++..++..++.++
T Consensus       385 ~~~~~~~~~~~~~~  398 (417)
T d1pv7a_         385 LGLVALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            88877766665554