Citrus Sinensis ID: 011831
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 476 | 2.2.26 [Sep-21-2011] | |||||||
| P94131 | 413 | Cis,cis-muconate transpor | yes | no | 0.346 | 0.399 | 0.268 | 0.0007 |
| >sp|P94131|MUCK_ACIAD Cis,cis-muconate transport protein OS=Acinetobacter sp. (strain ADP1) GN=mucK PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 10/175 (5%)
Query: 26 MERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTI 85
++ AD LL + FN + G L + G + R ++ I
Sbjct: 28 VDGADLMLLSYSLNSIKAEFNLSTVEAGMLGSFTLAGMAIGGIFGGWACDRFGRVRIVVI 87
Query: 86 GILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLS 145
IL ++ T +G +Q F+ G+ R GL + A + +A+ R G L
Sbjct: 88 SILTFSILTCGLGLTQSFIQFGVLRFFASLGLGSLYIACNTLMAEYVPTKYRTTVLGTLQ 147
Query: 146 LVGTMGGIGGGVLATIMAGHQFWGVP--GWRCAFILMATLSVLIAFLVLVFVVDP 198
T+G I +AT++AG W +P GWR F +A + VL+A L+ FV +P
Sbjct: 148 AGWTVGYI----VATLLAG---WLIPDHGWRVLF-YVAIIPVLMAVLMHFFVPEP 194
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Probable uptake of muconate. Acinetobacter sp. (strain ADP1) (taxid: 62977) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 476 | ||||||
| 297735205 | 517 | unnamed protein product [Vitis vinifera] | 0.976 | 0.899 | 0.785 | 0.0 | |
| 225430840 | 494 | PREDICTED: uncharacterized protein LOC10 | 0.976 | 0.941 | 0.785 | 0.0 | |
| 255568249 | 485 | carbohydrate transporter, putative [Rici | 0.981 | 0.962 | 0.794 | 0.0 | |
| 224096920 | 462 | predicted protein [Populus trichocarpa] | 0.960 | 0.989 | 0.774 | 0.0 | |
| 356496795 | 484 | PREDICTED: uncharacterized protein LOC10 | 0.951 | 0.935 | 0.763 | 0.0 | |
| 357483281 | 538 | hypothetical protein MTR_5g019490 [Medic | 0.974 | 0.862 | 0.729 | 0.0 | |
| 297802278 | 489 | predicted protein [Arabidopsis lyrata su | 0.945 | 0.920 | 0.737 | 0.0 | |
| 15234530 | 489 | major facilitator protein [Arabidopsis t | 0.947 | 0.922 | 0.730 | 0.0 | |
| 449461421 | 467 | PREDICTED: uncharacterized protein LOC10 | 0.974 | 0.993 | 0.724 | 0.0 | |
| 242047864 | 487 | hypothetical protein SORBIDRAFT_02g00634 | 0.970 | 0.948 | 0.681 | 0.0 |
| >gi|297735205|emb|CBI17567.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/470 (78%), Positives = 415/470 (88%), Gaps = 5/470 (1%)
Query: 6 RTRKVLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGL 65
+TRK+ GISLSL LINLA+IMERADENLLP+VYKEVSEAF+AGPS+LGYLTFIRNFVQGL
Sbjct: 52 KTRKIFGISLSLFLINLASIMERADENLLPAVYKEVSEAFSAGPSELGYLTFIRNFVQGL 111
Query: 66 SSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQ 125
+SPLAGVLVI++DRP VL +G +CWA STAAVGASQ ++ V WRAVNGFGLAIVIPALQ
Sbjct: 112 ASPLAGVLVISHDRPTVLAMGTVCWAISTAAVGASQQYMQVAFWRAVNGFGLAIVIPALQ 171
Query: 126 SFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSV 185
SFIADSYKD VRG GFG L+L+G++GGIGGGVLAT+MAG QFWG+PGWRCAFI+MATLS
Sbjct: 172 SFIADSYKDSVRGTGFGFLNLIGSLGGIGGGVLATVMAGQQFWGIPGWRCAFIMMATLSS 231
Query: 186 LIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTF 245
LI FLV +VVDPR+ + H +GEN DR+ L++K S SVWLESW ATKAVIKV TF
Sbjct: 232 LIGFLVFQYVVDPRRTINITHDSGENSDRNSLLDKSKASSVSVWLESWTATKAVIKVQTF 291
Query: 246 QIIVLQGIVGSLPWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRIS 305
QIIVLQG+VGSLPWTAMVFFTMWFELIGFDH+S+AALLS+FAIGCA+GS LGG++ADR+S
Sbjct: 292 QIIVLQGVVGSLPWTAMVFFTMWFELIGFDHNSSAALLSVFAIGCAMGSLLGGLIADRMS 351
Query: 306 QAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANG 365
Q YPHSGR+MCAQFSA MGIPFSWFLLT IPQSVS+++T+ TL LMGLTISWN TAAN
Sbjct: 352 QIYPHSGRIMCAQFSALMGIPFSWFLLTVIPQSVSSWFTFGTTLFLMGLTISWNGTAANA 411
Query: 366 PMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGYDSKAIDPVMGSPREAL 425
PMFAEVVP KHRTMIYAFDRAFEGSFSSFAAP+VGILSEKMFGYD K +DPV GS + A
Sbjct: 412 PMFAEVVPVKHRTMIYAFDRAFEGSFSSFAAPMVGILSEKMFGYDPKTVDPVSGSAQAAF 471
Query: 426 ALSRGLLSMMAVPFGLCCLFYTPLYKIFKRDRENARLASFKEATSKDEEM 475
ALSRGLLSMMAVPFGLCCLFYTPLY +F+RDRENAR+AS KE EEM
Sbjct: 472 ALSRGLLSMMAVPFGLCCLFYTPLYVVFRRDRENARIASLKE-----EEM 516
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430840|ref|XP_002273483.1| PREDICTED: uncharacterized protein LOC100254794 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/470 (78%), Positives = 415/470 (88%), Gaps = 5/470 (1%)
Query: 6 RTRKVLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGL 65
+TRK+ GISLSL LINLA+IMERADENLLP+VYKEVSEAF+AGPS+LGYLTFIRNFVQGL
Sbjct: 29 KTRKIFGISLSLFLINLASIMERADENLLPAVYKEVSEAFSAGPSELGYLTFIRNFVQGL 88
Query: 66 SSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQ 125
+SPLAGVLVI++DRP VL +G +CWA STAAVGASQ ++ V WRAVNGFGLAIVIPALQ
Sbjct: 89 ASPLAGVLVISHDRPTVLAMGTVCWAISTAAVGASQQYMQVAFWRAVNGFGLAIVIPALQ 148
Query: 126 SFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSV 185
SFIADSYKD VRG GFG L+L+G++GGIGGGVLAT+MAG QFWG+PGWRCAFI+MATLS
Sbjct: 149 SFIADSYKDSVRGTGFGFLNLIGSLGGIGGGVLATVMAGQQFWGIPGWRCAFIMMATLSS 208
Query: 186 LIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTF 245
LI FLV +VVDPR+ + H +GEN DR+ L++K S SVWLESW ATKAVIKV TF
Sbjct: 209 LIGFLVFQYVVDPRRTINITHDSGENSDRNSLLDKSKASSVSVWLESWTATKAVIKVQTF 268
Query: 246 QIIVLQGIVGSLPWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRIS 305
QIIVLQG+VGSLPWTAMVFFTMWFELIGFDH+S+AALLS+FAIGCA+GS LGG++ADR+S
Sbjct: 269 QIIVLQGVVGSLPWTAMVFFTMWFELIGFDHNSSAALLSVFAIGCAMGSLLGGLIADRMS 328
Query: 306 QAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANG 365
Q YPHSGR+MCAQFSA MGIPFSWFLLT IPQSVS+++T+ TL LMGLTISWN TAAN
Sbjct: 329 QIYPHSGRIMCAQFSALMGIPFSWFLLTVIPQSVSSWFTFGTTLFLMGLTISWNGTAANA 388
Query: 366 PMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGYDSKAIDPVMGSPREAL 425
PMFAEVVP KHRTMIYAFDRAFEGSFSSFAAP+VGILSEKMFGYD K +DPV GS + A
Sbjct: 389 PMFAEVVPVKHRTMIYAFDRAFEGSFSSFAAPMVGILSEKMFGYDPKTVDPVSGSAQAAF 448
Query: 426 ALSRGLLSMMAVPFGLCCLFYTPLYKIFKRDRENARLASFKEATSKDEEM 475
ALSRGLLSMMAVPFGLCCLFYTPLY +F+RDRENAR+AS KE EEM
Sbjct: 449 ALSRGLLSMMAVPFGLCCLFYTPLYVVFRRDRENARIASLKE-----EEM 493
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255568249|ref|XP_002525099.1| carbohydrate transporter, putative [Ricinus communis] gi|223535558|gb|EEF37226.1| carbohydrate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/467 (79%), Positives = 414/467 (88%)
Query: 2 YTFHRTRKVLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNF 61
+ HRTRK+ G+SLSLILINLAAIMERADENLLP+VYKEVSE FNAGPSDLGYLTFIRNF
Sbjct: 16 FALHRTRKIFGVSLSLILINLAAIMERADENLLPAVYKEVSETFNAGPSDLGYLTFIRNF 75
Query: 62 VQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVI 121
VQGLSSPLAGVLVINYDRP VL +G CWA STAAVGAS HFL V WR VNGFGLAIVI
Sbjct: 76 VQGLSSPLAGVLVINYDRPTVLAMGTFCWALSTAAVGASHHFLQVAFWRGVNGFGLAIVI 135
Query: 122 PALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMA 181
PALQSFIADSY +GVRGAGFGL++L+G +GGIGGGVLAT+MAG Q+WG+PGWRCAFI+MA
Sbjct: 136 PALQSFIADSYMEGVRGAGFGLVNLIGNLGGIGGGVLATVMAGQQYWGIPGWRCAFIMMA 195
Query: 182 TLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIK 241
TLS +I FLV +FV+DPRK S T E+F+RDEL+E+ ++S SSVW ESW A +AVIK
Sbjct: 196 TLSSIIGFLVFLFVIDPRKTISIPRDTRESFERDELIERSSSSASSVWTESWTAMQAVIK 255
Query: 242 VPTFQIIVLQGIVGSLPWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVA 301
V TFQIIVLQGIVGSLPWTAMVFF MWFELIGF H+STA LLSLFA+GCA+GS +GG++A
Sbjct: 256 VKTFQIIVLQGIVGSLPWTAMVFFAMWFELIGFSHNSTAFLLSLFAVGCALGSLIGGLIA 315
Query: 302 DRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNAT 361
DR+S YPHSGR+MCAQFSA MGIPFSWFLL IP SVS+Y+T+AVT+ +MGLTISWN T
Sbjct: 316 DRLSHTYPHSGRIMCAQFSALMGIPFSWFLLKEIPLSVSSYHTFAVTIFMMGLTISWNGT 375
Query: 362 AANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGYDSKAIDPVMGSP 421
AAN PMFAEVVP KHRTMIYAFDRAFEGS SSFAAPLVGILSEKMFGYDSK+IDPV GS
Sbjct: 376 AANAPMFAEVVPVKHRTMIYAFDRAFEGSLSSFAAPLVGILSEKMFGYDSKSIDPVKGSV 435
Query: 422 REALALSRGLLSMMAVPFGLCCLFYTPLYKIFKRDRENARLASFKEA 468
+EA ALS+GLLSMMAVPFGLCCLFYTPLYK F++DRENAR+AS KEA
Sbjct: 436 QEASALSKGLLSMMAVPFGLCCLFYTPLYKFFRQDRENARIASAKEA 482
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224096920|ref|XP_002310787.1| predicted protein [Populus trichocarpa] gi|222853690|gb|EEE91237.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/466 (77%), Positives = 405/466 (86%), Gaps = 9/466 (1%)
Query: 1 MYTFHRTRKVLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRN 60
M+ FHR RK+LG+SLS+ LIN+AAIMERADENLLP+VYKEVSEAFNAGPSDLGYLTFIRN
Sbjct: 1 MFAFHRGRKILGVSLSIFLINMAAIMERADENLLPAVYKEVSEAFNAGPSDLGYLTFIRN 60
Query: 61 FVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIV 120
FVQGLSSPLAG+LVIN+ RP VL +G LCWA STAAVGASQHF WRAVNGFGLAIV
Sbjct: 61 FVQGLSSPLAGILVINHARPTVLAMGTLCWALSTAAVGASQHFSQAAFWRAVNGFGLAIV 120
Query: 121 IPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILM 180
IPALQSFIADSYKDGVRG GFGLLS +G +GGIGGGVLAT+MAG Q+WGV GWR AFI+M
Sbjct: 121 IPALQSFIADSYKDGVRGTGFGLLSFIGNLGGIGGGVLATVMAGQQYWGVQGWRFAFIMM 180
Query: 181 ATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVI 240
A+LS+LI LV +FVVDPRK H ELVEKGN+ S+W ESW ATKAV+
Sbjct: 181 ASLSLLIGLLVFLFVVDPRKTIGVNH---------ELVEKGNSYELSIWTESWTATKAVM 231
Query: 241 KVPTFQIIVLQGIVGSLPWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVV 300
KV TFQIIVLQGIVGSLPWTAMVFFTMWFELIGF+H+ TAALLS FA+GC++GS LGG++
Sbjct: 232 KVKTFQIIVLQGIVGSLPWTAMVFFTMWFELIGFNHNKTAALLSFFAVGCSLGSLLGGII 291
Query: 301 ADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNA 360
ADR+S YPHSGR+MCAQFSAFMGIPFSWFLL IPQSVS+Y T+AVTL +MGLTISWN
Sbjct: 292 ADRMSHIYPHSGRIMCAQFSAFMGIPFSWFLLKVIPQSVSSYSTFAVTLFMMGLTISWNG 351
Query: 361 TAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGYDSKAIDPVMGS 420
TA N P+FAEVVP KHRTMIYA+DRAFEGSFSSFAAPLVGILSE+MFGYDSK++DP+ GS
Sbjct: 352 TAVNAPIFAEVVPVKHRTMIYAYDRAFEGSFSSFAAPLVGILSEQMFGYDSKSVDPIKGS 411
Query: 421 PREALALSRGLLSMMAVPFGLCCLFYTPLYKIFKRDRENARLASFK 466
REA ALS+GLLSMMA+PFGLCCLFYTPLY+ F++DRENAR+A K
Sbjct: 412 VREASALSKGLLSMMAIPFGLCCLFYTPLYRYFRQDRENARMAGSK 457
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356496795|ref|XP_003517251.1| PREDICTED: uncharacterized protein LOC100812646 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/470 (76%), Positives = 401/470 (85%), Gaps = 17/470 (3%)
Query: 6 RTRKVLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGL 65
+T ++ G+SLSLILINLAAIMERADENLLPSVYKEVSE FNAGPSDLGYLTF+RNFVQGL
Sbjct: 31 KTTQIFGVSLSLILINLAAIMERADENLLPSVYKEVSETFNAGPSDLGYLTFVRNFVQGL 90
Query: 66 SSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQ 125
SSPLAG+LVINYDRP +L +G CWA STAAVG FL V WRA+NGFGLAIVIPALQ
Sbjct: 91 SSPLAGILVINYDRPTILAMGTFCWALSTAAVGVCHDFLQVAFWRAINGFGLAIVIPALQ 150
Query: 126 SFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSV 185
SFIADSYKDGVRG GFGLLSLVG +GGIGGGVLAT+MAG QFWG+ GWRCAFILMATLS
Sbjct: 151 SFIADSYKDGVRGTGFGLLSLVGNLGGIGGGVLATVMAGQQFWGIQGWRCAFILMATLSA 210
Query: 186 LIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTF 245
LI FLVL++VVDPRK+ T RD N S +S+W++SW ATKAVIKV TF
Sbjct: 211 LIGFLVLLYVVDPRKRFPT--------TRD----ASNASAASIWIDSWAATKAVIKVKTF 258
Query: 246 QIIVLQGIVGSLPWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRIS 305
QIIVLQGI+GSLPWTAMVFFTMWFELIGFD++++A LLSLFAIGCA+GSF+GG +AD++S
Sbjct: 259 QIIVLQGIIGSLPWTAMVFFTMWFELIGFDNNTSATLLSLFAIGCAMGSFIGGSIADQLS 318
Query: 306 QAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANG 365
Q YPHS R MCAQFSAFMGIPFSWFLL IPQSVS++ ++VTL +MGLTISWN AAN
Sbjct: 319 QVYPHSARTMCAQFSAFMGIPFSWFLLKVIPQSVSSFPIFSVTLFIMGLTISWNGAAANA 378
Query: 366 PMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGYDSKAIDPVMGSPREAL 425
PMFAEVVP KHRTMIYAFDRAFEGSFSS AAPLVGILSEKMFGY+SK++DP+ GS EAL
Sbjct: 379 PMFAEVVPVKHRTMIYAFDRAFEGSFSSIAAPLVGILSEKMFGYNSKSVDPIKGSSPEAL 438
Query: 426 ALSRGLLSMMAVPFGLCCLFYTPLYKIFKRDRENARLASFKEATSKDEEM 475
ALS+GLLSMMAVPFGLCCL YTPLY IF+RDRENAR+ + KE EEM
Sbjct: 439 ALSKGLLSMMAVPFGLCCLCYTPLYYIFRRDRENARMLAVKE-----EEM 483
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357483281|ref|XP_003611927.1| hypothetical protein MTR_5g019490 [Medicago truncatula] gi|355513262|gb|AES94885.1| hypothetical protein MTR_5g019490 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/469 (72%), Positives = 403/469 (85%), Gaps = 5/469 (1%)
Query: 7 TRKVLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLS 66
T ++ G+SLSLILINLAAIMERADENLLP+VYKEVSEAF+AGPSDLGYLTFIRNFVQGLS
Sbjct: 74 TIQIYGVSLSLILINLAAIMERADENLLPAVYKEVSEAFHAGPSDLGYLTFIRNFVQGLS 133
Query: 67 SPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQS 126
SPLAG+LVINYDRP +L +G CWA STAAV A F V WRA+NGFGLAIVIPALQS
Sbjct: 134 SPLAGILVINYDRPTILAMGTFCWALSTAAVSACHDFKQVAFWRAINGFGLAIVIPALQS 193
Query: 127 FIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVL 186
FIADSY++GVRG GFG++S +GT+GGIGGGV+AT+MAG +FWG+ GWRCAF+LMA+LS
Sbjct: 194 FIADSYREGVRGVGFGVVSFIGTVGGIGGGVMATVMAGQKFWGIDGWRCAFVLMASLSAF 253
Query: 187 IAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQ 246
I LVL++V DPRK+ S E+ +RD+ + GN SV+S W SW ATK+VIKV TFQ
Sbjct: 254 IGILVLLYVDDPRKRFSPIQDASESSERDDSIYNGNASVTSTWRYSWAATKSVIKVQTFQ 313
Query: 247 IIVLQGIVGSLPWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQ 306
+IVLQGI+GSLPWTAMVFFTMWFELIGFD++++A LLSLFAIGCA+GS +GG +AD+++Q
Sbjct: 314 VIVLQGIIGSLPWTAMVFFTMWFELIGFDNNTSATLLSLFAIGCAMGSLIGGSIADQLTQ 373
Query: 307 AYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGP 366
YP+SGR+MCAQFSAFMGIPFSWFLL IPQSV+++ T+++TL MGLTISWN TAAN P
Sbjct: 374 IYPYSGRIMCAQFSAFMGIPFSWFLLRVIPQSVTSFLTFSITLFFMGLTISWNGTAANAP 433
Query: 367 MFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGYDSKAIDPVMGSPREALA 426
MF+EVVP KHRTMIYAFDRAFEGSFSS AAPLVGIL+EKMFGY+SK++DP+ GS EALA
Sbjct: 434 MFSEVVPVKHRTMIYAFDRAFEGSFSSVAAPLVGILAEKMFGYNSKSVDPIKGSSAEALA 493
Query: 427 LSRGLLSMMAVPFGLCCLFYTPLYKIFKRDRENARLASFKEATSKDEEM 475
LS+GLLSMMA+PFGLCCL YTPLY IFK+DRENAR+ + KE EEM
Sbjct: 494 LSKGLLSMMAIPFGLCCLCYTPLYYIFKKDRENARMQALKE-----EEM 537
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297802278|ref|XP_002869023.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297314859|gb|EFH45282.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/464 (73%), Positives = 397/464 (85%), Gaps = 14/464 (3%)
Query: 6 RTRKVLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGL 65
+T LG+S+SLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTF+RNFVQGL
Sbjct: 34 KTGTFLGVSISLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFVRNFVQGL 93
Query: 66 SSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQ 125
+SPLAGVLVI YDRP VL IG CWA STAAVGAS +F+ V +WRAVNGFGLAIVIPALQ
Sbjct: 94 ASPLAGVLVITYDRPIVLAIGTFCWALSTAAVGASSYFIQVALWRAVNGFGLAIVIPALQ 153
Query: 126 SFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSV 185
SFIADSY+DG RGAGFGLL+L+GT+GGIGGGV+AT+MAG +FWG+PGWRCAFI+MATLS
Sbjct: 154 SFIADSYRDGARGAGFGLLNLIGTIGGIGGGVVATVMAGSEFWGIPGWRCAFIMMATLSA 213
Query: 186 LIAFLVLVFVVDPRKKASTFHGTGENFDRDEL-VEKGNTSVSSVWLESWMATKAVIKVPT 244
+I LV +FVVDPRK N +R+EL V K N+ +SVW +SW A K+V+KV T
Sbjct: 214 VIGLLVFLFVVDPRK----------NIEREELMVHKMNS--TSVWNDSWAAAKSVVKVST 261
Query: 245 FQIIVLQGIVGSLPWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRI 304
FQIIV QGI+GS PWTAMVFFTMWFELIGFDH+ TAALL +FA G A+G+ +GG++AD++
Sbjct: 262 FQIIVAQGIIGSFPWTAMVFFTMWFELIGFDHNQTAALLGVFATGGAIGTLMGGIIADKM 321
Query: 305 SQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAAN 364
S+ YP+SGRVMCAQFSAFMGIPFS LL IPQ+ S+Y +++TL LMGLTI+W +A N
Sbjct: 322 SRIYPNSGRVMCAQFSAFMGIPFSIILLKVIPQNTSSYTIFSITLFLMGLTITWCGSAVN 381
Query: 365 GPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGYDSKAIDPVMGSP-RE 423
PMFAEVVP +HRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGYDS+ IDP+ GS RE
Sbjct: 382 APMFAEVVPPRHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGYDSRGIDPLKGSSVRE 441
Query: 424 ALALSRGLLSMMAVPFGLCCLFYTPLYKIFKRDRENARLASFKE 467
A ALS+GLLSMMAVPFGLCCL YTPL+ +F++DRENA++AS KE
Sbjct: 442 ADALSKGLLSMMAVPFGLCCLCYTPLHFVFQKDRENAKIASSKE 485
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15234530|ref|NP_195397.1| major facilitator protein [Arabidopsis thaliana] gi|2464901|emb|CAB16804.1| putative protein [Arabidopsis thaliana] gi|7270628|emb|CAB80345.1| putative protein [Arabidopsis thaliana] gi|17380886|gb|AAL36255.1| unknown protein [Arabidopsis thaliana] gi|21689671|gb|AAM67457.1| unknown protein [Arabidopsis thaliana] gi|332661301|gb|AEE86701.1| major facilitator protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/463 (73%), Positives = 393/463 (84%), Gaps = 12/463 (2%)
Query: 6 RTRKVLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGL 65
+T LG+S+SLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTF+RNFVQGL
Sbjct: 34 KTGTFLGVSISLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFVRNFVQGL 93
Query: 66 SSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQ 125
+SPLAGVLVI YDRP VL IG CWA STAAVGAS +F+ V +WRAVNGFGLAIVIPALQ
Sbjct: 94 ASPLAGVLVITYDRPIVLAIGTFCWALSTAAVGASSYFIQVALWRAVNGFGLAIVIPALQ 153
Query: 126 SFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSV 185
SFIADSYKDG RGAGFG+L+L+GT+GGIGGGV+AT+MAG +FWG+PGWRCAFI+MA LS
Sbjct: 154 SFIADSYKDGARGAGFGMLNLIGTIGGIGGGVVATVMAGSEFWGIPGWRCAFIMMAALSA 213
Query: 186 LIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTF 245
+I LV +FVVDPRK N +R+EL+ S +SVW +S A K+V+KV TF
Sbjct: 214 VIGLLVFLFVVDPRK----------NIEREELMAHKMNS-NSVWNDSLAAAKSVVKVSTF 262
Query: 246 QIIVLQGIVGSLPWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRIS 305
QIIV QGI+GS PWTAMVFFTMWFELIGFDH+ TAALL +FA G A+G+ +GG++AD++S
Sbjct: 263 QIIVAQGIIGSFPWTAMVFFTMWFELIGFDHNQTAALLGVFATGGAIGTLMGGIIADKMS 322
Query: 306 QAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANG 365
+ YP+SGRVMCAQFSAFMGIPFS LL IPQS S+Y +++TL LMGLTI+W +A N
Sbjct: 323 RIYPNSGRVMCAQFSAFMGIPFSIILLKVIPQSTSSYSIFSITLFLMGLTITWCGSAVNA 382
Query: 366 PMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGYDSKAIDPVMGSP-REA 424
PMFAEVVP +HRTMIYAFDRAFEGSFSSFAAPLVGILSEK+FGYDS+ IDP+ GS REA
Sbjct: 383 PMFAEVVPPRHRTMIYAFDRAFEGSFSSFAAPLVGILSEKLFGYDSRGIDPLKGSSVREA 442
Query: 425 LALSRGLLSMMAVPFGLCCLFYTPLYKIFKRDRENARLASFKE 467
ALS+GLLSMMAVPFGLCCL YTPL+ +F++DRENA++AS KE
Sbjct: 443 DALSKGLLSMMAVPFGLCCLCYTPLHFVFQKDRENAKIASSKE 485
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449461421|ref|XP_004148440.1| PREDICTED: uncharacterized protein LOC101209309 [Cucumis sativus] gi|449514744|ref|XP_004164467.1| PREDICTED: uncharacterized protein LOC101231698 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/469 (72%), Positives = 384/469 (81%), Gaps = 5/469 (1%)
Query: 6 RTRKVLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGL 65
+ RK+ G+S+SLILINLAAIMERADENLLPSVYKEVSE FNA PSDLGYLTFIRNFVQGL
Sbjct: 2 KNRKIYGVSISLILINLAAIMERADENLLPSVYKEVSETFNASPSDLGYLTFIRNFVQGL 61
Query: 66 SSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQ 125
SPLAG+LV++YDRP VL +G CWA STAAVG S F V WRAVNGFGLAIVIPALQ
Sbjct: 62 CSPLAGILVLSYDRPKVLAMGTFCWALSTAAVGISLEFKQVAFWRAVNGFGLAIVIPALQ 121
Query: 126 SFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSV 185
SFIADSY DGVRG GFGLLSL+G++GGIGGGVLAT+MAG Q++GV GWRCAFILMATLS
Sbjct: 122 SFIADSYMDGVRGMGFGLLSLIGSLGGIGGGVLATVMAGQQYFGVEGWRCAFILMATLSA 181
Query: 186 LIAFLVLVFVVDPRKKASTFHGTGENF-DRDELVEKGNTSVSSVWLESWMATKAVIKVPT 244
+I LV +FVVDPRK + + + + RD L+++ + SS+W ESW A KAV+KV T
Sbjct: 182 IIGILVYMFVVDPRKTINNIQESSDRYLRRDNLIDRTLPNSSSIWFESWSAMKAVMKVHT 241
Query: 245 FQIIVLQGIVGSLPWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRI 304
FQIIVLQGIVGSLPWTAMVFFTMWFELIGF H+ TA LLSLFA+GCA+GS LGG++ADR+
Sbjct: 242 FQIIVLQGIVGSLPWTAMVFFTMWFELIGFSHNGTAVLLSLFAVGCALGSLLGGLIADRL 301
Query: 305 SQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAAN 364
S+ YPHSGR+MCAQFSA MGIPFS LL IPQSV + + VTL LMGLTISWN TA N
Sbjct: 302 SKIYPHSGRIMCAQFSASMGIPFSLLLLRVIPQSVDSLLIFGVTLFLMGLTISWNGTAVN 361
Query: 365 GPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGYDSKAIDPVMGSPREA 424
P+FAEVVP KHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGYD D S +A
Sbjct: 362 APIFAEVVPIKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGYD----DTAGASLLKA 417
Query: 425 LALSRGLLSMMAVPFGLCCLFYTPLYKIFKRDRENARLASFKEATSKDE 473
LALS+GLL+MM VPFG+CCL YTPLYK F+ DRENAR+ K S D+
Sbjct: 418 LALSKGLLTMMTVPFGVCCLCYTPLYKYFRLDRENARMQGSKGTKSIDD 466
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242047864|ref|XP_002461678.1| hypothetical protein SORBIDRAFT_02g006340 [Sorghum bicolor] gi|241925055|gb|EER98199.1| hypothetical protein SORBIDRAFT_02g006340 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/462 (68%), Positives = 379/462 (82%)
Query: 6 RTRKVLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGL 65
RT+K+LG S+SLILINLA+IMERADENLLP+VYKEVS AFNAGP+DLGYLTF NF++ +
Sbjct: 22 RTKKILGFSVSLILINLASIMERADENLLPAVYKEVSAAFNAGPTDLGYLTFAMNFLKSI 81
Query: 66 SSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQ 125
+SPLAG+L ++YDRP VL IG + WA STAAVG SQHF V WRAVNG GLAIVIPALQ
Sbjct: 82 ASPLAGILALHYDRPTVLAIGTVFWALSTAAVGVSQHFGQVAFWRAVNGLGLAIVIPALQ 141
Query: 126 SFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSV 185
SFIADSYKDG RGAGFGLLSL+G +GGIGG +LATIMAG +WG PGWR AF+++A +S+
Sbjct: 142 SFIADSYKDGTRGAGFGLLSLIGAVGGIGGSILATIMAGKDYWGFPGWRVAFMMVALVSL 201
Query: 186 LIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTF 245
+I LV ++ DPR+ ++++R L K S+W +SW+AT++V+KV TF
Sbjct: 202 IIGILVYLYATDPRRIPGNRLLDEDDYERLHLSSKDVLPPPSIWRDSWVATRSVMKVKTF 261
Query: 246 QIIVLQGIVGSLPWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRIS 305
QIIVLQGI+GSLPWTA+VFFTMWFELIGFD+ S+AAL SLFAIGCA G+FLGGV+AD +S
Sbjct: 262 QIIVLQGIIGSLPWTAIVFFTMWFELIGFDNKSSAALNSLFAIGCASGAFLGGVIADHLS 321
Query: 306 QAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANG 365
+ +P S RVMCAQFSAFMGIPFSW LLT IPQSV +Y +AVTL MG+TISW AT+AN
Sbjct: 322 KYFPDSARVMCAQFSAFMGIPFSWILLTVIPQSVDYWYAFAVTLFFMGITISWCATSANN 381
Query: 366 PMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGYDSKAIDPVMGSPREAL 425
PMFAEVVP KHRTMIYAFDRAFEGSF+S AAP VG+++EK++GYD+K ++ GS A
Sbjct: 382 PMFAEVVPPKHRTMIYAFDRAFEGSFASLAAPAVGLVTEKIYGYDTKTVNLANGSAEGAY 441
Query: 426 ALSRGLLSMMAVPFGLCCLFYTPLYKIFKRDRENARLASFKE 467
ALSRGLL+MM VPFG+C LFY+PLY +FK DRENA+L SFKE
Sbjct: 442 ALSRGLLTMMTVPFGVCVLFYSPLYLVFKHDRENAKLTSFKE 483
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 476 | |||
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 1e-20 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-14 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 3e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-06 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 2e-06 | |
| TIGR00900 | 365 | TIGR00900, 2A0121, H+ Antiporter protein | 4e-06 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 9e-06 | |
| TIGR00881 | 379 | TIGR00881, 2A0104, phosphoglycerate transporter fa | 2e-05 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 3e-04 | |
| TIGR00711 | 485 | TIGR00711, efflux_EmrB, drug resistance transporte | 0.001 | |
| COG2271 | 448 | COG2271, UhpC, Sugar phosphate permease [Carbohydr | 0.001 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 0.004 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 92.5 bits (230), Expect = 1e-20
Identities = 74/365 (20%), Positives = 141/365 (38%), Gaps = 32/365 (8%)
Query: 32 NLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWA 91
L P++ ++E P+++G L + L+ PLAG L + R VL IG+L +A
Sbjct: 14 LLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFA 73
Query: 92 FSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMG 151
+ + + + R + G G + PA + IAD + RG GLLS +G
Sbjct: 74 LGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLG 133
Query: 152 GIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGEN 211
G +L ++A GWR AF+++A L++L A L + + P ++
Sbjct: 134 AALGPLLGGLLASL-----FGWRAAFLILAILALLAAVLAALLLPRPPPESKRPKPA--- 185
Query: 212 FDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAMVFFTMWFEL 271
E+ + W K +++ P +++ + G + + + ++ E+
Sbjct: 186 -------EEAPAPLVPAW-------KLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEV 231
Query: 272 IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFL 331
+G LL L + A+G L G ++DR+ ++ + +
Sbjct: 232 LGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLG---RRRRLLLALLLLILAALGLALLS 288
Query: 332 LTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSF 391
LT + V L+L+G A N + +++ P + R
Sbjct: 289 LT------ESSLWLLVALLLLGFGAGLVFPALNA-LVSDLAPKEERGTASGLYNTAGSLG 341
Query: 392 SSFAA 396
+
Sbjct: 342 GALGP 346
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 78/390 (20%), Positives = 137/390 (35%), Gaps = 66/390 (16%)
Query: 17 LILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVIN 76
L+L+ L + D LL ++E S G + + L S LAG L
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 77 YDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGV 136
+ R VL +G+L +A + + + + + R + G G + PA + IA+ +
Sbjct: 61 FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120
Query: 137 RGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVV 196
RG GL S +G + G +L ++A GWR F+++A L +L+A L+L
Sbjct: 121 RGRALGLFSAGFGLGALLGPLLGGLLAESL-----GWRWLFLILAILGLLLALLLLFL-- 173
Query: 197 DPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGS 256
+ ++ L + S
Sbjct: 174 ---------------------------------------------LRLLLLLALAFFLLS 188
Query: 257 LPWTAMVFF--TMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRV 314
+ ++ + E++G + LLSLF +G +G+ LGG+++DR+ GR
Sbjct: 189 FGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-------GRR 241
Query: 315 MCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPA 374
+ LL P + +G T A +E+ P
Sbjct: 242 RLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLA-----SELAPP 296
Query: 375 KHRTMIYAFDRAFEGSFSSFAAPLVGILSE 404
+ R F + L G+L +
Sbjct: 297 EARGTASGLFNTFGSLGGALGPLLAGLLLD 326
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-07
Identities = 46/137 (33%), Positives = 71/137 (51%), Gaps = 6/137 (4%)
Query: 62 VQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVI 121
Q + SPL+G+L + R VL +G+ + STA S + + + R + GFG A +
Sbjct: 10 GQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFAL 69
Query: 122 PALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMA 181
A + IAD Y RG GL+S +G + G L ++A QF GWR F+ +A
Sbjct: 70 VAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLA--QFL---GWRAPFLFLA 124
Query: 182 TLSVLIAFLVLVFVVDP 198
L+ L AF++L F++
Sbjct: 125 ILA-LAAFILLAFLLPE 140
|
Length = 141 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 6/154 (3%)
Query: 43 EAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINY-DRPAVLTIGILCWAFSTAAVGASQ 101
E ++ G L + L + L G+L R +L IG+L A + +
Sbjct: 204 EVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP 263
Query: 102 HFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATI 161
+ + + GFGL PAL + ++ RG GL + G++GG G +LA +
Sbjct: 264 SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGL 323
Query: 162 MAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFV 195
+ G+ F+++A L++L A L+L+
Sbjct: 324 LLDTG-----GYGGVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 59/301 (19%), Positives = 106/301 (35%), Gaps = 16/301 (5%)
Query: 15 LSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLV 74
++IL L +M+ D + +S + P LG+L + G L
Sbjct: 17 RAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLA 76
Query: 75 INYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKD 134
R VL IL ++ T + + + + R + G GL ++P L + +++
Sbjct: 77 DRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPK 136
Query: 135 GVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVF 194
RG GL+ +G GG LA + GWR F + +L+ L++ F
Sbjct: 137 RFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF-----GWRSLFYVGGIAPLLLLLLLMRF 191
Query: 195 VVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLES------WMATKAVIKVPTFQII 248
+ + + + + + S E + + I
Sbjct: 192 LPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARI 251
Query: 249 VLQGIVGSLPWTAMVFFTM-WFELI----GFDHSSTAALLSLFAIGCAVGSFLGGVVADR 303
+ + V+F W + GF S A +LF G +GS + G +ADR
Sbjct: 252 TVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADR 311
Query: 304 I 304
+
Sbjct: 312 L 312
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 4e-06
Identities = 69/374 (18%), Positives = 124/374 (33%), Gaps = 50/374 (13%)
Query: 44 AFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHF 103
A S L + SP+AG L YDR V+ L A A +
Sbjct: 28 AGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL 87
Query: 104 LHVGMWR-AVNGFGLAIV----IPALQSFIADSYKD-------GVRGAGFGLLSLVGTMG 151
+ +W+ V LAI PA Q+ + D + + A L +VG
Sbjct: 88 GGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGP-- 145
Query: 152 GIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGEN 211
GIGG + AT+ W + I+ L++V V P AS
Sbjct: 146 GIGGLMYATLGIKWAIWVD-----------AVGFAISALLIVSVRIPELAASEIQALSNA 194
Query: 212 FDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAMVFFTMWFEL 271
RD + V + T ++ + F ++ IV P+ +
Sbjct: 195 VLRDTR-----EGIKFVLKNPLLRTLLLLAL-LFNLVFAPAIVALFPYVQSKYLGRGSTH 248
Query: 272 IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFL 331
G+ +L+ F +G +G+ L G++ + +G + +G+
Sbjct: 249 YGW-------VLAAFGLGALLGALLLGLLGRYFKRMALMTGAIF------VIGLA----- 290
Query: 332 LTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSF 391
+ + + N+ + V +G+ G + VPA+ ++ + +
Sbjct: 291 ILVVGLTPPNFPLFLVLWFAIGVGYGPINV-PQGTLLQRRVPAELLGRVFGAQFSLSHAA 349
Query: 392 SSFAAPLVGILSEK 405
L G L++
Sbjct: 350 WPLGLILAGPLADH 363
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 365 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 9e-06
Identities = 49/236 (20%), Positives = 83/236 (35%), Gaps = 31/236 (13%)
Query: 82 VLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGF 141
L + I+ W T + ++ + + R + G A P + +A + R
Sbjct: 61 TLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAV 120
Query: 142 GLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKK 201
+ + +GGI GG L + H W+ AFI+ L ++ L L F+ DP +K
Sbjct: 121 SIFNSAQGLGGIIGGPLVGWILIHF-----SWQWAFIIEGVLGIIWGVLWLKFIPDPPQK 175
Query: 202 A--------STFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGI 253
A G E KG ++ K ++K + L
Sbjct: 176 AKWLTEEEKYIVVGGL----LAEQQGKGPSTP------KKYQIKELLKDRRVWGLALGQF 225
Query: 254 VGSLPWTAMVFFTMWFELI-----GFDHSSTAALLSLFAIGCAVGSFLGGVVADRI 304
+ ++ FF WF G + SL I +G LGG ++D +
Sbjct: 226 LVNIGLG---FFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL 278
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 62/365 (16%), Positives = 124/365 (33%), Gaps = 33/365 (9%)
Query: 50 SDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMW 109
+DLG L + G+S + G + + L IG++ A G S +
Sbjct: 30 TDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAAL 89
Query: 110 RAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGG-GVLATIMAGHQFW 168
A+NG + P + + RG + +GG ++ +A + +
Sbjct: 90 WALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIA--ELY 147
Query: 169 GVPGWRCAFILMATLSVLIAFLVLVFVVDPRKK---ASTFHGTGENFDRDELVEKGNTSV 225
W FI+ ++++++ + + + D + E D D ++ +
Sbjct: 148 S---WHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTK 204
Query: 226 SSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAMVFFTMWFELIGFDHSSTAALLSL 285
++L+ + K + + + V G L W + GF + +L
Sbjct: 205 KQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDW----SPLYLTQEKGFSKEKASWAFTL 260
Query: 286 FAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTY 345
+ +G VG+ L G ++D++ +GR I S + P +N
Sbjct: 261 YELGGLVGTLLAGWLSDKL-----FNGRRGPLAVFFMALIIVSLLVYWLNPA--ANPLMD 313
Query: 346 AVTLVLMGLTISWNATAANGPMF------AEVVPAKHRTMIYAFDRAFEGSFSSFAAPLV 399
+ L +G + GP +E+ P K F F A +
Sbjct: 314 LICLFALGFLV-------YGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPL 366
Query: 400 GILSE 404
G L++
Sbjct: 367 GYLAD 371
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 62/355 (17%), Positives = 116/355 (32%), Gaps = 60/355 (16%)
Query: 13 ISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGV 72
+ L+L+ + LAA E + + ++ G L L +PL +
Sbjct: 11 MWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLAL 70
Query: 73 LVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSY 132
L +R +L + + S + F + + RA+ G + + A
Sbjct: 71 LTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLV 130
Query: 133 KDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVL 192
G RG L+ T+ + G L T + Q +G WR F+ +A L++ +A L+L
Sbjct: 131 PPGKRGRALALVFTGLTLATVLGVPLGTFLG--QLFG---WRATFLAIAVLAL-LALLLL 184
Query: 193 VFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQG 252
++ P + + + +++ G
Sbjct: 185 WKLLPPSEIS--------------------------------GSLPGPLRTLLRLLRRPG 212
Query: 253 IVGSLPWTAMVF--FTMWFELI--------GFDHSSTAALLSLFAIGCAVGSFLGGVVAD 302
++ L T + + I GF S+ + +L F I +G+ LGG +AD
Sbjct: 213 VLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLAD 272
Query: 303 RISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTIS 357
R R + + T +++ L L G S
Sbjct: 273 R-------GPRRALIAALLLLALALLALTFTGASPALA-----LALLFLWGFAFS 315
|
Length = 394 |
| >gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 7/140 (5%)
Query: 62 VQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVI 121
+S PL G L + + I + + G + + + ++R + GFG +I
Sbjct: 49 ANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLI 108
Query: 122 PALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMA 181
P S + + Y RG + L + G L + + W +I +
Sbjct: 109 PLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWR-------WIFLI 161
Query: 182 TLSVLIAFLVLVFVVDPRKK 201
+ + I +V+ F + PR K
Sbjct: 162 NVPIGIIVVVVAFFILPRDK 181
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485 |
| >gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 64/314 (20%), Positives = 114/314 (36%), Gaps = 24/314 (7%)
Query: 50 SDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMW 109
+ LG L + G+S + GVL + + G++ A G S +
Sbjct: 64 TQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVL 123
Query: 110 RAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWG 169
+NG+ + P I + RG S+ T IGG + + F
Sbjct: 124 WVLNGWFQGMGWPPCARTITHWFSRKERG---TWWSIWNTSHNIGGALAPLVALLAFFAF 180
Query: 170 VPGWRCAFILMATLSVLIAFLVLVFVVD-PRKKASTFHGTGENFDRDELVEKGNTSVSSV 228
GWR AF +++++A ++L + D P+ + E + D L +
Sbjct: 181 HGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEG---LPPIEEYRGDPLEIYEEEKENEG 237
Query: 229 WLESWMATKAVIKVPTFQII----VLQGIV--GSLPWTAMVFFTMWFELIGFDHSSTAAL 282
+ K V+K ++ V +V G W ++ + E+ GF
Sbjct: 238 LTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDW-GPLYLS---EVKGFSLVKANWA 293
Query: 283 LSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNY 342
+SLF + G+ L G ++D++ + GR + I S L P +Y
Sbjct: 294 ISLFEVAGLPGTLLAGWLSDKLFK-----GRRGPMALIFMLLITASLVLYWLAPN--GSY 346
Query: 343 YTYAVTLVLMGLTI 356
A+ L ++G I
Sbjct: 347 LLDAILLFIIGFLI 360
|
Length = 448 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.004
Identities = 54/241 (22%), Positives = 97/241 (40%), Gaps = 24/241 (9%)
Query: 69 LAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFI 128
L G+L + R ++ I+ ++ T G + + + + R + G G+A ++
Sbjct: 72 LFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYA 131
Query: 129 ADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIA 188
+S+ ++ L + GIG + A M F GWR AF +
Sbjct: 132 VESWPKHLKSKASAFLV---SGFGIGNIIAAYFMP--SFAEAYGWRAAF--------FVG 178
Query: 189 FLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQI- 247
L ++ V+ R +A + ++ +L KG S S W ++ K + F +
Sbjct: 179 LLPVLLVIYIRARAPE----SKEWEEAKLSGKGKHS-QSAWSVFSLSMKGLFNRAQFPLT 233
Query: 248 ----IVLQGIVGSLPWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADR 303
IVL I G+ W + GFD + L++ A G +G+ + G+ ADR
Sbjct: 234 LCVFIVLFSIFGA-NWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADR 292
Query: 304 I 304
I
Sbjct: 293 I 293
|
Length = 426 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 476 | |||
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 100.0 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 100.0 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 100.0 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 100.0 | |
| PRK10054 | 395 | putative transporter; Provisional | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 100.0 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 100.0 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 100.0 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 100.0 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 100.0 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 100.0 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 100.0 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 100.0 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 100.0 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 100.0 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.97 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.97 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.97 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.97 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.97 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.97 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.97 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.97 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.97 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.97 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.97 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.97 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.97 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.96 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.96 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.96 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.96 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.96 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.96 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.96 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.96 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.95 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.95 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.95 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.94 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.94 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.93 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.93 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.93 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.93 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.93 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.92 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.92 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.91 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.91 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.91 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.91 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.91 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.9 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.88 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.88 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.86 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.84 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.82 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.8 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.79 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.77 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.69 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.69 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.68 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.65 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.62 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.61 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.61 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.59 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.56 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.56 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.56 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.56 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.56 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.56 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.55 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.54 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.53 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.53 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.52 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.51 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.51 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.5 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.49 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.49 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.49 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.49 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.47 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.44 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.44 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.43 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.42 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.42 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.41 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.41 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.4 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.39 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.39 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.37 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.37 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.37 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.37 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.37 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.37 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.36 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.35 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.34 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.34 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.33 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.33 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.32 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.32 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.31 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.29 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.29 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.29 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.28 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.28 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.27 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.27 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.26 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.26 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.25 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.25 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.24 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.24 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.24 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.24 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.24 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.24 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.23 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.23 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.21 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.2 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.2 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.2 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.2 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.18 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 99.17 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.17 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.16 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.16 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.16 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.16 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.16 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.16 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.15 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.14 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.13 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.12 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.11 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.11 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.11 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.1 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.1 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.1 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 99.09 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 99.09 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.08 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 99.07 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 99.06 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.06 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.03 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.02 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.0 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.98 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.97 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.97 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.95 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.94 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.94 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.93 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.93 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.92 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.9 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.89 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.87 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.86 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.84 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.82 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.77 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.73 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.71 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.66 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.66 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.64 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.64 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.57 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.57 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.55 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.54 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.51 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.49 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.46 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.43 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.38 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.37 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.34 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.28 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.24 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.2 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.16 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 98.09 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 98.03 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.94 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.91 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.9 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.85 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.82 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.75 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.67 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.67 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 97.64 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.48 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.34 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 97.33 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.01 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.99 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 96.97 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.85 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 96.81 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.69 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.62 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.59 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.41 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.22 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.21 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 95.74 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 95.63 | |
| KOG4830 | 412 | consensus Predicted sugar transporter [Carbohydrat | 95.34 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 95.01 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 94.22 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 94.2 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 93.76 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 93.16 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 91.51 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 91.18 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 86.32 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 85.51 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 85.25 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 81.21 |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=322.99 Aligned_cols=409 Identities=18% Similarity=0.217 Sum_probs=330.2
Q ss_pred cchHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHH
Q 011831 11 LGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCW 90 (476)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~ 90 (476)
+.|+.++..+++++...++.+..++...|.+.||.++|.+|+|++.+.+.++|.++..+.|.++||.+.|+.+..++++.
T Consensus 25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLils 104 (448)
T COG2271 25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILS 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHH
Confidence 44677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHH--HHHhhcccC
Q 011831 91 AFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLA--TIMAGHQFW 168 (476)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~--~~l~~~~~~ 168 (476)
++.+++++++++++.+.++.+++|..+|..+|++...+++|+|++|||+..++++.+.|+|..+.|++. +++..+
T Consensus 105 ai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~--- 181 (448)
T COG2271 105 AIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH--- 181 (448)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc---
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 888877
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHH
Q 011831 169 GVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQII 248 (476)
Q Consensus 169 ~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (476)
.+||..|++.++++++.+++.++..+|+|+...-.+.||.+.+..+..+++++.+....++. -.+.++++|..|.+
T Consensus 182 --~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i--~~~YVL~Nk~iW~l 257 (448)
T COG2271 182 --GGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQI--FVKYVLKNKLIWLL 257 (448)
T ss_pred --cchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHH--HHHHHHcChHHHHH
Confidence 79999999999999999999999999887765554333333232222122222221222332 33468999999999
Q ss_pred HHHHHhhhhh-hhHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhh
Q 011831 249 VLQGIVGSLP-WTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIP 326 (476)
Q Consensus 249 ~~~~~~~~~~-~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 326 (476)
.+..++.+.. +++..|.|.|+.| .|+|..+++...+.+-.++++|.+++||++||+.+.+.. .......+...
T Consensus 258 a~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~-----p~~~i~~~~i~ 332 (448)
T COG2271 258 ALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRG-----PMALIFMLLIT 332 (448)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccc-----hHHHHHHHHHH
Confidence 8888887775 7777999999988 999999999999999999999999999999998532211 12222222222
Q ss_pred HHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhh-hhhhhhHHHHHHHhh
Q 011831 327 FSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGS-FSSFAAPLVGILSEK 405 (476)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-~~~~~~~~~g~l~~~ 405 (476)
.+...+...+.. +..+..++++.+|+....... +.-....|+.|++..|++.|+...++++ |.+.+....|++.|.
T Consensus 333 ~~~~~~w~~~~~--~~~l~~~~l~~iGf~IyGPqm-LiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~ 409 (448)
T COG2271 333 ASLVLYWLAPNG--SYLLDAILLFIIGFLIYGPQM-LIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT 409 (448)
T ss_pred HHHHHHHcCCCc--cHHHHHHHHHHHHHHHhhHHH-HHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec
Confidence 332333332222 356667888888988877776 6677888999999999999999999999 666999999999998
Q ss_pred hhcCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhch
Q 011831 406 MFGYDSKAIDPVMGSPREALALSRGLLSMMAVPFGLCCLFYTPLYKIFK 454 (476)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (476)
.+| .+.+....+..+++.++.+...+.++
T Consensus 410 -~gW-------------------~g~Fi~~~~~a~l~~lll~~~~~~~~ 438 (448)
T COG2271 410 -WGW-------------------DGGFIVLSIAALLAILLLLPVWNAEE 438 (448)
T ss_pred -CCC-------------------cchHHHHHHHHHHHHHHHHHHHhhcc
Confidence 666 44455555555566666555554433
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=305.90 Aligned_cols=356 Identities=19% Similarity=0.239 Sum_probs=288.3
Q ss_pred cccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHH
Q 011831 9 KVLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGIL 88 (476)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~ 88 (476)
+++..+..+..+.++.|..+....+...++|++.+|+|+|..+.|+..|.|.+++.+++|+...+.||+.||++++..+.
T Consensus 7 ~~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~ 86 (394)
T COG2814 7 ARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLA 86 (394)
T ss_pred ccccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH
Confidence 34556777888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccC
Q 011831 89 CWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFW 168 (476)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~ 168 (476)
++.++++++++++||+.++++|++.|+..|.+++...++.++..||++|++++++...+..++.++|.+++.++.+.
T Consensus 87 lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~--- 163 (394)
T COG2814 87 LFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL--- 163 (394)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHH---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHH
Q 011831 169 GVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQII 248 (476)
Q Consensus 169 ~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (476)
+|||..|++.+.++++..+..+...| |+....+. +...++..+++|+|..+..
T Consensus 164 --~GWR~~F~~ia~l~ll~~~~~~~~lP-~~~~~~~~------------------------~~~~~~~~~~l~~p~v~~~ 216 (394)
T COG2814 164 --FGWRATFLAIAVLALLALLLLWKLLP-PSEISGSL------------------------PGPLRTLLRLLRRPGVLLG 216 (394)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHhCC-CccCCCCC------------------------CcchhHHHHHhcCchHHHH
Confidence 99999999999999999888888777 22221111 1112333456777777776
Q ss_pred HHHHHhh-hhhhhHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhh
Q 011831 249 VLQGIVG-SLPWTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIP 326 (476)
Q Consensus 249 ~~~~~~~-~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 326 (476)
.+..++. ...+..++|+..++++ .|+|....++.+..+++++++|+.++|++.|| +.|+. ......+....
T Consensus 217 l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~------l~~~~~l~a~~ 289 (394)
T COG2814 217 LLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRA------LIAALLLLALA 289 (394)
T ss_pred HHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhH------HHHHHHHHHHH
Confidence 6655554 4467777999888887 99999999999999999999999999999999 66552 11111111111
Q ss_pred HHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 327 FSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
+..+....++.....+..++.|+....... .......+.. ++.++.+.+++....|+|.++|..++|.+.|+
T Consensus 290 -----~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~-~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~- 361 (394)
T COG2814 290 -----LLALTFTGASPALALALLFLWGFAFSPALQ-GLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDA- 361 (394)
T ss_pred -----HHHHHHhcchHHHHHHHHHHHHHHhhhhhh-HHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 111111222223344445556666554444 4445555533 48899999999999999999999999999999
Q ss_pred hcC
Q 011831 407 FGY 409 (476)
Q Consensus 407 ~~~ 409 (476)
.++
T Consensus 362 ~g~ 364 (394)
T COG2814 362 LGY 364 (394)
T ss_pred hch
Confidence 554
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=331.09 Aligned_cols=376 Identities=18% Similarity=0.185 Sum_probs=276.5
Q ss_pred hHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHH
Q 011831 13 ISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAF 92 (476)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~ 92 (476)
.+.++..+++.++..+.++..+++..|.+.+|+|++.++.|++.+.+.+++.+++++.|+++||+|||+++..+.+++++
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~ 106 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAI 106 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHH
Confidence 45667788888999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHh-----hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhccc
Q 011831 93 STAAVGA-----SQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQF 167 (476)
Q Consensus 93 ~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~ 167 (476)
+.++.++ +++++.+++.|+++|++.+...|...++++||+|+++|++++|+++.+.++|.++++++..++.+..
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~- 185 (467)
T PRK09556 107 CMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYF- 185 (467)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhh-
Confidence 8877665 5899999999999999999999999999999999999999999999999999999999987776530
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChh-hHhhhcCCccchhHHHHHHhhhhhccchhHH
Q 011831 168 WGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRD-ELVEKGNTSVSSVWLESWMATKAVIKVPTFQ 246 (476)
Q Consensus 168 ~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (476)
...+||..|.+.+++.++.+++.+++.++++++....++++ ..+.. ...++..+.++...++. -.+..+++|.+|
T Consensus 186 -~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~ 261 (467)
T PRK09556 186 -FDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEE-IFGEPISEEDKETESTDMTKWQI--FVEYVLKNPVIW 261 (467)
T ss_pred -ccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhh-cccCccchhhhccccccCcHHHH--HHHHHHcChHHH
Confidence 01269999999898888877777766655443322111111 00000 00000000001011111 122367888888
Q ss_pred HHHHHHHhhhhh-hhHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhh
Q 011831 247 IIVLQGIVGSLP-WTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMG 324 (476)
Q Consensus 247 ~~~~~~~~~~~~-~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~ 324 (476)
...+..++.... ++...|+|.|+++ +|+|+.+++...+...++.+++.++.|+++||+++|+.. .... ....
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~-----~~~~-~~~~ 335 (467)
T PRK09556 262 LLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRAL-----VACI-ALAL 335 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchH-----HHHH-HHHH
Confidence 877766665554 4444789999976 999999999999999999999999999999999988632 1111 1111
Q ss_pred hhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhh-hhhhhhHHHHHHH
Q 011831 325 IPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGS-FSSFAAPLVGILS 403 (476)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-~~~~~~~~~g~l~ 403 (476)
. ...... ....++ .....+..+..|+....... .......|.+|++.+|++.|+.+..+++ ++.++|.+.|++.
T Consensus 336 ~-~~~~~~--~~~~~~-~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~ 410 (467)
T PRK09556 336 I-IFTLGV--YQHATS-EYMYLASLFALGFLVFGPQL-LIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIA 410 (467)
T ss_pred H-HHHHHH--HHhcCc-HHHHHHHHHHHHHHHhhHHH-HHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHh
Confidence 1 111111 111222 22233445555644322222 2235667999999999999999999997 6689999999999
Q ss_pred h
Q 011831 404 E 404 (476)
Q Consensus 404 ~ 404 (476)
|
T Consensus 411 ~ 411 (467)
T PRK09556 411 D 411 (467)
T ss_pred c
Confidence 9
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=318.61 Aligned_cols=386 Identities=11% Similarity=0.101 Sum_probs=281.7
Q ss_pred cchHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHH
Q 011831 11 LGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCW 90 (476)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~ 90 (476)
+.+|+.+..+++.++++++++...+...|.+.+|+|++.++.|++.+++.+++.+++++.|+++||+|||+++..+.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW 83 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence 45788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhccc-CC
Q 011831 91 AFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQF-WG 169 (476)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~-~~ 169 (476)
+++++++++++|++.+++.|+++|++.+...|....++.|++|+++|++++++++.+.++|.++++.+++++.+... .+
T Consensus 84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 163 (412)
T TIGR02332 84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMA 163 (412)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998874210 12
Q ss_pred CCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhc---CCcc---chhHHHHHHhhhhhccch
Q 011831 170 VPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKG---NTSV---SSVWLESWMATKAVIKVP 243 (476)
Q Consensus 170 ~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~ 243 (476)
..|||+.|++.++++++..++.+++.||++++.+..++++++...+..+.+. +..+ ........+.++.++ ++
T Consensus 164 ~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 242 (412)
T TIGR02332 164 LKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF-TP 242 (412)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhc-Ch
Confidence 2699999999999888777777777777654322111111110000000000 0000 000001112233344 45
Q ss_pred hHHHHHHHHHhhhh-hhhHHHHHHHHHHHh--CCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHH
Q 011831 244 TFQIIVLQGIVGSL-PWTAMVFFTMWFELI--GFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFS 320 (476)
Q Consensus 244 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 320 (476)
.++...+..++... .+...+|+|.+++++ |+++.+++.......++.+++.++.|+++||+++|+.. ....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~------~~~~ 316 (412)
T TIGR02332 243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHH------TALP 316 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHH------HHHH
Confidence 66666555555444 344558999999874 67888999999999999999999999999999877521 1111
Q ss_pred HHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHH
Q 011831 321 AFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVG 400 (476)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g 400 (476)
....... ..... ..... .. ........+++.....+ .......|.+|+++|++++|+.+...+++++++|.+.|
T Consensus 317 ~~~~~~~--~~~~~-~~~~~-~~-~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g 390 (412)
T TIGR02332 317 YLFAAAG--WLLAS-ATDHN-LI-QLLGIIMASMGSFSAMA-IFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIG 390 (412)
T ss_pred HHHHHHH--HHHHH-hcCCH-HH-HHHHHHHHHHHhhhhhh-HHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 1111111 11111 11111 11 11112222222222222 33455577889999999999999999999999999999
Q ss_pred HHHhhhhcC
Q 011831 401 ILSEKMFGY 409 (476)
Q Consensus 401 ~l~~~~~~~ 409 (476)
.+.|..++|
T Consensus 391 ~i~~~~g~~ 399 (412)
T TIGR02332 391 ILKDATGSF 399 (412)
T ss_pred cccccCCCC
Confidence 999987766
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=308.85 Aligned_cols=351 Identities=17% Similarity=0.191 Sum_probs=270.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHH
Q 011831 10 VLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILC 89 (476)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~ 89 (476)
++++|..+..+.+..+..........+.+|.+.+|+|.|+++.|++.+.+.+++.+++++.|+++||+|||+++..+.++
T Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 83 (390)
T PRK03545 4 RKVAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVL 83 (390)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 34456556666666565555555566778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCC
Q 011831 90 WAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWG 169 (476)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~ 169 (476)
..++++++++++|++++++.|+++|++.+...+...+++.|++|+|+|++++++...+.++|..++|++++.+.+.
T Consensus 84 ~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~---- 159 (390)
T PRK03545 84 FIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY---- 159 (390)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHH
Q 011831 170 VPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIV 249 (476)
Q Consensus 170 ~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (476)
.|||+.|++.++++++..+..+...|++++++ + +..++.++.+|+|.++...
T Consensus 160 -~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~--~-------------------------~~~~~~~~~~~~~~~~~~~ 211 (390)
T PRK03545 160 -LGWRTTFLAIGGGALITLLLLIKLLPLLPSEH--S-------------------------GSLKSLPLLFRRPALVSLY 211 (390)
T ss_pred -hcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--c-------------------------chHHHHHHHHhCcHHHHHH
Confidence 89999999999888777666555444432110 0 0012234566777766544
Q ss_pred HHHHh-hhhhhhHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhH
Q 011831 250 LQGIV-GSLPWTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPF 327 (476)
Q Consensus 250 ~~~~~-~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~ 327 (476)
...++ ....+...++.+.++++ .|+|+.+++.......+++++++++.+++.||+++|+. ...........
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-------~~~~~~~~~~~ 284 (390)
T PRK03545 212 LLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL-------LIAIALLLVCL 284 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH-------HHHHHHHHHHH
Confidence 43333 33334445777888776 79999999999999999999999999999999987641 11111111111
Q ss_pred HHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 328 SWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
.... ...++ ........++.|++.....+ .....+.|..| +.+++++|+.+...++|..+||.+.|.+.|+.
T Consensus 285 --~~l~--~~~~~-~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~ 356 (390)
T PRK03545 285 --LLLL--PAANS-EWHLSVLSIFWGIAIMCIGL-AMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHL 356 (390)
T ss_pred --HHHH--HHhch-HHHHHHHHHHHHHHHhcchH-HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1111 11122 23344566667777655544 45667778766 68899999999999999999999999999985
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-41 Score=301.56 Aligned_cols=386 Identities=35% Similarity=0.572 Sum_probs=307.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHH
Q 011831 9 KVLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGIL 88 (476)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~ 88 (476)
+.+..++.+.++++..+++..|++.+....+.+++.+|++++..|++.+.+.+.+.+++|+.|+++||++||+++.+|..
T Consensus 27 ~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~ 106 (493)
T KOG1330|consen 27 SMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIF 106 (493)
T ss_pred ccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHH
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccC
Q 011831 89 CWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFW 168 (476)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~ 168 (476)
+|.++.++++++..+|+++++|.+.|+|.+...|.++++++|.+|.++|++.+++++...++|..+|.+++..+.+..
T Consensus 107 iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~-- 184 (493)
T KOG1330|consen 107 IWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT-- 184 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999872
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHH--
Q 011831 169 GVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQ-- 246 (476)
Q Consensus 169 ~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 246 (476)
..|||.|+..++++++++++.+++.+||++....+.+.+.+. ..+....+ ++.+.+.+++.+.
T Consensus 185 --~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~---------~~~~ts~~----kDl~~l~~~~v~v~~ 249 (493)
T KOG1330|consen 185 --FWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKM---------VKPFTSVW----KDLKVLAKIKVFVLS 249 (493)
T ss_pred --cceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcC---------CCCccchH----HHHHHHHccCceeee
Confidence 349999999999999999999999999887533221111100 11122233 3444444444433
Q ss_pred ---HHHHHHHhhhhhhhHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHh
Q 011831 247 ---IIVLQGIVGSLPWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFM 323 (476)
Q Consensus 247 ---~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~ 323 (476)
.....+......+....+.+...+-.|++..+...+..+...++.+|.+++|.++||+.++.+...+.........+
T Consensus 250 sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~ 329 (493)
T KOG1330|consen 250 SLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAAL 329 (493)
T ss_pred hHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhh
Confidence 33333333333333333333333336777777777888889999999999999999987766555555666666666
Q ss_pred hhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhh-hHHHHHH
Q 011831 324 GIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFA-APLVGIL 402 (476)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~-~~~~g~l 402 (476)
+.......+...+.....-......++++|....+........+..|++|+++|.++.++...+..+.+-.+ |++.|.+
T Consensus 330 g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGil 409 (493)
T KOG1330|consen 330 GAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGIL 409 (493)
T ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhH
Confidence 665555555554444444455667777888887777776677888999999999999999999888877755 5599999
Q ss_pred HhhhhcCCC
Q 011831 403 SEKMFGYDS 411 (476)
Q Consensus 403 ~~~~~~~~~ 411 (476)
.|+..+|.+
T Consensus 410 sd~l~g~~~ 418 (493)
T KOG1330|consen 410 SDKLRGYKP 418 (493)
T ss_pred HHHhhCCCc
Confidence 999988864
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=309.99 Aligned_cols=379 Identities=15% Similarity=0.156 Sum_probs=274.5
Q ss_pred chHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHH
Q 011831 12 GISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWA 91 (476)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~ 91 (476)
.++.......+.++...++...++..+|.+.+++|+|.++.|++.+.+.+++.+++++.|+++||+|||+++.++.++.+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~ 99 (434)
T PRK11663 20 WRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG 99 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence 35566677788888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCC
Q 011831 92 FSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVP 171 (476)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~ 171 (476)
++.++++++++++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+.++|..+++.+.+.+.+. .
T Consensus 100 ~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~ 174 (434)
T PRK11663 100 IINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH-----Y 174 (434)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----c
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887 8
Q ss_pred chhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHH
Q 011831 172 GWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQ 251 (476)
Q Consensus 172 ~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (476)
+||+.|++.+++.++..++..+..+|++........++.+.+.++..++. ...+.+.++..+ +..++++.++...+.
T Consensus 175 gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 251 (434)
T PRK11663 175 GWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQ-EGAGLSRKEILT--KYVLLNPYIWLLSFS 251 (434)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhc-cccCCChhhhHH--HHHhcChHHHHHHHH
Confidence 99999999988877665555544454433211110000000000000000 000111122111 125667777776665
Q ss_pred HHhhhhhhh-HHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHH
Q 011831 252 GIVGSLPWT-AMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSW 329 (476)
Q Consensus 252 ~~~~~~~~~-~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (476)
.+.....+. ..+|+|.|+++ +|+++.+++...+...+++++++++.|++.||+.+++... .......+.... .
T Consensus 252 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~-~~~~~~~~~~~~----~ 326 (434)
T PRK11663 252 YVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGP-MNLIFAAGILLS----V 326 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccH-HHHHHHHHHHHH----H
Confidence 555444443 44789999965 8999999999999999999999999999999994332100 001111111111 1
Q ss_pred hhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 330 FLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
......+.. +... .....+..|++...... .......|..|++.|++++|+.+...++|++++|.+.|++.|+.
T Consensus 327 ~~~~~~~~~-~~~~-~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~ 400 (434)
T PRK11663 327 GSLWLMPFA-SYVM-QAACFFTIGFFVFGPQM-LIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIW 400 (434)
T ss_pred HHHHHcccc-cHHH-HHHHHHHHHHHHhhHHH-HHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhc
Confidence 111112222 2122 22233334443222222 23456689899999999999999999999999999999999985
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=309.22 Aligned_cols=367 Identities=17% Similarity=0.157 Sum_probs=279.8
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHH
Q 011831 6 RTRKVLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTI 85 (476)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~ 85 (476)
+..+.+++|.++...++..++++++....+...|.+.+|+|.++++.|++.+.+.++..+++++.|+++||+|||+++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 85 (406)
T PRK11551 6 SSASSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIV 85 (406)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence 34456678888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhc
Q 011831 86 GILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGH 165 (476)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~ 165 (476)
+.++..++.++++++++++.+++.|++.|++.+...+...+++.|++|+|+|++++++.+.+..+|..+++.++..+.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 165 (406)
T PRK11551 86 SVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGD 165 (406)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888776
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhH
Q 011831 166 QFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTF 245 (476)
Q Consensus 166 ~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (476)
.+||+.|++.+++.++..++.....||+++...+++++++ .+...+...+. .+.+..
T Consensus 166 -----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------------~~~~~~~~~~~----~~~~~~ 222 (406)
T PRK11551 166 -----AAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQ--------------RAPVLRALFGE----GRATAT 222 (406)
T ss_pred -----cCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchh--------------hhhhHHHHhhh----hhhhHH
Confidence 8999999998877666665555555554322111100000 00000111110 011112
Q ss_pred HHHHHHHHhh-hhhhhHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhh
Q 011831 246 QIIVLQGIVG-SLPWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMG 324 (476)
Q Consensus 246 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~ 324 (476)
+......+.. ...+....|.|.++++.|+++.+.+...+...++.++++++.|++.||+++|+.. .......
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~-------~~~~~~~ 295 (406)
T PRK11551 223 LLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVV-------LLIYAGI 295 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHH
Confidence 2222222222 2234444789999999999999999999999999999999999999999988632 1111111
Q ss_pred hhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHh
Q 011831 325 IPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSE 404 (476)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 404 (476)
. ....... ..++. ....+..++.|++.+...+ ...++..|.+|+++|+++.|+.+...+++..++|.+.|.+.+
T Consensus 296 ~-~~~~~~~---~~~~~-~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~ 369 (406)
T PRK11551 296 L-ASLAALA---AAPSF-AGMLLAGFAAGLFVVGGQS-VLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA 369 (406)
T ss_pred H-HHHHHHH---hcCcH-HHHHHHHHHHHHHHHhHHH-HHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhc
Confidence 1 1111111 11222 2233455566666655555 567889999999999999999999999999999999999998
Q ss_pred hhhc
Q 011831 405 KMFG 408 (476)
Q Consensus 405 ~~~~ 408 (476)
+.++
T Consensus 370 ~~~~ 373 (406)
T PRK11551 370 LGRS 373 (406)
T ss_pred cCCc
Confidence 7544
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-38 Score=307.69 Aligned_cols=372 Identities=13% Similarity=0.145 Sum_probs=254.8
Q ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCc-hhHH-----HHHHHHHHHhhhhhhhHhhhhcCCchhHHHHH
Q 011831 14 SLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSD-LGYL-----TFIRNFVQGLSSPLAGVLVINYDRPAVLTIGI 87 (476)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~g~~-----~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~ 87 (476)
++.+....++.+++.+|...++...|.+.++++.+.++ .+++ .++..+++.+++++.|+++||+|||+++.+++
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 94 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI 94 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 55677788899999999999999999999999754433 2332 47778999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHH--------HHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHH
Q 011831 88 LCWAFSTAAVGASQHFLH--------VGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLA 159 (476)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~ 159 (476)
++++++++++++++|+++ ++++|+++|++.|+..+...++++|++|+|+|+++.++...+..+|..+++.+.
T Consensus 95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~ 174 (490)
T PRK10642 95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV 174 (490)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999875 889999999999999999999999999999999999999999999998888777
Q ss_pred HHHhhccc---CCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhh
Q 011831 160 TIMAGHQF---WGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMAT 236 (476)
Q Consensus 160 ~~l~~~~~---~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (476)
..+..... ...+|||+.|++.+++.++..++....+|+|++...+++.++++. + ...+.++.++++
T Consensus 175 ~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~--~----~~~~~~~~~~~~----- 243 (490)
T PRK10642 175 VLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR--E----GLQDGPKVSFKE----- 243 (490)
T ss_pred HHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc--c----cccccccCCHHH-----
Confidence 65543100 113799999999877665444333333333332211110000000 0 000001111121
Q ss_pred hhhccc--hhHHHHHHH-HHhhhhhhhHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCc
Q 011831 237 KAVIKV--PTFQIIVLQ-GIVGSLPWTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSG 312 (476)
Q Consensus 237 ~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~ 312 (476)
++++ +.+...... .+.....+....|+|.|+++ +|++..+.+.......++.+++.++.|+++||+|||+..
T Consensus 244 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~-- 319 (490)
T PRK10642 244 --IATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFV-- 319 (490)
T ss_pred --HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH--
Confidence 2221 122222222 22223345556889999976 899988888887888889999999999999999998731
Q ss_pred chhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhh
Q 011831 313 RVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFS 392 (476)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~ 392 (476)
..+...........+... ..++ ...+.+..++.|++.+.... ....+..|.+|++.|+++.|+.+.....++
T Consensus 320 -----~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~g~~~~~~~g-~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g 391 (490)
T PRK10642 320 -----ILGSVALFVLAIPAFILI-NSNV-IGLIFAGLLMLAVILNCFTG-VMASTLPAMFPTHIRYSALAAAFNISVLVA 391 (490)
T ss_pred -----HHHHHHHHHHHHHHHHHH-hCCC-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCccchHHHHHHHHHHHHHH
Confidence 111111111111111111 1122 22233444445554444433 456777899999999999998777788888
Q ss_pred hhhhHHHHHHHhhhhc
Q 011831 393 SFAAPLVGILSEKMFG 408 (476)
Q Consensus 393 ~~~~~~~g~l~~~~~~ 408 (476)
.++|.+.+++.+..++
T Consensus 392 ~~~p~i~g~l~~~~~~ 407 (490)
T PRK10642 392 GLTPTLAAWLVESTQN 407 (490)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999999887543
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-38 Score=306.77 Aligned_cols=374 Identities=14% Similarity=0.157 Sum_probs=288.8
Q ss_pred chHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHH
Q 011831 12 GISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWA 91 (476)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~ 91 (476)
++|..+..++++.++...|.++++..+|.+.+|+|.+.++.+|+.+.|.+++.++.+++|+++||+|||++++.+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~ 82 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFG 82 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhc-CCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCC
Q 011831 92 FSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSY-KDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGV 170 (476)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~ 170 (476)
++++++++++|++.++++|+++|++.+...+.....+.+++ |+++|+++++++....++|..+||.+++.+.++
T Consensus 83 ~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~----- 157 (495)
T PRK14995 83 LASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH----- 157 (495)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----
Confidence 99999999999999999999999999999998888887776 678999999999999999999999999999987
Q ss_pred CchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhH-------------hhhcCCccchh---------
Q 011831 171 PGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDEL-------------VEKGNTSVSSV--------- 228 (476)
Q Consensus 171 ~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~--------- 228 (476)
.+|||.|++...++++..++.++..|+++.+.. ++.+.... ..+........
T Consensus 158 ~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~------~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 231 (495)
T PRK14995 158 FYWGSVFLINVPIVLVVMGLTARYVPRQAGRRD------QPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLT 231 (495)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC------CCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 899999999988877777666666655432211 11111100 00000000000
Q ss_pred ---------HHHHHHh----hhhhccchhHHHHHHHHHhhhhh-hhHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhh
Q 011831 229 ---------WLESWMA----TKAVIKVPTFQIIVLQGIVGSLP-WTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVG 293 (476)
Q Consensus 229 ---------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~ 293 (476)
.++.+.. ..+++|+|.+....+..+..... ++...+.|.|+++ +|+|+.++|....+..++..++
T Consensus 232 ~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~ 311 (495)
T PRK14995 232 GALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFS 311 (495)
T ss_pred HHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 0010000 02467777777666655555443 3444678999987 8999999999999999999999
Q ss_pred hchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccC
Q 011831 294 SFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVP 373 (476)
Q Consensus 294 ~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p 373 (476)
.++.|++.||+++|+. ...+..+..... ..+......++. .......++.|++.+...+ .......+..|
T Consensus 312 ~~~~g~l~~r~g~~~~-------~~~g~~~~~~~~-~~l~~~~~~~~~-~~~~~~~~l~G~g~g~~~~-~~~~~~~~~~~ 381 (495)
T PRK14995 312 GPIAGILVSRLGLRLV-------ATGGMALSALSF-YGLAMTDFSTQQ-WQAWGLMALLGFSAASALL-ASTSAIMAAAP 381 (495)
T ss_pred HHHHHHHHHHcCchHH-------HHHHHHHHHHHH-HHHHHhcCCCch-HHHHHHHHHHHHhHHHHHH-HHHHHHHhcCC
Confidence 9999999999998752 122222221111 111111222222 2234566777888887776 56777788899
Q ss_pred ccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 374 AKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 374 ~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
+++++.+.++.+...++|+.+|+.+.|.+.+..
T Consensus 382 ~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~~ 414 (495)
T PRK14995 382 PEKAAAAGAIETMAYELGAGLGIAIFGLLLSRS 414 (495)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998763
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=305.52 Aligned_cols=383 Identities=15% Similarity=0.111 Sum_probs=278.4
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHH
Q 011831 8 RKVLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGI 87 (476)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~ 87 (476)
++..++|.++..+++...........++..+|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.
T Consensus 12 ~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~ 91 (455)
T TIGR00892 12 PDGGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGG 91 (455)
T ss_pred CCCCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhH
Confidence 34456788887777777766666677888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHH-HHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcc
Q 011831 88 LCWAFSTAAVGASQHFLHVGM-WRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQ 166 (476)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~ 166 (476)
++..+++++++++++++.+++ .|++.|++.+...+...+++.++++ ++|+++.++.+.+..+|..++|++++.+.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~- 169 (455)
T TIGR00892 92 LLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFES- 169 (455)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH-
Confidence 999999999999999998875 5799999998877777889999995 7899999999999999999999999999887
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHh-hhhhccchhH
Q 011831 167 FWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMA-TKAVIKVPTF 245 (476)
Q Consensus 167 ~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 245 (476)
.|||+.|++.+++.++..+..++..++++.......++++....+... ++.......++..+. ..+.+++|.+
T Consensus 170 ----~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (455)
T TIGR00892 170 ----FGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGST--KKLSKKSTAEKINRFLDFSLFTHRGF 243 (455)
T ss_pred ----hChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCcc--ccccccchhhhhhhhcchHHhcCchH
Confidence 899999999998877665555444433221110000000000000000 000000000111110 0136677888
Q ss_pred HHHHHHHHhhhhh-hhHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhc--cccCCCcchhHhHHHHH
Q 011831 246 QIIVLQGIVGSLP-WTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRIS--QAYPHSGRVMCAQFSAF 322 (476)
Q Consensus 246 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~--~~~~~~~~~~~~~~~~~ 322 (476)
+......+..... +....++|.|+++.|+++.+++...+..+++.++++++.|++.||.. +|+. .....+..
T Consensus 244 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-----~~~~~~~~ 318 (455)
T TIGR00892 244 LVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQ-----YLFSFALL 318 (455)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHH-----HHHHHHHH
Confidence 8766655544443 34447889999889999999999999999999999999999999743 2221 11111111
Q ss_pred hhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHH
Q 011831 323 MGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGIL 402 (476)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l 402 (476)
... +........++ ...+.+..++.|++.+...+ ...+++.|.+|++++++++|+.+...++++.++|.+.|.+
T Consensus 319 ~~~----l~~ll~~~~~~-~~~~~i~~~~~G~~~g~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l 392 (455)
T TIGR00892 319 FNG----LTHLLCALAGD-YTGLVIYCIFFGLSFGSVGA-LLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRL 392 (455)
T ss_pred HHH----HHHHHHHHhch-HHHHHHHHHHHHHHhchHHH-HHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeee
Confidence 111 11111111222 23344566777887776666 6778888999999999999999999999999999999999
Q ss_pred HhhhhcC
Q 011831 403 SEKMFGY 409 (476)
Q Consensus 403 ~~~~~~~ 409 (476)
.|..++|
T Consensus 393 ~~~~g~~ 399 (455)
T TIGR00892 393 VDATKNY 399 (455)
T ss_pred ehhcCCc
Confidence 9986655
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-38 Score=303.33 Aligned_cols=367 Identities=17% Similarity=0.216 Sum_probs=267.4
Q ss_pred cchHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHH
Q 011831 11 LGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCW 90 (476)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~ 90 (476)
+.+++.+....+.++.+.++.....+..|.+.+++|+++.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~ 93 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY 93 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 45666778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCC
Q 011831 91 AFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGV 170 (476)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~ 170 (476)
+++.++++++++++.++++|+++|++.+...+....++.|++|+|+|++++++...+.++|.++++.+.+.+.+.
T Consensus 94 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~----- 168 (426)
T PRK12307 94 SVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEA----- 168 (426)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHccc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred CchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHH
Q 011831 171 PGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVL 250 (476)
Q Consensus 171 ~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (476)
.+||+.|++..+..++.. ......||+++..+++ .+++ .+..+..+++.....++.++++.++....
T Consensus 169 ~~w~~~f~i~~~~~~~~~-~~~~~~p~~~~~~~~~-~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (426)
T PRK12307 169 YGWRAAFFVGLLPVLLVI-YIRARAPESKEWEEAK-LSGK-----------GKHSQSAWSVFSLSMKGLFNRAQFPLTLC 235 (426)
T ss_pred CCHHHHHHHHHHHHHHHH-HHHHHCCCChHHHHhh-hhcc-----------ccccccchhhhhHHHHHHHhhchHHHHHH
Confidence 899999998654433222 1111112211100000 0000 00000111122234455667776654433
Q ss_pred HHHhhhhh----hhHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhh
Q 011831 251 QGIVGSLP----WTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIP 326 (476)
Q Consensus 251 ~~~~~~~~----~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 326 (476)
........ +....++|.|+++.|+++.+.+...+...++.++++++.|++.||++||+.. ..+......
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-------~~~~~~~~~ 308 (426)
T PRK12307 236 VFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTF-------SIGLLMSFL 308 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH-------HHHHHHHHH
Confidence 22222221 2334678999988999999999999999999999999999999999988631 122222111
Q ss_pred HHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 327 FSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
.. ....... ... ........+..++....... ....++.|.+|++.||+++|+.+...++++.++|.+.|++.+..
T Consensus 309 ~~-~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~ 384 (426)
T PRK12307 309 FI-FPLFRIP-QDN-YLLLGACLFGLMATNVGVGG-LVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITM 384 (426)
T ss_pred HH-HHHHHHc-ccc-HHHHHHHHHHHHHhcccHhH-HHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcc
Confidence 11 1111111 111 12121222222222111122 34567789999999999999999999999999999999999885
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=299.40 Aligned_cols=382 Identities=15% Similarity=0.176 Sum_probs=274.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHH
Q 011831 9 KVLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGIL 88 (476)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~ 88 (476)
.++++|+.+..++++++.+.++....++..|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~ 85 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV 85 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 35678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccC
Q 011831 89 CWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFW 168 (476)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~ 168 (476)
+.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~--- 162 (405)
T TIGR00891 86 LFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPV--- 162 (405)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCc--hhHHHHHHHHHHHHHHHHhheeeccCCCCC-CCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccc--h
Q 011831 169 GVPG--WRCAFILMATLSVLIAFLVLVFVVDPRKKA-STFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKV--P 243 (476)
Q Consensus 169 ~~~~--wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 243 (476)
.+ ||+.|++.++..++..+.... .||++... .++++++.+...++.. +++...+...++.....+...++ +
T Consensus 163 --~~~~w~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (405)
T TIGR00891 163 --WGDGWRALFFISILPIIFALWLRKN-IPEAEDWKEKHAGKALVRTMVDILY-GGEHRIANIVMTLAAAMVQSAGKRWP 238 (405)
T ss_pred --cCccHHHHHHHHHHHHHHHHHHHHh-CCCChhHHHHhhhhhhhhhHHHHHh-ccchhhhhhhhhhhHHhhhhhhhhhH
Confidence 44 999999876665544433333 34332211 1110000000000000 00000000111111111111111 1
Q ss_pred hHHHHHHHH-HhhhhhhhHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHH
Q 011831 244 TFQIIVLQG-IVGSLPWTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSA 321 (476)
Q Consensus 244 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 321 (476)
.+....... +..........++|.|+++ .|+++.+.+.+.+...++.++++++.+++.||+++|+... .+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~-------~~~ 311 (405)
T TIGR00891 239 TFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYV-------CSL 311 (405)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhH-------HHH
Confidence 122222222 2222233344678888875 8999999999999999999999999999999999987421 111
Q ss_pred HhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHH
Q 011831 322 FMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGI 401 (476)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~ 401 (476)
....... ...... ..+ ........++.++..+...+ ....++.|..|+++|++++|+.+.+.++++.++|.+.|.
T Consensus 312 ~~~~~~~-~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~ 386 (405)
T TIGR00891 312 LAGQLLI-IPVFAI--GAN-VAVLGLGLFFQQMLVQGIWG-ILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGAL 386 (405)
T ss_pred HHHHHHH-HHHHHh--CCc-hHHHHHHHHHHHHHHccchh-hHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 1111111 111111 222 22233333445554444444 567788999999999999999999999999999999999
Q ss_pred HHhhhhcC
Q 011831 402 LSEKMFGY 409 (476)
Q Consensus 402 l~~~~~~~ 409 (476)
+.|..+.|
T Consensus 387 l~~~~g~~ 394 (405)
T TIGR00891 387 LAQRLDEY 394 (405)
T ss_pred HHHhcccc
Confidence 99997655
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=300.99 Aligned_cols=373 Identities=16% Similarity=0.190 Sum_probs=278.3
Q ss_pred HHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhH
Q 011831 24 AIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHF 103 (476)
Q Consensus 24 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~ 103 (476)
+++...++..++...|.+.+++|.++.+.+++.+.+.++..++.++.|+++||+|||+++..+.++.+++.+++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~ 82 (399)
T TIGR00893 3 TVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAY 82 (399)
T ss_pred ehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCH
Confidence 45667788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHH
Q 011831 104 LHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATL 183 (476)
Q Consensus 104 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~ 183 (476)
+.+++.|++.|++.+...+...+++.|++|+|+|++++++.+...++|.++++.+++.+.+. .+||+.|++.+++
T Consensus 83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~~~~~~~~~~~~~ 157 (399)
T TIGR00893 83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH-----FSWQWAFIIEGVL 157 (399)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh-----CCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887 8999999999988
Q ss_pred HHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhhhhhHH-
Q 011831 184 SVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAM- 262 (476)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 262 (476)
.++..++.++..++++++.+..++++++...++...+.+. +...++.....++.+++|.++...+..+.....+...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (399)
T TIGR00893 158 GIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQG--KGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFL 235 (399)
T ss_pred HHHHHHHhhheecCCCCccccCCHHHHhhcchhhcccccc--ccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHH
Confidence 8877777776666654433221111111111110000000 0000111233455677788777766666655554444
Q ss_pred HHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcch
Q 011831 263 VFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSN 341 (476)
Q Consensus 263 ~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (476)
.+.|.|+++ .|.++.+.+...+...++++++.++.|++.||+++|+... ...............+........+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~- 311 (399)
T TIGR00893 236 TWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSL---VFARKTAIIAGLVLSLLMFATNYVNI- 311 (399)
T ss_pred HHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccch---hHHHHHHHHHHHHHHHHHHHhccchh-
Confidence 788999876 8999999999999999999999999999999999986221 11111111111111111111111222
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhhcC
Q 011831 342 YYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGY 409 (476)
Q Consensus 342 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~ 409 (476)
.........+.+.+.+ ..+ ...++..|..|+++|+++.|+.+.+.++++.++|.+.|.+.|..+++
T Consensus 312 ~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~ 377 (399)
T TIGR00893 312 PYAALALVALGFFGLG-AGA-IGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSF 377 (399)
T ss_pred HHHHHHHHHHHHhchh-hhh-HHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCch
Confidence 2222222222233322 344 67889999999999999999999999999999999999999986534
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=299.11 Aligned_cols=379 Identities=13% Similarity=0.094 Sum_probs=263.9
Q ss_pred chHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHH
Q 011831 12 GISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWA 91 (476)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~ 91 (476)
++|..+...++.......++..++...|.+.++ |+++++.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~ 104 (452)
T PRK11273 26 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 104 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHH
Confidence 345555666667777777777778888999988 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh----hHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhh-hHHHHHHHHhhcc
Q 011831 92 FSTAAVGASQ----HFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGI-GGGVLATIMAGHQ 166 (476)
Q Consensus 92 ~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~-~g~~~~~~l~~~~ 166 (476)
++.+++++++ +++.+++.|++.|++.+...+...+.+.|++|+++|++++++++.+.++|.. .+|+++..+...
T Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~- 183 (452)
T PRK11273 105 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF- 183 (452)
T ss_pred HHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-
Confidence 9999988764 7888999999999999998888889999999999999999999999999874 455544444433
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHH
Q 011831 167 FWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQ 246 (476)
Q Consensus 167 ~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (476)
.+||+.|++.+++.++..++.+++.+|+++.....++++.+.+.++.. ++++.++.+.++.. .+..+|++.+|
T Consensus 184 ----~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~ 256 (452)
T PRK11273 184 ----NDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDY-NEKHEQELTAKQIF--MQYVLPNKLLW 256 (452)
T ss_pred ----ccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhcccccc-ccccCCCccHHHHH--HHHHHcChHHH
Confidence 599999999988887776666666565443321111111000000000 00000111112211 12366788888
Q ss_pred HHHHHHHhhhh-hhhHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhh
Q 011831 247 IIVLQGIVGSL-PWTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMG 324 (476)
Q Consensus 247 ~~~~~~~~~~~-~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~ 324 (476)
...+..++... .+....|+|.|+++ .|++..+++.......++.+++.++.|+++||+++++.. ........+..
T Consensus 257 ~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~---~~~~~~~~l~~ 333 (452)
T PRK11273 257 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG---ATGVFFMTLVT 333 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc---hHHHHHHHHHH
Confidence 77666555444 34555899999987 799999999998889999999999999999999543311 01111111111
Q ss_pred hhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhh-hhHHHHHHH
Q 011831 325 IPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSF-AAPLVGILS 403 (476)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~-~~~~~g~l~ 403 (476)
. ....+. .....+. ....+..+..|........ ....+..|.+|++.||+++|+.+...++++.+ +|.+.|.+.
T Consensus 334 ~--~~~~~~-~~~~~~~-~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~ 408 (452)
T PRK11273 334 I--ATIVYW-LNPAGNP-TVDMACMIVIGFLIYGPVM-LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 408 (452)
T ss_pred H--HHHHHH-HhcccCh-HHHHHHHHHHHHHHHhHHH-HHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 1 111111 1111221 2222334444544332222 23456679999999999999999999998775 799999999
Q ss_pred hhhh
Q 011831 404 EKMF 407 (476)
Q Consensus 404 ~~~~ 407 (476)
|+.+
T Consensus 409 ~~~g 412 (452)
T PRK11273 409 DFFG 412 (452)
T ss_pred HHhc
Confidence 9853
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=296.49 Aligned_cols=365 Identities=14% Similarity=0.128 Sum_probs=248.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcC---CCCCchhHHH---HHHHHHHHhhhhhhhHhhhhcCCchhH
Q 011831 10 VLGISLSLILINLAAIMERADENLLPSVYKEVSEAFN---AGPSDLGYLT---FIRNFVQGLSSPLAGVLVINYDRPAVL 83 (476)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~s~~~~g~~~---s~~~l~~~~~~~~~G~l~dr~Grr~~~ 83 (476)
.+++++.+...+++.+++.+|...++...|.+.+|++ .+..+.+... +..+++..++++++|+++||+|||+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l 96 (432)
T PRK10406 17 TRRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSM 96 (432)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 3455566777788999999999999999999999985 4444444444 444555559999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhH
Q 011831 84 TIGILCWAFSTAAVGASQHFL--------HVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGG 155 (476)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g 155 (476)
..+.++++++++++++++++. .++++|+++|++.|...+...++++|++|+++|+++.++.+.+...|.+++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~ 176 (432)
T PRK10406 97 LISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLA 176 (432)
T ss_pred HHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHH
Confidence 999999999999999988764 588999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHhhccc---CCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHH
Q 011831 156 GVLATIMAGHQF---WGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLES 232 (476)
Q Consensus 156 ~~~~~~l~~~~~---~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (476)
+.+...+..... ...+|||++|++.++++++...+. ...||+++.+. + +.+ +
T Consensus 177 ~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~-~~~~e~~~~~~-----------~----~~~--~------- 231 (432)
T PRK10406 177 LLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLR-RQLDETSQQET-----------R----ALK--E------- 231 (432)
T ss_pred HHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHH-hcCCCCchHHH-----------h----hhc--c-------
Confidence 887666542100 012799999999888776543332 22232211000 0 000 0
Q ss_pred HHhhhhhccchhHHHHHHHHHh--hhhhhhHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccC
Q 011831 233 WMATKAVIKVPTFQIIVLQGIV--GSLPWTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYP 309 (476)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~ 309 (476)
..+.+++++++..+.......+ ....+...+|+|.|+++ +|++..+.+...+...+...++.++.|+++||++||+.
T Consensus 232 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~ 311 (432)
T PRK10406 232 AGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTS 311 (432)
T ss_pred cccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence 0123345556665554433332 33345566899999976 89999899988888888888888999999999999863
Q ss_pred CCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhh
Q 011831 310 HSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEG 389 (476)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 389 (476)
. ......... .............+..... ....+..+..+.... ....+.+|.+|++.|+++.|+.+..++
T Consensus 312 ~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~e~fp~~~r~t~~g~~~~~g~ 382 (432)
T PRK10406 312 M------LCFGSLAAL-FTVPILSALQNVSSPYAAF-GLVMCALLIVSFYTS-ISGILKAEMFPAQVRALGVGLSYAVAN 382 (432)
T ss_pred H------HHHHHHHHH-HHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHCCCCccchhhhHHHHHHH
Confidence 1 111111111 1111111111112212211 112212222222222 356788999999999999999998877
Q ss_pred hh-hhhhhHHHHHHHhhhhcC
Q 011831 390 SF-SSFAAPLVGILSEKMFGY 409 (476)
Q Consensus 390 ~~-~~~~~~~~g~l~~~~~~~ 409 (476)
.. +...|.+.+.+ +..+.+
T Consensus 383 ~~~g~~~p~~~~~l-~~~g~~ 402 (432)
T PRK10406 383 ALFGGSAEYVALSL-KSIGME 402 (432)
T ss_pred HHHHhHHHHHHHHH-HHhCCC
Confidence 63 44677777755 554443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=294.05 Aligned_cols=350 Identities=14% Similarity=0.081 Sum_probs=257.0
Q ss_pred hHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHH
Q 011831 13 ISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAF 92 (476)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~ 92 (476)
.|.....++++.+..... ...++.+|.+++|+|+|.++.|++.+.+.+++.+++++.|+++||+|||+++..+..++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~-~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~ 86 (393)
T PRK09705 8 NFMLLVLVLIGLNMRPLL-TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAV 86 (393)
T ss_pred HHHHHHHHHHHHHcchhh-hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHH
Confidence 344444444444443333 6778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCc
Q 011831 93 STAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPG 172 (476)
Q Consensus 93 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~ 172 (476)
+.+++++++|++.+++.|+++|++.+...+....++.|++| ++|+++++++..+..+|..+++.+++.+.++ ..+
T Consensus 87 ~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~----~~~ 161 (393)
T PRK09705 87 GALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQH----SET 161 (393)
T ss_pred HHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHh----cCC
Confidence 99999999999999999999999999999999999999996 8899999999999999999999999998876 138
Q ss_pred hhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHH
Q 011831 173 WRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQG 252 (476)
Q Consensus 173 wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (476)
||+.+.+.++..++..+..+...++.++.+ + ++ + . ..++.++++..+...+..
T Consensus 162 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~------------~-------~----~~~~~l~~~~~~~l~~~~ 214 (393)
T PRK09705 162 WYQTLAWWALPAVVALFAWWWQSAREVASS--H--KT------------T-------T----TPVRVVFTPRAWTLGVYF 214 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccc--c--CC------------C-------c----CCcccccCHhHHHHHHHH
Confidence 999988776665443333222222111100 0 00 0 0 011233445555444444
Q ss_pred Hhhhhh-hhHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhh
Q 011831 253 IVGSLP-WTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFL 331 (476)
Q Consensus 253 ~~~~~~-~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (476)
.+.... +...+|+|.+++++|+++.+++...+...+++++++++.+++.||.++|+.. ..+..+..... ..
T Consensus 215 ~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~-------~~~~~l~~~~~-~~ 286 (393)
T PRK09705 215 GLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLL-------MLALVLQLVGF-CG 286 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHH-------HHHHHHHHHHH-HH
Confidence 333333 4455889999988999999999999999999999999999999999988631 11121111111 11
Q ss_pred hhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhccc-CccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhhcC
Q 011831 332 LTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVV-PAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGY 409 (476)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~ 409 (476)
+...+. +... . ...+.|++.+...+ .......+.. |++++++.+|+.+.+.++++.++|.+.|++.|..++|
T Consensus 287 ~~~~~~--~~~~-~--~~~l~g~g~g~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~ 359 (393)
T PRK09705 287 FIWLPL--QLPV-L--WAMVCGLGLGGAFP-LCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNY 359 (393)
T ss_pred HHHccc--hHHH-H--HHHHHHHhccchHH-HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 111121 1111 1 12344665555555 3444555555 4678999999999999999999999999999998766
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=290.96 Aligned_cols=338 Identities=13% Similarity=0.047 Sum_probs=245.3
Q ss_pred HHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHH
Q 011831 27 ERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHV 106 (476)
Q Consensus 27 ~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l 106 (476)
+......+++.+|.+++|+|+|+++.|++.+.+.+++.+++++.|+++||+|||+++..+......+.......++++.+
T Consensus 3 ~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (368)
T TIGR00903 3 SQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWL 82 (368)
T ss_pred hhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 34455678899999999999999999999999999999999999999999999988766655554544333334799999
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Q 011831 107 GMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVL 186 (476)
Q Consensus 107 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~ 186 (476)
++.|+++|++.+. .+.....++|++|+|+|++++++.+.+.++|.+++++++..+.+. .|||+.|++.++++++
T Consensus 83 ~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~-----~gWr~~f~~~~~l~~~ 156 (368)
T TIGR00903 83 LACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA-----GGLQLLIIPIAAVAAA 156 (368)
T ss_pred HHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cchHHHHHHHHHHHHH
Confidence 9999999999986 456667779999999999999999999999999999999999987 8999999999998888
Q ss_pred HHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhhh-hhHHHHH
Q 011831 187 IAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLP-WTAMVFF 265 (476)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 265 (476)
..++.++..||+++..++. ... ++..+++++++++|.++...+..++.... ++..+|+
T Consensus 157 ~~~~~~~~lp~~p~~~~~~------~~~---------------~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wl 215 (368)
T TIGR00903 157 GIILVLAALPALPFQAAEG------FGF---------------KDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWL 215 (368)
T ss_pred HHHHHHHHcCCCCCCCCCC------cch---------------HHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776666644321110 000 01112456788888888877776665554 5555899
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHH
Q 011831 266 TMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTY 345 (476)
Q Consensus 266 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (476)
|.|+++.|++.. .+.......+.+.++ .++++||..||+.. .............. ... .. ...+... .
T Consensus 216 p~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r---~~~~~~~~~~~a~~-~~~-~~--~~~~~~~-~ 283 (368)
T TIGR00903 216 EAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLR---SIYIRAAALLIAAF-FLA-LA--FELNRLA-L 283 (368)
T ss_pred HHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhH---HHHHHHHHHHHHHH-HHH-HH--HccccHH-H
Confidence 999988888864 566666666555555 47888887665321 11111111111111 111 11 1111122 2
Q ss_pred HHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHh
Q 011831 346 AVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSE 404 (476)
Q Consensus 346 ~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 404 (476)
.....+.+++.....+ ..+++.+|.+|++.||++.|+.+..+++++..+|.+.+.+..
T Consensus 284 ~~~~~l~~~~~~~~~~-~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~ 341 (368)
T TIGR00903 284 FAFIGIAGLLMLPAYA-IIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS 341 (368)
T ss_pred HHHHHHHHHhhhhhHH-HHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc
Confidence 2334445555554544 567889999999999999999999999999999999888773
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=309.36 Aligned_cols=383 Identities=16% Similarity=0.124 Sum_probs=274.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHH
Q 011831 10 VLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILC 89 (476)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~ 89 (476)
.+..|..+.++.++.+..+++...++.++|.+.++++++..+.+++.+++.++.+++++++|+++||+|||+++++++++
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil 241 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSV 241 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 35577788888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhccc--
Q 011831 90 WAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQF-- 167 (476)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~-- 167 (476)
.+++.++++++++++.++++|++.|++.++..+...++++|++|+++|++.+++..++..+|.++++.++..+....+
T Consensus 242 ~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~ 321 (742)
T TIGR01299 242 NGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWS 321 (742)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 999999999999999999999999999999999999999999999999999999999999999999998877764311
Q ss_pred ------CCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCC---------------Chh-----hHhhhc
Q 011831 168 ------WGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENF---------------DRD-----ELVEKG 221 (476)
Q Consensus 168 ------~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~-----~~~~~~ 221 (476)
....+||+.+++.+++.++..++.++++++|++...+++.++... ..+ ..+...
T Consensus 322 ~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~ 401 (742)
T TIGR01299 322 FQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIH 401 (742)
T ss_pred hccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhh
Confidence 112479999999888877776666667676666433322111000 000 000000
Q ss_pred C--------Cccc-----------hhHHHHHHhhhhhccch----hHHHHHHHHHhhhhhhhHHHHHHHHHHHh------
Q 011831 222 N--------TSVS-----------SVWLESWMATKAVIKVP----TFQIIVLQGIVGSLPWTAMVFFTMWFELI------ 272 (476)
Q Consensus 222 ~--------~~~~-----------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 272 (476)
. .... ......+..++.+++.+ .+...++.+......|+...|+|.++++.
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~ 481 (742)
T TIGR01299 402 QEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYA 481 (742)
T ss_pred hhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 00011122334444443 23333444444444566668999875431
Q ss_pred ------------------------------------CCC-----------------------------------------
Q 011831 273 ------------------------------------GFD----------------------------------------- 275 (476)
Q Consensus 273 ------------------------------------g~s----------------------------------------- 275 (476)
|+.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 561 (742)
T TIGR01299 482 ALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDF 561 (742)
T ss_pred hhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccch
Confidence 000
Q ss_pred --------------------------------hhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHh
Q 011831 276 --------------------------------HSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFM 323 (476)
Q Consensus 276 --------------------------------~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~ 323 (476)
.........+..++.+++.++.|+++||+|||+. ...+.++
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~-------l~~~~~l 634 (742)
T TIGR01299 562 EEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRM-------LAGSMVL 634 (742)
T ss_pred hhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH-------HHHHHHH
Confidence 0011233456678899999999999999999973 2222222
Q ss_pred hhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHH
Q 011831 324 GIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILS 403 (476)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~ 403 (476)
..++..+.. ...+... ..+..++.+++.+...+ ...++++|.+|++.|++++|+.+....+|++++|.++|.+.
T Consensus 635 sai~~ll~~----~~~s~~~-ll~~~~l~g~~~~~~~~-~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~ 708 (742)
T TIGR01299 635 SCISCFFLS----FGNSESA-MIALLCLFGGLSIAAWN-ALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFV 708 (742)
T ss_pred HHHHHHHHH----HHccHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222211111 1112122 23334455665555555 67899999999999999999999999999999999999988
Q ss_pred hh
Q 011831 404 EK 405 (476)
Q Consensus 404 ~~ 405 (476)
+.
T Consensus 709 ~~ 710 (742)
T TIGR01299 709 GI 710 (742)
T ss_pred Hh
Confidence 75
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=293.09 Aligned_cols=343 Identities=13% Similarity=0.116 Sum_probs=262.2
Q ss_pred HHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHH
Q 011831 27 ERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHV 106 (476)
Q Consensus 27 ~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l 106 (476)
........++..|.+.+|+|++.++.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++++++++++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (377)
T TIGR00890 15 TSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAAL 94 (377)
T ss_pred HhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33345678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Q 011831 107 GMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVL 186 (476)
Q Consensus 107 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~ 186 (476)
++.|++.|++.+...+.....+.+++| |+|+++.++...+.++|..+++++.+.+.+. .+||+.|++.+++.++
T Consensus 95 ~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~f~~~~~~~~~ 168 (377)
T TIGR00890 95 YLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINL-----EGVPAAFIYMGIIFLL 168 (377)
T ss_pred HHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhc-----ccHHHHHHHHHHHHHH
Confidence 999999999999988888889999995 6899999999999999998877777777765 7999999999998888
Q ss_pred HHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhhhh-hHHHHH
Q 011831 187 IAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPW-TAMVFF 265 (476)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 265 (476)
..+..+++.++++++..+++++. ++...+.++.++++.++......+...... ....+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (377)
T TIGR00890 169 VIVLGAFLIGYPPGQLIKTNIEV--------------------SVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLY 228 (377)
T ss_pred HHHHHHHheecCchhccccCccc--------------------chhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHH
Confidence 87777776665543221110000 000112234566677666555444443332 333566
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHH
Q 011831 266 TMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTY 345 (476)
Q Consensus 266 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (476)
+.+.+++|.++.+.+...+...++.++++++.|++.||++||+... .+........ ......+ ... ....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~-------~~~~~~~~~~-~~~~~~~-~~~-~~~~ 298 (377)
T TIGR00890 229 KPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMS-------IVFGISAVGM-AAMLFIP-MLN-DVLF 298 (377)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------HHHHHHHHHH-HHHHHcc-cch-hHHH
Confidence 7777888999989999999999999999999999999999887421 1111111111 1111111 111 1222
Q ss_pred HHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 346 AVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 346 ~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
.....+.|++.+...+ ....+..|.+|+++|+++.|+.+...+++..++|.+.|.+.|..
T Consensus 299 ~~~~~~~g~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 358 (377)
T TIGR00890 299 LATVALVFFTWGGTIS-LFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI 358 (377)
T ss_pred HHHHHHHHHHhccchh-ccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2334555666655555 56778899999999999999999999999999999999999874
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=307.82 Aligned_cols=382 Identities=14% Similarity=0.074 Sum_probs=279.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHhccchhhHHHHHH----------------------hcCCCCCchhHHHHHHHHHHHhhh
Q 011831 10 VLGISLSLILINLAAIMERADENLLPSVYKEVSE----------------------AFNAGPSDLGYLTFIRNFVQGLSS 67 (476)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----------------------~~~~s~~~~g~~~s~~~l~~~~~~ 67 (476)
.+.++.+..+++++..+++.++...+...+.+.+ |++++..+.|++.+.+.+++.+++
T Consensus 14 ~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~ 93 (465)
T TIGR00894 14 CSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQ 93 (465)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHH
Confidence 4567888888899999999999999998888876 789999999999999999999999
Q ss_pred hhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHH
Q 011831 68 PLAGVLVINYDRPAVLTIGILCWAFSTAAVGAS--QHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLS 145 (476)
Q Consensus 68 ~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 145 (476)
++.|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...|....+++|++|+++|++++++..
T Consensus 94 ~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 173 (465)
T TIGR00894 94 IPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMST 173 (465)
T ss_pred cchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999887654 558889999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHhhcccCCCC-chhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCc
Q 011831 146 LVGTMGGIGGGVLATIMAGHQFWGVP-GWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTS 224 (476)
Q Consensus 146 ~~~~lG~~~g~~~~~~l~~~~~~~~~-~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (476)
.+..+|.++++++++.+.+. . +||+.|++.++++++..++.+.+++|+++..++.+++|++.. ++.. +++.
T Consensus 174 ~~~~~g~~i~~~l~~~l~~~-----~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i-~~~~--~~~~ 245 (465)
T TIGR00894 174 SGFQLGTFIFLPISGWLCES-----WGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYI-NSSL--QGQK 245 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhc-----cCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHH-Hhhc--cccc
Confidence 99999999999999999875 4 999999999999888877777766665433222111111100 0000 0000
Q ss_pred cchhHHHHHHhhhhhccchhHHHHHHHHHhhhhh-hhHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhh
Q 011831 225 VSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLP-WTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVAD 302 (476)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d 302 (476)
.+.. ...++++.++++.++...+..+..... +...+|+|.|+++ +|++..+.+...+...++.+++.++.|+++|
T Consensus 246 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d 322 (465)
T TIGR00894 246 GSTR---QSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLAD 322 (465)
T ss_pred CCCC---CCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 112355677888888777766665554 4445899999987 8999999999999999999999999999999
Q ss_pred hhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHH
Q 011831 303 RISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYA 382 (476)
Q Consensus 303 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g 382 (476)
|+++|+.......................+.......+ .....+.+.+.+.+.+...+ .......|..| +.+|.+.|
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~-~~~g~~~g 399 (465)
T TIGR00894 323 FLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAA-FYLTIIILTLANAVSSGPLA-GVLINSLDLAP-RFLGFIKG 399 (465)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHhhhhhh-hhhhchhhcCh-hHHHHHHH
Confidence 98876543211110011111110001111111111122 22222333333443333333 34455667676 58999999
Q ss_pred HHHhhhhhhhhhhhHHHHHHHhh
Q 011831 383 FDRAFEGSFSSFAAPLVGILSEK 405 (476)
Q Consensus 383 ~~~~~~~~~~~~~~~~~g~l~~~ 405 (476)
+.+..+++++.++|.+.|.+.+.
T Consensus 400 ~~~~~~~l~~~i~p~l~g~~~~~ 422 (465)
T TIGR00894 400 ITGLPGFIGGLIASTLAGNILSQ 422 (465)
T ss_pred HHHHHHHHHHHHHHHhhheeeCC
Confidence 99999999999999999988875
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=294.14 Aligned_cols=364 Identities=15% Similarity=0.094 Sum_probs=255.0
Q ss_pred hHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHH
Q 011831 13 ISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAF 92 (476)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~ 92 (476)
+++.+.......+....+.....+..|.+.+|+|++.++.+++.+.+.+++.+++++.|+++||+|||+++..+.+++++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~ 113 (476)
T PLN00028 34 HMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAP 113 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 45556666666777777777788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcc----cC
Q 011831 93 STAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQ----FW 168 (476)
Q Consensus 93 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~----~~ 168 (476)
+.++++++++++.+++.|++.|++.+... ....+++|++|+++|++++++.....++|..+++.+.+.+.... ..
T Consensus 114 ~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~ 192 (476)
T PLN00028 114 AVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAP 192 (476)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999987654 45678999999999999999998888888887777665553210 01
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHH
Q 011831 169 GVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQII 248 (476)
Q Consensus 169 ~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (476)
+..|||+.|++.++++++..++.+++++++++...+ +.+ ++.+ .++ ++..+.+++.++++.+|..
T Consensus 193 ~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~--~~~---------~~~~-~~~---~~~~~~~~~~~~~~~~~~~ 257 (476)
T PLN00028 193 SFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYR--ELK---------KSGT-MPK---DSFSKVLRYGVTNYRTWIL 257 (476)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchh--hHH---------hcCc-ccc---ccHHHHHHHHHcCchhHHH
Confidence 125899999999999888777777666554322100 000 0000 000 0112234456677776665
Q ss_pred HHHHHhhhh-hhhHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhh
Q 011831 249 VLQGIVGSL-PWTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIP 326 (476)
Q Consensus 249 ~~~~~~~~~-~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 326 (476)
.+..+.... .+...+++|.|+.+ +|+++.+++.+.+...+++++++++.|+++||+++|+..+.+.........+...
T Consensus 258 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i 337 (476)
T PLN00028 258 ALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGV 337 (476)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHH
Confidence 555444333 34445788999876 7999999999999999999999999999999999875433333333322222211
Q ss_pred HHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHH
Q 011831 327 FSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLV 399 (476)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~ 399 (476)
.. . .....++. ......+++.+++.+.... ..+++..+..| +++|++.|+.+..+++++.++|.+.
T Consensus 338 ~~--~--~~~~~~~~-~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~ 403 (476)
T PLN00028 338 FC--I--WLGRANSL-GAAIVVMILFSIFVQAACG-ATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLF 403 (476)
T ss_pred HH--H--HhcccchH-HHHHHHHHHHHHHHHHhhh-hhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHH
Confidence 11 1 11112221 2223334445555444444 45666677554 7899999998776666555555443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=286.62 Aligned_cols=349 Identities=15% Similarity=0.160 Sum_probs=256.8
Q ss_pred HHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHH
Q 011831 16 SLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTA 95 (476)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~ 95 (476)
.+..+.+..+..........+.+|.+.+|+|.+.++.|++.+.+.+++.++++++|+++||+|||+++..+.++.+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 83 (382)
T PRK10091 4 VILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNA 83 (382)
T ss_pred hHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHH
Confidence 34566667778888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhH
Q 011831 96 AVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRC 175 (476)
Q Consensus 96 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~ 175 (476)
++++++|++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++++++.+.+. .+||+
T Consensus 84 l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-----~gwr~ 158 (382)
T PRK10091 84 MFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQE-----FSWRY 158 (382)
T ss_pred HHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhh-----ccHHH
Confidence 9999999999999999999999998898899999999999999999999999999999999999999886 89999
Q ss_pred HHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhh
Q 011831 176 AFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVG 255 (476)
Q Consensus 176 ~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (476)
.|++.+++.++..+..++..||++++.+.+ .++ .. +.+|++..+.......+.
T Consensus 159 ~f~~~~~~~~~~~~~~~~~lp~~~~~~~~~-----------------------~~~---~~-~~~~~~~~~~~~~~~~~~ 211 (382)
T PRK10091 159 TFLLIAVFNIAVLASIYFWVPDIRDEAKGG-----------------------LRE---QF-HFLRSPAPWLIFAATMFG 211 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcccccC-----------------------HHH---HH-HHhcChHHHHHHHHHHHH
Confidence 999999887776665555555432110000 011 11 234555555544433333
Q ss_pred hh-hhhHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhh
Q 011831 256 SL-PWTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLT 333 (476)
Q Consensus 256 ~~-~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (476)
.. .+...++++.++++ .|+++.+.+.+.+...++.++++++.+++.||+++|+.. ..+..+..... +...
T Consensus 212 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~-------~~~~~~~~i~~-~~~~ 283 (382)
T PRK10091 212 NAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIA-------AVTDFIIVLAL-LMLF 283 (382)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHH-------HHHHHHHHHHH-HHHH
Confidence 22 23334566777765 899999999999999999999999999999999988631 11111111111 1111
Q ss_pred ccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhhcC
Q 011831 334 AIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGY 409 (476)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~ 409 (476)
.. .+..+ ......++.+.+.....++.......+..|++.++.+ ..+...++|..+||.+.|.+.|..++|
T Consensus 284 ~~--~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~ 354 (382)
T PRK10091 284 FF--GGMKT-ASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAY 354 (382)
T ss_pred HH--HhhHH-HHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCc
Confidence 11 11112 2223333444443333332233344554555555554 346778899999999999999986666
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=283.11 Aligned_cols=352 Identities=14% Similarity=0.107 Sum_probs=266.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHH
Q 011831 10 VLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILC 89 (476)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~ 89 (476)
.++.|+.+..+....+..........+.+|.+.+|+|+++++.|+..+.+.++..+++++.|+++||+|||+++..+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~ 94 (394)
T PRK10213 15 TRPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVL 94 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH
Confidence 44566666666666555655555666778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCC
Q 011831 90 WAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWG 169 (476)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~ 169 (476)
.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+|+|++++++...+.++|..++|++++.+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~---- 170 (394)
T PRK10213 95 LTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL---- 170 (394)
T ss_pred HHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHH
Q 011831 170 VPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIV 249 (476)
Q Consensus 170 ~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (476)
.+||+.|++.++++++..+......||++.+.++ ..++.++.+++|.++...
T Consensus 171 -~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~~~~---------------------------~~~~~~~~l~~~~~~~~~ 222 (394)
T PRK10213 171 -IGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPSH---------------------------QKQNTFRLLQRPGVMAGM 222 (394)
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHHCCCCCccccc---------------------------chhHHHHHhcCHHHHHHH
Confidence 8999999998877766554444333332210000 001123456777777655
Q ss_pred HHHHhhhh-hhhHHHHH-HHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhH
Q 011831 250 LQGIVGSL-PWTAMVFF-TMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPF 327 (476)
Q Consensus 250 ~~~~~~~~-~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~ 327 (476)
+..+.... .+...++. |.+.+++|+++.+.+......+++.+++.++.+++.||.+++. ...... +....
T Consensus 223 ~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~-------l~~~~~-~~~~~ 294 (394)
T PRK10213 223 IAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLA-------LAGAPL-VLAVS 294 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhH-------HHHHHH-HHHHH
Confidence 54333333 33344565 6676779999999999999999999999999999999854332 111111 11111
Q ss_pred HHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhh
Q 011831 328 SWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMF 407 (476)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~ 407 (476)
...... . .++. +......++.|++.+...+ ...+.+++..| +++++..+......+++..+||.++|++.|..+
T Consensus 295 ~~~l~~-~--~~~~-~~~~~~~~l~G~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g 368 (394)
T PRK10213 295 ALVLTL-W--GSDK-IVATGVAIIWGLTFALVPV-GWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIG 368 (394)
T ss_pred HHHHHH-H--hhhH-HHHHHHHHHHHHHHHhhhH-HHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 111111 1 1222 3344566777888777666 66777888887 567788888888889999999999999999753
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=285.39 Aligned_cols=364 Identities=15% Similarity=0.042 Sum_probs=277.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHH
Q 011831 10 VLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILC 89 (476)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~ 89 (476)
+++.+.....+.+..+...++...+.+.+|.+.+++|.++.+.++..+.+.+++.+++++.|+++||+|||+++..+..+
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 87 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAF 87 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 46667777788888888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCC
Q 011831 90 WAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWG 169 (476)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~ 169 (476)
.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|.+.+++......+|..++|.+++.+.+.
T Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~---- 163 (406)
T PRK15402 88 FILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHV---- 163 (406)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----
Confidence 9999999999999999999999999999998899999999999999999999999988899999999999999887
Q ss_pred CCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHH
Q 011831 170 VPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIV 249 (476)
Q Consensus 170 ~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (476)
.+||+.|++.++..++..+..++..||++...+++ ...++..++.+..+++|.++...
T Consensus 164 -~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~ 221 (406)
T PRK15402 164 -LPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEK---------------------LSLKELGRDYKLVLKNRRFVAGA 221 (406)
T ss_pred -cCccHHHHHHHHHHHHHHHHHHHhCCCCCcccccc---------------------ccHHHHHHHHHHHHcCcHHHHHH
Confidence 89999999988888776665555444432211000 00122334556678888877766
Q ss_pred HHHHhhhhhh-hHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhH
Q 011831 250 LQGIVGSLPW-TAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPF 327 (476)
Q Consensus 250 ~~~~~~~~~~-~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~ 327 (476)
+...+....+ ....+.|.++++ +|+++.+.+.......++.+++.++.+++.||+++|+.. ..+.......
T Consensus 222 ~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~-------~~~~~~~~~g 294 (406)
T PRK15402 222 LALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLI-------RMGLWPMVAG 294 (406)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH-------HHHHHHHHHH
Confidence 6554443332 333567888765 899999999888888888999999999999999988631 1111111111
Q ss_pred HHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhh
Q 011831 328 SWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMF 407 (476)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~ 407 (476)
..............+........+.|++.+...+ ........ .+++++|++.+..+....++..+|+.+.+.+.+..+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~-~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 372 (406)
T PRK15402 295 LLLAALATVISSHAYLWLTAGLSLYAFGIGLANA-GLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGG 372 (406)
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhh-hHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence 1111111101112233344566677777776655 33444433 345899999999999999999999999999988754
Q ss_pred c
Q 011831 408 G 408 (476)
Q Consensus 408 ~ 408 (476)
.
T Consensus 373 ~ 373 (406)
T PRK15402 373 N 373 (406)
T ss_pred h
Confidence 3
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=286.29 Aligned_cols=364 Identities=13% Similarity=0.149 Sum_probs=248.5
Q ss_pred chHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHH-HHH-----HHHHHhhhhhhhHhhhhcCCchhHHH
Q 011831 12 GISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLT-FIR-----NFVQGLSSPLAGVLVINYDRPAVLTI 85 (476)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~-s~~-----~l~~~~~~~~~G~l~dr~Grr~~~~~ 85 (476)
.|++....++++.+++.+|+..+++..|.+.+|++.++.+.+.+. +.. .+...+++++.|+++||+|||+.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~ 91 (434)
T PRK15075 12 SKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIV 91 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHH
Confidence 455578888999999999999999999999999999888876543 332 22334788999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHH--------HHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHH
Q 011831 86 GILCWAFSTAAVGASQHFLH--------VGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGV 157 (476)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~ 157 (476)
+.+++.+++++++++++++. +++.|+++|++.+...+....+++|++|+++|++++++.+.+.++|..+++.
T Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~ 171 (434)
T PRK15075 92 TLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAAL 171 (434)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999874 6889999999999999999999999999999999999999999999998888
Q ss_pred HHHHHhhccc---CCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHH
Q 011831 158 LATIMAGHQF---WGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWM 234 (476)
Q Consensus 158 ~~~~l~~~~~---~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (476)
+++.+..... ....|||++|++..+...+ .......+||++ +.. + ++++.+ .++.
T Consensus 172 ~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~-~~~~~~~~~e~~---~~~----------~--~~~~~~----~~~~-- 229 (434)
T PRK15075 172 LGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPF-IFLIRRSLEETE---EFL----------A--RKHRPS----MREI-- 229 (434)
T ss_pred HHHHHHHhCCHHHHhccchHHHHHHHHHHHHH-HHHHHHhcCCCH---HHH----------H--hhhccc----cccH--
Confidence 8887743110 0137999999985543221 111111111110 000 0 000000 0111
Q ss_pred hhhhhccchhHHHH-HHHHHhh-hhhhhHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCC
Q 011831 235 ATKAVIKVPTFQII-VLQGIVG-SLPWTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHS 311 (476)
Q Consensus 235 ~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~ 311 (476)
.+...+++..+.. ....+.. ...+....|.|.|+++ +|+++.+.+.......++++++.++.|+++||++||+..
T Consensus 230 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~- 307 (434)
T PRK15075 230 -FRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVL- 307 (434)
T ss_pred -HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH-
Confidence 1112222222222 2222222 2234445789999987 899999999888888999999999999999999998732
Q ss_pred cchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhh-
Q 011831 312 GRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGS- 390 (476)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~- 390 (476)
.. +..................++ .........+.+++.+...+ ....+..|.+|++.|+++.|+.+.+.+.
T Consensus 308 -----~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~-~~~~~~~e~~p~~~rg~~~g~~~~~~~~~ 379 (434)
T PRK15075 308 -----IA-FTVLAILTAYPALSWLVAAPS-FARMLAVELWLSFLYGSYNG-AMVVALTEVMPAEVRTAGFSLAYSLATAI 379 (434)
T ss_pred -----HH-HHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHHh-hHHHHHHHHCCCCccchheeHHHHHHHHH
Confidence 11 111111111111111111222 11222233344455554444 4567889999999999999997666665
Q ss_pred hhhhhhHHHHHHHhhhh
Q 011831 391 FSSFAAPLVGILSEKMF 407 (476)
Q Consensus 391 ~~~~~~~~~g~l~~~~~ 407 (476)
++.++|.+.|++.|..+
T Consensus 380 ~g~~~p~~~g~i~~~~g 396 (434)
T PRK15075 380 FGGFTPAISTWLIHVTG 396 (434)
T ss_pred HhhhHHHHHHHHHHhcC
Confidence 57899999999999864
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=284.77 Aligned_cols=352 Identities=13% Similarity=0.039 Sum_probs=264.6
Q ss_pred chHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHH
Q 011831 12 GISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWA 91 (476)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~ 91 (476)
++++.....++..++.+.+....++.+|.+.+++|+|.++.+++.+.+.+++.+++++.|++.||+|||+++..+.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~ 83 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI 83 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45566777788889999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCC
Q 011831 92 FSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVP 171 (476)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~ 171 (476)
++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|+++++..+....+|..++|.+.+.+... ..
T Consensus 84 i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~----~~ 159 (394)
T PRK03699 84 LAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR----SI 159 (394)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998887642 16
Q ss_pred chhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHH
Q 011831 172 GWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQ 251 (476)
Q Consensus 172 ~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (476)
+||+.|.+.+++.++..++.++ .+.|+.++ +. + ++ ++.. .+..+ ++.++...+.
T Consensus 160 gw~~~f~~~~~~~~~~~~~~~~-~~~p~~~~-~~-~-~~----------~~~~-----------~~~~~-~~~~~~~~~~ 213 (394)
T PRK03699 160 EWYWVYACIGLVYVAIFILTLF-SEFPALGK-HA-P-KA----------DKPV-----------AKEKW-GIGVLFLAIA 213 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHHHh-cCCccccc-cC-c-cc----------cCcc-----------ccccC-ChHHHHHHHH
Confidence 9999999988877666554443 22221111 10 0 00 0000 00011 2334443333
Q ss_pred HHhhhh-hhhHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHH
Q 011831 252 GIVGSL-PWTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSW 329 (476)
Q Consensus 252 ~~~~~~-~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (476)
.++... .+....|.|.|+++ +|+|+.+++.+.+...++..+++++.+++.||+++|+.. .. ...+.....
T Consensus 214 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l------~~-~~~~~~~~~- 285 (394)
T PRK03699 214 ALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRIL------TV-LAGLALVLM- 285 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHH------HH-HHHHHHHHH-
Confidence 333333 34455899999976 899999999999999999999999999999999998732 11 111111111
Q ss_pred hhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhh
Q 011831 330 FLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMF 407 (476)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~ 407 (476)
.. ... .++... .....+..|++.+...+ ...+...|..| +.+++..|......++|..++|.+.|++.|..+
T Consensus 286 ~~-~~~--~~~~~~-~~~~~~~~G~~~~~~~~-~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g 357 (394)
T PRK03699 286 YL-FVN--TDDPSH-LLYAILGLGFFSSAIYT-TIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG 357 (394)
T ss_pred HH-HHH--cCCchH-HHHHHHHHHHHHHHHHH-HHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC
Confidence 11 111 122122 33445667776665555 45566677666 556788899999999999999999999999853
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=285.46 Aligned_cols=367 Identities=13% Similarity=0.107 Sum_probs=251.7
Q ss_pred cchHHHHHHHHHHHHHHHHHhccchhhHHH-HHHhc--CCCCCchhHHH-----HHHHHHHHhhhhhhhHhhhhcCCchh
Q 011831 11 LGISLSLILINLAAIMERADENLLPSVYKE-VSEAF--NAGPSDLGYLT-----FIRNFVQGLSSPLAGVLVINYDRPAV 82 (476)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~--~~s~~~~g~~~-----s~~~l~~~~~~~~~G~l~dr~Grr~~ 82 (476)
.++++......++.+++.+|...++...|. +.+++ +.++. .+++. ++..++..+++++.|+++||+|||++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~ 96 (438)
T PRK09952 18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRM 96 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHH
Confidence 456677888888999999999999888874 55565 66665 56654 34556678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhh
Q 011831 83 LTIGILCWAFSTAAVGASQHFL--------HVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIG 154 (476)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~ 154 (476)
+..+.+++++++++++++++++ .++++|+++|++.|..++....++.|++|+|+|++..+..+.+..+|.++
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l 176 (438)
T PRK09952 97 LMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLL 176 (438)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 48889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccc---CCCCchhHHHHHHHHHHHHHHHHhheeeccCCC-CCCCccCCCCCCChhhHhhhcCCccchhHH
Q 011831 155 GGVLATIMAGHQF---WGVPGWRCAFILMATLSVLIAFLVLVFVVDPRK-KASTFHGTGENFDRDELVEKGNTSVSSVWL 230 (476)
Q Consensus 155 g~~~~~~l~~~~~---~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (476)
+..+...+..... ...++||++|++.+++.++...+ ...+||+++ ...+.+.++ .+ ++...
T Consensus 177 ~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l-~~~~~es~~~~~~~~~~~~------------~~-~~~~~- 241 (438)
T PRK09952 177 STGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWV-RNGMEESAEFEQQQHEQAA------------AK-KRIPV- 241 (438)
T ss_pred HHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHH-HHhCCCChhHHHHHhhccc------------cc-ccCCH-
Confidence 9888777653210 01279999999988775443222 222233221 111100000 00 00000
Q ss_pred HHHHhhhhhccchhHHHHHH-HHHh-hhhhhhHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccc
Q 011831 231 ESWMATKAVIKVPTFQIIVL-QGIV-GSLPWTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQA 307 (476)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~ 307 (476)
.+.++++|..+.... ..+. ....+...+|.|.|+++ +|++...........++..+++.++.|+++||++||
T Consensus 242 -----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr 316 (438)
T PRK09952 242 -----IEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRR 316 (438)
T ss_pred -----HHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 112334444444332 2222 23345555789999875 888887665566666777888899999999999998
Q ss_pred cCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhh
Q 011831 308 YPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAF 387 (476)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 387 (476)
+.. ..+..+............... +.........++.+++.+...+ ..+++..|.+|++.|+++.|+.+..
T Consensus 317 ~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~e~~p~~~r~tg~g~~~~~ 387 (438)
T PRK09952 317 RVY-------ITGALIGTLSAFPFFMALEAQ-SIFWIVFFSIMLANIAHDMVVC-VQQPMFTEMFGASYRYSGAGVGYQV 387 (438)
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCcchhHHHHhHHHHH
Confidence 732 111211111111111111111 2222233344445666555555 5678999999999999999997766
Q ss_pred hh-hhhhhhhHHHHHHHhhhh
Q 011831 388 EG-SFSSFAAPLVGILSEKMF 407 (476)
Q Consensus 388 ~~-~~~~~~~~~~g~l~~~~~ 407 (476)
.. +++.++|.+.+++.|..+
T Consensus 388 ~~~lgg~~~p~i~g~l~~~~~ 408 (438)
T PRK09952 388 ASVVGGGFTPFIAAALVTYFG 408 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 55 788899999999998653
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=292.12 Aligned_cols=383 Identities=14% Similarity=0.099 Sum_probs=258.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHhc--------CCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCch
Q 011831 10 VLGISLSLILINLAAIMERADENLLPSVYKEVSEAF--------NAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPA 81 (476)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~ 81 (476)
.+...+......++.+.++++...+++..|.+++++ +.+..+.+++.+.+.++..++++++|+++||+|||+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~ 86 (479)
T PRK10077 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD 86 (479)
T ss_pred chHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 345566777778889999999999999999999987 788899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhh------------hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhh
Q 011831 82 VLTIGILCWAFSTAAVGAS------------QHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGT 149 (476)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 149 (476)
+++.+.++..++.++++++ +.++.+++.|+++|++.|...+...++++|++|+++|++++++.+.+..
T Consensus 87 ~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~ 166 (479)
T PRK10077 87 SLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAII 166 (479)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHH
Confidence 9999999999998888763 2356788999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHhhccc---CCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhc-CCcc
Q 011831 150 MGGIGGGVLATIMAGHQF---WGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKG-NTSV 225 (476)
Q Consensus 150 lG~~~g~~~~~~l~~~~~---~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 225 (476)
+|.++++.++..+..... ....+||+.|++.+++.++..+..++++++|++...++++++.+ +..++.. ....
T Consensus 167 ~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~---~~~~~~~~~~~~ 243 (479)
T PRK10077 167 FGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAE---GILRKIMGNTLA 243 (479)
T ss_pred HHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHH---HHHHHHcCChhH
Confidence 999999888776653210 12369999999998888777666555544443321111111100 0000000 0000
Q ss_pred chhHHHHHHhhh-------hhccchhHHHHH---HHHHhhhhhh-hHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhhh
Q 011831 226 SSVWLESWMATK-------AVIKVPTFQIIV---LQGIVGSLPW-TAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGS 294 (476)
Q Consensus 226 ~~~~~~~~~~~~-------~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~ 294 (476)
+...++.....+ ..+......... ...+.....+ ....+.|.+.++.|.+...........++..+++.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~ 323 (479)
T PRK10077 244 TQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFT 323 (479)
T ss_pred HHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHH
Confidence 000111111110 111100000000 0111111112 22245688888899988777777778888999999
Q ss_pred chhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCc
Q 011831 295 FLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPA 374 (476)
Q Consensus 295 ~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~ 374 (476)
++.+++.||++||+.. ..+..+................. .........+.+.+.+....|..+.++.|.+|+
T Consensus 324 ~~~g~l~dr~g~r~~~-------i~~~~~~~v~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 395 (479)
T PRK10077 324 VLAIMTVDKFGRKPLQ-------IIGALGMAIGMFSLGTAFYTQAP-GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN 395 (479)
T ss_pred HHHHHHHHHhcChHHH-------HHhHHHHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHhccccchhHHHhHhhCCh
Confidence 9999999999988631 22222211111111111111111 112223334444444433333678999999999
Q ss_pred cchhhHHHHHHhhhhhhhhhhhHHHHHHH
Q 011831 375 KHRTMIYAFDRAFEGSFSSFAAPLVGILS 403 (476)
Q Consensus 375 ~~~g~~~g~~~~~~~~~~~~~~~~~g~l~ 403 (476)
++|+++.|+.+.+.+++..+++.+.+.+.
T Consensus 396 ~~r~~~~g~~~~~~~~g~~~~~~~~p~~~ 424 (479)
T PRK10077 396 AIRGKALAIAVAAQWIANYFVSWTFPMMD 424 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999988877665
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=269.93 Aligned_cols=361 Identities=14% Similarity=0.112 Sum_probs=293.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHH
Q 011831 9 KVLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGIL 88 (476)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~ 88 (476)
.++.+++.+....+...+..+...+++++.+.+.+|+|+|++|.+++.++..+...+..++.|.+.||+|.|++..++.+
T Consensus 8 ~k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~ 87 (417)
T COG2223 8 GKRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSML 87 (417)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHH
Confidence 35566778888888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHH---HHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhc
Q 011831 89 CWAFSTAAVGASQHFL---HVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGH 165 (476)
Q Consensus 89 ~~~~~~~~~~~~~~~~---~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~ 165 (476)
+..+-.+..+++.+.+ ++++.+++.|++ |.......+++++|||||++|.++|++. ..|+|..+...++..+...
T Consensus 88 l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~ 165 (417)
T COG2223 88 LLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVA 165 (417)
T ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHH
Confidence 9999999999986554 999999999999 5566777899999999999999999999 9999999999999999987
Q ss_pred ccCCCCc---hhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHH-Hhhhhhcc
Q 011831 166 QFWGVPG---WRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESW-MATKAVIK 241 (476)
Q Consensus 166 ~~~~~~~---wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 241 (476)
.+ ||..-.+..+..++..+..++..+|.++.+... ++.. .+.+.+++
T Consensus 166 -----~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~------------------------~~~~~~~~~~v~~ 216 (417)
T COG2223 166 -----FGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASV------------------------KPQLPAQLKAVFS 216 (417)
T ss_pred -----HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccc------------------------cccchhHHHHHhc
Confidence 77 999999999998888888888888766642222 1111 45566788
Q ss_pred chhHHHHHHHHHhhhhhhhHH-HHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHH
Q 011831 242 VPTFQIIVLQGIVGSLPWTAM-VFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQF 319 (476)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 319 (476)
++..|.+.+..+..+..+..+ .++|.|+++ +|.++.++|.+.....+.+.+.++++|+++||+|.+|.. . .
T Consensus 217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~------~-~ 289 (417)
T COG2223 217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVT------L-A 289 (417)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHH------H-H
Confidence 888898888888888876666 789999987 999999999999999999999999999999999988742 1 1
Q ss_pred HHHhhhhHHHhhhhccccC--cchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhH
Q 011831 320 SAFMGIPFSWFLLTAIPQS--VSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAP 397 (476)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~ 397 (476)
.......+..+.....+.. ..........++..++..+.... ..+.++...+| ++.|.+.|+...++++|+..-|.
T Consensus 290 ~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnG-svfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~ 367 (417)
T COG2223 290 VFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNG-SVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPL 367 (417)
T ss_pred HHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcc-hheeechHHHH-hhhhHHHHHHHHhccccccchhH
Confidence 1111111111222121111 12233344445555555555555 66788888887 58899999999999999999999
Q ss_pred HHHHHHhhhhcC
Q 011831 398 LVGILSEKMFGY 409 (476)
Q Consensus 398 ~~g~l~~~~~~~ 409 (476)
..|...+.++.+
T Consensus 368 ~~g~~~~~tg~~ 379 (417)
T COG2223 368 AFGVSLDLTGSY 379 (417)
T ss_pred HHHHHHHhcccH
Confidence 999999998765
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=286.18 Aligned_cols=368 Identities=15% Similarity=0.160 Sum_probs=272.8
Q ss_pred HHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhh
Q 011831 23 AAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQH 102 (476)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~ 102 (476)
.++....++..++...|.+.+++|.++++.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 82 (379)
T TIGR00881 3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTS 82 (379)
T ss_pred hhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhh
Confidence 45677788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHH-HHHHHHhhcccCCCCchhHHHHHHH
Q 011831 103 FLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGG-VLATIMAGHQFWGVPGWRCAFILMA 181 (476)
Q Consensus 103 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~-~~~~~l~~~~~~~~~~wr~~f~i~~ 181 (476)
++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+.++|..+++ .++..+.+. .+||+.|++.+
T Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 157 (379)
T TIGR00881 83 LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL-----YSWHWVFIVPG 157 (379)
T ss_pred HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc-----CCchhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 566666665 79999999999
Q ss_pred HHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhhh-hh
Q 011831 182 TLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLP-WT 260 (476)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 260 (476)
++.++..++.++..+++++.....++++++.+..+...++.+++. +......+..+++|.++...+..+..... ..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (379)
T TIGR00881 158 IIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEEL---TKKQIFLQYVLLNKVLWYISLGYVFVYVVRTG 234 (379)
T ss_pred HHHHHHHHHHheeeCCCccccccCccccCcccccccccccccccc---cchHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 888877777777666654432221111111100000000000000 11122334567778877766655555444 34
Q ss_pred HHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCc
Q 011831 261 AMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSV 339 (476)
Q Consensus 261 ~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (476)
...+.|.|+++ .|+++.+.+...+...++.+++.++.+++.||..+|+.. ..... ............ ......
T Consensus 235 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~----~~~~~-~~~~~~~~~~~~-~~~~~~ 308 (379)
T TIGR00881 235 ILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRG----PLAVF-FMALIIVSLLVY-WLNPAA 308 (379)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcch----HHHHH-HHHHHHHHHHHH-hcCcch
Confidence 44788999876 899999999999999999999999999999987544321 11111 111111111111 111111
Q ss_pred chHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 340 SNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 340 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
+ ........+..|+......+ ....+..|..|+++|+++.|+.+...++++.++|.+.|.+.|..
T Consensus 309 ~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 373 (379)
T TIGR00881 309 N-PLMDLICLFALGFLVYGPQM-LIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGF 373 (379)
T ss_pred h-HHHHHHHHHHHHHHHhhhhH-HHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhh
Confidence 2 22233444555554443333 44677889999999999999999999999999999999999984
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=286.67 Aligned_cols=372 Identities=12% Similarity=0.182 Sum_probs=280.6
Q ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHH
Q 011831 15 LSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFST 94 (476)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~ 94 (476)
+.+..++++.++..++...+++.+|.+.+|+|.++.+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 89 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGS 89 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 34566777888888898889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchh
Q 011831 95 AAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWR 174 (476)
Q Consensus 95 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr 174 (476)
++++++++++.+++.|+++|++.+...|...+++.|++|+++|+++.++.....++|..++|.+++.+.+. .+||
T Consensus 90 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~-----~gw~ 164 (471)
T PRK10504 90 LFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY-----ASWH 164 (471)
T ss_pred HHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh-----ccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 8999
Q ss_pred HHHHHHHHHHHHHHHHhheeeccCCCCCCCccC------------------CCCC--CChhhH--------------hhh
Q 011831 175 CAFILMATLSVLIAFLVLVFVVDPRKKASTFHG------------------TGEN--FDRDEL--------------VEK 220 (476)
Q Consensus 175 ~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~--~~~~~~--------------~~~ 220 (476)
+.|++..+...+..+......|+.+....+.+. +++. +..... ..+
T Consensus 165 ~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (471)
T PRK10504 165 WIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLH 244 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 999998887766666665554443322111100 0000 000000 000
Q ss_pred cCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhhhhhHH-HHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhh
Q 011831 221 GNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAM-VFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGG 298 (476)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g 298 (476)
++... +...+ .+++|+|.++..+...++....+... .+.|.|++. .|.++.++++......++.+++.++.+
T Consensus 245 ~~~~~-----~~~~~-~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 318 (471)
T PRK10504 245 ARNNN-----RALFS-LKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVV 318 (471)
T ss_pred HhcCC-----CCccC-HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 00001 13678888888777666665555555 568888886 899999999999988999999999999
Q ss_pred hhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchh
Q 011831 299 VVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRT 378 (476)
Q Consensus 299 ~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g 378 (476)
++.||+++|+. ...+..+...... .+.......+ ........++.|++.+...+ .......+..|++.++
T Consensus 319 ~l~~r~g~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g 388 (471)
T PRK10504 319 QVVNRFGYRRV-------LVATTLGLALVSL-LFMLVALLGW-YYLLPFVLFLQGMVNSTRFS-SMNTLTLKDLPDNLAS 388 (471)
T ss_pred HHHHHcCchHH-------HHHHHHHHHHHHH-HHHhcccccc-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCHHhcc
Confidence 99999998873 1112221111111 1111121222 22233445556666666666 5677888889999999
Q ss_pred hHHHHHHhhhhhhhhhhhHHHHHHHhhhh
Q 011831 379 MIYAFDRAFEGSFSSFAAPLVGILSEKMF 407 (476)
Q Consensus 379 ~~~g~~~~~~~~~~~~~~~~~g~l~~~~~ 407 (476)
.++|+.+...++|..+|+.+.|.+.+..+
T Consensus 389 ~~~~~~~~~~~~g~~ig~~i~g~ll~~~g 417 (471)
T PRK10504 389 SGNSLLSMIMQLSMSIGVTIAGLLLGLFG 417 (471)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999853
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=275.36 Aligned_cols=359 Identities=13% Similarity=0.084 Sum_probs=267.7
Q ss_pred hHHHHHHHHHHHHHHHHHhccchhhHHHHHH-hcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHH
Q 011831 13 ISLSLILINLAAIMERADENLLPSVYKEVSE-AFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWA 91 (476)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~ 91 (476)
.++.+....++.++......+++++.+.+.+ |+|+|++|.+++.+++.+++.+.+++.|++.||+|.|+++.++.++++
T Consensus 32 a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~ 111 (462)
T PRK15034 32 ARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 4578888888899999999999999999877 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh-----hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhh--
Q 011831 92 FSTAAVGAS-----QHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAG-- 164 (476)
Q Consensus 92 ~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~-- 164 (476)
+.+++.+++ +|++.+++.|++.|++ +...+.....+++|+|+++||+++|+.....++|..+++++...+..
T Consensus 112 i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~ 190 (462)
T PRK15034 112 IPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVP 190 (462)
T ss_pred HHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999987 8999999999999998 77889999999999999999999999987778888777666655441
Q ss_pred ---ccc--------CCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHH
Q 011831 165 ---HQF--------WGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESW 233 (476)
Q Consensus 165 ---~~~--------~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (476)
..+ .+..+||..+++..++.++..++.+++.++++..+ ...
T Consensus 191 l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~----------------------------~~~ 242 (462)
T PRK15034 191 VFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSR----------------------------ASI 242 (462)
T ss_pred HHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc----------------------------cCH
Confidence 100 01245899999988888877777777655543211 112
Q ss_pred HhhhhhccchhHHHHHHHHHhhhhhhhHH-HHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCc
Q 011831 234 MATKAVIKVPTFQIIVLQGIVGSLPWTAM-VFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSG 312 (476)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~ 312 (476)
++.+..+|+|..|.+.+..++.+..+..+ .++|.|+++ .++............+...+.++++|+++||+|+++..
T Consensus 243 ~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl-- 319 (462)
T PRK15034 243 ADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVT-- 319 (462)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHH--
Confidence 34455888899998888888888877766 489999876 33333333334445678889999999999999998732
Q ss_pred chhHhHHHHHhhhhHHHhhhhccccC-cchHHHHHHHHHHHHHHHHhhhcccccchhhcccCc-----------------
Q 011831 313 RVMCAQFSAFMGIPFSWFLLTAIPQS-VSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPA----------------- 374 (476)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~----------------- 374 (476)
..+...........+...+.. ......+...++...++.+.... ..+-++.+.+|+
T Consensus 320 -----~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gng-svfk~ip~~f~~~~~~~~~~~~~~~~~~~ 393 (462)
T PRK15034 320 -----LINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSG-STFQMIAVIFRQITIYRVKMKGGSDEQAQ 393 (462)
T ss_pred -----HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccch-HHHHhhHHHHhhhhhhcccccccchhHHh
Confidence 122221122211222222221 12233333333333333333333 445566666663
Q ss_pred ----cchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhhcC
Q 011831 375 ----KHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGY 409 (476)
Q Consensus 375 ----~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~ 409 (476)
++.|.+.|+....+.+|+.+-|.+.|...+.++++
T Consensus 394 ~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~ 432 (462)
T PRK15034 394 REAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSP 432 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCc
Confidence 25789999999999999999999999999998776
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=291.30 Aligned_cols=377 Identities=15% Similarity=0.199 Sum_probs=262.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHH
Q 011831 10 VLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILC 89 (476)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~ 89 (476)
++++|+.+..++++.+++.++....++.+|.+.+++|.++.+.+++.+.+.+++.++.++.|+++||+|||+++..+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 94 (496)
T PRK03893 15 NRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVL 94 (496)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 34567788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCC
Q 011831 90 WAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWG 169 (476)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~ 169 (476)
.+++.++++++++++.+++.|++.|++.+...+....++.|++|+|+|++++++...+.++|..+++.+.+.+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---- 170 (496)
T PRK03893 95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPV---- 170 (496)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHH---------HHhhhh--
Q 011831 170 VPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLES---------WMATKA-- 238 (476)
Q Consensus 170 ~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-- 238 (476)
.+||+.|++.++..++. ++.....|+++....+. ++++ ..++..+.....++...... ......
T Consensus 171 -~~w~~~f~~~~~~~~~~-~~~~~~~p~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (496)
T PRK03893 171 -WGWRALFFIGILPIIFA-LWLRKNLPEAEDWKEKH--AGKA-PVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNL 245 (496)
T ss_pred -CCHHHHHHHHHHHHHHH-HHHHHhCCCchhhhhhc--cccc-cchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 89999998755443332 22222222221111110 0000 00000000000000000000 000000
Q ss_pred -------------------------hccchhHHHHHHHHHhhhh-hhhHHHHHHHHHH-HhCCChhHHHHHHHHHHhhhh
Q 011831 239 -------------------------VIKVPTFQIIVLQGIVGSL-PWTAMVFFTMWFE-LIGFDHSSTAALLSLFAIGCA 291 (476)
Q Consensus 239 -------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~ 291 (476)
..+.+.........+.... .+....++|.|++ ++|+++.+++.+.+...++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~ 325 (496)
T PRK03893 246 QNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAA 325 (496)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Confidence 0000111111111111111 1223467899996 599999999999999999999
Q ss_pred hhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcc
Q 011831 292 VGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEV 371 (476)
Q Consensus 292 ~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 371 (476)
++.++.|++.||+++|+.. ..+..+..... +.... ..... ........+..+.......+ ...++++|.
T Consensus 326 ~g~~~~g~l~dr~g~~~~~-------~~~~~~~~~~~-~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 394 (496)
T PRK03893 326 VGCCVGGFLGDWLGTRKAY-------VCSLLISQLLI-IPVFA-IGGAN-VWVLGLLLFFQQMLGQGISG-LLPKLIGGY 394 (496)
T ss_pred HHHHHHHHHHHHhcchHHH-------HHHHHHHHHHH-HHHhh-ccccH-HHHHHHHHHHHHHHhcccch-hhHHHHHhh
Confidence 9999999999999988631 11111111111 11111 11122 22222223332222222223 456788899
Q ss_pred cCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 372 VPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 372 ~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
+|+++|++++|+.+...++++.++|.+.|.+.|..
T Consensus 395 ~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~ 429 (496)
T PRK03893 395 FDTEQRAAGLGFTYNVGALGGALAPILGALIAQRL 429 (496)
T ss_pred CCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999985
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=291.06 Aligned_cols=391 Identities=14% Similarity=0.059 Sum_probs=260.5
Q ss_pred cccccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHhc-----CCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCch
Q 011831 7 TRKVLGISLSLILINLAAIMERADENLLPSVYKEVSEAF-----NAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPA 81 (476)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~ 81 (476)
.+-.+.+++.+.++.++.+.++++....+...|.+.+++ +.+..+.+++.+.+.+++.++++++|+++||+|||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~ 87 (502)
T TIGR00887 8 APFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKR 87 (502)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence 334566777888899999999999999999999887753 334557789999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhH
Q 011831 82 VLTIGILCWAFSTAAVGASQH------FLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGG 155 (476)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g 155 (476)
++..+.++..++.++++++++ ++.++++|+++|++.|...+....+++|++|+++|++++++.+....+|.+++
T Consensus 88 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g 167 (502)
T TIGR00887 88 VYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAG 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998765 78899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccc------------------CCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCC-CCCChhh
Q 011831 156 GVLATIMAGHQF------------------WGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTG-ENFDRDE 216 (476)
Q Consensus 156 ~~~~~~l~~~~~------------------~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 216 (476)
+.++..+..... ....+||+.|.+.++++++..+..++++|+|++...+++++| ++....+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~ 247 (502)
T TIGR00887 168 AIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSA 247 (502)
T ss_pred HHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHH
Confidence 999887643100 012479999999988887777777777777776443332221 1100000
Q ss_pred Hhhh----cCCc---cchhHHHHHHhhhhhccc----hh---HHHHHHHHHh-hhhhhhHHHHHHHHHHHhCCChhHHHH
Q 011831 217 LVEK----GNTS---VSSVWLESWMATKAVIKV----PT---FQIIVLQGIV-GSLPWTAMVFFTMWFELIGFDHSSTAA 281 (476)
Q Consensus 217 ~~~~----~~~~---~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~s~~~~g~ 281 (476)
...+ +.++ .+...++....+++++++ +. ........+. ....|+...|.|.++++.|+++.+.+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~ 327 (502)
T TIGR00887 248 VLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATN 327 (502)
T ss_pred HhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccch
Confidence 0000 0000 000000001122333321 11 1111111122 222344456789999888887543221
Q ss_pred ------------HHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHH
Q 011831 282 ------------LLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTL 349 (476)
Q Consensus 282 ------------~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (476)
......++.+++.++.+++.||+|||+.. .......+.....+.......... ..... .
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l------~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~-~ 398 (502)
T TIGR00887 328 NAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQ------LMGFFILTVLFFVLGFAYNHLSTH--GFLAI-Y 398 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHH------HHHHHHHHHHHHHHHHHHHhcchh--HHHHH-H
Confidence 22334556777889999999999999732 111111111111111111011111 11111 1
Q ss_pred HHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 350 VLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 350 ~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
.......+....+..+.+..|.+|++.|+++.|+.+.+++++++++|.+.+.+.|..
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 455 (502)
T TIGR00887 399 VLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHG 455 (502)
T ss_pred HHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccc
Confidence 111111222222256778899999999999999999999999999999999998853
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=284.58 Aligned_cols=351 Identities=13% Similarity=0.105 Sum_probs=264.3
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHH
Q 011831 19 LINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVG 98 (476)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~ 98 (476)
.+....++..+......+.+|.+.++++.++.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+..+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~ 100 (417)
T PRK10489 21 AVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLA 100 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHH
Confidence 34444566666667778889999999999999999999999999999999999999999999999998888887776654
Q ss_pred h-----hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCch
Q 011831 99 A-----SQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGW 173 (476)
Q Consensus 99 ~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~w 173 (476)
. .++++.+++.|++.|++.+...++..+++.|++|+++|+++.++.....++|..+||.+++.+.+. .+|
T Consensus 101 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~-----~~~ 175 (417)
T PRK10489 101 LNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA-----GGV 175 (417)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH-----Hhh
Confidence 3 467889999999999999988899999999999999999999999999999999999999999887 799
Q ss_pred hHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHH
Q 011831 174 RCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGI 253 (476)
Q Consensus 174 r~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (476)
++.|++.++..++..++.+..+++++++. + ++ ...++..+..+..+++|.++...+..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (417)
T PRK10489 176 AWNYGLAAAGTFITLLPLLRLPALPPPPQ-P---RE-----------------HPLRSLLAGFRFLLASPVVGGIALLGG 234 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCc-c---cc-----------------cchHHHHHHHHHHHcChHHHHHHHHHH
Confidence 99999988777665555544433222110 0 00 001222334455667777665554444
Q ss_pred hhhhhhhHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhh
Q 011831 254 VGSLPWTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLL 332 (476)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (476)
..........++|.|+++ +|.++.+.+.+.+...++.+++.++.+++.||.++++. ...+..+.. ...+.+
T Consensus 235 ~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~-------l~~~~~~~~-~~~~~~ 306 (417)
T PRK10489 235 LLTMASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLL-------MLLSTLGSF-LAVGLF 306 (417)
T ss_pred HHHHHHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchH-------HHHHHHHHH-HHHHHH
Confidence 433333444678999988 89999999999999999999999999999998655442 111111111 111111
Q ss_pred hccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhhc
Q 011831 333 TAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFG 408 (476)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~ 408 (476)
...++ +....+..++.|++.+...+ ...++++|..|++.||+++|+.+...+++..++|.+.|++.|..+.
T Consensus 307 ---~~~~~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~ 377 (417)
T PRK10489 307 ---GLMPM-WILAVLCLALFGYLSAISSL-LQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTP 377 (417)
T ss_pred ---Hccch-HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhch
Confidence 11222 33344566667777766555 5678889999999999999999999999999999999999998543
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=282.74 Aligned_cols=378 Identities=12% Similarity=0.113 Sum_probs=265.9
Q ss_pred hHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHH
Q 011831 13 ISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAF 92 (476)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~ 92 (476)
++..+....+.+.....++..+....|.+.+ +|.++++.+++.+.+.++..+++++.|+++||+|||+.+..+.++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~ 103 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA 103 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence 4566667777777778888878888888876 599999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh----hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccC
Q 011831 93 STAAVGAS----QHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFW 168 (476)
Q Consensus 93 ~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~ 168 (476)
+.++.++. ++++.+.+.|++.|++.+...+.....+.|++|+++|++++++.+.+.++|..+++.+.+.....
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~--- 180 (438)
T TIGR00712 104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW--- 180 (438)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH---
Confidence 99887764 46778889999999999999998999999999999999999999999999999998887765432
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHH
Q 011831 169 GVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQII 248 (476)
Q Consensus 169 ~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (476)
..+||+.|++.++++++..++.+++.+|+++....++.++.+.+..+...++.+ .+.+.++.. .+..+|++.++..
T Consensus 181 -~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~ 256 (438)
T TIGR00712 181 -FNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAE-QELTAKEIF--MQYVLPNKLLWYI 256 (438)
T ss_pred -hhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccc-cccchHHHH--HHHHccCchHHHH
Confidence 169999999999988887766666666544322111100000000000000000 001111111 1246788888877
Q ss_pred HHHHHhhhhh-hhHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhh
Q 011831 249 VLQGIVGSLP-WTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIP 326 (476)
Q Consensus 249 ~~~~~~~~~~-~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 326 (476)
.+..++.... +...+|.|.|+++ .|+++.+++....+..+.+++++++.|++.||+++++.. ......... ..
T Consensus 257 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~----~~~~~~~~~-~~ 331 (438)
T TIGR00712 257 AIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRG----ATGVFFMTL-VT 331 (438)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc----HHHHHHHHH-HH
Confidence 6655554443 5555889999987 799999999999999999999999999999999755421 111101111 11
Q ss_pred HHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhh-hhhhHHHHHHHhh
Q 011831 327 FSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFS-SFAAPLVGILSEK 405 (476)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~-~~~~~~~g~l~~~ 405 (476)
.....+. .....+.+. .....+..|++...... .......|.+|++.||+++|+.+...++++ .++|.+.|.+.|+
T Consensus 332 ~~~~~~~-~~~~~~~~~-~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~ 408 (438)
T TIGR00712 332 IAVIVYW-MNPAGNPLV-DMICMIVIGFLIYGPVM-LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF 408 (438)
T ss_pred HHHHHHH-hcCCCchHH-HHHHHHHHHHHHccHHH-HHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHh
Confidence 1111111 111122222 22333444443322212 123456788999999999999999988876 5899999999998
Q ss_pred h
Q 011831 406 M 406 (476)
Q Consensus 406 ~ 406 (476)
.
T Consensus 409 ~ 409 (438)
T TIGR00712 409 F 409 (438)
T ss_pred c
Confidence 4
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=276.54 Aligned_cols=352 Identities=14% Similarity=0.137 Sum_probs=267.5
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHH
Q 011831 17 LILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAA 96 (476)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~ 96 (476)
...+....+....+.....+..|.+.+|+|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 86 (385)
T TIGR00710 7 ALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLG 86 (385)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHH
Confidence 33444445666677778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHH
Q 011831 97 VGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCA 176 (476)
Q Consensus 97 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~ 176 (476)
++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+. .+||+.
T Consensus 87 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-----~~~~~~ 161 (385)
T TIGR00710 87 LALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW-----LSWHAI 161 (385)
T ss_pred HHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999887 899999
Q ss_pred HHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhh
Q 011831 177 FILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGS 256 (476)
Q Consensus 177 f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (476)
|++.++..++..+..++..||++++.++. ..++..+..++.+++|.++...+......
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (385)
T TIGR00710 162 FAFLSLAGILLSALIFFILPETLPYEARI----------------------QISTYFETFLLLLKSKMFWGYALIYGASF 219 (385)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCcccC----------------------CHHHHHHHHHHHHcCchhHHHHHHHHHHH
Confidence 99998887777766666555443221110 00122234455677777776655544443
Q ss_pred hh-hhHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhc
Q 011831 257 LP-WTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTA 334 (476)
Q Consensus 257 ~~-~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (476)
.. +....+.|.++++ +|.++.+.+.+.....++.+++.++.+++.||+++|+.. . .+..............
T Consensus 220 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~------~-~~~~~~~~~~~~~~~~ 292 (385)
T TIGR00710 220 GGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLL------R-MGLILFAVSAVLLEIT 292 (385)
T ss_pred HHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH------H-HHHHHHHHHHHHHHHH
Confidence 33 3334667888875 899999999999999999999999999999999988632 1 1111111111111111
Q ss_pred cccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHh
Q 011831 335 IPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSE 404 (476)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 404 (476)
.......+........+.|++.+...+ .......|..| ++++++.++.+...+.++.+.+.+.+.+.+
T Consensus 293 ~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~ 360 (385)
T TIGR00710 293 AILGLGSWAMIIGPMMFVGIGNSMISS-IAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHG 360 (385)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 111112233344455667777776666 56677778776 679999999999988877776666664433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=278.03 Aligned_cols=353 Identities=17% Similarity=0.182 Sum_probs=276.3
Q ss_pred HHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHh
Q 011831 20 INLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGA 99 (476)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 99 (476)
+..+.++..+......+.+|.+.++++.++.+.|++.+++.++..+++++.|+++||+|||+++..+.++..++.++.++
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 83 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF 83 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence 45666777777788888999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hh-----hHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchh
Q 011831 100 SQ-----HFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWR 174 (476)
Q Consensus 100 ~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr 174 (476)
++ +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|.+++|.+++.+.+. .+||
T Consensus 84 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-----~g~~ 158 (365)
T TIGR00900 84 VALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT-----LGIK 158 (365)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----hhHH
Confidence 88 9999999999999999999999999999999999999999999999999999999999999987 8999
Q ss_pred HHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHh
Q 011831 175 CAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIV 254 (476)
Q Consensus 175 ~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (476)
+.|++.++..++..+..+...++++++ ++. ++.+ +...++..+..+..+++|.++......+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (365)
T TIGR00900 159 WAIWVDAVGFAISALLIVSVRIPELAA-SEI----QALS------------NAVLRDTREGIKFVLKNPLLRTLLLLALL 221 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCC-ccc----cccc------------hhHHHHHHhHHHHHHcCcHHHHHHHHHHH
Confidence 999998877665554444432221111 000 0000 00112233445567778887776665555
Q ss_pred hhhhh-hHH-HHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhh
Q 011831 255 GSLPW-TAM-VFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFL 331 (476)
Q Consensus 255 ~~~~~-~~~-~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (476)
....+ ... .+.|.+.++ +|.++.+.+.......++.+++.++.+++.||.++|+. ...+........ ..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~-~~ 293 (365)
T TIGR00900 222 FNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMAL-------MTGAIFVIGLAI-LV 293 (365)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHH-------HHHHHHHHHHHH-HH
Confidence 44433 344 678888887 89999999999999999999999999999999988763 111111111111 11
Q ss_pred hhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 332 LTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
.... .. + .....+..++.|++.+...+ ...++..|..|+++|+++.|+.+...++++.++|.+.|.+.|..
T Consensus 294 ~~~~-~~-~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~ 364 (365)
T TIGR00900 294 VGLT-PP-N-FPLFLVLWFAIGVGYGPINV-PQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL 364 (365)
T ss_pred HHhh-ch-h-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1111 11 1 34455667778888877776 67889999999999999999999999999999999999999874
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=272.87 Aligned_cols=352 Identities=11% Similarity=0.003 Sum_probs=259.3
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHH
Q 011831 19 LINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVG 98 (476)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~ 98 (476)
.+.+..+....+.....+.+|.+.++++.+.++.++..+++.+++.++++++|+++||+|||+++..+.+++++++++++
T Consensus 20 ~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~ 99 (413)
T PRK15403 20 ALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATL 99 (413)
T ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 34455566677888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHH
Q 011831 99 ASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFI 178 (476)
Q Consensus 99 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~ 178 (476)
+++|++.++++|+++|++.+...+....++.|++|+++|++++++......+|..+||.+++.+.++ .+||+.|+
T Consensus 100 ~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~-----~gw~~~f~ 174 (413)
T PRK15403 100 FTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF-----VHWKVLFA 174 (413)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCHHHHHH
Confidence 9999999999999999999877778888999999999999999999999999999999999999887 89999999
Q ss_pred HHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhhh
Q 011831 179 LMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLP 258 (476)
Q Consensus 179 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (476)
+.++..++..+..++..||++++.++ +. ..++..++.+..+|+|.++...+........
T Consensus 175 ~~~~~~~i~~~~~~~~lp~~~~~~~~------~~---------------~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~ 233 (413)
T PRK15403 175 IIAVMGLIAFVGLLLAMPETVKRGAV------PF---------------SAKSVLRDFRNVFRNRLFLTGAATLSLSYIP 233 (413)
T ss_pred HHHHHHHHHHHHHHHhCCCCccccCC------CC---------------ChHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 99988877766555545553321100 00 0122344566788899998876665555544
Q ss_pred h-hHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccc
Q 011831 259 W-TAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIP 336 (476)
Q Consensus 259 ~-~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (476)
+ ....+.|.++++ .|+++.+.++.......+..++..+.+++.+|..+++.. .........+..........
T Consensus 234 ~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~----~~~~~~~~ig~~l~~~~~~~-- 307 (413)
T PRK15403 234 MMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFI----WRAVPIQLVGLALLIVGNLL-- 307 (413)
T ss_pred HHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHH----HHHHHHHHHHHHHHHHHHHH--
Confidence 3 333667999987 799999999998888888888877777766444333311 00000111111111111111
Q ss_pred cCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhh
Q 011831 337 QSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEK 405 (476)
Q Consensus 337 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 405 (476)
..+. +.......++.+++.+...+ ......-+ -.+..+|++.++.+.....+..+++...|++.+.
T Consensus 308 ~~~~-~~~~~~~~~l~~~G~~~~~p-~~~~~al~-~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~ 373 (413)
T PRK15403 308 WPHV-WLWSVLGTSLYAFGIGLIFP-TLFRFTLF-SNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN 373 (413)
T ss_pred cccc-HHHHHHHHHHHHHHHHHHhH-HHHHHHhc-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1122 22233455556666666655 33322211 1223479999999999999999999999998877
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=288.49 Aligned_cols=372 Identities=14% Similarity=0.208 Sum_probs=282.9
Q ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHH
Q 011831 15 LSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFST 94 (476)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~ 94 (476)
+.+..++++.++..++....++.+|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++..++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 81 (485)
T TIGR00711 2 LLTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGS 81 (485)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 34567778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchh
Q 011831 95 AAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWR 174 (476)
Q Consensus 95 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr 174 (476)
++++++++++.+++.|+++|++.+...+...+++.|++|+++|+++++++.....+|..++|.+++++.+. .+||
T Consensus 82 ~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-----~~w~ 156 (485)
T TIGR00711 82 LLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIEN-----YHWR 156 (485)
T ss_pred HHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccC-----cCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 8999
Q ss_pred HHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhh--------------HhhhcCC--ccc-hh---------
Q 011831 175 CAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDE--------------LVEKGNT--SVS-SV--------- 228 (476)
Q Consensus 175 ~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~--~~~-~~--------- 228 (476)
+.|++.++++++..++.++..|++++...++ .+... ..+.++. ... ..
T Consensus 157 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (485)
T TIGR00711 157 WIFLINVPIGIIVVVVAFFILPRDKPAASEN------FDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLV 230 (485)
T ss_pred ehhhhhhHHHHHHHHHHHHHcCCccccccCC------CcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHH
Confidence 9999998888777766666555543221111 00000 0000000 000 00
Q ss_pred ------HHHHH----HhhhhhccchhHHHHHHHHHhhhhh-hhHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhch
Q 011831 229 ------WLESW----MATKAVIKVPTFQIIVLQGIVGSLP-WTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFL 296 (476)
Q Consensus 229 ------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~ 296 (476)
.++.. ....+++++|.++...+..+..... +....++|.|+++ +|+++.+++....+..++.+++.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~ 310 (485)
T TIGR00711 231 AIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPI 310 (485)
T ss_pred HHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0012356777777665555554443 4445788999987 8999999999999999999999999
Q ss_pred hhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccc
Q 011831 297 GGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKH 376 (476)
Q Consensus 297 ~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~ 376 (476)
.|++.||+++|+. ...+..+................+ ........++.|++.+...+ .......+..|+++
T Consensus 311 ~g~l~~r~~~~~~-------~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~g~~~~~~-~~~~~~~~~~~~~~ 381 (485)
T TIGR00711 311 AGRMGDKIDPRKL-------VTIGLILYAVGFYWRAFTFTPDTP-FLAIALPQFIRGFGMGCFFM-PLTTIALSGLPPHK 381 (485)
T ss_pred HHHHHhhcCcHHH-------HHHHHHHHHHHHHHHhccCCCCCC-HHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCHHH
Confidence 9999999998862 122222211111111111122222 23344556777888777665 34566667789999
Q ss_pred hhhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 377 RTMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 377 ~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
+++++|+.+..+++|+.+|+.+.|.+.++.
T Consensus 382 ~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 382 IARGSSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998863
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=291.39 Aligned_cols=378 Identities=15% Similarity=0.085 Sum_probs=255.3
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHhcCCC--------CCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHH
Q 011831 17 LILINLAAIMERADENLLPSVYKEVSEAFNAG--------PSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGIL 88 (476)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s--------~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~ 88 (476)
..++.++.++..++....++..+.+.++++.+ ..+.+++.+.+.++..++++++|+++||+|||+++..+.+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~ 109 (481)
T TIGR00879 30 SLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIAL 109 (481)
T ss_pred HHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHH
Confidence 33444555667778888888999999988877 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh---hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHH---HHH
Q 011831 89 CWAFSTAAVGAS---QHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLA---TIM 162 (476)
Q Consensus 89 ~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~---~~l 162 (476)
++.++.+++.+. .+++.+++.|+++|++.+...+...++++|++|+++|++++++.+.+.++|..+++.++ ...
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 189 (481)
T TIGR00879 110 LFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSL 189 (481)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999998654 34568999999999999999999999999999999999999999999999999999999 554
Q ss_pred hhcccCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccch---------------
Q 011831 163 AGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSS--------------- 227 (476)
Q Consensus 163 ~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 227 (476)
.+. .+||+.|++.++..++..+..++.+++|+....++++++.+...++....+......
T Consensus 190 ~~~-----~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (481)
T TIGR00879 190 NNT-----LGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEK 264 (481)
T ss_pred CCC-----ccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 444 799999999777666555555454443322111110000000000000000000000
Q ss_pred -hHHHHHHhhhhhc---cchhHHHHHHHHHhhhhhhhH-HHHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhh
Q 011831 228 -VWLESWMATKAVI---KVPTFQIIVLQGIVGSLPWTA-MVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVAD 302 (476)
Q Consensus 228 -~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d 302 (476)
..+..+....... +.+.++...+..+........ ..+.|.++++.|++..+++.......++.+++.++.+++.|
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 344 (481)
T TIGR00879 265 RSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVD 344 (481)
T ss_pred hhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000011111111 123333333333333333333 35678888889999988888988999999999999999999
Q ss_pred hhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcc-----hHHHHHHHHHHHHHHHHhhhcccccchhhcccCccch
Q 011831 303 RISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVS-----NYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHR 377 (476)
Q Consensus 303 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~ 377 (476)
|++||+.. .............+.......... ... ......+.+.+.+....+....++.|.+|+++|
T Consensus 345 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 417 (481)
T TIGR00879 345 RFGRRPLL------LIGAAGMAICLFVLGILGASFVTGSSKSSGNV-AIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLR 417 (481)
T ss_pred HhcchHHH------HHHHHHHHHHHHHHHHHhhcccCCcccchhHH-HHHHHHHHHHHHHccccCeehhhhhccCChHHH
Confidence 99998732 111111111111111111111110 122 222223333333333333567788999999999
Q ss_pred hhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 378 TMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 378 g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
+++.|+.+...++++.++|.+.+.+.++.
T Consensus 418 ~~~~~~~~~~~~lg~~i~~~~~~~~~~~~ 446 (481)
T TIGR00879 418 PKGISIAVAANWLANFIVGFLFPTMLESI 446 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999874
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=277.10 Aligned_cols=346 Identities=18% Similarity=0.157 Sum_probs=250.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHhccchhhHHH-HHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHH
Q 011831 10 VLGISLSLILINLAAIMERADENLLPSVYKE-VSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGIL 88 (476)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~ 88 (476)
..+.++.+..+.+..++..++..+..+.+|. +.+++|.|+.+.|++.+++.+++.+++++.|+++||+|||+++..+.+
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~ 89 (399)
T PRK05122 10 GLRLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLC 89 (399)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHH
Confidence 4455566677888888888888888888886 678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh--------hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHH
Q 011831 89 CWAFSTAAVGAS--------QHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLAT 160 (476)
Q Consensus 89 ~~~~~~~~~~~~--------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~ 160 (476)
+.+++.+++.++ .+++.+++.|+++|++.+...+...+++.|++|+|+|++++++.+.+..+|.++|+.+++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~ 169 (399)
T PRK05122 90 GCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGV 169 (399)
T ss_pred HHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHH
Confidence 998887766553 256788999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhc
Q 011831 161 IMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVI 240 (476)
Q Consensus 161 ~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (476)
.+.+. .+||+.+++..+..++..+... +.|+... ++ ++ +.+.++ ..+..
T Consensus 170 ~l~~~-----~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~---~~---------------~~~~~~---~~~~~- 218 (399)
T PRK05122 170 LLYHW-----GGLAGLGLLIMLLALLGLLLAR---PRPAVPP-VK---GE---------------RLPFRR---VLGRV- 218 (399)
T ss_pred HHHHc-----ccHHHHHHHHHHHHHHHHHHHh---cCCCCCC-CC---cc---------------chhHHH---HHHHH-
Confidence 99887 8999999887766544333222 1111110 00 00 000111 11111
Q ss_pred cchhHHHHHHHHHhhhhhh-hHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHH
Q 011831 241 KVPTFQIIVLQGIVGSLPW-TAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQF 319 (476)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 319 (476)
+............+ ....++|.|+++.|++ +.+...+...++.++++++.|++.||+++|+.. ..
T Consensus 219 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~-------~~ 284 (399)
T PRK05122 219 -----WPYGMGLALASIGFGTIATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVA-------IV 284 (399)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHH-------HH
Confidence 11111111112222 2336788888777663 456666778888999999999999999987631 11
Q ss_pred HHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHH
Q 011831 320 SAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLV 399 (476)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~ 399 (476)
+..+..... .... . .++. ....+..++.|++.+...+ .......|..|+++||++.|+.+...+++..++|.+.
T Consensus 285 ~~~~~~~~~-~~~~-~--~~~~-~~~~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 358 (399)
T PRK05122 285 SLLVEILGL-LLLW-L--APSP-WMALIGAALTGFGFSLVFP-ALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLA 358 (399)
T ss_pred HHHHHHHHH-HHHH-H--hccH-HHHHHHHHHHHHhHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 1111 1 1222 2344556778887776666 4556677889999999999999999999999999999
Q ss_pred HHHHhhh
Q 011831 400 GILSEKM 406 (476)
Q Consensus 400 g~l~~~~ 406 (476)
|.+.|..
T Consensus 359 g~l~~~~ 365 (399)
T PRK05122 359 GLVASWF 365 (399)
T ss_pred HHHHHHc
Confidence 9999874
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=272.00 Aligned_cols=360 Identities=14% Similarity=0.141 Sum_probs=254.4
Q ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHH
Q 011831 15 LSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFST 94 (476)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~ 94 (476)
+.+....++.+............++.+.+|+|.++++.|++.+.+.+++.+++++.|++.||+|||+++..+.++.++++
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~ 92 (402)
T TIGR00897 13 LNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGH 92 (402)
T ss_pred chhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 33444555555555555555556677778999999999999999999999999999999999999999999999999987
Q ss_pred HHHH---h-hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhh-hhHHHHHHHHhhcccCC
Q 011831 95 AAVG---A-SQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGG-IGGGVLATIMAGHQFWG 169 (476)
Q Consensus 95 ~~~~---~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~-~~g~~~~~~l~~~~~~~ 169 (476)
+++. + .++++.+++.|++.|++.+...+...+.+.+++|+|+|++++|+.+.+.++|. +++|++++.+.+.
T Consensus 93 ~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~---- 168 (402)
T TIGR00897 93 AAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA---- 168 (402)
T ss_pred HHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----
Confidence 7653 3 35788889999999999988888888999999999999999999999999997 6899999988876
Q ss_pred CCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHH
Q 011831 170 VPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIV 249 (476)
Q Consensus 170 ~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (476)
.||+..++......++..++.+++.++++++.+++ +++ +.++..+..+.++++|.++...
T Consensus 169 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----------------~~~~~~~~~~~~~~~~~~~~~~ 228 (402)
T TIGR00897 169 -FGEMNTLWSALAFVLTGGVIALFSNKDIFTPQHMQ--TRE-----------------KFSELGKAATILFTNPNVLLGG 228 (402)
T ss_pred -cchHHHHHHHHHHHHHHHHHHHhccCCCCCccccc--CCc-----------------chhhHHHHHHHHHcChhHHHHH
Confidence 78665555444333333334444444432211100 000 0112223345677888887766
Q ss_pred HHHHhhhh-hhhHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHH
Q 011831 250 LQGIVGSL-PWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFS 328 (476)
Q Consensus 250 ~~~~~~~~-~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (476)
+..++... .+...++.|.|++++|+++.+.+.......+++.++++..|+++||+++|+.. .............
T Consensus 229 ~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~-----~~~~~l~~~~~~~ 303 (402)
T TIGR00897 229 MVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTV-----RWFGGVGCGIFTL 303 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH-----HHHHHHHHHHHHH
Confidence 55554444 34555889999988999999999998899999999999999999999988632 1110011111111
Q ss_pred HhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhh
Q 011831 329 WFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMF 407 (476)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~ 407 (476)
.+........++ ........++.|++.+...+ ......|..| ++||++.|+.+...++++.++|.+.|.+.|..+
T Consensus 304 ~l~~~~~~~~~~-~~~~~~~~~~~G~~~~~~~~--~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g 378 (402)
T TIGR00897 304 ALYYIPQHFGHS-FAVALIIAIALGIFLAGYVP--LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG 378 (402)
T ss_pred HHHHHHHccCCc-HHHHHHHHHHHHHHHHHHHH--HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 111111111122 23334556666776665444 2455667544 789999999999999999999999999999853
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=280.22 Aligned_cols=347 Identities=23% Similarity=0.327 Sum_probs=262.5
Q ss_pred HHHHHHHHHHhccchhhHH-HHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHh
Q 011831 21 NLAAIMERADENLLPSVYK-EVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGA 99 (476)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 99 (476)
+++.++...+.....+.+| .+.+++|.++++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++..+
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 81 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF 81 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh
Confidence 5667778888888899999 899999999999999999999999999999999999999999999999999999777777
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHH
Q 011831 100 SQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFIL 179 (476)
Q Consensus 100 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i 179 (476)
+++++.+++.|++.|++.+...+...+++.|++|+|+|++++++.+...++|.+++|.+++.+.+. .+||+.|++
T Consensus 82 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-----~~~~~~~~~ 156 (352)
T PF07690_consen 82 ASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISY-----FGWRWAFLI 156 (352)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-----CHHCCHHHH
T ss_pred hhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhc-----ccccccccc
Confidence 788889999999999999999999999999999999999999999999999999999999999976 899999999
Q ss_pred HHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhh-h
Q 011831 180 MATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSL-P 258 (476)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 258 (476)
.+++.++..++...+.++++++..+.++++++ + ...++..+..+..+++|.+|......+.... .
T Consensus 157 ~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (352)
T PF07690_consen 157 SAILSLIAAILFILFLPEPPPPRERESPKESE---S-----------KKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVF 222 (352)
T ss_dssp HHHHHHHHHHHHHCCC---STTTT--SSTTTT----------------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHhhhhhhcccccccccccccc---c-----------ccccccccccccccccchhhhhhhhhhHHHHHH
Confidence 99998888775445444443333222121111 0 0000111124445555655533343334333 3
Q ss_pred hhHHHHHHHHHH-HhCCC-hhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccc
Q 011831 259 WTAMVFFTMWFE-LIGFD-HSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIP 336 (476)
Q Consensus 259 ~~~~~~~~~~~~-~~g~s-~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (476)
.....+.|.|++ ++|++ ..+.+.......+.++++.++.+++.||+++|+.. ...... .....+.+....
T Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~----~~~~~~~~~~~~ 294 (352)
T PF07690_consen 223 SGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRL----LIAILL----LILGALGLLLLP 294 (352)
T ss_dssp HHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH----HHHHHH----HHHHHHHHCCSH
T ss_pred HHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH----HHHHHH----HHHHHHHHHHHH
Confidence 344478899855 49999 89999999999999999999999999999886531 111111 111111222222
Q ss_pred cCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhh
Q 011831 337 QSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAA 396 (476)
Q Consensus 337 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~ 396 (476)
..++ ........++.|++.+...+ ...++..|..|++++|++.|+.+...++++.++|
T Consensus 295 ~~~~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 295 FSSS-PVWLIIALFLIGFGFGIVFP-ILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHCH-HHHHHHHHHHHHHHHHHHCH-HHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhh-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 2222 23344566678888777777 7889999999999999999999999999999887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=281.73 Aligned_cols=375 Identities=17% Similarity=0.170 Sum_probs=273.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHH
Q 011831 10 VLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILC 89 (476)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~ 89 (476)
++++++.+....+..+..+++....++..|.+.+++|.++.+.+++.+.+.++..++.++.|+++||+|||+++..+.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 91 (398)
T TIGR00895 12 SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL 91 (398)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 44566677777778888888888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCC
Q 011831 90 WAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWG 169 (476)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~ 169 (476)
..++.++..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---- 167 (398)
T TIGR00895 92 FSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV---- 167 (398)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHh----------hhcCCccchhHHHHHHhhhhh
Q 011831 170 VPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELV----------EKGNTSVSSVWLESWMATKAV 239 (476)
Q Consensus 170 ~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 239 (476)
.+||+.|++.++..++..++.+...|+++....++++++.+...++.. .++....+...++..+..++.
T Consensus 168 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (398)
T TIGR00895 168 -FGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQG 246 (398)
T ss_pred -ccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcc
Confidence 899999999877666666666555555432211111100000000000 000000001111111211111
Q ss_pred ccchhHHHHHHHHHhhhh-hhhHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhH
Q 011831 240 IKVPTFQIIVLQGIVGSL-PWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQ 318 (476)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~ 318 (476)
.+.+..+......++... .+....+.|.+.++.|+++.+.+.......++.+++.++.+++.||+++|+. ..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~ 319 (398)
T TIGR00895 247 KTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVT-------AL 319 (398)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHH-------HH
Confidence 112222333223223323 3334467887777799999999999999999999999999999999998731 11
Q ss_pred HHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHH
Q 011831 319 FSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPL 398 (476)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~ 398 (476)
.....+.... +... . ..+ ........++.|++.+...+ ...+++.|.+|+++|+++.|+.+.+.+++..++|.+
T Consensus 320 ~~~~~~~~~~-~~~~--~-~~~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~ 393 (398)
T TIGR00895 320 LLLLGAVFAV-LVGS--T-LFS-PTLLLLLGAIAGFFVNGGQS-GLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPIL 393 (398)
T ss_pred HHHHHHHHHH-HHHH--H-hhC-HHHHHHHHHHHHHHHHHHHH-HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111111111 1111 1 112 22344566677887777777 678999999999999999999999999999999999
Q ss_pred HHHH
Q 011831 399 VGIL 402 (476)
Q Consensus 399 ~g~l 402 (476)
.|++
T Consensus 394 ~G~l 397 (398)
T TIGR00895 394 AGYL 397 (398)
T ss_pred HHhc
Confidence 9876
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=270.36 Aligned_cols=346 Identities=18% Similarity=0.158 Sum_probs=244.0
Q ss_pred cchHHHHHHHHHHHHHHHHHhccchhhHHH-HHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHH
Q 011831 11 LGISLSLILINLAAIMERADENLLPSVYKE-VSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILC 89 (476)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~ 89 (476)
.+....+..+.++.++.........+.+|. +.+|+|.|.+++|++.+.+.+++.++++++|+++||+||||++..+.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~ 90 (392)
T PRK12382 11 SSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLA 90 (392)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHH
Confidence 333444555666677777777788888885 6789999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHh--------hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHH
Q 011831 90 WAFSTAAVGA--------SQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATI 161 (476)
Q Consensus 90 ~~~~~~~~~~--------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~ 161 (476)
..++.+.... .++++.+++.|+++|++.+...+...+++.|++|+|+|++++++.+.+.++|..++|++++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~ 170 (392)
T PRK12382 91 CGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLL 170 (392)
T ss_pred HHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 7776543321 36889999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhcc
Q 011831 162 MAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIK 241 (476)
Q Consensus 162 l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (476)
+.+. .|||+.+.+..+..++..... .+.++.+. ++ ++ +.+.++. .+..++
T Consensus 171 l~~~-----~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~---~~---------------~~~~~~~---~~~~~~ 220 (392)
T PRK12382 171 LHSH-----FGFAALALTTMVLPLLAWAFN---GTVRKVPA-HA---GE---------------RPSLWSV---VGLIWK 220 (392)
T ss_pred HHhc-----cChHHHHHHHHHHHHHHHHHH---HhccCCCC-Cc---cc---------------CchHHHH---HHHHHH
Confidence 9887 899998776655443332221 11111100 00 00 0001111 111111
Q ss_pred chhHHHHHHHHHhhhhhhhHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHH
Q 011831 242 VPTFQIIVLQGIVGSLPWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSA 321 (476)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 321 (476)
+.... ............+.|.|+++.|++. .+.......++.++++++.|++.||+++|+... .+.
T Consensus 221 -~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~-------~~~ 286 (392)
T PRK12382 221 -PGLGL----ALQGVGFAVIGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAI-------VSL 286 (392)
T ss_pred -hHHHH----HHHHHHHhHHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehH-------HHH
Confidence 11111 1111112233367788888877653 456666778888899999999999999887421 111
Q ss_pred HhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHH
Q 011831 322 FMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGI 401 (476)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~ 401 (476)
.+..... .... . .++ ........++.|++.+...+ ...+...|..|+++||++.|+.+...+++..++|.+.|.
T Consensus 287 ~~~~~~~-~~~~-~--~~~-~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~ 360 (392)
T PRK12382 287 LVETVGL-LLLW-L--APT-AWVALAGAALTGAGCSLIFP-ALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGM 360 (392)
T ss_pred HHHHHHH-HHHH-H--ccc-HHHHHHHHHHHHHHHHhHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 1111 1 122 23334556667777776665 556777888999999999999999999999999999999
Q ss_pred HHhhh
Q 011831 402 LSEKM 406 (476)
Q Consensus 402 l~~~~ 406 (476)
+.|+.
T Consensus 361 l~~~~ 365 (392)
T PRK12382 361 LATSF 365 (392)
T ss_pred HHHHh
Confidence 99984
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=270.06 Aligned_cols=347 Identities=13% Similarity=0.119 Sum_probs=261.2
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHH
Q 011831 19 LINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVG 98 (476)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~ 98 (476)
...+...+..+....+.|.+|.+.+++|.++++.+++.+++.++..++++++|+++||+|||+++..+.++..++.++++
T Consensus 10 ~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 89 (401)
T PRK11043 10 YLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGML 89 (401)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHH
Confidence 33333455556667788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHH
Q 011831 99 ASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFI 178 (476)
Q Consensus 99 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~ 178 (476)
++++++.+++.|+++|++.+...+...+++.|++|++++++..+.......+|..++|.+++.+.+. .+||+.|+
T Consensus 90 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-----~g~~~~~~ 164 (401)
T PRK11043 90 WVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH-----FGWQAIFA 164 (401)
T ss_pred HhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CChHHHHH
Confidence 9999999999999999999888888889999999999999999999999999999999999999987 89999999
Q ss_pred HHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhh-
Q 011831 179 LMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSL- 257 (476)
Q Consensus 179 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 257 (476)
+.++..++..++.++.+|++++++ + ++...+.++.+++|.++...+.......
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (401)
T PRK11043 165 TLFAITLLLILPTLRLKPSKKARK-Q-------------------------SQDALTFKQLLKSKTYLGNVLIFAACSAA 218 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCCCccc-c-------------------------chHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 998888777666655544432110 0 0011234455666666554433333322
Q ss_pred hhhHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhcccc
Q 011831 258 PWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQ 337 (476)
Q Consensus 258 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (476)
.+...++.|.++++.|+++.+.+.......++.+++.++.+++.||+++|+... .......++... ........
T Consensus 219 ~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~ 292 (401)
T PRK11043 219 FFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLP----WLLVLFAVSVIA--IWLASLLS 292 (401)
T ss_pred HHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH----HHHHHHHHHHHH--HHHHHHhc
Confidence 334446789888889999999999888888899999999999999998876321 111111111111 11111111
Q ss_pred CcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhh
Q 011831 338 SVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEK 405 (476)
Q Consensus 338 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 405 (476)
.+. .........+.|++.+...+ .......|..| +++|++.|+.+.....++..++.+.|.+.|.
T Consensus 293 ~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 293 HPS-LVPLLIPFCVMAAANGAIYP-IVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred cCc-HHHHHHHHHHHHHHHHHHHH-HHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 222 23333445566776666666 55556666666 6899999999999998999999999998874
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=270.40 Aligned_cols=362 Identities=15% Similarity=0.152 Sum_probs=262.7
Q ss_pred ccCCcccccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCc-----hhHHHHHHHHHHHhhhhhhhHhhhhc
Q 011831 3 TFHRTRKVLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSD-----LGYLTFIRNFVQGLSSPLAGVLVINY 77 (476)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-----~g~~~s~~~l~~~~~~~~~G~l~dr~ 77 (476)
++.+..++.+..+....++++.++.........+.+|.+.+++|.+..+ .|++.+.+.++..+++++.|+++||+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~ 81 (408)
T PRK09874 2 SPCENDTPINWKRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK 81 (408)
T ss_pred CCCcCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3333333333344556667778888888888899999999999998765 38899999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHH
Q 011831 78 DRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGV 157 (476)
Q Consensus 78 Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~ 157 (476)
|||+++..+.++.+++.++++++++++.+++.|++.|++.+ ..+....++.|++|+++|++++++......+|..++|.
T Consensus 82 g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (408)
T PRK09874 82 GRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPL 160 (408)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999855 56778889999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhh
Q 011831 158 LATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATK 237 (476)
Q Consensus 158 ~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (476)
+++.+.+. .+||+.|++.+++.++..+..+++.+++++..+++ + +.+.+ +..
T Consensus 161 ~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---------------~~~~~----~~~ 212 (408)
T PRK09874 161 AGGLLADS-----YGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKK----E---------------MLHMR----EVV 212 (408)
T ss_pred HHHHHHHH-----hCHHHHHHHHHHHHHHHHHHHHHHhccCcccccch----h---------------hhHHH----HHH
Confidence 99999887 89999999999887777766666666543211110 0 00001 112
Q ss_pred hhccchhHHH-HHHHHHhhhhhhh-HHHHHHHHHHHhCCChh----HHHHHHHHHHhhhhhhhchhhhhhhhhccccCCC
Q 011831 238 AVIKVPTFQI-IVLQGIVGSLPWT-AMVFFTMWFELIGFDHS----STAALLSLFAIGCAVGSFLGGVVADRISQAYPHS 311 (476)
Q Consensus 238 ~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~----~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~ 311 (476)
+.++++.++. .....+....... ...++|.|.++.+.+.. ..+.+....+++.+++.+..|++.||+++|+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~- 291 (408)
T PRK09874 213 TSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKIL- 291 (408)
T ss_pred HhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhH-
Confidence 2345555443 2222222222222 23567778776433322 245566667788889999999999999988732
Q ss_pred cchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhh
Q 011831 312 GRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSF 391 (476)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~ 391 (476)
..+........ +. .. ..++ .+...+..++.|++.+...+ ...+...+..|++++|+.+++.+...+++
T Consensus 292 ------~~~~~~~~~~~-~~-~~--~~~~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~g 359 (408)
T PRK09874 292 ------ITALIFSVLLL-IP-MS--FVQT-PLQLGILRFLLGAADGALLP-AVQTLLVYNSSNQIAGRIFSYNQSFRDIG 359 (408)
T ss_pred ------HHHHHHHHHHH-HH-HH--Hhcc-HHHHHHHHHHHHhhhHhhHH-HHHHHHHHhCCcccceeeehHHHHHHHHH
Confidence 11111111111 11 11 1122 23344556667877777666 56777788889899999999999999999
Q ss_pred hhhhhHHHHHHHhhh
Q 011831 392 SSFAAPLVGILSEKM 406 (476)
Q Consensus 392 ~~~~~~~~g~l~~~~ 406 (476)
..++|.+.|.+.+..
T Consensus 360 ~~~gp~~~G~l~~~~ 374 (408)
T PRK09874 360 NVTGPLMGAAISANY 374 (408)
T ss_pred HHhhHHHHHHHHhhc
Confidence 999999999999874
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=269.04 Aligned_cols=343 Identities=15% Similarity=0.113 Sum_probs=251.2
Q ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHH
Q 011831 15 LSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFST 94 (476)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~ 94 (476)
+.+..+..+.++.........+.+|.+.+|+|.|..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~ 85 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGC 85 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchh
Q 011831 95 AAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWR 174 (476)
Q Consensus 95 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr 174 (476)
.++++++|++.+++.|+++|++.+...+...+.+.+..++++|++++++++.+.++|..+||.+++.+.+. ..|+
T Consensus 86 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-----~~~~ 160 (381)
T PRK03633 86 AGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE-----LMSV 160 (381)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----ccch
Confidence 99999999999999999999999999999888889999999999999999999999999999999998764 2233
Q ss_pred HHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHh
Q 011831 175 CAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIV 254 (476)
Q Consensus 175 ~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (476)
..+. .+........+.+...+++ .. ++ ++ . ++.++.+++|.++......+.
T Consensus 161 ~~~~-~~~~~~~~~~~~~~~~~~~--~~-~~---~~---------------~-------~~~~~~~~~~~~~~~~~~~~~ 211 (381)
T PRK03633 161 LPWV-TGLVLAAILPLLFTRILNQ--QA-EN---HD---------------S-------TSIWPMLKLRQARLGVNGCII 211 (381)
T ss_pred HHHH-HHHHHHHHHHHHHhcccCC--CC-CC---CC---------------C-------CCHHHHHHhcchHHHHHHHHH
Confidence 3322 2222211111111111111 00 00 00 0 011123445555544332333
Q ss_pred hhhhhh-HHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhh
Q 011831 255 GSLPWT-AMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLT 333 (476)
Q Consensus 255 ~~~~~~-~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (476)
....+. ..+++|.|+++.|.++.+.+...+...++.+++++..|++.||+++|+.. ..+........ ....
T Consensus 212 ~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l-------~~~~~~~~~~~-~~~~ 283 (381)
T PRK03633 212 SGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVL-------RVQVFVVILGS-IAML 283 (381)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHH-------HHHHHHHHHHH-HHHh
Confidence 322333 33678999988999999999999999999999999999999999988631 11111111111 1111
Q ss_pred ccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhh
Q 011831 334 AIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMF 407 (476)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~ 407 (476)
... . ......+.|.+.....+ ...+.+.|..|+++++...+..+...++|+.++|.+.|++.|+.+
T Consensus 284 ----~~~--~-~~~~~~l~g~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g 349 (381)
T PRK03633 284 ----SQA--A-MAPALFILGAAGFTLYP-VAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS 349 (381)
T ss_pred ----hhH--H-HHHHHHHHHHHHHhHHH-HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 111 1 12233445554444445 567778888888888888888888889999999999999999853
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=265.55 Aligned_cols=343 Identities=13% Similarity=0.072 Sum_probs=249.7
Q ss_pred HHHHHHHHHhccchhhHH-HHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhh
Q 011831 22 LAAIMERADENLLPSVYK-EVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGAS 100 (476)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 100 (476)
...++.........+.++ .+.+++|+|..++|++.+...+...+.+++.|+++||+|||+++..+.++.+++.+++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~ 96 (400)
T PRK11646 17 IDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA 96 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444455544 5678999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHH
Q 011831 101 QHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILM 180 (476)
Q Consensus 101 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~ 180 (476)
++++.+++.|+++|++.+...|...+++.|++|+|+|++++++.+...++|..+||.+++.+. . .+||+.|++.
T Consensus 97 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~-----~g~~~~f~~~ 170 (400)
T PRK11646 97 HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-Q-----YDFRLVCATG 170 (400)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-----hhHHHHHHHH
Confidence 999999999999999999899999999999999999999999999999999999999999998 4 6999999998
Q ss_pred HHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhhh-h
Q 011831 181 ATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLP-W 259 (476)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 259 (476)
++..++..++..+..|+++..+ .. ++..++.++.+++|.++...+..+..... .
T Consensus 171 ~~~~~~~~i~~~~~~~~~~~~~-~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (400)
T PRK11646 171 AVLFVLAAAFNAWLLPAYKLST-VR------------------------TPVREGMTRVLRDKRFVTYVLTLTGYYMLAV 225 (400)
T ss_pred HHHHHHHHHHHHHhCCcccccc-cc------------------------hhhHHHHHHHHcCchHHHHHHHHHHHHHHHH
Confidence 8877766555444444321100 00 01112344566677766544433322222 2
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhh-hccccCCCcchhHhHHHHHhhhhHHHhhhhccccC
Q 011831 260 TAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADR-ISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQS 338 (476)
Q Consensus 260 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (476)
....++|.|+++.+.++.+.+.+.+...+....+....+++.|| .+.++. . ..+..+.. .....+ ...
T Consensus 226 ~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~------~-~~~~~~~~-~~~~~l---~~~ 294 (400)
T PRK11646 226 QVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHR------L-MAGLLIMS-LSMFPI---GMV 294 (400)
T ss_pred HHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH------H-HHHHHHHH-HHHHHH---HHh
Confidence 23357899998866677888888888777666655555666554 443321 1 11111111 111111 111
Q ss_pred cchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhhc
Q 011831 339 VSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFG 408 (476)
Q Consensus 339 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~ 408 (476)
++. ....+...+.+.+.+...+ ...+++.|..|+++||+++|+.+...+++..+||.+.|++.|+.++
T Consensus 295 ~~~-~~~~~~~~l~~~g~~~~~p-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~ 362 (400)
T PRK11646 295 SNL-QQLFTLICLFYIGSIIAEP-ARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKA 362 (400)
T ss_pred hhH-HHHHHHHHHHHHHHHHHHc-cHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhh
Confidence 222 2233344556666665555 6678899999999999999999999999999999999999998643
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=267.05 Aligned_cols=354 Identities=13% Similarity=0.133 Sum_probs=266.6
Q ss_pred chHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHH
Q 011831 12 GISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWA 91 (476)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~ 91 (476)
+.++.+....+...+..+......+.+|.+.+++|.|+.+.+++.+.+.+++.+++++.|+++||+|||+++..+..+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~ 84 (394)
T PRK11652 5 RNVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFI 84 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHH
Confidence 34555555666666667777788888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCC
Q 011831 92 FSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVP 171 (476)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~ 171 (476)
++.+++.++++++.+++.|++.|++.+...+....+..|.+++++|+++.++.+.+..+|..++|.+++.+.+. .
T Consensus 85 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-----~ 159 (394)
T PRK11652 85 LGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL-----F 159 (394)
T ss_pred HHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----c
Confidence 99999999999999999999999999988888889999999999999999999999999999999999999886 7
Q ss_pred chhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHH
Q 011831 172 GWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQ 251 (476)
Q Consensus 172 ~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (476)
+||+.|++.++..++..++..+..||+++..+++ ++..+..+..+++|.++.....
T Consensus 160 g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~ 215 (394)
T PRK11652 160 GWRACYLFLLLLGAGVTFSMARWMPETRPADARR------------------------TRVLASYRTLLSNRRFNCYLLM 215 (394)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhCCccCccccch------------------------hHHHHHHHHHHcChHHHHHHHH
Confidence 9999999988877766655555545432211100 1123344556677776655544
Q ss_pred HHhhhhhhhHH-HHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHH
Q 011831 252 GIVGSLPWTAM-VFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSW 329 (476)
Q Consensus 252 ~~~~~~~~~~~-~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (476)
.+......... .+.+.++++ +|+++.+.+.......++.+++..+.+++.||.+++. ..............
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~- 288 (394)
T PRK11652 216 LIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM------WQSVICCLLAGLLM- 288 (394)
T ss_pred HHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH-
Confidence 43333333333 456778877 8999999999888888888889999999999887332 11111111111111
Q ss_pred hhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhh
Q 011831 330 FLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEK 405 (476)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 405 (476)
.........+ .........+.+++.+...+ ...+...|..| +++|++.++.+...++++.+++.+.+.+.+.
T Consensus 289 -~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 289 -WIPGWFGVMN-VWTLLVPAALFFFGAGMLFP-LATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred -HHHHHhcccc-HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 1111111112 23344555667777776666 66777888887 6889999999999999999999998887654
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=262.93 Aligned_cols=345 Identities=14% Similarity=0.074 Sum_probs=251.8
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHH
Q 011831 19 LINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVG 98 (476)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~ 98 (476)
.++++.++..++........+.+.+|++.++.+.+++.+.+.+++.+..+++|+++||+|||++++.+.++.++++++++
T Consensus 7 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~ 86 (393)
T PRK11195 7 AIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLML 86 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHH
Confidence 45566777776555566666777899999999999999999999999999999999999999999999999999998888
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHH
Q 011831 99 ASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFI 178 (476)
Q Consensus 99 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~ 178 (476)
++.+. ++.|+++|++.+...|+..+++.|++|+|+|++++++.+....+|.++||.+++.+.++ .|+..+.
T Consensus 87 ~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~------~~~~~~~ 157 (393)
T PRK11195 87 FGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP------HAEAALA 157 (393)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 87664 77899999999999999999999999999999999999999999999999999999985 4888888
Q ss_pred HHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhhh
Q 011831 179 LMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLP 258 (476)
Q Consensus 179 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (476)
+.+...++..+. .+..||++.+.++. + .+.. ...++.++..+.++++|.+........+.+..
T Consensus 158 i~~~~~~~~~~~-~~~l~~~~~~~~~~-~----~~~~-----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (393)
T PRK11195 158 VCALIYLLAALF-NLFIPRLGARRPGQ-S----WNPI-----------ALLRDFFHACRVLWRDKLGRFSLAGTTLFWGA 220 (393)
T ss_pred HHHHHHHHHHHH-HhcCCCCccccccc-C----CCHH-----------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 777655444333 34444433211110 0 0000 01122233345566777666544433333332
Q ss_pred -hhHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccc
Q 011831 259 -WTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIP 336 (476)
Q Consensus 259 -~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (476)
.......|.|+++ +|.++.+.|...+..+++.+++++..+++.||.++++.. ..+...+... .. ..
T Consensus 221 ~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~-------~~g~~~~~~~--~~---~~ 288 (393)
T PRK11195 221 GATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVL-------PAGILMGLVV--LL---MA 288 (393)
T ss_pred HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchH-------HHHHHHHHHH--HH---HH
Confidence 2233456778876 899999999999999999999999999999987776521 1122221111 11 11
Q ss_pred cCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccc-hhhHHHHHHhhhhhhhhhhhHHHHHHH
Q 011831 337 QSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKH-RTMIYAFDRAFEGSFSSFAAPLVGILS 403 (476)
Q Consensus 337 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~-~g~~~g~~~~~~~~~~~~~~~~~g~l~ 403 (476)
..++ .+......++.|++.+...+ ...+..+|..|++. +|++.++.+..++++..++..+.+.+.
T Consensus 289 ~~~~-~~~~~~~~~~~G~~~g~~~~-~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 354 (393)
T PRK11195 289 LQHS-LLPAYPLLILIGALGGFFVV-PMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV 354 (393)
T ss_pred HHhH-HHHHHHHHHHHHHhhhhhhh-hHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 1222 23344556677887777666 46677788766554 799999999999999999999998663
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=265.84 Aligned_cols=361 Identities=12% Similarity=0.081 Sum_probs=261.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHH
Q 011831 10 VLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILC 89 (476)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~ 89 (476)
++.....+..+++..+...+.....++..|.+++++|+++++.|++.+.+.+++.+++++.|++.||+|||+++..+.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~ 100 (438)
T PRK10133 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 34456667778888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH---HhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcc
Q 011831 90 WAFSTAAV---GASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQ 166 (476)
Q Consensus 90 ~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~ 166 (476)
++++++++ +++++++.++++|+++|+|.+...+..++++.|+.|+++|.+.+++.+....+|..+++.+++.+....
T Consensus 101 ~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~ 180 (438)
T PRK10133 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999886 468899999999999999999999999999999887777777899999999999999999988765210
Q ss_pred cC------------C---------CCchhHHHHHHHHHHH-HHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCc
Q 011831 167 FW------------G---------VPGWRCAFILMATLSV-LIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTS 224 (476)
Q Consensus 167 ~~------------~---------~~~wr~~f~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (476)
.. + ..+||++|+....+.. +..++.+...|+.+. ++. + + ++
T Consensus 181 ~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~--~~~-~-~----------~~--- 243 (438)
T PRK10133 181 VPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS--DNH-S-D----------AK--- 243 (438)
T ss_pred CcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--ccc-c-c----------cc---
Confidence 00 0 0256777765443332 322222222222111 000 0 0 00
Q ss_pred cchhHHHHHHhhhhhccchhHHHHHHHHHhhhhh-hhHHHHHHHHH-HH-hCCChhHHHHHHHHHHhhhhhhhchhhhhh
Q 011831 225 VSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLP-WTAMVFFTMWF-EL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVA 301 (476)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~ 301 (476)
. ++..++.++++++|.++...+..++.... +....|.+.|+ ++ +|+++.+++..+....++.++++++.+++.
T Consensus 244 ~----~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~ 319 (438)
T PRK10133 244 Q----GSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLI 319 (438)
T ss_pred c----cchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11122344567778776655444443333 44447888885 55 899999999999999999999999999999
Q ss_pred hhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHH
Q 011831 302 DRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIY 381 (476)
Q Consensus 302 dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~ 381 (476)
||+++|+.. ..+..++.....+. ...+ ..+ ....+.+.|++.+...| ...+...|..|+ +.+++.
T Consensus 320 ~r~g~~~~l-------~~~~~~~~~~~~~~-~~~~---~~~--~~~~~~l~glg~~~i~P-~~~s~a~~~~~~-~~~~as 384 (438)
T PRK10133 320 SRFAPHKVL-------AAYALIAMALCLIS-AFAG---GHV--GLIALTLCSAFMSIQYP-TIFSLGIKNLGQ-DTKYGS 384 (438)
T ss_pred HHcCHHHHH-------HHHHHHHHHHHHHH-HHcC---ChH--HHHHHHHHHHHHHHHHH-HHHHHHHcccch-hhccch
Confidence 999998732 11122211111111 1111 111 23456678888888888 778888887774 577888
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHhhhh
Q 011831 382 AFDRAFEGSFSSFAAPLVGILSEKMF 407 (476)
Q Consensus 382 g~~~~~~~~~~~~~~~~~g~l~~~~~ 407 (476)
++.. ....++.++|.+.|.+.|..+
T Consensus 385 ~l~~-~~~~g~~~~~~i~G~l~~~~g 409 (438)
T PRK10133 385 SFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_pred hHHh-HHhccchHHHHHHHHHHHhcc
Confidence 8886 455788899999999999753
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-33 Score=263.95 Aligned_cols=341 Identities=15% Similarity=0.083 Sum_probs=249.7
Q ss_pred HHHHHHHHHhccchhhHHH-HHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHH-HHHHHHHHHHHHHHh
Q 011831 22 LAAIMERADENLLPSVYKE-VSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLT-IGILCWAFSTAAVGA 99 (476)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~-~~~~~~~~~~~~~~~ 99 (476)
+.++...+......+.+|. +.+++|.|+.+.|++.+.+.+...+.+++.|+++||+||||.++ .+.++..++.+++++
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~ 83 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW 83 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh
Confidence 4466677777778888876 57889999999999999999999999999999999999998755 456666777888899
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhh--HHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHH
Q 011831 100 SQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAG--FGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAF 177 (476)
Q Consensus 100 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f 177 (476)
+++++.+++.|++.|.+.+...|...+++.|+.|+++|++. .+....+.++|.+++|.+++.+.+. .+||+.|
T Consensus 84 ~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~-----~~~~~~f 158 (375)
T TIGR00899 84 NRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG-----FGFTVMF 158 (375)
T ss_pred cchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh-----cccHHHH
Confidence 99999999999999988888889989999999887777755 6888888999999999999999987 8999999
Q ss_pred HHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhh
Q 011831 178 ILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSL 257 (476)
Q Consensus 178 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (476)
++.++..++..++.++..||+++..+++ ++ + .+.++.+++|.++......+....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---------------~-------~~~~~~~~~~~~~~~~~~~~~~~~ 213 (375)
T TIGR00899 159 LTAALAFVLCGVLVWLFLPSYPRGAPGA---LT---------------R-------LEVRGLLASRDTRLLFVACTLMWG 213 (375)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccCcccc---cC---------------c-------chhhhhhcCcchHHHHHHHHHHHH
Confidence 9999887777776666555543221110 00 0 001123444555544433333333
Q ss_pred hhh-HHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhcc
Q 011831 258 PWT-AMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAI 335 (476)
Q Consensus 258 ~~~-~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (476)
... ...+.|.++++ +|.++.+.+.......+..+++.++.|++.||+++|+.. ..+........ .. .
T Consensus 214 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~-------~~~~~~~~~~~-~~---~ 282 (375)
T TIGR00899 214 CNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLM-------LLAALAGVAFY-TG---L 282 (375)
T ss_pred HHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHH-------HHHHHHHHHHH-HH---H
Confidence 222 33567888765 899999999888877777888899999999999988731 11121111111 11 1
Q ss_pred ccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 336 PQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 336 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
...++ .+.......+.|++.+...+ ....+..|..|+ ++++++++.+...+++..++|.+.|.+.|..
T Consensus 283 ~~~~~-~~~~~~~~~~~g~~~g~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~ 350 (375)
T TIGR00899 283 AADNS-LWALLMLQLLNAIFIGILAG-IGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERW 350 (375)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11122 22333445566666666555 567788898874 5679999999999999999999999999874
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=271.97 Aligned_cols=348 Identities=16% Similarity=0.202 Sum_probs=260.7
Q ss_pred HHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHhhhhh
Q 011831 42 SEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQH--FLHVGMWRAVNGFGLAI 119 (476)
Q Consensus 42 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l~G~~~~~ 119 (476)
..+++++.+|.+++.+.++.|+.+++.+.|++.||+|.|+++..+.++.++++++..++.+ ++.+++.|+++|++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 3468899999999999999999999999999999999999999999999999999999754 55779999999999999
Q ss_pred hhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhheeeccCC
Q 011831 120 VIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPR 199 (476)
Q Consensus 120 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~ 199 (476)
..|+...+.++|.|++||++..++..++..+|.+++-++++.+.+. ..||+++|++.++++++..++.+++..|.|
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s----~~GW~sifY~~g~~g~i~~~~w~~~~~d~P 220 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES----SLGWPSIFYVFGIVGLIWFILWFLFYSDSP 220 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc----CCCCchHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999999999999999985 379999999999999999999888887766
Q ss_pred CCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhhh-hhHHHHHHHHHHH-hCCChh
Q 011831 200 KKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLP-WTAMVFFTMWFEL-IGFDHS 277 (476)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~g~s~~ 277 (476)
.+.+.-.++|.++..++..++.... ....+++++++++.+|...+..+..... +...+|+|.|+++ +|++..
T Consensus 221 ~~h~~is~~El~~I~~~k~~~~~~~------~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~ 294 (466)
T KOG2532|consen 221 SKHPNISEKELKYIEKGKSEAHVKK------KPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVR 294 (466)
T ss_pred ccCCCCCHHHHHHHHhcccccccCC------CCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChh
Confidence 6544332333222221111111110 0234677789999999988887776654 5555899999998 999999
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhhhhhccccCCC--cchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHH
Q 011831 278 STAALLSLFAIGCAVGSFLGGVVADRISQAYPHS--GRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLT 355 (476)
Q Consensus 278 ~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 355 (476)
+.|++.+++.+...+..+++|.++||+.+|.... .|...-.++...... ..+.+......+. +.. +.++....+
T Consensus 295 ~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai-~l~~l~~~~~~~~-~~a--~~~l~~~~~ 370 (466)
T KOG2532|consen 295 ETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAV-FLLVLAFTSDEHR-LLA--VILLTIAIG 370 (466)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHH-HHHeeeecCCCcc-hHH--HHHHHHHHH
Confidence 9999999999999999999999999997751111 122222222222211 1112222222222 121 222222222
Q ss_pred HHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHh
Q 011831 356 ISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSE 404 (476)
Q Consensus 356 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 404 (476)
......+..+.-..+.. +++.+..+|+.+.+..+.+.++|.+.|.+..
T Consensus 371 ~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~ 418 (466)
T KOG2532|consen 371 LSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVT 418 (466)
T ss_pred HcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeC
Confidence 22222212233333434 4899999999999999999999999999984
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=263.22 Aligned_cols=344 Identities=14% Similarity=0.089 Sum_probs=244.3
Q ss_pred HHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHH
Q 011831 18 ILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAV 97 (476)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~ 97 (476)
.......+..........+.+|.+.+++|.+.++.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~ 85 (392)
T PRK10473 6 LCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLC 85 (392)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 34444455555565666788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHH
Q 011831 98 GASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAF 177 (476)
Q Consensus 98 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f 177 (476)
.++++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.+....+|..++|.+++.+.+. .+||+.|
T Consensus 86 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~-----~g~~~~~ 160 (392)
T PRK10473 86 SLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK-----FPWQSLF 160 (392)
T ss_pred HHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----cChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998876 7999999
Q ss_pred HHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhh
Q 011831 178 ILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSL 257 (476)
Q Consensus 178 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (476)
++.+++.++..++.++..+|+++..++. + ++..+..++.++++.++...........
T Consensus 161 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (392)
T PRK10473 161 YTMAAMGILVLLLSLFILKETRPARAPA-----A------------------SSKPRENSESLLNRFFLSRLVITTLSVT 217 (392)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcccCC-----c------------------cchHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 9999888777776666555543221100 0 0001122234556665544333332222
Q ss_pred -hhhHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhcc
Q 011831 258 -PWTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAI 335 (476)
Q Consensus 258 -~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (476)
......+.|.++++ +|+++.+.+...+..+++.+++.++.+++.||+++|+.. ..+..+......... .
T Consensus 218 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~-------~~~~~~~~~~~~~~~--~ 288 (392)
T PRK10473 218 VILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLM-------LTSQVLFLAAGITLA--L 288 (392)
T ss_pred HHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH-------HHHHHHHHHHHHHHH--H
Confidence 22333556777765 899999999999999999999999999999999988631 111111111111111 1
Q ss_pred ccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhh
Q 011831 336 PQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMF 407 (476)
Q Consensus 336 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~ 407 (476)
.. ..............|++.+ .+ .....+..|.++|+ |.......++..+++.+.+++.+..+
T Consensus 289 ~~-~~~~~~~~~~l~~~g~~~~--~~---~~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g 351 (392)
T PRK10473 289 SP-SHAVSLFGITLICAGFSVG--FG---VAMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLG 351 (392)
T ss_pred HH-HHHHHHHHHHHHHHHHHHH--hH---HHHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11 1112222223333343333 22 23334455544443 44444556777788888888888753
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=259.79 Aligned_cols=334 Identities=11% Similarity=0.126 Sum_probs=241.7
Q ss_pred HhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 011831 30 DENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMW 109 (476)
Q Consensus 30 ~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 109 (476)
...++.|.+|.+.+++|+++++.+++.+.+.++..++.++.|+++||+|||+++..+.++.+++.+++.++++++.+++.
T Consensus 6 ~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (377)
T PRK11102 6 AIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYM 85 (377)
T ss_pred HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHH
Q 011831 110 RAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAF 189 (476)
Q Consensus 110 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~ 189 (476)
|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+. .+||+.|++.+++.++..+
T Consensus 86 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~ 160 (377)
T PRK11102 86 RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW-----FSWHAIFWVLALAAILAAA 160 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987 8999999998888877766
Q ss_pred HhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhhh-hhHHHHHHHH
Q 011831 190 LVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLP-WTAMVFFTMW 268 (476)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 268 (476)
+..+..||++++.++. +. +.++..++.++.+++|.++...+...+.... +....+.|.+
T Consensus 161 ~~~~~~~~~~~~~~~~-----~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (377)
T PRK11102 161 LVFFFIPETLPKERRQ-----PF---------------HLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFV 220 (377)
T ss_pred HHHHhCCccCcccccC-----CC---------------ChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 6655555533211100 00 0112223445567777766655544443332 3333566776
Q ss_pred HHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHH
Q 011831 269 FEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAV 347 (476)
Q Consensus 269 ~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (476)
+.+ +|+++.+.+.......++.+++.++.+++.||+++|+.. ..+.....................+. ..+
T Consensus 221 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 292 (377)
T PRK11102 221 YIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNML-------RFGLWIQFIMGIWLVVSALLDLGFWA-LVV 292 (377)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhHHH-HHH
Confidence 665 899999999999999999999999999999999998732 11111111111111111001111122 222
Q ss_pred HHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhh-hhhhhHH
Q 011831 348 TLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSF-SSFAAPL 398 (476)
Q Consensus 348 ~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~-~~~~~~~ 398 (476)
.....+.+.+.... .......|..| +.+++++++.+...... ..+++.+
T Consensus 293 ~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 293 GVAAFVGCVSMISS-NAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred HHHHHHHHHHHhhH-HHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 22233333333333 33456677666 88999999987765433 3344443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=259.99 Aligned_cols=346 Identities=12% Similarity=0.105 Sum_probs=254.0
Q ss_pred HHHHHHHHHHHHhccchhhHH-HHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHH
Q 011831 19 LINLAAIMERADENLLPSVYK-EVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAV 97 (476)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~ 97 (476)
.+.+..++.........+.+| .+.+++|++..++|++.+.+.+++.+++++.|+++||+|||+++.++.++..++.++.
T Consensus 11 ~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~ 90 (395)
T PRK10054 11 ALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAI 90 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHH
Confidence 444555666666666666554 5667899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHH
Q 011831 98 GASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAF 177 (476)
Q Consensus 98 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f 177 (476)
+++++++.+++.|.+.|.+.+...+...++..|.+|+++|++++++.....++|.+++|.+++.+.+ .+||.+|
T Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~------~g~~~~f 164 (395)
T PRK10054 91 PLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM------QSINLPF 164 (395)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hccCcHH
Confidence 9999999999999999988888888999999999999999999999999999999999999999875 5899999
Q ss_pred HHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhh
Q 011831 178 ILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSL 257 (476)
Q Consensus 178 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (476)
++.++..++..++..+..++++++.+++ + ++. .+.++.+|+|.++......++...
T Consensus 165 ~~~~~~~~i~~i~~~~~~~~~~~~~~~~----~-------------------~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 220 (395)
T PRK10054 165 WLAAICSAFPLVFIQIWVQRSEKAIATE----T-------------------GSV-WSPSVLLQDKALLWFTCSGFLASF 220 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccc----h-------------------hhh-hhhhhhccCceehHHHHHHHHHHH
Confidence 9988877766555554443332111000 0 000 112446777777766655554444
Q ss_pred hhhHH-HHHHHHHH---HhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhh
Q 011831 258 PWTAM-VFFTMWFE---LIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLT 333 (476)
Q Consensus 258 ~~~~~-~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (476)
.+... .+.+.|+. +.+.+....+.+.....+.........|++.||.++|+.. ..+..+... ....+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l-------~~~~~~~~~-~~~~~- 291 (395)
T PRK10054 221 VSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLM-------TAGTLCFVI-GLVGF- 291 (395)
T ss_pred HHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHH-------HHHHHHHHH-HHHHH-
Confidence 33333 45566653 3566677778888888777778888889999999887631 111111111 11111
Q ss_pred ccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhh
Q 011831 334 AIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMF 407 (476)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~ 407 (476)
... .++ .+...+...+.+++.+...+ ...+.+.+..|++.+++..+..+ ...+|..+||.++|.+.|+.+
T Consensus 292 ~~~-~~~-~~~~~~~~~~~~~g~~~~~p-~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g 361 (395)
T PRK10054 292 IFS-GNS-LLLWGMSAAVFTVGEIIYAP-GEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLP 361 (395)
T ss_pred HHc-chH-HHHHHHHHHHHHHHHHHHHh-hHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcC
Confidence 111 122 23334456677777766555 66788889999999999998765 567899999999999999964
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=278.04 Aligned_cols=346 Identities=14% Similarity=0.074 Sum_probs=244.3
Q ss_pred hhHHHHHHhcCCC---CCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 011831 36 SVYKEVSEAFNAG---PSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAV 112 (476)
Q Consensus 36 ~~~~~i~~~~~~s---~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 112 (476)
+..|.+.+|+|++ ..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++.+++++++.+++.|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 5678899999998 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhh
Q 011831 113 NGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVL 192 (476)
Q Consensus 113 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~ 192 (476)
.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+ .+||+.|++.+++.++..+..+
T Consensus 190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--------~~wr~~~~~~~i~~~~~~~~~~ 261 (505)
T TIGR00898 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI--------PDWRWLQLAVSLPTFLFFLLSW 261 (505)
T ss_pred HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988665 3599999999998887777776
Q ss_pred eeeccCCCCCCCccCCCCCCChhhHhhhcCCccc---------hh--HHHHHHhhhhhccchhHHHHHHHHHhhhhhhhH
Q 011831 193 VFVVDPRKKASTFHGTGENFDRDELVEKGNTSVS---------SV--WLESWMATKAVIKVPTFQIIVLQGIVGSLPWTA 261 (476)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (476)
+.+|+|++...+++.++++...++..+.+..... .. .++.....++++++|.++...+.....+.....
T Consensus 262 ~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 341 (505)
T TIGR00898 262 FVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAF 341 (505)
T ss_pred hcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 6666665543333222211111111100000000 00 000012345677777777665554444433333
Q ss_pred HHH-HHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcc
Q 011831 262 MVF-FTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVS 340 (476)
Q Consensus 262 ~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (476)
..+ ++.+.++.+.+... .....++..+++.++.+++.||+|||+.. ..+..+..... +.....+. ..
T Consensus 342 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~l~dr~grr~~~-------~~~~~~~~~~~-l~~~~~~~-~~ 409 (505)
T TIGR00898 342 SYYGLVLDLGNLGGNIYL---DLFISGLVELPAKLITLLLIDRLGRRYTM-------AASLLLAGVAL-LLLLFVPV-DL 409 (505)
T ss_pred HHHHHhccccccCCChHH---HHHHHHHHHHHHHHHHHHHHHHhCCHHHH-------HHHHHHHHHHH-HHHHHcCC-Cc
Confidence 322 34444456665433 33345677888999999999999998732 12222211111 11111221 11
Q ss_pred hHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHh
Q 011831 341 NYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSE 404 (476)
Q Consensus 341 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 404 (476)
........++.+++.+...+ ..+.+..|.+|++.|+++.|+.+.+..+|+.++|.+.+ +.+
T Consensus 410 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~ 470 (505)
T TIGR00898 410 -YFLRTALAVLGKFGITSAFQ-MVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE 470 (505)
T ss_pred -hHHHHHHHHHHHHHHHHHHH-HHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH
Confidence 12222333444455555555 56888999999999999999999999999999999998 443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=258.97 Aligned_cols=353 Identities=15% Similarity=0.140 Sum_probs=245.6
Q ss_pred HHHHHHHHHHHHHhccchhhHHH-HHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHH
Q 011831 18 ILINLAAIMERADENLLPSVYKE-VSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAA 96 (476)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~ 96 (476)
...+++.+.........++..|. +++++|+|+.+.+++.+.+.+++.+++++.|+++||+|||+.+..+.++..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~ 83 (366)
T TIGR00886 4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLW 83 (366)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 34666677777888889999995 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhh-hHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcc-----cCCC
Q 011831 97 VGASQ-HFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQ-----FWGV 170 (476)
Q Consensus 97 ~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~-----~~~~ 170 (476)
+++++ +++.+++.|+++|++.+. .+...++++|++|+++|++++++.....++|..+++.+++.+.... ....
T Consensus 84 ~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~ 162 (366)
T TIGR00886 84 AGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH 162 (366)
T ss_pred HHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 99999 999999999999999654 5667899999999999999999999888888888888877766420 0012
Q ss_pred CchhHHH-HHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHH
Q 011831 171 PGWRCAF-ILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIV 249 (476)
Q Consensus 171 ~~wr~~f-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (476)
.+||+.| ++.+++..+..++.+...++.+++.+++++ .+....+ . ... ++..+..++.+++|.++...
T Consensus 163 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~-~~~----~~~~~~~~~~~~~~~~~~~~ 231 (366)
T TIGR00886 163 LAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGK--LSFKGAR----W-SVG----TGALGDQLKVFRDRHTWILA 231 (366)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchh--ccccccc----c-ccc----chhHHHHHHHHhccchhhHH
Confidence 5899999 544555555555544444433221111100 0000000 0 000 01112334456677777666
Q ss_pred HHHHhhhhh-hhHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhH
Q 011831 250 LQGIVGSLP-WTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPF 327 (476)
Q Consensus 250 ~~~~~~~~~-~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~ 327 (476)
+..+..... +...++.|.|+++ +|+++.+++.+.....+.+++++++.|++.||+++|+.. ... .......
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~-----~~~--~~~~~~~ 304 (366)
T TIGR00886 232 LLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKL-----LMS--FLGVAMG 304 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhH-----HHH--HHHHHHH
Confidence 555554443 3444788999987 899999999999999999999999999999999998632 111 1111111
Q ss_pred HHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhh
Q 011831 328 SWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFS 392 (476)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~ 392 (476)
. ..+......+.............++..+.... ..++...+..| +++|+++|+.+..+++|+
T Consensus 305 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~ 366 (366)
T TIGR00886 305 A-FLVVLGLVSPLSLAVFIVLFVALFFFSGAGNG-STFALVPHIFR-RATGAVSGLVGAIGNLGG 366 (366)
T ss_pred H-HHHHhcCCCcchHHHHHHHHHHHHHHhccccc-hhhhcchhhch-hhcccHHHHHHHhccCCC
Confidence 1 11111111111223233334444444444444 45777788777 799999999999888763
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=264.38 Aligned_cols=290 Identities=18% Similarity=0.251 Sum_probs=239.1
Q ss_pred HHHHHHHHHHHHHHHHHhccc-hhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHH
Q 011831 14 SLSLILINLAAIMERADENLL-PSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAF 92 (476)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~ 92 (476)
..++..++..++....+...+ ...+..+.+|.+....+.+.+.++++++++++.+++|.+.||++..+.+....+.+++
T Consensus 44 l~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~ 123 (495)
T KOG2533|consen 44 LFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGL 123 (495)
T ss_pred HHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHH
Confidence 334455566666666666544 3445557799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhccc-CCCC
Q 011831 93 STAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQF-WGVP 171 (476)
Q Consensus 93 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~-~~~~ 171 (476)
..++....+|++.+++.|++.|+.++..+|....+++.|+.++||++.++++.+..++|.++|.+++..+.+... ....
T Consensus 124 ~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~ 203 (495)
T KOG2533|consen 124 FGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLA 203 (495)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999765322 2458
Q ss_pred chhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHH
Q 011831 172 GWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQ 251 (476)
Q Consensus 172 ~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (476)
||||.|++.+++.++.+++.++++|+.|++..-.+++|++...++.+++.......+ ..+..+++.+++|.+|...++
T Consensus 204 gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~dp~vw~~~l~ 281 (495)
T KOG2533|consen 204 GWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENK--FKWKGFKEALKDPGVWPFSLC 281 (495)
T ss_pred CceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccc--cCHHHHHHHHhchhHHHHHHH
Confidence 999999999999999999999999887776644444443333233322222221111 334566778889999999888
Q ss_pred HHhhhhhh-hHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhc
Q 011831 252 GIVGSLPW-TAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRIS 305 (476)
Q Consensus 252 ~~~~~~~~-~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~ 305 (476)
.++..... +..+|+|.++++ .|+|..+++.+..+..++++++.+++|+++||.+
T Consensus 282 ~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~ 337 (495)
T KOG2533|consen 282 YFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLK 337 (495)
T ss_pred HHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHh
Confidence 88877764 456899999998 7799999999999999999999999999999953
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-31 Score=252.04 Aligned_cols=344 Identities=11% Similarity=0.048 Sum_probs=232.0
Q ss_pred HHHHHHHHHHHHHHhccchhhHHH-HHHhcCCCCCchhHHHHHHHH-HHHhhhhhhhHhhhhcCCchh-HHHHHHHHHHH
Q 011831 17 LILINLAAIMERADENLLPSVYKE-VSEAFNAGPSDLGYLTFIRNF-VQGLSSPLAGVLVINYDRPAV-LTIGILCWAFS 93 (476)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l-~~~~~~~~~G~l~dr~Grr~~-~~~~~~~~~~~ 93 (476)
.....+..++.........+.+|. +.+|+|++.+++|++.+...+ ++.++.+++|+ +||+||||. +..+.++.+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~ 95 (393)
T PRK15011 17 STAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLA 95 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHH
Confidence 344555567777776666776665 678899999999999876655 55555555555 999999986 45666777788
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcc--hhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCC
Q 011831 94 TAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVR--GAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVP 171 (476)
Q Consensus 94 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~ 171 (476)
..+.+++++++.+++.+.+.|...+...|...+++.|+.++++| +...++.+.+.++|.+++|++++.+.++ .
T Consensus 96 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~-----~ 170 (393)
T PRK15011 96 CTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG-----F 170 (393)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh-----c
Confidence 88889999999887766655555567788888999998876655 3455888999999999999999999987 8
Q ss_pred chhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHH
Q 011831 172 GWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQ 251 (476)
Q Consensus 172 ~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (476)
|||..|++.++..++..++.++..||+++++++. + ++ . +..++ +++..+.....
T Consensus 171 gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~----------~-------~~~~~------~~~~~~~~~~~ 224 (393)
T PRK15011 171 SFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLA-T--GT----------L-------EAPRR------NRRDTLLLFVI 224 (393)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhhcCccCCCCccc-c--cc----------c-------ccccc------ccccHHHHHHH
Confidence 9999999999888877777666666543221111 0 00 0 00000 00111222222
Q ss_pred HHhhhhhhh-HHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHH
Q 011831 252 GIVGSLPWT-AMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSW 329 (476)
Q Consensus 252 ~~~~~~~~~-~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (476)
.......+. ...+.|.|+++ +|+++.+++.+.....+..+++.++.|+++||+++|+.. ..+........
T Consensus 225 ~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~-------~~~~~~~~~~~- 296 (393)
T PRK15011 225 CTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLM-------RVAAVAGVCFY- 296 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH-------HHHHHHHHHHH-
Confidence 222222233 33678988876 899999999888887788889999999999999998631 11111111111
Q ss_pred hhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 330 FLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
... .. .++.+. .....++.++..+...+ ....+..|..| +++++++++.+...++|..++|.+.|.+.|..
T Consensus 297 ~~~-~~--~~~~~~-~l~~~~l~~~~~g~~~~-~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~ 367 (393)
T PRK15011 297 AGM-LM--AHSPAI-LLGLQLLNAIYIGILGG-IGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIW 367 (393)
T ss_pred HHH-HH--HhhHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 11 122222 22333333444343333 33566788888 56999999999999999999999999999974
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-31 Score=256.13 Aligned_cols=355 Identities=17% Similarity=0.201 Sum_probs=249.2
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhc-----CCchh-HHHHHHHH
Q 011831 17 LILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINY-----DRPAV-LTIGILCW 90 (476)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-----Grr~~-~~~~~~~~ 90 (476)
...+++..+..+......+..+|.+.++.|.+.+++|.+ +.....+ ++.+++|+++||+ ||||. +..+.+..
T Consensus 14 ~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~ 91 (491)
T PRK11010 14 SAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLL 91 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHH
Confidence 444555566677777788889999999999999999987 4444444 5899999999999 99985 77888888
Q ss_pred HHHHHHHHhh---hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhh-cc
Q 011831 91 AFSTAAVGAS---QHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAG-HQ 166 (476)
Q Consensus 91 ~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~-~~ 166 (476)
+++..++++. ++++.+.+.+++.|++.+...+...+++.|++|+|+|+++.++...+..+|.++++.++.++.+ .
T Consensus 92 ~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~- 170 (491)
T PRK11010 92 LVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRY- 170 (491)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 8888877775 4788899999999999999999999999999999999999999999999999999999999987 4
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHH
Q 011831 167 FWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQ 246 (476)
Q Consensus 167 ~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (476)
.|||..|++.++..++..+..++ .||+++..++ +++ . + ++..++.++.++++..+
T Consensus 171 ----~GWr~~f~i~a~l~ll~~l~~~~-~~e~~~~~~~----~~~--~-----------~---~~~~~~l~~~~~~~~~~ 225 (491)
T PRK11010 171 ----LGWQGMYWLMAALLIPCIIATLL-APEPTDTIPV----PKT--L-----------E---QAVVAPLRDFFGRNNAW 225 (491)
T ss_pred ----cCHHHHHHHHHHHHHHHHHHHHh-cCCCcccccc----ccc--h-----------h---hhHHHHHHHHHcCcCHH
Confidence 69999999999887776555554 4554321100 000 0 0 01122344455555555
Q ss_pred HHHHHHHhhhh-hhhHHHHHHHHHH-HhCCChhHHHHHHH-HHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHh
Q 011831 247 IIVLQGIVGSL-PWTAMVFFTMWFE-LIGFDHSSTAALLS-LFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFM 323 (476)
Q Consensus 247 ~~~~~~~~~~~-~~~~~~~~~~~~~-~~g~s~~~~g~~~~-~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~ 323 (476)
......+.... ......+.+.|+. +.|+++.+.+.... ...++.+++.++.|++.||+++|+. ....+...
T Consensus 226 ~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~------l~i~~~l~ 299 (491)
T PRK11010 226 LILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRA------LMIFGILQ 299 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------HHHHHHHH
Confidence 44433333323 2333467777765 49999999999875 5567999999999999999998763 11111111
Q ss_pred hhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHH
Q 011831 324 GIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILS 403 (476)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~ 403 (476)
............. .++ ........++..+..+.... ...++..+..+++.+++..|+.+...++++.+++.+.|++.
T Consensus 300 ~l~~l~~~~l~~~-~~~-~~~l~~~~~l~~~~~g~~~~-~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~ 376 (491)
T PRK11010 300 GVSNAGYWLLSIT-DKN-LYSMGAAVFFENLCGGMGTA-AFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFV 376 (491)
T ss_pred HHHHHHHHHHHhc-ccc-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111111 122 22222233332222232233 34677888889899999999999999999999999999999
Q ss_pred hhhhcC
Q 011831 404 EKMFGY 409 (476)
Q Consensus 404 ~~~~~~ 409 (476)
|.. +|
T Consensus 377 ~~~-G~ 381 (491)
T PRK11010 377 EAH-GW 381 (491)
T ss_pred HHh-Ch
Confidence 974 44
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-31 Score=252.96 Aligned_cols=352 Identities=10% Similarity=0.059 Sum_probs=258.2
Q ss_pred HHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHH
Q 011831 16 SLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTA 95 (476)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~ 95 (476)
.+..++...+..++.....++.+|.+++++|.++.+.|++.+.+.+++.+++++.|++.||+|||+++..+.++++++.+
T Consensus 4 ~~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~ 83 (410)
T TIGR00885 4 PFALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAF 83 (410)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 35567777888888888889999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHh---hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccC----
Q 011831 96 AVGA---SQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFW---- 168 (476)
Q Consensus 96 ~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~---- 168 (476)
++.. .++++.+++.|++.|+|.+...+..++++.+..|+++|++.+++.+...++|..++|.+++.+......
T Consensus 84 l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~ 163 (410)
T TIGR00885 84 LFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQ 163 (410)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchh
Confidence 8654 358999999999999999999999999999999999999999999999999999999999988643100
Q ss_pred -----------------CCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHH
Q 011831 169 -----------------GVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLE 231 (476)
Q Consensus 169 -----------------~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (476)
+..+||++|++.+++.++..++..+ .+.|+.+. ++ +++ .+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~-~~~p~~~~-~~---~~~------------------~~ 220 (410)
T TIGR00885 164 DVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIML-TKMPALNH-SD---AKQ------------------IS 220 (410)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCc-cc---ccc------------------cc
Confidence 1136999999998877665544432 22222111 00 000 00
Q ss_pred HHHhhhhhccchhHHHHHHHHHhhhhhh-hHHHHHHHHHHHh--CCChhHHHHHHHHHHhhhhhhhchhhhhhhhhcccc
Q 011831 232 SWMATKAVIKVPTFQIIVLQGIVGSLPW-TAMVFFTMWFELI--GFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAY 308 (476)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 308 (476)
...+.++++|+|.++...+..++..... ...++++.|.++. +.+...++...+....+..+|+++++++.||+++|+
T Consensus 221 ~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~ 300 (410)
T TIGR00885 221 FSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHK 300 (410)
T ss_pred chhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 0112234566777776655555544443 4447899998764 455555566666677888999999999999998886
Q ss_pred CCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhh
Q 011831 309 PHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFE 388 (476)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 388 (476)
.. ......+.....+... .++. . ....+...|++.+..+| ..++...+..+++.+..+.++....
T Consensus 301 ~l-------~i~~~~~~~~~ll~~~----~~~~-~-~~~~l~~~glf~s~~fp-~i~sl~~~~~g~~~~~~s~~l~~~~- 365 (410)
T TIGR00885 301 VL-------MAYAIIGMALCLGSIF----AGGH-V-GLYCLTLCSAFMSLMFP-TIYGIALKGLGQDTKYGAAGLVMAI- 365 (410)
T ss_pred HH-------HHHHHHHHHHHHHHHH----cCCh-H-HHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhhHHHHHHHH-
Confidence 31 1112222211111111 1121 1 23556667777777777 7888898988866554455555443
Q ss_pred hhhhhhhhHHHHHHHhhh
Q 011831 389 GSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 389 ~~~~~~~~~~~g~l~~~~ 406 (476)
+|+++.|++.|.+.|..
T Consensus 366 -~Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 366 -IGGGIVPPLQGFIIDMK 382 (410)
T ss_pred -hccchHHHHHHHHHHHh
Confidence 89999999999999964
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-31 Score=250.27 Aligned_cols=323 Identities=23% Similarity=0.393 Sum_probs=269.1
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHH
Q 011831 19 LINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVG 98 (476)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~ 98 (476)
.+.+..+....+.....+..|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+.+..+.++..++.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~ 82 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA 82 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence 45566778888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHH
Q 011831 99 ASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFI 178 (476)
Q Consensus 99 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~ 178 (476)
+.++++.+++.|++.|++.+...+...+++.|++|+|+|++.+++.+...++|..++|.+++.+.+. .+||+.++
T Consensus 83 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~ 157 (352)
T cd06174 83 FASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES-----LGWRWLFL 157 (352)
T ss_pred HhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999987 78999999
Q ss_pred HHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhhh
Q 011831 179 LMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLP 258 (476)
Q Consensus 179 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (476)
+.++..++..+...+.+ |.++......+.....
T Consensus 158 ~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~~~~~~~~~~~~ 190 (352)
T cd06174 158 ILAILGLLLALLLLFLL-----------------------------------------------RLLLLLALAFFLLSFG 190 (352)
T ss_pred HHHHHHHHHHHHHHHHH-----------------------------------------------HHHHHHHHHHHHHHhH
Confidence 99888777666654432 2233344444444443
Q ss_pred -hhHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhcccc-CCCcchhHhHHHHHhhhhHHHhhhhcc
Q 011831 259 -WTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAY-PHSGRVMCAQFSAFMGIPFSWFLLTAI 335 (476)
Q Consensus 259 -~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (476)
.....+.|.+.++ .|.++.+.+.......++..++.++.+++.||+++|+ .. ..+..+.. +.....
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-------~~~~~~~~----i~~~~~ 259 (352)
T cd06174 191 YYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLL-------LIGLLLAA----LGLLLL 259 (352)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-------HHHHHHHH----HHHHHH
Confidence 3334788888887 5999999999999999999999999999999999886 31 11111111 111111
Q ss_pred ccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 336 PQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 336 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
...++ ........++.|++.+...+ ...++..|..|+++|++.+|+.+...+++..++|.+.|.+.|..
T Consensus 260 ~~~~~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~ 328 (352)
T cd06174 260 ALAPS-LALLLVALLLLGFGLGFAFP-ALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG 328 (352)
T ss_pred HHhcc-HHHHHHHHHHHHHHHhccch-hHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 11222 34455677778888887777 78899999999999999999999999999999999999999863
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-32 Score=259.26 Aligned_cols=354 Identities=17% Similarity=0.171 Sum_probs=246.0
Q ss_pred HHHHHHhccchhhHHHHHHhcC--CCCCchhHHHHH-----HHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHH
Q 011831 25 IMERADENLLPSVYKEVSEAFN--AGPSDLGYLTFI-----RNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAV 97 (476)
Q Consensus 25 ~~~~~~~~~~~~~~~~i~~~~~--~s~~~~g~~~s~-----~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~ 97 (476)
+.+.+++..++...+.+.+++. .++++.+.+.+. ..++..+++++.|+++||+|||+++..+.++..++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 82 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI 82 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888864 445666665543 333445789999999999999999999999999999999
Q ss_pred HhhhhHH--------HHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhccc--
Q 011831 98 GASQHFL--------HVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQF-- 167 (476)
Q Consensus 98 ~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~-- 167 (476)
+++++++ .+++.|+++|++.+...+...+++.|++|+++|++..++.+.+..+|.++++.++..+.....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~ 162 (394)
T TIGR00883 83 GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD 162 (394)
T ss_pred hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 9998875 478899999999999999999999999999999999999999999999999998877653100
Q ss_pred -CCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchh--
Q 011831 168 -WGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPT-- 244 (476)
Q Consensus 168 -~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 244 (476)
....+||+.|++.+++.++...+....+|+++++.+++++ +..+. +.++.++++.
T Consensus 163 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~-------~~~~~~~~~~~~ 220 (394)
T TIGR00883 163 ALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKH---------------KKKRG-------PIRETLTKHRKP 220 (394)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhcc---------------ccccC-------CHHHHHHhchHH
Confidence 0137999999988776655443333332222211110000 00000 1112222222
Q ss_pred HHHHHHHHHhhhhh-hhHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHH
Q 011831 245 FQIIVLQGIVGSLP-WTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAF 322 (476)
Q Consensus 245 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 322 (476)
++......+..... +....+.|.|+++ +|.++.+.+.......+..+++.++.|++.||++||+.. ......
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~------~~~~~~ 294 (394)
T TIGR00883 221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVL------IIFTVL 294 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH------HHHHHH
Confidence 44444444444333 3444789999965 899999999999999999999999999999999988731 111111
Q ss_pred hhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhh-hhhhhhhhhHHHHH
Q 011831 323 MGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAF-EGSFSSFAAPLVGI 401 (476)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~-~~~~~~~~~~~~g~ 401 (476)
... ............++ .........+.|++.+...+ ...+++.|.+|++.|+++.++.... ..++..++|.+.|+
T Consensus 295 ~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~ 371 (394)
T TIGR00883 295 AAL-LAVPLLMALLDSGS-FTLFFFLVLGLALIGGMYTG-PMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAA 371 (394)
T ss_pred HHH-HHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHhh-hHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHH
Confidence 111 11011111111122 23344555666776666666 6788999999999999999985444 45677799999999
Q ss_pred HHhhhhcC
Q 011831 402 LSEKMFGY 409 (476)
Q Consensus 402 l~~~~~~~ 409 (476)
+.|+.+.+
T Consensus 372 l~~~~g~~ 379 (394)
T TIGR00883 372 LVAMTGDW 379 (394)
T ss_pred HHHHcCcc
Confidence 99986543
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-31 Score=250.35 Aligned_cols=343 Identities=12% Similarity=0.040 Sum_probs=255.6
Q ss_pred HHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhH----HHHHHHHHHHHH
Q 011831 20 INLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVL----TIGILCWAFSTA 95 (476)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~----~~~~~~~~~~~~ 95 (476)
+.+.++..........|.+|.+.+|+|.|.+++|++.+.+.+...++++++|+++||+|||... ..+..+..+ .
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~ 86 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--A 86 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--H
Confidence 4556677777778889999999999999999999999999999999999999999999985433 222222222 2
Q ss_pred HHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhH
Q 011831 96 AVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRC 175 (476)
Q Consensus 96 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~ 175 (476)
.+..+++++.+++.|.++|.+.+...|...++..++ +++|++.+|......++|.+++|++++.+.++ .|||.
T Consensus 87 ~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~-----~g~~~ 159 (382)
T TIGR00902 87 FSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM-----FDEQN 159 (382)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH-----cChhH
Confidence 444678999999999999999988899988887665 57899999999999999999999999999998 89999
Q ss_pred HHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhh
Q 011831 176 AFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVG 255 (476)
Q Consensus 176 ~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (476)
.|++.++..+ ..++.+...|+++++.+++ ++ + ++..++.++.+|+|.++...+..++.
T Consensus 160 ~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~----------~--------~~~~~~~~~~l~~~~~~~~l~~~~l~ 217 (382)
T TIGR00902 160 ILAILTAGLA-FMLIGFLIKPTIPPKDAIP---ED----------E--------SQGDSAFIALLKNPMNLRFLAAVCLI 217 (382)
T ss_pred HHHHHHHHHH-HHHHHHHcCCCCCCCcccc---cc----------c--------cccchhHHHHHcChHHHHHHHHHHHH
Confidence 9988766533 3333333333322111100 00 0 00012234577888888877766665
Q ss_pred hhhhhHH-HHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhc
Q 011831 256 SLPWTAM-VFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTA 334 (476)
Q Consensus 256 ~~~~~~~-~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (476)
...+... ++.|.|+++.|.++.+.|.......++.+++..+.+++.||+++|+. ...+... ..+.+..
T Consensus 218 ~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~-------l~~~~~~----~~~~~~~ 286 (382)
T TIGR00902 218 QGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDL-------LLISAIA----CVGRWAI 286 (382)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHH-------HHHHHHH----HHHHHHH
Confidence 5544444 78999999999999999999999999999999999999999998873 1122222 1122222
Q ss_pred cccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHh-hhhhhhhhhhHHHHHHHhhhh
Q 011831 335 IPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRA-FEGSFSSFAAPLVGILSEKMF 407 (476)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~-~~~~~~~~~~~~~g~l~~~~~ 407 (476)
....++ .+.+.....+.|+..+...+ ....++.+. |++++++++++.+. ...++..++|.++|++.|+.+
T Consensus 287 ~~~~~~-~~~~~~~q~l~g~~~~~~~~-~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g 357 (382)
T TIGR00902 287 IGAIEA-FPLIFLLQILHCGTFAVCHL-AAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG 357 (382)
T ss_pred HHhHhh-HHHHHHHHHHHHHHHHHHHH-HHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 222333 34455677888988888888 677888887 88999999999874 567888899999999999963
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=253.94 Aligned_cols=334 Identities=16% Similarity=0.134 Sum_probs=244.6
Q ss_pred ccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 011831 32 NLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRA 111 (476)
Q Consensus 32 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 111 (476)
...++.+|.+.+|+|.++++.|++.+.+.+++.+++++.|+++||+|||+++.++.++..++.+.+ .+++.+.+++.|+
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 95 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTA 95 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHH
Confidence 567889999999999999999999999999999999999999999999999999999988888877 7789999999999
Q ss_pred HHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHh
Q 011831 112 VNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLV 191 (476)
Q Consensus 112 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~ 191 (476)
+.|++.+...+....++.|++| ++|++++++.+.+.++|..+++.+++.+.+.. ..+||+.|.+.++..++....
T Consensus 96 ~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~---~~~w~~~f~~~~~~~~~~~~~- 170 (355)
T TIGR00896 96 LIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHS---GGHWQQALAWWALPALLALLA- 170 (355)
T ss_pred HHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHH-
Confidence 9999999988888889999985 68999999999999999999999999887651 124999998877654433222
Q ss_pred heeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhh-hhhHHHHHHHHHH
Q 011831 192 LVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSL-PWTAMVFFTMWFE 270 (476)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 270 (476)
+.++.++++ +++ ++ . . ....++.+|+|.++...+...+... .+...+|+|.|++
T Consensus 171 -~~~~~~~~~-~~~---~~-----------~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~ 225 (355)
T TIGR00896 171 -WIPQVRRRV-AAN---QT-----------T--T-------RLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILI 225 (355)
T ss_pred -Hhhhhcccc-CCC---CC-----------C--C-------CCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222211111 000 00 0 0 0112335566766665554444433 3445588999999
Q ss_pred HhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHH
Q 011831 271 LIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLV 350 (476)
Q Consensus 271 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (476)
+.|+++.+.+...+...++.++++++.|++.||+++|+. ....+..+..... +.+.... ... .. ....
T Consensus 226 ~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~------~~~~~~~~~~~~~-~~~~~~~-~~~-~~---~~~~ 293 (355)
T TIGR00896 226 SHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRG------IVAVLAVLQLVGL-CGLLFAP-MHG-LW---AWAL 293 (355)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchH------HHHHHHHHHHHHH-HHHHHhh-hhH-HH---HHHH
Confidence 899999999999999999999999999999999965542 1111111111111 1111111 111 11 1345
Q ss_pred HHHHHHHhhhcccccchhhc-ccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhhcC
Q 011831 351 LMGLTISWNATAANGPMFAE-VVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGY 409 (476)
Q Consensus 351 ~~g~~~~~~~~~~~~~~~~~-~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~ 409 (476)
+.|++.+...+ ...+...+ ..++++++...++.+.+.++++.++|.+.|++.|+.++|
T Consensus 294 l~g~~~g~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~ 352 (355)
T TIGR00896 294 VLGLGQGGAFP-LALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNW 352 (355)
T ss_pred HHHHhhhhHhH-HHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 66777776666 44455544 344567799999999999999999999999999998765
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-30 Score=242.65 Aligned_cols=389 Identities=14% Similarity=0.074 Sum_probs=272.3
Q ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHH--------HhcCC--CCCc----hhHHHHHHHHHHHhhhhhhhHhhhhcCC
Q 011831 14 SLSLILINLAAIMERADENLLPSVYKEVS--------EAFNA--GPSD----LGYLTFIRNFVQGLSSPLAGVLVINYDR 79 (476)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--------~~~~~--s~~~----~g~~~s~~~l~~~~~~~~~G~l~dr~Gr 79 (476)
........++.+-.+++...+++..+.+. +.+|. ++++ .+.+.+.+.+|.++|+...|.++||+||
T Consensus 10 ~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GR 89 (485)
T KOG0569|consen 10 LLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGR 89 (485)
T ss_pred HHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444555556777777777777655443 34553 3332 4567899999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHH
Q 011831 80 PAVLTIGILCWAFSTAAVGAS---QHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGG 156 (476)
Q Consensus 80 r~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~ 156 (476)
|..+.++.++..++.+++.++ +++..++++|++.|+..|......+-++.|..|++.||......+.+..+|.+++.
T Consensus 90 K~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~ 169 (485)
T KOG0569|consen 90 KNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQ 169 (485)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHH
Confidence 999999999988888877764 78899999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCC-CccCCCCCCChhhHhhhcCCcc----------
Q 011831 157 VLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKAS-TFHGTGENFDRDELVEKGNTSV---------- 225 (476)
Q Consensus 157 ~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------- 225 (476)
.++..-.- +....|++.+....+++++..++..+++|+|++.-. +++++|++...+....+++.+.
T Consensus 170 ~~~l~~il---Gt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~ 246 (485)
T KOG0569|consen 170 VLGLPSLL---GTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIE 246 (485)
T ss_pred HHccHHhc---CCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 66643221 123679999999999999999999999999998765 3333332211111111100000
Q ss_pred -chhHHHHHHhhhhhccchhHHH-----HHHHHHhhhh-hhhHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhh
Q 011831 226 -SSVWLESWMATKAVIKVPTFQI-----IVLQGIVGSL-PWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGG 298 (476)
Q Consensus 226 -~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g 298 (476)
+...++.....+++++++..+. +.+....... .+....|...++++.|+++.++-......++...+.++++.
T Consensus 247 ~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~ 326 (485)
T KOG0569|consen 247 EEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSP 326 (485)
T ss_pred HhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000001112334455433332 2222222333 34444677888889999999999999999999999999999
Q ss_pred hhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccC-cchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccch
Q 011831 299 VVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQS-VSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHR 377 (476)
Q Consensus 299 ~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~ 377 (476)
++.||.|||+.. +.....+........+........ +......+++.+.+.+.++....|+.+-+.+|++|++.|
T Consensus 327 ~lid~~gRRpLl----l~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R 402 (485)
T KOG0569|consen 327 FLIDRLGRRPLL----LISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSAR 402 (485)
T ss_pred HHHHhcCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccch
Confidence 999999999732 111111111111111222222222 111122345555666666666666889999999999999
Q ss_pred hhHHHHHHhhhhhhhhhhhHHHHHHHhhhhcC
Q 011831 378 TMIYAFDRAFEGSFSSFAAPLVGILSEKMFGY 409 (476)
Q Consensus 378 g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~ 409 (476)
+.+.++...+..+...+-......+.+..++|
T Consensus 403 ~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~ 434 (485)
T KOG0569|consen 403 SAAQSVATAVNWLSNFIVGFAFPPLQNVIGPY 434 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 99999999999999999999999999987653
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=257.04 Aligned_cols=384 Identities=15% Similarity=0.187 Sum_probs=297.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHH
Q 011831 10 VLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILC 89 (476)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~ 89 (476)
.-+.|.+....++......-....++.+.+.++++++.+.++++|+.++....+.+..|+.+.+.||+|.|.+.+.|.++
T Consensus 41 GG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v 120 (509)
T KOG2504|consen 41 GGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLV 120 (509)
T ss_pred CCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHH
Confidence 34567777777777777776667778889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHH-HHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccC
Q 011831 90 WAFSTAAVGASQHFLHVGMW-RAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFW 168 (476)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~-r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~ 168 (476)
.+++.++.+|++++|++++. -++.|+|.+..+.....++..++ +|+|+.+.|+...+.++|..+-|.+...+.+.
T Consensus 121 ~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~--- 196 (509)
T KOG2504|consen 121 AALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSK--- 196 (509)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHH---
Confidence 99999999999999988765 78999999999999999999888 88999999999999999999999999999998
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCC---------------------ccCCCCCCChh----hHhhhcCC
Q 011831 169 GVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKAST---------------------FHGTGENFDRD----ELVEKGNT 223 (476)
Q Consensus 169 ~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~----~~~~~~~~ 223 (476)
.|||+.+++.+.+.+-..+......|.+....+. ...++.+...+ +....++.
T Consensus 197 --~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (509)
T KOG2504|consen 197 --YGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRG 274 (509)
T ss_pred --hCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhC
Confidence 9999999999998876666666655532221111 00000000000 00000000
Q ss_pred ccchhHHHHHHhh----hhhccchhHHHHHHHHHhhhhhhhHH-HHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhh
Q 011831 224 SVSSVWLESWMAT----KAVIKVPTFQIIVLQGIVGSLPWTAM-VFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGG 298 (476)
Q Consensus 224 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g 298 (476)
+++.......+.. .++++++.++.+.+...+....+... .++|.|.++.|++..+++.+.++.++..++++++.|
T Consensus 275 ~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G 354 (509)
T KOG2504|consen 275 PDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILG 354 (509)
T ss_pred CccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhh
Confidence 0000000111111 46888999999988888877766555 789999999999999999999999999999999999
Q ss_pred hhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchh
Q 011831 299 VVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRT 378 (476)
Q Consensus 299 ~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g 378 (476)
++.|+...++.. +.. ++.....+.....+...+ ...+.....++|+..+.... .....+.|+.+.++..
T Consensus 355 ~laD~~~~~~~~-----~~~----~~ll~~gl~~~~~p~~~~-~~~l~~~~~~fG~~~g~~~~-l~~~i~~~~~g~~~l~ 423 (509)
T KOG2504|consen 355 LLADKPGIRALV-----LFL----LTLLIAGLARLFLPFATT-YVGLIVFSILFGFCVGSFSS-LTPVILVDLVGLEKLS 423 (509)
T ss_pred hhcCccccchHH-----HHH----HHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcChhhcc
Confidence 999999854421 222 222222222233344444 34566778888888887777 6667889999999999
Q ss_pred hHHHHHHhhhhhhhhhhhHHHHHHHhhhhcCC
Q 011831 379 MIYAFDRAFEGSFSSFAAPLVGILSEKMFGYD 410 (476)
Q Consensus 379 ~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 410 (476)
.+.|+...+..++..+||++.|++.|.+++|+
T Consensus 424 ~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~ 455 (509)
T KOG2504|consen 424 NAYGLLLLFQGIGALVGPPIAGLLYDITGNYD 455 (509)
T ss_pred hHHHHHHHHhHHHHHcCcccceeeeeccCCee
Confidence 99999999999999999999999999988873
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-30 Score=258.46 Aligned_cols=429 Identities=14% Similarity=0.152 Sum_probs=292.0
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHH
Q 011831 17 LILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAA 96 (476)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~ 96 (476)
+...++..+.........+..++.++++|+++.++.|++.+.+.+++.++.++.|++.||+|||+++.++.+++++++++
T Consensus 35 ~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll 114 (633)
T TIGR00805 35 SLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFL 114 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHH
Confidence 34455567777777888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhh---------------------------------------------------hHHHHHHHHHHHHhhhhhhhhHHH
Q 011831 97 VGASQ---------------------------------------------------HFLHVGMWRAVNGFGLAIVIPALQ 125 (476)
Q Consensus 97 ~~~~~---------------------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~ 125 (476)
+++.+ .+..++++|+++|+|.+...+...
T Consensus 115 ~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~ 194 (633)
T TIGR00805 115 LSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGI 194 (633)
T ss_pred HhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCc
Confidence 98763 245678899999999999999999
Q ss_pred HHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhccc-C------------CC----CchhHHHHHHHHHHHHHH
Q 011831 126 SFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQF-W------------GV----PGWRCAFILMATLSVLIA 188 (476)
Q Consensus 126 ~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~-~------------~~----~~wr~~f~i~~~~~~~~~ 188 (476)
+++.|++|+++|++++++++.+..+|.++|+++++.+.+... . .+ .+||..|++.+++.++.+
T Consensus 195 ~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~ 274 (633)
T TIGR00805 195 SYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTS 274 (633)
T ss_pred hhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999886410 0 00 037888999999888877
Q ss_pred HHhheeeccCCCCCCCcc--CCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhhh-hhHHHHH
Q 011831 189 FLVLVFVVDPRKKASTFH--GTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLP-WTAMVFF 265 (476)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 265 (476)
++.++++++.+....+.+ .++++...+.. .+.........++..+..+.++++|.++...+..++.... ++..+|+
T Consensus 275 v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~l 353 (633)
T TIGR00805 275 IPFFFFPKALPKEGKRVNVDVHETEKLEKSE-DKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFL 353 (633)
T ss_pred HHHHhCccccCCcccccchhhhhhhcccccc-cccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776666655443211110 00000000000 0000001112344556677899999999888777776655 4455899
Q ss_pred HHHHHH-hCCChhHHHHHHHHHHh-hhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhc---------
Q 011831 266 TMWFEL-IGFDHSSTAALLSLFAI-GCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTA--------- 334 (476)
Q Consensus 266 ~~~~~~-~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 334 (476)
|.|+++ +|+++.+++.+.....+ +.+++.+++|+++||++.+..... .......+++.......++.
T Consensus 354 P~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~C~~~~~ag 431 (633)
T TIGR00805 354 PKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAA--YFAICLSTLSYLLCSPLFLIGCESAPVAG 431 (633)
T ss_pred HHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHH--HHHHHHHHHHHHHHHHHHeecCCCCccce
Confidence 999987 99999999999887776 568999999999999985532110 01111111111100000000
Q ss_pred --------------c----------c----------------------------------------------------c-
Q 011831 335 --------------I----------P----------------------------------------------------Q- 337 (476)
Q Consensus 335 --------------~----------~----------------------------------------------------~- 337 (476)
. . -
T Consensus 432 v~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~~y~~CsCi~~~~~~~a~~g~C~ 511 (633)
T TIGR00805 432 VNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNMVYTNCSCVQTPGNSSAKKGLCN 511 (633)
T ss_pred eeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcceecccccccCCCCCCCcCCCCC
Confidence 0 0 0
Q ss_pred -C-cchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhh-hhhHHHHHHHhhhhcCCC-C-
Q 011831 338 -S-VSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSS-FAAPLVGILSEKMFGYDS-K- 412 (476)
Q Consensus 338 -~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~-~~~~~~g~l~~~~~~~~~-~- 412 (476)
. ......+.+.+++..+..+.... .....+.+.+|+++|+.+.|+...+..+.+. -+|.+.|++.|..--.-. .
T Consensus 512 ~~C~~~~~~f~~~~~~~~~~~~~~~~-p~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~iD~sC~~W~~~~ 590 (633)
T TIGR00805 512 PPCATSLLYFLILFIPLSFIAFITAV-PLYMVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLLIDVSCLHWQTLC 590 (633)
T ss_pred cccchhHHHHHHHHHHHHHHHHhccC-chheEEeeccCcccchHHhhHHHHHHHHhcCCChhHHHhhhhhchhheecccc
Confidence 0 00122233333333333344444 3456777889999999999999999888665 999999999998765322 2
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011831 413 AIDPVMGSPREALALSRGLLSMMAVPFGLCCLFYTPL 449 (476)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (476)
.++....-..+...++..++.+....-.++.+..+..
T Consensus 591 cg~~g~C~~Yd~~~l~~~~~~~~~~~~~~~~~~~~~~ 627 (633)
T TIGR00805 591 CGARGACRMYDNDNLRNIYLGLTIALRGSGLLLLFFI 627 (633)
T ss_pred CCCCCceeeechHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222234445555555555544444444443333
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=242.56 Aligned_cols=355 Identities=16% Similarity=0.158 Sum_probs=273.0
Q ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHH
Q 011831 15 LSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFST 94 (476)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~ 94 (476)
+.+..++.+.++..+...+....++.+..+..-|+..++++..+..+...+.++++|.++||++|||+++.+.++.++..
T Consensus 10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~ 89 (524)
T PF05977_consen 10 RNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVA 89 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 44556677777888888888888888888888899999999999999999999999999999999999999998887776
Q ss_pred HHHHhh-----hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCC
Q 011831 95 AAVGAS-----QHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWG 169 (476)
Q Consensus 95 ~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~ 169 (476)
++.++. .+.+.+++.-++.|++.+...|+.++++.|..|+++..+++++.+...++..++||.++|.+...
T Consensus 90 ~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~---- 165 (524)
T PF05977_consen 90 LLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAF---- 165 (524)
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHH----
Confidence 665543 46788999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHH
Q 011831 170 VPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIV 249 (476)
Q Consensus 170 ~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (476)
.|-.+.|.+.++..++.........+++++.. .. ++...++.+..++...++|.....+
T Consensus 166 -~G~~~~f~inalsfl~~i~~l~~~~~~~~~~~-~~-------------------~e~~~~~l~~G~ryv~~~~~l~~~l 224 (524)
T PF05977_consen 166 -FGAAAAFLINALSFLISILALLRWKPPPPPSS-LP-------------------RERFFSALREGLRYVRSSPPLRSVL 224 (524)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHccccccccc-cc-------------------hhhhhhhHHHHHHHHhcchHHHHHH
Confidence 78899999988766555444443332221111 10 0112244455555566667666555
Q ss_pred HHHHhhhhhh-hHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhH
Q 011831 250 LQGIVGSLPW-TAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPF 327 (476)
Q Consensus 250 ~~~~~~~~~~-~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~ 327 (476)
...+...... .....+|.+.++ +|.++...|++.+..++++++|.++.+++.+|+++++.. .. +. ..
T Consensus 225 ~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv------~~-~~----~~ 293 (524)
T PF05977_consen 225 LRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLV------LL-AS----LL 293 (524)
T ss_pred HHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhh------HH-HH----HH
Confidence 5444433332 333568988876 899999999999999999999999999998888776531 11 11 11
Q ss_pred HHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhh
Q 011831 328 SWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMF 407 (476)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~ 407 (476)
..+........++ .+...+.+++.|++...... ...+..++..|++.||+++++.+++...+..+|..+.|.+.|..+
T Consensus 294 ~a~~~~~lal~~~-~~~~~~~l~l~G~~~~~~~~-~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g 371 (524)
T PF05977_consen 294 FALALLLLALSPS-FWLALIALFLAGAAWIIANS-SLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG 371 (524)
T ss_pred HHHHHHHHhcchH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1122222222333 34455667788888887777 678899999999999999999999999899999999999999864
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=221.39 Aligned_cols=351 Identities=20% Similarity=0.186 Sum_probs=276.4
Q ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHH
Q 011831 14 SLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFS 93 (476)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~ 93 (476)
+..+..+.+..+--.-..+.++|+++++++|+|.|.+..|+++++..+...+.+++..++..|+|.++.+..++++.+++
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G 90 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG 90 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 55555555555555667778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCch
Q 011831 94 TAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGW 173 (476)
Q Consensus 94 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~w 173 (476)
.++-... +.+.++.+-.+.|.|.+......++.|.+.+ ||+-+..+|++.+..++|..+++.+...+.++. .+|
T Consensus 91 ~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~F-pk~~~~mtglYs~sl~~~aaLaa~lavpla~~~----~gW 164 (395)
T COG2807 91 ILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDF-PKRVGLMTGLYSTSLGAGAALAAALAVPLAQHS----GGW 164 (395)
T ss_pred HHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhc-ccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh----ccH
Confidence 9998887 7888899999999999999999999999999 677899999999999999999999999999971 489
Q ss_pred hHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHH
Q 011831 174 RCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGI 253 (476)
Q Consensus 174 r~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (476)
|.....-+.++++..+.++.-. .++...+. +....+...++|+|.-|.+.+++.
T Consensus 165 ~~aL~~WAl~allAl~~WlPq~--~r~~~~~~------------------------~~~~~~~~~vw~~~~aW~vtLfmG 218 (395)
T COG2807 165 RGALGFWALLALLALLIWLPQA--LREQAASI------------------------ATKLVSVRKVWRSPLAWQVTLFMG 218 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc--cccccccc------------------------ccccccccccccCchhHHHHHHHH
Confidence 9999999999877766655332 11111000 000112234788888888777777
Q ss_pred hhhh-hhhHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhh
Q 011831 254 VGSL-PWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLL 332 (476)
Q Consensus 254 ~~~~-~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (476)
++.. .|..+.|+|.++.|.|+|+.++|.+.+...+.+++.++....+.+|...+|+. ... ...+.......+
T Consensus 219 lqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~-----~~~--~~~~~l~G~~G~ 291 (395)
T COG2807 219 LQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPL-----VVL--ALLLMLVGLVGL 291 (395)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchH-----HHH--HHHHHHHHHHHH
Confidence 6665 56666999999999999999999999999999999999999999997666642 111 111122222222
Q ss_pred hccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhccc-CccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhhcC
Q 011831 333 TAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVV-PAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGY 409 (476)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~ 409 (476)
...+.... . .. .++.|++.+..++ ...+.+.+.. .++..+.-.|+.+.++++-.++||.+.|++.|.+++|
T Consensus 292 ~~~P~~~~--~-lw--~~llG~G~G~~F~-laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw 363 (395)
T COG2807 292 LLAPGQLP--I-LW--ALLLGLGQGGAFP-LALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSW 363 (395)
T ss_pred HHhhhhHH--H-HH--HHHHhCccchHHH-HHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCCh
Confidence 22222221 1 11 4678888777777 5555555444 5567788999999999999999999999999999987
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=241.31 Aligned_cols=347 Identities=13% Similarity=0.051 Sum_probs=236.2
Q ss_pred HHHHHHHHHHhccc-hhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCC-chhHHHHHHHHHHHHHHHH
Q 011831 21 NLAAIMERADENLL-PSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDR-PAVLTIGILCWAFSTAAVG 98 (476)
Q Consensus 21 ~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Gr-r~~~~~~~~~~~~~~~~~~ 98 (476)
++.++..+...... ++..+.+.+++|.+.+|+|++.+.+.++..++++++|+++||+|| |+++.++.++.+++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~ 87 (418)
T TIGR00889 8 KFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAA 87 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555 666677888899999999999999999999999999999999965 7788999999989998999
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhh--------cCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCC
Q 011831 99 ASQHFLHVGMWRAVNGFGLAIVIPALQSFIADS--------YKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGV 170 (476)
Q Consensus 99 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~--------~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~ 170 (476)
+.++++.+++.|++.|++.+...+...++..++ .....|.|..| .+|.+++|.+++.+...
T Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~----- 156 (418)
T TIGR00889 88 QVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIE----- 156 (418)
T ss_pred HhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhccc-----
Confidence 999999999999999998877777666654322 22334555554 47888899999887332
Q ss_pred CchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHH
Q 011831 171 PGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVL 250 (476)
Q Consensus 171 ~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (476)
..|+ +|++.++..++..+..+ ..||+++..+++ +. +. + +......++.+|+|.++...+
T Consensus 157 ~~~~-~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~---~~--~~-----------~---~~~~~~~~~~~k~~~~~~~~~ 215 (418)
T TIGR00889 157 LSNI-QLYITAGSSALLGVFAL-TLPDIPVAKSTA---KM--SI-----------K---VMLGLDAFILFKNKRMAIFFF 215 (418)
T ss_pred chhH-HHHHHHHHHHHHHHHHh-cCCCCCCCcccc---cc--CH-----------H---HHhhhhHHHHhcCCCeeeHHH
Confidence 3455 45566666665555444 444433211110 00 00 0 011112234677777766666
Q ss_pred HHHhhhhhh-hHHHHHHHHHHHhCCCh--------hHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHH
Q 011831 251 QGIVGSLPW-TAMVFFTMWFELIGFDH--------SSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSA 321 (476)
Q Consensus 251 ~~~~~~~~~-~~~~~~~~~~~~~g~s~--------~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 321 (476)
..++..... ....+.|.++++.|.++ ...+...+...+..+++.+..|++.||+++|+. ...+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~-------l~~~~ 288 (418)
T TIGR00889 216 FSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKV-------MLLSL 288 (418)
T ss_pred HHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-------HHHHH
Confidence 555544433 23367788888877554 566888889999999999999999999999873 12222
Q ss_pred HhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHH-hhhhhhhhhhhHHHH
Q 011831 322 FMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDR-AFEGSFSSFAAPLVG 400 (476)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~-~~~~~~~~~~~~~~g 400 (476)
++..... ..+............+.+..++.|++.+...+ ....++.|.+|+++|++++|+.+ ....++..+||.+.|
T Consensus 289 ~~~~v~~-~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~-~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G 366 (418)
T TIGR00889 289 VAWALRF-GFFAYGDPEYFGYALLFLSMIVYGCAFDFFNI-SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSG 366 (418)
T ss_pred HHHHHHH-HHHHHcCcchhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2211111 11111111111123344566777777776665 56788899999999999999997 567889999999999
Q ss_pred HHHhhhhc
Q 011831 401 ILSEKMFG 408 (476)
Q Consensus 401 ~l~~~~~~ 408 (476)
++.|+.++
T Consensus 367 ~l~~~~g~ 374 (418)
T TIGR00889 367 VMVEKMFA 374 (418)
T ss_pred HHHHHhcc
Confidence 99998653
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=239.64 Aligned_cols=339 Identities=15% Similarity=0.090 Sum_probs=242.4
Q ss_pred HHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCc----hhHHHHHHHHHHHHHHHHh
Q 011831 24 AIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRP----AVLTIGILCWAFSTAAVGA 99 (476)
Q Consensus 24 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr----~~~~~~~~~~~~~~~~~~~ 99 (476)
++..........|.+|.+.+|+|.|.+++|++.+++.++..++++++|+++||+||| +.+.+..... .......
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~ 90 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFG 90 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHh
Confidence 444455567888999999999999999999999999999999999999999999994 3333222222 2233344
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHH
Q 011831 100 SQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFIL 179 (476)
Q Consensus 100 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i 179 (476)
++++|.+++.|++.|++.+...|...+++.++ +++|+++++......++|.++||++++++.++ .|||..|++
T Consensus 91 ~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~-----~g~~~~f~~ 163 (382)
T PRK11128 91 AHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW-----FGEQAILWI 163 (382)
T ss_pred cccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH-----cChhHHHHH
Confidence 68899999999999999999999888888877 46788999999999999999999999999997 899999998
Q ss_pred HHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhhhh
Q 011831 180 MATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPW 259 (476)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (476)
.++..++..+.. +..||++++.+ + +++ . ++..++.++.+|+|.++...+..++....+
T Consensus 164 ~~~~~~~~~~~~-~~~~~~~~~~~---~-~~~----------~-------~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~ 221 (382)
T PRK11128 164 LTAGVASMLLGQ-LLRPTIMPQGE---S-RQQ----------E-------SAGWPAWKALLKEPTVWRFLLCVSLLQGSH 221 (382)
T ss_pred HHHHHHHHHHHH-HccCCCCCccc---c-ccc----------c-------ccccchHHHHHcChhHHHHHHHHHHHHHHh
Confidence 876554443333 33333221110 0 000 0 001123456778888887766555544444
Q ss_pred h-HHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccC
Q 011831 260 T-AMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQS 338 (476)
Q Consensus 260 ~-~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (476)
. ..++.|.|+++.|+++.+.|...+...++.++..++.+++.||+++|+. ...+..... +........
T Consensus 222 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~-------l~~~~~~~~----~~~~~~~~~ 290 (382)
T PRK11128 222 AAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDL-------LLLSAICGV----VRWGLMGST 290 (382)
T ss_pred HhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-------HHHHHHHHH----HHHHHHHhh
Confidence 3 4477889998899999999999998889999999999999999998873 111121111 111111122
Q ss_pred cchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhh-hhhhhhhhhHHHHHHHhhhh
Q 011831 339 VSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAF-EGSFSSFAAPLVGILSEKMF 407 (476)
Q Consensus 339 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~-~~~~~~~~~~~~g~l~~~~~ 407 (476)
++ .+...+..++.|++.+...+ ....+..+. +++++++..+..+.. ...+..++|.++|.+.|..+
T Consensus 291 ~~-~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g 357 (382)
T PRK11128 291 TA-LPWLIVIQILHCGTFTVCHL-AAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG 357 (382)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33 33345567777887777666 566777775 556778999988744 45566799999999999863
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=242.70 Aligned_cols=348 Identities=15% Similarity=0.084 Sum_probs=223.1
Q ss_pred HHHHHHHHHhccchhhHH-HHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHH--
Q 011831 22 LAAIMERADENLLPSVYK-EVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVG-- 98 (476)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~-- 98 (476)
+..++.........+.+| .+.+++|+++.+.|++.+.+.++..++++++|+++||+|||+++.++..+.+++.....
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~ 96 (420)
T PRK09528 17 LFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIY 96 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence 444555554455555555 45556999999999999999999999999999999999999999887766665543221
Q ss_pred -hhhh-----HHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCc
Q 011831 99 -ASQH-----FLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPG 172 (476)
Q Consensus 99 -~~~~-----~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~ 172 (476)
.++. ....++.+++.|.+.....+....+..+ . ++++++.+|......++|..++|++++.+.+ .+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~------~~ 168 (420)
T PRK09528 97 VFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN------IN 168 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh------cC
Confidence 1111 1112223333443333333333333322 2 3567888999999999999999999999976 58
Q ss_pred hhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHH
Q 011831 173 WRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQG 252 (476)
Q Consensus 173 wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (476)
|+++|++.+++.++..++.++..++++++.... ++++ ++ +++. ..++.+..+|+|.++...+..
T Consensus 169 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------~~--~~~~----~~~~~~~~l~~~~~~~l~l~~ 232 (420)
T PRK09528 169 PQINFWLGSGSALILLVLLFFAKPDAPSTAKVA-NALG---------AN--ASAV----SLKDALALLKLPKFWFLVLYV 232 (420)
T ss_pred chHhHHHHHHHHHHHHHHHhcccccccchhhhc-cchh---------cc--cccc----cHHHHHHHccCCCeEeehHHH
Confidence 999999988887776666666555443321111 0000 00 0011 122334566777766555444
Q ss_pred HhhhhhhhHH-HHHHHHHHH----hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhH
Q 011831 253 IVGSLPWTAM-VFFTMWFEL----IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPF 327 (476)
Q Consensus 253 ~~~~~~~~~~-~~~~~~~~~----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~ 327 (476)
+.....+... .+.|.|+.+ .+.+..+.+.+.+...+..+++.++.|++.||+++|+.. .....+.+...
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~------~~~~~l~~~~~ 306 (420)
T PRK09528 233 IGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNAL------LLAGTIMAVRI 306 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhh------HHHHHHHHHHH
Confidence 3333333333 456666654 356667888999999999999999999999999998742 11111111111
Q ss_pred HHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHH-HHhhhhhhhhhhhHHHHHHHhhh
Q 011831 328 SWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAF-DRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~-~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
... . ..++.+. +.....+.|++.+...+ ....++.|..|++.+++..+. .+...++|..++|.+.|++.|..
T Consensus 307 --~l~-~--~~~~~~~-~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~ 379 (420)
T PRK09528 307 --IGS-G--FATGPLE-VSILKLLHAFEVPFLLV-GVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI 379 (420)
T ss_pred --HHH-H--hcccHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111 1 1222232 33445566666655544 456788888999999988766 67778899999999999999985
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-29 Score=269.13 Aligned_cols=360 Identities=14% Similarity=0.053 Sum_probs=250.9
Q ss_pred HHHHHHHHHHHHHhccchhhH-HHHHHhcCCCC-CchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHH---HHHHHHH
Q 011831 18 ILINLAAIMERADENLLPSVY-KEVSEAFNAGP-SDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTI---GILCWAF 92 (476)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~-~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~---~~~~~~~ 92 (476)
...++..+.+.+....+.... ..+.++.+.+. ...++..+++.+++.++++++|+++||+|||+++.. ..+...+
T Consensus 18 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~ 97 (1140)
T PRK06814 18 WTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAA 97 (1140)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHH
Confidence 333444444444443333332 23444443332 346888899999999999999999999999997533 2233333
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCc
Q 011831 93 STAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPG 172 (476)
Q Consensus 93 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~ 172 (476)
..+.....++++.++++|+++|++.+...|+..+++.|++|+++|++++++.+++.++|.++||++++++... .+
T Consensus 98 ~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~-----~~ 172 (1140)
T PRK06814 98 LAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS-----GN 172 (1140)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc-----cc
Confidence 3333334589999999999999999999999999999999999999999999999999999999999999987 89
Q ss_pred hhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHH
Q 011831 173 WRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQG 252 (476)
Q Consensus 173 wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (476)
|++.|...++..++..++.++ .++++......+. + ....++....++.+.++|.++...+..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (1140)
T PRK06814 173 FVILVALLMGIAVLGWLASLF-IPKTGNAAPDLKI-D----------------RNIIRSTITLLKYAKADKRIWLAILGI 234 (1140)
T ss_pred cHHHHHHHHHHHHHHHHHHhh-CCCCCCCCCCCee-c----------------cchHHHHHHHHHHHhcCchHHHHHHHH
Confidence 999995555554444444333 3333221111100 0 001122334566677888888877766
Q ss_pred Hhhhhhh-hHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHh
Q 011831 253 IVGSLPW-TAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWF 330 (476)
Q Consensus 253 ~~~~~~~-~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (476)
+..+... ...+++|.|+++ +|.++.+.|.+.+..+++.+++.++.|++.||..+++... ...++.+.....+
T Consensus 235 ~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~------~~~~~~~~~~~~l 308 (1140)
T PRK06814 235 SWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVP------IGALLMGLFGLDL 308 (1140)
T ss_pred HHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeeh------HHHHHHHHHHHHH
Confidence 6655544 444789999987 8999999999999999999999999999998877665321 1111111111111
Q ss_pred hhh---------------ccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhh
Q 011831 331 LLT---------------AIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFA 395 (476)
Q Consensus 331 ~~~---------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~ 395 (476)
... ......+ .+.+.+..+++|++.+...+ ...+++++..|++.+|+++|+.+.+.+++..++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig 386 (1140)
T PRK06814 309 AFASSSVPAEPAQLKSILVFLSKRH-GWRILIDLFGLAAAGGLYIV-PLFAALQAWANPAHRARVIAANNVLNAAFMVAG 386 (1140)
T ss_pred Hhcccccccccccccchhhhhcccc-cHHHHHHHHHHHHHHHHhHH-HHHHHHHhhCCcccceeeeHHHHHHHHHHHHHH
Confidence 110 0000122 23344666777888877777 678999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhc
Q 011831 396 APLVGILSEKMFG 408 (476)
Q Consensus 396 ~~~~g~l~~~~~~ 408 (476)
+.+.|.+.+...+
T Consensus 387 ~~~~g~l~~~~~~ 399 (1140)
T PRK06814 387 TIILALLQALGFS 399 (1140)
T ss_pred HHHHHHHHHhccC
Confidence 9999999865433
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-29 Score=235.87 Aligned_cols=323 Identities=15% Similarity=0.158 Sum_probs=232.5
Q ss_pred ccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhc-----CCchh-HHHHHHHHHHHHHHHHhh---hh
Q 011831 32 NLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINY-----DRPAV-LTIGILCWAFSTAAVGAS---QH 102 (476)
Q Consensus 32 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-----Grr~~-~~~~~~~~~~~~~~~~~~---~~ 102 (476)
...++.+|.+.+|+|+|.+++|+..+. .+...+ .+++|+++||+ ||||. ++.+.++.++...+.++. .+
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~ 82 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD 82 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence 356778899999999999999999755 555555 99999999998 89996 567888888887777777 56
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCc--------hh
Q 011831 103 FLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPG--------WR 174 (476)
Q Consensus 103 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~--------wr 174 (476)
++.+....++.+++.+...++..+++.|++|+|+|+++.++...+.++|.++++.+++.+.+. .+ ||
T Consensus 83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~-----~g~~~~~~~~wr 157 (356)
T TIGR00901 83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASP-----EFANTGLITLWG 157 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhh-----cccccccccccH
Confidence 677788888899999999999999999999999999999999999999999999999999876 55 99
Q ss_pred HHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchh---HHHHHHH
Q 011831 175 CAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPT---FQIIVLQ 251 (476)
Q Consensus 175 ~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 251 (476)
..|++.++..++..+..++..||+++..+. + ++ ..++..+..++++++|. ++...+.
T Consensus 158 ~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~----~-----~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (356)
T TIGR00901 158 YIFFWTALLILPGLLVTLFLAKEPQEDASV----P-----KP-----------LTQAVLKPIREFFQRKNMIQALLLLLL 217 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCccccc----c-----hh-----------HHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 999999988777665555555554321100 0 00 00112233444555553 5544444
Q ss_pred HHhhhh-hhhHHHHHHHHHHHhCCChhHHHHHHHHHH-hhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHH
Q 011831 252 GIVGSL-PWTAMVFFTMWFELIGFDHSSTAALLSLFA-IGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSW 329 (476)
Q Consensus 252 ~~~~~~-~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (476)
.++... .+...++.|.|+++.|+++.+.+......+ +..+++.++++++.||+++|+.. ... .++......
T Consensus 218 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l------~~~-~~~~~~~~~ 290 (356)
T TIGR00901 218 IVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYAL------LLF-GIVQALTNA 290 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHH------HHH-HHHHHHHHH
Confidence 444333 344557899999889999999998887766 57789999999999999988731 111 111111111
Q ss_pred hhhhccccCc------chHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhh
Q 011831 330 FLLTAIPQSV------SNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEG 389 (476)
Q Consensus 330 ~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 389 (476)
.......... ...+......++.+++.+...+ ...++..|..|+++||+.+|+.+...+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 291 GFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTV-AFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHH-HHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 1111111110 1223344555666777777777 779999999999999999999987654
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-28 Score=231.60 Aligned_cols=348 Identities=16% Similarity=0.143 Sum_probs=239.1
Q ss_pred HHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhc-----CCch-hHHHHHHHHHHH
Q 011831 20 INLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINY-----DRPA-VLTIGILCWAFS 93 (476)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-----Grr~-~~~~~~~~~~~~ 93 (476)
+...++..+.........+|.+.++.|.|.+++|++..+... .+..+++|+++||+ |||| ++..+.++.+++
T Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~ 81 (402)
T PRK11902 4 MLLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS 81 (402)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence 344566777777788889999999999999999999777665 58999999999999 8876 788889999888
Q ss_pred HHHHHhh---hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCC
Q 011831 94 TAAVGAS---QHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGV 170 (476)
Q Consensus 94 ~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~ 170 (476)
..+.++. ++++.+++..++.++..+...++..+++.|++|+|||+++.++...+.++|.++++.++..+.+. .
T Consensus 82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~----~ 157 (402)
T PRK11902 82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADR----V 157 (402)
T ss_pred HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc----c
Confidence 8888876 45788888888889999999999999999999999999999999999999999999999999874 1
Q ss_pred CchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHH
Q 011831 171 PGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVL 250 (476)
Q Consensus 171 ~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (476)
.|||..|++.++..++..+.. +..|||+...+++ + + ..++..++.++++|+|.++..++
T Consensus 158 ~gw~~~f~i~a~~~l~~~l~~-~~~~e~~~~~~~~---~-~----------------~~~~~~~~~~~l~~~~~~~~~l~ 216 (402)
T PRK11902 158 LGWGNTYLLMAGLMLAGALTT-LWAPEPEVPARPP---R-S----------------LGEAVVGPLRDFFSRRGAWALLL 216 (402)
T ss_pred cCHHHHHHHHHHHHHHHHHHH-HhcCCCccccccc---c-h----------------hHHHHHHHHHHHHhCcCHHHHHH
Confidence 499999999988876655543 3344443221100 0 0 00122345566788888776655
Q ss_pred HHHhhhhh-hhHHHHHHHHH-HHhCCChhHHHHHHHHHH-hhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhH
Q 011831 251 QGIVGSLP-WTAMVFFTMWF-ELIGFDHSSTAALLSLFA-IGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPF 327 (476)
Q Consensus 251 ~~~~~~~~-~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~ 327 (476)
..++.... .....+.+.++ +++|+++.+.+.+....+ ++.+++.++.+++.||+++|+.. ...........
T Consensus 217 ~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l------~~~~~~~~l~~ 290 (402)
T PRK11902 217 LIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSL------MLFGVLQAVSN 290 (402)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHH
Confidence 54443332 22223444444 459999999999876654 46889999999999999988631 11111111111
Q ss_pred HHhhhhccccCcchHHHHHHHH----HHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHH
Q 011831 328 SWFLLTAIPQSVSNYYTYAVTL----VLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILS 403 (476)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~ 403 (476)
......... .++.+. ..... +..|++.+.... ....++++..|.+ ..+..+...++++.+++.++|.+.
T Consensus 291 l~~~~~~~~-~~~~~~-~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~G~l~ 363 (402)
T PRK11902 291 LGYWVLAVT-PKHLWT-MALAIGIENLCGGMGTAAFVA-LLMALCNRSFSAT----QYALLSALASVGRVYVGPTSGYLV 363 (402)
T ss_pred HHHHHHHhc-CCcHHH-HHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCcHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 122222 22222 234444444444 4566666666644 445555666777776777899999
Q ss_pred hhhh
Q 011831 404 EKMF 407 (476)
Q Consensus 404 ~~~~ 407 (476)
|..+
T Consensus 364 ~~~G 367 (402)
T PRK11902 364 EAYG 367 (402)
T ss_pred HHhC
Confidence 9853
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-28 Score=234.72 Aligned_cols=386 Identities=12% Similarity=0.062 Sum_probs=251.9
Q ss_pred cccccchHHHHHHHHHHHHHHHHHhccchhh-HHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhh-cCCchhHH
Q 011831 7 TRKVLGISLSLILINLAAIMERADENLLPSV-YKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVIN-YDRPAVLT 84 (476)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~~~ 84 (476)
+++.+++++.+..++...+.+.+..+...+. ...+.+++|.+.++.+++.+.+.....+..+++|+++|| +||||++.
T Consensus 6 ~~~~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~ 85 (489)
T PRK10207 6 PMGLLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIV 85 (489)
T ss_pred CcchhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHH
Confidence 3334455666777777778888777766544 456678899999999999999998888899999999999 99999999
Q ss_pred HHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHhhhhhhhhHHHHHHhhhcCCC--cchhhHHHHHhhhhhhhhhHHHHHHH
Q 011831 85 IGILCWAFSTAAVGASQHFLH-VGMWRAVNGFGLAIVIPALQSFIADSYKDG--VRGAGFGLLSLVGTMGGIGGGVLATI 161 (476)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~-l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~lG~~~g~~~~~~ 161 (476)
.+.+++++++++++++++... +++.|+++|+|.|...|...++++|.+|++ +|+++++++..+.++|..+||.++++
T Consensus 86 ~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~ 165 (489)
T PRK10207 86 LGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPV 165 (489)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999876554 558899999999999999999999999887 45789999999999999999999999
Q ss_pred HhhcccCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHh--------------hhcCCccch
Q 011831 162 MAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELV--------------EKGNTSVSS 227 (476)
Q Consensus 162 l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~ 227 (476)
+.++ .|||+.|++.++ +++..++.+...++..++.. .++++++.+..+.. ...+.....
T Consensus 166 l~~~-----~gw~~~F~i~~i-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 238 (489)
T PRK10207 166 IADK-----FGYSVTYNLCGA-GLIIALLVYFACRGMVKDIG-SEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVA 238 (489)
T ss_pred HHHh-----hChHHHHHHHHH-HHHHHHHHHHHcchhhcccC-CCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 9998 899999999765 44444444433332211110 00111111111100 000000000
Q ss_pred h--------------HHHHHHhhhhhccchhHHHHHHH--HHhhhhhhhHH-HHHHHHHHH-h-----CCChhHHHHHHH
Q 011831 228 V--------------WLESWMATKAVIKVPTFQIIVLQ--GIVGSLPWTAM-VFFTMWFEL-I-----GFDHSSTAALLS 284 (476)
Q Consensus 228 ~--------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~-~-----g~s~~~~g~~~~ 284 (476)
. ..+. +..++.+|+|.+....+. ....+..+... +.++.+.++ . |+.. ....+.+
T Consensus 239 ~~~~~~~~~i~~~~f~~~~-~~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i-~~~~~~~ 316 (489)
T PRK10207 239 NLVLIVLSIVVTIIFFREA-FKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSI-NPVSFQA 316 (489)
T ss_pred HHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEE-CHHHHHh
Confidence 0 0000 111234555655543322 33333344444 556777764 2 2221 2233444
Q ss_pred HHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhh-----hhccccCcchHHHHHHHHHHHHHHHHhh
Q 011831 285 LFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFL-----LTAIPQSVSNYYTYAVTLVLMGLTISWN 359 (476)
Q Consensus 285 ~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 359 (476)
...+..++..++.+++.||+++|+.......-...+.++........ .........+.+......++.|++....
T Consensus 317 ~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~ 396 (489)
T PRK10207 317 LNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFI 396 (489)
T ss_pred HhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHH
Confidence 45566667777788999999988621100111112222211111100 1111111222333557778889999888
Q ss_pred hcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHH
Q 011831 360 ATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGIL 402 (476)
Q Consensus 360 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l 402 (476)
.+ ...+++.+..|++.+|.++|+.+...++|+.++..+....
T Consensus 397 ~~-~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 397 SA-LGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred hH-HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88 7788888999999999999999999999888887777655
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-28 Score=216.68 Aligned_cols=357 Identities=17% Similarity=0.163 Sum_probs=275.6
Q ss_pred hHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHH
Q 011831 13 ISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAF 92 (476)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~ 92 (476)
....+..+....++.++......+.+|.+++.++++..|.+++...++.++.+.+++.|++.+|+|+|+.++.++.++++
T Consensus 11 ~~~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~av 90 (422)
T COG0738 11 VKLAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAV 90 (422)
T ss_pred ceeHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44556666777788888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH---hhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcc---
Q 011831 93 STAAVG---ASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQ--- 166 (476)
Q Consensus 93 ~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~--- 166 (476)
++.+.. -..++..++++-++.|.|.+...++.+++++...|+++-.+.+++.+..+++|.+++|++++.+..+.
T Consensus 91 g~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~ 170 (422)
T COG0738 91 GAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVAL 170 (422)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhh
Confidence 999984 56788999999999999999999999999999999999999999999999999999999999988730
Q ss_pred -----------cCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHh
Q 011831 167 -----------FWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMA 235 (476)
Q Consensus 167 -----------~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (476)
......||++|.+.+...+++.+...... -|..+....++.+ + ++ ..
T Consensus 171 ~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k-~p~~~~~~~~~~~----------------~---~~--~~ 228 (422)
T COG0738 171 TMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSK-LPDLQVAAPSLGA----------------S---GS--AG 228 (422)
T ss_pred ccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc-CCcCCcccccccc----------------c---cc--ch
Confidence 01123588999988887666655554432 1221111110000 0 00 03
Q ss_pred hhhhccchhHHHHHHHHHhhhhhhhHH-HHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcc
Q 011831 236 TKAVIKVPTFQIIVLQGIVGSLPWTAM-VFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGR 313 (476)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~ 313 (476)
..+++++|.++...+..++..+..... +|++.|+.+ .|.+..++....+....+.++|++++.++..|+...|..
T Consensus 229 ~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~L--- 305 (422)
T COG0738 229 LSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYL--- 305 (422)
T ss_pred HHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH---
Confidence 445788899888888887776665444 899999998 899999999999999999999999999999999877631
Q ss_pred hhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhh
Q 011831 314 VMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSS 393 (476)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~ 393 (476)
.+....+...+.... ..++ .......++.|++++..+| ...+...+..| ++-..+ |....+.-+|++
T Consensus 306 ----af~a~~~ill~~~~~----l~~g--~v~~~~l~~ig~F~simfP-TIfslal~~l~-~~ts~~-s~~l~maivGGA 372 (422)
T COG0738 306 ----AFYALIAILLLLAVA----LIGG--VVALYALFLIGLFNSIMFP-TIFSLALKNLG-EHTSVG-SGLLVMAIVGGA 372 (422)
T ss_pred ----HHHHHHHHHHHHHHH----HhcC--hHHHHHHHHHHHHhHHHHH-HHHHHHHhccC-cccccc-ceeeeeheecch
Confidence 111112111111111 1122 2234566778888898888 78888888888 444444 444466688999
Q ss_pred hhhHHHHHHHhhhh
Q 011831 394 FAAPLVGILSEKMF 407 (476)
Q Consensus 394 ~~~~~~g~l~~~~~ 407 (476)
+-|++.|++.|+.+
T Consensus 373 iiP~l~G~i~d~~g 386 (422)
T COG0738 373 IIPPLQGVIADMFG 386 (422)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999999964
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-27 Score=259.47 Aligned_cols=345 Identities=15% Similarity=0.079 Sum_probs=243.1
Q ss_pred ccchhhHHHHHHhcCCCCC--chhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHH---hhhhHHHH
Q 011831 32 NLLPSVYKEVSEAFNAGPS--DLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVG---ASQHFLHV 106 (476)
Q Consensus 32 ~~~~~~~~~i~~~~~~s~~--~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~---~~~~~~~l 106 (476)
.....+.+.+..+++.+.+ ..+++.+++.+++.++++++|+++||+|||++++.+.++..+..++.. .+++++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 106 (1146)
T PRK08633 27 GHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLA 106 (1146)
T ss_pred HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 3445555667677776544 468999999999999999999999999999999999877666665544 35789999
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhccc----CCCCchhHHHHHHHH
Q 011831 107 GMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQF----WGVPGWRCAFILMAT 182 (476)
Q Consensus 107 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~----~~~~~wr~~f~i~~~ 182 (476)
++.|+++|++.+...++..++++|++|+++|++++++.+.+.++|.++|+.+++++.+... ....+|++.+.+..+
T Consensus 107 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 186 (1146)
T PRK08633 107 FAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLL 186 (1146)
T ss_pred HHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999876300 001245555555444
Q ss_pred HHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhhh-hhH
Q 011831 183 LSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLP-WTA 261 (476)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 261 (476)
...+..++..+..++.+.......+++ .....++..+.++.+++++.++..++..++.+.. +..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 251 (1146)
T PRK08633 187 AVAVLGLIFAYRLPKVPAAAPEVFDKK---------------KYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLA 251 (1146)
T ss_pred HHHHHHHHHHhcCcCCCCCCccccccc---------------ccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 433333333333344322211110000 0001123344556677788777666555444443 344
Q ss_pred HHHHHHHHHH-hCCChh-HHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCc
Q 011831 262 MVFFTMWFEL-IGFDHS-STAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSV 339 (476)
Q Consensus 262 ~~~~~~~~~~-~g~s~~-~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (476)
..++|.|+++ +|++.. +.+++.+...++.+++.++.+++.||+++++.. ........+. .+.+. ...
T Consensus 252 ~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~------~~~~~~~~~~--~~~~~---~~~ 320 (1146)
T PRK08633 252 QANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLV------PLGALGLALS--LFLLP---TAP 320 (1146)
T ss_pred HHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccch------hHHHHHHHHH--HHHHH---Hhh
Confidence 4678888876 899998 999999999999999999999999999887632 1111111111 11111 111
Q ss_pred chHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHh
Q 011831 340 SNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSE 404 (476)
Q Consensus 340 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 404 (476)
+ .....+..++.|++.+...+ ...+++.+..|++.||+++|+.+.+.+++..+++.+++.+..
T Consensus 321 ~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 321 S-LASVLVLFFLFGFSAGLFIV-PLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred h-HHHHHHHHHHHHHHHHHhhH-HHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 33345666777887777766 578888999999999999999999999998888877776654
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-27 Score=228.34 Aligned_cols=352 Identities=11% Similarity=0.063 Sum_probs=238.4
Q ss_pred HHHHHHHHHHHHHhccchhhHHHH-HHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHH
Q 011831 18 ILINLAAIMERADENLLPSVYKEV-SEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAA 96 (476)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~ 96 (476)
+.+...+++.......+.+.+|.+ .+++|.++.+.|++.+.+.++..+++++.|+++||+|||+.++.+....+++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~ 84 (396)
T TIGR00882 5 WMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAP 84 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 344455666666666777777654 5678999999999999999999999999999999999999998877766654433
Q ss_pred HH---hh-----hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccC
Q 011831 97 VG---AS-----QHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFW 168 (476)
Q Consensus 97 ~~---~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~ 168 (476)
.. +. +....+++.|++.|++.+...+....+..|.. +++++.++......++|.+++|.+++.+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~---- 158 (396)
T TIGR00882 85 FFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS---- 158 (396)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc----
Confidence 21 11 12334566788899988888888888877753 344567788888899999999999998865
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHH
Q 011831 169 GVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQII 248 (476)
Q Consensus 169 ~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (476)
.+||.+|++.+++.++..++.+...|++++++...+ +.+ .+ .++ +..++.++.+|+|.++..
T Consensus 159 --~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--------~~--~~~----~~~~~~~~~l~~~~~~~~ 220 (396)
T TIGR00882 159 --IDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVAN--ALG--------AN--ASA----FSLKLALELFRQRKFWMF 220 (396)
T ss_pred --cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhhc--ccc--------cc--cCC----CCHHHHHHHHcCCcHHHH
Confidence 599999999988888777666555554432111100 000 00 000 111234567778877666
Q ss_pred HHHHHhhhhhhhHH-HHHHHHHHHh----CCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHh
Q 011831 249 VLQGIVGSLPWTAM-VFFTMWFELI----GFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFM 323 (476)
Q Consensus 249 ~~~~~~~~~~~~~~-~~~~~~~~~~----g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~ 323 (476)
....+.....+... .+.|.|+++. +.+....|...+...+...++.+..+++.||+++|+.. .......
T Consensus 221 ~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l------~~~~~l~ 294 (396)
T TIGR00882 221 VLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNAL------LIAGTIM 294 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhH------HHHHHHH
Confidence 55544444444433 5677777662 55666778888888899999999999999999999732 1111111
Q ss_pred hhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHH-HHhhhhhhhhhhhHHHHHH
Q 011831 324 GIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAF-DRAFEGSFSSFAAPLVGIL 402 (476)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~-~~~~~~~~~~~~~~~~g~l 402 (476)
+... ... ...++.+. .....++.|++...... ....+..+..|++.++++.+. .+....+++.++|.+.|++
T Consensus 295 ~l~~--~~~---~~~~~~~~-~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l 367 (396)
T TIGR00882 295 SVRI--IGS---SFATTALE-VVILKMLHAFEVPFLLV-GCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNM 367 (396)
T ss_pred HHHH--HHH---HhcCChHH-HHHHHHHHHHHHHHHHH-HHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHH
Confidence 1111 111 11222222 33445566666554443 345566777888888887776 5788899999999999999
Q ss_pred Hhhh
Q 011831 403 SEKM 406 (476)
Q Consensus 403 ~~~~ 406 (476)
.|..
T Consensus 368 ~~~~ 371 (396)
T TIGR00882 368 YDSI 371 (396)
T ss_pred HHhc
Confidence 9985
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-28 Score=233.97 Aligned_cols=342 Identities=13% Similarity=0.135 Sum_probs=243.8
Q ss_pred hhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhh----cCCch-hHHHHHHHHHHHHHHHHhhhh------H
Q 011831 35 PSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVIN----YDRPA-VLTIGILCWAFSTAAVGASQH------F 103 (476)
Q Consensus 35 ~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr----~Grr~-~~~~~~~~~~~~~~~~~~~~~------~ 103 (476)
....+.+.+++|+++.++|++.++..+..++..|+.|+++|| +|||| .++.+....+++.+++.+.++ .
T Consensus 20 ~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~ 99 (437)
T TIGR00792 20 TYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKL 99 (437)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHH
Confidence 345577888899999999999999999999999999999998 67755 677888888888888877653 4
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHhhhc-CCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhccc--CCCCchhHHHHHH
Q 011831 104 LHVGMWRAVNGFGLAIVIPALQSFIADSY-KDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQF--WGVPGWRCAFILM 180 (476)
Q Consensus 104 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~--~~~~~wr~~f~i~ 180 (476)
..+++.+++.+++.+...+...++..|.. +++||++..++.+.+..+|..+++.+.+.+..... ....+||+.+.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~ 179 (437)
T TIGR00792 100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVL 179 (437)
T ss_pred HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHH
Confidence 56677888999998888888888999987 56899999999999999998888877766654211 1236899999999
Q ss_pred HHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhhhhh
Q 011831 181 ATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWT 260 (476)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (476)
++++++..++.++..+|++++.... ++ ++ .+..+..+.++++|.++..+...++....+.
T Consensus 180 ~~l~~~~~~~~~~~~~e~~~~~~~~---~~--------------~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 239 (437)
T TIGR00792 180 ALIGVVSLIICFFGTKERYSEIPKN---IE--------------KK---LSLKQIFKALFKNDQLLILCLAYLFYNLAFN 239 (437)
T ss_pred HHHHHHHHHHHHcCCEecCCCCCcc---cc--------------cC---CCHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 9988888777766666543211000 00 00 1123345567788888877666666555444
Q ss_pred HH-HHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccC
Q 011831 261 AM-VFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQS 338 (476)
Q Consensus 261 ~~-~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (476)
.. .+.+.|.+. .+ ++.+.+.+.....++.+++.++.+++.||+++|+.. ..+..+..... +......
T Consensus 240 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~-------~~~~~~~~~~~-~~~~~~~-- 308 (437)
T TIGR00792 240 IKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILF-------AGGILLMVLGY-LIFFFAG-- 308 (437)
T ss_pred HHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH-------HHHHHHHHHHH-HHHHHcc--
Confidence 44 344555554 45 456677777778899999999999999999988632 12222211111 1111111
Q ss_pred cchHHHHHHHHHHHHHHHHhhhcccccchhhcccC-------ccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhhcCC
Q 011831 339 VSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVP-------AKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGYD 410 (476)
Q Consensus 339 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p-------~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 410 (476)
++ .....+..++.|++.+...+ ..+++.+|..| ++.+|+..|+.+...+++..+++.+.|.+.+. .+|+
T Consensus 309 ~~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~-~G~~ 384 (437)
T TIGR00792 309 SN-LPLILVLIILAGFGQNFVTG-LVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI-IGYV 384 (437)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC
Confidence 22 23344555666777766665 56778877754 56689999999999999999999999999998 4553
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.5e-28 Score=222.31 Aligned_cols=348 Identities=12% Similarity=0.072 Sum_probs=241.5
Q ss_pred HhccchhhHHHHHHhcCCCCCc-hhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 011831 30 DENLLPSVYKEVSEAFNAGPSD-LGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGM 108 (476)
Q Consensus 30 ~~~~~~~~~~~i~~~~~~s~~~-~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 108 (476)
-+...+.+.|.+.+|+|++++| .|.+.+++..+++++.++.|+++||+|.|+++..+.+.+++.+++.++++++..+.+
T Consensus 41 ~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i 120 (511)
T TIGR00806 41 FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQL 120 (511)
T ss_pred hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHH--HHHHHH
Q 011831 109 WRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILM--ATLSVL 186 (476)
Q Consensus 109 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~--~~~~~~ 186 (476)
.|++.|++.|... +...++.+|+|+++|+++.++...+..+|.++++++++++. . .|||+-+.+. ...+..
T Consensus 121 ~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s-----~gWr~y~~Ln~Isl~s~~ 193 (511)
T TIGR00806 121 MEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-T-----LGWISYSTLNIISLVFMT 193 (511)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-----cCchhHHHHHHHHHHHHH
Confidence 9999999999999 99999999999999999999999999999999999999954 3 6888765443 222333
Q ss_pred HHHHhheeeccCCCCC-CCccC--------C-CCCCChhhHhhh--cCCccchhHHHHHHhhhhhccchhHHHHHHHHHh
Q 011831 187 IAFLVLVFVVDPRKKA-STFHG--------T-GENFDRDELVEK--GNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIV 254 (476)
Q Consensus 187 ~~~~~~~~~~~~~~~~-~~~~~--------~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (476)
.+++..+++|.+++.. -++++ + +.....+..... .+.......+..+.+++...+++.++...+...+
T Consensus 194 ~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~ 273 (511)
T TIGR00806 194 FSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVF 273 (511)
T ss_pred HHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHH
Confidence 3334444444443311 01100 0 000000000000 0001112335566777788888888887777777
Q ss_pred hhhhhhHH-HHHHHHHHHh-CCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhh
Q 011831 255 GSLPWTAM-VFFTMWFELI-GFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLL 332 (476)
Q Consensus 255 ~~~~~~~~-~~~~~~~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (476)
..+.+... +|....-++. +-++.-.|..-++..+.+.+.++..|++-.++.+-. .+.+.+++.+- . .++
T Consensus 274 a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~----~l~l~v~s~~~----~-gll 344 (511)
T TIGR00806 274 NSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWS----KLLIAVVSAIQ----A-GLV 344 (511)
T ss_pred HhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhH----HHHHHHHHHHH----H-HHh
Confidence 66665555 5655555443 212224566777777888888888888855442211 11122222111 1 122
Q ss_pred hccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhh
Q 011831 333 TAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFA 395 (476)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~ 395 (476)
+.+...++ .++..+..++++..+....+ +...-+++....+..|...|+++.+.-+...+-
T Consensus 345 ~~m~~t~~-Iw~~Y~~yvlf~~~y~flit-ia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtil 405 (511)
T TIGR00806 345 FWMSQSHD-IWVLYVTYVLFRGIYQFLVP-IATFQIASSLSKELCALVFGINTFVATALKTII 405 (511)
T ss_pred hhhhcccc-hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccceEEEEecHHHHHHHHHHhe
Confidence 23333444 44455777777777777777 667777777877778999999887766555433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.9e-27 Score=226.50 Aligned_cols=385 Identities=12% Similarity=0.066 Sum_probs=249.3
Q ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHH-h--cCCCCCchhHHHHHHHHHHHhhhhhhhHhhhh-cCCchhHHHHHHHH
Q 011831 15 LSLILINLAAIMERADENLLPSVYKEVSE-A--FNAGPSDLGYLTFIRNFVQGLSSPLAGVLVIN-YDRPAVLTIGILCW 90 (476)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~--~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~~~~~~~~~ 90 (476)
+.+..+.+..+.+.+..+...+.+|.+.+ + +|.+..+.+++.+.+.+++.++++++|+++|| +|||+++.++.++.
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~ 89 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVL 89 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHH
Confidence 34456666777777777777777776654 4 89999999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCc---chhhHHHHHhhhhhhhhhHHHHHHHHhhccc
Q 011831 91 AFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGV---RGAGFGLLSLVGTMGGIGGGVLATIMAGHQF 167 (476)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~ 167 (476)
+++.++.+++++++.+++.|.+.|++.|...|...++++|++|+++ |+++++++..+.++|.++||.+++++.+.
T Consensus 90 ~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~-- 167 (475)
T TIGR00924 90 MLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAEN-- 167 (475)
T ss_pred HHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHh--
Confidence 9999999999999999999999999999999999999999998764 88899999999999999999999999987
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCc---cCCCCCCChhhH----------hh--hcCCccchh----
Q 011831 168 WGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTF---HGTGENFDRDEL----------VE--KGNTSVSSV---- 228 (476)
Q Consensus 168 ~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----------~~--~~~~~~~~~---- 228 (476)
.+||+.|.+.++..++..+......+..++...++ ++++++...... .. .........
T Consensus 168 ---~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (475)
T TIGR00924 168 ---YGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLM 244 (475)
T ss_pred ---cChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 79999999988655444333332222211111000 000000000000 00 000000000
Q ss_pred ----------HHHHHHh-hhhhccc--hhHHHHHHHHHhhhhhhhHH-HHHHHHHHH-hCCCh----hHHHHHHHHHHhh
Q 011831 229 ----------WLESWMA-TKAVIKV--PTFQIIVLQGIVGSLPWTAM-VFFTMWFEL-IGFDH----SSTAALLSLFAIG 289 (476)
Q Consensus 229 ----------~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~g~s~----~~~g~~~~~~~~~ 289 (476)
.+...++ ....-|+ +.+..+.+.....+..+... +.++.+.++ .+.+. ...+.+.+...+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~ 324 (475)
T TIGR00924 245 TVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFW 324 (475)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHH
Confidence 0000000 0011111 22333333344444444444 446766654 33322 2266777778777
Q ss_pred hhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhh-hHHHhhh--hccc-cCcchHHHHHHHHHHHHHHHHhhhccccc
Q 011831 290 CAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGI-PFSWFLL--TAIP-QSVSNYYTYAVTLVLMGLTISWNATAANG 365 (476)
Q Consensus 290 ~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 365 (476)
-++..++..++..|..||........-...+.++.. .+..... .... ....+.+......++.+++.....+ ...
T Consensus 325 iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p-~~~ 403 (475)
T TIGR00924 325 VVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISP-LGL 403 (475)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhH-HHH
Confidence 777777666555555554110000110111222211 1111111 0111 1122344466778889999988888 889
Q ss_pred chhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhh
Q 011831 366 PMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEK 405 (476)
Q Consensus 366 ~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 405 (476)
+++.+..|++.||+.+|+......+|..+++.+.....+.
T Consensus 404 ~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~ 443 (475)
T TIGR00924 404 SWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP 443 (475)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998888888888887766554
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-29 Score=222.97 Aligned_cols=354 Identities=15% Similarity=0.152 Sum_probs=264.5
Q ss_pred chHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcC---------------------------------------------
Q 011831 12 GISLSLILINLAAIMERADENLLPSVYKEVSEAFN--------------------------------------------- 46 (476)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--------------------------------------------- 46 (476)
.+..++...+.+.+.+.+......|.+|.+..|.+
T Consensus 18 ~r~lilviv~ialllDnmL~~vivPiiP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~ 97 (464)
T KOG3764|consen 18 SRPLILVIVSIALLLDNMLYTVIVPIIPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAE 97 (464)
T ss_pred ccceEEEEEehhhhccCccceeeeccCccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchh
Confidence 34445556667777777777777777776655544
Q ss_pred -----CCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhh
Q 011831 47 -----AGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVI 121 (476)
Q Consensus 47 -----~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 121 (476)
-+.+++|++...+.+.+.+.+++.|.+.||+|+|-.+++|+.++...++++++.++++.+++.|.+||+|.+...
T Consensus 98 ~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ 177 (464)
T KOG3764|consen 98 AISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFAD 177 (464)
T ss_pred ccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHH
Confidence 345689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhcCCCc-chhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhheeeccCCC
Q 011831 122 PALQSFIADSYKDGV-RGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRK 200 (476)
Q Consensus 122 ~~~~~~i~~~~~~~~-r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~ 200 (476)
++..++++|.+|+++ |++++|+.-.+.++|.++||++|+.+.+. .|.+.+|++++++.++-..+.++..+..+.
T Consensus 178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~-----~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~ 252 (464)
T KOG3764|consen 178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF-----AGKSAPFLVLAIVLLLDGALQLLVIEPTEM 252 (464)
T ss_pred hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhh-----cCCcCcHHHHHHHHHHHHHHHHheeCcccc
Confidence 999999999998765 79999999999999999999999999998 999999999999999998888888765444
Q ss_pred CCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhhhhhHH-HHHHHHHHH-hCCChhH
Q 011831 201 KASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAM-VFFTMWFEL-IGFDHSS 278 (476)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~g~s~~~ 278 (476)
+.+.. +...++++++++|..+.............+.. --++.+..+ +..+..+
T Consensus 253 ~~~~~-------------------------~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~ 307 (464)
T KOG3764|consen 253 DPDST-------------------------EQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWE 307 (464)
T ss_pred Ccccc-------------------------ccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcc
Confidence 33211 00123445777787777666555555555544 456666655 6655558
Q ss_pred HHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHh
Q 011831 279 TAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISW 358 (476)
Q Consensus 279 ~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 358 (476)
.|+.+....+...++..+.|.+.||+++.+. +....+++ .........+..++ +.-.++.....+++.+.
T Consensus 308 ~G~~fLp~~~~y~ig~~lfg~la~k~~~~~w-----l~~~~gl~----~~G~~~~~iP~~~~-~~~L~vp~~~l~~~i~~ 377 (464)
T KOG3764|consen 308 VGLAFLPASLSYAIGTNLFGKLADKYPHLRW-----LLSLGGLA----TVGVSSGPIPFATS-IAQLWVPNFGLGFGIGL 377 (464)
T ss_pred eeeeecccccchhccCchHHHHHHhcCchhH-----HHHHHHHH----HHHHHhchhHhhhh-HHHHhhhhHHHHHHHHH
Confidence 9999999999999999999999999996541 22222222 12222223333333 22233444444444443
Q ss_pred hhccccc---chhhcccCcc---chhhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 359 NATAANG---PMFAEVVPAK---HRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 359 ~~~~~~~---~~~~~~~p~~---~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
... ... .+..|.-..+ ..|...++......++.++||.++|.+.+..
T Consensus 378 ~da-sl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~i 430 (464)
T KOG3764|consen 378 ADA-SLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAI 430 (464)
T ss_pred HHH-HHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeeh
Confidence 333 222 2233322223 5689999999999999999999999999985
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=234.85 Aligned_cols=381 Identities=14% Similarity=0.113 Sum_probs=251.9
Q ss_pred HHHHHHHHHHHHHHHHH--hccchhhHHHHHHhcCC---CC----CchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHH
Q 011831 14 SLSLILINLAAIMERAD--ENLLPSVYKEVSEAFNA---GP----SDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLT 84 (476)
Q Consensus 14 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~---s~----~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~ 84 (476)
........+..+..+.+ ....++....+.++... .. .+.+|+.+...++..++++++|+++|++|||+.++
T Consensus 44 ~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~ 123 (513)
T KOG0254|consen 44 ILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLL 123 (513)
T ss_pred HHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 33444445555555554 45566777777764321 22 24489999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhh
Q 011831 85 IGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAG 164 (476)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~ 164 (476)
.+.+++.++.+++++++|+++++++|+++|+|.|......+.+++|..|++.||...+..+....+|..++..++....+
T Consensus 124 ~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~ 203 (513)
T KOG0254|consen 124 LAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSK 203 (513)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999555555543
Q ss_pred cccCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhH---------------
Q 011831 165 HQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVW--------------- 229 (476)
Q Consensus 165 ~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 229 (476)
. ..+||..+.+..+++++..+..++.+++|++..++++.++.+..........+.+.....
T Consensus 204 ~----~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (513)
T KOG0254|consen 204 V----YAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAE 279 (513)
T ss_pred C----CccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhccc
Confidence 1 148999999999999998888666666777665544332222111111110000000000
Q ss_pred -HHHHHhhh-hhccchhHHHHHHHHHhhhhhhhHH-HHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhcc
Q 011831 230 -LESWMATK-AVIKVPTFQIIVLQGIVGSLPWTAM-VFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQ 306 (476)
Q Consensus 230 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~ 306 (476)
+..+++.. +..+++......+..+.+...+... .|.+.+++..|.+... .......++..+++..+...+.||+||
T Consensus 280 ~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gR 358 (513)
T KOG0254|consen 280 GKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGR 358 (513)
T ss_pred ccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 00011111 1222334444445555555544444 6788888887776443 444556677788888888999999999
Q ss_pred ccCCCcchhHhHHHHHhhhhHHHhhhhcccc----C-c-chHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhH
Q 011831 307 AYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQ----S-V-SNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMI 380 (476)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~ 380 (476)
|+.. +....++..+............. . . .........++...+ +....|+.+.+..|.+|.+.|+++
T Consensus 359 r~ll----l~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f--~~g~g~v~w~~~sEifp~~~r~~~ 432 (513)
T KOG0254|consen 359 RKLL----LFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSF--AIGWGPVPWVIVSEIFPLRLRSKG 432 (513)
T ss_pred HHHH----HHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHH--hcccccchhhhhhccCcHhHHhhh
Confidence 9742 22222222222222222222111 1 1 112222222223333 333333567899999999999999
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHhh
Q 011831 381 YAFDRAFEGSFSSFAAPLVGILSEK 405 (476)
Q Consensus 381 ~g~~~~~~~~~~~~~~~~~g~l~~~ 405 (476)
.++...+..+...+-......+.+.
T Consensus 433 ~s~~~~~n~~~~~~v~~~~~~~~~~ 457 (513)
T KOG0254|consen 433 ASLAVAVNWLWNFLISFFFPFITEA 457 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998877555555555554
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-26 Score=219.35 Aligned_cols=352 Identities=13% Similarity=0.064 Sum_probs=243.6
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHH--HHHHHHHHHhhhhhhhH-hhhhcCCchhHHHHHHHH-HH
Q 011831 17 LILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYL--TFIRNFVQGLSSPLAGV-LVINYDRPAVLTIGILCW-AF 92 (476)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~--~s~~~l~~~~~~~~~G~-l~dr~Grr~~~~~~~~~~-~~ 92 (476)
...+...++..+.......+.+|.+.+|.|.|.+++|++ .+...+...+.+|++++ ..||+||||..++.+.+. ..
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~ 82 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA 82 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence 456677788889998999999999999999999999997 46778888888888855 799999999865555332 22
Q ss_pred HHHHHH---hhhh-HHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccC
Q 011831 93 STAAVG---ASQH-FLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFW 168 (476)
Q Consensus 93 ~~~~~~---~~~~-~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~ 168 (476)
.....+ ...+ ..+++..-++.++..+...+...++..|..++++++...+....+..+|.++|+...+++.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~--- 159 (390)
T TIGR02718 83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK--- 159 (390)
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 222222 1222 334455556677788888889999999999888889999999999999999999999999987
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHH
Q 011831 169 GVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQII 248 (476)
Q Consensus 169 ~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (476)
.|||..|++.+++.++..+..++..|+++++.++. ++..++.++.+|+|.++..
T Consensus 160 --~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~l~~~~~~~~ 213 (390)
T TIGR02718 160 --FGQRPAFLLVACVPLASLVCVLWLKDRAVASPEAP------------------------LARRASLFRFFRRPLAWSL 213 (390)
T ss_pred --hCHHHHHHHHHHHHHHHHHHHHHcCCCCcCccccc------------------------hhhHHHHHHHHcCcCHHHH
Confidence 89999999999988776666655554432111000 0011234456777777666
Q ss_pred HHHHHhhhh-hhhHHHHHHHHHHHhCCChhHHHHHHHHHHh-hhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhh
Q 011831 249 VLQGIVGSL-PWTAMVFFTMWFELIGFDHSSTAALLSLFAI-GCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIP 326 (476)
Q Consensus 249 ~~~~~~~~~-~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 326 (476)
....++... ......+.+.|++|.|+++.+.|......++ ..+++.++.|++.||+++|+.. . .+......
T Consensus 214 ~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l------~-~~~~~~~~ 286 (390)
T TIGR02718 214 LALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTF------I-LGVGLAGS 286 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHH------H-HHHHHHHH
Confidence 555555444 3444478889999999999999999887764 6677889999999999998732 1 11111101
Q ss_pred HHHhhhh-cc-ccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCc-cchhhHHHHHHhhhhhhhhhhhHHHHHHH
Q 011831 327 FSWFLLT-AI-PQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPA-KHRTMIYAFDRAFEGSFSSFAAPLVGILS 403 (476)
Q Consensus 327 ~~~~~~~-~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~ 403 (476)
....... .. ..... .........+.++..+...+ ...+...+..++ +.+++.+++.+...++++.++|.+.|.+.
T Consensus 287 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~ 364 (390)
T TIGR02718 287 LALLWFAQAAFWLAPG-IAVAWSCSAFGSLITGITSV-AIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLT 364 (390)
T ss_pred HHHHHHHHHHcccCCc-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 10 01111 11122223333444444444 445555555655 88999999999999999999999999999
Q ss_pred hhh
Q 011831 404 EKM 406 (476)
Q Consensus 404 ~~~ 406 (476)
|..
T Consensus 365 ~~~ 367 (390)
T TIGR02718 365 DRF 367 (390)
T ss_pred HHH
Confidence 985
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=219.61 Aligned_cols=385 Identities=16% Similarity=0.104 Sum_probs=252.9
Q ss_pred cchHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcC--------CCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchh
Q 011831 11 LGISLSLILINLAAIMERADENLLPSVYKEVSEAFN--------AGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAV 82 (476)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--------~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~ 82 (476)
++..+.+.+..++.+.+.+|..+++.+.|.+...|. .++...+.+..+..+|..+++++.|++.||+|||++
T Consensus 37 w~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~v 116 (538)
T KOG0252|consen 37 WKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKV 116 (538)
T ss_pred HHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 445566777788889999999999999998887762 233456788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhH
Q 011831 83 LTIGILCWAFSTAAVGASQ-------HFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGG 155 (476)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g 155 (476)
+...+++..+++++++++. -.+++...|++.|+|.|+-+|.+.++.+|....++||...+.+.+..+.|.+.|
T Consensus 117 YG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG 196 (538)
T KOG0252|consen 117 YGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAG 196 (538)
T ss_pred hhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhc
Confidence 9999999999999888752 256788899999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHhhccc---CC-------CCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccC---------CCCCCChhh
Q 011831 156 GVLATIMAGHQF---WG-------VPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHG---------TGENFDRDE 216 (476)
Q Consensus 156 ~~~~~~l~~~~~---~~-------~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 216 (476)
.+++-.+..... .+ +.=||..|.+.+++++......+..++++++.....++ +..+.+.+.
T Consensus 197 ~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~ 276 (538)
T KOG0252|consen 197 GIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEA 276 (538)
T ss_pred cHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccch
Confidence 888877654311 00 13499999999998877777776666655544111100 000000000
Q ss_pred Hhh-hcCCccchhHHHHHHhhhhhccch---hHHHHHHHHHh-hhhhhhHHHHHHHHHHHhCCChhHHHH--------HH
Q 011831 217 LVE-KGNTSVSSVWLESWMATKAVIKVP---TFQIIVLQGIV-GSLPWTAMVFFTMWFELIGFDHSSTAA--------LL 283 (476)
Q Consensus 217 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~s~~~~g~--------~~ 283 (476)
... +...+.+..+.. .+...+..+ .........+. -...|....+....+++.|+.+.+... ..
T Consensus 277 ~~~~~~~~~~~~~~~~---~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~ 353 (538)
T KOG0252|consen 277 ESTAESDVPPPSNSFG---LFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGN 353 (538)
T ss_pred hhccccCCCCcccccc---hHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHH
Confidence 000 001111111111 111111112 12222222222 222333335667777777766544332 22
Q ss_pred H-HHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcc
Q 011831 284 S-LFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATA 362 (476)
Q Consensus 284 ~-~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 362 (476)
. +...+.++|..+...++|++|||+.. +.+..+..++..+.-.......+ ...+.+...+..+........
T Consensus 354 ~iia~~~~vPGyw~tv~~id~iGRk~iq-------~~GF~~~~i~~~~~~~~y~~~~~-~~Gf~v~y~l~~ff~NFGPn~ 425 (538)
T KOG0252|consen 354 LIIAVCSTVPGYWFTVYFIDIIGRKYIQ-------LMGFFIMTIFFFVIAGPYNQLEN-TIGFVVLYSLTFFFGNFGPNA 425 (538)
T ss_pred HHHHHHccCCceeEEEEEeehhhhHHHH-------HhhHHHHHHHHHHHcCCcccccc-cCceeehHHHHHHHHhcCCCc
Confidence 2 23445556888899999999999742 22222222222221111111111 112233333444444444444
Q ss_pred cccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 363 ANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 363 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
....+.+|.+|.+.|++..|+..+.+..|+.++.....++.++.
T Consensus 426 ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~ 469 (538)
T KOG0252|consen 426 TTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHN 469 (538)
T ss_pred eeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhcc
Confidence 67788899999999999999999999999999999999999854
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=207.94 Aligned_cols=369 Identities=15% Similarity=0.098 Sum_probs=260.2
Q ss_pred cchHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHH
Q 011831 11 LGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCW 90 (476)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~ 90 (476)
+.+|........+...+.+.....+.+.|...+..+.+..+..++......+..+++..+|.++|++|||+.+.+..+..
T Consensus 74 rfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t 153 (528)
T KOG0253|consen 74 RFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVT 153 (528)
T ss_pred cchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHH
Confidence 45677777777777777777777788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCC
Q 011831 91 AFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGV 170 (476)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~ 170 (476)
.+...+.+.++|+..+.+.|.+.|+|.|+ .|...++-.|.-|..+|...+-.. ..+.+|.+....+...+...
T Consensus 154 ~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~----- 226 (528)
T KOG0253|consen 154 GVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSN----- 226 (528)
T ss_pred HHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHh-----
Confidence 99999999999999999999999999999 899899999999999999888777 99999999999999999887
Q ss_pred CchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHh---------------------hhcCCccc---
Q 011831 171 PGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELV---------------------EKGNTSVS--- 226 (476)
Q Consensus 171 ~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~--- 226 (476)
.||||.....+.+..+.+...++.+|+|+....+++++++-...++.. +++...++
T Consensus 227 ~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~ 306 (528)
T KOG0253|consen 227 FGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKS 306 (528)
T ss_pred hhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhh
Confidence 899999999998888888888888888888766553333211111110 00000000
Q ss_pred hhHHHHHHhhh----hhccchhHHHHHHHHHhhhhhhhHHHHHHHHHHH---hCC-----------------ChhHHHHH
Q 011831 227 SVWLESWMATK----AVIKVPTFQIIVLQGIVGSLPWTAMVFFTMWFEL---IGF-----------------DHSSTAAL 282 (476)
Q Consensus 227 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~-----------------s~~~~g~~ 282 (476)
...++...... .-+|+.++....+.+...+..|+.......+.+. .+. +...--.=
T Consensus 307 ~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrd 386 (528)
T KOG0253|consen 307 SAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRD 386 (528)
T ss_pred ccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHH
Confidence 00011111111 2233344444444433333344444333333322 111 11111111
Q ss_pred HHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcc
Q 011831 283 LSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATA 362 (476)
Q Consensus 283 ~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 362 (476)
..+..+....|.++.+++.||+|||+.+ ....++..++...++.. ...+ . ..+..+..-++....+.
T Consensus 387 llitslaefPGlLIt~~iverlGRKkTM-------al~l~~f~iflfll~~c--~~rn--~-~tvllf~arafisg~fq- 453 (528)
T KOG0253|consen 387 LLITSLAEFPGLLITGVIVERLGRKKTM-------ALSLILFGIFLFLLTTC--KTRN--A-YTVLLFTARAFISGAFQ- 453 (528)
T ss_pred HHHHHHhhCCchhHHHHHHHHhcchhHH-------HHHHHHHHHHHHHHHHh--cCcc--h-hHHHHHHHHHHHhchhe-
Confidence 3345788999999999999999999853 11111111111111111 1121 1 22334444445555555
Q ss_pred cccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHH
Q 011831 363 ANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLV 399 (476)
Q Consensus 363 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~ 399 (476)
..+.|..|++|+..|+++.|.+..+..+|+.+.|.++
T Consensus 454 vaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 454 VAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred EEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH
Confidence 6899999999999999999999999999999999998
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=209.86 Aligned_cols=342 Identities=15% Similarity=0.132 Sum_probs=222.0
Q ss_pred CCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHH
Q 011831 48 GPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSF 127 (476)
Q Consensus 48 s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 127 (476)
+....|.+.+.|.+.+.+.++.+|.++||+|||++++++++..++..++.++++|+..+.+.|++.|+..|.. ..+.++
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl-~v~rAi 144 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNL-SVIRAI 144 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch-HHHHHH
Confidence 3345789999999999999999999999999999999999999999999999999977777799999998755 556799
Q ss_pred HhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcc-cCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCcc
Q 011831 128 IADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQ-FWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFH 206 (476)
Q Consensus 128 i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~-~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (476)
++|.+++|+|+++++.++..+++|.++||.+|+++.+.. ..+.+.+-.+-++..++...-.....++.||+-+.+++.
T Consensus 145 isdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~- 223 (451)
T KOG2615|consen 145 ISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKRN- 223 (451)
T ss_pred HHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccchhhc-
Confidence 999999999999999999999999999999999999821 111122222222222222221222333445553333222
Q ss_pred CCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccch-------hHHHHHHHHHhhhhhhhHHHHHHHHH-H-HhCCChh
Q 011831 207 GTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVP-------TFQIIVLQGIVGSLPWTAMVFFTMWF-E-LIGFDHS 277 (476)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~g~s~~ 277 (476)
+| +.+..+...+..+..+..+... ...+|++ .+..+.+..+.....+....+.+..+ . .+|+++.
T Consensus 224 -~~-~~~~~~~~~~~~~~~~~~~~~~----v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~ 297 (451)
T KOG2615|consen 224 -DE-HSTLQEAADDRLALLKFARIFK----VAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSM 297 (451)
T ss_pred -cc-ccchhhhhhhhhhhcchhhhhh----hhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChh
Confidence 11 1111111111111111111111 1122221 11122222223333344444445555 3 3999999
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHH
Q 011831 278 STAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTIS 357 (476)
Q Consensus 278 ~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 357 (476)
+.|.+++..++.+.+.+....+..||.+... .......+.+..+...+ ....... ....+...+..+...
T Consensus 298 ~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~-----~a~l~~~l~~~vP~~ll----ls~~~~~-~~l~~~s~l~sf~~A 367 (451)
T KOG2615|consen 298 QQGKVLSTTGLLMLVIQLALVPILPRYKGNI-----KAVLLFSLLLIVPAFLL----LSLARTP-VVLYLGSTLKSFSTA 367 (451)
T ss_pred hheeeeehhhHHHHHHHHhccccccccccch-----hhHHHHHHHHHHHHHHH----Hhccccc-hhhhHHHHHHHHHHH
Confidence 9999999988888888877777777765221 11222223333332221 1122221 234455555555555
Q ss_pred hhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhhc
Q 011831 358 WNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFG 408 (476)
Q Consensus 358 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~ 408 (476)
...+ ....++....|++.||+++|+..+.+.++.++||.+.|.+..+.-+
T Consensus 368 ~~vt-~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~ 417 (451)
T KOG2615|consen 368 SVVT-CLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQG 417 (451)
T ss_pred HhhH-HHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecC
Confidence 5555 6788888999999999999999999999999999999999887543
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-25 Score=214.31 Aligned_cols=369 Identities=15% Similarity=0.167 Sum_probs=250.4
Q ss_pred HHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHh
Q 011831 20 INLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGA 99 (476)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 99 (476)
+++......+.....+..++.+..|+|- .....|+.+.+.++..++.++.|+++|.+|||++++.+.++..+|+++++.
T Consensus 49 ~~~~~~~~~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at 127 (599)
T PF06609_consen 49 FSLAVIAAYFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT 127 (599)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc
Confidence 3333444445555567788999999994 577899999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHH
Q 011831 100 SQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFIL 179 (476)
Q Consensus 100 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i 179 (476)
++|...++++..+.|+|.|.... ....++|..|.|.|....++.....-.....++.++..+... .+|||.|++
T Consensus 128 A~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~-----~~WRw~~~~ 201 (599)
T PF06609_consen 128 AQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAH-----SGWRWIFYI 201 (599)
T ss_pred CCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccC-----CCcchHHHH
Confidence 99999999999999999776654 466699999999999888887777666666788888777665 799999999
Q ss_pred HHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHh---------------------hh--cCCccchh--------
Q 011831 180 MATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELV---------------------EK--GNTSVSSV-------- 228 (476)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~--~~~~~~~~-------- 228 (476)
..+...+..++.+++...|++...+.++...+....+.+ .. .+..+...
T Consensus 202 ~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~ 281 (599)
T PF06609_consen 202 FIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGF 281 (599)
T ss_pred HHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHH
Confidence 999877776665554443433221111100000001100 00 00010000
Q ss_pred --------HHHHH---Hh--hhhhccc-hhHHHHHHHHHhhhh-hhhHHHHHHHHHHH-hCCChh---HHHHHHHHHHhh
Q 011831 229 --------WLESW---MA--TKAVIKV-PTFQIIVLQGIVGSL-PWTAMVFFTMWFEL-IGFDHS---STAALLSLFAIG 289 (476)
Q Consensus 229 --------~~~~~---~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~g~s~~---~~g~~~~~~~~~ 289 (476)
|+... ++ ..+++|+ |.+...++..+.... .+....+.|..... ++-|+. ..+......+++
T Consensus 282 ~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg 361 (599)
T PF06609_consen 282 VLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFG 361 (599)
T ss_pred HHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHH
Confidence 11110 11 1246666 556655555444433 44444677777665 665543 567777888888
Q ss_pred hhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhh
Q 011831 290 CAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFA 369 (476)
Q Consensus 290 ~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 369 (476)
..++.++.|.+..+++|-|. ..+++..+...+...+...-+.+.+ . .....++.|++.++... ......+
T Consensus 362 ~~~g~~i~g~l~~~ir~~Kw------~li~~~~~~ta~~Gama~~~~~n~~-~--~i~~~~l~g~giG~~~~-~~~~~~q 431 (599)
T PF06609_consen 362 SCAGAVILGLLFSKIRHIKW------QLIFGSVLMTAFCGAMAAVRPDNKN-A--AIAFLVLAGFGIGGILV-PAIVIAQ 431 (599)
T ss_pred HHHHHHHHHHHHHHccchhH------HHHHHHHHHHHHHHHHHHccCCCcc-h--HHHHHHHHHHhHHHHHH-HHHHeeE
Confidence 88999999999988876542 2223333323222222222222222 2 23556667777777766 4566667
Q ss_pred cccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhh
Q 011831 370 EVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEK 405 (476)
Q Consensus 370 ~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 405 (476)
-..|+++.|++.|+..+++.+|+.+|..+...+..+
T Consensus 432 l~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n 467 (599)
T PF06609_consen 432 LIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTN 467 (599)
T ss_pred eeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 778999999999999999999999999988766543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-25 Score=216.00 Aligned_cols=381 Identities=10% Similarity=0.087 Sum_probs=261.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHH
Q 011831 10 VLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILC 89 (476)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~ 89 (476)
..++|..+..........+.. +.++...|.+++++|+|.++++++.++. .....++++.|++.||+|+|+++.++.++
T Consensus 23 e~~Rw~~lva~~~~~~~~g~~-y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll 100 (591)
T PTZ00207 23 EPRRFALLVLGAFCSICTSFM-YAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTV 100 (591)
T ss_pred ccchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 456676666555544444333 4567788999999999999999998874 44567788899999999999999999999
Q ss_pred HHHHHHHHHhh------hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHh
Q 011831 90 WAFSTAAVGAS------QHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMA 163 (476)
Q Consensus 90 ~~~~~~~~~~~------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~ 163 (476)
+.+++++++++ ++++.+++.|++.|+|.+...+.....+.+|+| ++||++.|+...+.++|.++.+.+...+.
T Consensus 101 ~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~ 179 (591)
T PTZ00207 101 FCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF 179 (591)
T ss_pred HHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997 689999999999999999999999999999995 78999999999999999986555554444
Q ss_pred hcccCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCC---CccCCCCCCChh-------------------------
Q 011831 164 GHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKAS---TFHGTGENFDRD------------------------- 215 (476)
Q Consensus 164 ~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~------------------------- 215 (476)
. .+|+..|++.+++.++..++.+.+.++|+.... +++.++++...+
T Consensus 180 ~------~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~ 253 (591)
T PTZ00207 180 S------DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILI 253 (591)
T ss_pred H------HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHH
Confidence 4 378999999999999888888887777653321 100000000000
Q ss_pred -------------------h---------Hh------h--------------h-cC---------------Cccc----h
Q 011831 216 -------------------E---------LV------E--------------K-GN---------------TSVS----S 227 (476)
Q Consensus 216 -------------------~---------~~------~--------------~-~~---------------~~~~----~ 227 (476)
+ .. . + +. ..+. .
T Consensus 254 ~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (591)
T PTZ00207 254 ILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVET 333 (591)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccc
Confidence 0 00 0 0 00 0000 0
Q ss_pred hHH----HHHHhhhhhccchhHHHHHHHHHhhhhh-hhHHHHHHHHHHHh-CCChhH--HHHHHHHHHhhhhhhhchhhh
Q 011831 228 VWL----ESWMATKAVIKVPTFQIIVLQGIVGSLP-WTAMVFFTMWFELI-GFDHSS--TAALLSLFAIGCAVGSFLGGV 299 (476)
Q Consensus 228 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-g~s~~~--~g~~~~~~~~~~~~~~~~~g~ 299 (476)
+.+ +...++.+.+++..+|.+....++.... ....+.+.++.+.+ |.+..+ ..++.+..++++.+|++..|.
T Consensus 334 ~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~ 413 (591)
T PTZ00207 334 DVDYIAPQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSY 413 (591)
T ss_pred cccCCCCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHH
Confidence 000 0011455667778888888887777664 44446678878877 773322 233778899999999999999
Q ss_pred hhhhhccccCC--CcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccch
Q 011831 300 VADRISQAYPH--SGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHR 377 (476)
Q Consensus 300 l~dr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~ 377 (476)
+.....+|+.. ..|.....+... ......+.....+ . ..+.+..++.|++.|...+ +....+.|++. ++-
T Consensus 414 ~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p--~---~~L~~~~~lvg~~~G~~~~-~~~~i~selFg-k~~ 485 (591)
T PTZ00207 414 FEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLP--K---AALPLPYFIAAFANGFMAA-TIALVTRTIFA-KDP 485 (591)
T ss_pred HHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCC--c---cHhHHHHHHHHHHhhHhHH-HHHHHHHHHhc-cch
Confidence 88333333211 112222222222 1111111222221 1 2245677778888888887 78899999999 999
Q ss_pred hhHHHHHHhhhhhhhhhh-hHHHHHHHhhhh
Q 011831 378 TMIYAFDRAFEGSFSSFA-APLVGILSEKMF 407 (476)
Q Consensus 378 g~~~g~~~~~~~~~~~~~-~~~~g~l~~~~~ 407 (476)
|+-.-+.....-+|..+- -.+.|.++|+-.
T Consensus 486 g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea 516 (591)
T PTZ00207 486 AKHYNFCFLGSVLSAIFLNRLLYGEWYTQQA 516 (591)
T ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888888887744 678899998854
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-32 Score=265.25 Aligned_cols=374 Identities=18% Similarity=0.103 Sum_probs=253.6
Q ss_pred HHHHHHHHHHhccchhhHHHHH--HhcCCCC---------CchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHH
Q 011831 21 NLAAIMERADENLLPSVYKEVS--EAFNAGP---------SDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILC 89 (476)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~i~--~~~~~s~---------~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~ 89 (476)
.++.+..+++....+...+... .+++.+. .+.+++.+...++..+++++.|.++||+|||+.+..+.++
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~ 85 (451)
T PF00083_consen 6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL 85 (451)
T ss_pred HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence 4455778888877776665555 2222222 2367899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh---hHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcc
Q 011831 90 WAFSTAAVGASQ---HFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQ 166 (476)
Q Consensus 90 ~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~ 166 (476)
..+++++.++++ +++.+.++|+++|++.|...+....++.|..|+++|++..++.+.+..+|.+++..++..+....
T Consensus 86 ~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 165 (451)
T PF00083_consen 86 MIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS 165 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999 99999999999999999999999999999999999999999999999999999988887664430
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcC-----CccchhHHH---HHHhhhh
Q 011831 167 FWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGN-----TSVSSVWLE---SWMATKA 238 (476)
Q Consensus 167 ~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~~~~ 238 (476)
+..+||..+.+.++++++..+..++++|+|++...+++.+|++...++.+.++. ++.....++ ....+++
T Consensus 166 --~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (451)
T PF00083_consen 166 --DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRD 243 (451)
T ss_pred --ccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccccccceeeee
Confidence 124699999999999988888888888889988777766655444333211100 000000000 0022344
Q ss_pred hccchh----HHH-HHHHHHhhhhhhhHH-HHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCc
Q 011831 239 VIKVPT----FQI-IVLQGIVGSLPWTAM-VFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSG 312 (476)
Q Consensus 239 ~~~~~~----~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~ 312 (476)
+++++. ... ..+..+.....+... .|.|.++++.|.+.. -.......+...++.++..++.||+|||+...
T Consensus 244 l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i- 320 (451)
T PF00083_consen 244 LFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLI- 320 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccc-
Confidence 455432 111 222222222222333 456777777777765 22333456677778888889999999997532
Q ss_pred chhHhHHHHHhhhhHHHhh---hhccccCc---chHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHh
Q 011831 313 RVMCAQFSAFMGIPFSWFL---LTAIPQSV---SNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRA 386 (476)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~ 386 (476)
.+......+.... .......+ ...... ...+.....+....+..+.+..|.+|++.|+++.|+...
T Consensus 321 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~ 392 (451)
T PF00083_consen 321 ------IGLLLMAICSLILGIIFFLGVSSSSWWSILSIV--FLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYA 392 (451)
T ss_pred ------cccccccccccccccccccccccccccccccce--eeeeccccccccccccccccccccccccccccccccccc
Confidence 1111111111111 11111111 111111 122222222222222567889999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHhhhh
Q 011831 387 FEGSFSSFAAPLVGILSEKMF 407 (476)
Q Consensus 387 ~~~~~~~~~~~~~g~l~~~~~ 407 (476)
++++++.++|.+...+.+..+
T Consensus 393 ~~~i~~~i~~~~~~~~~~~~~ 413 (451)
T PF00083_consen 393 VGRIGGFIIPFLFPYLFNNLG 413 (451)
T ss_pred ccccccccccccccccccccc
Confidence 999999999999888887754
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=222.84 Aligned_cols=342 Identities=14% Similarity=0.080 Sum_probs=230.8
Q ss_pred HHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhh
Q 011831 42 SEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVI 121 (476)
Q Consensus 42 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 121 (476)
.+.++.+.....+..+++.+|..+|++++|+++||+|||++++.++++..++.++.++++|++.+++.|+++|++.++..
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~ 189 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPL 189 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchh
Confidence 35566778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCC
Q 011831 122 PALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKK 201 (476)
Q Consensus 122 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~ 201 (476)
.....+++|++++++|+.+..+ ......+..++++.++++.. +||+.+++..+++++..+..++.+|+|++.
T Consensus 190 ~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-------~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl 261 (521)
T KOG0255|consen 190 TVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-------DWRWLFWIISIPSGLFLLLWFLPPESPRWL 261 (521)
T ss_pred HHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHccCcChHHH
Confidence 9999999999999999999999 77778888888888888874 899999999999988777744445777777
Q ss_pred CCCccCCCCCCChhhHhhhc--CCccchhHHH--HH-----------HhhhhhccchhHHHHHHHHHhhhhhhhHHHH-H
Q 011831 202 ASTFHGTGENFDRDELVEKG--NTSVSSVWLE--SW-----------MATKAVIKVPTFQIIVLQGIVGSLPWTAMVF-F 265 (476)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 265 (476)
..+++.++.....++..+.+ ........+. .. .....+++.+......+...+.+..+....+ +
T Consensus 262 ~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl 341 (521)
T KOG0255|consen 262 LSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGL 341 (521)
T ss_pred HHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 66654433332222221110 0000000000 00 1123455555444444444443333333333 3
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHH
Q 011831 266 TMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTY 345 (476)
Q Consensus 266 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (476)
+....++|.+... .....+.....+....+...|+.|||.. ...+..+..... +........... ...
T Consensus 342 ~~~~~~lg~~~~~---~~~~~~~~~~p~~~~~~~~~~~~gR~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~-~~~ 409 (521)
T KOG0255|consen 342 SLNVSGLGGNIYL---NFTLSGLVELPAYFRNGLLLPEFGRRPP-------LFLSLFLAGIGL-LLFGWLPDDLGG-WLH 409 (521)
T ss_pred hhhhhhcCchHHH---HHHHHHHHHhhHHHHHHHHHHHhCcHHH-------HHHHHHHHHHHH-HHHHHhhccchh-HHH
Confidence 3333445555433 2333344666777777899999988863 222222222222 222222222221 112
Q ss_pred HHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHh
Q 011831 346 AVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSE 404 (476)
Q Consensus 346 ~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 404 (476)
.....+..++.+.... ..+.+..|.+|+..|+.+.+..+....+++.++|.+.-....
T Consensus 410 ~~~~~~~~~~~~~~~~-~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~ 467 (521)
T KOG0255|consen 410 WILPLLGKFFIGSAFN-LIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ 467 (521)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2222222233333334 448899999999999999999999999999999988755544
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-24 Score=207.27 Aligned_cols=375 Identities=13% Similarity=0.055 Sum_probs=224.6
Q ss_pred HHHHHHHHHHHHHHHhccchhhHH-HHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhh-cCCchhHHHHHHHHHHH
Q 011831 16 SLILINLAAIMERADENLLPSVYK-EVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVIN-YDRPAVLTIGILCWAFS 93 (476)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~~~~~~~~~~~~ 93 (476)
.+..++...+.+.+..+.....++ .+.+++|++.++.+++.+.+........+++|+++|| +|||+.+..+.++.+++
T Consensus 22 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig 101 (500)
T PRK09584 22 AFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIG 101 (500)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 455666667777777666655554 5568899999999998888877766777899999999 59999999999999999
Q ss_pred HHHHHhhh-hHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCc--chhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCC
Q 011831 94 TAAVGASQ-HFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGV--RGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGV 170 (476)
Q Consensus 94 ~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~ 170 (476)
..++++++ +.+.+++.|+++|++.|...+...+++.|++|+++ |..++++++.+.++|..+||.+++++.+.
T Consensus 102 ~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~----- 176 (500)
T PRK09584 102 YALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAK----- 176 (500)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 99999874 56667788999999999999999999999997654 45688999999999999999999999987
Q ss_pred CchhHHHHHHHHHHHHHHHHhhe---eeccCCCCCCCccCCCCCCChh-----------hHhhhcCCccchh--------
Q 011831 171 PGWRCAFILMATLSVLIAFLVLV---FVVDPRKKASTFHGTGENFDRD-----------ELVEKGNTSVSSV-------- 228 (476)
Q Consensus 171 ~~wr~~f~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~-------- 228 (476)
.|||+.|++.++..++..+.... .+++..+...+++.+..+.... .....+.+.....
T Consensus 177 ~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (500)
T PRK09584 177 YGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGI 256 (500)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 89999999987654443332222 2222111111000000000000 0000000000000
Q ss_pred HHHHH-H--hhhhhccchhHHHHHHHHHhhhhhhhHHHHHHHHHHH-----h-----CCChhHHHHHHHHHHhhhhhhhc
Q 011831 229 WLESW-M--ATKAVIKVPTFQIIVLQGIVGSLPWTAMVFFTMWFEL-----I-----GFDHSSTAALLSLFAIGCAVGSF 295 (476)
Q Consensus 229 ~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-----g~s~~~~g~~~~~~~~~~~~~~~ 295 (476)
..... . ..++.-++|.+. .+.........+......|.++.. . |+. ...+.+.+...+..++..+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~-i~~~~~~s~n~i~iil~~p 334 (500)
T PRK09584 257 VVIFGKEAFAMKGAARRKMIV-AFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIA-VEPEQYQALNPFWIMIGSP 334 (500)
T ss_pred HHHHHHHHhhcCHHHHHHHHH-HHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceE-ECHHHHHHHhHHHHHHHHH
Confidence 00000 0 011111222222 222222222223333333443321 1 211 2245566667767777777
Q ss_pred hhhhhhhhhccccCCCcchhHhHHHHHh-hhhHHHhhhhccc---cCcchHHHHHHHHHHHHHHHHhhhcccccchhhcc
Q 011831 296 LGGVVADRISQAYPHSGRVMCAQFSAFM-GIPFSWFLLTAIP---QSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEV 371 (476)
Q Consensus 296 ~~g~l~dr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 371 (476)
+.+++-+|.++|..... ....+.++ +..+..+...... ....+.+......++.|++.....| ...+++.+.
T Consensus 335 ~~~~~~~~l~~r~~~~~---~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p-~g~s~~~~~ 410 (500)
T PRK09584 335 ILAAIYNKMGDRLPMPH---KFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISG-LGLAMVAQL 410 (500)
T ss_pred HHHHHHHHhCcCCCcHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhH-HHHHHHHHh
Confidence 77666677666643211 11221222 1111111111110 0111123455677888999888888 889999999
Q ss_pred cCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhh
Q 011831 372 VPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEK 405 (476)
Q Consensus 372 ~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 405 (476)
.|++.||+.+|+.... .++++.+.|.+.+.
T Consensus 411 aP~~~rg~~~g~~~l~----~a~g~~~~g~~~~~ 440 (500)
T PRK09584 411 VPQRLMGFIMGSWFLT----TAGAALIAGYVANL 440 (500)
T ss_pred CcHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 9999999999966544 44555566666553
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-23 Score=202.65 Aligned_cols=361 Identities=12% Similarity=0.097 Sum_probs=236.8
Q ss_pred HHHHHHHHHhccchh-hHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhh----hcCC-chhHHHHHHHHHHHHH
Q 011831 22 LAAIMERADENLLPS-VYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVI----NYDR-PAVLTIGILCWAFSTA 95 (476)
Q Consensus 22 ~~~~~~~~~~~~~~~-~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~d----r~Gr-r~~~~~~~~~~~~~~~ 95 (476)
++.+...+......+ +...+.+.+|+++.++|.+..+..+.-++..|+.|.++| |+|| |+.++.+.+..+++..
T Consensus 13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~ 92 (473)
T PRK10429 13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLF 92 (473)
T ss_pred cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHH
Confidence 333434444444444 445667778999999999999999999999999999999 5699 5577778888887766
Q ss_pred HHHhhh------hHHHHHHHHHHHHhhhhhhhhHHHHHHhhhc-CCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhccc-
Q 011831 96 AVGASQ------HFLHVGMWRAVNGFGLAIVIPALQSFIADSY-KDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQF- 167 (476)
Q Consensus 96 ~~~~~~------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~- 167 (476)
++-..+ .+..+++.-++.+++.....+...+++.|.. +++||.+..++...+.++|..+.+.+...+.+..+
T Consensus 93 llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~ 172 (473)
T PRK10429 93 LLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGG 172 (473)
T ss_pred HHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 654322 1334556667778888888888889999998 68999999999888888887666665554433211
Q ss_pred -CCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHH
Q 011831 168 -WGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQ 246 (476)
Q Consensus 168 -~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (476)
....+|+....+.+++.++..+..++..+|++.......++ +++ .+.++..+.++++|.++
T Consensus 173 ~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~---------------~~~---~~~~~~~~~~~~n~~~~ 234 (473)
T PRK10429 173 GDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAE---------------GSH---LTLKDIVALIYKNDQLS 234 (473)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCcccccccc---------------ccC---CCHHHHHHHHhcCHHHH
Confidence 11246888888888877776666666555542211100000 001 11233445567888888
Q ss_pred HHHHHHHhhhhhhhHH-HHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhh
Q 011831 247 IIVLQGIVGSLPWTAM-VFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGI 325 (476)
Q Consensus 247 ~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~ 325 (476)
.++...+......... .+.+.|.+....++...+.+.....+..+++.++.+++.||+|+|+.. ..+..+..
T Consensus 235 ~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~-------~~~~~~~~ 307 (473)
T PRK10429 235 CLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILW-------AGASIFPV 307 (473)
T ss_pred HHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH-------HHHHHHHH
Confidence 7776666655544444 444544454333555666777777788899999999999999998732 11111111
Q ss_pred hHHHhhhhc-cccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccC-------ccchhhHHHHHHhhhhhhhhhhhH
Q 011831 326 PFSWFLLTA-IPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVP-------AKHRTMIYAFDRAFEGSFSSFAAP 397 (476)
Q Consensus 326 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p-------~~~~g~~~g~~~~~~~~~~~~~~~ 397 (476)
......... .....+ ...+.+..++.|++.+.... ...++++|..+ .+..|...|....+..++.++++.
T Consensus 308 ~~~~~~~~~~~~~~~~-~~~~~i~~~l~g~~~~~~~~-~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~ 385 (473)
T PRK10429 308 LSCGVLLLMGLAAPHN-ALLIVIAGILLNIGTALFWV-LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAF 385 (473)
T ss_pred HHHHHHHHHhccCchh-HHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHH
Confidence 111111111 111222 33344555666777766666 66788888855 444577999999999999999999
Q ss_pred HHHHHHhhhhcCC
Q 011831 398 LVGILSEKMFGYD 410 (476)
Q Consensus 398 ~~g~l~~~~~~~~ 410 (476)
+.|++.+. .+|+
T Consensus 386 i~g~~l~~-~Gy~ 397 (473)
T PRK10429 386 FIGVVLGL-IGYV 397 (473)
T ss_pred HHHHHHHH-cCCC
Confidence 99999998 5564
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-23 Score=194.91 Aligned_cols=351 Identities=17% Similarity=0.196 Sum_probs=250.7
Q ss_pred HHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcC-CchhHHHHHHHHHHHHHHHHh
Q 011831 21 NLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYD-RPAVLTIGILCWAFSTAAVGA 99 (476)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G-rr~~~~~~~~~~~~~~~~~~~ 99 (476)
...+++.....+.+.|.++.+-++.|.|.+|+|.+.++..+...++++++|.++||.+ +||++.+..++.++.......
T Consensus 8 s~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~ 87 (400)
T PF03825_consen 8 SLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF 87 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666667788889999999999999999999999999999999999999986 567888888888887777788
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHH-HHHHhhcccCCCCchhHHHH
Q 011831 100 SQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVL-ATIMAGHQFWGVPGWRCAFI 178 (476)
Q Consensus 100 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~-~~~l~~~~~~~~~~wr~~f~ 178 (476)
.++++.+++.-++..+......|...++..+... ++++-.|-.....++|.+++... +..+.... +..+..+.++
T Consensus 88 ~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~--~~~~~~~~~~ 163 (400)
T PF03825_consen 88 SSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYL--GISGTSLIFY 163 (400)
T ss_pred hccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhh--ccccccHHHH
Confidence 8899988888888888888888999999888874 56667788888888888887554 23333321 1123345666
Q ss_pred HHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhhh
Q 011831 179 LMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLP 258 (476)
Q Consensus 179 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (476)
+.+...++.....+.+++.|+++..+.+. + +...++..+++|+|.+...++..+.....
T Consensus 164 i~~~~~~ll~~~~l~lp~~~~~~~~~~~~-----------------~----~~~~~~~~~llk~~~~~~Fll~~~l~~~~ 222 (400)
T PF03825_consen 164 IAAILSLLLAGFALFLPKTPPKRSAKESV-----------------K----KLLGLDALKLLKNPRFLVFLLAAFLIGIS 222 (400)
T ss_pred HHHHHHHHHHHHHHhCCCCccccccCCCc-----------------c----cccchHHHHHhcCccHHHHHHHHHHHHHH
Confidence 66666655555555554444222111100 0 11112334588888888877777776666
Q ss_pred hhHH-HHHHHHHHHhC-CChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccc
Q 011831 259 WTAM-VFFTMWFELIG-FDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIP 336 (476)
Q Consensus 259 ~~~~-~~~~~~~~~~g-~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (476)
.... +|.+.|+++.| .+....+...++..++.++.-...+++.+|+|.++. +.++.....+=.....
T Consensus 223 ~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~l-----------l~~a~~~~~vR~~l~a 291 (400)
T PF03825_consen 223 HAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWL-----------LLLALVAYAVRWLLYA 291 (400)
T ss_pred HHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-----------HHHHHHHHHHHHHHHH
Confidence 6655 78999999977 788888888888889999999999999999998863 1112222111111111
Q ss_pred cC-cchHHH---HHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhh-hhhhhhhhhHHHHHHHhhhhc
Q 011831 337 QS-VSNYYT---YAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAF-EGSFSSFAAPLVGILSEKMFG 408 (476)
Q Consensus 337 ~~-~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~-~~~~~~~~~~~~g~l~~~~~~ 408 (476)
.. ++.+.. ......+.|..++.... ....++.+..|++.|++++++.+.. ..+|+.+|..++|++.|+.+.
T Consensus 292 ~~~~~~~~~~~~~~l~q~lhG~tf~~~~~-a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~ 367 (400)
T PF03825_consen 292 YFSDPWPFIVALQLLGQLLHGLTFGLFHA-ASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGA 367 (400)
T ss_pred HhcCCcHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 11 121221 12223468888887777 6789999999999999999998876 567888999999999999643
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-23 Score=202.01 Aligned_cols=340 Identities=12% Similarity=0.112 Sum_probs=232.0
Q ss_pred hhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhh----cCCch-hHHHHHHHHHHHHHHHHhhhh------H
Q 011831 35 PSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVIN----YDRPA-VLTIGILCWAFSTAAVGASQH------F 103 (476)
Q Consensus 35 ~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr----~Grr~-~~~~~~~~~~~~~~~~~~~~~------~ 103 (476)
..+...+.+++|+++.++|.+.++..+..++..|+.|+++|| +|||| .++.+.+..++...+....++ +
T Consensus 30 ~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~ 109 (444)
T PRK09669 30 LFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKI 109 (444)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHH
Confidence 445677888899999999999999999999999999999998 77754 666777777777765554432 4
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHhhhc-CCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhccc--CCCCchhHHHHHH
Q 011831 104 LHVGMWRAVNGFGLAIVIPALQSFIADSY-KDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQF--WGVPGWRCAFILM 180 (476)
Q Consensus 104 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~--~~~~~wr~~f~i~ 180 (476)
..+++..++.+.+.......-.++.+|+. +++||++..++......+|..+++.+...+..... ....+|+..+.+.
T Consensus 110 ~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~ 189 (444)
T PRK09669 110 IYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVM 189 (444)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence 55666667777777777777789999998 56889999999999999998888876655544311 1135899999998
Q ss_pred HHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhhhhh
Q 011831 181 ATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWT 260 (476)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (476)
++++++..+..++..+|++...++ + + ++.++..+..+|+|.++..+...++......
T Consensus 190 ~ii~~v~~~~~~~~~~e~~~~~~~-----~---------------~---~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~ 246 (444)
T PRK09669 190 GLLGVVLFFCCFFMTKERYTPEVD-----N---------------S---SSVWKDLKLLLGNSQWRIMFIFNVVLLTAVV 246 (444)
T ss_pred HHHHHHHHHHHhCCeEEecCCCCc-----C---------------C---CCHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence 888877776666665553221100 0 0 1123456667888988887766655544443
Q ss_pred HHHHHHHHH-HH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccC
Q 011831 261 AMVFFTMWF-EL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQS 338 (476)
Q Consensus 261 ~~~~~~~~~-~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (476)
...-...|+ +. .+ ++...+.+.....+..+++.++.+++.||+|+|+.. ..+........ ......+ .
T Consensus 247 ~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~-------~~~~~~~~~~~-~~~~~~~-~ 316 (444)
T PRK09669 247 TRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAF-------KWTIVAFVILS-ALIFFIP-P 316 (444)
T ss_pred HHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH-------HHHHHHHHHHH-HHHHHhC-c
Confidence 332233333 33 33 233344455556677888889999999999988732 11111111111 1111122 2
Q ss_pred cchHHHHHHHHHHHHHHHHhhhcccccchhhcccC-------ccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhhcCC
Q 011831 339 VSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVP-------AKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGYD 410 (476)
Q Consensus 339 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p-------~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 410 (476)
++ ...+.+..++.|++.+...+ ..+++++|..+ .+..|...|..+.+..++.++++.+.|.+.+. .+|+
T Consensus 317 ~~-~~~~~~~~~i~g~~~~~~~~-~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~-~Gy~ 392 (444)
T PRK09669 317 SN-VWLIFALNILFNFIQNLTTP-LQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW-VDYV 392 (444)
T ss_pred ch-HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC
Confidence 22 33345556678888877776 77888988875 33456788999999999999999999999998 5664
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-24 Score=207.24 Aligned_cols=372 Identities=12% Similarity=-0.006 Sum_probs=242.9
Q ss_pred hHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcC-----CchhHHHHH
Q 011831 13 ISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYD-----RPAVLTIGI 87 (476)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G-----rr~~~~~~~ 87 (476)
....+.++...++..+..........+.+.+++|+++++++...+...+...+-.+ +|+++||++ ||+.++++.
T Consensus 24 ~~~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~ 102 (468)
T TIGR00788 24 PRVVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSG 102 (468)
T ss_pred cchHHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHH
Confidence 33445566666777777744445666788888999999999999999999998555 999999998 777888887
Q ss_pred HHHH-HHHHHHHhhhhHHHHH-HHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHH---HhhhhhhhhhHHHHHHHH
Q 011831 88 LCWA-FSTAAVGASQHFLHVG-MWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLL---SLVGTMGGIGGGVLATIM 162 (476)
Q Consensus 88 ~~~~-~~~~~~~~~~~~~~l~-~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~---~~~~~lG~~~g~~~~~~l 162 (476)
++.. +.....+..++..... +..++.+++.+...++..+++.|..+ |++....+.. ....++|.++++.+++.+
T Consensus 103 ~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l 181 (468)
T TIGR00788 103 LLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPL 181 (468)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHH
Confidence 7763 4444444445544444 48899999999999999999999997 5555443333 344458999999999999
Q ss_pred hhcccCCCCchhHHHHHHHHHHHHHHHHhheeeccCC-CCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhcc
Q 011831 163 AGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPR-KKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIK 241 (476)
Q Consensus 163 ~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (476)
.+. .+||..|++.+++.++..+..++. +|++ ....+.++++.... .. .........++..++.+..++
T Consensus 182 ~~~-----~~~~~~f~~~a~l~ll~~~~~~~~-~E~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~l~~~l~ 250 (468)
T TIGR00788 182 LDK-----TLTRILFLITAALLLLQLFVSNLS-KERRAFVRPRIGTYLEMNM-AL----LTLGVLANVKVQILGLRGAIQ 250 (468)
T ss_pred HHh-----cCcchHHHHHHHHHHHHHHHHHhc-ccccccccccccccchhhh-hh----hhhhHHHHHHHHHHHHHHHHh
Confidence 987 899999999988887774444444 4432 11111000000000 00 000000011222334444566
Q ss_pred chhHHHHHHHHHh-hhhhhhHH-H-HHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhH
Q 011831 242 VPTFQIIVLQGIV-GSLPWTAM-V-FFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQ 318 (476)
Q Consensus 242 ~~~~~~~~~~~~~-~~~~~~~~-~-~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~ 318 (476)
+|.++..++..++ .....+.. . ++ ...+..|+++.+.|......+++.+++..+.+++.+|++.|+. ..
T Consensus 251 ~~~i~~~l~fifl~~~~~~~~~~~~f~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~-------l~ 322 (468)
T TIGR00788 251 LLEIAKPLIFIFLSYANLPGASGSVFC-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLL-------FG 322 (468)
T ss_pred cHHHHHHHHHHHHHHhhcCCCCceeEE-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHH-------HH
Confidence 7777665444444 21111111 1 11 1113489999999999999999999999999999888887762 11
Q ss_pred HHHHhhhhHHHhhhhcc---c--c-CcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhh
Q 011831 319 FSAFMGIPFSWFLLTAI---P--Q-SVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFS 392 (476)
Q Consensus 319 ~~~~~~~~~~~~~~~~~---~--~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~ 392 (476)
.+.++............ . . .++ .........+.+++.+.... ....++.+..|++.+|+.+++.+.+.+++.
T Consensus 323 ~~~~l~~~~~~~~~~l~~~~~~~~gi~~-~~~~~~~~~l~~~~~g~~~~-~~~~~~~~~~p~~~egt~~al~~s~~~lg~ 400 (468)
T TIGR00788 323 VTTLLYTLSSLFDLILVKRWNLAFGISD-EVFVLGDSIIAEVLAQLKFM-PFLVLLARLCPSGCESSVFALLASILHLGS 400 (468)
T ss_pred HHHHHHHHHHhCceeeeeccccccCCCC-eeeeeehhHHHHHHHHHHHc-cHHHHHHHhCCCCceehHHHHHHHHHHHHH
Confidence 11221111111100000 0 0 011 12233445566666666666 568999999999999999999999999999
Q ss_pred hhhhHHHHHHHhhhh
Q 011831 393 SFAAPLVGILSEKMF 407 (476)
Q Consensus 393 ~~~~~~~g~l~~~~~ 407 (476)
.+++.++|.+.+..+
T Consensus 401 ~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 401 SVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999999865
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-22 Score=190.08 Aligned_cols=375 Identities=11% Similarity=0.032 Sum_probs=244.6
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhh----hcCCchhHHH-HHHHHHHH
Q 011831 19 LINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVI----NYDRPAVLTI-GILCWAFS 93 (476)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~d----r~Grr~~~~~-~~~~~~~~ 93 (476)
.++...+...+......+.++.+.+++|.+..+.+++..+..+...+.+|+.|+++| |+||||.++. +.+...++
T Consensus 8 ~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~ 87 (477)
T TIGR01301 8 RVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFA 87 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHH
Confidence 334444444555666677777788999999999999999999999999999999999 5999998776 46667777
Q ss_pred HHHHHhhhhHH-----------------HHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcc--hhhHHHHHhhhhhhhhh
Q 011831 94 TAAVGASQHFL-----------------HVGMWRAVNGFGLAIVIPALQSFIADSYKDGVR--GAGFGLLSLVGTMGGIG 154 (476)
Q Consensus 94 ~~~~~~~~~~~-----------------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~lG~~~ 154 (476)
..+.+++++++ .++++-.+..++.....+...++++|.+|+++| +.+.++.+...++|.++
T Consensus 88 l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~il 167 (477)
T TIGR01301 88 VILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVL 167 (477)
T ss_pred HHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 77887876643 223333344557788888889999999998865 68999999999999999
Q ss_pred HHHHHHHHh--hccc--------CCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCc
Q 011831 155 GGVLATIMA--GHQF--------WGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTS 224 (476)
Q Consensus 155 g~~~~~~l~--~~~~--------~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (476)
|+.+++... +... ....+.|..|++.++..++..++..+..+|.+....++.+++ +.+ +.++..
T Consensus 168 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~-~~~-----~~~~~~ 241 (477)
T TIGR01301 168 GYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS-EAA-----PPSKHG 241 (477)
T ss_pred HHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh-hcc-----cccccc
Confidence 999998762 2100 001277999999999888888888887777543221111000 000 000111
Q ss_pred cchhHHHHHHhhhhhccchhHHHHHHHHHhhhhhhhHH-HHHHHHHHH--hCCChh------HH---H-HHHHHHHhhhh
Q 011831 225 VSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAM-VFFTMWFEL--IGFDHS------ST---A-ALLSLFAIGCA 291 (476)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~g~s~~------~~---g-~~~~~~~~~~~ 291 (476)
.+...++..+..+.+ .|..+.+++..++.+..+..+ .|.+.|+.+ ++-++. +. | +......+...
T Consensus 242 ~~~~~~~i~~~~~~m--P~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~ 319 (477)
T TIGR01301 242 EEAFFGELFGAFKYL--PRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLG 319 (477)
T ss_pred hhhhHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 112233444444333 366777887888877765555 677777753 543321 11 2 22334455555
Q ss_pred hhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhh-hcc-c--------------cCcchHHHHHHHHHHHHHH
Q 011831 292 VGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLL-TAI-P--------------QSVSNYYTYAVTLVLMGLT 355 (476)
Q Consensus 292 ~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~--------------~~~~~~~~~~~~~~~~g~~ 355 (476)
+.+++..++.+|+|+|+. .-..+.++......... ... . ..........+.+...|+.
T Consensus 320 i~s~~l~~l~~~~g~~k~------~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~ 393 (477)
T TIGR01301 320 ITSIGMEKLCRGWGAGKR------LWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIP 393 (477)
T ss_pred HHHHHHHHHHHHhccchh------HHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHH
Confidence 666777888888885432 11111111111111111 111 0 0001124455667778888
Q ss_pred HHhhhcccccchhhcccCc--cchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhhc
Q 011831 356 ISWNATAANGPMFAEVVPA--KHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFG 408 (476)
Q Consensus 356 ~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~ 408 (476)
.+.... +.++++++..|+ +..|..+|+.|.+..+...+.....|.+.+..++
T Consensus 394 ~A~~~s-iPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~ 447 (477)
T TIGR01301 394 LAITYS-IPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG 447 (477)
T ss_pred HHHHHH-HhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 887777 779999999984 4569999999999999999999988887776554
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-25 Score=188.54 Aligned_cols=366 Identities=15% Similarity=0.128 Sum_probs=252.2
Q ss_pred cchHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhh-cCCchhHHHHHHH
Q 011831 11 LGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVIN-YDRPAVLTIGILC 89 (476)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~~~~~~~~ 89 (476)
.++...+...|+..|-+++.....+....+++.|.+++.++..++.+.|.+...+...++|++.|| +|.|..-++-+..
T Consensus 40 ~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~f 119 (459)
T KOG4686|consen 40 GHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIF 119 (459)
T ss_pred hhHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHH
Confidence 345666777777778888888888888899999999999999999999999999999999999996 6888866666666
Q ss_pred HHHHHHHHHh---hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcc
Q 011831 90 WAFSTAAVGA---SQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQ 166 (476)
Q Consensus 90 ~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~ 166 (476)
..++.++++. .+.+|.+..+|++.|+|.-...++-++++.-|+..||.+.++|+.....-+|+.+--.+.+++.+..
T Consensus 120 v~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~ 199 (459)
T KOG4686|consen 120 VFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTM 199 (459)
T ss_pred HHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHH
Confidence 6777777664 6899999999999999988888999999999999999999999999999999987777777776541
Q ss_pred c--CCCCch--hHHHHHHHHHHHHHHHHhhe---eeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhh
Q 011831 167 F--WGVPGW--RCAFILMATLSVLIAFLVLV---FVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAV 239 (476)
Q Consensus 167 ~--~~~~~w--r~~f~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (476)
+ .+..+- -...+..+...+...+.... +..+..+..-+. |+... .++ .+ ..+. .-
T Consensus 200 ~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~---e~g~~-------Ge~---pk----Ltdv-~~ 261 (459)
T KOG4686|consen 200 GRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHL---EEGFL-------GEE---PK----LTDV-NT 261 (459)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh---hcCcc-------cCC---cc----cccc-cc
Confidence 1 000110 11112222222222222221 111111111000 00000 000 00 0000 01
Q ss_pred ccchhHHHHHHHHHhhhhhh-hHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHh
Q 011831 240 IKVPTFQIIVLQGIVGSLPW-TAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCA 317 (476)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~ 317 (476)
+ .|.+|.+.+..+..+..+ -....-|.++++ +|+|+..++.+.+.......+.+++.|.++||.|++... .
T Consensus 262 f-~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~w------v 334 (459)
T KOG4686|consen 262 F-YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWW------V 334 (459)
T ss_pred c-CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehh------H
Confidence 1 255666655555544443 333567888877 999999999999999999999999999999999998531 1
Q ss_pred HHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhH
Q 011831 318 QFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAP 397 (476)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~ 397 (476)
..+.+..+..- ..+.....+ -...+.+.|+....... ..+.+++.+.|.+..|++.|.++.+.|+|-++.|.
T Consensus 335 ~~a~~~tl~~H--~~l~Ft~ls-----Py~~m~~lGLsysllAc-slWP~va~~vpE~qLGTaygf~qsIqNLgla~i~I 406 (459)
T KOG4686|consen 335 ASACILTLLGH--SGLFFTFLS-----PYTSMTFLGLSYSLLAC-SLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPI 406 (459)
T ss_pred HHHHHHHHHHh--hhHHhhhcc-----HHHHHHHHhhhHHHHHH-HHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhh
Confidence 11111111111 111111111 12455567777666555 57888999999999999999999999999999999
Q ss_pred HHHHHHhhhhcC
Q 011831 398 LVGILSEKMFGY 409 (476)
Q Consensus 398 ~~g~l~~~~~~~ 409 (476)
+.|.+.|..++|
T Consensus 407 iag~i~d~~g~y 418 (459)
T KOG4686|consen 407 IAGFIADGDGSY 418 (459)
T ss_pred hhheeecCCCch
Confidence 999999998776
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-21 Score=185.97 Aligned_cols=340 Identities=16% Similarity=0.195 Sum_probs=248.6
Q ss_pred hhHHHHHHHHHHHhhhhhhhHhhhhcCCch-hHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 011831 52 LGYLTFIRNFVQGLSSPLAGVLVINYDRPA-VLTIGILCWAFSTAAVGAS--QHFLHVGMWRAVNGFGLAIVIPALQSFI 128 (476)
Q Consensus 52 ~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~-~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i 128 (476)
.++..++..+..++..|+.|.++|+-|+|| .+.+...+..+.+.+..+. ++++...+.-++.-++.+.......+++
T Consensus 72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~L 151 (477)
T PF11700_consen 72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYL 151 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457788889999999999999999999887 4555556666677776664 3344455556666678888888999999
Q ss_pred hhhcCCCcc--------------------------hhhHHHHHhhhhhhhhhHHHHHHHHhhcccC---CCCchhHHHHH
Q 011831 129 ADSYKDGVR--------------------------GAGFGLLSLVGTMGGIGGGVLATIMAGHQFW---GVPGWRCAFIL 179 (476)
Q Consensus 129 ~~~~~~~~r--------------------------~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~---~~~~wr~~f~i 179 (476)
.|..+++++ ++..+.-.....+|.++.-.+.-.+...... ...+-|..+.+
T Consensus 152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~ 231 (477)
T PF11700_consen 152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLI 231 (477)
T ss_pred HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHH
Confidence 999999988 9999999999999999888887776543221 13456999999
Q ss_pred HHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhh-hh
Q 011831 180 MATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGS-LP 258 (476)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 258 (476)
.++.-++..+..++..|+++.....+ ......+..+++.++..++..|.|.....++..++.. ..
T Consensus 232 ~a~ww~vfsiP~~~~~~~~~~~~~~~--------------~~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~ 297 (477)
T PF11700_consen 232 VALWWLVFSIPLFLWLPDRPGPRPLP--------------SGSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGV 297 (477)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCC--------------cchhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 99998888888888887766532111 0111123445677777777777787777666655544 44
Q ss_pred hhHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHH-Hhhhhccc
Q 011831 259 WTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFS-WFLLTAIP 336 (476)
Q Consensus 259 ~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 336 (476)
.+...+...|.++ +|++..+...+.....+.+++|+++.|++.||+|.|... .+..........+.. .+.+....
T Consensus 298 ~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~---~l~~~l~~~~~i~~~g~~G~~~~~ 374 (477)
T PF11700_consen 298 NTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKR---TLLISLILWIIIPLYGLFGFWPSF 374 (477)
T ss_pred HHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH---HHHHHHHHHHHHHHHHHHHhhhcc
Confidence 5555778888875 999999999999999999999999999999999998321 111111111111111 11111111
Q ss_pred cCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhhcC
Q 011831 337 QSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGY 409 (476)
Q Consensus 337 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~ 409 (476)
......+.+.+..++.|+..|..++ ...++.+|+.|+++.+.-+|++...+...+.+||.+.|.+.+.+++.
T Consensus 375 ~g~~~~~~f~~~a~~~G~~~G~~qs-~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~ 446 (477)
T PF11700_consen 375 FGLKSPWEFWVLAVLIGLFMGGIQS-ASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQ 446 (477)
T ss_pred cCcccHHHHHHHHHHHHHHhhhHHH-HHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 1122234466777889999999888 88999999999999999999999999999999999999999998653
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.7e-22 Score=192.32 Aligned_cols=353 Identities=11% Similarity=0.046 Sum_probs=218.6
Q ss_pred HHHHHHHHHHHHhccch-hhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhc----CCch-hHHHHHHHHHH
Q 011831 19 LINLAAIMERADENLLP-SVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINY----DRPA-VLTIGILCWAF 92 (476)
Q Consensus 19 ~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~----Grr~-~~~~~~~~~~~ 92 (476)
.-.++.+.......... ...+.+.+++|++..++|.+.+...+..++..++.|+++||. |||| .+..+.+...+
T Consensus 12 ~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~ 91 (448)
T PRK09848 12 GYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMI 91 (448)
T ss_pred hhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHH
Confidence 33344444444444433 344677777899999999999999999999999999999996 7776 44566555554
Q ss_pred HHHHHH-h----hh--hHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcC-CCcchhhHHHHHhhhh-----hhhhhHHHHH
Q 011831 93 STAAVG-A----SQ--HFLHVGMWRAVNGFGLAIVIPALQSFIADSYK-DGVRGAGFGLLSLVGT-----MGGIGGGVLA 159 (476)
Q Consensus 93 ~~~~~~-~----~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~-----lG~~~g~~~~ 159 (476)
...+.. . ++ ....+++..++.+++.+...+...++..+..+ +++|.+..++-..+.+ ++..++|.++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~ 171 (448)
T PRK09848 92 FSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIK 171 (448)
T ss_pred HHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444432 1 11 22334445567788888888877788777764 4678888777665444 4445555555
Q ss_pred HHHhhcccCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhh
Q 011831 160 TIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAV 239 (476)
Q Consensus 160 ~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (476)
...... ...+|.....+.++++++..++.+...||+...+.++ ....+..+.+
T Consensus 172 ~~~g~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~~------------------------~~~~~~~~~l 224 (448)
T PRK09848 172 NSSPEE---MVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQ------------------------PSLKISLQTL 224 (448)
T ss_pred HhCCCc---hhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCccC------------------------CCHHHHHHHH
Confidence 432110 0012222223334444444444444344432111000 1123345668
Q ss_pred ccchhHHHHHHHHHhhhhhhhHH-HHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHh
Q 011831 240 IKVPTFQIIVLQGIVGSLPWTAM-VFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCA 317 (476)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~ 317 (476)
+|+|.++...+..++....+... ...|.|+++ +|.++...++......++.+++.++.+++.||+++|+..
T Consensus 225 ~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~------- 297 (448)
T PRK09848 225 KRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTF------- 297 (448)
T ss_pred hCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH-------
Confidence 89999888777766666554444 456777776 787766655555555677888999999999999988632
Q ss_pred HHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCcc-------chhhHHHHHHhhhhh
Q 011831 318 QFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAK-------HRTMIYAFDRAFEGS 390 (476)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~-------~~g~~~g~~~~~~~~ 390 (476)
..+..+..... +.+.. ....+ .+......++.|++.+...+ ...++..|..|.+ .+|..+|+.+....+
T Consensus 298 ~~g~~~~~i~~-~~~~~-~~~~~-~~~~~~~~~l~g~G~~~~~~-~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~kl 373 (448)
T PRK09848 298 LIGALLGTCGY-LLFFW-VSVWS-LPVALVALAIASIGQGVTMT-VMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKC 373 (448)
T ss_pred HHHHHHHHHHH-HHHHH-cCchh-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHH
Confidence 12222211111 11111 11122 23344556667777777776 6678888877643 459999999999999
Q ss_pred hhhhhhHHHHHHHhhhhcCC
Q 011831 391 FSSFAAPLVGILSEKMFGYD 410 (476)
Q Consensus 391 ~~~~~~~~~g~l~~~~~~~~ 410 (476)
+.++++.+.|.+.+. .+|+
T Consensus 374 g~aig~~i~g~~l~~-~G~~ 392 (448)
T PRK09848 374 GQAIGGSIPAFILGL-SGYI 392 (448)
T ss_pred HHHHHHHHHHHHHHH-cCCC
Confidence 999999999999987 5664
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-21 Score=185.70 Aligned_cols=338 Identities=13% Similarity=0.122 Sum_probs=222.9
Q ss_pred hhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhh----cCCch-hHHHHHHHHHHHHHHHHhhhh------HH
Q 011831 36 SVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVIN----YDRPA-VLTIGILCWAFSTAAVGASQH------FL 104 (476)
Q Consensus 36 ~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr----~Grr~-~~~~~~~~~~~~~~~~~~~~~------~~ 104 (476)
.+...+.+..|+++..+|.+..+.-+--++..|+.|.++|| +|||| .++++.+..+++..++-..++ ..
T Consensus 31 ~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~ 110 (460)
T PRK11462 31 YMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMI 110 (460)
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHH
Confidence 34566777889999999999999999999999999999996 68876 566777777877766654442 33
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHhhhcC-CCcchhhHHHHHhhhhhhhhhHHHHHHHHhhccc--CCCCchhHHHHHHH
Q 011831 105 HVGMWRAVNGFGLAIVIPALQSFIADSYK-DGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQF--WGVPGWRCAFILMA 181 (476)
Q Consensus 105 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~--~~~~~wr~~f~i~~ 181 (476)
.+.+.-++..++.......-.++.+|..+ +|||++..++...+.++|..+++.+...+.+..+ ....+|+....+.+
T Consensus 111 y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ 190 (460)
T PRK11462 111 YAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLS 190 (460)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence 45566677788888888888899999985 6899999999999999999888888766654311 11247888888888
Q ss_pred HHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhhhhhH
Q 011831 182 TLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTA 261 (476)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (476)
++.++...+.+...+|+++..++ + .+.++..+..+++|.++.++...++.......
T Consensus 191 ii~~i~~~i~~~~~kE~~~~~~~---------------------~---~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~ 246 (460)
T PRK11462 191 VVAFMMLAFCFFTTKERVEAPPT---------------------T---TSMREDLRDIWQNDQWRIVGLLTIFNILAVCV 246 (460)
T ss_pred HHHHHHHHHHHhcceeccCCCcc---------------------C---CCHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 87777766666555543221100 0 01234456677888887776555444443333
Q ss_pred H-HHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCc
Q 011831 262 M-VFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSV 339 (476)
Q Consensus 262 ~-~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (476)
. .....|.+. .|. +...+.+.....++.+++.++++++.||+++|+.. .. +........ +.....+ ..
T Consensus 247 ~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~------~~-~~~~~~~~~-~~~~~~~-~~ 316 (460)
T PRK11462 247 RGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIF------WW-TNALLAVIS-LAMFFVP-MQ 316 (460)
T ss_pred HHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH------HH-HHHHHHHHH-HHHHHhc-hh
Confidence 3 222333333 333 33445566677888899999999999999988631 11 111111111 1111222 22
Q ss_pred chHHHHHHHHHHHHHHHHhhhcccccchhhcccC-------ccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhhcCC
Q 011831 340 SNYYTYAVTLVLMGLTISWNATAANGPMFAEVVP-------AKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGYD 410 (476)
Q Consensus 340 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p-------~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 410 (476)
+.+ ...+..++.|++.+...+ ..+++..|..+ .+..|...+.......++.++++.+.|.+.+. .+|+
T Consensus 317 ~~~-~~~~~~~l~g~~~~~~~~-l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~-~Gy~ 391 (460)
T PRK11462 317 ASI-TMFVFIFVIGVLHQLVTP-IQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAY-GGYD 391 (460)
T ss_pred HHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC
Confidence 211 222334455666555444 55677777655 33345666777799999999999999999997 5774
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-21 Score=180.30 Aligned_cols=352 Identities=13% Similarity=0.093 Sum_probs=232.7
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHHh-cCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHH--H-HHH
Q 011831 19 LINLAAIMERADENLLPSVYKEVSEA-FNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCW--A-FST 94 (476)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~--~-~~~ 94 (476)
.....++...+..+..-+..+...++ .|+|.+++|.+.++..+...+.+|+.|.++||+|.||-++..+.+. . ...
T Consensus 11 ~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pf 90 (412)
T PF01306_consen 11 WLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPF 90 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHH
Confidence 33444444555566667777766665 8999999999999999999999999999999999887554433222 2 222
Q ss_pred HHHHhhh----hHH-HHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCC
Q 011831 95 AAVGASQ----HFL-HVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWG 169 (476)
Q Consensus 95 ~~~~~~~----~~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~ 169 (476)
....+.+ |.+ ..+++-+..|+......|+..+++.++. ++.+.-.|-..+..++|.+++..++|.+.+.
T Consensus 91 f~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i---- 164 (412)
T PF01306_consen 91 FIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI---- 164 (412)
T ss_dssp HHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee----
Confidence 2222322 222 2233334455566667778888887775 5566677888899999999999999999874
Q ss_pred CCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHH
Q 011831 170 VPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIV 249 (476)
Q Consensus 170 ~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (476)
+-+..|++....+++..++.++..++.++.....+.++++ + .+...++..+++|+|.+|.+.
T Consensus 165 --~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~--------------~--~~~~~~~~~~l~k~~~fw~~~ 226 (412)
T PF01306_consen 165 --NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAK--------------K--DKVSLKDVLSLFKMRNFWFFV 226 (412)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS----------------------HHHHHHHTTSHHHHHHH
T ss_pred --CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccC--------------C--CCCcHHHHHHHhcchhHHHHH
Confidence 5678888877776666666555554433322221111100 0 011234556788999999988
Q ss_pred HHHHhhhhhhhHH-HHHHHHHHH----hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhh
Q 011831 250 LQGIVGSLPWTAM-VFFTMWFEL----IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMG 324 (476)
Q Consensus 250 ~~~~~~~~~~~~~-~~~~~~~~~----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~ 324 (476)
+........|... ...|.|..+ .+.+....|.+.+..-+..++...+..++.+|+|.|+. ++++
T Consensus 227 l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~-----------Llla 295 (412)
T PF01306_consen 227 LFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNL-----------LLLA 295 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-----------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhH-----------HHHH
Confidence 8777766666665 456777654 34556778889999999999999999999999999983 1122
Q ss_pred hhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHH-HhhhhhhhhhhhHHHHHHH
Q 011831 325 IPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFD-RAFEGSFSSFAAPLVGILS 403 (476)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~-~~~~~~~~~~~~~~~g~l~ 403 (476)
..+..+=.......++. +.+...-.+.++-...... ...-++.+.+|++..++...+. +...+++..+.+.+.|.+.
T Consensus 296 g~i~~iRi~~~~~~~~~-~~i~~~klLH~~e~~l~lv-a~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~ly 373 (412)
T PF01306_consen 296 GVIMAIRIIGSGFATNP-WVISLIKLLHALEFPLLLV-AAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLY 373 (412)
T ss_dssp HHHHHHHHHHHHT--SH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcch-HHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhH
Confidence 22221222222223333 3456777788887777776 6688999999999999999985 6777888889999999999
Q ss_pred hhhh
Q 011831 404 EKMF 407 (476)
Q Consensus 404 ~~~~ 407 (476)
|+.|
T Consensus 374 d~~G 377 (412)
T PF01306_consen 374 DRIG 377 (412)
T ss_dssp HHHH
T ss_pred hhcC
Confidence 9963
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-20 Score=179.93 Aligned_cols=379 Identities=14% Similarity=0.107 Sum_probs=222.2
Q ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHH-HHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhc-CCchhHHHHHHHHH
Q 011831 14 SLSLILINLAAIMERADENLLPSVYKEV-SEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINY-DRPAVLTIGILCWA 91 (476)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~~~~~~~~~~ 91 (476)
.+.+..++...+...+..+.+...+|.+ .+++|.++.+.+.+.+.+.....++.+++|+++||+ ||||++.++.++.+
T Consensus 8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~ 87 (493)
T PRK15462 8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMA 87 (493)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHH
Confidence 3445555556666666666666666654 567899999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhh-hHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCC--cchhhHHHHHhhhhhhhhhHHHHHHHHhhcccC
Q 011831 92 FSTAAVGASQ-HFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDG--VRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFW 168 (476)
Q Consensus 92 ~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~ 168 (476)
++.++++..+ +...+.+...+.++|.|...+...++++|.+|++ +|.+++++.....++|..++|.+.+++.+.
T Consensus 88 lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~--- 164 (493)
T PRK15462 88 IGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE--- 164 (493)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 9988777543 2233444445555667777787889999999875 699999999999999999999999999887
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhheeeccC-CCCCC-CccCCCCCCChhh---------------HhhhcCCccchhH--
Q 011831 169 GVPGWRCAFILMATLSVLIAFLVLVFVVDP-RKKAS-TFHGTGENFDRDE---------------LVEKGNTSVSSVW-- 229 (476)
Q Consensus 169 ~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~---------------~~~~~~~~~~~~~-- 229 (476)
.|||+.|.+.++.. +.+++.+...++. ++... ++++.+++ .... .............
T Consensus 165 --~Gw~~~F~iaaigm-~l~li~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (493)
T PRK15462 165 --YSWAMGFGLAAVGM-IAGLVIFLCGNRHFTHTRGVNKKVLRAT-NFLLPNWGWLLVLLVATPALITVLFWKEWSVYAL 240 (493)
T ss_pred --hChHHHHHHHHHHH-HHHHHHHHHhhhhhccCCCCCCCCchhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999977644 3343333322211 11100 00000000 0000 0000000000000
Q ss_pred ------------HHHHHhhhhhccchhHHHHHHHHHhhhhhhhHH----HHHHHHHHH------hCCChhHHHHHHHHHH
Q 011831 230 ------------LESWMATKAVIKVPTFQIIVLQGIVGSLPWTAM----VFFTMWFEL------IGFDHSSTAALLSLFA 287 (476)
Q Consensus 230 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~------~g~s~~~~g~~~~~~~ 287 (476)
.-..++....-| ++....+.........+... +-+..|.++ .|++ .....+.+...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~er-~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp 318 (493)
T PRK15462 241 IVATIIGLGVLAKIYRKAENQKQR-KELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINA 318 (493)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHH-hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhH
Confidence 000000000011 22222222222222222222 234444433 2332 23455667777
Q ss_pred hhhhhhhchhhhhhhhhcc--ccCCCcchhHhHHHHHhhhhHHHhhh--hcccc-CcchHHHHHHHHHHHHHHHHhhhcc
Q 011831 288 IGCAVGSFLGGVVADRISQ--AYPHSGRVMCAQFSAFMGIPFSWFLL--TAIPQ-SVSNYYTYAVTLVLMGLTISWNATA 362 (476)
Q Consensus 288 ~~~~~~~~~~g~l~dr~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~ 362 (476)
+.-++.+++.+++=.|..+ |.+... .-......+++..+..+.. ..... ...+...+....++.+++.-...|
T Consensus 319 ~~ii~l~P~~a~lw~~l~~~~~~~s~~-~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sP- 396 (493)
T PRK15462 319 FAVMLCGVFLAWVVKESVAGNRTVRIW-GKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDP- 396 (493)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcH-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHCh-
Confidence 7777777776666566533 222110 1111111222222221211 11111 111223355667778888877777
Q ss_pred cccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 363 ANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 363 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
+..++++++.|++.+|..+|..... .+++++.+.|++.+..
T Consensus 397 vgls~~~~laP~~~~g~~mg~w~l~---~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 397 VAMSQITRIEIPGVTGVLTGIYMLL---SGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 8999999999999999999998432 3356666777776654
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-22 Score=193.21 Aligned_cols=341 Identities=16% Similarity=0.245 Sum_probs=255.1
Q ss_pred hhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhh----hcCCch-hHHHHHHHHHHHHHHHHhh-h-------h
Q 011831 36 SVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVI----NYDRPA-VLTIGILCWAFSTAAVGAS-Q-------H 102 (476)
Q Consensus 36 ~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~d----r~Grr~-~~~~~~~~~~~~~~~~~~~-~-------~ 102 (476)
...+.+.+.+|+++...|.+..+..+..++..|+.|.++| |+|||| .++.+.+..+++..++... + .
T Consensus 23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~ 102 (428)
T PF13347_consen 23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK 102 (428)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence 4567778888999999999999999999999999999999 899877 6677888888888877765 4 2
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHhhhcC-CCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCC--CchhHHHHH
Q 011831 103 FLHVGMWRAVNGFGLAIVIPALQSFIADSYK-DGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGV--PGWRCAFIL 179 (476)
Q Consensus 103 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~--~~wr~~f~i 179 (476)
...+.+..++..++.........++..|..+ +++|.+..+.-+.+..+|..+...+...+.+..+.+. .+|++...+
T Consensus 103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v 182 (428)
T PF13347_consen 103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV 182 (428)
T ss_pred HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence 3345666777799999999999999999996 5799999999999999999877777777765433222 279999999
Q ss_pred HHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhhhh
Q 011831 180 MATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPW 259 (476)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (476)
.+++.++..++..+..+|++.+.+++ .+..+.++..+..+++|.++.+....++....+
T Consensus 183 ~~iv~~v~~~i~~~~~ke~~~~~~~~---------------------~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~ 241 (428)
T PF13347_consen 183 LAIVGLVFFLITFFFVKERSVEVTEQ---------------------EKKISLRDSLRSLFRNRPFRILLLAFFLQWLAF 241 (428)
T ss_pred HHHHHHHHhhhhhheeeecccccccc---------------------ccccccccchhhhcccchHHHHHHHHHHHHhhh
Confidence 99999988888888877721111110 000223445667888899888888777776665
Q ss_pred hHH-HHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhcccc
Q 011831 260 TAM-VFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQ 337 (476)
Q Consensus 260 ~~~-~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (476)
... ...+.|.+. .|.+ ...+.+.....+..+++.++.++++||+|+|+... .+..+........ .....
T Consensus 242 ~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~-------~~~~~~~~~~~~~-~~~~~ 312 (428)
T PF13347_consen 242 ALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYI-------IGLLLAALGFLLL-FFLGP 312 (428)
T ss_pred hhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehh-------hhHHHHHHHHHHH-HHHHh
Confidence 555 566777776 6665 56677777889999999999999999999998532 1122211111111 11111
Q ss_pred CcchHHHHHHHHHHHHHHHHhhhcccccchhhcccC-------ccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhhcCC
Q 011831 338 SVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVP-------AKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGYD 410 (476)
Q Consensus 338 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p-------~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 410 (476)
...+...+...+.|++.+.... ..+++.+|..+ ++..|..+|+.+....++..+++.+.|.+.+. .+|+
T Consensus 313 --~~~~~~~i~~~l~gi~~~~~~~-~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~-~Gy~ 388 (428)
T PF13347_consen 313 --GSPWLVLILFILAGIGYGAFFV-IPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL-VGYD 388 (428)
T ss_pred --hhHHHHHHHHHHhHhhhccccc-ccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH-hCcC
Confidence 2235566777888888888877 78899998876 34468999999999999999999999999987 5664
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.9e-22 Score=178.06 Aligned_cols=373 Identities=13% Similarity=0.079 Sum_probs=274.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHH
Q 011831 9 KVLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGIL 88 (476)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~ 88 (476)
-.++||.+++..++..+.+.+..-.+++........|+ +....-|+.-+|++.+....+++-|+.||+|-|...+++..
T Consensus 39 Vy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ 117 (480)
T KOG2563|consen 39 VYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTV 117 (480)
T ss_pred cchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHH
Confidence 35678999999999999999998889998888888888 77778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh------hHH--HHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHH
Q 011831 89 CWAFSTAAVGASQ------HFL--HVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLAT 160 (476)
Q Consensus 89 ~~~~~~~~~~~~~------~~~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~ 160 (476)
+..++..+-..+. .++ ....+..+.+.++-.....-..+..-|++++||..+..+-.++..+|.+++.++..
T Consensus 118 ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llpp 197 (480)
T KOG2563|consen 118 LNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPP 197 (480)
T ss_pred HHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccc
Confidence 9999999877652 344 66788899999988888877888999999999999999999999999999999999
Q ss_pred HHhhccc-CCCCchhH--HHHHHHHHHHHHHHHhheeecc-CCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhh
Q 011831 161 IMAGHQF-WGVPGWRC--AFILMATLSVLIAFLVLVFVVD-PRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMAT 236 (476)
Q Consensus 161 ~l~~~~~-~~~~~wr~--~f~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (476)
.+..... .+...|.. .|+..+.++.+..++..+..++ |+.........+ . ..+..+..
T Consensus 198 ilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~------------~------~~~f~~si 259 (480)
T KOG2563|consen 198 ILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAAL------------Q------DASFPKSI 259 (480)
T ss_pred eecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhh------------h------cCcHHHHH
Confidence 8887642 23456765 3554555444444444443333 332222210000 0 02355677
Q ss_pred hhhccchhHHHHHHHHHhhhhhhhHH-HHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchh
Q 011831 237 KAVIKVPTFQIIVLQGIVGSLPWTAM-VFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVM 315 (476)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~ 315 (476)
++.++++.+....+......+.+... +.+..-+...|++...+|.......+++++++++.|.+.||.++-+.
T Consensus 260 ~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~------ 333 (480)
T KOG2563|consen 260 KSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKL------ 333 (480)
T ss_pred HHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHH------
Confidence 78999999998888777766554444 44444445578888899999999999999999999999999977653
Q ss_pred HhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhh
Q 011831 316 CAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFA 395 (476)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~ 395 (476)
............. +.+..........++.......+|++.....| +..-+..|..-|..-++..|+.+..+++.+.+-
T Consensus 334 ~~~v~~~~~~v~~-~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~P-ig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~ 411 (480)
T KOG2563|consen 334 TTLVLYLFALVGT-LMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLP-IGFELGVETTYPVAEGTSSGLLNLSGQIFGVIL 411 (480)
T ss_pred HHHHHHHHHHHHH-HHHHHhhccCCceEehhhhHHHHHHhhcCCCC-cceeeeeeeccccCCcccceeEEeehhHHHHHH
Confidence 1111122222221 11111111111123344666677777666666 888888898766778899999999999999999
Q ss_pred hHHHHHHHhhhhc
Q 011831 396 APLVGILSEKMFG 408 (476)
Q Consensus 396 ~~~~g~l~~~~~~ 408 (476)
..+.+...+..++
T Consensus 412 ~~~~~~~~~~~~~ 424 (480)
T KOG2563|consen 412 VFIMGILAEDLGP 424 (480)
T ss_pred HHHHHHHhhccCC
Confidence 9999998887653
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-19 Score=167.87 Aligned_cols=395 Identities=12% Similarity=0.137 Sum_probs=279.3
Q ss_pred HHHHHHHHHHHHhccc-hhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhh----cCCch-hHHHHHHHHHH
Q 011831 19 LINLAAIMERADENLL-PSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVIN----YDRPA-VLTIGILCWAF 92 (476)
Q Consensus 19 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr----~Grr~-~~~~~~~~~~~ 92 (476)
.-.++-+......... ..++-.+.+..|+++...|.+..+.-+--++.-|+.|.+.|| +||+| .++.+.+..++
T Consensus 16 ~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i 95 (467)
T COG2211 16 GYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAI 95 (467)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHH
Confidence 3333344443333333 334456777889999999999999999999999999999995 78765 78888899999
Q ss_pred HHHHHHhhhh------HHHHHHHHHHHHhhhhhhhhHHHHHHhhhc-CCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhc
Q 011831 93 STAAVGASQH------FLHVGMWRAVNGFGLAIVIPALQSFIADSY-KDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGH 165 (476)
Q Consensus 93 ~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~ 165 (476)
.+.++-.+++ ....++.-.+.+++.......-.++.+|.. +++||.+..++-+.+.++|..+...+...+...
T Consensus 96 ~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~ 175 (467)
T COG2211 96 VAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKL 175 (467)
T ss_pred HHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877763 334566678888998888888888999988 568999999999999999988888887777765
Q ss_pred ccCC--CCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccch
Q 011831 166 QFWG--VPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVP 243 (476)
Q Consensus 166 ~~~~--~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (476)
.+.+ ..||+..-.+.++++++..+.+++-.+|+..+....++ ...++..+.....+++|
T Consensus 176 ~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~-------------------~~~~~~~~~~~~~~~Nr 236 (467)
T COG2211 176 FGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKT-------------------GVKLKLKDSFLLIFKNR 236 (467)
T ss_pred hCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcc-------------------cccccHHHHHHHHHccc
Confidence 3322 57999999999999999888888887776553322100 00123334455678889
Q ss_pred hHHHHHHHHHhhhhhhhHH-HHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHH
Q 011831 244 TFQIIVLQGIVGSLPWTAM-VFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSA 321 (476)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 321 (476)
.+...++..++....+... +....|.+. +|.+.............+.+++.++..++.+|+|+|+.. ..+.
T Consensus 237 p~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~-------~~~~ 309 (467)
T COG2211 237 PLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLF-------LIGL 309 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHH-------HHHH
Confidence 9988888777776666555 455666665 788888888888888888888899999999999999842 2222
Q ss_pred HhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccC-------ccchhhHHHHHHhhhhhhhhh
Q 011831 322 FMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVP-------AKHRTMIYAFDRAFEGSFSSF 394 (476)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p-------~~~~g~~~g~~~~~~~~~~~~ 394 (476)
++....... +...+ .+......+...+.+++.+...+ ..+++++|..+ .+..|...|....+..+|.++
T Consensus 310 ~~~~i~~~~-~~f~~--~~~~~l~~~~~~i~~~g~~~~~~-l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~al 385 (467)
T COG2211 310 LLLAVGYLL-LYFTP--AGSVVLIVVALIIAGVGTGIANP-LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLAL 385 (467)
T ss_pred HHHHHHHHH-HHhhc--CcchHHHHHHHHHHHHHhhcccc-ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHH
Confidence 222222222 22222 23344455566777777777777 78999987653 345588999999999999999
Q ss_pred hhHHHHHHHhhhhcCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011831 395 AAPLVGILSEKMFGYDSKAIDPVMGSPREALALSRGLLSMMAVPFGLCCLFYT 447 (476)
Q Consensus 395 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (476)
+..+.|++.+. .+|.+.. .........+....+.+.-++..+++.+...
T Consensus 386 a~~~~g~~L~~-~Gyv~~~---~~Q~~~al~gI~~~~~~~Pa~l~l~~~i~~~ 434 (467)
T COG2211 386 AGFIPGWILGA-IGYVPNV---SAQSASALFGIRFLFIILPALLLLLAAIIIF 434 (467)
T ss_pred HHHHHHHHHHH-cCCCCCc---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998 6664321 0233344455555555554554444444433
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.5e-20 Score=179.37 Aligned_cols=413 Identities=16% Similarity=0.213 Sum_probs=293.3
Q ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHH
Q 011831 15 LSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFST 94 (476)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~ 94 (476)
..+.++.+..+...+....+...+..+.+.|+++.++.|++.+.+-++..+...+..+..-|.-|-+.+-+|++++++++
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs 176 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS 176 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence 34556677777777777888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh--------------------h------------------------------h-HH-HHHHHHHHHHhhhhhhhh
Q 011831 95 AAVGAS--------------------Q------------------------------H-FL-HVGMWRAVNGFGLAIVIP 122 (476)
Q Consensus 95 ~~~~~~--------------------~------------------------------~-~~-~l~~~r~l~G~~~~~~~~ 122 (476)
+++++= + + ++ .++++.++.|+|....++
T Consensus 177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t 256 (735)
T KOG3626|consen 177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT 256 (735)
T ss_pred HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence 997761 0 0 22 467789999999999999
Q ss_pred HHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhccc-C---------CC----CchhHHHHHHHHHHHHHH
Q 011831 123 ALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQF-W---------GV----PGWRCAFILMATLSVLIA 188 (476)
Q Consensus 123 ~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~-~---------~~----~~wr~~f~i~~~~~~~~~ 188 (476)
...+|+-|...+++-+..+|+......+|.++|-++++++.+.-. . .+ ..|..-|++.+.+.++.+
T Consensus 257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a 336 (735)
T KOG3626|consen 257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA 336 (735)
T ss_pred CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999876410 0 00 138888999999999999
Q ss_pred HHhheeeccCCCCCCCccCCCCCCChhh-HhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhhhhhHH-HHHH
Q 011831 189 FLVLVFVVDPRKKASTFHGTGENFDRDE-LVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAM-VFFT 266 (476)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 266 (476)
+..++++++.+...++.+.++.+....+ ...+.......+.++..+..++++++|.+...++...+....+..+ +|+|
T Consensus 337 ~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlP 416 (735)
T KOG3626|consen 337 VPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLP 416 (735)
T ss_pred HHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhH
Confidence 9999998886654432111111111000 0112222233456788888999999999999988888877765555 8999
Q ss_pred HHHHH-hCCChhHHHHHHHHHHh-hhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhc----------
Q 011831 267 MWFEL-IGFDHSSTAALLSLFAI-GCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTA---------- 334 (476)
Q Consensus 267 ~~~~~-~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 334 (476)
-|+++ +|.++..+..+.....+ +..+|.+++|++.+|+..+..-.. .+.++..++.+.+....++.
T Consensus 417 KyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a--~~~~~~~~l~l~~~~~~~~igC~~~~~aG~ 494 (735)
T KOG3626|consen 417 KYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAA--KFVIVCSVLSLLFYSLLFFIGCESSPVAGV 494 (735)
T ss_pred HHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHH--HHHHHHHHHHHHHHHHHHEecCCCCcccce
Confidence 99986 99999999999876665 555788899999999865432111 11111111211110000000
Q ss_pred --------------------------------------------------------------------cc----------
Q 011831 335 --------------------------------------------------------------------IP---------- 336 (476)
Q Consensus 335 --------------------------------------------------------------------~~---------- 336 (476)
.+
T Consensus 495 ~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~~~~~~~~~a~ 574 (735)
T KOG3626|consen 495 TNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVPTNKNGNGSAK 574 (735)
T ss_pred ecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeeccccccccccCCCceee
Confidence 00
Q ss_pred -----cC-cchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhh-hhhHHHHHHHhhhhc-
Q 011831 337 -----QS-VSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSS-FAAPLVGILSEKMFG- 408 (476)
Q Consensus 337 -----~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~-~~~~~~g~l~~~~~~- 408 (476)
.. ......+ ++.+.++.+.+....+....++.+.+|+|+|..+.|+..++.++.+. -+|.+.|++.|...-
T Consensus 575 ~G~C~~~c~~~~~~F-l~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~tCl~ 653 (735)
T KOG3626|consen 575 KGYCPNDCCRQFLIF-LALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDTTCLL 653 (735)
T ss_pred cCCCCCCcchhhHHH-HHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhhHHHH
Confidence 00 0012223 33333333333333225677788899999999999999998887666 899999999998653
Q ss_pred CCCCCCCCCCCCchHHHHHHHH
Q 011831 409 YDSKAIDPVMGSPREALALSRG 430 (476)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~ 430 (476)
|+...+........+...+++.
T Consensus 654 W~~~C~~~GsC~iYd~~~lr~~ 675 (735)
T KOG3626|consen 654 WGKSCGSRGSCLIYDNDSLRYR 675 (735)
T ss_pred hhcccCCCCceeeechHHHHHH
Confidence 3333333333334455566654
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.1e-20 Score=167.80 Aligned_cols=272 Identities=14% Similarity=0.101 Sum_probs=189.0
Q ss_pred HhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCC--------
Q 011831 98 GASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWG-------- 169 (476)
Q Consensus 98 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~-------- 169 (476)
+...+++.+++.-++.|.|.+...+..+.++++..|+|++.+.+++.+..+++|..++|.+++.+......+
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 356789999999999999999999999999999999999999999999999999999999999888431100
Q ss_pred ---CCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHH
Q 011831 170 ---VPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQ 246 (476)
Q Consensus 170 ---~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (476)
..+|+++|++.+.+.++..++..+. +-|+.+.+++ ++.. .+ +. . +.+..+++|.++
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~-~~p~~~~~~~----~~~~-------~~--~~---~----~~~~~~~~~~~~ 143 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFL-PLPELQEADV----ARVS-------SG--DT---T----QKTSAFQFTHLV 143 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCCCCcccc----cccc-------cc--cc---c----chhhHHhhHHHH
Confidence 1479999997777665555544433 2221111000 0000 00 00 0 011244556666
Q ss_pred HHHHHHHhhhhh-hhHHHHHHHHHHH---hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHH
Q 011831 247 IIVLQGIVGSLP-WTAMVFFTMWFEL---IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAF 322 (476)
Q Consensus 247 ~~~~~~~~~~~~-~~~~~~~~~~~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 322 (476)
...+..++.... .+...|.+.|+++ +|+++.+++...+....+.++|+++.+++.||+++|+.. ..+..
T Consensus 144 l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l-------~~~~~ 216 (310)
T TIGR01272 144 LGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYL-------AFNAF 216 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH-------HHHHH
Confidence 666555555544 4555899999975 599999999999999999999999999999999988631 12222
Q ss_pred hhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHH
Q 011831 323 MGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGIL 402 (476)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l 402 (476)
++.... +.... . +.... .....+.|++.+...| ...+...+..| ++.+++.++. ..+.+|+++.|.+.|.+
T Consensus 217 l~~~~~-~l~~~-~--~~~~~--~~~~~l~g~~~s~i~P-~~~s~a~~~~~-~~~~~asai~-~~~~~Gg~i~P~l~G~l 287 (310)
T TIGR01272 217 LAVLLS-IGAAL-T--HGYVA--MWFVLALGLFNSIMFP-TIFSLALNALG-RHTSQGSGIL-CLAIVGGAIVPLLQGSL 287 (310)
T ss_pred HHHHHH-HHHHH-c--CCHHH--HHHHHHHHHHHHHHHH-HHHHHHHhhhh-hhhhhhHHHH-HHHHhcchHHHHHHHHH
Confidence 222211 11111 1 11111 2345577888888888 66777777777 4466777775 67889999999999999
Q ss_pred Hhhh
Q 011831 403 SEKM 406 (476)
Q Consensus 403 ~~~~ 406 (476)
.|..
T Consensus 288 ad~~ 291 (310)
T TIGR01272 288 ADCL 291 (310)
T ss_pred HHhc
Confidence 9975
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-18 Score=155.50 Aligned_cols=329 Identities=13% Similarity=0.097 Sum_probs=245.2
Q ss_pred chhHHHHHHHHHHHhhhhhhhHhhhhcCCch-hHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHhhhhhhhhHHHH
Q 011831 51 DLGYLTFIRNFVQGLSSPLAGVLVINYDRPA-VLTIGILCWAFSTAAVGASQH---FLHVGMWRAVNGFGLAIVIPALQS 126 (476)
Q Consensus 51 ~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~-~~~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~~~~~~~~~~~~ 126 (476)
..|...++..+..++.+|+.|.++|+.|+|| .+-....+..+...+..++++ ++..++.-.+..++.....+.-.+
T Consensus 59 ~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds 138 (438)
T COG2270 59 YWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDS 138 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhh
Confidence 4677788999999999999999999999877 455555566666666777655 444566678888898888999999
Q ss_pred HHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhc-------------ccCCCCchhHHHHHHHHHHHHHHHHhhe
Q 011831 127 FIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGH-------------QFWGVPGWRCAFILMATLSVLIAFLVLV 193 (476)
Q Consensus 127 ~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~-------------~~~~~~~wr~~f~i~~~~~~~~~~~~~~ 193 (476)
++.+..++++-++..++-.....+|..+.-++.-..... +..+...-|..+.+.++-.++..+..++
T Consensus 139 ~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~ 218 (438)
T COG2270 139 MLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMIL 218 (438)
T ss_pred HhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHh
Confidence 999999999999998888888888887766554222211 0013356799999999999999988888
Q ss_pred eeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHh-hhhhhhHHHHHHHHHH-H
Q 011831 194 FVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIV-GSLPWTAMVFFTMWFE-L 271 (476)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~ 271 (476)
..+++++...+. .......+++.+.++|+..+++.+...++..++ .-...+...+-..|-. +
T Consensus 219 ~v~~~~~~~~~~----------------~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~ 282 (438)
T COG2270 219 NVHDAEKISSPP----------------PTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAAD 282 (438)
T ss_pred cccccccccccc----------------hHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 888776532111 011234457777888888888877666555444 4455666678888887 5
Q ss_pred hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHH
Q 011831 272 IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVL 351 (476)
Q Consensus 272 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (476)
+|++..+..++.....+.+++|+++.|++.||++.|+... .++.+........+ .... ...+....++
T Consensus 283 ~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~-------~~lvi~~~~~~~~~-~~~~----~~~f~i~gll 350 (438)
T COG2270 283 LGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLM-------IGLVILSIAALYLI-FLEG----ELDFWILGLL 350 (438)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeh-------HHHHHHHHHHHHHH-Hccc----cHHHHHHHHH
Confidence 9999999999999999999999999999999999996421 11111111111111 1111 1335566677
Q ss_pred HHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhhc
Q 011831 352 MGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFG 408 (476)
Q Consensus 352 ~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~ 408 (476)
.|+..+..+. ...++..+.+|+++.++..|+++..+...+.+||.+.+.+.+.+++
T Consensus 351 ~g~s~G~~qA-~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~ 406 (438)
T COG2270 351 VGTSLGGAQA-SSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGS 406 (438)
T ss_pred HHHhcchHHH-HHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 8888888888 7899999999999999999999999999999999999999999765
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-21 Score=191.13 Aligned_cols=386 Identities=14% Similarity=0.209 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHH
Q 011831 19 LINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVG 98 (476)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~ 98 (476)
.+++..+............+..+++.|+++.++.|++.+.+-++..+..++..++.+|..|-|.+-.|.++.++++++++
T Consensus 7 ~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~ 86 (539)
T PF03137_consen 7 FLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFA 86 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHh
Confidence 34444555566666778889999999999999999999999999999999999999998888899999999999998876
Q ss_pred hh----h----------------------------------------------hHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 011831 99 AS----Q----------------------------------------------HFLHVGMWRAVNGFGLAIVIPALQSFI 128 (476)
Q Consensus 99 ~~----~----------------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i 128 (476)
+= + -+..+++++++.|+|....++...+|+
T Consensus 87 lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYi 166 (539)
T PF03137_consen 87 LPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYI 166 (539)
T ss_dssp -----------------------------------------------------------------SSS------------
T ss_pred ccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeee
Confidence 50 0 023478889999999999999999999
Q ss_pred hhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhc----ccC---------CC----CchhHHHHHHHHHHHHHHHHh
Q 011831 129 ADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGH----QFW---------GV----PGWRCAFILMATLSVLIAFLV 191 (476)
Q Consensus 129 ~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~----~~~---------~~----~~wr~~f~i~~~~~~~~~~~~ 191 (476)
-|..++++-+..+|+..+...+|.++|.++++.+.+. ... .+ ..|...|++.+++.++.++..
T Consensus 167 DDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl 246 (539)
T PF03137_consen 167 DDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPL 246 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987753 000 01 138888888999988888888
Q ss_pred heeeccCCCCCCCccCCCCC-CChhhHhhh---c---CCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhhhhhHH-H
Q 011831 192 LVFVVDPRKKASTFHGTGEN-FDRDELVEK---G---NTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAM-V 263 (476)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 263 (476)
+.++++-+...+..++++.+ .+.++...+ + ........++..+..++++++|.+....+...........+ +
T Consensus 247 ~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~t 326 (539)
T PF03137_consen 247 FFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFAT 326 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 88887755542111111110 000000000 0 11122445777888899999999999888888777655444 8
Q ss_pred HHHHHHHH-hCCChhHHHHHHHHHHh-hhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhH-HHhhh--------
Q 011831 264 FFTMWFEL-IGFDHSSTAALLSLFAI-GCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPF-SWFLL-------- 332 (476)
Q Consensus 264 ~~~~~~~~-~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------- 332 (476)
|+|.|+|. ++.++.+++++.....+ ++++|.+++|++.+|++-+.....++. .+..++.... ....+
T Consensus 327 F~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~--~v~~~v~~~~~~~~~~~~C~~~~~ 404 (539)
T PF03137_consen 327 FLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFC--IVVSIVSVILYSPLFFLGCPNPPI 404 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHH--HHHHHHHHHHHHHHHeecCCCCce
Confidence 99999996 99999999988876655 677899999999999865432211111 1111111111 00000
Q ss_pred --hcccc----------------------------------C-cchHHHHHHHHHHHHHHHHhhhcccccchhhcccCcc
Q 011831 333 --TAIPQ----------------------------------S-VSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAK 375 (476)
Q Consensus 333 --~~~~~----------------------------------~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~ 375 (476)
...+. . ...+..+.+..++.-+..+.... ......-+.+|++
T Consensus 405 aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~-p~~~i~LR~V~~~ 483 (539)
T PF03137_consen 405 AGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQV-PSTLITLRCVPPE 483 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhccc-chheeeeccCChh
Confidence 00000 0 00122233333333333344444 3456666889999
Q ss_pred chhhHHHHHHhhhhhhhh-hhhHHHHHHHhhhh
Q 011831 376 HRTMIYAFDRAFEGSFSS-FAAPLVGILSEKMF 407 (476)
Q Consensus 376 ~~g~~~g~~~~~~~~~~~-~~~~~~g~l~~~~~ 407 (476)
+|+.+.|+...+..+.+. -+|.+.|.+.|...
T Consensus 484 ~rs~AlGv~~~~~rllg~IPgPIifG~iiD~tC 516 (539)
T PF03137_consen 484 QRSFALGVQWLIIRLLGFIPGPIIFGAIIDSTC 516 (539)
T ss_dssp ---------------------------------
T ss_pred hcchhhhHHHHHHHhhcCcchHHHHhHHHhhhh
Confidence 999999999988777665 89999999999864
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-16 Score=142.58 Aligned_cols=334 Identities=14% Similarity=0.106 Sum_probs=230.9
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcC-----Cch-hHHHHHHHHHHHHHHHHhh-----h-------
Q 011831 40 EVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYD-----RPA-VLTIGILCWAFSTAAVGAS-----Q------- 101 (476)
Q Consensus 40 ~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G-----rr~-~~~~~~~~~~~~~~~~~~~-----~------- 101 (476)
.+..|++++..-.+...+...+... ..+.+|+.+|+.+ ||. .+..|.++...+..+.+++ .
T Consensus 5 VMIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~ 83 (403)
T PF03209_consen 5 VMIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG 83 (403)
T ss_pred hHHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence 4667899999888988888887765 6999999999998 765 5666777777766666553 2
Q ss_pred hH--H--HHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCch-hH-
Q 011831 102 HF--L--HVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGW-RC- 175 (476)
Q Consensus 102 ~~--~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~w-r~- 175 (476)
+. + ...+.-.+.|+|.+...++..++++|..|+|+|+++.++.....-+|.+++..+.+.+.+. ++- |.
T Consensus 84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~-----~s~~rL~ 158 (403)
T PF03209_consen 84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDP-----FSPERLI 158 (403)
T ss_pred ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccc-----cCHHHHH
Confidence 11 2 2345567889999999999999999999999999999999999999999999999988864 332 22
Q ss_pred -HHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHh
Q 011831 176 -AFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIV 254 (476)
Q Consensus 176 -~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (476)
.+...+++.++..++..+-.|.+....... +++ ++ .+..+.++++..+|....+....+.
T Consensus 159 ~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~-~~~---------------~~---~~f~~a~~~~~~~~~a~~f~~fl~l 219 (403)
T PF03209_consen 159 QVIQGVALIALLLNLIALWGQEPRRSRRAAA-AER---------------PR---PPFREAWRQVWASPQARRFFVFLFL 219 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCcccccC-CCC---------------CC---ccHHHHHHHHHhCCChhHHHHHHHH
Confidence 222233333333333333333222222111 100 11 1222344445566666666665555
Q ss_pred hhhhhhHH-HHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhh-hccccCCCcchhHhHHHHHhhhhHHHhh
Q 011831 255 GSLPWTAM-VFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADR-ISQAYPHSGRVMCAQFSAFMGIPFSWFL 331 (476)
Q Consensus 255 ~~~~~~~~-~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (476)
....+... ..+-+|--+ +|++..+...+....+.+.++|....|++..| .++++ ....++..+.......
T Consensus 220 ~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~-------~a~~G~~~~~~~f~li 292 (403)
T PF03209_consen 220 GTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKR-------TAALGCLLGALAFALI 292 (403)
T ss_pred HHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchH-------HHHHHHHHHHHHHHHH
Confidence 55555555 445555555 99999999999999999999999999987774 34433 2233333333333222
Q ss_pred hhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhhc
Q 011831 332 LTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFG 408 (476)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~ 408 (476)
.......+ .+.+-...+++|++.|.... ...+...+..++++.|..+|.....+.+...++..++|.+.|....
T Consensus 293 i~a~~~~~--~~~~~~~~~l~G~g~G~f~v-gals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~ 366 (403)
T PF03209_consen 293 ILAGPLGS--PWLFRPGVFLLGLGNGLFTV-GALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRA 366 (403)
T ss_pred HHHHhccc--chHHHHHHHHHHHhhhHHHH-HHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222 34566778889999888887 6677888888889999999999999999999999999999998644
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-16 Score=145.28 Aligned_cols=379 Identities=14% Similarity=0.125 Sum_probs=234.6
Q ss_pred hHHHHHHHHHHHHHHHHHhccchhh-HHHHHHhcC----CCCCchhHHHHHHHHHHHhhhhhhhHhhhhc-CCchhHHHH
Q 011831 13 ISLSLILINLAAIMERADENLLPSV-YKEVSEAFN----AGPSDLGYLTFIRNFVQGLSSPLAGVLVINY-DRPAVLTIG 86 (476)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~----~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~~~~~ 86 (476)
+-+.+..++...+.+.++.+-+... .-.+..+++ .++++..-+.+.|.--.-+...++|+++||+ |+|+.+..|
T Consensus 19 ~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lG 98 (498)
T COG3104 19 QPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLG 98 (498)
T ss_pred CCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 4556777888888888888776544 456666666 8888888788888777778899999999995 999999999
Q ss_pred HHHHHHHHHHHHhhh--hHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCC--cchhhHHHHHhhhhhhhhhHHHHHHHH
Q 011831 87 ILCWAFSTAAVGASQ--HFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDG--VRGAGFGLLSLVGTMGGIGGGVLATIM 162 (476)
Q Consensus 87 ~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~lG~~~g~~~~~~l 162 (476)
.++.++|.++.+.++ +...++++-.+.++|.|..-+...+++.|.+|++ +|-..++++.++.++|+.++|++.+++
T Consensus 99 ail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~ 178 (498)
T COG3104 99 AILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLL 178 (498)
T ss_pred HHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHH
Confidence 999999999999984 7888999999999999999999999999999774 477888999999999999999999999
Q ss_pred hhcccCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHh---------hhc--CCccchhH--
Q 011831 163 AGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELV---------EKG--NTSVSSVW-- 229 (476)
Q Consensus 163 ~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~--~~~~~~~~-- 229 (476)
.+. .||+..|.+.++-..+..+..+...+.-.....+.++...+....... ... .......+
T Consensus 179 ~~~-----~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 253 (498)
T COG3104 179 AIN-----YGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSG 253 (498)
T ss_pred HHh-----hCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998 999999999888665555554444332222211111111110000000 000 00000000
Q ss_pred --------------HHHHHhhhhhcc-chhHHHHHHHHH---hhhhhhhHH-HHHHHHHHH------hCCChhHHHHHHH
Q 011831 230 --------------LESWMATKAVIK-VPTFQIIVLQGI---VGSLPWTAM-VFFTMWFEL------IGFDHSSTAALLS 284 (476)
Q Consensus 230 --------------~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~------~g~s~~~~g~~~~ 284 (476)
.+..+. ++... +++.+..+..+. ..+..+... +-+..|.++ +|++ .......+
T Consensus 254 ~~~~~~i~~~~~~~~~~~~~-~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~-vp~~~fQs 331 (498)
T COG3104 254 VLLVISILIAIIYFAEAFRS-PKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFE-VPPAWFQS 331 (498)
T ss_pred HHHHHHHHHHHHHHHHHhcc-CccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccccee-cCHHHHHh
Confidence 000000 00001 122222222222 222222222 233444332 2322 33456677
Q ss_pred HHHhhhhhhhchhhhhhhhhccc--cCCCcchhHhHHHHHhhhhHHHhhhh----ccccCcchHHHHHHHHHHHHHHHHh
Q 011831 285 LFAIGCAVGSFLGGVVADRISQA--YPHSGRVMCAQFSAFMGIPFSWFLLT----AIPQSVSNYYTYAVTLVLMGLTISW 358 (476)
Q Consensus 285 ~~~~~~~~~~~~~g~l~dr~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~ 358 (476)
...+.-++..++..++..|.+++ .+... .-......+++..+..+... ..+....+.+..+...++.+++.-+
T Consensus 332 lNp~~Iii~~pI~a~l~~~l~~~~~~ps~~-~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~ 410 (498)
T COG3104 332 LNPFFIILFSPILAALWTKLGRGNKQPSTP-IKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELF 410 (498)
T ss_pred hCHHHHHHHHHHHHHHHhHhhcCCCCCCcc-hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 77777777777777777775443 22211 11111112222222222222 1112223345566777888888877
Q ss_pred hhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHH
Q 011831 359 NATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVG 400 (476)
Q Consensus 359 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g 400 (476)
..+ +..+++....|+...+..++........+..++..+.+
T Consensus 411 iSp-vGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 411 ISP-VGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred hCH-HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence 777 88999999999888887777776555555444444443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-17 Score=153.98 Aligned_cols=374 Identities=11% Similarity=0.056 Sum_probs=233.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHh--cCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCC-chhHHH
Q 011831 9 KVLGISLSLILINLAAIMERADENLLPSVYKEVSEA--FNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDR-PAVLTI 85 (476)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Gr-r~~~~~ 85 (476)
..+.+|+.+.+..+..++.....+.+.+..-++.++ .+.+.+..|++.++..++.+++++..|+...|.+. |+.++.
T Consensus 28 ~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~ 107 (488)
T KOG2325|consen 28 ERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIV 107 (488)
T ss_pred ccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHH
Confidence 346789999999999999999988887766455555 67788889999999999999999999999999997 888999
Q ss_pred HHHHHHHHHHHH-Hhh---h-hHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHH
Q 011831 86 GILCWAFSTAAV-GAS---Q-HFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLAT 160 (476)
Q Consensus 86 ~~~~~~~~~~~~-~~~---~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~ 160 (476)
+.++..+++++. +.. + ..+.++++|++.|+|.+.. ....+|+++....++|.|+++....+..+|.++||.++.
T Consensus 108 s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~ 186 (488)
T KOG2325|consen 108 SFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQL 186 (488)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHH
Confidence 999999999998 442 3 6788999999999997654 556799999998999999999999999999999999998
Q ss_pred HHhhcccCC--------CCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHH
Q 011831 161 IMAGHQFWG--------VPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLES 232 (476)
Q Consensus 161 ~l~~~~~~~--------~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (476)
.+......+ ..-+..+-|+.+++.++..++..++.+|......+++.+++ .+++.+.++....+
T Consensus 187 ~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~--~~~~~~~~~~~~~~------ 258 (488)
T KOG2325|consen 187 AFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSV--EEEKSDIEKVKKPK------ 258 (488)
T ss_pred HHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccc--hhhccchhhhccCC------
Confidence 887652210 11245677888888888888888877776554433211111 00000000000000
Q ss_pred HHhhhhhccchhHHHHHHHHHhhhhhhhH-HHHHHH-HHHHhCCChhHHHHHHH----HHHhhhhhhhchhhhhh-hhhc
Q 011831 233 WMATKAVIKVPTFQIIVLQGIVGSLPWTA-MVFFTM-WFELIGFDHSSTAALLS----LFAIGCAVGSFLGGVVA-DRIS 305 (476)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~g~s~~~~g~~~~----~~~~~~~~~~~~~g~l~-dr~~ 305 (476)
+..+..+.+.+..+.....+.. .+..+. ....++++..++-...+ ..++..+.-.+...... .++.
T Consensus 259 -------~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~ 331 (488)
T KOG2325|consen 259 -------LDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKID 331 (488)
T ss_pred -------hhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 0011222222233333333333 233333 33346766655544333 33333332222222221 1212
Q ss_pred cccCCCcchhHhHHHHHhhhhHHHhhhh--cccc------C-------------------cchHHHHHHHHHHHHHHHHh
Q 011831 306 QAYPHSGRVMCAQFSAFMGIPFSWFLLT--AIPQ------S-------------------VSNYYTYAVTLVLMGLTISW 358 (476)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------~-------------------~~~~~~~~~~~~~~g~~~~~ 358 (476)
+|+.. . .+.+.......+... .... . .+.+.......+++|.+.-.
T Consensus 332 ~r~~~------~-~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~ 404 (488)
T KOG2325|consen 332 KRRII------L-LGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPF 404 (488)
T ss_pred cceee------e-ehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheecccccc
Confidence 23211 1 110111111100000 0000 0 00111122334455555544
Q ss_pred hhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 359 NATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 359 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
... ...+.-+|...++++++..|+.......+..++|.+...+....
T Consensus 405 ~~~-~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~ 451 (488)
T KOG2325|consen 405 IST-ALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLS 451 (488)
T ss_pred ccc-hHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhc
Confidence 444 56777889999999999999999999999999999888887774
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-15 Score=145.42 Aligned_cols=350 Identities=17% Similarity=0.170 Sum_probs=223.6
Q ss_pred hhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcC-----CchhHHHHHHHHHHHHHHHHhh----hhHHH
Q 011831 35 PSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYD-----RPAVLTIGILCWAFSTAAVGAS----QHFLH 105 (476)
Q Consensus 35 ~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G-----rr~~~~~~~~~~~~~~~~~~~~----~~~~~ 105 (476)
.+..+.+++++|+++++...+.+...+... ..++.|.++|.+. ||+-++++.++..++.+..+.. .+...
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~ 88 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI 88 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence 456788999999999999998888888876 5688999999863 5557777888776666666553 35666
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhhc--CCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHH
Q 011831 106 VGMWRAVNGFGLAIVIPALQSFIADSY--KDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATL 183 (476)
Q Consensus 106 l~~~r~l~G~~~~~~~~~~~~~i~~~~--~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~ 183 (476)
..+.-++..+|......++.+++.|.. .+++||...+.......+|.+++..++|.+.+. .++|+.|.+.+++
T Consensus 89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~-----~~~~~~f~i~~~~ 163 (433)
T PF03092_consen 89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS-----FGPQGVFLISAAL 163 (433)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc-----CCCeEEehHHHHH
Confidence 777778889999999999999999998 334478888898999999999999999999987 8899999999988
Q ss_pred HHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHH-HHHhhhhhhhHH
Q 011831 184 SVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVL-QGIVGSLPWTAM 262 (476)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 262 (476)
..+..+..+++.+|.+.....+ . ..... +.........++..+..++.++.|..+...+ ..++........
T Consensus 164 ~~l~~~~~~~~~~e~~~~~~~~-~--~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 235 (433)
T PF03092_consen 164 PLLMLIVALFLLEERKVRPADE-V--FSFGK-----EEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSIS 235 (433)
T ss_pred HHHHHHHHHHhhhhccccccch-h--hcccc-----cccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCC
Confidence 8888777777777622211110 0 00000 0000011113555566666777777776555 222222211111
Q ss_pred HHHHHHH--HHhC---CChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccc-
Q 011831 263 VFFTMWF--ELIG---FDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIP- 336 (476)
Q Consensus 263 ~~~~~~~--~~~g---~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 336 (476)
.-...|. ...+ +|+...+.+..+..++.++|..+......+..-|+. .... .++.......-.....
T Consensus 236 ~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~------~~~t-~~~~~~~~l~~~~lv~~ 308 (433)
T PF03092_consen 236 SASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRI------FVVT-TLVSVLASLFDLLLVTR 308 (433)
T ss_pred CccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH------HHHH-HHHHHHHhcccEEEEEE
Confidence 0000111 1244 888888888777777777777766655444444431 1111 1111111111000000
Q ss_pred ----c-CcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhh
Q 011831 337 ----Q-SVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMF 407 (476)
Q Consensus 337 ----~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~ 407 (476)
. -++.+..+ ..-.+.......... ....+++|..|+..-|+.+++..++.|+|..++..++..+.+..+
T Consensus 309 ~n~~~Gi~d~~f~l-gd~~l~~~~~~i~~m-P~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 309 WNLDLGIPDQWFAL-GDTILEEVIGMIAFM-PSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred EeeeeCcCCeEEEE-EhHHHHHHHHHHHHH-HHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 0 01111111 112223333333333 346788999999999999999999999999999999999988864
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.3e-15 Score=142.25 Aligned_cols=363 Identities=16% Similarity=0.196 Sum_probs=236.0
Q ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCC-chhHHHHHH----HHHHHhhhhhhhHhhhhcCCchhHHHHHHH
Q 011831 15 LSLILINLAAIMERADENLLPSVYKEVSEAFNAGPS-DLGYLTFIR----NFVQGLSSPLAGVLVINYDRPAVLTIGILC 89 (476)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~-~~g~~~s~~----~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~ 89 (476)
......++-.+..++.........+.....++.+.. ..+...... .+...+.++..|.++||+|||..+......
T Consensus 22 ~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~ 101 (463)
T KOG2816|consen 22 HLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFG 101 (463)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHH
Confidence 344445555555555555555666666666554333 233333333 577789999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhh--hhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhccc
Q 011831 90 WAFSTAAVGASQHFLHVGMWRAVNGFG--LAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQF 167 (476)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~r~l~G~~--~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~ 167 (476)
..+..++..+.. +|.++ +.|+. .+.......++++|....++|...+|+.+.....+..++|.+++.+...
T Consensus 102 ~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~-- 174 (463)
T KOG2816|consen 102 TILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKF-- 174 (463)
T ss_pred HHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh--
Confidence 988888887766 33333 44443 2445677789999999999999999999999999999999999999998
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHH
Q 011831 168 WGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQI 247 (476)
Q Consensus 168 ~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (476)
.|.-.+|.+..+..++..+..+...||+..++++..++..+... .........+..+..+..-.+|..+.
T Consensus 175 ---~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~r~~l~ 244 (463)
T KOG2816|consen 175 ---LGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTP-------GSLDSSHVADAFQSLTKVGPDRLLLL 244 (463)
T ss_pred ---cCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCC-------CcccchhhhhhhhhhcccCCCccchH
Confidence 89999999999999888888888888876655443110000000 00000011111222222223344444
Q ss_pred HHHHHHhhhh-hhhHHH-HHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhh-hhhhhhccccCCCcchhHhHHHHHh
Q 011831 248 IVLQGIVGSL-PWTAMV-FFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGG-VVADRISQAYPHSGRVMCAQFSAFM 323 (476)
Q Consensus 248 ~~~~~~~~~~-~~~~~~-~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g-~l~dr~~~~~~~~~~~~~~~~~~~~ 323 (476)
++...+.... ...... .++.|++. +|+++.+.+.+.+..+....++.++.. .+...++.|+. ..+
T Consensus 245 l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~-----------i~l 313 (463)
T KOG2816|consen 245 LLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRL-----------ISL 313 (463)
T ss_pred HHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-----------hhH
Confidence 4433333222 222222 33455665 899999999999999888888888777 66666777752 122
Q ss_pred hhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHH
Q 011831 324 GIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILS 403 (476)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~ 403 (476)
++..-.+...........|..+.. ..+.+ ......+ ...+......+++++|++.++...+..+.+.++|.+.+.+.
T Consensus 314 Gl~~~~~~~~~~af~~~~w~~~~~-~v~~~-~~~~~~p-a~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 314 GLLSEFLQLLLFAFATETWMMFAA-GVVVA-LAGIVFP-AIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred HHHHHHHHHHHHHHhccchhhhHH-HHHHH-hhcchhH-HHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 222222222222222232332322 22222 2233333 66888888899999999999999999999999999999987
Q ss_pred hhhhc
Q 011831 404 EKMFG 408 (476)
Q Consensus 404 ~~~~~ 408 (476)
..+-.
T Consensus 391 ~~t~~ 395 (463)
T KOG2816|consen 391 ALTLD 395 (463)
T ss_pred HHHHH
Confidence 77544
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.7e-16 Score=125.93 Aligned_cols=137 Identities=29% Similarity=0.455 Sum_probs=125.0
Q ss_pred HHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCC
Q 011831 56 TFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDG 135 (476)
Q Consensus 56 ~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 135 (476)
.+.+.++..++.++.|++.||+|||+.+..+.....++.++..+.++++.+.+.+++.|++.+...+...+++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 44567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhheeecc
Q 011831 136 VRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVD 197 (476)
Q Consensus 136 ~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~ 197 (476)
+|++.+++.+....+|..+++.+.+.+.+. .+|++.+++.++..++..+..++..||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQF-----LGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcc-----cchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999999887 899999999988887777777666554
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.9e-15 Score=143.28 Aligned_cols=168 Identities=14% Similarity=0.276 Sum_probs=138.9
Q ss_pred chhhHHHHHHhcCCCC--------CchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhh----
Q 011831 34 LPSVYKEVSEAFNAGP--------SDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQ---- 101 (476)
Q Consensus 34 ~~~~~~~i~~~~~~s~--------~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~---- 101 (476)
.....+...++.+.++ ++.+...++..++..++.++.|+++||+|+|+++..+.++.+++..+.....
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~ 306 (418)
T TIGR00889 227 TNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYF 306 (418)
T ss_pred HHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchh
Confidence 3344566666666443 5678999999999999999999999999999999999999998877776632
Q ss_pred hHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHH-hhhhhhhhhHHHHHHHHhhccc-CCCCchhHHHHH
Q 011831 102 HFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLS-LVGTMGGIGGGVLATIMAGHQF-WGVPGWRCAFIL 179 (476)
Q Consensus 102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~lG~~~g~~~~~~l~~~~~-~~~~~wr~~f~i 179 (476)
+++.+++.+++.|++.+...+....+++|++|+++|++++|+.+ ...++|.++||++++.+.+..+ ....||+..|.+
T Consensus 307 ~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~ 386 (418)
T TIGR00889 307 GYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLF 386 (418)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHH
Confidence 34667788999999999999999999999999999999999997 6789999999999999988621 111479999999
Q ss_pred HHHHHHHHHHHhheeeccCCCC
Q 011831 180 MATLSVLIAFLVLVFVVDPRKK 201 (476)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~ 201 (476)
.+++.++..++.+++.+|+...
T Consensus 387 ~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 387 FAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred HHHHHHHHHHHHHHHhCCcccC
Confidence 9999888888888887766433
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.1e-15 Score=141.54 Aligned_cols=153 Identities=13% Similarity=0.249 Sum_probs=134.3
Q ss_pred hcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhH
Q 011831 44 AFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPA 123 (476)
Q Consensus 44 ~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 123 (476)
+.+.+..+.|++.++..++..++.+++|++.||+|+|+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+.
T Consensus 256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~ 335 (420)
T PRK09528 256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVG 335 (420)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34566678899999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHhhhcCCCcchhhHHH-HHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCC
Q 011831 124 LQSFIADSYKDGVRGAGFGL-LSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKK 201 (476)
Q Consensus 124 ~~~~i~~~~~~~~r~~~~~~-~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~ 201 (476)
...++.|.+|++.|+...+. ++....+|.++++.+.+++.+. .|||..|.+.+++.++..++.++..++++++
T Consensus 336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~-----~G~~~~f~~~~~~~~i~~~~~~~~~~~~~~~ 409 (420)
T PRK09528 336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS-----IGFQGTYLILGGIVLLFTLISVFTLSGDREL 409 (420)
T ss_pred HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh-----hCchHHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 88999999999999988765 6778899999999999999997 8999999999888877776666665554443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.9e-14 Score=139.61 Aligned_cols=169 Identities=8% Similarity=-0.006 Sum_probs=126.1
Q ss_pred HhccchhhHHHHH-HhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHH---HHhhhhHHH
Q 011831 30 DENLLPSVYKEVS-EAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAA---VGASQHFLH 105 (476)
Q Consensus 30 ~~~~~~~~~~~i~-~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~---~~~~~~~~~ 105 (476)
..+.....+|.+. +++|.+..+.++..+...++..++.++.|+++||+|||+++..+.++..++... ...+++...
T Consensus 265 ~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (490)
T PRK10642 265 TYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGL 344 (490)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 3334444566654 567888888888888889999999999999999999999988887654443332 222345777
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHH
Q 011831 106 VGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSV 185 (476)
Q Consensus 106 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~ 185 (476)
+++++++.|++.+........++.|.+|++.|++++++......++..++|.+.+++.+. ..+|+.++++..++++
T Consensus 345 ~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~----~~~~~~~~~~~~~~~~ 420 (490)
T PRK10642 345 IFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVES----TQNLMMPAYYLMVVAV 420 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCchHHHHHHHHHHH
Confidence 888899999988877777888999999999999999975444556667889998888764 1357888777777777
Q ss_pred HHHHHhheeeccCCCCC
Q 011831 186 LIAFLVLVFVVDPRKKA 202 (476)
Q Consensus 186 ~~~~~~~~~~~~~~~~~ 202 (476)
+..+..++.+|+|++..
T Consensus 421 i~~~~~~~~pes~~~~~ 437 (490)
T PRK10642 421 IGLITGVTMKETANRPL 437 (490)
T ss_pred HHHHHHHHhccccCCCC
Confidence 66666666655555544
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.7e-14 Score=135.15 Aligned_cols=160 Identities=18% Similarity=0.113 Sum_probs=135.5
Q ss_pred cchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 011831 33 LLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAV 112 (476)
Q Consensus 33 ~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 112 (476)
.....++.+.++.|. .+.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++.+++
T Consensus 234 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (399)
T PRK05122 234 TIATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAAL 311 (399)
T ss_pred HHHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 334445555556665 345677788889999999999999999999999999999999988888888888888889999
Q ss_pred HHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhh
Q 011831 113 NGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVL 192 (476)
Q Consensus 113 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~ 192 (476)
.|++.+...+.....+.|.+|+++|+++.++++....+|..+++.+.+.+.+. .||++.|++.++..++..+..+
T Consensus 312 ~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-----~g~~~~~~~~~~~~~~~~~~~~ 386 (399)
T PRK05122 312 TGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW-----FGYPSIFLAAALAALLGLALTW 386 (399)
T ss_pred HHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888889999999999999999999999999999999999987 8999999998888777766666
Q ss_pred eeeccCC
Q 011831 193 VFVVDPR 199 (476)
Q Consensus 193 ~~~~~~~ 199 (476)
++.++++
T Consensus 387 ~~~~~~~ 393 (399)
T PRK05122 387 LLYRRAP 393 (399)
T ss_pred Hhccccc
Confidence 5554433
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.4e-14 Score=140.84 Aligned_cols=139 Identities=14% Similarity=0.132 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcC
Q 011831 54 YLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYK 133 (476)
Q Consensus 54 ~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 133 (476)
+...+..++..++.++.|+++||+|||++++.+.++.+++.++.+++++...+++.+++.|++.+...+...++++|++|
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~P 678 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYP 678 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33556678889999999999999999999999999999999999999888888888999999888899999999999999
Q ss_pred CCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhheeeccCC
Q 011831 134 DGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPR 199 (476)
Q Consensus 134 ~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~ 199 (476)
.++|++++|+.+....+|.+++|++++.+.+. +...+|++.++..++.+++.+++ ||++
T Consensus 679 t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~------~~~~pf~i~a~~lll~~ll~~~L-PET~ 737 (742)
T TIGR01299 679 SDKRATAFGFLNALCKAAAVLGILIFGSFVGI------TKAAPILFASAALACGGLLALKL-PDTR 737 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHHHhC-CCCc
Confidence 99999999999999999999999999988774 46778888888777766666655 4443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.8e-13 Score=129.84 Aligned_cols=154 Identities=13% Similarity=0.069 Sum_probs=128.4
Q ss_pred hhhHHH-HHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 011831 35 PSVYKE-VSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVN 113 (476)
Q Consensus 35 ~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 113 (476)
....|. +++++|.++.+.+++.+...++..++.++.|+++||+|||+.+..+.....+........++.+.+++.+++.
T Consensus 236 ~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 315 (393)
T PRK15011 236 IINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLN 315 (393)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344554 5567899999999998888888888999999999999999988887776666655556677888888899999
Q ss_pred HhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhhe
Q 011831 114 GFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLV 193 (476)
Q Consensus 114 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~ 193 (476)
+++.+...+....+..|..| ++|++++++++...++|..+++.+++.+.+. .+|+..|++.+++.++..++.++
T Consensus 316 ~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~-----~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 316 AIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEI-----WNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHh
Confidence 99888887778888899886 5699999999999999999999999999987 79999999988877766655554
Q ss_pred e
Q 011831 194 F 194 (476)
Q Consensus 194 ~ 194 (476)
.
T Consensus 390 ~ 390 (393)
T PRK15011 390 I 390 (393)
T ss_pred h
Confidence 4
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-12 Score=117.76 Aligned_cols=246 Identities=16% Similarity=0.157 Sum_probs=163.5
Q ss_pred cchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 011831 33 LLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAV 112 (476)
Q Consensus 33 ~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 112 (476)
..+|..-.+-+++|.+..|++.+.........+..++.|.++||+|||+..+.-+++.+++++ +-..++++.++++|++
T Consensus 52 LQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvl 130 (354)
T PF05631_consen 52 LQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVL 130 (354)
T ss_pred hhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHH
Confidence 345544455578999999999999999999999999999999999999999999999999986 4456899999999999
Q ss_pred HHhhhhhhhhHHHHHH-hhhcCC----CcchhhHHHHH-hhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Q 011831 113 NGFGLAIVIPALQSFI-ADSYKD----GVRGAGFGLLS-LVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVL 186 (476)
Q Consensus 113 ~G~~~~~~~~~~~~~i-~~~~~~----~~r~~~~~~~~-~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~ 186 (476)
.|++......+-.++. .|.-.. +..+..++... ..+++-.+++..++..+.+. ...|-..+|....++.++
T Consensus 131 gGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~---~~~g~vaPF~~a~~~l~~ 207 (354)
T PF05631_consen 131 GGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADW---FGFGPVAPFDAAIVLLAV 207 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHH---hCCCCcchHHHHHHHHHH
Confidence 9999999888877754 454322 22223233222 23334445566666666654 113447889888887777
Q ss_pred HHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHH-hhhhhhhHH-HH
Q 011831 187 IAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGI-VGSLPWTAM-VF 264 (476)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~ 264 (476)
..+++....+|...+..+. .+..++..+..+.+.++|..+.+.+... +-...|... .|
T Consensus 208 ~~~~I~~~W~ENyg~~~~~--------------------~~~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflW 267 (354)
T PF05631_consen 208 AAVLILKTWPENYGDTSSS--------------------SSLSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLW 267 (354)
T ss_pred HHHHHHhcccccCCCcccc--------------------cchHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeee
Confidence 7776665544433221111 0111333445556677777666555443 334444444 46
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhh
Q 011831 265 FTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRI 304 (476)
Q Consensus 265 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~ 304 (476)
.|..-.+ + ...--|++++...++.++|+.+..++..+.
T Consensus 268 tPaL~~~-~-~~~P~GlIFssFM~a~MlGS~lf~~l~s~~ 305 (354)
T PF05631_consen 268 TPALDPD-D-EELPLGLIFSSFMVAMMLGSSLFSRLLSKS 305 (354)
T ss_pred eceecCC-C-CCCCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6765421 1 123468899999999999998887655543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-13 Score=131.55 Aligned_cols=160 Identities=20% Similarity=0.158 Sum_probs=134.1
Q ss_pred cchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 011831 33 LLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAV 112 (476)
Q Consensus 33 ~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 112 (476)
......|.+.++.|.+..+.+.+.+...++..++.++.|++.||+|||+.+..+.+...++.++..+.++.+.+.+..++
T Consensus 238 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (406)
T PRK11551 238 FLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFA 317 (406)
T ss_pred HHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33445677888899999999999999999999999999999999999999888877777777777777888888888889
Q ss_pred HHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhh
Q 011831 113 NGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVL 192 (476)
Q Consensus 113 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~ 192 (476)
.|++.+...+...+++.|.+|+++|++..|+.+....+|..++|.+.+.+.+. ..+|...+++.....++..+..+
T Consensus 318 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~----~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 318 AGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLAL----GRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhcc----CCchHHHHHHHHHHHHHHHHHHH
Confidence 99988888888999999999999999999999999999999999999999875 14566777766666555555555
Q ss_pred eeec
Q 011831 193 VFVV 196 (476)
Q Consensus 193 ~~~~ 196 (476)
+..+
T Consensus 394 ~~~~ 397 (406)
T PRK11551 394 LLVS 397 (406)
T ss_pred HHhc
Confidence 4443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=130.48 Aligned_cols=165 Identities=23% Similarity=0.330 Sum_probs=147.1
Q ss_pred HHHHHHHhccchhhHHHHHHhc-CCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCch-hHHHHHHHHHHHHHHHHhhh
Q 011831 24 AIMERADENLLPSVYKEVSEAF-NAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPA-VLTIGILCWAFSTAAVGASQ 101 (476)
Q Consensus 24 ~~~~~~~~~~~~~~~~~i~~~~-~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~-~~~~~~~~~~~~~~~~~~~~ 101 (476)
.+.............|.+.++. |.++.+.++..+...++..++.++.|++.||+|||+ .+..+..+..++.++..+.+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 263 (352)
T cd06174 184 FFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP 263 (352)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444445555666666665 889999999999999999999999999999999999 99999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHH
Q 011831 102 HFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMA 181 (476)
Q Consensus 102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~ 181 (476)
+.+.+.+..++.|++.+...+...+++.|..|+++|++.+++.+...++|..+++.+.+.+.+. .+|+..+.+.+
T Consensus 264 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~-----~~~~~~~~~~~ 338 (352)
T cd06174 264 SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT-----GGYGGVFLILA 338 (352)
T ss_pred cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cCcchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986 89999999999
Q ss_pred HHHHHHHHHhhe
Q 011831 182 TLSVLIAFLVLV 193 (476)
Q Consensus 182 ~~~~~~~~~~~~ 193 (476)
++.++..+..++
T Consensus 339 ~~~~i~~i~~~~ 350 (352)
T cd06174 339 ALALLAALLLLL 350 (352)
T ss_pred HHHHHHHHHhee
Confidence 988777665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-13 Score=130.64 Aligned_cols=156 Identities=16% Similarity=0.111 Sum_probs=133.9
Q ss_pred cchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 011831 33 LLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAV 112 (476)
Q Consensus 33 ~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 112 (476)
......|.+.++.+.+ +.++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++..++
T Consensus 234 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (392)
T PRK12382 234 VIGTFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAAL 311 (392)
T ss_pred HHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 3444455555666654 45667777888889999999999999999999999999999998888888888888889999
Q ss_pred HHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhh
Q 011831 113 NGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVL 192 (476)
Q Consensus 113 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~ 192 (476)
.|++.+...+...+.+.|.+|+++|+++.++++....+|..++|.+.+.+.++ .||++.|.+.++..++..++.+
T Consensus 312 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~-----~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 312 TGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS-----FGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred HHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCchHHHHHHHHHHHHHHHHHH
Confidence 99999988888889999999999999999999999999999999999999997 8999999999988777766665
Q ss_pred eee
Q 011831 193 VFV 195 (476)
Q Consensus 193 ~~~ 195 (476)
+..
T Consensus 387 ~~~ 389 (392)
T PRK12382 387 LSF 389 (392)
T ss_pred hhc
Confidence 443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-13 Score=131.47 Aligned_cols=162 Identities=15% Similarity=0.150 Sum_probs=141.0
Q ss_pred chhhHHHHHHh-cCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 011831 34 LPSVYKEVSEA-FNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAV 112 (476)
Q Consensus 34 ~~~~~~~i~~~-~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 112 (476)
.....|.+.++ +|.++.+.|++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+.+.+..++
T Consensus 242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (417)
T PRK10489 242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLAL 321 (417)
T ss_pred HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 34456766666 89999999999999999999999999999999888888888888888888888888888888888999
Q ss_pred HHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhh
Q 011831 113 NGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVL 192 (476)
Q Consensus 113 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~ 192 (476)
.|++.+...+...+++.|..|+++|++++++++....+|..+|+.+.+.+.+. .|++..+++.+...++..++..
T Consensus 322 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~-----~g~~~~~~~~~~~~~~~~~~~~ 396 (417)
T PRK10489 322 FGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAM-----MTPVASASASGFGLLIIGVLLL 396 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH-----hchhhHHHHHHHHHHHHHHHHH
Confidence 99998888888889999999999999999999999999999999999999997 8999999988887777777766
Q ss_pred eeeccCCC
Q 011831 193 VFVVDPRK 200 (476)
Q Consensus 193 ~~~~~~~~ 200 (476)
...++.+.
T Consensus 397 ~~~~~~~~ 404 (417)
T PRK10489 397 LVLGELRR 404 (417)
T ss_pred Hhcccccc
Confidence 66555443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-13 Score=131.74 Aligned_cols=160 Identities=16% Similarity=0.246 Sum_probs=134.2
Q ss_pred cchhhHHHHHHhcCCCCCc----hhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 011831 33 LLPSVYKEVSEAFNAGPSD----LGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGM 108 (476)
Q Consensus 33 ~~~~~~~~i~~~~~~s~~~----~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 108 (476)
...+..+.+.++.+.+..+ .+.+.+...++..++.+..|++.||+|||+.+..+..+..++.+...+.++.+.+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (408)
T PRK09874 237 SIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGI 316 (408)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3445556555554333333 455667777888899999999999999999999999988888888888888888899
Q ss_pred HHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHH
Q 011831 109 WRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIA 188 (476)
Q Consensus 109 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~ 188 (476)
.+++.|++.+...+...+++.+..|+++|++.+++.+....+|..+||.+++.+.+. .||++.|++.+++.++..
T Consensus 317 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~-----~g~~~~f~~~~~~~l~~~ 391 (408)
T PRK09874 317 LRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN-----YGFRAVFLVTAGVVLFNA 391 (408)
T ss_pred HHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh-----cchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987 899999999999888777
Q ss_pred HHhheeecc
Q 011831 189 FLVLVFVVD 197 (476)
Q Consensus 189 ~~~~~~~~~ 197 (476)
+..++..++
T Consensus 392 ~~~~~~~~~ 400 (408)
T PRK09874 392 VYSWNSLRR 400 (408)
T ss_pred HHHHHHHHH
Confidence 766654433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=131.99 Aligned_cols=149 Identities=20% Similarity=0.237 Sum_probs=129.1
Q ss_pred chhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhH--HHHHHHHH
Q 011831 34 LPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHF--LHVGMWRA 111 (476)
Q Consensus 34 ~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~ 111 (476)
.....+.+.++++.++.+.+++.+.+.++..+++++.|++.||+|||+.+..+.++..++.++..+.++. ..++...+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (377)
T TIGR00890 224 LIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVA 303 (377)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 3344566778889888889999999999999999999999999999999999999999988887776643 33456678
Q ss_pred HHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHH
Q 011831 112 VNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLI 187 (476)
Q Consensus 112 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~ 187 (476)
+.|++.+...+..+.++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+. .||++.|.+.+++.++.
T Consensus 304 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-----~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 304 LVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE-----IGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh-----hchhhHHHHHHHHHHHh
Confidence 888888888888889999999999999999999999999999999999999987 89999999988776553
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.8e-13 Score=127.15 Aligned_cols=165 Identities=16% Similarity=0.046 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHH
Q 011831 19 LINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVG 98 (476)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~ 98 (476)
...+..++.......+....|.+.+|+|.++.+.|++.+...++..+..++.+++.||+|+|+.+.++.+...+..++.+
T Consensus 209 ~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~ 288 (382)
T TIGR00902 209 RFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIG 288 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555566767778999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHH-hhhhhhhhhHHHHHHHHhhcccCCCCchhHHH
Q 011831 99 ASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLS-LVGTMGGIGGGVLATIMAGHQFWGVPGWRCAF 177 (476)
Q Consensus 99 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f 177 (476)
++++.+.+++.+++.|+..+...+....++.+. |+++|++..++++ ...++|.++++.++|++.++ .|+ ..|
T Consensus 289 ~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~-----~g~-~~~ 361 (382)
T TIGR00902 289 AIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT-----LGA-GTF 361 (382)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccH-HHH
Confidence 999999999999999999999999999999998 9999999999986 57889999999999999998 786 667
Q ss_pred HHHHHHHHHHHHH
Q 011831 178 ILMATLSVLIAFL 190 (476)
Q Consensus 178 ~i~~~~~~~~~~~ 190 (476)
++.+.+.++..++
T Consensus 362 ~~~~~~~~~~~~~ 374 (382)
T TIGR00902 362 VFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777655443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.7e-12 Score=115.19 Aligned_cols=346 Identities=10% Similarity=0.050 Sum_probs=228.5
Q ss_pred cchhhHHHHHHh-cCCCCCchh-HHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 011831 33 LLPSVYKEVSEA-FNAGPSDLG-YLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWR 110 (476)
Q Consensus 33 ~~~~~~~~i~~~-~~~s~~~~g-~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 110 (476)
.-+...|.+.+. .|++..|+. -+.-...-.+....++...+.|..+.|++++++.+...+...+.-+.++...+-+..
T Consensus 22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q 101 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQ 101 (412)
T ss_pred CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHH
Confidence 334555666665 788877764 455555666778889999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHH
Q 011831 111 AVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFL 190 (476)
Q Consensus 111 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~ 190 (476)
+.-|++.+. ..+-.+++-...|+++-.++.+...+..-+|..++..+|..+... +..+++....+......+..++
T Consensus 102 ~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~---~~~sy~~L~~isl~~~~~a~~~ 177 (412)
T PF01770_consen 102 FFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF---GGVSYFQLNYISLASVSLALLI 177 (412)
T ss_pred HHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHH
Confidence 999999775 567789999999999999999999999999999999999998874 2356777777766655555555
Q ss_pred hheeeccCCCCCCCccC---------CCCCCCh--hhH------hhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHH
Q 011831 191 VLVFVVDPRKKASTFHG---------TGENFDR--DEL------VEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGI 253 (476)
Q Consensus 191 ~~~~~~~~~~~~~~~~~---------~~~~~~~--~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (476)
.+++++.++...-+++. +.++.+. ++. ........+...+..+++.++..++|.++...+...
T Consensus 178 ~~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa 257 (412)
T PF01770_consen 178 ALFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWA 257 (412)
T ss_pred HHHcCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 55555433321111100 0000000 000 000111122334556677788888999988888887
Q ss_pred hhhhhhhHH-HHHHHHHHHh---CCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHH
Q 011831 254 VGSLPWTAM-VFFTMWFELI---GFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSW 329 (476)
Q Consensus 254 ~~~~~~~~~-~~~~~~~~~~---g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (476)
+..+.+... +|.....++. +-+..-.|.+-+...+.+.++.+..|++..++.+... +.+...+.+. .
T Consensus 258 ~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~----l~l~~~S~l~-----a 328 (412)
T PF01770_consen 258 FATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGE----LALGVFSLLQ-----A 328 (412)
T ss_pred HHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHH----HHHHHHHHHH-----H
Confidence 777766666 6665555554 3444556778888888888888888888544444321 1111211111 1
Q ss_pred hhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhh
Q 011831 330 FLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSS 393 (476)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~ 393 (476)
.+++.+...++.|. ..+..++++.......+ +...-++.....+.-|...|++..+.-+...
T Consensus 329 ~~L~lm~~t~~Iwv-~Y~~yIif~~~y~fliT-iA~~qIA~~l~~e~yaLVFGiNtf~Al~LQt 390 (412)
T PF01770_consen 329 GLLFLMSFTGNIWV-CYAGYIIFRSLYMFLIT-IASFQIAKNLSEERYALVFGINTFVALVLQT 390 (412)
T ss_pred HHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHhccccceeeeeeeHHHHHHHHHH
Confidence 22222333444344 44555556655665555 5556666667778888888888766554333
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-13 Score=135.94 Aligned_cols=148 Identities=15% Similarity=0.172 Sum_probs=117.5
Q ss_pred chhhHHHHH-HhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhh--hhHHHHHHHH
Q 011831 34 LPSVYKEVS-EAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGAS--QHFLHVGMWR 110 (476)
Q Consensus 34 ~~~~~~~i~-~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r 110 (476)
....+|.+. +++|.+..+.+++.+...++..++.++.|+++||+|||+++..+.++..+..++.... .+.+.+.+..
T Consensus 294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (496)
T PRK03893 294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLL 373 (496)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 345567766 5889999999999999999999999999999999999999888887777665544432 3444444555
Q ss_pred HHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Q 011831 111 AVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVL 186 (476)
Q Consensus 111 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~ 186 (476)
++.+.......+...+++.|.+|+++|++.+++......+|..+||.+++.+.+. .||+..+...+....+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~-----~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 374 FFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQR-----LDLGTALASLSFSLTF 444 (496)
T ss_pred HHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhcc-----CChHHHHHHHHHHHHH
Confidence 5555444444566778899999999999999999999999999999999999987 8999888665544433
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.2e-14 Score=135.46 Aligned_cols=164 Identities=12% Similarity=0.097 Sum_probs=132.4
Q ss_pred HHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhc--CCchhHH--HHHHHHHHHHHH
Q 011831 21 NLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINY--DRPAVLT--IGILCWAFSTAA 96 (476)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~--Grr~~~~--~~~~~~~~~~~~ 96 (476)
....++...........+|.+.+++|.+..+.+++.+...++..+++++.|+++||. ++|+... .+.++.+++.++
T Consensus 247 ~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll 326 (455)
T TIGR00892 247 LSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLL 326 (455)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445566777788999999999999999999999999999999984 3443333 334444555566
Q ss_pred HHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCC-chhH
Q 011831 97 VGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVP-GWRC 175 (476)
Q Consensus 97 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~-~wr~ 175 (476)
....++++.+++.+++.|++.+...+...+++.|.+|++++++.+++++...++|..+||.+++.+.+. . +|++
T Consensus 327 ~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~-----~g~~~~ 401 (455)
T TIGR00892 327 CALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDA-----TKNYKY 401 (455)
T ss_pred HHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehh-----cCCcch
Confidence 677889999999999999999999999999999999999999999999999999999999999999876 4 6999
Q ss_pred HHHHHHHHHHHHHH
Q 011831 176 AFILMATLSVLIAF 189 (476)
Q Consensus 176 ~f~i~~~~~~~~~~ 189 (476)
.|++.+++.++..+
T Consensus 402 ~f~~~~~~~li~~~ 415 (455)
T TIGR00892 402 IFYASGSIVVSAGL 415 (455)
T ss_pred HHHHhhHHHHHHHH
Confidence 99998887665544
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-12 Score=124.28 Aligned_cols=148 Identities=15% Similarity=0.167 Sum_probs=127.5
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhh
Q 011831 40 EVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAI 119 (476)
Q Consensus 40 ~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 119 (476)
.+.+++|.++.+.+++.+.......++.++.|++.||+|||+++..+.+...+......+.++.+.+++.+++.|++.+.
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 304 (375)
T TIGR00899 225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI 304 (375)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577899999999988888777888899999999999999999888877777666666778888888899999999998
Q ss_pred hhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhhe
Q 011831 120 VIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLV 193 (476)
Q Consensus 120 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~ 193 (476)
..+....++.|..|+ ++++++++++...++|..++|.+++.+.+. .||+..|++.++..++..++..+
T Consensus 305 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 305 LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAER-----WSYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccchhHHHHHHHHHHHHHHHHhe
Confidence 888888999998864 667999999999999999999999999987 89999999998887666665544
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-12 Score=125.39 Aligned_cols=152 Identities=14% Similarity=0.090 Sum_probs=127.0
Q ss_pred hhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 011831 35 PSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNG 114 (476)
Q Consensus 35 ~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 114 (476)
...+|.+.++.|.++++.+++.+...++..+++++.|++.||+|+|+++..+..+..++.+... + ........++.|
T Consensus 220 ~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g 296 (381)
T PRK03633 220 YGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILG 296 (381)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHH
Confidence 3456777788899999999999999999999999999999999999999888888777665443 2 233445677888
Q ss_pred hhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhhee
Q 011831 115 FGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVF 194 (476)
Q Consensus 115 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~ 194 (476)
++.....|...+.+.|..|+++++...+......++|..+||.+++++.++ .+|++.|.+.+.+.++..+..++.
T Consensus 297 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~-----~g~~~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 297 AAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQN-----YSDNLLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred HHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCccHHHHHHHHHHHHHHHHHHhc
Confidence 887778899999999999888888888888899999999999999999998 899999999888877665554443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.9e-13 Score=130.08 Aligned_cols=176 Identities=12% Similarity=-0.034 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHhccchhhHHH-HHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHH
Q 011831 17 LILINLAAIMERADENLLPSVYKE-VSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTA 95 (476)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~ 95 (476)
+..+++..++............|. +.+++|.+..+.++..+...++..++.+++|+++||+|||+.+.....+..++..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~ 339 (467)
T PRK09556 260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFT 339 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence 344445555544444444555664 5567899999999999999999999999999999999999987666554444332
Q ss_pred H--HHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhh-hhhhHHHHHHHHhhc-c-----
Q 011831 96 A--VGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTM-GGIGGGVLATIMAGH-Q----- 166 (476)
Q Consensus 96 ~--~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~l-G~~~g~~~~~~l~~~-~----- 166 (476)
+ ....++.+.+.+.+++.|++.............|.+|+++||++.|+.+...++ |..++|.+.|.+.+. .
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~ 419 (467)
T PRK09556 340 LGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPI 419 (467)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccc
Confidence 2 223456666777888888654444333346777999999999999999988886 779999999999981 0
Q ss_pred -cCCCCchhHHHHHHHHHHHHHHHHhh
Q 011831 167 -FWGVPGWRCAFILMATLSVLIAFLVL 192 (476)
Q Consensus 167 -~~~~~~wr~~f~i~~~~~~~~~~~~~ 192 (476)
.....+|+..|++.++..++..+..+
T Consensus 420 ~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 420 FGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred ccccccChHHHHHHHHHHHHHHHHHHH
Confidence 00126799999998777666555444
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.9e-13 Score=130.47 Aligned_cols=180 Identities=16% Similarity=0.106 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHH
Q 011831 16 SLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTA 95 (476)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~ 95 (476)
.+....+..+.............|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+.++.+++.+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 364 (481)
T TIGR00879 285 LFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLF 364 (481)
T ss_pred HHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 33334444444444444455667888899999998889999999999999999999999999999999999888888877
Q ss_pred HHHhh-----h------hHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhh
Q 011831 96 AVGAS-----Q------HFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAG 164 (476)
Q Consensus 96 ~~~~~-----~------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~ 164 (476)
+.++. + +...+....++.+.......+....++.|.+|+++|++++++.+...++|.+++|.+.+.+.+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~ 444 (481)
T TIGR00879 365 VLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE 444 (481)
T ss_pred HHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76631 1 222333333333333333446667788999999999999999999999999999999999988
Q ss_pred cccCCCCchhHHHHHHHHHHHHHHHHhheeeccCCC
Q 011831 165 HQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRK 200 (476)
Q Consensus 165 ~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~ 200 (476)
. .+|++.|++.++++++..++.+++.+|+++
T Consensus 445 ~-----~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~ 475 (481)
T TIGR00879 445 S-----IGVGGVFIFFGGLNVLGLIFVYFFLPETKG 475 (481)
T ss_pred h-----cCccceehhHHHHHHHHHHHHheecccCCC
Confidence 7 799999999999888888887777766553
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-10 Score=109.25 Aligned_cols=371 Identities=12% Similarity=0.085 Sum_probs=220.2
Q ss_pred HHHHHHHHHHHHHHHhccchhhHHHHHHhcCC-CCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHH
Q 011831 16 SLILINLAAIMERADENLLPSVYKEVSEAFNA-GPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFST 94 (476)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~ 94 (476)
....++..+++...+.-++.+..+.+..+..- +---.+...-.-.+...+.++..|.+.||..|.++...+.+.--++.
T Consensus 3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv 82 (432)
T PF06963_consen 3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSV 82 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHH
Confidence 34567888899989888999999988888742 22223333344455677888999999999999999887766554444
Q ss_pred HHHHhh--------h----hHHH---HHHHHHHHHhhhhhh-hhHHHHHHhhhc------CCCcchhhHHHHHhhhhhhh
Q 011831 95 AAVGAS--------Q----HFLH---VGMWRAVNGFGLAIV-IPALQSFIADSY------KDGVRGAGFGLLSLVGTMGG 152 (476)
Q Consensus 95 ~~~~~~--------~----~~~~---l~~~r~l~G~~~~~~-~~~~~~~i~~~~------~~~~r~~~~~~~~~~~~lG~ 152 (476)
.+.+.. + +-+. +++.-.+.|.-.-.. .....+.=.||. +++.+.+.++...-.-.+..
T Consensus 83 ~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ck 162 (432)
T PF06963_consen 83 AASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCK 162 (432)
T ss_pred HHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHH
Confidence 333221 1 0111 122222222211111 111122223442 34556677777777778899
Q ss_pred hhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhheeec----cCCCCCCCccCCCCCCChhhHhhhcCCcc---
Q 011831 153 IGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVV----DPRKKASTFHGTGENFDRDELVEKGNTSV--- 225 (476)
Q Consensus 153 ~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 225 (476)
+++|++.|.+.+. .+.+....+.++..++..++=+++.. +.|....++++++++...+....+++...
T Consensus 163 llaPl~vG~l~t~-----~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (432)
T PF06963_consen 163 LLAPLFVGLLMTF-----ASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESSSDPSI 237 (432)
T ss_pred HHHHHHHHHHhhc-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccccccccccccchhhH
Confidence 9999999999987 78888888888887777665554432 22222222211111111111101111111
Q ss_pred ----chhHHHHHHhhhhhccchhHHHHHHHHHhhhhhhhHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhh
Q 011831 226 ----SSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVA 301 (476)
Q Consensus 226 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~ 301 (476)
....++..+.++..++++.+...+...+......+.-..+..|+.+.|+++...|..-....+.++.+.++..++.
T Consensus 238 ~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~ 317 (432)
T PF06963_consen 238 LKRLWNPLRTIIRGWRTYFRQPVFLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLM 317 (432)
T ss_pred HHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122333445666777888777766666655544444567888888999999999999999999999999999999
Q ss_pred hhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCc---chHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchh
Q 011831 302 DRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSV---SNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRT 378 (476)
Q Consensus 302 dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g 378 (476)
+|+|..|.- .+. ...-..++..+...++ .+..+ .....+......-=+|. +.+-....-+++|..|+++||
T Consensus 318 ~riGlvr~G---~~~-l~~q~~~L~~~v~~~~-~~~~~~~~~s~~~l~~gi~~SR~GL-W~fDL~~~qi~Qe~V~~~~Rg 391 (432)
T PF06963_consen 318 KRIGLVRAG---LWS-LWWQWVCLALCVVSFW-APGSPFSSISAYLLLGGIALSRIGL-WSFDLAVTQIMQENVPESERG 391 (432)
T ss_pred HHhcchhhH---HHH-HHHHHHHHHHHHHHHh-cCCCCchhhHHHHHHHHHHHHHHHH-HhhhHHHHHhhcccCCHHHhh
Confidence 999987742 111 1112222222222222 22222 11122222222222222 222224567889999999999
Q ss_pred hHHHHHHhhhhhhhhhhhH
Q 011831 379 MIYAFDRAFEGSFSSFAAP 397 (476)
Q Consensus 379 ~~~g~~~~~~~~~~~~~~~ 397 (476)
+.+|.-+..+++...+.-.
T Consensus 392 ~v~gvq~sl~~lf~ll~~~ 410 (432)
T PF06963_consen 392 AVSGVQNSLQSLFELLSFV 410 (432)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999998876654433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.5e-12 Score=123.28 Aligned_cols=153 Identities=14% Similarity=0.044 Sum_probs=126.0
Q ss_pred hHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHh
Q 011831 37 VYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFST-AAVGASQHFLHVGMWRAVNGF 115 (476)
Q Consensus 37 ~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~r~l~G~ 115 (476)
..|.+.+++|.+..+.+++.+...++..+++++.|+++||+|||+... +..+..++. .+....++.+.+++..++.|+
T Consensus 228 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~ 306 (390)
T PRK03545 228 IEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGI 306 (390)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 345556668999999999999999999999999999999999887544 444444443 344556778888888999999
Q ss_pred hhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhheee
Q 011831 116 GLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFV 195 (476)
Q Consensus 116 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~ 195 (476)
+.+...+...+.+.+..| ++|++++++++....+|..+||++++.+.+. .|++..|++.+++.++..+..+...
T Consensus 307 ~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 307 AIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLH-----LGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cChhHHHHHHHHHHHHHHHHHHHHc
Confidence 988777878888888875 6899999999999999999999999999998 8999999999988877777666655
Q ss_pred c
Q 011831 196 V 196 (476)
Q Consensus 196 ~ 196 (476)
+
T Consensus 381 ~ 381 (390)
T PRK03545 381 R 381 (390)
T ss_pred c
Confidence 4
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-12 Score=124.59 Aligned_cols=170 Identities=14% Similarity=0.071 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHhccchhhHHHHH-HhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHH
Q 011831 20 INLAAIMERADENLLPSVYKEVS-EAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVG 98 (476)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~i~-~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~ 98 (476)
+.+..++.......+....|.+. +++|.+..+.+++.+.+.++..++.++.|+++||++||+.+.....+..+...+..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~ 289 (394)
T PRK03699 210 LAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFV 289 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Confidence 33333443333334445566655 66899999999999999999999999999999999999999888888777777777
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHH
Q 011831 99 ASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFI 178 (476)
Q Consensus 99 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~ 178 (476)
..++.+.+.+..++.|++.+...+...++..|..| +++++..+.......+|..++|.+.+.+.+. .||+..++
T Consensus 290 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~-----~g~~~~~~ 363 (394)
T PRK03699 290 NTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAH-----FGLQAALL 363 (394)
T ss_pred HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHH-----hCchhhhh
Confidence 77787777777889999888888888888888774 5578888999899999999999999999987 89999999
Q ss_pred HHHHHHHHHHHHhheee
Q 011831 179 LMATLSVLIAFLVLVFV 195 (476)
Q Consensus 179 i~~~~~~~~~~~~~~~~ 195 (476)
+.+++.++..+......
T Consensus 364 ~~~~~~~~~~~~~~~~~ 380 (394)
T PRK03699 364 TANGLYAVVFVMCILLG 380 (394)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 98888777766555444
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.6e-12 Score=120.27 Aligned_cols=171 Identities=13% Similarity=0.087 Sum_probs=131.7
Q ss_pred HHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhh-h
Q 011831 24 AIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQ-H 102 (476)
Q Consensus 24 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-~ 102 (476)
.+.............|.+.+++|.+..+.|+..+.+.++..++.++.|++.||+|||+.+..+..+..++..+....+ +
T Consensus 214 ~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~ 293 (393)
T PRK09705 214 FGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQ 293 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccch
Confidence 333333434445556777778899999999999999999999999999999999999999988888777776654333 2
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHhhhcC-CCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHH
Q 011831 103 FLHVGMWRAVNGFGLAIVIPALQSFIADSYK-DGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMA 181 (476)
Q Consensus 103 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~ 181 (476)
...+ .-++.|++.+...+.......+..+ +++|++.+++.+....++..++|.+.+++.+.. .+|+..|.+.+
T Consensus 294 ~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~----g~~~~~~~~~~ 367 (393)
T PRK09705 294 LPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS----GNYLMDWAFHA 367 (393)
T ss_pred HHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCchHHHHHHH
Confidence 2222 2346788888888877777777775 578999999999999999999999999999871 24888888888
Q ss_pred HHHHHHHHHhheeeccCCC
Q 011831 182 TLSVLIAFLVLVFVVDPRK 200 (476)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~ 200 (476)
+.+++..+....+.+|++.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~ 386 (393)
T PRK09705 368 LCVVGLMIITLRFAPARFP 386 (393)
T ss_pred HHHHHHHHHHHHhcccccc
Confidence 8777766666666665443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.3e-12 Score=119.72 Aligned_cols=168 Identities=15% Similarity=0.095 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHH-HHHHHHHHHHHHH
Q 011831 19 LINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLT-IGILCWAFSTAAV 97 (476)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~-~~~~~~~~~~~~~ 97 (476)
...+..++............|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l 305 (402)
T TIGR00897 226 LGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLAL 305 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Confidence 333444444444444556678888889999999999999999999999999999999999998764 3334444443333
Q ss_pred Hh-----hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCc
Q 011831 98 GA-----SQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPG 172 (476)
Q Consensus 98 ~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~ 172 (476)
.+ .++.+.+++..++.|++.+...+. ...+.|.. |++|++++|+.+....+|..++|.+++.+.+. .|
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~-----~g 378 (402)
T TIGR00897 306 YYIPQHFGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGF-----FG 378 (402)
T ss_pred HHHHHccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cc
Confidence 32 245667777888999988876554 56667764 56899999999999999999999999999987 89
Q ss_pred hhHHHHHHHHHHHHHHHHhhe
Q 011831 173 WRCAFILMATLSVLIAFLVLV 193 (476)
Q Consensus 173 wr~~f~i~~~~~~~~~~~~~~ 193 (476)
|+..+++.++..++..++..+
T Consensus 379 ~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 379 AIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887776666554
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.9e-12 Score=121.44 Aligned_cols=162 Identities=17% Similarity=0.150 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHhccchhhHHHHH-HhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHH--
Q 011831 18 ILINLAAIMERADENLLPSVYKEVS-EAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFST-- 94 (476)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~-- 94 (476)
.......+.............|.+. +++|.+..+.+++.+...++..++.++.|+++||+|||+.+.....+..+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 301 (394)
T TIGR00883 222 LLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVP 301 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 3334444444444444555566655 6789999999999999999999999999999999999998775554444333
Q ss_pred HHHHh--hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHH-HHhhhhhhhhhHHHHHHHHhhcccCCCC
Q 011831 95 AAVGA--SQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGL-LSLVGTMGGIGGGVLATIMAGHQFWGVP 171 (476)
Q Consensus 95 ~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~lG~~~g~~~~~~l~~~~~~~~~ 171 (476)
....+ .++.+.+....++.|++.+...+...+++.|.+|+++|++++++ .+....+|..++|.+++.+.+. .
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~-----~ 376 (394)
T TIGR00883 302 LLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM-----T 376 (394)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHH-----c
Confidence 22222 24667777788999999989999999999999999999999998 4566778999999999999987 6
Q ss_pred c-hhHHHHHHHHHH
Q 011831 172 G-WRCAFILMATLS 184 (476)
Q Consensus 172 ~-wr~~f~i~~~~~ 184 (476)
| |++.++......
T Consensus 377 g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 377 GDWYAIGYYLAALA 390 (394)
T ss_pred CcchhHHHHHHHHH
Confidence 6 888877766544
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.3e-12 Score=122.32 Aligned_cols=149 Identities=13% Similarity=0.104 Sum_probs=104.3
Q ss_pred hhHHHHHHHHHhhhhhhhH-HHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHH
Q 011831 243 PTFQIIVLQGIVGSLPWTA-MVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFS 320 (476)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 320 (476)
|.++.+.+..++....+.. ..++|.|+++ +|+|+.+.|+..+...++.++++++.|+++||+|+|+.. ..+
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~-------~~~ 79 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYM-------LLA 79 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhH-------HHH
Confidence 3345555555555555444 4788998875 899999999999999999999999999999999998732 111
Q ss_pred HHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHH
Q 011831 321 AFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVG 400 (476)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g 400 (476)
........ +. ....++. ....+...+.|.+.+...+ ...++..|..|+++|+++.|+.+...++|..++|.+.+
T Consensus 80 ~~~~~~~~-~~---~~~~~~~-~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~ 153 (395)
T PRK10054 80 ITAFASGF-IA---IPLVNNV-TLVVLFFALINCAYSVFST-VLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGT 153 (395)
T ss_pred HHHHHHHH-HH---HHHHhHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 11 1112222 2233334455555554444 56788899999999999999999999999999999999
Q ss_pred HHHh
Q 011831 401 ILSE 404 (476)
Q Consensus 401 ~l~~ 404 (476)
.+.+
T Consensus 154 ~l~~ 157 (395)
T PRK10054 154 LLVM 157 (395)
T ss_pred HHHH
Confidence 9875
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.4e-12 Score=123.18 Aligned_cols=132 Identities=17% Similarity=0.213 Sum_probs=99.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcch
Q 011831 262 MVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSN 341 (476)
Q Consensus 262 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (476)
..++|.+.+++|+|+.+.+.+.+...++..+++++.|++.||+|+|+.. ..+.++... ........++
T Consensus 43 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~-------~~~~~~~~~----~~~~~~~~~~- 110 (434)
T PRK11663 43 NAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFM-------GIGLIATGI----INILFGFSSS- 110 (434)
T ss_pred HHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhH-------HHHHHHHHH----HHHHHHHHhH-
Confidence 3568888889999999999999999999999999999999999999732 111211111 1111111222
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 342 YYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 342 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
...+.+..++.|++.+...+ ....++.|.+|+++|++++|+.+...++|..++|.+.+++.+..
T Consensus 111 ~~~l~~~~~l~g~~~g~~~~-~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 174 (434)
T PRK11663 111 LWAFALLWVLNAFFQGWGWP-VCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY 174 (434)
T ss_pred HHHHHHHHHHHHHHHHccch-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 23344455567777776666 66788999999999999999999999999999999999998763
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=8e-12 Score=121.57 Aligned_cols=135 Identities=16% Similarity=0.137 Sum_probs=93.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHH
Q 011831 265 FTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYT 344 (476)
Q Consensus 265 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (476)
.| ++++.|+|+.+.+...+...++..++.++.|+++||+|||+.. . .+..+..... +.....+...+....
T Consensus 50 ~p-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~------~-~~~~~~~~~~-~~~~~~~~~~~~~~~ 120 (438)
T TIGR00712 50 MP-YLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFL------P-AGLILSAAVM-LLMGFVPWATSSIAI 120 (438)
T ss_pred hH-HHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceeh------H-HHHHHHHHHH-HHHhccccccchHHH
Confidence 44 4556799999999999999999999999999999999998742 1 1111111111 111111111122333
Q ss_pred HHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhhcC
Q 011831 345 YAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGY 409 (476)
Q Consensus 345 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~ 409 (476)
+.+..++.|++.+...+ .....+.|.+|+++|++++|+.+...++++.++|.+.+...+...+|
T Consensus 121 l~~~~~l~g~~~g~~~~-~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w 184 (438)
T TIGR00712 121 MFVLLFLNGWFQGMGWP-PCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDW 184 (438)
T ss_pred HHHHHHHHHHHhhcchH-HHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhh
Confidence 44556667777776655 55677889999999999999999999999999998887766543333
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.8e-11 Score=118.20 Aligned_cols=156 Identities=21% Similarity=0.195 Sum_probs=140.2
Q ss_pred cchhhHHHHH-HhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 011831 33 LLPSVYKEVS-EAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRA 111 (476)
Q Consensus 33 ~~~~~~~~i~-~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 111 (476)
.+...+|.+. +++|.++..+|++.+.+.+|..++++..+++.+|+++++.+..+.+.++++.+..+++++.+..++.-+
T Consensus 236 a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~ 315 (524)
T PF05977_consen 236 AVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALF 315 (524)
T ss_pred HHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3445677766 457999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHh
Q 011831 112 VNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLV 191 (476)
Q Consensus 112 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~ 191 (476)
+.|++.....+...+.+.+..|++.|||.++++++....+..+|..+.|.+.+. .|-+..+.+.++..++..++.
T Consensus 316 l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~-----~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 316 LAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH-----FGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 899999988877655555554
Q ss_pred he
Q 011831 192 LV 193 (476)
Q Consensus 192 ~~ 193 (476)
..
T Consensus 391 ~~ 392 (524)
T PF05977_consen 391 LR 392 (524)
T ss_pred HH
Confidence 43
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.1e-10 Score=106.01 Aligned_cols=325 Identities=15% Similarity=0.136 Sum_probs=196.4
Q ss_pred hhHH-HHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhh
Q 011831 52 LGYL-TFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIAD 130 (476)
Q Consensus 52 ~g~~-~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 130 (476)
.|+. .++-+....++.++.+.+.|+.|.|+.++++...+....+..-+ +|-+-+++...+.|+|.+..+..--.+++|
T Consensus 51 aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~ 129 (461)
T KOG3098|consen 51 AGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTS 129 (461)
T ss_pred ccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhh
Confidence 3443 67777888899999999999999999999999998887776655 456667888899999999999999999999
Q ss_pred hcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhccc---CCCCchh-H----------HHHHHHHHHHHHHH--Hhhee
Q 011831 131 SYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQF---WGVPGWR-C----------AFILMATLSVLIAF--LVLVF 194 (476)
Q Consensus 131 ~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~---~~~~~wr-~----------~f~i~~~~~~~~~~--~~~~~ 194 (476)
..+++++.+..++..+....+.++|..+-..+..... ....+-+ . ...+.+++..+..+ .....
T Consensus 130 ~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~ 209 (461)
T KOG3098|consen 130 NSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDF 209 (461)
T ss_pred cCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheee
Confidence 9999999999999999999998888777665554321 0011111 1 11111111111111 11111
Q ss_pred eccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhhhhhHH-HHHHHHHH---
Q 011831 195 VVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAM-VFFTMWFE--- 270 (476)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--- 270 (476)
.|++......+ .. + ....+..+..-++++++....+...++......... ...|..+.
T Consensus 210 ~p~~~~~~~~~--------------~~---~-~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~ 271 (461)
T KOG3098|consen 210 LPSKDVVNCKS--------------SS---E-TSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTR 271 (461)
T ss_pred cCccchhhhhh--------------hc---c-ccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhh
Confidence 11111111110 00 0 122333344445566666666555555443333322 33444332
Q ss_pred HhCCCh-hHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCc----------
Q 011831 271 LIGFDH-SSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSV---------- 339 (476)
Q Consensus 271 ~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 339 (476)
..+.+. ...+......+++.+.+....+.+.+|.++... ...+..+..+......+.....+...
T Consensus 272 ~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~----~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~ 347 (461)
T KOG3098|consen 272 KLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGR----KPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPL 347 (461)
T ss_pred hccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc----CcchhHHHHHHHHHHHHHhccccccCCCCCCccccc
Confidence 233332 333445556677777777777777777644322 12333333333333333333333211
Q ss_pred ---chHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHH
Q 011831 340 ---SNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGI 401 (476)
Q Consensus 340 ---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~ 401 (476)
.......+..++.|++-+.... ..+.+++...| ++|..+.++...-..+...++-...+.
T Consensus 348 ~~~~~~~~~~ii~~l~G~~D~~~~t-~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 348 LFTPSYYLALIIGFLLGFGDACFNT-QRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred ccccchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 1234566777889999888888 78889999885 788899888888777776655544433
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-11 Score=116.42 Aligned_cols=150 Identities=16% Similarity=0.092 Sum_probs=127.4
Q ss_pred cchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 011831 33 LLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAV 112 (476)
Q Consensus 33 ~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 112 (476)
......|.+.+|.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.+..+++.++.+++++.+.+++..++
T Consensus 223 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 302 (382)
T PRK11128 223 AYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQIL 302 (382)
T ss_pred hHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34444566667899999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred HHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHH-hhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHH
Q 011831 113 NGFGLAIVIPALQSFIADSYKDGVRGAGFGLLS-LVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAF 189 (476)
Q Consensus 113 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~ 189 (476)
.|++.+...+....++.+. +++++++..+..+ ...++|..+||.++|.+.+. .++ ..|+..+++.++..+
T Consensus 303 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~-----~g~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 303 HCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQH-----LGA-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccH-HHHHHHHHHHHHHHH
Confidence 9999999999999998887 5667789999886 66778889999999999997 787 466666666554433
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.1e-12 Score=123.74 Aligned_cols=166 Identities=14% Similarity=0.106 Sum_probs=125.3
Q ss_pred hhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhh--hH-H-HHHHHH
Q 011831 35 PSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQ--HF-L-HVGMWR 110 (476)
Q Consensus 35 ~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~-~-~l~~~r 110 (476)
....|.+.++.|.+..+.++......+...++.++.|+++||+|||++++.+.++.+++.++.+... +. + ....+.
T Consensus 291 ~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~ 370 (479)
T PRK10077 291 LYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSM 370 (479)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 3445888888998887777777788888999999999999999999999999999999888776542 11 1 222333
Q ss_pred HHHHhhhhh-hhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhccc-CCCCchhHHHHHHHHHHHHHH
Q 011831 111 AVNGFGLAI-VIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQF-WGVPGWRCAFILMATLSVLIA 188 (476)
Q Consensus 111 ~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~-~~~~~wr~~f~i~~~~~~~~~ 188 (476)
++.+.+.+. ..|....+++|.+|+++|++++|+......+|.++++.+.+.+.+... .+..+|++.|++.++.+++..
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (479)
T PRK10077 371 LFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAA 450 (479)
T ss_pred HHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHH
Confidence 444444443 336778999999999999999999999999999998777665541000 112789999999888888877
Q ss_pred HHhheeeccCCC
Q 011831 189 FLVLVFVVDPRK 200 (476)
Q Consensus 189 ~~~~~~~~~~~~ 200 (476)
++.+++.||++.
T Consensus 451 ~~~~~~~~e~~~ 462 (479)
T PRK10077 451 LFMWKFVPETKG 462 (479)
T ss_pred HHHHhccccCCC
Confidence 777777666543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.7e-11 Score=119.28 Aligned_cols=145 Identities=13% Similarity=0.127 Sum_probs=118.3
Q ss_pred HHHHHHHHHHhccchhhHHHHHH-hcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHh
Q 011831 21 NLAAIMERADENLLPSVYKEVSE-AFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGA 99 (476)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 99 (476)
....++............|.+.+ .+|.++.+.++......++..++.++.|++.||+|||+++..+.++.+++..+..+
T Consensus 267 l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~ 346 (471)
T PRK10504 267 LAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFML 346 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHh
Confidence 33334444444445556676665 57889999999999888999899999999999999999999999988888777665
Q ss_pred h---hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhc
Q 011831 100 S---QHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGH 165 (476)
Q Consensus 100 ~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~ 165 (476)
. ++.+.+.+..++.|++.+...+..+.++.+..|+++|+.++++.+....+|..+|+.+++.+.+.
T Consensus 347 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~ 415 (471)
T PRK10504 347 VALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGL 415 (471)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 33444555677889999988999999999999999999999999999999999999999998775
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.5e-11 Score=118.15 Aligned_cols=170 Identities=18% Similarity=0.209 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHH-HHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCch--hHH------HHH
Q 011831 17 LILINLAAIMERADENLLPSVYKEV-SEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPA--VLT------IGI 87 (476)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~--~~~------~~~ 87 (476)
+....+..+.............|.+ .+++|.+..+.+++.+...++..++.++.|++.||+|||+ ... .+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 296 (399)
T TIGR00893 217 VWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAG 296 (399)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Confidence 3344444555555555555556654 4568989999999999999999999999999999999996 111 111
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhccc
Q 011831 88 LCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQF 167 (476)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~ 167 (476)
++..+........++.+.......+.+.+.+ ..+...+++.|.+|+++|++++++.+....+|..++|.+.+.+.+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~-- 373 (399)
T TIGR00893 297 LVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAAT-- 373 (399)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccC--
Confidence 1111112222223344444444445455544 7889999999999999999999999999999999999999999987
Q ss_pred CCCCc-hhHHHHHHHHHHHHHHHHhh
Q 011831 168 WGVPG-WRCAFILMATLSVLIAFLVL 192 (476)
Q Consensus 168 ~~~~~-wr~~f~i~~~~~~~~~~~~~ 192 (476)
.+ |+..|++.++..++..+..+
T Consensus 374 ---~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 374 ---TGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHH
Confidence 67 99999998887766665544
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.2e-12 Score=114.25 Aligned_cols=128 Identities=18% Similarity=0.193 Sum_probs=102.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHH
Q 011831 265 FTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYT 344 (476)
Q Consensus 265 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (476)
.|...++.|+|..|.|.+.+...+..-++..+.|.++||.+.|+-. .++++++. +....+...+ ...+
T Consensus 52 ~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm-------~~gLilsa----i~nil~Gfs~-s~~~ 119 (448)
T COG2271 52 MPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFM-------AFGLILSA----IVNILFGFSP-SLFL 119 (448)
T ss_pred cHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceee-------hHHHHHHH----HHHHHHhhhh-HHHH
Confidence 5777777889999999999999999999999999999999999732 22222222 2222222222 4566
Q ss_pred HHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHH--HHHHhh
Q 011831 345 YAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLV--GILSEK 405 (476)
Q Consensus 345 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~--g~l~~~ 405 (476)
+.+...+.|.+.+...| .....+..-+|+++||+..++-|+..|+|+++.|.+. +.+.++
T Consensus 120 ~~~l~~lng~fQg~Gwp-p~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~ 181 (448)
T COG2271 120 FAVLWVLNGWFQGMGWP-PCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH 181 (448)
T ss_pred HHHHHHHHHHHhcCCCc-HHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc
Confidence 77888899999999999 6677888889999999999999999999999999998 888776
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.1e-12 Score=118.62 Aligned_cols=148 Identities=13% Similarity=0.087 Sum_probs=106.9
Q ss_pred HHHhhhhhhhHH-HHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHH
Q 011831 251 QGIVGSLPWTAM-VFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSW 329 (476)
Q Consensus 251 ~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (476)
..+......... ..+|.|..+.+.++.+.+.+.+...++..++.++.|+++||+|||+.. ..+..+......
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~-------~~~~~~~~~~~~ 79 (365)
T TIGR00900 7 AQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVM-------IGADLIRAVLVA 79 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHH-------HHHHHHHHHHHH
Confidence 333333333344 457888888999999999999999999999999999999999999732 111111111111
Q ss_pred hhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 330 FLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
.............+.+.+..++.|++.+...+ ...+++.|..|+++|++++|+.+....++..++|.+.+.+.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~ 155 (365)
T TIGR00900 80 VLPFVALLGGLNIWQVYVLAGILAIAQAFFTP-AYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL 155 (365)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111111111234455667778888887777 77899999999999999999999999999999999999998874
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.5e-11 Score=115.53 Aligned_cols=177 Identities=15% Similarity=0.168 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHHHHHh-ccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCc--hhHHHHHHHHH
Q 011831 15 LSLILINLAAIMERADE-NLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRP--AVLTIGILCWA 91 (476)
Q Consensus 15 ~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr--~~~~~~~~~~~ 91 (476)
+.+....+++++..-.. ++.......-.+++|++..+...+.-+..+...++++++|++.||+|.| +++..+++++.
T Consensus 281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~ 360 (477)
T PF11700_consen 281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWI 360 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 33444444544433222 3344445566668999999999999999999999999999999999999 89988888886
Q ss_pred HHHHHHHh--------hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHh
Q 011831 92 FSTAAVGA--------SQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMA 163 (476)
Q Consensus 92 ~~~~~~~~--------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~ 163 (476)
+..+...+ .++-+.+.+.-++.|+..|..++.+.++.+|..|+++.+..+|++....-....+||++.+.+.
T Consensus 361 ~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~ 440 (477)
T PF11700_consen 361 IIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLIT 440 (477)
T ss_pred HHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555 6788889999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCchhHHHHHHHHHHHHHHHHhheee
Q 011831 164 GHQFWGVPGWRCAFILMATLSVLIAFLVLVFV 195 (476)
Q Consensus 164 ~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~ 195 (476)
+.. .+-|+.+....++.++..++.++..
T Consensus 441 ~~t----g~~r~g~~~l~~lf~~gl~ll~~v~ 468 (477)
T PF11700_consen 441 DAT----GSQRYGFLFLLVLFLIGLILLFFVD 468 (477)
T ss_pred HHh----CCchhHHHHHHHHHHHHHHHHhhcc
Confidence 872 3578888888777666665554443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-11 Score=119.01 Aligned_cols=136 Identities=13% Similarity=0.181 Sum_probs=114.0
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhh
Q 011831 39 KEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTA-AVGASQHFLHVGMWRAVNGFGL 117 (476)
Q Consensus 39 ~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~ 117 (476)
+.+.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+..+.++..+... +....++.+.+.+..++.|+..
T Consensus 263 ~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (405)
T TIGR00891 263 TYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLV 342 (405)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 345567899999999999999999999999999999999999998888776543332 3334456666777778888877
Q ss_pred hhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCc-hhHHHHH
Q 011831 118 AIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPG-WRCAFIL 179 (476)
Q Consensus 118 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~-wr~~f~i 179 (476)
+...+...+++.|.+|+++|++++|+.+....+|..++|++.+.+.+. .| |+..+..
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-----~g~~~~~~~~ 400 (405)
T TIGR00891 343 QGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQR-----LDEYGTALAS 400 (405)
T ss_pred ccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh-----ccccchhHHh
Confidence 777788889999999999999999999999999999999999999987 66 7776655
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-10 Score=113.70 Aligned_cols=154 Identities=14% Similarity=0.178 Sum_probs=122.3
Q ss_pred hHHHHHHhcCCCCCchhHHHH-HHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHH---Hhh-hhHHHHHHHHH
Q 011831 37 VYKEVSEAFNAGPSDLGYLTF-IRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAV---GAS-QHFLHVGMWRA 111 (476)
Q Consensus 37 ~~~~i~~~~~~s~~~~g~~~s-~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~ 111 (476)
..|.+.+++|.+.++.+++.. ...++..++.++.|+++||+|+|+.+.++.++.++..++. +.. ++.+.+.+.-+
T Consensus 245 ~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~ 324 (491)
T PRK11010 245 TTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVF 324 (491)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 345556779999999999974 6668999999999999999999998777666555544332 232 35555555667
Q ss_pred HHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHh
Q 011831 112 VNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLV 191 (476)
Q Consensus 112 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~ 191 (476)
+..+..+...+...++..+..+++.+++..++.+...++|..+++.+.|.+.+. .||+..|.+.++++++..++.
T Consensus 325 l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~-----~G~~~~f~~~~~~~l~~l~~~ 399 (491)
T PRK11010 325 FENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEA-----HGWPTFYLFSVAAAVPGLLLL 399 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hChHHHHHHHHHHHHHHHHHH
Confidence 766666766777789999999999999999999999999999999999999997 899999999888887776666
Q ss_pred heee
Q 011831 192 LVFV 195 (476)
Q Consensus 192 ~~~~ 195 (476)
.+..
T Consensus 400 ~~~~ 403 (491)
T PRK11010 400 LVCR 403 (491)
T ss_pred HHHH
Confidence 5553
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.7e-11 Score=114.54 Aligned_cols=152 Identities=14% Similarity=0.133 Sum_probs=113.9
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHh
Q 011831 40 EVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGAS----QHFLHVGMWRAVNGF 115 (476)
Q Consensus 40 ~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~ 115 (476)
.+.+++|.+..+...+.....+...++.++.|+++||+|||+++..+.++..++.+..... ++.+.+++..++.|+
T Consensus 276 y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (438)
T PRK09952 276 YSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANI 355 (438)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 4456788887766566666677778889999999999999999888877665554433221 234444556677788
Q ss_pred hhhhhhhHHHHHHhhhcCCCcchhhHHHHH-hhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhhee
Q 011831 116 GLAIVIPALQSFIADSYKDGVRGAGFGLLS-LVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVF 194 (476)
Q Consensus 116 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~ 194 (476)
+.+...+...++++|.+|++.|+...++.. .+..+|..++|.+.+++.+.. ..+|+..+...++..++..+..+..
T Consensus 356 ~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~---~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 356 AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF---GGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHHHHc
Confidence 888888888999999999999999988854 455689999999999998741 1358888888877777666665544
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=7e-11 Score=108.78 Aligned_cols=169 Identities=14% Similarity=0.068 Sum_probs=137.4
Q ss_pred HHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhh
Q 011831 21 NLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGAS 100 (476)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 100 (476)
....+.....+..++.+-|.+++..|.+.+.++++.-.|.++..++..+.|++.|| +.|+.+.....+.++..+...+.
T Consensus 218 ~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~ 296 (394)
T COG2814 218 LATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFT 296 (394)
T ss_pred HHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHh
Confidence 33333344444566777889999999999999999999999999999999999999 99999999988888877776665
Q ss_pred -hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHH
Q 011831 101 -QHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFIL 179 (476)
Q Consensus 101 -~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i 179 (476)
++.+..++.-++.|+............+++ ..||.+..+.+++....++|..+|..+++.+.++ .|++...++
T Consensus 297 ~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~-----~g~~~~~~~ 370 (394)
T COG2814 297 GASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDA-----LGYAATGWV 370 (394)
T ss_pred cchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hchHHHHHH
Confidence 455566666677777766666655566666 4478999999999999999999999999999998 999999999
Q ss_pred HHHHHHHHHHHhheeec
Q 011831 180 MATLSVLIAFLVLVFVV 196 (476)
Q Consensus 180 ~~~~~~~~~~~~~~~~~ 196 (476)
.+++.++..++.+...+
T Consensus 371 ~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 371 GAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99988877776665443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.6e-11 Score=117.49 Aligned_cols=175 Identities=13% Similarity=0.112 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHhccchhhHHHHHHh-cCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhc--CCchhH-HHHHHHHHHH
Q 011831 18 ILINLAAIMERADENLLPSVYKEVSEA-FNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINY--DRPAVL-TIGILCWAFS 93 (476)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~--Grr~~~-~~~~~~~~~~ 93 (476)
....+..++...........+|.+.++ .|.+..+.++....+.++..++.++.|+++||+ +||+.. .....+..++
T Consensus 256 ~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~ 335 (452)
T PRK11273 256 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA 335 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 334444444443334445566766654 788988999999999999999999999999999 555432 2222333333
Q ss_pred HHHHHh--hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhh-hHHHHHHHHhhcccCCC
Q 011831 94 TAAVGA--SQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGI-GGGVLATIMAGHQFWGV 170 (476)
Q Consensus 94 ~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~-~g~~~~~~l~~~~~~~~ 170 (476)
.++..+ ..+.+..++..++.|.+..........++.|.+|+++||+++|+.+....+|.. ++|.+.+.+.+.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~----- 410 (452)
T PRK11273 336 TIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF----- 410 (452)
T ss_pred HHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH-----
Confidence 333222 234444445555555544333334445678999999999999999988888765 589999999988
Q ss_pred CchhHHHHHHHHHHHHHHHHhheeecc
Q 011831 171 PGWRCAFILMATLSVLIAFLVLVFVVD 197 (476)
Q Consensus 171 ~~wr~~f~i~~~~~~~~~~~~~~~~~~ 197 (476)
.||+..|++.++.+++..+....+...
T Consensus 411 ~g~~~~f~~~~~~~~~~~~~~~~~~~~ 437 (452)
T PRK11273 411 FGWDGGFMVMIGGSILAVILLIVVMIG 437 (452)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 899999999888777766666555443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-11 Score=117.79 Aligned_cols=151 Identities=14% Similarity=0.150 Sum_probs=101.2
Q ss_pred hHHHHHHHHHhh-hhhhhHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhh-ccccCCCcchhHhHHH
Q 011831 244 TFQIIVLQGIVG-SLPWTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRI-SQAYPHSGRVMCAQFS 320 (476)
Q Consensus 244 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~~~~~~~~~~~~ 320 (476)
.++......... ...|+...++|.|+++ +|+++.+++.+.........++.+++|+++||+ |||+.. ..+
T Consensus 10 ~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~i-------liG 82 (493)
T PRK15462 10 AIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAV-------MLG 82 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHH-------HHH
Confidence 344444333333 3345566889999976 899999999999999999999999999999999 998732 112
Q ss_pred HHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCcc--chhhHHHHHHhhhhhhhhhhhHH
Q 011831 321 AFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAK--HRTMIYAFDRAFEGSFSSFAAPL 398 (476)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~--~~g~~~g~~~~~~~~~~~~~~~~ 398 (476)
..+..... ..+ ....... .. ..+...+..++.+...+ ...+++.|.+|++ +|.++.++.....++|+.++|.+
T Consensus 83 ~il~~lg~-lll-~~~~~~~-~~-~~l~l~li~iG~G~~~~-~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l 157 (493)
T PRK15462 83 ALLMAIGH-VVL-GASEIHP-SF-LYLSLAIIVCGYGLFKS-NVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIA 157 (493)
T ss_pred HHHHHHHH-HHH-HHhhcch-hH-HHHHHHHHHHhcccccc-cHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHH
Confidence 22111111 111 1111111 11 22222333344444444 5578899999875 69999999999999999999999
Q ss_pred HHHHHhhh
Q 011831 399 VGILSEKM 406 (476)
Q Consensus 399 ~g~l~~~~ 406 (476)
.|++.+..
T Consensus 158 ~g~L~~~~ 165 (493)
T PRK15462 158 CGYAQEEY 165 (493)
T ss_pred HHHHHhhh
Confidence 99998863
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.1e-11 Score=102.49 Aligned_cols=177 Identities=14% Similarity=0.101 Sum_probs=134.8
Q ss_pred hHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHH
Q 011831 13 ISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAF 92 (476)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~ 92 (476)
||..+..........+ ..+.++..-|++++.+|.|.+|...+.+...+|..+ .++.|.+.|++|++.++.+|.+...+
T Consensus 1 rW~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~ 78 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSG-TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFV 78 (250)
T ss_pred ChhhHHHHHHHHHhcC-cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 4555554444444443 446678888999999999999999999999999986 58899999999999999999999999
Q ss_pred HHHHHHhh-------hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhc
Q 011831 93 STAAVGAS-------QHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGH 165 (476)
Q Consensus 93 ~~~~~~~~-------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~ 165 (476)
|..+...+ .++|.+.+..++.|.+.+....++.....+.+| ++||++.|+.-...+++..+-..+...+.+.
T Consensus 79 GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 79 GYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred HHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 99887663 467888888889989888887887787888895 6899999999999999998877777777653
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhheeeccC
Q 011831 166 QFWGVPGWRCAFILMATLSVLIAFLVLVFVVDP 198 (476)
Q Consensus 166 ~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~ 198 (476)
..-+..+ ..+....+..++...+.+..
T Consensus 158 -----~~~~fll-~la~~~~~v~l~~~~~vr~~ 184 (250)
T PF06813_consen 158 -----DPSSFLL-FLAVLPAVVCLVAMFFVRPV 184 (250)
T ss_pred -----ChHHHHH-HHHHHHHHHHHHHhhheecc
Confidence 2233333 33443334444444444433
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.8e-11 Score=113.63 Aligned_cols=143 Identities=13% Similarity=0.230 Sum_probs=123.9
Q ss_pred CCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHH
Q 011831 46 NAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQ 125 (476)
Q Consensus 46 ~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 125 (476)
+.+..+.|.+.+...+...++.+..|++.||+|+|+.+.++.++.++...+.+.+++.+.+++.+++.|++.........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556678889998999999999999999999999999999999999888888889999999999999999877777777
Q ss_pred HHHhhhcCCCcchhhHHH-HHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhhe
Q 011831 126 SFIADSYKDGVRGAGFGL-LSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLV 193 (476)
Q Consensus 126 ~~i~~~~~~~~r~~~~~~-~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~ 193 (476)
.++.+..+++.++...+. .+....+|..+++.+++++.+. .||+..|.+.+++.++..+...+
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~-----~G~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS-----IGFQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh-----cccHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888887766 6788999999999999999997 79999999999988777665543
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.1e-11 Score=114.37 Aligned_cols=141 Identities=16% Similarity=0.077 Sum_probs=106.7
Q ss_pred chhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 011831 34 LPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVN 113 (476)
Q Consensus 34 ~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 113 (476)
+...+|.+.++.|.++.+.+.+.+...++..++.++.|++.||+|||+.+..+.++..+..+.....++.....+.-.+.
T Consensus 250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (426)
T PRK12307 250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLF 329 (426)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 34456777778898988999999999999999999999999999999999888887776665544332211122222333
Q ss_pred Hh--hhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHH
Q 011831 114 GF--GLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFIL 179 (476)
Q Consensus 114 G~--~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i 179 (476)
|+ +..+..+..+.++.|.+|+++|++++|+......+|..++|.+.+++.+. .|+....++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~-----~g~~~~~~~ 392 (426)
T PRK12307 330 GLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGIT-----MGLGAALTF 392 (426)
T ss_pred HHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHc-----ccHHHHHHH
Confidence 33 22233455667889999999999999999999999999999999999987 676654333
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-10 Score=113.41 Aligned_cols=135 Identities=16% Similarity=0.095 Sum_probs=100.2
Q ss_pred hccchhhHHHHHHh-cCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHH-HH---hhhhHHH
Q 011831 31 ENLLPSVYKEVSEA-FNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAA-VG---ASQHFLH 105 (476)
Q Consensus 31 ~~~~~~~~~~i~~~-~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~-~~---~~~~~~~ 105 (476)
........|.+.++ +|.+..+.++....+.++..++.+++|+++||+|||+++..+..+..+.... .. ..+++..
T Consensus 254 ~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (434)
T PRK15075 254 FYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFAR 333 (434)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 33445556766554 7999889999988999999999999999999999999887765544332211 11 1234444
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHH-hhhhhhhhhHHHHHHHHhhc
Q 011831 106 VGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLS-LVGTMGGIGGGVLATIMAGH 165 (476)
Q Consensus 106 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~lG~~~g~~~~~~l~~~ 165 (476)
+.+..++.|++.+...+....++.|.+|+++|++.+++.. .+..++..++|.+.+++.+.
T Consensus 334 ~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~ 394 (434)
T PRK15075 334 MLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHV 394 (434)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 4455666777777777777789999999999999999864 44445677899999999987
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.1e-11 Score=113.79 Aligned_cols=146 Identities=12% Similarity=0.081 Sum_probs=105.1
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhh
Q 011831 246 QIIVLQGIVGSLPWTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMG 324 (476)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~ 324 (476)
..+....+.....+....++|.++++ .|+|+.+.|+..+...+...+.+++.|+++||+++|+.. ..+....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l-------~~~~~~~ 86 (400)
T PRK11646 14 FLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMI-------VTGMLMR 86 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHH-------HHHHHHH
Confidence 33333333334445555788888754 999999999999999999999999999999999998732 2222222
Q ss_pred hhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHh
Q 011831 325 IPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSE 404 (476)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 404 (476)
....... ...++ ++.+.+..++.|++.+...+ ...+++.|..|+++|+++.|+.+...+++..+||.++|++.+
T Consensus 87 ~~~~~~~----~~~~~-~~~l~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~ 160 (400)
T PRK11646 87 AAGFATM----AIAHE-PWLLWLSCILSGLGGTLFDP-PRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ 160 (400)
T ss_pred HHHHHHH----HHhcc-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111111 11223 33345566777877766666 567888999999999999999999999999999999999984
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-10 Score=114.53 Aligned_cols=167 Identities=12% Similarity=0.014 Sum_probs=111.7
Q ss_pred cchhhHHHHHHhcCCCCCchhH------------HHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhh
Q 011831 33 LLPSVYKEVSEAFNAGPSDLGY------------LTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGAS 100 (476)
Q Consensus 33 ~~~~~~~~i~~~~~~s~~~~g~------------~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 100 (476)
......|.+.++.|.+..+.+. ......++..++.++.++++||+|||++++.+..+.+++..+.++.
T Consensus 306 ~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~ 385 (502)
T TIGR00887 306 GVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFA 385 (502)
T ss_pred ccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 3344467777888876543221 1233445666788899999999999999988888888777666653
Q ss_pred hh----HHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccC-----CCC
Q 011831 101 QH----FLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFW-----GVP 171 (476)
Q Consensus 101 ~~----~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~-----~~~ 171 (476)
.+ ...+...-+...++..+..+....+.+|.+|++.|+++.++.+....+|.+++|.+.+.+.+.... ...
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 465 (502)
T TIGR00887 386 YNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGI 465 (502)
T ss_pred HHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccc
Confidence 21 111111111112222234456677789999999999999999999999999999999998874100 013
Q ss_pred chhHHHHHHHHHHHHHHHHhheeeccCCC
Q 011831 172 GWRCAFILMATLSVLIAFLVLVFVVDPRK 200 (476)
Q Consensus 172 ~wr~~f~i~~~~~~~~~~~~~~~~~~~~~ 200 (476)
++...|++.++.+++..+.. ++.||++.
T Consensus 466 ~~~~~~~i~~~~~~~~~i~~-~~lpEt~~ 493 (502)
T TIGR00887 466 WMGHVLEIFALFMFLGILFT-LLIPETKG 493 (502)
T ss_pred cchHHHHHHHHHHHHHHHHh-eEeccCCC
Confidence 55678888888777665554 55566554
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.9e-11 Score=117.39 Aligned_cols=151 Identities=9% Similarity=0.055 Sum_probs=107.7
Q ss_pred hhHHHHHHHHHhhhh-hhhHHHHHHHHHHH---hCCChhHHHHHHHHHHhhhhhhhchhhhhhhh-hccccCCCcchhHh
Q 011831 243 PTFQIIVLQGIVGSL-PWTAMVFFTMWFEL---IGFDHSSTAALLSLFAIGCAVGSFLGGVVADR-ISQAYPHSGRVMCA 317 (476)
Q Consensus 243 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~~~~ 317 (476)
+.++.+.+..++... .+....++|.|+++ +|++..+++.+.+...++..++.+++|+++|| +|||+..
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l------- 82 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTM------- 82 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHH-------
Confidence 334445555555444 45566889999875 79999999999999999999999999999999 7999742
Q ss_pred HHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccc---hhhHHHHHHhhhhhhhhh
Q 011831 318 QFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKH---RTMIYAFDRAFEGSFSSF 394 (476)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~---~g~~~g~~~~~~~~~~~~ 394 (476)
..+..+.. +........++ ...+.+...+.|++.+...+ ...+++.|.+|+++ |+++.++.+...++|..+
T Consensus 83 ~~~~~~~~----~g~~~~~~~~~-~~~~~~~~~l~g~g~g~~~~-~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~i 156 (475)
T TIGR00924 83 VLGGIVLM----LGHFMLAMSIY-PDLIFYGLGTIAVGSGLFKA-NPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFI 156 (475)
T ss_pred HHHHHHHH----HHHHHHHhccc-HhHHHHHHHHHHhccccccC-CHHHHHHHhcCCCCcccccceehhHHHHHHHHHHH
Confidence 11121111 11111111222 22344455667777776666 66788889888654 888999999999999999
Q ss_pred hhHHHHHHHhhh
Q 011831 395 AAPLVGILSEKM 406 (476)
Q Consensus 395 ~~~~~g~l~~~~ 406 (476)
+|.+.|++.++.
T Consensus 157 g~~l~g~l~~~~ 168 (475)
T TIGR00924 157 SPLLAGVIAENY 168 (475)
T ss_pred HHHHHHHHHHhc
Confidence 999999999873
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.7e-11 Score=114.37 Aligned_cols=131 Identities=18% Similarity=0.137 Sum_probs=100.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchH
Q 011831 263 VFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNY 342 (476)
Q Consensus 263 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (476)
...|.+.+++|.|+.+.+...+...++..++.++.|++.||+|||+.. ..+..+....... ....++ .
T Consensus 26 ~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~-------~~~~~~~~~~~~~----~~~~~~-~ 93 (385)
T TIGR00710 26 PAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVL-------LLGLFIFALSSLG----LALSNN-I 93 (385)
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHH-------HHHHHHHHHHHHH----HHHHcc-H
Confidence 457777788999999999999999999999999999999999998732 1111111111111 111222 3
Q ss_pred HHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 343 YTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 343 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
..+.+..++.|++.+...+ ...+++.|.+|+++|+++.++.+....++..++|.+.+.+.+..
T Consensus 94 ~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 156 (385)
T TIGR00710 94 ETLLVLRFVQAFGASAGSV-ISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL 156 (385)
T ss_pred HHHHHHHHHHHcchhHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455666778888777766 67889999999999999999999999999999999999988863
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-10 Score=110.96 Aligned_cols=149 Identities=14% Similarity=0.010 Sum_probs=116.2
Q ss_pred hHHHHHHhcCCCCCchhHHHHHHHH-HHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHh------hhhHHHHHHH
Q 011831 37 VYKEVSEAFNAGPSDLGYLTFIRNF-VQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGA------SQHFLHVGMW 109 (476)
Q Consensus 37 ~~~~i~~~~~~s~~~~g~~~s~~~l-~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~ 109 (476)
..+.+.+|.|.+++++|++...... ...++.++.|++.||+|+|+.+..+..+.++..+.... .++...+...
T Consensus 230 ~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (390)
T TIGR02718 230 LSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC 309 (390)
T ss_pred HhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH
Confidence 4456667789999999999888764 66677899999999999999988877665443332221 1233344555
Q ss_pred HHHHHhhhhhhhhHHHHHHhhhcCC-CcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHH
Q 011831 110 RAVNGFGLAIVIPALQSFIADSYKD-GVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIA 188 (476)
Q Consensus 110 r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~ 188 (476)
..+.+++.+...+...+.+.+..++ +++++.+++.+...++|..++|.+++.+.+. .||+..|++.+++.++..
T Consensus 310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~-----~G~~~~f~~~~~~~l~a~ 384 (390)
T TIGR02718 310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR-----FGYAGGFLSGTVLAVLAI 384 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HccHHHHHHHHHHHHHHH
Confidence 5667777788888888888888776 8899999999999999999999999999998 899999998887766654
Q ss_pred HH
Q 011831 189 FL 190 (476)
Q Consensus 189 ~~ 190 (476)
++
T Consensus 385 ~~ 386 (390)
T TIGR02718 385 LL 386 (390)
T ss_pred HH
Confidence 43
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.2e-11 Score=113.49 Aligned_cols=406 Identities=15% Similarity=0.060 Sum_probs=225.8
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCch-hHHHHHHHHHHHHH
Q 011831 17 LILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPA-VLTIGILCWAFSTA 95 (476)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~-~~~~~~~~~~~~~~ 95 (476)
+..+=+.++..+...+.+-|.++.+.+++|+++.+.|.+.+.-.+...++.|++|+++||+-+|| .++.+++.+..+++
T Consensus 13 l~~~k~f~~~~~~~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~f 92 (618)
T KOG3762|consen 13 LIVAKLFYLFFGARFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATF 92 (618)
T ss_pred hheeeeeeeeeeecccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 34444445555666678888999999999999999999999999999999999999999998766 56666666666777
Q ss_pred HHHhhh----hHHH----------HHHHHHHHHhhhhhh----------hhHHHHHH------------hhhcCCCc---
Q 011831 96 AVGASQ----HFLH----------VGMWRAVNGFGLAIV----------IPALQSFI------------ADSYKDGV--- 136 (476)
Q Consensus 96 ~~~~~~----~~~~----------l~~~r~l~G~~~~~~----------~~~~~~~i------------~~~~~~~~--- 136 (476)
+..+.+ +... .-..|..-|+..... .|+-.+.- +|+.+.+.
T Consensus 93 ll~fv~P~~~~~i~~~~~~c~~~~~~~~~~~~~v~l~~~~~s~~~~~~s~pa~~~~~~Eap~~~~~~~~s~~~~~~d~~~ 172 (618)
T KOG3762|consen 93 LLVFVPPVDKNRIHEVFFCCDSSGLDSGRALRGVTLPVNINSCQEGASSRPAKCALEVEAPGFRNPIEESDFLTFEDEHA 172 (618)
T ss_pred heeeccCcccCcccccccccccccCchhhhccCccceechhhhhccccCCcHHHHHhccCccccCCcccchhhhhhhhhh
Confidence 766642 1111 222233333322111 11111110 00000000
Q ss_pred -------------------------------c----------------------------------------hhhHHHHH
Q 011831 137 -------------------------------R----------------------------------------GAGFGLLS 145 (476)
Q Consensus 137 -------------------------------r----------------------------------------~~~~~~~~ 145 (476)
| ....+...
T Consensus 173 ~i~ps~~~~v~s~~~~~~~~~~s~~~~~~~~rq~~v~~~~v~Ll~~~~~~ef~s~c~~~~~d~~~~~~~~e~~~~~~~~~ 252 (618)
T KOG3762|consen 173 AIAPSVITFVRSYDQALLEPVVSPLFSHRVYRQPEVQKAHVCLLTPIKIGEFFSNCAGTLADAAVFDLLLEAAAITGSLR 252 (618)
T ss_pred ccchhhhcccccCCHHhhccccCcccccchhcccccccceeEEeecccccccccCccccchHHHHHHHHhhhhhhhceee
Confidence 0 00001111
Q ss_pred hhhhhhhhhHHHHHHHH-hhc----c------c--CCCCchhHHHHHHHHHHHHHHHHhhe--eecc-CCCCCCCccCCC
Q 011831 146 LVGTMGGIGGGVLATIM-AGH----Q------F--WGVPGWRCAFILMATLSVLIAFLVLV--FVVD-PRKKASTFHGTG 209 (476)
Q Consensus 146 ~~~~lG~~~g~~~~~~l-~~~----~------~--~~~~~wr~~f~i~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~ 209 (476)
.+...|..+..++.+.+ .++ . . ....+|+..+.++++.+.-......- +.-+ ......+....+
T Consensus 253 ~~~~~gW~l~~~~~~~i~~d~~~sf~d~~c~~~~~~e~~n~~~~~~v~gv~~~~A~~~~~~~~~~~~~~~~~v~~~~~~~ 332 (618)
T KOG3762|consen 253 YGASLGWGLAMFLCGQIALDYTYSFSDAPCKGDLGDEEKNYYLCQRVCGVLGTGATGSAADCFFKYDMGHRLVVDSYGAE 332 (618)
T ss_pred ccchhHHHHHHHHHhhhhhhhhhhhhcCCCccccchhhhchhhhhhHHHHHHHHHHHHhcCcEEEeccccccccccccHH
Confidence 12222222222222211 111 0 0 11457888888888766555444332 3322 111111111100
Q ss_pred CCC-ChhhH----hhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhhhhhHH-HHHHHHHHHhCCChhHHHHHH
Q 011831 210 ENF-DRDEL----VEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAM-VFFTMWFELIGFDHSSTAALL 283 (476)
Q Consensus 210 ~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~g~~~ 283 (476)
... ..... ...+....+...+..+.....++.++....+++...+.....+.. +|+=-++++.|-.+..-|...
T Consensus 333 v~~~l~~~~~~~f~~s~~~~~~~~~~~v~a~~~~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~ 412 (618)
T KOG3762|consen 333 VESMLALAASIAFPSSKLGQGEPHSSSVLADVGKVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVS 412 (618)
T ss_pred HHHHHHHHHHhhccccccCCCCchHHHHHHHHHHHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehh
Confidence 000 00000 000000111111233333334555555544444444433333333 667667788887778888777
Q ss_pred HHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhccc
Q 011831 284 SLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAA 363 (476)
Q Consensus 284 ~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 363 (476)
+..-.+.++.-++.+++.+|+|+-+... +++.+...=+.......+ +|.....-++-|+..+.... .
T Consensus 413 a~~~~gEI~~~ffs~klI~kiGHv~v~~-----------lgLa~~~~Rf~~~S~L~n-~W~vLPieilqgit~aliWa-a 479 (618)
T KOG3762|consen 413 ALCHAGEILFYFFSFKLIEKIGHVNVMY-----------LGLACNVGRFLYYSYLQN-PWMVLPIEILQGITHALIWA-A 479 (618)
T ss_pred hhhccchHHHHHHHHHHHHHhcccceee-----------ehhhHHHHHHHHHHHhcC-chheeeHHHHHHHHHHHHHH-H
Confidence 7888889999999999999999987531 111111122222222333 34455777889999998888 7
Q ss_pred ccchhhcccCccchhhHHHHHHhhhh-hhhhhhhHHHHHHHhhhhcCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 011831 364 NGPMFAEVVPAKHRTMIYAFDRAFEG-SFSSFAAPLVGILSEKMFGYDSKAIDPVMGSPREALALSRGLLSMMAVPFGLC 442 (476)
Q Consensus 364 ~~~~~~~~~p~~~~g~~~g~~~~~~~-~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (476)
..+++....||+.+.++.++...... +|-.+|++++|.+.+..+. ...+..+++.+++.
T Consensus 480 ~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~--------------------~ttf~~~giAcl~~ 539 (618)
T KOG3762|consen 480 IISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGA--------------------RTTFRIFGIACLVT 539 (618)
T ss_pred HHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehh--------------------HHHHHHHHHHHHHH
Confidence 78999999999999999999887654 4556999999999998654 44455555545555
Q ss_pred HHHHhhhhhhchh
Q 011831 443 CLFYTPLYKIFKR 455 (476)
Q Consensus 443 ~~~~~~~~~~~~~ 455 (476)
++..+.+.+..++
T Consensus 540 l~~~~~iq~~l~~ 552 (618)
T KOG3762|consen 540 LALFISIQLLLKR 552 (618)
T ss_pred HHHHHHhhhhhcc
Confidence 5555444444433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.3e-11 Score=112.75 Aligned_cols=142 Identities=18% Similarity=0.113 Sum_probs=114.6
Q ss_pred HHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhh
Q 011831 21 NLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGAS 100 (476)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 100 (476)
.+..+.............|.+.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+....+......++....
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (398)
T TIGR00895 256 WLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTL 335 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444445556678888999999999999999999999999999999999999955544444433333333335
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHH
Q 011831 101 QHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIM 162 (476)
Q Consensus 101 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l 162 (476)
++.+.+++..++.|++.+...+...+++.|.+|+++|++++|+......+|..++|.+++.+
T Consensus 336 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 336 FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 67777888889999999999999999999999999999999999999999999999999875
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.26 E-value=3e-11 Score=114.13 Aligned_cols=131 Identities=19% Similarity=0.191 Sum_probs=101.0
Q ss_pred HHHH-HHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcch
Q 011831 263 VFFT-MWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSN 341 (476)
Q Consensus 263 ~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (476)
..+| .+.+++|.++.+.+++.+...++..++.++.|+++||+|||+. ...+..+......+..+ . ++.
T Consensus 17 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-------l~~~~~~~~~~~~~~~~--~--~~~ 85 (352)
T PF07690_consen 17 PALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRV-------LIIGLLLFALGSLLLAF--A--SNF 85 (352)
T ss_dssp HHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHH-------HHHHHHHHHHHHHHHHH--H--CCH
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-------EeehhhhhhhHHHHhhh--h--hhH
Confidence 4566 4445699999999999999999999999999999999999973 22222222222111111 1 333
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 342 YYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 342 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
+ .+.+..++.|++.+...+ ....++.|.+|+++|++++++.+...+++..++|.+.+.+.+..
T Consensus 86 ~-~~~~~~~l~g~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~ 148 (352)
T PF07690_consen 86 W-LLLIARFLLGIGSGFFSP-ASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF 148 (352)
T ss_dssp H-HHHHHHHHHHHHHHHHHH-HHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC
T ss_pred H-HHhhhccccccccccccc-cccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc
Confidence 4 567788889998887777 78899999999999999999999999999999999999998663
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.2e-10 Score=109.40 Aligned_cols=153 Identities=12% Similarity=0.041 Sum_probs=119.9
Q ss_pred hHHHH-HHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhh-----hHHHHHHHH
Q 011831 37 VYKEV-SEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQ-----HFLHVGMWR 110 (476)
Q Consensus 37 ~~~~i-~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~r 110 (476)
..|.+ .+++|.++.+.++......++..++.++.|++.||+++|+.+..+.++..++.++..+.+ +.+.+++..
T Consensus 237 ~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 316 (406)
T PRK15402 237 LSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGL 316 (406)
T ss_pred HhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHH
Confidence 34544 567899999999888888888999999999999999999999999888888777776543 566677888
Q ss_pred HHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHH
Q 011831 111 AVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFL 190 (476)
Q Consensus 111 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~ 190 (476)
++.|++.+...+......... ++++||+..+..+....+|..+|+.+++.+.+. .++....+..++.+++..+.
T Consensus 317 ~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~ 390 (406)
T PRK15402 317 SLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLG-----GGNGLFNLFNLANGLLWLLL 390 (406)
T ss_pred HHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccC-----CchHHHHHHHHHHHHHHHHH
Confidence 999999988877766655444 458999999999999999999999999999876 67666655555555544444
Q ss_pred hheee
Q 011831 191 VLVFV 195 (476)
Q Consensus 191 ~~~~~ 195 (476)
...+.
T Consensus 391 ~~~~~ 395 (406)
T PRK15402 391 VRIFL 395 (406)
T ss_pred HHHHh
Confidence 43333
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.8e-10 Score=103.86 Aligned_cols=176 Identities=20% Similarity=0.242 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHH
Q 011831 17 LILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAA 96 (476)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~ 96 (476)
..++.-..+.++.+ +.....-..-.+++|++..++.++.....+..+++++++|+|.||+|.|+++..++++..+.++.
T Consensus 256 ~FLiA~~~~~DGv~-til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~ 334 (438)
T COG2270 256 LFLIARFFYIDGVN-TILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALY 334 (438)
T ss_pred HHHHHHHHHHhhHH-HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHH
Confidence 33334444444443 22333334445599999999999999999999999999999999999999999999999999988
Q ss_pred HHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHH
Q 011831 97 VGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCA 176 (476)
Q Consensus 97 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~ 176 (476)
.-+...-..+.++-.+.|...|+.+..+.++.++..|++|-++.+|+++...-.+..+||.+-+.+.+.+ .+-|..
T Consensus 335 ~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iT----g~~r~g 410 (438)
T COG2270 335 LIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQIT----GSSRAG 410 (438)
T ss_pred HHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHh----cchhhH
Confidence 8887776677777899999999999999999999999999999999999999999999999999999873 456766
Q ss_pred HHHHHHHHHHHHHHhheeeccC
Q 011831 177 FILMATLSVLIAFLVLVFVVDP 198 (476)
Q Consensus 177 f~i~~~~~~~~~~~~~~~~~~~ 198 (476)
+....++.. ..++.+...|++
T Consensus 411 ~~~i~vll~-iGl~~L~~v~~~ 431 (438)
T COG2270 411 VLSIIVLLL-IGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHH-hhHhhEEeecCC
Confidence 666555543 333444444444
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.8e-10 Score=106.46 Aligned_cols=153 Identities=12% Similarity=0.071 Sum_probs=103.8
Q ss_pred chhHHHHHHHHHhhhhhhhHHHH-HHHHHH-HhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHH
Q 011831 242 VPTFQIIVLQGIVGSLPWTAMVF-FTMWFE-LIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQF 319 (476)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 319 (476)
+|.++...+....++..+....- .+.+-+ ++|+|+.|.+++.++..+...+.++..|++.||+|.|+. ....
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v------~~~~ 106 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRW------TVFS 106 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH------HHHH
Confidence 35666666666666666666543 455445 599999999999999999999999999999999999973 2222
Q ss_pred HHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHH
Q 011831 320 SAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLV 399 (476)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~ 399 (476)
....+.+.....+ ......++...+.+.-++.|++ +...+ .....+.+.+|+++||++.|+....+++|..+++.+.
T Consensus 107 ~ll~~i~~~~~~~-a~~~~~~s~~~lli~r~l~Gig-g~~f~-~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~ 183 (462)
T PRK15034 107 TAILIIPCVWLGI-AVQNPNTPFGIFIVIALLCGFA-GANFA-SSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVA 183 (462)
T ss_pred HHHHHHHHHHHHH-HHcccCCCHHHHHHHHHHHHHH-HHhHH-HHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHH
Confidence 2222222221111 1111112244566667777776 44555 5678889999999999999999888888887777766
Q ss_pred HHHH
Q 011831 400 GILS 403 (476)
Q Consensus 400 g~l~ 403 (476)
+.+.
T Consensus 184 p~~i 187 (462)
T PRK15034 184 PLVI 187 (462)
T ss_pred HHHH
Confidence 6544
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-10 Score=114.54 Aligned_cols=154 Identities=12% Similarity=0.076 Sum_probs=101.4
Q ss_pred cch-hHHHHHHHHHhhhhh-hhHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhh-hccccCCCcchhH
Q 011831 241 KVP-TFQIIVLQGIVGSLP-WTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADR-ISQAYPHSGRVMC 316 (476)
Q Consensus 241 ~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~~~ 316 (476)
++| .++..+...++.... +....+++.|+++ +|++..+++..............+++|+++|| +|||+..
T Consensus 18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~------ 91 (500)
T PRK09584 18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVI------ 91 (500)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH------
Confidence 444 466655555555444 5555889999865 99999998887777665555556789999999 5998732
Q ss_pred hHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccc--hhhHHHHHHhhhhhhhhh
Q 011831 317 AQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKH--RTMIYAFDRAFEGSFSSF 394 (476)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~--~g~~~g~~~~~~~~~~~~ 394 (476)
..+..+..... ..+ .. .++....+.+...+.|++.+...+ ...+++.|.+|+++ +..+.++.+...++|..+
T Consensus 92 -~~g~~~~~ig~-~l~-~~--~~~~~~~l~~~~~l~gig~g~~~~-~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~ 165 (500)
T PRK09584 92 -MLGAIVLAIGY-ALV-AW--SGHDAGIVYMGMATIAVGNGLFKA-NPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFF 165 (500)
T ss_pred -HHHHHHHHHHH-HHH-HH--hcccHHHHHHHHHHHHHhhhcccC-CHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHH
Confidence 11111111111 111 11 111123344555667777776666 66788999997653 456788889999999999
Q ss_pred hhHHHHHHHhhh
Q 011831 395 AAPLVGILSEKM 406 (476)
Q Consensus 395 ~~~~~g~l~~~~ 406 (476)
+|.+.|++.|..
T Consensus 166 gp~i~g~l~~~~ 177 (500)
T PRK09584 166 SMLATPWLAAKY 177 (500)
T ss_pred HHHHHHHHHHhh
Confidence 999999999874
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=114.14 Aligned_cols=150 Identities=13% Similarity=0.028 Sum_probs=106.6
Q ss_pred HHH-HHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCch-------hHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 011831 38 YKE-VSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPA-------VLTIGILCWAFSTAAVGASQHFLHVGMW 109 (476)
Q Consensus 38 ~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 109 (476)
+|. +.+++|.+..+.+.+.+.+.++..++.+++|+++||++||+ ...+..++.++..++.+..++.+...+.
T Consensus 275 ~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 354 (476)
T PLN00028 275 IAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVV 354 (476)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 444 45678999999999999999999999999999999998752 3333444444444455556666666666
Q ss_pred HHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHH
Q 011831 110 RAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAF 189 (476)
Q Consensus 110 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~ 189 (476)
-++.+++.+...+...+++.+.. +++|+...|+.+.+..+|..+++.+.+ ... ..+|+..|++.+++.++..+
T Consensus 355 ~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~-----~~~y~~~f~~~~~~~~i~~~ 427 (476)
T PLN00028 355 MILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGS-----SYSTETGISLMGVMIIACTL 427 (476)
T ss_pred HHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcC-----CccHhhHHHHHHHHHHHHHH
Confidence 66777776666666666666654 578999999987777777766665543 111 25799999999888777666
Q ss_pred Hhhee
Q 011831 190 LVLVF 194 (476)
Q Consensus 190 ~~~~~ 194 (476)
+.++.
T Consensus 428 ~~~~~ 432 (476)
T PLN00028 428 PVAFI 432 (476)
T ss_pred HHHhe
Confidence 65554
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=112.01 Aligned_cols=129 Identities=11% Similarity=-0.085 Sum_probs=97.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHH
Q 011831 264 FFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYY 343 (476)
Q Consensus 264 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (476)
..|.+.+++|+++.+.++..+...++..++.+..|++.||+|||+.. ..+.++... ........++ ..
T Consensus 30 ~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~-------~~~~~~~~~----~~~~~~~~~~-~~ 97 (412)
T TIGR02332 30 AGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWI-------AGIMVLWGI----ASTATMFATG-PE 97 (412)
T ss_pred HHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHH-------HHHHHHHHH----HHHHHHHhcC-HH
Confidence 35655567999999999999999999999999999999999999731 111111111 1111111222 33
Q ss_pred HHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhh
Q 011831 344 TYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEK 405 (476)
Q Consensus 344 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 405 (476)
.+.+.-++.|++.+...+ ....++.|.+|+++|+++.|+.+....+|..+++.+.+++.+.
T Consensus 98 ~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~ 158 (412)
T TIGR02332 98 SLYLLRILVGIAEAGFLP-GILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILAL 158 (412)
T ss_pred HHHHHHHHHHHHHhhHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455666788888887766 6677889999999999999999999999999999999998753
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-10 Score=112.16 Aligned_cols=130 Identities=13% Similarity=0.085 Sum_probs=97.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchH
Q 011831 263 VFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNY 342 (476)
Q Consensus 263 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (476)
..+|.+.+++|.|+.+.+...+...++..++.++.|+++||+|||+.. ..+........ ......++ .
T Consensus 24 ~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l-------~~~~~~~~i~~----~~~~~~~~-~ 91 (392)
T PRK10473 24 VGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVA-------IPGAALFIIAS----LLCSLAET-S 91 (392)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHH-------HHHHHHHHHHH----HHHHHhCc-H
Confidence 568888888999999999999999999999999999999999998731 11111111111 11111222 2
Q ss_pred HHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhh
Q 011831 343 YTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEK 405 (476)
Q Consensus 343 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 405 (476)
....+..++.|++.+...+ ...+++.|.+|+++|+++.++.+....++..++|.+.+.+.+.
T Consensus 92 ~~~~~~~~l~g~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~ 153 (392)
T PRK10473 92 SLFLAGRFLQGIGAGCCYV-VAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK 153 (392)
T ss_pred HHHHHHHHHHHhhhhHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344455677777776666 5688899999999999999999999999999999998888765
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-10 Score=113.98 Aligned_cols=144 Identities=18% Similarity=0.194 Sum_probs=113.0
Q ss_pred HHHHHHHHHHhccchhhHHHHHHh-cCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHh
Q 011831 21 NLAAIMERADENLLPSVYKEVSEA-FNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGA 99 (476)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 99 (476)
.+..++............+.+.++ ++ ++.+.+++.+...++..++.+++++++||+|+|+++..+.++..++.++..+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~ 306 (437)
T TIGR00792 228 CLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFF 306 (437)
T ss_pred HHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444433 33 5566788888889999999999999999999999999999988888877766
Q ss_pred h-hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcC-------CCcchhhHHHHHhhhhhhhhhHHHHHHHHhhc
Q 011831 100 S-QHFLHVGMWRAVNGFGLAIVIPALQSFIADSYK-------DGVRGAGFGLLSLVGTMGGIGGGVLATIMAGH 165 (476)
Q Consensus 100 ~-~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~ 165 (476)
. ++.+.+++..++.|++.+...+...++++|..| ++++|..+++.+....+|..+++.+.+.+.+.
T Consensus 307 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~ 380 (437)
T TIGR00792 307 AGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI 380 (437)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 466777788889999999999999999999865 45679999999999999999999999999876
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.1e-11 Score=115.19 Aligned_cols=130 Identities=18% Similarity=0.204 Sum_probs=96.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchH
Q 011831 263 VFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNY 342 (476)
Q Consensus 263 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (476)
...|.+.+++|+++.+.+.+.+...++..++.++.|+++||+|||+.. ..+..+......+. ...++ .
T Consensus 16 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~-------~~~~~~~~~~~~~~----~~~~~-~ 83 (379)
T TIGR00881 16 LAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFL-------PIGLILCAIVNLFF----GFSTS-L 83 (379)
T ss_pred hhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehh-------HHHHHHHHHHHHHH----HHhhh-H
Confidence 346766667999999999999999999999999999999999999742 11111111111111 11122 3
Q ss_pred HHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhH-HHHHHHhh
Q 011831 343 YTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAP-LVGILSEK 405 (476)
Q Consensus 343 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~-~~g~l~~~ 405 (476)
..+.+..++.|++.+...+ ...+++.|.+|+++|+++.++.+....+|..++|. +.+.+.+.
T Consensus 84 ~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 146 (379)
T TIGR00881 84 WVMAALWALNGIFQGMGWP-PCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL 146 (379)
T ss_pred HHHHHHHHHHHhhccccCC-chHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc
Confidence 4455667778888777777 77889999999999999999999999999999995 55555444
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-09 Score=105.20 Aligned_cols=148 Identities=12% Similarity=0.077 Sum_probs=119.3
Q ss_pred hHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Q 011831 37 VYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFG 116 (476)
Q Consensus 37 ~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 116 (476)
..|.+.+++|.+..+.+++.+.+.++..++.++.+++.||.+++..+....+......++....++.+.+.+..++.|++
T Consensus 239 ~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~ 318 (394)
T PRK10213 239 IRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLT 318 (394)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34778888999999999999999999999999999999996444334433333444445545667788888889999999
Q ss_pred hhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHH
Q 011831 117 LAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFL 190 (476)
Q Consensus 117 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~ 190 (476)
.+...+..++++.+..| +++++..++.....++|..+|+.+++.+.+. .|++..+...+.+.++..+.
T Consensus 319 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~-----~g~~~~~~~~~~~~~~~~~~ 386 (394)
T PRK10213 319 FALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDN-----IGLTSPLMLSGTLMLLTALL 386 (394)
T ss_pred HHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cChhhHHHHHHHHHHHHHHH
Confidence 99999999999999886 6677888888889999999999999999987 89999998887766555443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.3e-10 Score=107.29 Aligned_cols=155 Identities=14% Similarity=0.026 Sum_probs=101.4
Q ss_pred chhhHHHH-HHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHH--h--hhhHHHHHH
Q 011831 34 LPSVYKEV-SEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVG--A--SQHFLHVGM 108 (476)
Q Consensus 34 ~~~~~~~i-~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~--~--~~~~~~l~~ 108 (476)
....+|.+ .+++|.+..+.++..+...++..+++++.|+++||+|||+.+..+.++.++...... . .++....+.
T Consensus 262 ~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (432)
T PRK10406 262 FTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFG 341 (432)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 34445654 456898888899989888888899999999999999999988776665443332221 1 122222222
Q ss_pred HHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhh-hhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHH
Q 011831 109 WRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTM-GGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLI 187 (476)
Q Consensus 109 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~l-G~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~ 187 (476)
.-.+.+++.+...+....+++|++|+|.|++++|+.+...++ .....|.+.+.+... ..|...++..++..++.
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~-----g~~~~~~~~~~~~~~i~ 416 (432)
T PRK10406 342 LVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSI-----GMETAFFWYVTLMAVVA 416 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHH
Confidence 223333344444456678899999999999999998766554 344477777766443 33666666666665555
Q ss_pred HHHhhe
Q 011831 188 AFLVLV 193 (476)
Q Consensus 188 ~~~~~~ 193 (476)
.+..++
T Consensus 417 ~~~~~~ 422 (432)
T PRK10406 417 FLVSLM 422 (432)
T ss_pred HHHHHH
Confidence 555444
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.8e-10 Score=104.54 Aligned_cols=180 Identities=14% Similarity=0.189 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHHhcC-CCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHH
Q 011831 19 LINLAAIMERADENLLPSVYKEVSEAFN-AGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAV 97 (476)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~ 97 (476)
...+..++.......+....+.+.+|.| .+.+..+.+.+...++-.+.-...+++..|+|.|+++.++.+.+++=..+.
T Consensus 211 ~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~ 290 (400)
T PF03825_consen 211 VFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLY 290 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 4444555556666666666777788887 677778888888888899999999999999999999999999999999998
Q ss_pred Hhh-hhHHHHHH----HHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHh-hhhhhhhhHHHHHHHHhhccc-CCC
Q 011831 98 GAS-QHFLHVGM----WRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSL-VGTMGGIGGGVLATIMAGHQF-WGV 170 (476)
Q Consensus 98 ~~~-~~~~~l~~----~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~lG~~~g~~~~~~l~~~~~-~~~ 170 (476)
+.. ++.+...+ ...++|+..+....++..++.+..|++.|+++.+++++ ..++|..+|..++|++.+..+ ...
T Consensus 291 a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~ 370 (400)
T PF03825_consen 291 AYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGM 370 (400)
T ss_pred HHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhh
Confidence 887 55444333 34579999999999999999999999999999999876 478999999999999998722 223
Q ss_pred CchhHHHHHHHHHHHHHHHHhheeeccC
Q 011831 171 PGWRCAFILMATLSVLIAFLVLVFVVDP 198 (476)
Q Consensus 171 ~~wr~~f~i~~~~~~~~~~~~~~~~~~~ 198 (476)
..|...+.+.+.+.++..++.+.+.+|+
T Consensus 371 ~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 371 FDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 4567777777777777766666665554
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.1e-10 Score=112.29 Aligned_cols=152 Identities=12% Similarity=0.084 Sum_probs=105.3
Q ss_pred hhHHHHHHHHHhh-hhhhhHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhh-hccccCCCcchhHhHH
Q 011831 243 PTFQIIVLQGIVG-SLPWTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADR-ISQAYPHSGRVMCAQF 319 (476)
Q Consensus 243 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~~~~~~ 319 (476)
|.++..+...+.. ...|+...+++.|+++ +|++..+++.+...+.....+..+++|+++|| +|||+.. ..
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~-------~~ 86 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTI-------VL 86 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHH-------HH
Confidence 3444444444444 3345556788999876 99999999888888887777888899999999 9999842 11
Q ss_pred HHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCcc--chhhHHHHHHhhhhhhhhhhhH
Q 011831 320 SAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAK--HRTMIYAFDRAFEGSFSSFAAP 397 (476)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~--~~g~~~g~~~~~~~~~~~~~~~ 397 (476)
+..+.......+. ... +....+.+...+.|++.+...+ ...+++.|.+|++ +|+.+.++.....++|..++|.
T Consensus 87 g~~~~~~g~~~~~--~~~--~~~~ll~~~~~l~~ig~g~~~~-~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~ 161 (489)
T PRK10207 87 GAIVLAIGYFMTG--MSL--LKPDLIFIALGTIAVGNGLFKA-NPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLS 161 (489)
T ss_pred HHHHHHHHHHHHH--Hhc--cchhHHHHHHHHHHhccccccC-CHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHH
Confidence 1211111111111 111 1122233456667777777776 6688999999877 4578999999999999999999
Q ss_pred HHHHHHhhh
Q 011831 398 LVGILSEKM 406 (476)
Q Consensus 398 ~~g~l~~~~ 406 (476)
+.|++.++.
T Consensus 162 l~g~l~~~~ 170 (489)
T PRK10207 162 LAPVIADKF 170 (489)
T ss_pred HHHHHHHhh
Confidence 999999884
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=112.94 Aligned_cols=177 Identities=14% Similarity=0.195 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcC--CchhHHHHHHHHHH
Q 011831 15 LSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYD--RPAVLTIGILCWAF 92 (476)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G--rr~~~~~~~~~~~~ 92 (476)
+.+..+.+...+......+....+|.+.++.+.+..+...+.++..+...++.+..|+++|+.. ++.+..++++..++
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl 377 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL 377 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH
Confidence 3456667777777777778888899999999999999999999999999999999999999988 45588889999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCc
Q 011831 93 STAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPG 172 (476)
Q Consensus 93 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~ 172 (476)
+...++++++++.+...-.+.|+..|.........+.|..+.++-..+.|+.....+++.++||++++++.+.. .+
T Consensus 378 ~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t----g~ 453 (509)
T KOG2504|consen 378 ARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT----GN 453 (509)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc----CC
Confidence 99999999999999999999999999999988889999999999999999999999999999999999888861 34
Q ss_pred hhHHHHHHHHHHHHHHHHhheee
Q 011831 173 WRCAFILMATLSVLIAFLVLVFV 195 (476)
Q Consensus 173 wr~~f~i~~~~~~~~~~~~~~~~ 195 (476)
|...|+.+++..++.+...+...
T Consensus 454 Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 454 YDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred eeeehhhcChHHHHHHHHHHHhH
Confidence 99999999998877776666554
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-09 Score=104.22 Aligned_cols=153 Identities=12% Similarity=0.060 Sum_probs=113.8
Q ss_pred hHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHh
Q 011831 37 VYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGA-SQHFLHVGMWRAVNGF 115 (476)
Q Consensus 37 ~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~G~ 115 (476)
..|.+.+.+|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++... .++.+...+..++.++
T Consensus 222 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 301 (382)
T PRK10091 222 IKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCA 301 (382)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345666678999999999999999999999999999999999999999988888888766544 4555666666677777
Q ss_pred hhhhhhhHHHHH-HhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhhee
Q 011831 116 GLAIVIPALQSF-IADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVF 194 (476)
Q Consensus 116 ~~~~~~~~~~~~-i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~ 194 (476)
+.....+..... ..+..+++.++.. ..+....+|..+||.+++.+.+. ..+|++.+.+.+..+++.......+
T Consensus 302 g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (382)
T PRK10091 302 GLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTL----GLAYNYVALPAALLSFAAMSSLLLY 375 (382)
T ss_pred HHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHc----ccCcchHHHHHHHHHHHHHHHHHHH
Confidence 665555544443 3444444555544 34667889999999999999884 1689999999877766655544443
Q ss_pred e
Q 011831 195 V 195 (476)
Q Consensus 195 ~ 195 (476)
.
T Consensus 376 ~ 376 (382)
T PRK10091 376 G 376 (382)
T ss_pred h
Confidence 3
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.5e-10 Score=111.64 Aligned_cols=135 Identities=17% Similarity=0.195 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHhhhhhhhhHHHHHHhhh
Q 011831 54 YLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHF--LHVGMWRAVNGFGLAIVIPALQSFIADS 131 (476)
Q Consensus 54 ~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 131 (476)
+......+....+.++.+++.||+|||+.+.++.++.+++.++..+.++. +...+.-++.+++.+...+....+.+|.
T Consensus 359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 438 (505)
T TIGR00898 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL 438 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33445566777888999999999999999999999999998888776544 4455566777777788888889999999
Q ss_pred cCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhheee
Q 011831 132 YKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFV 195 (476)
Q Consensus 132 ~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~ 195 (476)
+|++.|++++|+.+....+|.+++|.+.+ +.+ .++..++.+.++..++..++.++++
T Consensus 439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~lp 495 (505)
T TIGR00898 439 YPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE------KWLFLPLVLFGGLALLAGILTLFLP 495 (505)
T ss_pred ccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH------HHHhhHHHHHHHHHHHHHHHHHcCc
Confidence 99999999999999999999999999998 544 4778888888888777777666554
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.5e-10 Score=108.50 Aligned_cols=147 Identities=12% Similarity=0.138 Sum_probs=100.8
Q ss_pred HHHHHHHHHhhhhhhhHH-HHHHHHH-HHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHH
Q 011831 245 FQIIVLQGIVGSLPWTAM-VFFTMWF-ELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAF 322 (476)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 322 (476)
++...+..+.....+... .+.|.++ +++|+|+.+.++..+...++..++.++.|+++||+|||+.. ..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~-------~~~~~ 75 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTT-------TLSLL 75 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHH-------HHHHH
Confidence 344444444444444343 6778655 55999999999999999999999999999999999999732 11222
Q ss_pred hhhhHHHhhhhccccCc-chHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHH
Q 011831 323 MGIPFSWFLLTAIPQSV-SNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGI 401 (476)
Q Consensus 323 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~ 401 (476)
+........ ...+ + ...+.+..++.|++.+. .. ....++.|.+|+++|+++.++.....++|..+++.+.+.
T Consensus 76 ~~~i~~~~~----~~~~~~-~~~~~~~~~~~g~~~~~-~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~ 148 (366)
T TIGR00886 76 LLAIPCLWA----GLAVQS-YSVLLLLRLFIGIAGGS-FA-SCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPP 148 (366)
T ss_pred HHHHHHHHH----HHHhhh-HHHHHHHHHHHHHhchh-hH-hHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 211111111 1112 2 33344556667776443 33 356788999999999999999999999999999888887
Q ss_pred HHhh
Q 011831 402 LSEK 405 (476)
Q Consensus 402 l~~~ 405 (476)
+.+.
T Consensus 149 l~~~ 152 (366)
T TIGR00886 149 IIGS 152 (366)
T ss_pred HHHH
Confidence 7764
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.9e-08 Score=90.64 Aligned_cols=328 Identities=13% Similarity=0.019 Sum_probs=189.0
Q ss_pred hhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhh
Q 011831 52 LGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADS 131 (476)
Q Consensus 52 ~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 131 (476)
.+.+.-+-.+...+..+.+.+..+|+..+.=.....++..++.++.+++++.+.=+++-.+.+++.|........+.+ .
T Consensus 61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~ 139 (402)
T PF02487_consen 61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-F 139 (402)
T ss_pred chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-h
Confidence 344666666778888888899999998766667777788899999999999998889999999999988887777644 5
Q ss_pred cCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCC
Q 011831 132 YKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGEN 211 (476)
Q Consensus 132 ~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (476)
+++ ...+-++.+.+.+.++|+..-..+.+. ..+-|..+++...+.++..+..++.+++|+......+.++++
T Consensus 140 y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~----g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~ 211 (402)
T PF02487_consen 140 YGK----SSLSAWSSGTGGAGLVGALYYLGLTTL----GLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESED 211 (402)
T ss_pred cCc----cccccccCCcChhhHHHHHHHHHHHHh----CcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCCC
Confidence 543 357888888888889888887777653 145688888888887777766666666554332221111111
Q ss_pred CChhh-Hhh-----hcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhhhhhHH-HHHHHHH-HHhCCC-hhHHHHH
Q 011831 212 FDRDE-LVE-----KGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAM-VFFTMWF-ELIGFD-HSSTAAL 282 (476)
Q Consensus 212 ~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~g~s-~~~~g~~ 282 (476)
...+. ... +.+...+...++..+..+.+ ++..+-.......-|... ...|... .....+ ..+...+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~L-----l~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y 286 (402)
T PF02487_consen 212 EAEDDLLESETSESKPDSSSKLSFKEKLKRLKPL-----LWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWY 286 (402)
T ss_pred cccccccccccccccccccchhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHH
Confidence 10000 000 01111122223333322222 221111111222223332 2233332 111122 2344455
Q ss_pred HHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcc
Q 011831 283 LSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATA 362 (476)
Q Consensus 283 ~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 362 (476)
...+.++..+++--...+ |+ |+ +++......+-+.+..+- ......++ .++..+.++..|+..|..+.
T Consensus 287 ~~~YQ~GVFISRSS~~~~--ri--r~-----lwils~LQ~~nl~~~~l~-s~~~fips-i~ivf~lif~eGLlGGa~YV- 354 (402)
T PF02487_consen 287 QLLYQLGVFISRSSLPFF--RI--RR-----LWILSLLQVINLVFLLLQ-SWYRFIPS-IWIVFVLIFYEGLLGGASYV- 354 (402)
T ss_pred HHHHHHHHhhhhcceeee--eh--hh-----HHHHHHHHHHHHHHHHHH-HHHHHhhH-HHHHHHHHHHHHHhhhHHHH-
Confidence 566677776666543322 22 22 122222222211111111 11111222 34455677788888888887
Q ss_pred cccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhh
Q 011831 363 ANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEK 405 (476)
Q Consensus 363 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 405 (476)
.....+.|-.|+++|..++|.....-..|-.++..++-++...
T Consensus 355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~~ 397 (402)
T PF02487_consen 355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEPW 397 (402)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5566667778899999999999888777777777666555444
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-09 Score=99.03 Aligned_cols=160 Identities=14% Similarity=0.117 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHHHhccchhhHHHHHH---hcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHH
Q 011831 16 SLILINLAAIMERADENLLPSVYKEVSE---AFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAF 92 (476)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~ 92 (476)
......+..++..........-.+.+.+ .+|.++++.++..+.+..+..++.+..+++.||+|+||.+..+..+..+
T Consensus 141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~ 220 (310)
T TIGR01272 141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVL 220 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 3334444444443333333444444443 2689999999999999999999999999999999999999888888888
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCc
Q 011831 93 STAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPG 172 (476)
Q Consensus 93 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~ 172 (476)
+.++....++...+ ..-++.|++.+..+|...+...+..|+ +.+++.++. ....+|..+.|++.|.+.+. .|
T Consensus 221 ~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~-----~g 292 (310)
T TIGR01272 221 LSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADC-----LG 292 (310)
T ss_pred HHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHh-----cc
Confidence 77666655544333 355688999999999999999998854 456666775 56678999999999999987 78
Q ss_pred hhHHHHHHHHH
Q 011831 173 WRCAFILMATL 183 (476)
Q Consensus 173 wr~~f~i~~~~ 183 (476)
.+..|++..+.
T Consensus 293 ~~~a~~v~~~~ 303 (310)
T TIGR01272 293 IQLAFALPVPC 303 (310)
T ss_pred chHHHHHHHHH
Confidence 88888755443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.1e-10 Score=104.27 Aligned_cols=150 Identities=13% Similarity=0.233 Sum_probs=132.2
Q ss_pred CCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHH
Q 011831 48 GPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSF 127 (476)
Q Consensus 48 s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 127 (476)
+...+|.+.+..-+.-.+...+..++.+|+|.|+.++++..+.++=.++++++++.+.+.+.+.+.|+-.+....+...|
T Consensus 257 g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkY 336 (412)
T PF01306_consen 257 GNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKY 336 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCcchhhHHH-HHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCC
Q 011831 128 IADSYKDGVRGAGFGL-LSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKA 202 (476)
Q Consensus 128 i~~~~~~~~r~~~~~~-~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~ 202 (476)
+++.+|+|..++...+ .+...++|..+.+.++|.+.+. .|.+..|++.+.+.++..++..+.++++++..
T Consensus 337 I~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~-----~G~~~tylimg~iv~~~~li~~f~l~~~~~~~ 407 (412)
T PF01306_consen 337 ITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDR-----IGFQHTYLIMGLIVLPFTLISAFTLKKDKKQI 407 (412)
T ss_dssp HHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHS--SSSTT
T ss_pred HHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhh-----cCcHHHHHHHHHHHHHHHHHheeeecCCCccc
Confidence 9999998888888887 4789999999999999999998 89999999999998888888888877665543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-09 Score=100.15 Aligned_cols=175 Identities=15% Similarity=0.137 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHHhccchhhHH-HHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHH
Q 011831 17 LILINLAAIMERADENLLPSVYK-EVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTA 95 (476)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~ 95 (476)
.+.+++.++...-..-.++..+| .++++|+.++.+.|.+...+.+...+..+.+|+++||+|.+|++.......+++..
T Consensus 220 ~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~ 299 (417)
T COG2223 220 TWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAA 299 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHH
Confidence 34445555555444444555555 56678999999999999999999999999999999999999999999999999988
Q ss_pred HHHhhh-------hHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccC
Q 011831 96 AVGASQ-------HFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFW 168 (476)
Q Consensus 96 ~~~~~~-------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~ 168 (476)
+.++.+ +....+..-+..++..|........++...+ +++-|.+.|+..+..++|...-|..-+...+.+
T Consensus 300 ~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if-~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~t-- 376 (417)
T COG2223 300 LLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIF-PKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLT-- 376 (417)
T ss_pred HHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHH-HhhhhHHHHHHHHhccccccchhHHHHHHHHhc--
Confidence 887753 3444444334444444444445567888888 558899999999999999998898888888761
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhheeec
Q 011831 169 GVPGWRCAFILMATLSVLIAFLVLVFVV 196 (476)
Q Consensus 169 ~~~~wr~~f~i~~~~~~~~~~~~~~~~~ 196 (476)
.+++..|++.....++..++.+....
T Consensus 377 --g~~~~~f~~~~~~~~~a~v~~~~~y~ 402 (417)
T COG2223 377 --GSYTGAFMLLLAFYLVALVLTWALYA 402 (417)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35999999999988888777666543
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3e-10 Score=108.50 Aligned_cols=131 Identities=14% Similarity=0.095 Sum_probs=100.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchH
Q 011831 263 VFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNY 342 (476)
Q Consensus 263 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (476)
..+|.+.+++|+|+.+.+...+...++..++.++.|++.||+|||+. ...+............ ..++ .
T Consensus 12 p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-------~~~~~~~~~i~~~~~~----~~~~-~ 79 (377)
T PRK11102 12 PALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPV-------ILGGTLVFALAAVACA----LAQT-I 79 (377)
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHH-------HHHHHHHHHHHHHHHH----HHcc-H
Confidence 45788888899999999999999999999999999999999998873 1222222111111111 1122 2
Q ss_pred HHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 343 YTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 343 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
..+.+..++.|++.+...+ ...+++.|.+|+++|+++.++.+....++..++|.+.+.+.+..
T Consensus 80 ~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 142 (377)
T PRK11102 80 DQLIYMRFLHGLAAAAASV-VINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF 142 (377)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3345666777888777666 66788999999999999999999999999999999999998863
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=2e-09 Score=103.60 Aligned_cols=148 Identities=14% Similarity=0.200 Sum_probs=107.8
Q ss_pred HHHHHHhcCCCCCchhHHHHHHH-HHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHH---Hhh-hhHHHHHHHHH-
Q 011831 38 YKEVSEAFNAGPSDLGYLTFIRN-FVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAV---GAS-QHFLHVGMWRA- 111 (476)
Q Consensus 38 ~~~i~~~~~~s~~~~g~~~s~~~-l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~- 111 (476)
.+.+.+++|.++++++++.+... .+..++.+++|++.||+|+|+.+..+.++..+..+.. ++. ++.+.+++.-+
T Consensus 233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 312 (402)
T PRK11902 233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGI 312 (402)
T ss_pred HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 35577789999999999886654 5688999999999999999998877777666554433 343 45565555544
Q ss_pred ---HHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHH
Q 011831 112 ---VNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIA 188 (476)
Q Consensus 112 ---l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~ 188 (476)
..|++.+...+....++.+.+|.++ .++.+...++|..+++.+++.+.+. .||+..|.+.++++++..
T Consensus 313 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~-----~G~~~~f~~~~~~~~~~~ 383 (402)
T PRK11902 313 ENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEA-----YGWPGFYLMTVVIALPGL 383 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-----hChHHHHHHHHHHHHHHH
Confidence 4555556666666667776666544 4566666678887777899999998 899999999988887766
Q ss_pred HHhhee
Q 011831 189 FLVLVF 194 (476)
Q Consensus 189 ~~~~~~ 194 (476)
++.+..
T Consensus 384 ~~~~~~ 389 (402)
T PRK11902 384 ALLWLM 389 (402)
T ss_pred HHHHHH
Confidence 555443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-09 Score=120.19 Aligned_cols=145 Identities=19% Similarity=0.162 Sum_probs=125.5
Q ss_pred HHHHHhcCCCCC-chhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Q 011831 39 KEVSEAFNAGPS-DLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGL 117 (476)
Q Consensus 39 ~~i~~~~~~s~~-~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 117 (476)
+.+.+++|.+.. +.|++.+...++..++.++.|++.||+++|+++.++.++.+++.++..+..+.+.+++..++.|++.
T Consensus 257 ~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 336 (1146)
T PRK08633 257 AYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSA 336 (1146)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 455667899998 9999999999999999999999999999999999999999998888888889888888999999999
Q ss_pred hhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHH
Q 011831 118 AIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLI 187 (476)
Q Consensus 118 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~ 187 (476)
+...+...+++.+..|+++||+++++.+....+|.++++.+++.+... ..++...|++.+.+.++.
T Consensus 337 ~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~ 402 (1146)
T PRK08633 337 GLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGL----GLSPAGLFYLIALVTLIG 402 (1146)
T ss_pred HHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888888877643 146666776666554443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.4e-10 Score=113.05 Aligned_cols=131 Identities=15% Similarity=0.034 Sum_probs=102.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchH
Q 011831 263 VFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNY 342 (476)
Q Consensus 263 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (476)
...|.+.+++|.++.+.++..+...++..++.++.|++.||+|||+.. ..+..+...... .....++ .
T Consensus 23 ~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~-------~~~~~~~~~~~~----~~~~~~~-~ 90 (485)
T TIGR00711 23 VAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLF-------LISTFAFTLGSL----LCGVAPN-L 90 (485)
T ss_pred HHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHH-------HHHHHHHHHHHH----HHhCcCC-H
Confidence 567888888999999999999999999999999999999999999732 111111111111 1112223 3
Q ss_pred HHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 343 YTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 343 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
..+.+..++.|++.+...+ ...+++.|.+|+++|+++.++......++..++|.+.|++.++.
T Consensus 91 ~~l~~~~~~~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 153 (485)
T TIGR00711 91 ELMIIFRVIQGFGGGPLIP-LSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY 153 (485)
T ss_pred HHHHHHHHHHHhhhhhHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc
Confidence 4455677788888887776 67899999999999999999999999999999999999998863
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.2e-09 Score=101.65 Aligned_cols=140 Identities=11% Similarity=0.010 Sum_probs=112.5
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhh
Q 011831 40 EVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAI 119 (476)
Q Consensus 40 ~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 119 (476)
...+.+|.++.+.|++.+...++..++++..+++.||.++|+++..+. +.++...+.++.++++...+..++.|++.+.
T Consensus 231 ~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~ 309 (393)
T PRK11195 231 WAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGGF 309 (393)
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Confidence 455668999999999999999999999999999999999999888875 4455555566677888777888899999998
Q ss_pred hhhHHHHHHhhhcCCCc-chhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHH
Q 011831 120 VIPALQSFIADSYKDGV-RGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLS 184 (476)
Q Consensus 120 ~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~ 184 (476)
..+..++.+.+..|+++ +|++.++.+...++|..++..+.+.+... ...++..|...+.+.
T Consensus 310 ~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 371 (393)
T PRK11195 310 FVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKL----GVPVVAVIVGFGLLV 371 (393)
T ss_pred hhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHc----CCCHHHHHHHHHHHH
Confidence 88888888888766554 79999999999999999999999977653 134444444455443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-09 Score=103.69 Aligned_cols=133 Identities=14% Similarity=0.108 Sum_probs=108.6
Q ss_pred ccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhc-CCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 011831 32 NLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINY-DRPAVLTIGILCWAFSTAAVGASQHFLHVGMWR 110 (476)
Q Consensus 32 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 110 (476)
......+|.+.++.|.+..+.+++.+...++..+++++.|++.||+ +||+.+..+.++.+++.++..+.++.+... .-
T Consensus 214 ~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 292 (355)
T TIGR00896 214 YSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WA 292 (355)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HH
Confidence 3444557777788899999999999999999999999999999999 566677888888888887777765433332 45
Q ss_pred HHHHhhhhhhhhHHHHHHhhhcC-CCcchhhHHHHHhhhhhhhhhHHHHHHHHhhc
Q 011831 111 AVNGFGLAIVIPALQSFIADSYK-DGVRGAGFGLLSLVGTMGGIGGGVLATIMAGH 165 (476)
Q Consensus 111 ~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~ 165 (476)
++.|++.+...+...+.+.+..+ +++++...++.+....+|..++|.+.+++.++
T Consensus 293 ~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~ 348 (355)
T TIGR00896 293 LVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDI 348 (355)
T ss_pred HHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999998888787776554 56678999999988999999999999999986
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-09 Score=104.85 Aligned_cols=129 Identities=19% Similarity=0.101 Sum_probs=93.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHH
Q 011831 265 FTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYT 344 (476)
Q Consensus 265 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (476)
+|.+.+++|.++.+.+...+...++..++.++.|+++||++||+.. ..+..+..... +.. ...++ ...
T Consensus 29 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~-------~~~~~~~~~~~-~~~---~~~~~-~~~ 96 (401)
T PRK11043 29 FKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVL-------LAGLSLFALGS-LGM---LWVES-AAQ 96 (401)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHH-------HHHHHHHHHHH-HHH---HHhcC-HHH
Confidence 4445567999999999999999999999999999999999999732 11111111111 111 11222 233
Q ss_pred HHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 345 YAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 345 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
+.+..++.|++.+...+ ...+++.|.+|+++++...+..+....++..++|.+.+++.+..
T Consensus 97 l~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~ 157 (401)
T PRK11043 97 LLVLRFVQAVGVCSAAV-IWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF 157 (401)
T ss_pred HHHHHHHHHhhhHHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44555667776665555 45678889999888999999999888999999999999998874
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=105.24 Aligned_cols=149 Identities=14% Similarity=0.106 Sum_probs=107.8
Q ss_pred HHHHHHHhhhhhhhHH-HHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhh
Q 011831 247 IIVLQGIVGSLPWTAM-VFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGI 325 (476)
Q Consensus 247 ~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~ 325 (476)
.+...++.....++.. ...|.+.+++|.|+.+.|++.+...++..++++..|++.||+|+|+.. ..+..+..
T Consensus 7 ~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~-------~~g~~l~~ 79 (410)
T TIGR00885 7 LITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGI-------LLGLFLYA 79 (410)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH-------HHHHHHHH
Confidence 3333333333444444 567877777999999999999999999999999999999999999732 22222211
Q ss_pred hHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhh
Q 011831 326 PFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEK 405 (476)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 405 (476)
... ......... +.+..+.+..++.|++.+...+ ...+++.+..|++++++..++.+...++|..++|.+.+.+...
T Consensus 80 ~g~-~l~~~~~~~-~~~~~~l~~~~l~G~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~ 156 (410)
T TIGR00885 80 LGA-FLFWPAAEI-MNYTLFLVGLFILTAGLGFLET-AANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILS 156 (410)
T ss_pred HHH-HHHHHHHhh-ccHHHHHHHHHHHHhhHHHHHh-hhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111 111111112 2244566777888998888877 6778888889999999999999999999999999999988754
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.2e-09 Score=98.67 Aligned_cols=185 Identities=15% Similarity=0.086 Sum_probs=142.1
Q ss_pred hHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHH
Q 011831 13 ISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAF 92 (476)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~ 92 (476)
|+.....+.+......-+..........+-++-|++..+..+..........+..+++..+.||+|||+.++.+..+..+
T Consensus 268 R~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~ 347 (485)
T KOG0569|consen 268 RRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAV 347 (485)
T ss_pred hHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 33333333333333334444556667788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhh----hH--H---HHHHHHHHHHhhhhh-hhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHH
Q 011831 93 STAAVGASQ----HF--L---HVGMWRAVNGFGLAI-VIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIM 162 (476)
Q Consensus 93 ~~~~~~~~~----~~--~---~l~~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l 162 (476)
..+++.... .. | ..+++.++..++.+. ..|...-+.+|.+|++.|..++++......+...+-...-..+
T Consensus 348 ~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l 427 (485)
T KOG0569|consen 348 ALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPL 427 (485)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988877642 12 1 123444444444443 3578889999999999999999999999998888877777777
Q ss_pred hhcccCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCC
Q 011831 163 AGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKAS 203 (476)
Q Consensus 163 ~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~ 203 (476)
.+. .|= ..|++..+++++..+..++.+||++.+..
T Consensus 428 ~~~-----~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~ 462 (485)
T KOG0569|consen 428 QNV-----IGP-YVFILFVIPLAIFLIYLYRYLPETKGRTP 462 (485)
T ss_pred HHH-----hcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCH
Confidence 765 454 78888899999999999999999876543
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-09 Score=119.04 Aligned_cols=165 Identities=10% Similarity=-0.002 Sum_probs=128.7
Q ss_pred HHHHHHHHHHhccchhhHHHHH-HhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHh
Q 011831 21 NLAAIMERADENLLPSVYKEVS-EAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGA 99 (476)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~i~-~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 99 (476)
.+..+...+....+...+|.+. +.+|.+..+.|++.+.+.++..+++++.|+++|+.++++.+..+.++.+++.+..++
T Consensus 231 ~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 310 (1140)
T PRK06814 231 ILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAF 310 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHh
Confidence 3333333333333444455554 457999999999999999999999999999999988888777777666666655554
Q ss_pred h--------------------hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHH
Q 011831 100 S--------------------QHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLA 159 (476)
Q Consensus 100 ~--------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~ 159 (476)
. ++.+.+++..++.|++.+...+...+++.+.+|+++||+++|..+....+|..+++++.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~ 390 (1140)
T PRK06814 311 ASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIIL 390 (1140)
T ss_pred cccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHH
Confidence 3 67788888899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCCchhHHHHHHHHHHHHHHH
Q 011831 160 TIMAGHQFWGVPGWRCAFILMATLSVLIAF 189 (476)
Q Consensus 160 ~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~ 189 (476)
+.+... ..++...+++.++..++..+
T Consensus 391 g~l~~~----~~~~~~~~~~~~~~~~~~~~ 416 (1140)
T PRK06814 391 ALLQAL----GFSIPWIILFIALANLIVAI 416 (1140)
T ss_pred HHHHHh----ccCHHHHHHHHHHHHHHHHH
Confidence 998743 15777777766655444433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-09 Score=107.72 Aligned_cols=138 Identities=16% Similarity=0.062 Sum_probs=99.7
Q ss_pred hhhhhHH-HHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhc
Q 011831 256 SLPWTAM-VFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTA 334 (476)
Q Consensus 256 ~~~~~~~-~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (476)
..-.+.. .-+|.+.+++|.+..+.++..+.+.++...+.+..|+++||+|||+.. ..+..+.......+
T Consensus 19 ~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l-------~~~~~~~~~~~~~~--- 88 (495)
T PRK14995 19 AIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLL-------MLGGTLFGLASLAA--- 88 (495)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH-------HHHHHHHHHHHHHH---
Confidence 3333344 458998889999999999999999999999999999999999999742 22222211111111
Q ss_pred cccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcc-cCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 335 IPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEV-VPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
...++ ...+.+.-++.|++.+...+ .....+.+. .|+++|+++.|+......++..+||.++|.+.++.
T Consensus 89 -~~a~~-~~~li~~r~l~G~g~~~~~~-~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~ 158 (495)
T PRK14995 89 -AFSPT-ASWLIATRALLAIGAAMIVP-ATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF 158 (495)
T ss_pred -HHcCC-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 11223 34455666778888877666 445555454 47789999999999999999999999999999873
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.3e-08 Score=97.60 Aligned_cols=159 Identities=13% Similarity=0.115 Sum_probs=127.5
Q ss_pred hhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhh-cCCchhHHHHHHHHHHHHHHHHhhhh--------HHH
Q 011831 35 PSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVIN-YDRPAVLTIGILCWAFSTAAVGASQH--------FLH 105 (476)
Q Consensus 35 ~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~--------~~~ 105 (476)
......+.+.+|.+.++...+...+....-+...++|.++|+ +||++.+.++.++..++.++.+++.. ...
T Consensus 8 aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~ 87 (654)
T TIGR00926 8 TILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL 87 (654)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence 444556667789998888888888888888999999999996 79999999999999999988877421 233
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhhcCCC---cchhhHHHHHhhhhhhhhhHHHHHHHHhhccc--CCCCchhHHHHHH
Q 011831 106 VGMWRAVNGFGLAIVIPALQSFIADSYKDG---VRGAGFGLLSLVGTMGGIGGGVLATIMAGHQF--WGVPGWRCAFILM 180 (476)
Q Consensus 106 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~--~~~~~wr~~f~i~ 180 (476)
.+++-.+..+|.|++-|...+...|.++++ +|-+.+.++..+.++|..+++++..++.+... ....+|...|.+.
T Consensus 88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~ 167 (654)
T TIGR00926 88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVP 167 (654)
T ss_pred HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHH
Confidence 566778888999999999999999999754 36778889999999999999999998874310 0124799999999
Q ss_pred HHHHHHHHHHhhe
Q 011831 181 ATLSVLIAFLVLV 193 (476)
Q Consensus 181 ~~~~~~~~~~~~~ 193 (476)
++..++..++...
T Consensus 168 ~i~m~ia~lvf~~ 180 (654)
T TIGR00926 168 AILMILALIVFMA 180 (654)
T ss_pred HHHHHHHHHHHHH
Confidence 9888776665543
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-09 Score=103.04 Aligned_cols=122 Identities=11% Similarity=0.081 Sum_probs=100.7
Q ss_pred HHHhccchhhHHHHHHhcCCCCCchhHHHHHHH-HHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhh------
Q 011831 28 RADENLLPSVYKEVSEAFNAGPSDLGYLTFIRN-FVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGAS------ 100 (476)
Q Consensus 28 ~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~-l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~------ 100 (476)
...........|.+.+++|.++++.+.+.+... ++..++.+++|++.||+|||+.+..+.++.+++..+..+.
T Consensus 222 ~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 301 (356)
T TIGR00901 222 KLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHH 301 (356)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 333334445566666779999999998887765 5778999999999999999999998888888877766553
Q ss_pred -----hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhh
Q 011831 101 -----QHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGT 149 (476)
Q Consensus 101 -----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 149 (476)
++.+.+....++.+++.+...+...+++.|.+|+|+||+.+|+.+...+
T Consensus 302 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 302 DGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred cccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 4567778888999999999999999999999999999999999887665
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-09 Score=104.89 Aligned_cols=130 Identities=8% Similarity=0.010 Sum_probs=96.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchH
Q 011831 263 VFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNY 342 (476)
Q Consensus 263 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (476)
..+|.+.+++|.|+.+.+...+...++..++.++.|+++||+|||+.. ..+........... ...++ .
T Consensus 29 p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~-------~~~~~~~~~~~~~~----~~~~~-~ 96 (394)
T PRK11652 29 PAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVI-------LVGMSIFILGTLVA----LFAHS-L 96 (394)
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHH-------HHHHHHHHHHHHHH----HHHcc-H
Confidence 457778888999999999999999999999999999999999998732 11222111111111 11222 3
Q ss_pred HHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhh
Q 011831 343 YTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEK 405 (476)
Q Consensus 343 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 405 (476)
..+.+..++.|++.+...+ ....+..|.++.++++.+++..+....++..++|.+.+.+.+.
T Consensus 97 ~~l~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~ 158 (394)
T PRK11652 97 TVLIAASAIQGLGTGVGGV-MARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL 158 (394)
T ss_pred HHHHHHHHHHHhhhhHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566677777665555 5567778888889999999999999888999999999998876
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.7e-09 Score=95.49 Aligned_cols=145 Identities=14% Similarity=0.072 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhh----cCCch-hHHHHHHHHHH
Q 011831 18 ILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVIN----YDRPA-VLTIGILCWAF 92 (476)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr----~Grr~-~~~~~~~~~~~ 92 (476)
+.++...+...+....--...+++..++|++....+.+-....+...+.+|+.|..+|| +|||| .+..+.+..++
T Consensus 35 i~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~ 114 (498)
T KOG0637|consen 35 ISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAV 114 (498)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHH
Confidence 33333333333343344455677888899999988888888888899999999999995 89988 55666677778
Q ss_pred HHHHHHhhhhHHH-----------------HHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchh-hHHHHHhhhhhhhhh
Q 011831 93 STAAVGASQHFLH-----------------VGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGA-GFGLLSLVGTMGGIG 154 (476)
Q Consensus 93 ~~~~~~~~~~~~~-----------------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~lG~~~ 154 (476)
+.++..++.++.. ++++-.+.=++.-.....+.+++.|...++++.+ +++.+.....+|..+
T Consensus 115 ~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvL 194 (498)
T KOG0637|consen 115 SLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVL 194 (498)
T ss_pred HHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhccee
Confidence 8888888765543 3333444445666777888999999997777766 999999999999999
Q ss_pred HHHHHHHH
Q 011831 155 GGVLATIM 162 (476)
Q Consensus 155 g~~~~~~l 162 (476)
|..++++.
T Consensus 195 GY~~g~y~ 202 (498)
T KOG0637|consen 195 GYALGSYL 202 (498)
T ss_pred eeeccccc
Confidence 99988744
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.9e-06 Score=82.64 Aligned_cols=278 Identities=9% Similarity=0.039 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCC-----CCchhHHHHHHHHHHHhh-hhhhhHhhhhcCCchhHHHHHH
Q 011831 15 LSLILINLAAIMERADENLLPSVYKEVSEAFNAG-----PSDLGYLTFIRNFVQGLS-SPLAGVLVINYDRPAVLTIGIL 88 (476)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s-----~~~~g~~~s~~~l~~~~~-~~~~G~l~dr~Grr~~~~~~~~ 88 (476)
+.+....+..++..++.+. +.+++|.+..+ .+.+.++-+...+...+. .++.+++++|++|++++-....
T Consensus 7 ~k~~~~~l~fF~il~~Y~i----LR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~ 82 (472)
T TIGR00769 7 KKFLPLFLMFFCILFNYTI----LRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVIS 82 (472)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHH
Confidence 3444444555555554333 45677777653 357888888888877766 8999999999999999988888
Q ss_pred HHHHHHHHHHhh----h---------------------------hHHHHHHHHHHHHhhhhhhhh-HHHHHHhhhcCCCc
Q 011831 89 CWAFSTAAVGAS----Q---------------------------HFLHVGMWRAVNGFGLAIVIP-ALQSFIADSYKDGV 136 (476)
Q Consensus 89 ~~~~~~~~~~~~----~---------------------------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~ 136 (476)
.+....+++++. + +.|...+.-+...+-...... .-..+++|.++.+|
T Consensus 83 ~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~q 162 (472)
T TIGR00769 83 PFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDE 162 (472)
T ss_pred HHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 888877777665 1 123333444455555455554 67789999999999
Q ss_pred chhhHHHHHhhhhhhhhhHHHHHHHHhhccc---CCCCchh----HHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCC
Q 011831 137 RGAGFGLLSLVGTMGGIGGGVLATIMAGHQF---WGVPGWR----CAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTG 209 (476)
Q Consensus 137 r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~---~~~~~wr----~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (476)
-.|..+++..+.++|.++++.+..++.+... .....|. ..+.+.++.+++ .+...+..++......+.
T Consensus 163 akRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~-~~~~~~~l~~~~~~~~~~---- 237 (472)
T TIGR00769 163 AKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLA-IILLYWWVNRNVLTDPRS---- 237 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCccc----
Confidence 9999999999999999999999998874211 1113442 233444443333 333333333221111100
Q ss_pred CCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhhhhhHHHH-HHHHHHHhCCChhHH----HHHHH
Q 011831 210 ENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAMVF-FTMWFELIGFDHSST----AALLS 284 (476)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~----g~~~~ 284 (476)
.+.++ .++++.+ .....+..+.++++|..+.+.+...+.....+...+ .-..+++..-|+.+. |.+..
T Consensus 238 --~~~~~--~~~k~k~---k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~ 310 (472)
T TIGR00769 238 --YNPAL--KEKKVKP---KMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFST 310 (472)
T ss_pred --cchhh--ccccCCC---CCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 00000 0011111 234456777888999887776666655444444321 223333322333332 33444
Q ss_pred HHHhhhhhhhchhhhhhhhhcccc
Q 011831 285 LFAIGCAVGSFLGGVVADRISQAY 308 (476)
Q Consensus 285 ~~~~~~~~~~~~~g~l~dr~~~~~ 308 (476)
..++..++..++.+++.+|+|-+.
T Consensus 311 ~~gi~tl~~~l~~~~l~~~~Gw~~ 334 (472)
T TIGR00769 311 WTGVVSVTMMLLSGNVIRKYGWLT 334 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHH
Confidence 556666666666788999988775
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.2e-09 Score=103.21 Aligned_cols=137 Identities=12% Similarity=0.111 Sum_probs=93.4
Q ss_pred hhHH-HHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhh----hhccccCCCcchhHhHHHHHhhhhHHHhhhh
Q 011831 259 WTAM-VFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVAD----RISQAYPHSGRVMCAQFSAFMGIPFSWFLLT 333 (476)
Q Consensus 259 ~~~~-~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (476)
+... .+++.|++++|.++...+.+.....+.+++..++.|+++| |+||||+. ...+.........+...
T Consensus 20 ~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~------il~g~~~~~~~l~ll~~ 93 (477)
T TIGR01301 20 WALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPF------IAAGAALVAFAVILIGF 93 (477)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHH------HHHHHHHHHHHHHHHHh
Confidence 4444 6788899999999999999999999999999999999999 49999853 11111111111111111
Q ss_pred ccc----------cCcchH--HHHHHHHHHHHHHHHhhhcccccchhhcccCccch--hhHHHHHHhhhhhhhhhhhHHH
Q 011831 334 AIP----------QSVSNY--YTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHR--TMIYAFDRAFEGSFSSFAAPLV 399 (476)
Q Consensus 334 ~~~----------~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~--g~~~g~~~~~~~~~~~~~~~~~ 399 (476)
... .....+ ......+.+..++.+.... ...+++.|..|+++| +.++++.+...++|+.+++.++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~-p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g 172 (477)
T TIGR01301 94 AADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQG-PCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAG 172 (477)
T ss_pred CchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000111 2223334445556666666 468899999998765 6799999999999999999999
Q ss_pred HHH
Q 011831 400 GIL 402 (476)
Q Consensus 400 g~l 402 (476)
+..
T Consensus 173 ~~~ 175 (477)
T TIGR01301 173 AYS 175 (477)
T ss_pred HHH
Confidence 876
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-08 Score=89.86 Aligned_cols=369 Identities=10% Similarity=0.015 Sum_probs=210.4
Q ss_pred chHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhh-----hcCCchh-HHH
Q 011831 12 GISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVI-----NYDRPAV-LTI 85 (476)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~d-----r~Grr~~-~~~ 85 (476)
.....+..+.+.+.+.+...+... .+|.+.+.-|.|.++.+...-++ ..+ ..-++|.++.| |+||||. ++-
T Consensus 28 ~d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay-~P~-sLKllWaPiVDs~y~k~~GrrksWvvp 104 (510)
T KOG3574|consen 28 GDRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAY-WPF-SLKLLWAPIVDSVYSKRFGRRKSWVVP 104 (510)
T ss_pred hhhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhh-hHH-HHHHHHHhhhHHHHHHhhccccceeee
Confidence 344556667777888888877777 88999998888888877654332 222 34678999999 9999994 333
Q ss_pred HHHHHHHHHHHHHhh-----------hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhh
Q 011831 86 GILCWAFSTAAVGAS-----------QHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIG 154 (476)
Q Consensus 86 ~~~~~~~~~~~~~~~-----------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~ 154 (476)
+..+.+....+.+.. ++...+...-++.-+..+....+.-.+.-.+..+++.|-+......+.+.|..+
T Consensus 105 ~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL 184 (510)
T KOG3574|consen 105 CQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFL 184 (510)
T ss_pred hHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHh
Confidence 444444444443331 233333334566667777788888888888899999999988888888888777
Q ss_pred HHHHHHHHhhccc--------CCCCc---hhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCC
Q 011831 155 GGVLATIMAGHQF--------WGVPG---WRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNT 223 (476)
Q Consensus 155 g~~~~~~l~~~~~--------~~~~~---wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (476)
+..+--.+...+. ..+.| -..-.+..+.+.++...+..+..+|+++...++
T Consensus 185 ~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~~e------------------ 246 (510)
T KOG3574|consen 185 GNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVDEE------------------ 246 (510)
T ss_pred hcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhhhh------------------
Confidence 7655443332100 00011 112233344444555555555555444331110
Q ss_pred ccchhHHHHHHhhhhhccchhHHHHHHHHHhhhhhhhHH-HHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhh
Q 011831 224 SVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAM-VFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVAD 302 (476)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d 302 (476)
.....++..+-.+++++-|............-..+... ...+.-+-|.|.+..+-+++..+.--.+++.....|.+..
T Consensus 247 -~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta 325 (510)
T KOG3574|consen 247 -LELGIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLEHGVPKEELALIAVPLVPLQIALPLYIGKWTA 325 (510)
T ss_pred -hhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHHcCCChhHheeeeeehhhHHHhhhhhheeecC
Confidence 01112444555566777777766666555555554444 5567777789999888776653333334433333333322
Q ss_pred hhccccCCC--cchhHhHHHHHhhhhHHHhhhhccccCc-------chHHHHHHHHHHHHHHHHhhhcccccchhhcccC
Q 011831 303 RISQAYPHS--GRVMCAQFSAFMGIPFSWFLLTAIPQSV-------SNYYTYAVTLVLMGLTISWNATAANGPMFAEVVP 373 (476)
Q Consensus 303 r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p 373 (476)
. +|+... .+...- ...+.....+.+..-.... ......+....+.+...-..+. ...+..+++.|
T Consensus 326 ~--~~pl~~~lka~~~R---~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv-~~maf~aqisd 399 (510)
T KOG3574|consen 326 G--PRPLNVFLKAVPYR---LGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFV-SGMAFHAQISD 399 (510)
T ss_pred C--CCcchHHHHhhhHH---HHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHH-HHHHHHhhcCC
Confidence 1 111100 001111 1111111112221111111 1111122222233333332333 45677788899
Q ss_pred ccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhhc
Q 011831 374 AKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFG 408 (476)
Q Consensus 374 ~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~ 408 (476)
|...|+.+.+.|+..++|+..-..+..++.|..+.
T Consensus 400 p~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv 434 (510)
T KOG3574|consen 400 PAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLTV 434 (510)
T ss_pred cccCccHHHHHHHHHHhcCCcHHHHHHHhcccCce
Confidence 99999999999999999999988999999998543
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.7e-09 Score=95.66 Aligned_cols=164 Identities=27% Similarity=0.414 Sum_probs=134.9
Q ss_pred HHHHHHHHHHhccchhhHHHHHHhcCCCC--CchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHH
Q 011831 21 NLAAIMERADENLLPSVYKEVSEAFNAGP--SDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVG 98 (476)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~--~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~ 98 (476)
....+....+........+.+.++++.+. .+.++..+.+.++..++.++.|.+.||+|||+.+..+.....++.++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 87 (338)
T COG0477 8 ALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLA 87 (338)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHH
Confidence 33344444666677788888888888766 4789999999999999999999999999999988888877666677777
Q ss_pred hhhh--HHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCC-CcchhhHHHHHh-hhhhhhhhHHHHHHHHhhcccCCCCchh
Q 011831 99 ASQH--FLHVGMWRAVNGFGLAIVIPALQSFIADSYKD-GVRGAGFGLLSL-VGTMGGIGGGVLATIMAGHQFWGVPGWR 174 (476)
Q Consensus 99 ~~~~--~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~lG~~~g~~~~~~l~~~~~~~~~~wr 174 (476)
+..+ .+.+++.|+++|++.+...+...+++.|++|+ ++|+...+.... ...+|..+++.+++.+... ...+||
T Consensus 88 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 164 (338)
T COG0477 88 LAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA---LLWGWR 164 (338)
T ss_pred hCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcchH
Confidence 7766 89999999999999999999999999999987 689999999888 5888999999888777653 336899
Q ss_pred HHHHHHHHHHHHH
Q 011831 175 CAFILMATLSVLI 187 (476)
Q Consensus 175 ~~f~i~~~~~~~~ 187 (476)
+.|.+........
T Consensus 165 ~~~~~~~~~~~~~ 177 (338)
T COG0477 165 AAFLLAALLGLLL 177 (338)
T ss_pred HHHHHHHHHHHHH
Confidence 9777776665443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-08 Score=87.59 Aligned_cols=177 Identities=14% Similarity=0.118 Sum_probs=126.1
Q ss_pred hHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHH-HH
Q 011831 13 ISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILC-WA 91 (476)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~-~~ 91 (476)
..+.+..+++.+....+.....++ ..+++.+|+|+...+.+.+......++.+++.|.++||+|++...+.+..+ +.
T Consensus 265 pfw~~~iicv~yyva~fPFi~lg~--~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl 342 (459)
T KOG4686|consen 265 PFWVLVIICVLYYVAWFPFITLGP--MFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTL 342 (459)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhH--HHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHH
Confidence 445566666666655554433332 467889999999999999999999999999999999999999866655444 44
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCC
Q 011831 92 FSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVP 171 (476)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~ 171 (476)
++-....| +++.=+++..+.|+............++...|+++.|++.|..+...++|..+.|++++.+.+.. +.+
T Consensus 343 ~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~--g~y 418 (459)
T KOG4686|consen 343 LGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGD--GSY 418 (459)
T ss_pred HHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCC--Cch
Confidence 44444443 23333556678888877666667788888999999999999999999999999999999999862 224
Q ss_pred chhHHHHH-HHHHHHHHHHHhheeec
Q 011831 172 GWRCAFIL-MATLSVLIAFLVLVFVV 196 (476)
Q Consensus 172 ~wr~~f~i-~~~~~~~~~~~~~~~~~ 196 (476)
.|--.|.+ .+.+++ ..+..++...
T Consensus 419 ~~le~ffl~~~~~aL-~svgil~~~N 443 (459)
T KOG4686|consen 419 DNLEAFFLIIGLMAL-TSVGILFYLN 443 (459)
T ss_pred hhHHHHHHHHHHHHH-HHHHHHhhee
Confidence 45555544 444443 3333344333
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.2e-09 Score=101.53 Aligned_cols=128 Identities=16% Similarity=0.040 Sum_probs=94.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHH
Q 011831 265 FTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYT 344 (476)
Q Consensus 265 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (476)
+|...+++|.+..+.+...+.+.++..++.++.|+++||+|||+.. ..+..+..... +. ....++ ...
T Consensus 39 l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l-------~~~~~~~~~~~-~~---~~~a~~-~~~ 106 (413)
T PRK15403 39 IINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVL-------ITGALIFTLAC-AA---TLFTTS-MTQ 106 (413)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHH-------HHHHHHHHHHH-HH---HHHcCC-HHH
Confidence 5565667999999999999999999999999999999999999732 11121111111 11 111223 334
Q ss_pred HHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhh
Q 011831 345 YAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEK 405 (476)
Q Consensus 345 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 405 (476)
+.+.-++.|++.+...+ .....+.|.+|++++++++++.+....++..++|.+++.+.+.
T Consensus 107 l~~~r~l~Gi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~ 166 (413)
T PRK15403 107 FLIARFIQGTSICFIAT-VGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF 166 (413)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666777877765444 5567888999999999999999999999999999999998876
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-08 Score=95.60 Aligned_cols=165 Identities=12% Similarity=0.079 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCc---hh-HHHHHHHHHH
Q 011831 17 LILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRP---AV-LTIGILCWAF 92 (476)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr---~~-~~~~~~~~~~ 92 (476)
+..+.+..++.......+..-+|.+.++.|.+.. .+...++..+...++ .++++||.+|| +. .....++.++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~ 269 (368)
T TIGR00903 194 LWIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAA 269 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHH
Confidence 3444445555555555555567877788777654 566655555555544 47777777653 33 3224444455
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCc
Q 011831 93 STAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPG 172 (476)
Q Consensus 93 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~ 172 (476)
...+.++..+.+..++.-.+.|++.....+...++.+|.+|++.|++++|+.+....+|.+++|++.+.+.. +
T Consensus 270 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-------~ 342 (368)
T TIGR00903 270 FFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-------S 342 (368)
T ss_pred HHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-------C
Confidence 444555555555555555677777777778888999999999999999999999999999999999987762 5
Q ss_pred hhHHHHHHHHHHHHHHHHhh
Q 011831 173 WRCAFILMATLSVLIAFLVL 192 (476)
Q Consensus 173 wr~~f~i~~~~~~~~~~~~~ 192 (476)
-+..|.+.+++.++.++..+
T Consensus 343 ~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 343 AEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67778777777777666654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-08 Score=100.39 Aligned_cols=177 Identities=19% Similarity=0.152 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHHhccchhhHHHH-HHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhH--------HHH
Q 011831 16 SLILINLAAIMERADENLLPSVYKEV-SEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVL--------TIG 86 (476)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~--------~~~ 86 (476)
.+....+..+............+|.+ .+++|.+..+.+++.+...++..++.++.|+++||+++|+.. ..+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 341 (465)
T TIGR00894 262 PVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNG 341 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 34455555555555555555566655 456899999999999999999999999999999998755321 111
Q ss_pred HHHH--HHHHHHHHh-hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHh
Q 011831 87 ILCW--AFSTAAVGA-SQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMA 163 (476)
Q Consensus 87 ~~~~--~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~ 163 (476)
.... ++..++... ..+....++.-.+.+.+.+...+.......|..| +.+|.+.++.+....+|..++|.+.+.+.
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~ 420 (465)
T TIGR00894 342 IGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNIL 420 (465)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheee
Confidence 1111 111111111 2234444444455555555555555555566664 58999999999999999999999999887
Q ss_pred hcccCCCCchhHHHHHHHHHHHHHHHHhheee
Q 011831 164 GHQFWGVPGWRCAFILMATLSVLIAFLVLVFV 195 (476)
Q Consensus 164 ~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~ 195 (476)
+.. ...+|+..|.+.++..++..++.....
T Consensus 421 ~~~--~~~~~~~~f~~~~~~~~i~~i~~~~~~ 450 (465)
T TIGR00894 421 SQD--SKNVWLIVFLIMAFVNILCVIFYLIFG 450 (465)
T ss_pred CCC--CchHHHHHHHHHHHHHHHHHHHeeeee
Confidence 641 113499999999888777666555443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.3e-09 Score=104.80 Aligned_cols=145 Identities=14% Similarity=0.110 Sum_probs=109.4
Q ss_pred HHHHHHHHHHhccchhhHHHHHH-hcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHh
Q 011831 21 NLAAIMERADENLLPSVYKEVSE-AFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGA 99 (476)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 99 (476)
.+..++............|.+.+ .+|.++...++......++..++.++++++.||+|+|+++.++.++..++.++..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~ 313 (448)
T PRK09848 234 CIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFW 313 (448)
T ss_pred HHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344454433 45655544444444446778889999999999999999999999998888877776
Q ss_pred hh--hHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCC-------cchhhHHHHHhhhhhhhhhHHHHHHHHhhc
Q 011831 100 SQ--HFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDG-------VRGAGFGLLSLVGTMGGIGGGVLATIMAGH 165 (476)
Q Consensus 100 ~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~ 165 (476)
.+ +++.+++..++.|+|.+...+...++.+|..|.+ ++|...+..+....+|..+|+.+.+.+.+.
T Consensus 314 ~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~ 388 (448)
T PRK09848 314 VSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL 388 (448)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 6777777788999999999999999999988654 359999999999999999999999988765
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.2e-08 Score=97.11 Aligned_cols=140 Identities=11% Similarity=-0.045 Sum_probs=113.2
Q ss_pred HHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhh
Q 011831 42 SEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVI 121 (476)
Q Consensus 42 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 121 (476)
++++|.++.+.++....+.++..++.++.|++.||+|+|+++..+.++..++.++..+.++.+. +..-.+.|++.+..+
T Consensus 287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~glg~~~i~ 365 (438)
T PRK10133 287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVG-LIALTLCSAFMSIQY 365 (438)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999998888777776666655432 445678999999999
Q ss_pred hHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCc-hhHHHHHHHHHHHHHHH
Q 011831 122 PALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPG-WRCAFILMATLSVLIAF 189 (476)
Q Consensus 122 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~-wr~~f~i~~~~~~~~~~ 189 (476)
|...+...+..|+ +.+.+.++... ..+|..++|.+.+.+.+. .| -|..|++..+..+....
T Consensus 366 P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~-----~g~~~~~~~v~~~~~~~~~~ 427 (438)
T PRK10133 366 PTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDA-----AGNIPTAELIPALCFAVIFI 427 (438)
T ss_pred HHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHh-----ccchHHHHHHHHHHHHHHHH
Confidence 9999999998754 56778887764 447888899999999886 66 78888876655444333
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-08 Score=100.33 Aligned_cols=135 Identities=10% Similarity=-0.020 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccc-c
Q 011831 259 WTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIP-Q 337 (476)
Q Consensus 259 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 337 (476)
|....+.|...+++|+|..+.+.+....... ....+..|++.||+|+|+. ..++.++.........+... .
T Consensus 44 y~fsv~s~~L~~~lgls~~~l~~i~svg~~~-g~~~lp~G~L~Dr~G~R~v-------llig~ll~~iG~ll~ala~~~~ 115 (591)
T PTZ00207 44 YAFNLISGAMQARYNLTQRDLSTITTVGIAV-GYFLLPYSFIYDYLGPRPI-------FVLSMTVFCLGTLLFALTFQEV 115 (591)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcHHH-------HHHHHHHHHHHHHHHHHHhccc
Confidence 4444566766667999999999887664333 3456678999999999973 22222222222111111111 0
Q ss_pred CcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhh-hhHHHHHHH
Q 011831 338 SVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSF-AAPLVGILS 403 (476)
Q Consensus 338 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~-~~~~~g~l~ 403 (476)
.....+.+.+..++.|++.+...+ .....+.+.+| ++||++.|+......+|+++ ++...+.+.
T Consensus 116 i~~s~~~l~l~r~l~G~G~~~~~~-~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~ 180 (591)
T PTZ00207 116 IEGSVVRLSVYNGLMTLGCMLFDL-GAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS 180 (591)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012344455667778888776666 45666788887 78999999999999999985 444444443
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.7e-10 Score=104.79 Aligned_cols=125 Identities=15% Similarity=0.151 Sum_probs=100.8
Q ss_pred hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHH
Q 011831 272 IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVL 351 (476)
Q Consensus 272 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (476)
++.++...|++.....+...+.+++.|++.||+.|++.+. .+..+..+..+..... ...+.+.++=.+
T Consensus 63 fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~-----------vG~~iW~~Av~~~~fs-~~Fwq~~l~R~~ 130 (493)
T KOG1330|consen 63 FNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIA-----------VGIFIWTLAVFASGFS-NHFWQVLLCRGF 130 (493)
T ss_pred cCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEe-----------eHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 8999999999999999999999999999999999998431 1111111111111112 345667778889
Q ss_pred HHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhhcC
Q 011831 352 MGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGY 409 (476)
Q Consensus 352 ~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~ 409 (476)
.|+|.+...+ +..++++|.+|.++|+++.++.+.....|+.+|-..++.+.+..+.|
T Consensus 131 vGiGeAs~~~-ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~W 187 (493)
T KOG1330|consen 131 VGIGEASYSP-IAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWW 187 (493)
T ss_pred hccchhhhcc-cchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccce
Confidence 9999999888 99999999999999999999999999999999999998888887655
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.8e-10 Score=98.40 Aligned_cols=119 Identities=17% Similarity=0.063 Sum_probs=88.9
Q ss_pred hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHH
Q 011831 272 IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVL 351 (476)
Q Consensus 272 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (476)
.+.+..-+|++-+.+.++.++.++.+|.++||+|||.. +.++.....+.+.....+.+ +..+...=++
T Consensus 63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpv-----------ll~c~~~va~s~ll~~~S~~-F~afv~aR~l 130 (451)
T KOG2615|consen 63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPV-----------LLACLIGVALSYLLWALSRN-FAAFVLARFL 130 (451)
T ss_pred ccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHH-----------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 34466778999999999999999999999999999963 11222222222222222222 3334444567
Q ss_pred HHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHh
Q 011831 352 MGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSE 404 (476)
Q Consensus 352 ~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 404 (476)
.|+..+-... ..++++|++++++|+.+++.++...++|..+||.++|++..
T Consensus 131 ~Gi~kgnl~v--~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 131 GGIFKGNLSV--IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred hhhccCchHH--HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 7777665554 68999999999999999999999999999999999999988
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.5e-06 Score=80.07 Aligned_cols=382 Identities=10% Similarity=0.013 Sum_probs=199.7
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHHh--cCCCCCchhHHHHHHHHHHHhhhhhhhHhhh-----hcCCchhHHH-HHHHH
Q 011831 19 LINLAAIMERADENLLPSVYKEVSEA--FNAGPSDLGYLTFIRNFVQGLSSPLAGVLVI-----NYDRPAVLTI-GILCW 90 (476)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~d-----r~Grr~~~~~-~~~~~ 90 (476)
++.+.+++.+...+.....+|.+.++ -+.|.+|.+.+.-+ ...+. .-++|.++.| |+||||..++ .-.+.
T Consensus 4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla-~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~ 81 (544)
T PF13000_consen 4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLA-SYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYLS 81 (544)
T ss_pred HHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeee-echhH-HHHhhhhhhhhhcccccCCcchhhhHHHHHH
Confidence 45566777777766665677888888 68888887754321 12222 3455666666 8999995332 33333
Q ss_pred HHHHHHHHhhh----------------------h--HHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHh
Q 011831 91 AFSTAAVGASQ----------------------H--FLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSL 146 (476)
Q Consensus 91 ~~~~~~~~~~~----------------------~--~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 146 (476)
++..+..+..- + ...+...-++.=+-.+....+.-.+.-....+++++.+......
T Consensus 82 g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtv 161 (544)
T PF13000_consen 82 GILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTV 161 (544)
T ss_pred HHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHh
Confidence 33333322211 0 11222333333344455556667777777889999998888888
Q ss_pred hhhhhhhhHHHHHHHHhhccc--------CCCC---chhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCC--C-CC
Q 011831 147 VGTMGGIGGGVLATIMAGHQF--------WGVP---GWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTG--E-NF 212 (476)
Q Consensus 147 ~~~lG~~~g~~~~~~l~~~~~--------~~~~---~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~ 212 (476)
+.+.|..++..+--.+-+... ..+. .-..-....+.+.++..+...++.+|++......+.++ + +.
T Consensus 162 G~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~~~~~ 241 (544)
T PF13000_consen 162 GQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPINKSDG 241 (544)
T ss_pred HhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCccccccccccc
Confidence 888888777666544432200 0011 11222334455555666666777766543322111110 0 00
Q ss_pred ChhhH--h-hhcC---CccchhHHHHHHhhhhhccchhHHHHHHHHHhhhhhhhHH-HHHHHHHHHhCCChhHHHHHHHH
Q 011831 213 DRDEL--V-EKGN---TSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAM-VFFTMWFELIGFDHSSTAALLSL 285 (476)
Q Consensus 213 ~~~~~--~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~g~~~~~ 285 (476)
+.++. + .+++ ..+....++..+.....+|-|.+..+++.....-..+... .-...=+-|.|++..+.+.+..+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlEkG~~KE~LAl~~li 321 (544)
T PF13000_consen 242 KSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLEKGLSKEDLALLVLI 321 (544)
T ss_pred cccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHHcCCCHHHhHHHHHH
Confidence 00000 0 0111 1111234555566667778888888777776666655544 34455566899998887666443
Q ss_pred HHhhhhhhhchhhhhhhhhccccC-C--------------C-c----------chhHh-HHHHHhhhhHHHhhhhccccC
Q 011831 286 FAIGCAVGSFLGGVVADRISQAYP-H--------------S-G----------RVMCA-QFSAFMGIPFSWFLLTAIPQS 338 (476)
Q Consensus 286 ~~~~~~~~~~~~g~l~dr~~~~~~-~--------------~-~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~ 338 (476)
.++..++.|+++.|+.+.+. . + . +.++- ..+-+.............+..
T Consensus 322 ----~~P~qii~~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~fP~~ 397 (544)
T PF13000_consen 322 ----DFPFQIILPYYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYFFPSD 397 (544)
T ss_pred ----hhhHHHHHHHHhhhhhcCCCccccccccccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHHheEEeCCCC
Confidence 34444444554444422111 0 0 0 00000 011111111111111222211
Q ss_pred c---c-hHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhh
Q 011831 339 V---S-NYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMF 407 (476)
Q Consensus 339 ~---~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~ 407 (476)
. . .+.++++.-.+.-+.....+. ...++-+++.+|..-|+.+-+.|++.|+||..-..+.=++.|...
T Consensus 398 g~v~~~Yf~lvI~~~~l~sf~stvmFV-ai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT 469 (544)
T PF13000_consen 398 GPVPTYYFLLVIIQHVLSSFMSTVMFV-AIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFT 469 (544)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhcc
Confidence 1 1 112122222222222222333 456667788889999999999999999999988888888888753
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.9e-08 Score=94.63 Aligned_cols=125 Identities=13% Similarity=0.094 Sum_probs=96.1
Q ss_pred HHHHHHHhCCChhH-HHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHH
Q 011831 265 FTMWFELIGFDHSS-TAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYY 343 (476)
Q Consensus 265 ~~~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (476)
.|.+.+++|+++.+ .|.+.+....+..+..+..|++.||+|.|+.. ..+.+....+..+.. .. ....
T Consensus 49 ~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL-------~l~~l~Wsl~t~L~~----fa-~Sl~ 116 (511)
T TIGR00806 49 TPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVL-------VLQALSFVCVWLLLL----LG-TSVW 116 (511)
T ss_pred HHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHH-------HHHHHHHHHHHHHHH----HH-HHHH
Confidence 45555579999999 99999999999999999999999999999731 111111111111111 11 2245
Q ss_pred HHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHH
Q 011831 344 TYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILS 403 (476)
Q Consensus 344 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~ 403 (476)
.+.+.-++.|++.+... ....++.+.+|+++|++++|+.+....+|.++++++.+++.
T Consensus 117 ~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~ 174 (511)
T TIGR00806 117 HMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV 174 (511)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888999888777 36888999999999999999999999999999999999944
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.4e-08 Score=95.87 Aligned_cols=150 Identities=16% Similarity=0.118 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHH
Q 011831 16 SLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTA 95 (476)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~ 95 (476)
.+..+.+..++............+.+.++.--++...+.+.....++..++.+++++++||+|+|+.+..+.++.+++.+
T Consensus 226 ~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~ 305 (428)
T PF13347_consen 226 PFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFL 305 (428)
T ss_pred hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHH
Confidence 34455566666666666666667777666433446788888999999999999999999999999999999999999999
Q ss_pred HHHhhh--hHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCC-------CcchhhHHHHHhhhhhhhhhHHHHHHHHhhc
Q 011831 96 AVGASQ--HFLHVGMWRAVNGFGLAIVIPALQSFIADSYKD-------GVRGAGFGLLSLVGTMGGIGGGVLATIMAGH 165 (476)
Q Consensus 96 ~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~ 165 (476)
+..+.+ |.+.+++.-++.|++.+...+...++++|..+. ++.|..++..+....+|..+++.+.+.+.+.
T Consensus 306 ~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~ 384 (428)
T PF13347_consen 306 LLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL 384 (428)
T ss_pred HHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999886 999999999999999999999999999998863 4468899999999999999999999988765
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.1e-09 Score=92.48 Aligned_cols=135 Identities=15% Similarity=0.207 Sum_probs=107.6
Q ss_pred HHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchh
Q 011831 60 NFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGA 139 (476)
Q Consensus 60 ~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~ 139 (476)
.+.-.-|.++.+++.||+|||+.|..+.+++++..++.-.+.+-....+.-+..-++..+.+.+.+.|..|.+|.+-|+.
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat 470 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT 470 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence 45667889999999999999999999999999999988887654444444444444455556667899999999999999
Q ss_pred hHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCC
Q 011831 140 GFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKK 201 (476)
Q Consensus 140 ~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~ 201 (476)
..|.-+...-+|.++.|.++ ...+ .+-..+..+.+...++.++...+++-|++.+
T Consensus 471 gvGtcSsmaRIggI~~p~iA-~~~e------~s~sl~i~vy~~~~ilagIavcffPiEtkGR 525 (528)
T KOG0253|consen 471 GVGTCSSMARIGGIFSPVIA-MRAE------LSTSLPIFVYGALFILAGIAVCFFPIETKGR 525 (528)
T ss_pred chhhhhhHHhhhhhhhhHHH-HHhc------cceeehHHHHHHHHHHHHHHheeeeeccCCC
Confidence 99999999999999999999 3333 3445667777888888888888888777643
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.7e-09 Score=106.61 Aligned_cols=145 Identities=8% Similarity=0.022 Sum_probs=103.7
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhh--h---------
Q 011831 264 FFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFL--L--------- 332 (476)
Q Consensus 264 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------- 332 (476)
-++.+-++++++..+.|++.+.+.++.+++.++.+++.||.+||+......++..++.++....-.+. +
T Consensus 55 ~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~ 134 (633)
T TIGR00805 55 SLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSST 134 (633)
T ss_pred hchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccc
Confidence 35555566999999999999999999999999999999999998854322222211111110000000 0
Q ss_pred ---------hcccc-----------------C--cchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHH
Q 011831 333 ---------TAIPQ-----------------S--VSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFD 384 (476)
Q Consensus 333 ---------~~~~~-----------------~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~ 384 (476)
..... . ...+..+.+.-++.|++.+...+ ...+++.|.+|+++|+...|+.
T Consensus 135 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~-~~~~~i~d~~~~~~~~~~~~i~ 213 (633)
T TIGR00805 135 GNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFP-LGISYIDDFAKSKNSPLYIGIL 213 (633)
T ss_pred ccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchh-cCchhhhccCCccccHHHHHHH
Confidence 00000 0 11244566778899999888877 8889999999999999999999
Q ss_pred HhhhhhhhhhhhHHHHHHHhhhhcC
Q 011831 385 RAFEGSFSSFAAPLVGILSEKMFGY 409 (476)
Q Consensus 385 ~~~~~~~~~~~~~~~g~l~~~~~~~ 409 (476)
+....+|..+|+.+++++.+....+
T Consensus 214 ~~~~~iG~~lG~llgg~l~~~~~d~ 238 (633)
T TIGR00805 214 ESIAVFGPAFGYLLGSFCLQIYVDT 238 (633)
T ss_pred HHHHHhhhHHHHHHHHHHHhccccc
Confidence 9999999999999999998765433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=100.47 Aligned_cols=147 Identities=11% Similarity=0.021 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHH
Q 011831 19 LINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVG 98 (476)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~ 98 (476)
.+....++............+.+.+....+....+++.+...++..++.+++++++||+|+|+.+..+.++..++.+...
T Consensus 235 ~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~ 314 (473)
T PRK10429 235 CLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLL 314 (473)
T ss_pred HHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444455554433555677777777788999999999999999999999988887776665543
Q ss_pred h-----hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcC-------CCcchhhHHHHHhhhhhhhhhHHHHHHHHhhc
Q 011831 99 A-----SQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYK-------DGVRGAGFGLLSLVGTMGGIGGGVLATIMAGH 165 (476)
Q Consensus 99 ~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~ 165 (476)
+ .++.+.+++.-++.|++.+...+...++++|..| +++.|..++......-+|..+++.+.+++.+.
T Consensus 315 ~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~ 393 (473)
T PRK10429 315 LMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGL 393 (473)
T ss_pred HHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3456677777889999999999999999999965 33446688999999999999999999998865
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.1e-08 Score=83.13 Aligned_cols=323 Identities=15% Similarity=0.132 Sum_probs=169.8
Q ss_pred chhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 011831 34 LPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVN 113 (476)
Q Consensus 34 ~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 113 (476)
.+|..-.+-+.++....++|.+.-...-..++...+.|.++|+-|||+..+.-++.+.+++ +.-.++.|-.++++|.+.
T Consensus 56 QgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LG 134 (454)
T KOG4332|consen 56 QGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLG 134 (454)
T ss_pred cCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhh
Confidence 3444445556788888999988877777778888999999999999997655555444433 234478889999999999
Q ss_pred HhhhhhhhhHHHHH-HhhhcCCCcchhhHHHH--------HhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHH
Q 011831 114 GFGLAIVIPALQSF-IADSYKDGVRGAGFGLL--------SLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLS 184 (476)
Q Consensus 114 G~~~~~~~~~~~~~-i~~~~~~~~r~~~~~~~--------~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~ 184 (476)
|+..+....+-.++ ++|.. ++|+.-.-+. ..+..+=.+++.+.+-.+.++. ..|--.+|-..+.+.
T Consensus 135 GiaTsLLFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~---slGPVAPFdAAacfL 209 (454)
T KOG4332|consen 135 GIATSLLFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTF---SLGPVAPFDAAACFL 209 (454)
T ss_pred hHHHHHHHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHh---ccCCCCchHHHHHHH
Confidence 99999888776664 56655 2333222111 1334444455566666666552 134444554433332
Q ss_pred HHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHH-HHHHHhhhhhhhHH-
Q 011831 185 VLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQII-VLQGIVGSLPWTAM- 262 (476)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~- 262 (476)
.+...+.+.--.|.-.+++++ +...++.+...+.+..++...++ .+...+-...|...
T Consensus 210 aigmAvil~~W~ENygdps~~--------------------kdlltqf~gaa~aiaSD~ki~LLG~iqsLFE~smytFVF 269 (454)
T KOG4332|consen 210 AIGMAVILSSWSENYGDPSEN--------------------KDLLTQFKGAARAIASDEKIALLGAIQSLFEGSMYTFVF 269 (454)
T ss_pred HHHHHHHHhhhhhccCChhhh--------------------HHHHHHhhHhHHHHhcchHHHHHHHHHHHHhhhhheeee
Confidence 222222221111111111111 11112222233344455544433 33333333333333
Q ss_pred HHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcch
Q 011831 263 VFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSN 341 (476)
Q Consensus 263 ~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (476)
.|.|..-.+ .+.+ -|.+++.+.+...+|+-+..++..|-..|......+...+....+.++ +...........
T Consensus 270 LWTPaLspn~e~iP---hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lp---ilt~~vsP~kes 343 (454)
T KOG4332|consen 270 LWTPALSPNDEEIP---HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLP---ILTSSVSPSKES 343 (454)
T ss_pred eecccCCCCcccCC---chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHH---HHHhccCCCcCC
Confidence 345543321 2322 367777788888888877777776655543221111111111111111 111111111222
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhh
Q 011831 342 YYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEG 389 (476)
Q Consensus 342 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 389 (476)
...-.+.+..+-.+.|...| ...-+=.+..|.+.|++.+-++..--+
T Consensus 344 ~~~s~i~F~~~E~cvGlfwP-SimkmRsqyIPEearstimNfFRvPLn 390 (454)
T KOG4332|consen 344 PSESLIGFCLFEACVGLFWP-SIMKMRSQYIPEEARSTIMNFFRVPLN 390 (454)
T ss_pred chHHHHHHHHHHHHHhhcch-HHHHHHHhhCCHHHHhhhhhheechhh
Confidence 22233444455556666666 556666788898888877666544333
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.9e-08 Score=93.20 Aligned_cols=165 Identities=16% Similarity=0.146 Sum_probs=141.8
Q ss_pred HHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhh
Q 011831 23 AAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQH 102 (476)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~ 102 (476)
..++.+.....+...+=.-.||++..+.-.|........+-.+.-++.+++..|+|+-+++..++....+=.+..+..+|
T Consensus 379 ~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n 458 (618)
T KOG3762|consen 379 VAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQN 458 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcC
Confidence 33344444444444555667888888888887777778888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHH-hhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHH
Q 011831 103 FLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLS-LVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMA 181 (476)
Q Consensus 103 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~ 181 (476)
.|..+...+++|+..+..+.+..+|+++..||+.|..+.++.+ ...++|--+|.++++.+.+. ++=|..|.+.+
T Consensus 459 ~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~-----fg~~ttf~~~g 533 (618)
T KOG3762|consen 459 PWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER-----FGARTTFRIFG 533 (618)
T ss_pred chheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee-----ehhHHHHHHHH
Confidence 9999999999999999999999999999999999999999875 45789999999999999998 89999999999
Q ss_pred HHHHHHHHHhh
Q 011831 182 TLSVLIAFLVL 192 (476)
Q Consensus 182 ~~~~~~~~~~~ 192 (476)
+.+++..+...
T Consensus 534 iAcl~~l~~~~ 544 (618)
T KOG3762|consen 534 IACLVTLALFI 544 (618)
T ss_pred HHHHHHHHHHH
Confidence 88877665444
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.86 E-value=2e-08 Score=98.07 Aligned_cols=124 Identities=13% Similarity=0.099 Sum_probs=109.8
Q ss_pred HhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhh----------hhHHHHHHHHHH
Q 011831 43 EAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGAS----------QHFLHVGMWRAV 112 (476)
Q Consensus 43 ~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~r~l 112 (476)
+++|.++.+.|.+.....++..++....+++.+|++.|+++.++.++.+++.+..... ++.+.+...-++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 4689999999999999999999999999999999999999999999999888664321 333445566789
Q ss_pred HHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcc
Q 011831 113 NGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQ 166 (476)
Q Consensus 113 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~ 166 (476)
.+++.+....+...++.+..|+++++...++.+...++|..+++.+++.+.++.
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~ 414 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETI 414 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999873
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.2e-08 Score=95.75 Aligned_cols=116 Identities=13% Similarity=0.091 Sum_probs=93.1
Q ss_pred CchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHhhhhhhhhHHHHH
Q 011831 50 SDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGA--SQHFLHVGMWRAVNGFGLAIVIPALQSF 127 (476)
Q Consensus 50 ~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 127 (476)
+..+.+.....+...++.+++++++||+|+|+.+..+.++..+..+...+ .++.+.+++..++.|++.+...+...++
T Consensus 264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am 343 (444)
T PRK09669 264 DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSM 343 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566667788889999999999999999998888766654443333 3567778888899999999999999999
Q ss_pred HhhhcCC-------CcchhhHHHHHhhhhhhhhhHHHHHHHHhhc
Q 011831 128 IADSYKD-------GVRGAGFGLLSLVGTMGGIGGGVLATIMAGH 165 (476)
Q Consensus 128 i~~~~~~-------~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~ 165 (476)
++|..+. ++.|..++..+....+|..+|+.+++.+.+.
T Consensus 344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~ 388 (444)
T PRK09669 344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW 388 (444)
T ss_pred HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998852 3346678899999999999999999998876
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.7e-07 Score=82.81 Aligned_cols=167 Identities=14% Similarity=0.126 Sum_probs=134.0
Q ss_pred HHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhc-CCchhHHHHHHHHHHHHHHHHhhhhHH
Q 011831 26 MERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINY-DRPAVLTIGILCWAFSTAAVGASQHFL 104 (476)
Q Consensus 26 ~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~~~ 104 (476)
+.....++.-.-+|.+..|.|+|..+.|++.+...+.....++....+.+|. ++|+..+....++.++.+.+.+.+.-.
T Consensus 219 lqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~ 298 (395)
T COG2807 219 LQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQL 298 (395)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3444445556668999999999999999999999999999999999999964 667788888888888888887776544
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHhhhcCC-CcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHH
Q 011831 105 HVGMWRAVNGFGLAIVIPALQSFIADSYKD-GVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATL 183 (476)
Q Consensus 105 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~ 183 (476)
.++- -++.|+|.|...|.+...+.+..+. ++-++..+..+....+=...||.+.|++.+. ..+|+..+...+..
T Consensus 299 ~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa----~gsw~~~~~~l~~~ 373 (395)
T COG2807 299 PILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDA----TGSWSAPLVLLALA 373 (395)
T ss_pred HHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHh----cCChHHHHHHHHHH
Confidence 3333 4999999999999999999988743 5556666777777777778899999999986 37899999998888
Q ss_pred HHHHHHHhheeecc
Q 011831 184 SVLIAFLVLVFVVD 197 (476)
Q Consensus 184 ~~~~~~~~~~~~~~ 197 (476)
.++..+..+..-|+
T Consensus 374 ~i~m~i~Gl~a~r~ 387 (395)
T COG2807 374 TLLMLIFGLRAGRN 387 (395)
T ss_pred HHHHHHHHhhcchh
Confidence 88777777665443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.3e-08 Score=81.91 Aligned_cols=108 Identities=19% Similarity=0.243 Sum_probs=77.8
Q ss_pred HHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccc
Q 011831 285 LFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAAN 364 (476)
Q Consensus 285 ~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 364 (476)
...++..++.++.+++.||++||+.. ..+........... ...++ ........++.|++.+...+ ..
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~-------~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~g~~~~~~~~-~~ 72 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVL-------LVGLFIFVLSTAMF----ALSSN-ITVLIIARFLQGFGAAFALV-AG 72 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHH-------HHHHHHHHHHHHHH----HHhcc-HHHHHHHHHHHHHHHHHHHH-hH
Confidence 45677888999999999999998732 11111111111111 11122 23345667778888777776 67
Q ss_pred cchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhh
Q 011831 365 GPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEK 405 (476)
Q Consensus 365 ~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 405 (476)
..+..|..|+++|+++.++.+...+++..++|.+.+.+.+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 113 (141)
T TIGR00880 73 AALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF 113 (141)
T ss_pred HHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc
Confidence 88999999999999999999999999999999999999876
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.8e-08 Score=69.15 Aligned_cols=81 Identities=17% Similarity=0.095 Sum_probs=75.1
Q ss_pred HHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHH
Q 011831 27 ERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHV 106 (476)
Q Consensus 27 ~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l 106 (476)
.+..+..+.|.+|.+++|.++|.++.|++.+..++||.++++...++.++..+++.+..+.+...+..+.+++.++.+.+
T Consensus 4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 45677889999999999999999999999999999999999999999999888999999999999999999999887765
Q ss_pred H
Q 011831 107 G 107 (476)
Q Consensus 107 ~ 107 (476)
.
T Consensus 84 ~ 84 (85)
T PF06779_consen 84 S 84 (85)
T ss_pred h
Confidence 3
|
Note that many members are hypothetical proteins. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.8e-08 Score=88.36 Aligned_cols=161 Identities=13% Similarity=0.148 Sum_probs=129.8
Q ss_pred HhccchhhHHH-HHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcC--CchhHHHHHHHHHHHHHHHHhhhhHHHH
Q 011831 30 DENLLPSVYKE-VSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYD--RPAVLTIGILCWAFSTAAVGASQHFLHV 106 (476)
Q Consensus 30 ~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G--rr~~~~~~~~~~~~~~~~~~~~~~~~~l 106 (476)
.....-|.++. +.|.+..+..++|+..--..+.+.++..+.|.++||++ |-.....++++.++.+....+++++.++
T Consensus 285 ~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L 364 (464)
T KOG3764|consen 285 SLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQL 364 (464)
T ss_pred hHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHH
Confidence 33344455554 66777866669999988889999999999999999999 4335566677777777788889999999
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHhhhcCCC------cchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHH
Q 011831 107 GMWRAVNGFGLAIVIPALQSFIADSYKDG------VRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILM 180 (476)
Q Consensus 107 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~ 180 (476)
.+-++..|++.+..............+.+ -.|...++...++.+|..+||.+++.+.+. .|++|.-.+.
T Consensus 365 ~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~-----iGF~wl~~ii 439 (464)
T KOG3764|consen 365 WVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEA-----IGFEWLMTII 439 (464)
T ss_pred hhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheee-----hhHHHHHHHH
Confidence 99999999988877776666666665443 357889999999999999999999999998 9999999999
Q ss_pred HHHHHHHHHHhheee
Q 011831 181 ATLSVLIAFLVLVFV 195 (476)
Q Consensus 181 ~~~~~~~~~~~~~~~ 195 (476)
++..++.+.+...+.
T Consensus 440 g~~n~iyapvl~ll~ 454 (464)
T KOG3764|consen 440 GILNLIYAPVLLLLR 454 (464)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988877665543
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.9e-07 Score=89.93 Aligned_cols=127 Identities=22% Similarity=0.322 Sum_probs=99.4
Q ss_pred hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHH
Q 011831 272 IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVL 351 (476)
Q Consensus 272 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (476)
+.+++.+-+++.+....+.+++.+..|++.||+|.|+.. ..+.++......+.-... ..+ ...+++.=++
T Consensus 68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~-------~~~~~~sa~~t~l~P~aa--~~~-~~~~~~~R~l 137 (466)
T KOG2532|consen 68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVF-------FISGLISALLTLLTPLAA--SIG-FYLLLVLRFL 137 (466)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHH-------HHHHHHHHHHHHHHHHHH--Hhc-chhhHHHHHH
Confidence 788999999999999999999999999999999999742 222222221111111111 111 1245677789
Q ss_pred HHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhhcC
Q 011831 352 MGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGY 409 (476)
Q Consensus 352 ~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~ 409 (476)
.|++.+...+ ....+..+-.|+++|++..++.....++|..++-++.|.+.+...||
T Consensus 138 qGl~~g~~~p-a~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW 194 (466)
T KOG2532|consen 138 QGLGQGVLFP-AIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGW 194 (466)
T ss_pred hHHHHhHHHh-hhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCC
Confidence 9999999998 88899999999999999999999999999999999999999986666
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.6e-07 Score=81.62 Aligned_cols=133 Identities=14% Similarity=0.109 Sum_probs=104.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchH
Q 011831 263 VFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNY 342 (476)
Q Consensus 263 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (476)
...|.+.+.++++..+++++......+..+.++..+++.+|+|.|+. .+.++.+....+. ++........+
T Consensus 34 iLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~g-------i~lgL~l~avg~~--lF~pAa~~~~y 104 (422)
T COG0738 34 ILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAG-------IVLGLLLYAVGAA--LFWPAASSKSY 104 (422)
T ss_pred hhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHH-------HHHHHHHHHHHHH--HHhhhhhhhhH
Confidence 34666666699999999999999999999999999999999999973 2222222222111 11111223346
Q ss_pred HHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhh
Q 011831 343 YTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEK 405 (476)
Q Consensus 343 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 405 (476)
..+.+.+++.|.|.+...+ ..++++..+.|++....-+.+.+.+..+|..++|.+++.+..+
T Consensus 105 ~~FL~~lFila~Gi~~Let-aaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils 166 (422)
T COG0738 105 GFFLVALFILASGIGLLET-AANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS 166 (422)
T ss_pred HHHHHHHHHHHhhhHHHHh-ccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 6677888999999999888 8899999999988899999999999999999999999999986
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-07 Score=88.94 Aligned_cols=179 Identities=15% Similarity=0.164 Sum_probs=117.8
Q ss_pred hhHHHHHHHHHhhhh-hhhHHHHHHHHHHH-hC----CChhHHHHHHHHHHhhhhhhhchhhhhhhhh-ccccCCCcchh
Q 011831 243 PTFQIIVLQGIVGSL-PWTAMVFFTMWFEL-IG----FDHSSTAALLSLFAIGCAVGSFLGGVVADRI-SQAYPHSGRVM 315 (476)
Q Consensus 243 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~g----~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~~~~~~~ 315 (476)
|.++.+...-+.--+ .|+.-..+..|+.. .+ +|++++.-++..+...--+..+++||++||+ |+|+..
T Consensus 21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI----- 95 (498)
T COG3104 21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI----- 95 (498)
T ss_pred chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH-----
Confidence 344444444444433 44444556666643 44 9999998888888777778889999999997 777742
Q ss_pred HhHHHHHhhhhHHHhhhhccccCc-chHHHHHHHHHHHHHHHHhhhcccccchhhcccCccc--hhhHHHHHHhhhhhhh
Q 011831 316 CAQFSAFMGIPFSWFLLTAIPQSV-SNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKH--RTMIYAFDRAFEGSFS 392 (476)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~--~g~~~g~~~~~~~~~~ 392 (476)
.++.....+....+.... .....+.+.+.++++|.|..=+ ...+++.|.+|+++ |-.+.++.....|+|+
T Consensus 96 ------~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~-NiS~llg~ly~~~DprrD~gFt~fY~~iNiGs 168 (498)
T COG3104 96 ------VLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKP-NISSLLGELYPKDDPRRDGGFTLFYMGINIGS 168 (498)
T ss_pred ------HHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccc-cHHHHHHHhcCCCCcccCCCccEEEEEeehHH
Confidence 222222222222222221 1123355666677788887777 77899999997553 6778899999999999
Q ss_pred hhhhHHHHHHHhhhhcCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 011831 393 SFAAPLVGILSEKMFGYDSKAIDPVMGSPREALALSRGLLSMMAVPFGLCCLFYTPLYKIF 453 (476)
Q Consensus 393 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (476)
.++|.+.+++.++. +| ...+...++....+.+.+...+++.
T Consensus 169 l~~p~i~~~~~~~~-g~-------------------~~gF~~aavGm~~gl~~f~~~~r~~ 209 (498)
T COG3104 169 LIAPIITGLLAINY-GW-------------------HVGFGLAAVGMIIGLVIFLLGRRHV 209 (498)
T ss_pred HHHHHHHHHHHHhh-CH-------------------HHHHHHHHHHHHHHHHHHHHccchh
Confidence 99999999999995 34 5556666665666666666555443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.2e-07 Score=88.01 Aligned_cols=125 Identities=15% Similarity=0.148 Sum_probs=80.3
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHH
Q 011831 265 FTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYT 344 (476)
Q Consensus 265 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (476)
++...++.|-+ ....++.....++..+..++.|+++|.+|||.. .+.+.++.. +........+ ....
T Consensus 67 l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~-------~i~g~~l~v----vG~Iv~atA~-~~~~ 133 (599)
T PF06609_consen 67 LPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYF-------FIIGSLLGV----VGSIVCATAQ-NMNT 133 (599)
T ss_pred HHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHH-------HHHHHHHHH----hHHHHhhcCC-cHHH
Confidence 45555678876 445566677888899999999999999999973 222222222 2222222222 2445
Q ss_pred HHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHh
Q 011831 345 YAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSE 404 (476)
Q Consensus 345 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 404 (476)
++....+.|++.+.... ....++|..|.+.|..+.++.....-.....+|.+...+..
T Consensus 134 ~iag~~l~GvgaG~~~~--~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~ 191 (599)
T PF06609_consen 134 FIAGMVLYGVGAGVQEL--AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA 191 (599)
T ss_pred HHHHHHHHHHhhHHHHH--HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc
Confidence 66778888887665554 45668999999999888776665433333356666555543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.7e-05 Score=75.31 Aligned_cols=176 Identities=18% Similarity=0.140 Sum_probs=134.2
Q ss_pred chHHHHHHHHHHHHHHHHHh-ccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhc-CCchhHHHHHHH
Q 011831 12 GISLSLILINLAAIMERADE-NLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINY-DRPAVLTIGILC 89 (476)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~~~~~~~~ 89 (476)
..|+....+........... ......+..+.+++|.+.....-..+.+.-......+.++.++|-| ||-+++.++.++
T Consensus 34 g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i 113 (571)
T KOG1237|consen 34 GGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLI 113 (571)
T ss_pred chhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34555554444444554444 3446777888999998887777788888888889999999999965 888899999999
Q ss_pred HHHHHHHHHhhhhH-------------------------HHHHHHHHHHHhhhhhhhhHHHHHHhhhcC---CC---cch
Q 011831 90 WAFSTAAVGASQHF-------------------------LHVGMWRAVNGFGLAIVIPALQSFIADSYK---DG---VRG 138 (476)
Q Consensus 90 ~~~~~~~~~~~~~~-------------------------~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~---~r~ 138 (476)
..++..+..++... ..++...-+..+|.|+.-|...+.-+|-++ ++ .+.
T Consensus 114 ~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~ 193 (571)
T KOG1237|consen 114 SLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIP 193 (571)
T ss_pred HHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcc
Confidence 99887665553222 245666778888999999999999999997 32 234
Q ss_pred hhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhh
Q 011831 139 AGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVL 192 (476)
Q Consensus 139 ~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~ 192 (476)
..+.++....++|..++..+..+.-+. .+|.+.|.+..+...+..++.+
T Consensus 194 ~fFnW~yf~~~~g~l~a~t~~vyiq~~-----~~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 194 SFFNWFYFSQNGGALLAQTVLVYIQDN-----VGWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhhhc-----ccceeeccHHHHHHHHHHHHHH
Confidence 778899999999999999999888766 8999999998887665555444
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-06 Score=85.06 Aligned_cols=140 Identities=14% Similarity=-0.005 Sum_probs=93.9
Q ss_pred HHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhh--hH
Q 011831 26 MERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQ--HF 103 (476)
Q Consensus 26 ~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~ 103 (476)
+........+.....+.+...-++...+.+.+.+.++..++.+++++++||+|+|+++..+..+..+..++..+.+ +.
T Consensus 239 ~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (460)
T PRK11462 239 FNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQAS 318 (460)
T ss_pred HHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHH
Confidence 3333333333444444444433444556777888888999999999999999999987765555444444433322 23
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHhhhcC-------CCcchhhHHHHHhhhhhhhhhHHHHHHHHhhc
Q 011831 104 LHVGMWRAVNGFGLAIVIPALQSFIADSYK-------DGVRGAGFGLLSLVGTMGGIGGGVLATIMAGH 165 (476)
Q Consensus 104 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~ 165 (476)
..+++.-++.|++.+...+...++++|..+ +++.|..++.......+|..+++.+++.+.+.
T Consensus 319 ~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~ 387 (460)
T PRK11462 319 ITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAY 387 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445567788877777777788888775 33345556777888999999999999988865
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.4e-06 Score=67.27 Aligned_cols=110 Identities=17% Similarity=0.136 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcC
Q 011831 54 YLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYK 133 (476)
Q Consensus 54 ~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 133 (476)
.-.++.+....+.+++.+.+.+++|.|+.++++.+.+.+-.... +-++.+.++.+-.+.|++.+..+++...++.+..+
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~ 119 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYST 119 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence 34466677778888999999999999999999999988655544 56778889999999999999999999999999999
Q ss_pred CCcchhhHHHHHhhhhhhhhhHHHHHHHHhh
Q 011831 134 DGVRGAGFGLLSLVGTMGGIGGGVLATIMAG 164 (476)
Q Consensus 134 ~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~ 164 (476)
+++|++-.+++......+.++|.++...+.+
T Consensus 120 ~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 120 EETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999888777654
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.5e-06 Score=75.90 Aligned_cols=138 Identities=18% Similarity=0.219 Sum_probs=89.7
Q ss_pred hhhHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhcccc
Q 011831 258 PWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQ 337 (476)
Q Consensus 258 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (476)
.|..-.|.|..-+++|+|..+...+.....++..+| +..|.+.||+|.+. ...++.................
T Consensus 18 ~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~-------~l~iG~~~~~~GY~~~~l~~~~ 89 (250)
T PF06813_consen 18 TYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWV-------VLLIGAVLGFVGYGLLWLAVSG 89 (250)
T ss_pred ccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHH-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 344445667666669999999999998888888775 88899999999874 2233333333332222222222
Q ss_pred C--cchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhh
Q 011831 338 S--VSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEK 405 (476)
Q Consensus 338 ~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 405 (476)
. ....+.+.+..++.|.+.++..+ .......+.+| ++||++.|+.-....+++++-..+...+.+.
T Consensus 90 ~i~~~~~~~~~~~~~l~~~s~~~~~t-a~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 90 RIPSLPVWLMCLFLFLGGNSSCWFNT-ASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred ccCccchHHHHHHHHHHcccHHHhhh-HHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 1 12344455555566666655555 33444456788 6899999999999998888766665555544
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-05 Score=74.05 Aligned_cols=160 Identities=17% Similarity=0.069 Sum_probs=132.4
Q ss_pred chhhH-HHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhh-hcCCchhHHHHHHHHHHHHHHHHhh---hhHHHHHH
Q 011831 34 LPSVY-KEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVI-NYDRPAVLTIGILCWAFSTAAVGAS---QHFLHVGM 108 (476)
Q Consensus 34 ~~~~~-~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~d-r~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~l~~ 108 (476)
--.++ |+=.|-||.+..|...+...+..+..++....|++.. |.++|+.-.+++....++..+..++ .+.+.+..
T Consensus 227 QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~ 306 (403)
T PF03209_consen 227 QDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRP 306 (403)
T ss_pred hHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 33444 3334558999999999999999999999999999888 6788888888888888887765554 57888999
Q ss_pred HHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhccc-----CCCCchhHHHHHHHHH
Q 011831 109 WRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQF-----WGVPGWRCAFILMATL 183 (476)
Q Consensus 109 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~-----~~~~~wr~~f~i~~~~ 183 (476)
.-++.|++.|.+.....+.+.|..++++.|..+|.+.+...++..++..+++.+.+... ....+|-.+|.+.++.
T Consensus 307 ~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~l 386 (403)
T PF03209_consen 307 GVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVL 386 (403)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999886521 2446788999998887
Q ss_pred HHHHHHHhhe
Q 011831 184 SVLIAFLVLV 193 (476)
Q Consensus 184 ~~~~~~~~~~ 193 (476)
.++..++...
T Consensus 387 l~~a~~ll~~ 396 (403)
T PF03209_consen 387 LLAALVLLGR 396 (403)
T ss_pred HHHHHHHHHH
Confidence 6665555443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.7e-07 Score=85.16 Aligned_cols=185 Identities=14% Similarity=0.056 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhH-----HH---HH-HHHHHHhhhhhhhHhhhhcCCchhHHH
Q 011831 15 LSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGY-----LT---FI-RNFVQGLSSPLAGVLVINYDRPAVLTI 85 (476)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~-----~~---s~-~~l~~~~~~~~~G~l~dr~Grr~~~~~ 85 (476)
+.+...+...|+.....+..+.....+.+.+++.+.+... .. .+ ...++..+-.+...++|++|||++.+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 5667778888888888888888889999988887665444 11 11 122333466677889999999999999
Q ss_pred HHHHHHHHHHHHHhhhhH----HHHHHHHHHHHhh-hhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHH
Q 011831 86 GILCWAFSTAAVGASQHF----LHVGMWRAVNGFG-LAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLAT 160 (476)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~----~~l~~~r~l~G~~-~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~ 160 (476)
+.+++++..+..++..|. ..+.+.-.+..+. .-+.......+-+|.+|.+-|+...|+..+..-.|.++|...-.
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~ 463 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL 463 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence 999999999999987661 1223333333332 11122333456789999999999999999999999999999999
Q ss_pred HHhhcccCCCCchhHHHHHHHHHHHHHHHHhheeeccCCC
Q 011831 161 IMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRK 200 (476)
Q Consensus 161 ~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~ 200 (476)
++.++......+.|+++++.+..+++..+..++++ |++.
T Consensus 464 ~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~p-Etk~ 502 (538)
T KOG0252|consen 464 YLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIP-ETKG 502 (538)
T ss_pred HhhhccCCccccchHHHHHHHHHHHHhHheeEEee-cccc
Confidence 99884333347899999999998877777766666 5443
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.3e-06 Score=76.11 Aligned_cols=314 Identities=11% Similarity=0.034 Sum_probs=192.5
Q ss_pred HHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhh
Q 011831 61 FVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAG 140 (476)
Q Consensus 61 l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 140 (476)
-.+.+.-.+.=.+.|..--|++++.-.+.......+.-+.++.+.+=+.-+..|...+ ...+-++++-+..+|+++.++
T Consensus 53 YSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~~Yqrv 131 (433)
T KOG3810|consen 53 YSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPEMYKRV 131 (433)
T ss_pred HHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHhhhheeeeecCHHHHHHH
Confidence 3444555566678999999999988888888888888899999999888999998865 446678899899999999999
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhh
Q 011831 141 FGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEK 220 (476)
Q Consensus 141 ~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (476)
.+...+..-.|-.+|..++..+... ...+++..-.+......+..++.+++++.++..--+.++++. ...+.++.
T Consensus 132 t~y~RaA~L~g~~~g~vlaQlLvs~---~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~--~v~~~e~~ 206 (433)
T KOG3810|consen 132 TGYCRAAFLVGKFVGSVLAQLLVSL---ETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKI--SVGDLEEM 206 (433)
T ss_pred HHHhHHHHHHHhHHHhHHHHHHhhh---cccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccc--eeccchhc
Confidence 9999999999999999999998875 224555555555444444444444444333222111111111 11111111
Q ss_pred cCCc-----cchhHHHHHHhhhhhccchhHHHHHHHHHhhhhhhhHH-HHHHHHHHHhC--CChhHHHHHHHHHHhhhhh
Q 011831 221 GNTS-----VSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAM-VFFTMWFELIG--FDHSSTAALLSLFAIGCAV 292 (476)
Q Consensus 221 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g--~s~~~~g~~~~~~~~~~~~ 292 (476)
+... .+......++++....++|......+...+..+.+... +|....-++.. -...-.|..=++..+.+++
T Consensus 207 ~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~ 286 (433)
T KOG3810|consen 207 NPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAI 286 (433)
T ss_pred CccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHH
Confidence 1111 11223344556667778888877777777666655444 45444444432 1112234455566777788
Q ss_pred hhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhccc
Q 011831 293 GSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVV 372 (476)
Q Consensus 293 ~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 372 (476)
+.+..|.+--++.|... ..+...+.. -. -+.+.+....+.|+ ..+...++........+ +...-+++..
T Consensus 287 ~~~~~g~l~i~w~r~g~----~ll~~~s~~----~a-gllf~m~~t~~Iw~-~Ya~yvlfr~~y~l~it-iA~~~iA~nL 355 (433)
T KOG3810|consen 287 AALAAGYLNINWNRWGD----LLLAVGSAV----QA-GLLFIMAQTQHIWV-CYAGYVLFRVIYQLTIT-IATFQIARNL 355 (433)
T ss_pred HHHHHHheeeccchhhH----HHHHHHHHH----hh-hhhhhhhcccceeh-hhhhHHHHHhhHhhhhh-HHHHHHHHhh
Confidence 88888888665555432 122222111 11 22223344444444 44556666666665555 5555666667
Q ss_pred CccchhhHHHHHHhhhhhh
Q 011831 373 PAKHRTMIYAFDRAFEGSF 391 (476)
Q Consensus 373 p~~~~g~~~g~~~~~~~~~ 391 (476)
..+.-|...|+...+.-+.
T Consensus 356 ~~e~~gLvFGiNTFvAl~l 374 (433)
T KOG3810|consen 356 SSELFGLVFGINTFVALIL 374 (433)
T ss_pred hhhhheeeeehHHHHHHHH
Confidence 7788888898887654433
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.2e-06 Score=87.51 Aligned_cols=120 Identities=21% Similarity=0.196 Sum_probs=93.9
Q ss_pred hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHH
Q 011831 272 IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVL 351 (476)
Q Consensus 272 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (476)
...+.....+..++..++..+|.++.|.++||+|||+. ...+.++..++. ......++ +..+.+.=++
T Consensus 113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~-------~~~~~~~~~i~~----~~~a~a~~-~~~~~~~Rfl 180 (521)
T KOG0255|consen 113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPV-------LLVSLLLFIIFG----ILTAFAPN-YWMFLIFRFL 180 (521)
T ss_pred eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHH-------HHHHHHHHHHHH----HHHHHhCc-HHHHHHHHHH
Confidence 56677788888899999999999999999999999973 222222222222 12222333 5567788889
Q ss_pred HHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhh
Q 011831 352 MGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEK 405 (476)
Q Consensus 352 ~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 405 (476)
.|++.+.... ....+..|.+++++|+.+..+ ......++.+++...+++...
T Consensus 181 ~G~~~~~~~~-~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~ 232 (521)
T KOG0255|consen 181 SGFFGSGPLT-VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRD 232 (521)
T ss_pred HHhhccchhH-HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 9999888888 889999999999999999999 888888999999999998874
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2e-05 Score=78.39 Aligned_cols=181 Identities=14% Similarity=0.073 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHH
Q 011831 16 SLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTA 95 (476)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~ 95 (476)
.+..+.+..+.............+.+-+..+.+... .+..........++..++..+.||+|||+.++.+...+.++.+
T Consensus 296 ~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~ 374 (513)
T KOG0254|consen 296 LIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLV 374 (513)
T ss_pred HHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHH
Confidence 333444444444455555666678888888876544 5555666667777888889999999999999999999999999
Q ss_pred HHHhhhhH-------------HHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHH
Q 011831 96 AVGASQHF-------------LHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIM 162 (476)
Q Consensus 96 ~~~~~~~~-------------~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l 162 (476)
+.+..... ..+...-+.......+..+....+.+|.+|.+-|+++.++......+...+-......+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~ 454 (513)
T KOG0254|consen 375 ILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFI 454 (513)
T ss_pred HHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88865322 11222222333333344456667889999999999999988877776665544444344
Q ss_pred hhcccCCCCchhHHHHHHHHHHHHHHH-HhheeeccCCCCC
Q 011831 163 AGHQFWGVPGWRCAFILMATLSVLIAF-LVLVFVVDPRKKA 202 (476)
Q Consensus 163 ~~~~~~~~~~wr~~f~i~~~~~~~~~~-~~~~~~~~~~~~~ 202 (476)
.+. .++...|...+..+.+... ..+++.||++...
T Consensus 455 ~~~-----~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~s 490 (513)
T KOG0254|consen 455 TEA-----LGIGGTFGYFGGICLLSLIIFVFFFVPETKGLT 490 (513)
T ss_pred HHh-----ccccchHHHHHHHHHHHHHHHheEEcccCCCCc
Confidence 333 2356677777777766666 6777888776544
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.4e-05 Score=75.78 Aligned_cols=142 Identities=18% Similarity=0.209 Sum_probs=100.3
Q ss_pred HHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhcccc-C-c
Q 011831 263 VFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQ-S-V 339 (476)
Q Consensus 263 ~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~ 339 (476)
.|+..|+.+ .|+++..+|.++.+.=+..++.-++.|.++||..+|+-. .|-++.......++. . .+.+..+. + .
T Consensus 33 ~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~Gr-fRP~lL~g~ip~~i~-~-~l~F~~p~~~~~ 109 (467)
T COG2211 33 LYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGR-FRPWLLWGAIPFAIV-A-VLLFITPDFSMT 109 (467)
T ss_pred HHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeeccccccccc-ccHHHHHHhHHHHHH-H-HHHHcCCCcccC
Confidence 678888877 999999999999999999999999999999976533321 112222222222222 2 22222221 1 2
Q ss_pred chHHHHHHHHHHHHHHHHhhhcccccchhhccc-CccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhhc
Q 011831 340 SNYYTYAVTLVLMGLTISWNATAANGPMFAEVV-PAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFG 408 (476)
Q Consensus 340 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~ 408 (476)
..+....+...+.++++..... ...++.+|.. .+++|.+..+.-....++|..+...+.+.+.+..++
T Consensus 110 ~k~~ya~vtY~l~~l~YT~vni-Py~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~ 178 (467)
T COG2211 110 GKLIYALVTYMLLGLGYTLVNI-PYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGG 178 (467)
T ss_pred cchHHHHHHHHHHHHHHHheeC-chhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344455667778888888777 5677788876 467899999999999999999999999999888654
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.1e-06 Score=60.08 Aligned_cols=70 Identities=23% Similarity=0.296 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHH
Q 011831 21 NLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCW 90 (476)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~ 90 (476)
-..++......+..-|.+|...++.|.|+.|+|.+.++..+...++++++|.++||+++++.++......
T Consensus 6 k~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 6 KAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 3445666666677888889999999999999999999999999999999999999999999777665543
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.4e-06 Score=80.12 Aligned_cols=151 Identities=12% Similarity=0.096 Sum_probs=99.4
Q ss_pred HHHHHHHHHhhhhhhhHH-HHHHHHHHH--hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhcc-ccCCCcchhHhHHH
Q 011831 245 FQIIVLQGIVGSLPWTAM-VFFTMWFEL--IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQ-AYPHSGRVMCAQFS 320 (476)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~-~~~~~~~~~~~~~~ 320 (476)
.+...+..+.....++.. .-.-.|+++ .+-+....|+..+...++..+++++.|+...|.+. |++. +.+
T Consensus 36 i~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pl-------i~s 108 (488)
T KOG2325|consen 36 IYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPL-------IVS 108 (488)
T ss_pred HHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCH-------HHH
Confidence 444555555555544444 234456666 77888888999999999999999999999999885 4442 122
Q ss_pred HHhhhhHHHhhhhccccCcc-hHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHH
Q 011831 321 AFMGIPFSWFLLTAIPQSVS-NYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLV 399 (476)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~ 399 (476)
.++... +-+.+......++ .-+.+.+.-++.|++.+.... .-.++++..-.++|.++++......-++..+||.+.
T Consensus 109 ~ii~~~-g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~--lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q 185 (488)
T KOG2325|consen 109 FLIAII-GNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAV--LRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQ 185 (488)
T ss_pred HHHHHH-HHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHH--HHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHH
Confidence 222222 2223322222222 445566777888888665544 688888877778899999998887778888888876
Q ss_pred HHHHhh
Q 011831 400 GILSEK 405 (476)
Q Consensus 400 g~l~~~ 405 (476)
..+...
T Consensus 186 ~~f~~L 191 (488)
T KOG2325|consen 186 LAFTPL 191 (488)
T ss_pred HHHhhh
Confidence 555443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=3e-06 Score=82.10 Aligned_cols=123 Identities=15% Similarity=0.126 Sum_probs=93.2
Q ss_pred HHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHH
Q 011831 270 ELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTL 349 (476)
Q Consensus 270 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (476)
++.++...+.+.+.+++.++.+++.+.++.+.||++-.+- +.. ..++...+..+... .++...+++.-
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~------l~~-~~~~w~~~~~~~~~-----~~s~~~~ialr 141 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKG------LSV-SGILWGLFGFLTAA-----VHSFPGLIALR 141 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHH------HHH-HHHHHHHHHHHHHH-----HhhhHHHHHHH
Confidence 3467778889999999999999999999999999984431 111 11111111111111 22345577888
Q ss_pred HHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhh
Q 011831 350 VLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEK 405 (476)
Q Consensus 350 ~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 405 (476)
++.|+..+...| ....++...+.+++|+..+|+.++..++|+.+|+.+...+...
T Consensus 142 ~llGl~es~~wP-~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~ 196 (495)
T KOG2533|consen 142 FLLGLFESGGWP-GVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKL 196 (495)
T ss_pred HHHHHHhcccch-HHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhh
Confidence 999999999998 7888999999999999999999999999999999998887653
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0047 Score=60.04 Aligned_cols=280 Identities=14% Similarity=0.108 Sum_probs=155.3
Q ss_pred hHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcC---CCCCchhHHHHHHHH-HHHhhhhhhhHhhhhcCCchhHHHHHH
Q 011831 13 ISLSLILINLAAIMERADENLLPSVYKEVSEAFN---AGPSDLGYLTFIRNF-VQGLSSPLAGVLVINYDRPAVLTIGIL 88 (476)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~s~~~~g~~~s~~~l-~~~~~~~~~G~l~dr~Grr~~~~~~~~ 88 (476)
.+..+..+.+..++..++.+. +.+++|.+= .+++.+.++-....+ ...+...+..+++||++|.+++-+...
T Consensus 22 E~~k~~~l~~m~f~i~f~y~~----lR~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~ 97 (491)
T PF03219_consen 22 ELKKFLPLALMFFFILFNYTI----LRDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIII 97 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 445555666666666555333 344555442 244455555554444 345667889999999999999888887
Q ss_pred HHHHHHHHHHhh--h-----------------------------hHHHHHHHHHHHHhhhhhhhh-HHHHHHhhhcCCCc
Q 011831 89 CWAFSTAAVGAS--Q-----------------------------HFLHVGMWRAVNGFGLAIVIP-ALQSFIADSYKDGV 136 (476)
Q Consensus 89 ~~~~~~~~~~~~--~-----------------------------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~ 136 (476)
.+.....++++. | +.|.+.+.-++.-+-.....+ .-..+..|.++.+|
T Consensus 98 ~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~e 177 (491)
T PF03219_consen 98 PFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEE 177 (491)
T ss_pred HHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 777777776663 1 111222222233332223333 45788999999999
Q ss_pred chhhHHHHHhhhhhhhhhHHHHHHHHhh-cc---cCCCCchhHHHHHHH----HHHHHHHHHhheeeccCCCCCCCccCC
Q 011831 137 RGAGFGLLSLVGTMGGIGGGVLATIMAG-HQ---FWGVPGWRCAFILMA----TLSVLIAFLVLVFVVDPRKKASTFHGT 208 (476)
Q Consensus 137 r~~~~~~~~~~~~lG~~~g~~~~~~l~~-~~---~~~~~~wr~~f~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (476)
-.|..+++..+.++|.++++.+...+.+ .. ..+...|...+.... +.+++...+...+-+....++...
T Consensus 178 AKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~--- 254 (491)
T PF03219_consen 178 AKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFY--- 254 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccc---
Confidence 9999999999999999999999999888 11 112345664443222 222222222222211111100000
Q ss_pred CCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhhhhhHH-HHHHHHHHHhCCChhH----HHHHH
Q 011831 209 GENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAM-VFFTMWFELIGFDHSS----TAALL 283 (476)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~----~g~~~ 283 (476)
++...+++ +.......+..+.++++|....+.+..+......... .-.-..+++.--++.+ .|...
T Consensus 255 ------~~~~~~kk---~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~ 325 (491)
T PF03219_consen 255 ------PSAKKKKK---KKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFS 325 (491)
T ss_pred ------hhhhcccc---cCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 00000001 1111234456677888888887777666655544444 2122223332122222 24445
Q ss_pred HHHHhhhhhhhchhhhhhhhhcccc
Q 011831 284 SLFAIGCAVGSFLGGVVADRISQAY 308 (476)
Q Consensus 284 ~~~~~~~~~~~~~~g~l~dr~~~~~ 308 (476)
...++..++..++++.+.+|+|-+.
T Consensus 326 ~~tGivtii~~~l~~~iir~~GW~~ 350 (491)
T PF03219_consen 326 SWTGIVTIIMMFLSSNIIRRFGWRT 350 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 5566666777788888889888775
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.5e-08 Score=99.18 Aligned_cols=163 Identities=22% Similarity=0.256 Sum_probs=111.5
Q ss_pred cchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHH--h---hhh-----
Q 011831 33 LLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVG--A---SQH----- 102 (476)
Q Consensus 33 ~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~--~---~~~----- 102 (476)
......+.+.++.+.+.. -.......+...++.++...+.||+|||++++.+..+.+++.+..+ . .++
T Consensus 271 ~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (451)
T PF00083_consen 271 FIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWS 348 (451)
T ss_pred cccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 334445677777777666 1222233344556777777999999999999999999888888775 1 111
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHH
Q 011831 103 FLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMAT 182 (476)
Q Consensus 103 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~ 182 (476)
...+.......-....+..+....+.+|.+|.+.|.++.++......++..+++.+...+.+. .+-...+.+.++
T Consensus 349 ~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~-----~~~~~~~~i~~~ 423 (451)
T PF00083_consen 349 ILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNN-----LGGWGVFLIFAG 423 (451)
T ss_pred cccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccc-----ccccccchhhHH
Confidence 122222211111122234466668889999999999999999999999999999888777765 342455666677
Q ss_pred HHHHHHHHhheeeccCCCCC
Q 011831 183 LSVLIAFLVLVFVVDPRKKA 202 (476)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~ 202 (476)
.+++..+..+++.||++.+.
T Consensus 424 ~~~i~~i~~~~~lpET~g~~ 443 (451)
T PF00083_consen 424 VCLIAIIFVYFFLPETKGKT 443 (451)
T ss_pred HHHHHHhheeEEEeeCCCCC
Confidence 77777888888888877654
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00023 Score=65.93 Aligned_cols=363 Identities=11% Similarity=0.022 Sum_probs=157.4
Q ss_pred hHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHH
Q 011831 13 ISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAF 92 (476)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~ 92 (476)
+.......++..+-......++....+++.+++..++. .--....+.+...+...+...+--+...|.-..++..+...
T Consensus 16 ~~~v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~ 94 (406)
T KOG1479|consen 16 YNLVYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLI 94 (406)
T ss_pred cccHHHHHHHHhcccccchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555666677777888888754443 33344444444444444444444444333322222222222
Q ss_pred HH---HHHHhh---------hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHH
Q 011831 93 ST---AAVGAS---------QHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLAT 160 (476)
Q Consensus 93 ~~---~~~~~~---------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~ 160 (476)
.. ..+.++ ..++..++.-.+.+.+.|..........++. |+|.-.. +..+.++++.+..++--
T Consensus 95 ~il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~ytqa----vm~G~a~aG~l~Sl~~i 169 (406)
T KOG1479|consen 95 AILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEYTQA----VMSGQALAGTLTSLLRI 169 (406)
T ss_pred HHHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHHHHH----HHhcchhHhHHHHHHHH
Confidence 22 222222 2455566777888888887777777766664 4543322 23344444333332221
Q ss_pred HHhhcccCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCC---CCChhhHhhhcCCccchhHHHHHHhhh
Q 011831 161 IMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGE---NFDRDELVEKGNTSVSSVWLESWMATK 237 (476)
Q Consensus 161 ~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (476)
...........+ -..|++.+.+.++..++.+...++.+..+..++++++ +.+.++.+.+.+.+ ... .+.+
T Consensus 170 ~tka~~~~~~~s-A~~yF~~s~~~~llC~i~y~~l~~lpf~~yy~~~~~~~~~~l~~~~~~~~~~~~-~~~-----~~~~ 242 (406)
T KOG1479|consen 170 LTKAAFSDSRTS-ALIYFITSTVILLLCFVLYLVLPKLPFVRYYREKAGSIGSKLAAEGIESDSSLS-NED-----DSLW 242 (406)
T ss_pred HHHHhcCCCCce-eehhHHHHHHHHHHHHHHHHHhhcchHHHHHhhhcccccccccccccccccccc-ccc-----chHH
Confidence 111111111122 2234444444344444444444433221111111111 00111110000000 000 0122
Q ss_pred hhccchhHHHHHHHHHhhhhhhhHH-HHHHHHHHH-h---CCChhHHHHHHHH-HHhhhhhhhchhhhhhhhhccccCCC
Q 011831 238 AVIKVPTFQIIVLQGIVGSLPWTAM-VFFTMWFEL-I---GFDHSSTAALLSL-FAIGCAVGSFLGGVVADRISQAYPHS 311 (476)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~---g~s~~~~g~~~~~-~~~~~~~~~~~~g~l~dr~~~~~~~~ 311 (476)
+++++-. ...+.....|... +..|-+..+ . ..+..-.-+.... +++...+|.+...++-++-.|+-
T Consensus 243 ~i~~k~~-----~~~~~i~lvy~VTLsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l--- 314 (406)
T KOG1479|consen 243 DIFKKIK-----DLAFNIFLVYFVTLSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPDPRKL--- 314 (406)
T ss_pred HHHHHHH-----HHhhchheeeeeeeEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCCCcee---
Confidence 2222111 1111111122222 346766643 1 1223334444445 78888888777777655443322
Q ss_pred cchhHhHHHHHhhhhHHHhhhh---ccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhh
Q 011831 312 GRVMCAQFSAFMGIPFSWFLLT---AIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFE 388 (476)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 388 (476)
.+....=.+..+...++.. .....+. +........+|+..|.... ....+..+.+|++++-. .|....+.
T Consensus 315 ---~i~v~lR~lfiPlF~~cn~~~~~v~~~~~--~~~~~l~~~lglsnGYlts-l~m~~aPk~v~~~e~e~-aG~~m~~f 387 (406)
T KOG1479|consen 315 ---TIPVLLRLLFIPLFLLCNYPPLPVVFESD--GWFIFLMSLLGLSNGYLTS-LIMMYAPKQVKPSEKEA-AGNLMVFF 387 (406)
T ss_pred ---hHHHHHHHHHHHHHHHhccCCCCceecCc--hHHHHHHHHHHhccchHhh-heehhcCCCCChHHHHH-HHHHHHHH
Confidence 1222222222232222211 1112222 3345667778888887777 77788888888776644 44444444
Q ss_pred hhhhhhhhHHHHHHH
Q 011831 389 GSFSSFAAPLVGILS 403 (476)
Q Consensus 389 ~~~~~~~~~~~g~l~ 403 (476)
-.+|.....+.+++.
T Consensus 388 l~~Gl~~G~~~s~l~ 402 (406)
T KOG1479|consen 388 LVGGLALGSLLSWVF 402 (406)
T ss_pred HHHHHHHhhHHHHHH
Confidence 444443333444443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=98.03 E-value=5.2e-05 Score=72.09 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=88.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhh---h------HHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCC---cchhhHHHHHhhh
Q 011831 81 AVLTIGILCWAFSTAAVGASQ---H------FLHVGMWRAVNGFGLAIVIPALQSFIADSYKDG---VRGAGFGLLSLVG 148 (476)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~---~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 148 (476)
|+++++.++..+|.++..++. + .+.++++-.+.++|.|+.-|...++.+|.++++ +|.+.+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 567888999999998855542 2 256888899999999999999999999999765 4677888999999
Q ss_pred hhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhhee
Q 011831 149 TMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVF 194 (476)
Q Consensus 149 ~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~ 194 (476)
++|..+++.+.+++.+. .+|.+.|.+.++..++..+..+..
T Consensus 82 n~G~~~~~~~~~~i~~~-----~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQN-----YGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHCCCHHHHC-----S-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhHhhcccchhhccc-----cchhhhhhHHHHHHHHHHHHHHhC
Confidence 99999999999999987 999999999988776655554443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00014 Score=62.75 Aligned_cols=247 Identities=11% Similarity=0.051 Sum_probs=112.2
Q ss_pred CcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCCh
Q 011831 135 GVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDR 214 (476)
Q Consensus 135 ~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (476)
|+|+....+...+.++|.++....--.-.+........|++++.+.+++.++.+++..++-.+ .+...+++++++.+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~--fd~~~~~~k~~k~~- 78 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKN--FDIYSPKEKQEKEN- 78 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccccCccccccccc-
Confidence 678888888888899998876544221101100112469999999988876666665555222 21111111000000
Q ss_pred hhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhh--hhhHH-HHHHHHHHH--hCCC----h----hHHHH
Q 011831 215 DELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSL--PWTAM-VFFTMWFEL--IGFD----H----SSTAA 281 (476)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~--~g~s----~----~~~g~ 281 (476)
.. .+.....++.+|++.-|...+....... .+... ++...+... .+.+ . .....
T Consensus 79 ------~~-------~~~~~s~~~~LK~K~tw~w~~~Yg~wLv~~V~p~t~~~~~~~~~~s~~ni~~~~~~~~~~~~~~~ 145 (267)
T PF07672_consen 79 ------ST-------LSKKPSYKSILKEKETWKWILIYGIWLVVVVFPFTPSWFNILIWISPANIKSVVSGGGFNWIIPI 145 (267)
T ss_pred ------cc-------ccccchHHHHHccchHHHHHHHHHHHheeEEEeccchhHhHhhhcCcccccccccccccchhhHH
Confidence 00 0011334456777766665554433322 12111 222222222 1111 1 11122
Q ss_pred HHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHH--HHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhh
Q 011831 282 LLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFS--AFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWN 359 (476)
Q Consensus 282 ~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 359 (476)
.....-.+..+|.+..|...+..-+||.. ...+.+ ++.........+............+.+..++.|++.=..
T Consensus 146 ~~I~fv~g~~~G~~~ig~~nkt~~kRk~f----i~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~Wgi 221 (267)
T PF07672_consen 146 FQILFVAGYFLGPFTIGLWNKTNYKRKPF----IHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGI 221 (267)
T ss_pred HHHHHHHHHhhhceeeccchhhhhhhhhH----HHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 33344445556777777776655444432 222211 111111111111111222222333445555555554333
Q ss_pred hcccccchhhcc--cCccchhhHHHHHHhhhhhhhhhhhHHHHHH
Q 011831 360 ATAANGPMFAEV--VPAKHRTMIYAFDRAFEGSFSSFAAPLVGIL 402 (476)
Q Consensus 360 ~~~~~~~~~~~~--~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l 402 (476)
++ +......|. ..|++.|.-.|+.-.++++.-.+.-.+...+
T Consensus 222 Q~-ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~yTi~~Ii~S~i 265 (267)
T PF07672_consen 222 QG-VILNLPHEYKGYNPKKIGIQFGLIWGFGYIFYTIYDIILSVI 265 (267)
T ss_pred hH-HHhcChhhhcCCCcceehhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33 344444443 2445667777777777766655554444433
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.003 Score=60.87 Aligned_cols=115 Identities=14% Similarity=0.056 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhcc----c-cCcchHHHHHHHHHHH
Q 011831 278 STAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAI----P-QSVSNYYTYAVTLVLM 352 (476)
Q Consensus 278 ~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~ 352 (476)
..-.....++++..+|+.+..+..- -.+|.. .+....+.=++-.+...++.... + .-++. +...+..+++
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~~~-p~~~~~---~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d-~~~~~~~~l~ 382 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKFMW-PDEDSR---WLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGD-AYFIILMLLF 382 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeEe-eCCCcc---chHHHHHHHHHHHHHHHHhcCCccccCCeeeccc-HHHHHHHHHH
Confidence 3345666789999999986654321 111210 01222222222233222221110 0 01122 3345668888
Q ss_pred HHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHH
Q 011831 353 GLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPL 398 (476)
Q Consensus 353 g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~ 398 (476)
|+..|.... ....+..+..++++|..+-.+...+-.+|-.+|..+
T Consensus 383 gltnGy~~s-~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 383 GFSNGYLGS-LSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred HHhhhHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888 677778888888888777777777766666666654
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.5e-05 Score=53.37 Aligned_cols=55 Identities=15% Similarity=0.209 Sum_probs=48.0
Q ss_pred hhhhhhHH-HHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccC
Q 011831 255 GSLPWTAM-VFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYP 309 (476)
Q Consensus 255 ~~~~~~~~-~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~ 309 (476)
.++..+.. .|+|.|+++.|+|+.+.|.+.++..+..+++.++.|+++||.++++.
T Consensus 12 ~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~ 67 (77)
T PF12832_consen 12 YFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKV 67 (77)
T ss_pred HHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHH
Confidence 33333444 78999999999999999999999999999999999999999999873
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00025 Score=68.46 Aligned_cols=125 Identities=15% Similarity=0.159 Sum_probs=112.1
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHHhhhhhhh-HhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Q 011831 40 EVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAG-VLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLA 118 (476)
Q Consensus 40 ~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G-~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 118 (476)
.....+++++.+.+.+.+.......+++.+.. .+...+|-|+++..|+..-.+...+.+++++.|+++....+.++. .
T Consensus 267 yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-~ 345 (463)
T KOG2816|consen 267 YLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-G 345 (463)
T ss_pred EEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-c
Confidence 45556899999999988888888888888887 778889999999999999999999999999999999998877776 6
Q ss_pred hhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhc
Q 011831 119 IVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGH 165 (476)
Q Consensus 119 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~ 165 (476)
...|+..+.++.+.+++++|+.+++.+..-.+..+++|.+-+.+...
T Consensus 346 ~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 346 IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred chhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 78899999999999999999999999999999999999998888654
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0015 Score=59.63 Aligned_cols=123 Identities=20% Similarity=0.233 Sum_probs=70.4
Q ss_pred HHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHH
Q 011831 269 FELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVT 348 (476)
Q Consensus 269 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (476)
.+++|++..+++.++........+...+.|.+.||+|||+. ....+.+-. ..++ . -..++ ...+++.
T Consensus 61 Y~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~------cl~~cily~----~scl-~-k~~~~-~~~L~~G 127 (354)
T PF05631_consen 61 YESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKA------CLLFCILYS----LSCL-T-KHSSN-YPVLLLG 127 (354)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHH------HHHHHHHHH----HHHH-H-Hhccc-cHHHHHH
Confidence 36799999999999999999999999999999999999983 111111111 1111 1 11222 3445555
Q ss_pred HHHHHHHHHhhhcccccchh-hcc----cCccchhhHHHHHHhhhh-hhhhhhhHHHHHHHhh
Q 011831 349 LVLMGLTISWNATAANGPMF-AEV----VPAKHRTMIYAFDRAFEG-SFSSFAAPLVGILSEK 405 (476)
Q Consensus 349 ~~~~g~~~~~~~~~~~~~~~-~~~----~p~~~~g~~~g~~~~~~~-~~~~~~~~~~g~l~~~ 405 (476)
=++-|++...... ..-++. .|. +|++..+...+......| +-...+..++-++.|.
T Consensus 128 RvlgGiaTSLLfS-~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~ 189 (354)
T PF05631_consen 128 RVLGGIATSLLFS-AFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADW 189 (354)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHH
Confidence 5666766665554 333332 332 344444555554442222 2333444444455554
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00049 Score=69.56 Aligned_cols=141 Identities=16% Similarity=0.222 Sum_probs=90.1
Q ss_pred hhHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhh-ccccCCCcchhHhHHHHHhhhhHHHhhhhccc
Q 011831 259 WTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRI-SQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIP 336 (476)
Q Consensus 259 ~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (476)
|+....+..|+.+ +|++...+..+........-+..+++|+++|++ |+++. +.....+..+....+.....+
T Consensus 4 YGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~t------Il~~~ii~~lG~~llai~a~~ 77 (654)
T TIGR00926 4 YGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKT------ILYLSIVYVVGHALLSFGAIP 77 (654)
T ss_pred eecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH------HHHHHHHHHHHHHHHHhccCc
Confidence 4445556666665 899999888888887777778888999999986 66553 111111111111111111111
Q ss_pred cC--cchHHHHHHHHHHHHHHHHhhhcccccchhhcccCcc---chhhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 337 QS--VSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAK---HRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 337 ~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~---~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
.. ........+.+.+...|.+..-+ ...+...|-++++ .+-....+.....++|+.+++.+.+++.+..
T Consensus 78 ~~~~~~~~~~~l~gLaLia~G~GgiKp-~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~ 151 (654)
T TIGR00926 78 SSGHPLHDLLDLLGLALIALGTGGIKP-CVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDV 151 (654)
T ss_pred ccccchHHHHHHHHHHHHHhhcccccc-CchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11 11122244556666777777766 6778888877643 3677888999999999999999999998664
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.056 Score=51.52 Aligned_cols=281 Identities=11% Similarity=0.048 Sum_probs=158.6
Q ss_pred hHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCC---CCCchhHHHHHHHH-HHHhhhhhhhHhhhhcCCchhHHHHHH
Q 011831 13 ISLSLILINLAAIMERADENLLPSVYKEVSEAFNA---GPSDLGYLTFIRNF-VQGLSSPLAGVLVINYDRPAVLTIGIL 88 (476)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---s~~~~g~~~s~~~l-~~~~~~~~~G~l~dr~Grr~~~~~~~~ 88 (476)
.+..+..+.+..++..++.+. +..++|.+.. ++..+.++-+..-+ +..+..++.+++++++.+.+++-..+.
T Consensus 25 E~~kflpl~Ll~f~I~~ny~~----lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~ 100 (509)
T COG3202 25 ELKKFLPLALLFFCILFNYNL----LRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILG 100 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 455556666666666655433 4557777654 45567777777777 677889999999999999999988888
Q ss_pred HHHHHHHHHHhhh---------h----------H-------------HHHHHHHHHHHhhhhhhhh-HHHHHHhhhcCCC
Q 011831 89 CWAFSTAAVGASQ---------H----------F-------------LHVGMWRAVNGFGLAIVIP-ALQSFIADSYKDG 135 (476)
Q Consensus 89 ~~~~~~~~~~~~~---------~----------~-------------~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~ 135 (476)
.+....+++++.- + . |...+.-.+.=+-...... .-.....|.+..+
T Consensus 101 ~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~ 180 (509)
T COG3202 101 FFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIE 180 (509)
T ss_pred HHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 8888888877631 1 0 2222222222222222222 4456788999999
Q ss_pred cchhhHHHHHhhhhhhhhhHHHHHHHHhhcccC-----CCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCC
Q 011831 136 VRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFW-----GVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGE 210 (476)
Q Consensus 136 ~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~-----~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (476)
|-.|.++.++.+.+++..++..+..++..+... .+..-+..+.+.+..+++...+..+.-+...+.+.-.
T Consensus 181 eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~----- 255 (509)
T COG3202 181 EAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFY----- 255 (509)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchh-----
Confidence 999999999999999999999999998874110 0011344444444444443333333222211111100
Q ss_pred CCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhhhhhHH--HHHHHHHHHhCCChhH---HHHHHHH
Q 011831 211 NFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAM--VFFTMWFELIGFDHSS---TAALLSL 285 (476)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~s~~~---~g~~~~~ 285 (476)
.+....+++ +...-...+..+.+.++|..+.+.+...+........ +|-...-+.+-..... .|.+...
T Consensus 256 ---~~~~~kk~~---~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~ 329 (509)
T COG3202 256 ---LRAKKKKKK---KKLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIW 329 (509)
T ss_pred ---HHHhccccc---ccccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHH
Confidence 000000000 0011223455666778888777766665554444333 3322222222211111 2333444
Q ss_pred HHhh-hhhhhchhhhhhhhhcccc
Q 011831 286 FAIG-CAVGSFLGGVVADRISQAY 308 (476)
Q Consensus 286 ~~~~-~~~~~~~~g~l~dr~~~~~ 308 (476)
.++. .++....++.+.+|.|-..
T Consensus 330 tgvv~~v~~~~~~s~~ir~~GW~~ 353 (509)
T COG3202 330 TGVVSLVVFLFPGSNLIRRVGWFT 353 (509)
T ss_pred HHHHHHHHHHhhhHHHHHHhhHHH
Confidence 4554 4556667788888887654
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0014 Score=61.21 Aligned_cols=133 Identities=11% Similarity=0.056 Sum_probs=81.8
Q ss_pred HHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhc-cccCcchH
Q 011831 265 FTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTA-IPQSVSNY 342 (476)
Q Consensus 265 ~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 342 (476)
...+.++ +| +...+-+...++.+..++-.+.+-|+.||+|-|... ..+.....+...+=... .+..++..
T Consensus 67 i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~-------llgt~ln~iGa~Ir~iss~p~v~~~f 138 (480)
T KOG2563|consen 67 INNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTAL-------LLGTVLNGIGAWIRLISSLPFVPPLF 138 (480)
T ss_pred HHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHH-------HHHHHHHHHHHHHhhhccCccccccc
Confidence 3445555 67 556666777788899999999999999999998632 11122211111121111 12122222
Q ss_pred H--HHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 343 Y--TYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 343 ~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
+ +......+.+........ ...-+..--+|+++|+++..+..+...+|.+++..+...+..+.
T Consensus 139 ~~~l~~~Gq~iaa~Aq~Fim~-lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 139 RRPLTHTGQSIAAAAQPFILG-LPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred hhhhhHHhHHHHHHhhhHhhc-cccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 2 344455555554443333 21223334479999999999999999999999988888887763
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00057 Score=60.16 Aligned_cols=143 Identities=12% Similarity=0.044 Sum_probs=103.7
Q ss_pred hhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhh
Q 011831 52 LGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADS 131 (476)
Q Consensus 52 ~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 131 (476)
.|.+.-.-.+...+..+.+....||+.--.=..+..++.+.+.++.+++++.++=+.+-.+..++.|.....-.++-+.
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~- 142 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR- 142 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc-
Confidence 4566666667777778888888998755444555667778888899999999998888888888888766655444333
Q ss_pred cCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCC
Q 011831 132 YKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKA 202 (476)
Q Consensus 132 ~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~ 202 (476)
+++ ...+.++.+.+...++|..--..+.++ -..+-|...++...+.++.+...++.+++|+...
T Consensus 143 Y~~----~~i~~WSSGTGgAGliGa~SYa~lT~~---~~~spk~Tlli~l~lP~lfa~~yf~lL~~pes~~ 206 (409)
T KOG3880|consen 143 YPS----IVIAGWSSGTGGAGLIGASSYAFLTSW---ANLSPKSTLLIMLFLPALFAFAYFFLLKSPESVY 206 (409)
T ss_pred CCC----ceeccccCCCCcchhhhhhHHHHHhhh---cCCChhhHHHHHHHHHHHHHHHHHheeCCCcccc
Confidence 322 345566677777777777766667663 2367788999988888888888888888876654
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0077 Score=59.53 Aligned_cols=140 Identities=14% Similarity=0.134 Sum_probs=83.3
Q ss_pred HHHHHHHHhccchhhHHH-HHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHH--HH-HHHHHH-
Q 011831 23 AAIMERADENLLPSVYKE-VSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILC--WA-FSTAAV- 97 (476)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~--~~-~~~~~~- 97 (476)
..++.++..-.+-.+... +.--+|-+..+.+.+.+++..+.++|+.+++++.++.-++.. ..-+.+ .+ ++..+.
T Consensus 22 ~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~ 100 (521)
T PRK03612 22 AVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILY 100 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 333444444344333333 333457778888999999999999999999988744332222 111111 11 111111
Q ss_pred ---HhhhhH-HHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhh
Q 011831 98 ---GASQHF-LHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAG 164 (476)
Q Consensus 98 ---~~~~~~-~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~ 164 (476)
++.... ..++..-++.++..|+..|....+..+.. .++-++..|-......+|.++|.++.+++.-
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl 170 (521)
T PRK03612 101 AAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLL 170 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence 111111 12234455677888888887777665533 2345677888888999999999998887764
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.34 E-value=2.7e-05 Score=76.91 Aligned_cols=144 Identities=13% Similarity=0.053 Sum_probs=2.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHh-HHHHHhhhhHHHhhhh----------
Q 011831 265 FTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCA-QFSAFMGIPFSWFLLT---------- 333 (476)
Q Consensus 265 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------- 333 (476)
++.+=++++++..++|.+.+.+-++.++..++..++.+|..|-|..-...++. +.+++.+++=....-.
T Consensus 26 lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~ 105 (539)
T PF03137_consen 26 LTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNG 105 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccc
Confidence 44444459999999999999999999999999999988755443211111111 1111111111110000
Q ss_pred --------c-------------------cccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHh
Q 011831 334 --------A-------------------IPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRA 386 (476)
Q Consensus 334 --------~-------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~ 386 (476)
. .......+.++++..++.|+|....++ ...+++-|.+++++.+...|+..+
T Consensus 106 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~t-LG~tYiDDnv~~~~splYiGi~~~ 184 (539)
T PF03137_consen 106 NSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYT-LGITYIDDNVSKKNSPLYIGILYA 184 (539)
T ss_dssp ----------------------------------------------SSS-------------------------------
T ss_pred ccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcc-ceeeeeccccccccCccchhhhhH
Confidence 0 000001245566778889999888888 899999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHhhhhcC
Q 011831 387 FEGSFSSFAAPLVGILSEKMFGY 409 (476)
Q Consensus 387 ~~~~~~~~~~~~~g~l~~~~~~~ 409 (476)
...+|-++|-.+++...+..-.+
T Consensus 185 ~~~lGPa~Gf~lg~~~L~~yvD~ 207 (539)
T PF03137_consen 185 MSILGPALGFLLGSFCLRIYVDF 207 (539)
T ss_dssp -----------------------
T ss_pred HhhccHHHHHHHHHHHHhceeCC
Confidence 99999888888888887764443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0044 Score=56.30 Aligned_cols=166 Identities=10% Similarity=0.060 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCC-chhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHH
Q 011831 16 SLILINLAAIMERADENLLPSVYKEVSEAFNAGPS-DLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFST 94 (476)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~-~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~ 94 (476)
..+.+.+++++.....-++.+.......+++-+.- ....-.-.-..-..+..++.|...|+..|+|++...+.+--++.
T Consensus 28 ~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv 107 (503)
T KOG2601|consen 28 TVIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSV 107 (503)
T ss_pred eeehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHH
Confidence 34567888888888888888888888887764322 22222222233456778888999999999999888876655554
Q ss_pred HHHHh------h------hhHHHHHHHHHHHHhhhhhhh--hHHHH--HHhhhc----CCCcchhhH---HHHHhhhhhh
Q 011831 95 AAVGA------S------QHFLHVGMWRAVNGFGLAIVI--PALQS--FIADSY----KDGVRGAGF---GLLSLVGTMG 151 (476)
Q Consensus 95 ~~~~~------~------~~~~~l~~~r~l~G~~~~~~~--~~~~~--~i~~~~----~~~~r~~~~---~~~~~~~~lG 151 (476)
++++- . .+++.+..+-++.-.-.+... ..+.+ +=.||. ..+.+.... +..-..-...
T Consensus 108 ~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~t 187 (503)
T KOG2601|consen 108 IVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQST 187 (503)
T ss_pred HHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhh
Confidence 44332 1 255555554443332212111 11111 223443 233333333 4444455566
Q ss_pred hhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Q 011831 152 GIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVL 186 (476)
Q Consensus 152 ~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~ 186 (476)
..+.|.+.+.+.++ .+-|..-.+.++-+++
T Consensus 188 n~Lapv~tg~Iitf-----vsl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 188 NLLAPVITGLIITF-----VSLRASAGTFAAWALV 217 (503)
T ss_pred hchhhhhhccccee-----echhhhhhhhHHHHHH
Confidence 78899999999887 5556544444444333
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0067 Score=60.95 Aligned_cols=140 Identities=11% Similarity=0.058 Sum_probs=97.7
Q ss_pred HHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhH-HHHHhhhhHHHh--------h---hhcc
Q 011831 269 FEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQ-FSAFMGIPFSWF--------L---LTAI 335 (476)
Q Consensus 269 ~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~-~~~~~~~~~~~~--------~---~~~~ 335 (476)
+++ ++++..+.|++.+.+-++..+...+..+...|..|-+..-.+..++. .+++..++=... . ....
T Consensus 123 iErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~ 202 (735)
T KOG3626|consen 123 IERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVEN 202 (735)
T ss_pred hhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccC
Confidence 444 89999999999999999999999988888888766654332222222 222222220000 0 0000
Q ss_pred c--------------------------cCc--chHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhh
Q 011831 336 P--------------------------QSV--SNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAF 387 (476)
Q Consensus 336 ~--------------------------~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 387 (476)
+ ... ..+.++.+..++.|+|....++ ...+++-|...+++.....|+..++
T Consensus 203 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t-lGisYiDDnvk~~~SplYlgi~~~~ 281 (735)
T KOG3626|consen 203 PSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT-LGISYIDDNVKKKNSPLYLGILYSM 281 (735)
T ss_pred CccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc-CCCccccccccccCCcHHHHHHHHH
Confidence 0 000 1455677888889998887777 8899999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHhhhhcC
Q 011831 388 EGSFSSFAAPLVGILSEKMFGY 409 (476)
Q Consensus 388 ~~~~~~~~~~~~g~l~~~~~~~ 409 (476)
..+|-++|-.+++.+......+
T Consensus 282 ~~lGPaiGfllgS~~l~lYvD~ 303 (735)
T KOG3626|consen 282 AILGPAIGFLLGSFCLKLYVDF 303 (735)
T ss_pred HHhhhHHHHHHHHHHHHeeecc
Confidence 9999889988888888776544
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00076 Score=63.00 Aligned_cols=133 Identities=10% Similarity=0.084 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhh----hccccCCCcchhHhHHHHHhhhhHHHhhh-----
Q 011831 262 MVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADR----ISQAYPHSGRVMCAQFSAFMGIPFSWFLL----- 332 (476)
Q Consensus 262 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 332 (476)
.+|+|.|+++.|.+....+.+.....+.+.+-+++.|..+|| +||||+. +...+..+.+....+.+
T Consensus 52 lsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPf-----I~~~s~~i~~~l~Lig~aaDig 126 (498)
T KOG0637|consen 52 LSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPF-----ILAGSLLIAVSLFLIGYAADIG 126 (498)
T ss_pred hccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccch-----HHHhhHHHHHHHhhhhhHhhhh
Confidence 389999999999999999988888889999999999999996 5888874 22222222222111111
Q ss_pred -hccccCcc-----hHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhh-HHHHHHhhhhhhhhhhhHHHH
Q 011831 333 -TAIPQSVS-----NYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTM-IYAFDRAFEGSFSSFAAPLVG 400 (476)
Q Consensus 333 -~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~-~~g~~~~~~~~~~~~~~~~~g 400 (476)
........ ....+++.+.+.-+....... ..-++..|+..++++-+ +++....+..+|+.+|-..++
T Consensus 127 ~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qg-p~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 127 LLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQG-PCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred HHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhh-hHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 11111111 112222333334444545555 46788888887676666 999999998988888776655
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0043 Score=60.14 Aligned_cols=153 Identities=12% Similarity=0.069 Sum_probs=109.3
Q ss_pred CCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhh----------hhHHHHHHHHHHHHhh
Q 011831 47 AGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGAS----------QHFLHVGMWRAVNGFG 116 (476)
Q Consensus 47 ~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~r~l~G~~ 116 (476)
.++...|.+..+..++..++..+..+..-+..-|+++..+.++..+..+.-..- ++.+-.+.--++..+.
T Consensus 252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~ 331 (433)
T PF03092_consen 252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI 331 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence 777788888888888888999999888888888999888888777666542211 1222223334566666
Q ss_pred hhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccC---CCCchhHHHHHHHHHHHHHHHHhhe
Q 011831 117 LAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFW---GVPGWRCAFILMATLSVLIAFLVLV 193 (476)
Q Consensus 117 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~---~~~~wr~~f~i~~~~~~~~~~~~~~ 193 (476)
....+-....+++|..|+..-|..+++.....++|..++..++..+.+.... +..+-.+..++..+..++...+..+
T Consensus 332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~l 411 (433)
T PF03092_consen 332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFL 411 (433)
T ss_pred HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 6666677778999999999999999999999999999999999999876331 1122344555566666444445545
Q ss_pred eeccCC
Q 011831 194 FVVDPR 199 (476)
Q Consensus 194 ~~~~~~ 199 (476)
++|+.+
T Consensus 412 Lp~~~~ 417 (433)
T PF03092_consen 412 LPPQKR 417 (433)
T ss_pred cCCCch
Confidence 555433
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.1 Score=49.98 Aligned_cols=143 Identities=12% Similarity=0.028 Sum_probs=74.9
Q ss_pred HHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccC---c
Q 011831 264 FFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQS---V 339 (476)
Q Consensus 264 ~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 339 (476)
-.|.++.+ +.-+-.-.+.+...-.+..++.....|...||..|.+..+..+..--.+...+.......+...... .
T Consensus 24 a~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~ 103 (432)
T PF06963_consen 24 AVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSS 103 (432)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccc
Confidence 36777766 4444444555555667778888888899999998887544222222222222222222222111111 1
Q ss_pred chHHHHHHHHHHHHHHHHhhhc----ccccchhhccc--CccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 340 SNYYTYAVTLVLMGLTISWNAT----AANGPMFAEVV--PAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 340 ~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~~~~--p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
...........+.|........ .+--.++..+. +++.....++...-+-.+...++|.+.|.+.+..
T Consensus 104 ~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~ 176 (432)
T PF06963_consen 104 WLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFA 176 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1112122222233322222222 01122222333 3455667777777777778889999999999874
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.085 Score=47.47 Aligned_cols=72 Identities=10% Similarity=0.041 Sum_probs=52.5
Q ss_pred HHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhc
Q 011831 60 NFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSY 132 (476)
Q Consensus 60 ~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 132 (476)
.+.-+..+++.+.+..++|.|+.+.++...+...-. .-+-+.+..++-.-...|++.+..+..--+|+++.-
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence 444556666667999999999999998877664432 223467788899999999999988876656655543
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.091 Score=52.11 Aligned_cols=127 Identities=13% Similarity=0.088 Sum_probs=69.7
Q ss_pred hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHH
Q 011831 272 IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVL 351 (476)
Q Consensus 272 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (476)
+|-+....+.+.+.+..+..+|+.+++++.++..++.. ..-..+++ ++.....+...................+.
T Consensus 45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~----~~e~~i~l-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 119 (521)
T PRK03612 45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV----AVELLLAL-LGGLSALILYAAFAFQGLSRLLLYVLVLL 119 (521)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888888888888888888888888777643332211 00001111 11111111111111111111223344455
Q ss_pred HHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhh
Q 011831 352 MGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEK 405 (476)
Q Consensus 352 ~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 405 (476)
.++..|...| ...-+..+ ...++.+...|-......+|+.+|+.+.+.+.--
T Consensus 120 ~~~l~G~~~P-l~~~~~~~-~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp 171 (521)
T PRK03612 120 IGLLIGMEIP-LLMRILQR-IRDQHLGHNVATVLAADYLGALVGGLAFPFLLLP 171 (521)
T ss_pred HHHHHHHHHH-HHHHHHHh-ccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHH
Confidence 6677776666 43333333 2223456778888899999999999998887653
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.09 Score=50.52 Aligned_cols=103 Identities=16% Similarity=0.162 Sum_probs=80.0
Q ss_pred HHHHHhhhhhhhHhhh---hcCCchhHHHHHHHHHHHHHHHHhh------------------hhHHHHHHHHHHHHhhhh
Q 011831 60 NFVQGLSSPLAGVLVI---NYDRPAVLTIGILCWAFSTAAVGAS------------------QHFLHVGMWRAVNGFGLA 118 (476)
Q Consensus 60 ~l~~~~~~~~~G~l~d---r~Grr~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~l~G~~~~ 118 (476)
.++..++..+.+.+.+ |+||++.+.++..+..++.++.-.. +++....+.-++.|++.+
T Consensus 289 g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~ 368 (461)
T KOG3098|consen 289 GLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDA 368 (461)
T ss_pred hHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHH
Confidence 3444455555666664 5899999999999988888876552 245567777899999999
Q ss_pred hhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHh
Q 011831 119 IVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMA 163 (476)
Q Consensus 119 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~ 163 (476)
......+.++.+.+ +++|..+.++...-..++..++-.......
T Consensus 369 ~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~~ 412 (461)
T KOG3098|consen 369 CFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYLL 412 (461)
T ss_pred HHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 99999999999999 888999999998888888877665555443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.018 Score=54.21 Aligned_cols=115 Identities=10% Similarity=-0.007 Sum_probs=82.6
Q ss_pred CCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHH---HHHHhhhhHHHHHHHHHHHHhhhhhhhhHH
Q 011831 48 GPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFST---AAVGASQHFLHVGMWRAVNGFGLAIVIPAL 124 (476)
Q Consensus 48 s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 124 (476)
..++..+....|.+|-.++.--...+ |+-+.+++.+-..+..+.. ...-+.++.|..++.-+..|+..|..+.-.
T Consensus 279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNt 356 (402)
T PF02487_consen 279 PRDQYRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNT 356 (402)
T ss_pred HHHHHHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34566777788887777665432221 3322223222222222222 223345788988889999999999999999
Q ss_pred HHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhh
Q 011831 125 QSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAG 164 (476)
Q Consensus 125 ~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~ 164 (476)
...+.|-.|+++|..++|..+.+.++|..++..++-.+-.
T Consensus 357 F~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~ 396 (402)
T PF02487_consen 357 FYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP 396 (402)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999877754
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.091 Score=51.02 Aligned_cols=43 Identities=9% Similarity=-0.018 Sum_probs=38.8
Q ss_pred cccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhh
Q 011831 363 ANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEK 405 (476)
Q Consensus 363 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 405 (476)
..+.+++|....++..+-.++....+++|..+++.+..++.+.
T Consensus 149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~ 191 (472)
T TIGR00769 149 LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKL 191 (472)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5689999999999999999999999999999999998888754
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.12 Score=47.23 Aligned_cols=132 Identities=18% Similarity=0.232 Sum_probs=84.0
Q ss_pred HHHHHHHHHhCCCh--hHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcc
Q 011831 263 VFFTMWFELIGFDH--SSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVS 340 (476)
Q Consensus 263 ~~~~~~~~~~g~s~--~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (476)
...+.+..+.+.+. ...+.......+...++.++.|.+.||.|||+.. . .+... .....+....... .
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~-----~--~~~~~-~~~~~~~~~~~~~--~ 92 (338)
T COG0477 23 PALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVL-----I--IGLLL-FLLGTLLLALAPN--V 92 (338)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHH-----H--HHHHH-HHHHHHHHHhCcc--c
Confidence 34566666665555 4678888888888888889999999999887421 1 11111 0111111111111 2
Q ss_pred hHHHHHHHHHHHHHHHHhhhcccccchhhcccCc-cchhhHHHHHHh-hhhhhhhhhhHHHHHHHhh
Q 011831 341 NYYTYAVTLVLMGLTISWNATAANGPMFAEVVPA-KHRTMIYAFDRA-FEGSFSSFAAPLVGILSEK 405 (476)
Q Consensus 341 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~-~~~g~~~g~~~~-~~~~~~~~~~~~~g~l~~~ 405 (476)
............|++.+...+ ....+..|..|+ +.|+...+.... ....+..++|.+.+.+.+.
T Consensus 93 ~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 93 GLALLLILRLLQGLGGGGLLP-VASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred hHHHHHHHHHHHHhhhHHHHH-HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233343444446777776666 678899999887 578888888888 5667777888777777665
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.096 Score=42.38 Aligned_cols=109 Identities=12% Similarity=0.093 Sum_probs=72.6
Q ss_pred HHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhc
Q 011831 282 LLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNAT 361 (476)
Q Consensus 282 ~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 361 (476)
-.++......++.++.+.+.+++|.|+. ++++.....+..... ..++ ++.+.....+.|++.+....
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K~s-----------m~lg~~~y~~y~~~~-~~~~-~~~l~~~s~l~G~~~a~lW~ 108 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPKWS-----------MILGSLGYAIYIASF-FYPN-SYTLYPASALLGFGAALLWT 108 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHH-----------HHHHHHHHHHHHHHH-Hhhh-HHHHHHHHHHHhhhhHHhhH
Confidence 3445566667777888899999999873 122221111111111 1122 34456777788888888887
Q ss_pred ccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHh
Q 011831 362 AANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSE 404 (476)
Q Consensus 362 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 404 (476)
..-.++.+...++.+++-.++...+.+.+..+|..+.-.+..
T Consensus 109 -aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 109 -AQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred -hhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667888888888999999999999988887777776554443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.17 Score=47.91 Aligned_cols=129 Identities=14% Similarity=0.051 Sum_probs=84.3
Q ss_pred HHHHHHHHH--hCCChhHHHHHHHH-HHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCc
Q 011831 263 VFFTMWFEL--IGFDHSSTAALLSL-FAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSV 339 (476)
Q Consensus 263 ~~~~~~~~~--~g~s~~~~g~~~~~-~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (476)
.|+..|+.+ .|++..+...-.-+ ..=..++.-+....+.|.++.|.. .+...+.....-.++.+ .+
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpv-------iil~~~~~i~t~~lll~----~~ 92 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPV-------IILQALSYIITWLLLLF----GT 92 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHH-------HHHHHHHHHHHHHHHHH----HC
Confidence 567777754 89988877543333 233455566677789999998862 22222222222212111 22
Q ss_pred chHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhh
Q 011831 340 SNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEK 405 (476)
Q Consensus 340 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 405 (476)
+ ...+-+.-++.|...+.-.. .++++-...|+++.-++.+...+..-+|..++..++-.+...
T Consensus 93 s-v~~mq~~q~~yg~~~a~eva--y~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~ 155 (412)
T PF01770_consen 93 S-VLAMQLMQFFYGLATAAEVA--YYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF 155 (412)
T ss_pred c-HHHHHHHHHHHHHHHHHHHH--HHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 34455777888887766443 567777778889888999999999888888888888877764
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.0025 Score=58.74 Aligned_cols=112 Identities=17% Similarity=0.138 Sum_probs=3.0
Q ss_pred HHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhc-----cccCcchHHHHHHHHHHHHHHH
Q 011831 282 LLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTA-----IPQSVSNYYTYAVTLVLMGLTI 356 (476)
Q Consensus 282 ~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~ 356 (476)
.+..++++..+|+.+.++..-+..+++.. ......=++..+...++-.. .+..-..-+..++..+++|+..
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l----~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TN 262 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWL----WILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTN 262 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccH----HHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHcc
Confidence 45578999999999888743221122211 11111111112222222111 0000011133456677889888
Q ss_pred HhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHH
Q 011831 357 SWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPL 398 (476)
Q Consensus 357 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~ 398 (476)
|...+ ....+..+..++++|..+-.+...+-..|-.+|..+
T Consensus 263 Gyl~t-l~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 263 GYLST-LAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp ----H-HHH---------------------------------
T ss_pred chhhh-ceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888 777888888888888777777666666665555544
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.0027 Score=54.52 Aligned_cols=66 Identities=12% Similarity=0.230 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHh---------hhhcCCchh
Q 011831 17 LILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVL---------VINYDRPAV 82 (476)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l---------~dr~Grr~~ 82 (476)
.....++.+.+.....++-..+-.+.++.+.++.....++-...+.-++..++.|.. .||+|||+.
T Consensus 19 vf~yGvGHmlNDitAScWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~ 93 (412)
T KOG4830|consen 19 VFAYGVGHMLNDITASCWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMS 93 (412)
T ss_pred eeeechhHHHhhHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceee
Confidence 445567788888888888777778888999999888888888888888888888743 468999985
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.059 Score=38.18 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=40.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhcccc
Q 011831 263 VFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAY 308 (476)
Q Consensus 263 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 308 (476)
..+|...++.++|..+++.+.+...++..+|.+...++.++..+++
T Consensus 13 plLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~ 58 (85)
T PF06779_consen 13 PLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRR 58 (85)
T ss_pred hHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 4578888889999999999999999999999999999888755544
|
Note that many members are hypothetical proteins. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.88 Score=42.23 Aligned_cols=66 Identities=11% Similarity=0.141 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHhhhhhhhHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhh-----hhccccCC
Q 011831 243 PTFQIIVLQGIVGSLPWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVAD-----RISQAYPH 310 (476)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d-----r~~~~~~~ 310 (476)
+.+..++.....+...++...-+|.+++..|.|-.+.+.....+.= .--.+++..+.| |+||||..
T Consensus 31 ~~illLl~LYllQGiP~GL~~~iP~lL~ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~GrrksW 101 (510)
T KOG3574|consen 31 SSILLLLFLYLLQGIPLGLIGAIPLLLQAKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKSW 101 (510)
T ss_pred hhHHHHHHHHHHcCCchhHhhhhHHHhcCCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccce
Confidence 4566667777778788888888899998777776665544332211 112345566666 99999864
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.20 E-value=1.1 Score=42.09 Aligned_cols=36 Identities=11% Similarity=0.107 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhh
Q 011831 342 YYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTM 379 (476)
Q Consensus 342 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~ 379 (476)
....++.....+.+.+.... ..+...++ +|++....
T Consensus 117 f~vt~~~vv~~~~a~a~~qg-s~~G~a~~-~P~~ytqa 152 (406)
T KOG1479|consen 117 FLVTLIIVVLLNLANAVVQG-SLYGLAGL-FPSEYTQA 152 (406)
T ss_pred HHHHHHHHHHHhhhhhhhcc-chhhhhhc-CCHHHHHH
Confidence 34455566667777776666 55666655 67665433
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=93.76 E-value=2.6 Score=41.44 Aligned_cols=42 Identities=12% Similarity=0.007 Sum_probs=37.6
Q ss_pred cccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHh
Q 011831 363 ANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSE 404 (476)
Q Consensus 363 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 404 (476)
..+.++.|..+.++..+-.++.....+++..++..+..++.+
T Consensus 164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999999999999988888888877
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=93.16 E-value=3.1 Score=40.44 Aligned_cols=33 Identities=9% Similarity=0.092 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccchhhcccCccc
Q 011831 342 YYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKH 376 (476)
Q Consensus 342 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~ 376 (476)
....++..++.|++.+.... ....+.+. +|++.
T Consensus 106 f~~~~~~v~~~g~~~~~~q~-s~~gla~~-fp~~~ 138 (437)
T TIGR00939 106 FVTTMASVVIINSGMALLQG-SLFGLAGV-FPSTY 138 (437)
T ss_pred HHHHHHHHHHHHhhhhhhcc-cchhhccc-CCHHH
Confidence 44455666677888777776 55666654 67543
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.51 E-value=3.1 Score=36.76 Aligned_cols=137 Identities=10% Similarity=-0.044 Sum_probs=88.5
Q ss_pred chhHHHHHHHHHHHhhhhhhhHhhhhcCCch--hHHHHHHHHHHHHHHHHhh----hh---HHHHHHHHHHHHhhhhhhh
Q 011831 51 DLGYLTFIRNFVQGLSSPLAGVLVINYDRPA--VLTIGILCWAFSTAAVGAS----QH---FLHVGMWRAVNGFGLAIVI 121 (476)
Q Consensus 51 ~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~--~~~~~~~~~~~~~~~~~~~----~~---~~~l~~~r~l~G~~~~~~~ 121 (476)
--|.+.+.++++.++++-+..++..|-..|. .+.+..++..+...+.... ++ .-.=+++-.+.-.+.|..+
T Consensus 283 PhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfw 362 (454)
T KOG4332|consen 283 PHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFW 362 (454)
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcc
Confidence 3589999999999999999999988766553 5666655555554443332 11 1112344455556778899
Q ss_pred hHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhh
Q 011831 122 PALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVL 192 (476)
Q Consensus 122 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~ 192 (476)
|....+=+++.|++.|...+.++..-.++=..++ ....+......+-|..|-++.+...+..+...
T Consensus 363 PSimkmRsqyIPEearstimNfFRvPLnifvClv-----Lynlh~~~~p~~tr~mf~icS~~~~~a~i~~~ 428 (454)
T KOG4332|consen 363 PSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLV-----LYNLHVDAFPTTTRNMFGICSAFLFVASILQR 428 (454)
T ss_pred hHHHHHHHhhCCHHHHhhhhhheechhhHhhhhh-----heecccccCccccchhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999988765444322221 11111112234667888888887666655443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=91.18 E-value=0.6 Score=44.39 Aligned_cols=63 Identities=14% Similarity=0.085 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHhhhcccccchhhcccCcc---chhhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 343 YTYAVTLVLMGLTISWNATAANGPMFAEVVPAK---HRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 343 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~---~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
..+.+.+.++++|.|..=+ ...++..|-++++ ++.+.........++|..+++.+.+++.++.
T Consensus 34 ~~~~~gL~lia~G~G~~K~-ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~ 99 (372)
T PF00854_consen 34 GLFYIGLALIAVGTGGIKP-NISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNY 99 (372)
T ss_dssp CHHHHHHHHHHHHHHCCHH-HHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS
T ss_pred HHHHHHHHHHHhccccccc-cHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhcccc
Confidence 3456777778888888877 7788888888755 4567788889999999999999999998773
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.32 E-value=28 Score=32.29 Aligned_cols=96 Identities=14% Similarity=0.058 Sum_probs=63.6
Q ss_pred hhhHHHHHHhc-CCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHH-------HHHHHHh--hhhHH
Q 011831 35 PSVYKEVSEAF-NAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAF-------STAAVGA--SQHFL 104 (476)
Q Consensus 35 ~~~~~~i~~~~-~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~-------~~~~~~~--~~~~~ 104 (476)
-..+..+...+ |-+.-|.+.+.+.|.....+++...-++.|.--.-+.+..-.++..+ ..+.+++ .++-+
T Consensus 27 Elal~tLatyLlG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~ 106 (508)
T COG4262 27 ELALGTLATYLLGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRL 106 (508)
T ss_pred HHHHHHHHHHhcCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHH
Confidence 33444555555 55666899999999999999999888887753332222111111111 1112222 34677
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHhh
Q 011831 105 HVGMWRAVNGFGLAIVIPALQSFIAD 130 (476)
Q Consensus 105 ~l~~~r~l~G~~~~~~~~~~~~~i~~ 130 (476)
.+++.-++.|.-.|...|..+.++..
T Consensus 107 Vly~lt~vIG~LVG~EiPL~mrml~~ 132 (508)
T COG4262 107 VLYALTAVIGVLVGAEIPLLMRMLQR 132 (508)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 88899999999999999999998877
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.51 E-value=3.7 Score=37.12 Aligned_cols=114 Identities=16% Similarity=0.066 Sum_probs=79.9
Q ss_pred hcCCC-CCchhHHHHHHHHHHHhhhhhhhHhhhhcCCch------hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Q 011831 44 AFNAG-PSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPA------VLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFG 116 (476)
Q Consensus 44 ~~~~s-~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 116 (476)
.+..+ ..|+-|....|.+|-.+..-- -|+=+-+ ++..-.+++.+...+..+.+++|...+.-+.-|+-
T Consensus 281 g~sls~~sqYRwyqvlYQlGVFiSRSS-----~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLl 355 (409)
T KOG3880|consen 281 GFSLSKDSQYRWYQVLYQLGVFISRSS-----INLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLL 355 (409)
T ss_pred CCccchhhcchhhheeeeeeEEEEecc-----ceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 34443 336778888888775544322 1211111 12233344455555666678888888888999998
Q ss_pred hhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHH
Q 011831 117 LAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIM 162 (476)
Q Consensus 117 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l 162 (476)
.|..++-..--+.+-.++++|..+++....+-++|..++..++-.+
T Consensus 356 GGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 356 GGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred CchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 8888888888888888999999999999999999998888777554
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=85.25 E-value=26 Score=34.21 Aligned_cols=43 Identities=9% Similarity=-0.011 Sum_probs=36.9
Q ss_pred cccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhh
Q 011831 363 ANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEK 405 (476)
Q Consensus 363 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 405 (476)
..+....|....++..+-.++.+...+++..++..+..++.++
T Consensus 168 lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 168 LFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred HHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4577888999889999999999999999988888888887775
|
|
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.21 E-value=5.5 Score=29.26 Aligned_cols=36 Identities=19% Similarity=0.126 Sum_probs=29.7
Q ss_pred ccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhhcC
Q 011831 374 AKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGY 409 (476)
Q Consensus 374 ~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~ 409 (476)
++.++.+.++-...-.+++.+.....||+.|+..+-
T Consensus 37 ~s~k~~~~a~klssefIsGilVGa~iG~llD~~agT 72 (116)
T COG5336 37 ESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAGT 72 (116)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456778888888888888998888999999997663
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 476 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 2e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-09 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 2e-14
Identities = 41/317 (12%), Positives = 95/317 (29%), Gaps = 26/317 (8%)
Query: 49 PSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVG----ASQHFL 104
DLG+ + G S + G + + L G++ A +G A+
Sbjct: 61 RGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIA 120
Query: 105 HVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAG 164
+ + + G+ + P + + RG + + +GG +L +
Sbjct: 121 VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 180
Query: 165 HQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTS 224
W A + A ++L+A + D + +++ + N
Sbjct: 181 W----FNDWHAALYMPAFCAILVALFAFAMMRDTPQSC---GLPPIEEYKNDYPDDYNEK 233
Query: 225 VSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAMVFFTMWF-----ELIGFDHSST 279
+ + V+ I + + L W E+ F +
Sbjct: 234 AEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRY---GILDWSPTYLKEVKHFALDKS 290
Query: 280 AALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSV 339
+ L+ G+ L G ++D++ + + F + I +
Sbjct: 291 SWAYFLYEYAGIPGTLLCGWMSDKV---FRGNRGATGVFFMTLVTI----ATIVYWMNPA 343
Query: 340 SNYYTYAVTLVLMGLTI 356
N + ++++G I
Sbjct: 344 GNPTVDMICMIVIGFLI 360
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 2e-09
Identities = 60/515 (11%), Positives = 126/515 (24%), Gaps = 185/515 (35%)
Query: 17 LILINLAAIMERAD----ENLLPSVY--KEVSEAFNAGPSDLG-YLTFI------RNFVQ 63
++ + A ++ D +++ S+ +E+ + + G F VQ
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 64 GLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFL--------HVGMWRAVNGF 115
+ VL INY + S Q + ++ F
Sbjct: 81 KF---VEEVLRINYK-----------FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 116 G-LAIVIP--------ALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLA------- 159
+ AL + + G + G G +A
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKN-----------VLIDG-VLGSGKTWVALDVCLSY 174
Query: 160 ---TIMAGHQFW---GVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFD 213
M FW C + +VL L++ +DP + + H +
Sbjct: 175 KVQCKMDFKIFWLNLK----NCN----SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 214 RDELVEKGNTSVSS------------VWLESWMATKAVIKVPTF----QIIVL---QGIV 254
+ + + S V F +I++ + +
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQ------NAKAWNA--FNLSCKILLTTRFKQVT 278
Query: 255 GSLPWTAMVFFTMWFELIGFDHSSTAALLSLFAIGCAVG--------------SFLGGVV 300
L ++ + +LL + + C S + +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 301 ADRIS--QAYPHSG--------------------RVMCAQFSAFM---GIPFS-----WF 330
D ++ + H R M + S F IP WF
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 331 -LLTAIPQSV-------------SNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKH 376
++ + V T + + + + N A H
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTIS----IPSIYLELKVKLEN-------EYALH 446
Query: 377 RTMI--YAFDRAFEGSFSSFAAPLVGILSEKMFGY 409
R+++ Y + F+ ++ + Y
Sbjct: 447 RSIVDHYNIPKTFDSD---------DLIPPYLDQY 472
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 476 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.97 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.55 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.53 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.44 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.4 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.29 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.25 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.24 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-42 Score=332.52 Aligned_cols=376 Identities=13% Similarity=0.074 Sum_probs=292.9
Q ss_pred chHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHH
Q 011831 12 GISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWA 91 (476)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~ 91 (476)
.+++.+..+++..+...++...+.+.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||+++.++.++.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHH
Confidence 4567788888899999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh----hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhccc
Q 011831 92 FSTAAVGA----SQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQF 167 (476)
Q Consensus 92 ~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~ 167 (476)
++.+++++ +++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.+++|.+++.+.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-- 181 (451)
T 1pw4_A 104 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW-- 181 (451)
T ss_dssp HHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH--
T ss_pred HHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 99999999 999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCCc-hhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHH
Q 011831 168 WGVPG-WRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQ 246 (476)
Q Consensus 168 ~~~~~-wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (476)
.+ ||+.|++.++++++..++.++..||++......++++.+.+.+... +++..++...++ ...++.+++|.++
T Consensus 182 ---~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~ 255 (451)
T 1pw4_A 182 ---FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDY-NEKAEQELTAKQ--IFMQYVLPNKLLW 255 (451)
T ss_dssp ---TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC--------------CCTH--HHHHHTSSCHHHH
T ss_pred ---hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccc-hhhhhccccccc--chHHHHHcCHHHH
Confidence 78 9999999999888877776666666544332221111111100000 000000111111 1134577888888
Q ss_pred HHHHHHHhhhhhh-hHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhh--ccccCCCcchhHhHHHHH
Q 011831 247 IIVLQGIVGSLPW-TAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRI--SQAYPHSGRVMCAQFSAF 322 (476)
Q Consensus 247 ~~~~~~~~~~~~~-~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--~~~~~~~~~~~~~~~~~~ 322 (476)
...+..++....+ ....++|.|+++ +|+++.+++.+.+...++.+++.++.|++.||+ ++|+. . ..+..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~------~-~~~~~ 328 (451)
T 1pw4_A 256 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA------T-GVFFM 328 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH------H-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh------H-HHHHH
Confidence 7777666665544 444789999988 899999999999999999999999999999999 77752 1 11111
Q ss_pred hhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhh-hhhhhhHHHHH
Q 011831 323 MGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGS-FSSFAAPLVGI 401 (476)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-~~~~~~~~~g~ 401 (476)
+......+.+ ......+ ........++.|++.+...+ ...++..|..|+++|++++|+.+.+.++ +..++|.+.|.
T Consensus 329 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~ 405 (451)
T 1pw4_A 329 TLVTIATIVY-WMNPAGN-PTVDMICMIVIGFLIYGPVM-LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 405 (451)
T ss_dssp HHHHHHHHHT-TSCCTTC-HHHHHHHHHHHHHHHTHHHH-HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHhcccC-HHHHHHHHHHHHHHHhchHH-HHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 1111122 34455666677777766666 5678999999999999999999999999 99999999999
Q ss_pred HHhhh
Q 011831 402 LSEKM 406 (476)
Q Consensus 402 l~~~~ 406 (476)
+.|..
T Consensus 406 l~~~~ 410 (451)
T 1pw4_A 406 TVDFF 410 (451)
T ss_dssp HHHSS
T ss_pred HHHhc
Confidence 99984
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-39 Score=312.93 Aligned_cols=359 Identities=13% Similarity=0.114 Sum_probs=282.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHH
Q 011831 10 VLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILC 89 (476)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~ 89 (476)
+++++..+..+++..+..+++....++.+|.+.+++|.++.+.|++.+.+.+++.++++++|+++||+|||++++.+.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 34566777788888899999989999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH---HhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHh-hc
Q 011831 90 WAFSTAAV---GASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMA-GH 165 (476)
Q Consensus 90 ~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~-~~ 165 (476)
.+++.+++ +++++++.+++.|++.|++.+...+...++++|++|+|+|++++++.+.+.++|.+++|.+++.+. +.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999 888999999999999999999999999999999999999999999999999999999999999998 54
Q ss_pred ccCCCCc-------------------------hhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhh
Q 011831 166 QFWGVPG-------------------------WRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEK 220 (476)
Q Consensus 166 ~~~~~~~-------------------------wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (476)
.+ ||+.|++.+++.++..++.++.. .|+.+.+++ +++++
T Consensus 181 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~-~~~~~--------- 244 (438)
T 3o7q_A 181 -----VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTK-FPALQSDNH-SDAKQ--------- 244 (438)
T ss_dssp -----SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCTTTCC-CCSST---------
T ss_pred -----cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHc-CCccccccc-ccccc---------
Confidence 33 99999888877766665554432 222111110 00000
Q ss_pred cCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhhhhh-HHHHHHHH-HHH-hCCChhHHHHHHHHHHhhhhhhhchh
Q 011831 221 GNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWT-AMVFFTMW-FEL-IGFDHSSTAALLSLFAIGCAVGSFLG 297 (476)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~ 297 (476)
++..+..++++|+|.++...+..++....+. ...++|.| +++ +|+++.+++...+...++.+++.++.
T Consensus 245 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 315 (438)
T 3o7q_A 245 ---------GSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTG 315 (438)
T ss_dssp ---------TSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------cchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 1123445567888888887777666555444 44889999 888 69999999999999999999999999
Q ss_pred hhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccch
Q 011831 298 GVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHR 377 (476)
Q Consensus 298 g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~ 377 (476)
+++.||+++|+. ...+..+........ . ..++.+. ....++.|++.+...+ ...++..|.+|++ +
T Consensus 316 g~l~~r~~~~~~-------~~~~~~~~~~~~~~~-~---~~~~~~~--~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~-~ 380 (438)
T 3o7q_A 316 TWLISRFAPHKV-------LAAYALIAMALCLIS-A---FAGGHVG--LIALTLCSAFMSIQYP-TIFSLGIKNLGQD-T 380 (438)
T ss_dssp HHHHHHSCHHHH-------HHHHHHHHHHHHHHH-H---HCCHHHH--HHHHHHHHHHHTTHHH-HHHHHHHSSCGGG-H
T ss_pred HHHHHHhcchHH-------HHHHHHHHHHHHHHH-H---HcCCcHH--HHHHHHHHHHHHHHHH-HHHHHHHhhcccc-c
Confidence 999999999873 122222222111111 1 1222222 2344667777776666 6788888989865 8
Q ss_pred hhHHHHHHhhhhhhhhhhhHHHHHHHhhhhcC
Q 011831 378 TMIYAFDRAFEGSFSSFAAPLVGILSEKMFGY 409 (476)
Q Consensus 378 g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~ 409 (476)
+++.++.. ...+++.++|.+.|++.|..+++
T Consensus 381 ~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~ 411 (438)
T 3o7q_A 381 KYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNI 411 (438)
T ss_dssp HHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSS
T ss_pred cchhhHHH-HHHHHHHHHHHHHHHHHHHhcch
Confidence 89999887 67899999999999999997645
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=311.74 Aligned_cols=388 Identities=12% Similarity=0.076 Sum_probs=274.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCC--------CCchhHHHHHHHHHHHhhhhhhhHhhhhcCCch
Q 011831 10 VLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAG--------PSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPA 81 (476)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s--------~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~ 81 (476)
+++.+.+....+++.++.++|...++..+|.+.++++.+ .++.|++.+.+.+|..++++++|+++||+|||+
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~ 86 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD 86 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 344566666677888999999999999999999987532 235789999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHH------------------hhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHH
Q 011831 82 VLTIGILCWAFSTAAVG------------------ASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGL 143 (476)
Q Consensus 82 ~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 143 (476)
++.++.+++.+++++++ +++|+++++++|+++|++.|...+....+++|+.|+++|++..++
T Consensus 87 ~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~ 166 (491)
T 4gc0_A 87 SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSF 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHh
Confidence 99999999999999998 478999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhHHHHHHHHhhccc---CCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhh
Q 011831 144 LSLVGTMGGIGGGVLATIMAGHQF---WGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEK 220 (476)
Q Consensus 144 ~~~~~~lG~~~g~~~~~~l~~~~~---~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (476)
.+.+..+|.++++.++..+..... ....+||+.+.+..+..++..+..++.+|+|++...++++++++...++...+
T Consensus 167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~ 246 (491)
T 4gc0_A 167 NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGN 246 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCC
Confidence 999999999999999988775422 22357999999988888888777777777777765554333332222111111
Q ss_pred cCC-----ccchhHHHHHH--hhhhhccchhHHHHHHH-HHhhhhhhhHH-HHHHHHHHHhCCChhHHHHHHHHHHhhhh
Q 011831 221 GNT-----SVSSVWLESWM--ATKAVIKVPTFQIIVLQ-GIVGSLPWTAM-VFFTMWFELIGFDHSSTAALLSLFAIGCA 291 (476)
Q Consensus 221 ~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~g~s~~~~g~~~~~~~~~~~ 291 (476)
+.. +.+...++..+ .....++.+........ .+.....+... .|.|.+.++.+.+..+........++..+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (491)
T 4gc0_A 247 TLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINL 326 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHH
Confidence 100 00000000011 11122233333333332 22333333333 56777777788888888888888899999
Q ss_pred hhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcc
Q 011831 292 VGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEV 371 (476)
Q Consensus 292 ~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 371 (476)
++.++.+++.||+|||+.. .............+.......... +. .....++...+.+....|+.+.+.+|+
T Consensus 327 ~~~~~~~~l~dr~Grr~~~------~~~~~~~~~~~~~l~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~E~ 398 (491)
T 4gc0_A 327 TFTVLAIMTVDKFGRKPLQ------IIGALGMAIGMFSLGTAFYTQAPG-IV-ALLSMLFYVAAFAMSWGPVCWVLLSEI 398 (491)
T ss_dssp HHHHHHHHHHHHHCSHHHH------HHHHHHHHHHHHHHHHHHHTTCCH-HH-HHHHHHHHHHHHHTTTTHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhcCcchh------ccchHHHHHHHHHHHHHHhcccch-HH-HHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 9999999999999999732 111111111111111111222222 22 222333333333333333567899999
Q ss_pred cCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhh
Q 011831 372 VPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEK 405 (476)
Q Consensus 372 ~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 405 (476)
+|++.|+++.|+.+.++++++.+++.+.+.+.+.
T Consensus 399 fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~ 432 (491)
T 4gc0_A 399 FPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKN 432 (491)
T ss_dssp SCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHH
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998887665
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=292.40 Aligned_cols=347 Identities=13% Similarity=0.142 Sum_probs=277.0
Q ss_pred HHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHH
Q 011831 18 ILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAV 97 (476)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~ 97 (476)
..+++..+...++...+.+.+|.+.+++|.++++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 45667778888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHH
Q 011831 98 GASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAF 177 (476)
Q Consensus 98 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f 177 (476)
+++++++.+++.|++.|++.+...+...+++.|++|+|+|++++++.+...++|..++|.+++.+.+. .+||+.|
T Consensus 83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~~~~~~~ 157 (375)
T 2gfp_A 83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM-----WNWRACY 157 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH-----HHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-----ccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999886 7999999
Q ss_pred HHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhh
Q 011831 178 ILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSL 257 (476)
Q Consensus 178 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (476)
++.+++.++..+...+..||+++..+++ + +..++.++.+|+|.++...+..+....
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (375)
T 2gfp_A 158 LFLLVLCAGVTFSMARWMPETRPVDAPR---T---------------------RLLTSYKTLFGNSGFNCYLLMLIGGLA 213 (375)
T ss_dssp HHHHHHHHHHHCCCCCSSCCCSTTTCCC---C---------------------CTTTCSTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCcccCCCCccc---c---------------------cHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 9999888777665555555543321110 0 001122345566777766666555554
Q ss_pred hh-hHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHH-HHhhhhHHHhhhhc
Q 011831 258 PW-TAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFS-AFMGIPFSWFLLTA 334 (476)
Q Consensus 258 ~~-~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 334 (476)
.+ ....+.|.|+++ +|+++.+++...+...++.+++.++.+++.||.+++. ...... ...+... ....
T Consensus 214 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~------~~~~~~~~~~~~~~---~~~~ 284 (375)
T 2gfp_A 214 GIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM------WQSVICCLLAGLLM---WIPD 284 (375)
T ss_dssp HHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH------HHHHHHHHHTSSSS---SHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH---HHHh
Confidence 43 334778888887 8999999999999999999999999999999998732 111111 1111110 0000
Q ss_pred cccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhh
Q 011831 335 IPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEK 405 (476)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 405 (476)
. ......+...+..++.|++.+...+ ...++..|..| ++|+++.|+.+...+++..++|.+.|.+.+.
T Consensus 285 ~-~~~~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 352 (375)
T 2gfp_A 285 W-FGVMNVWTLLVPAALFFFGAGMLFP-LATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT 352 (375)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH
T ss_pred h-hccccHHHHHHHHHHHHHHHHHhhH-HHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0 0111233344566777888887777 78899999998 8999999999999999999999999999876
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=291.38 Aligned_cols=382 Identities=10% Similarity=0.003 Sum_probs=258.3
Q ss_pred HHHHHHHHHHHHHHHhccchhh-HHHHHHh-----cCCCCCchhHHHHHHHHHHHhhhhhhhHhhhh-cCCchhHHHHHH
Q 011831 16 SLILINLAAIMERADENLLPSV-YKEVSEA-----FNAGPSDLGYLTFIRNFVQGLSSPLAGVLVIN-YDRPAVLTIGIL 88 (476)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~-----~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~~~~~~~ 88 (476)
.+..+++..+...+......+. .+.+.++ +|.+..+.+++.+.+.++..++++++|+++|| +|||+++..+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~ 93 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGV 93 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 3444445555555555444333 3445555 99999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCc--chhhHHHHHhhhhhhhhhHHHHHHHHhhcc
Q 011831 89 CWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGV--RGAGFGLLSLVGTMGGIGGGVLATIMAGHQ 166 (476)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~ 166 (476)
+.+++.+++++++|++.+++.|+++|++.+...+...++++|++|+++ |++++++++.+.++|..++|.+++.+.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~- 172 (491)
T 4aps_A 94 LIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA- 172 (491)
T ss_dssp HHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 999999999999999999999999999999999999999999999988 77788889999999999999999999987
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhh-------------------hcCCccch
Q 011831 167 FWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVE-------------------KGNTSVSS 227 (476)
Q Consensus 167 ~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~ 227 (476)
.+||+.|++.++..++..++.++..++...+..+..+++.+.+..+... .+..+...
T Consensus 173 ----~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 248 (491)
T 4aps_A 173 ----AGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPA 248 (491)
T ss_dssp ----SCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTH
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCccccc
Confidence 8999999998887766665555443332222111111111100000000 00000000
Q ss_pred -------------------hHHHHHHhhhhhccchhHHHHHHHHHhhhhhhh-HHHHHHHHHHH-hCCChhHHHHHHHHH
Q 011831 228 -------------------VWLESWMATKAVIKVPTFQIIVLQGIVGSLPWT-AMVFFTMWFEL-IGFDHSSTAALLSLF 286 (476)
Q Consensus 228 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~g~s~~~~g~~~~~~ 286 (476)
.+++.....++..+....+...+.....+..+. ...++|.|.++ .+.+..+.+......
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (491)
T 4aps_A 249 YINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLN 328 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHH
T ss_pred chhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccc
Confidence 000000000111111223333333333333333 33678888887 777767778888888
Q ss_pred HhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhcc----ccCcchHHHHHHHHHHHHHHHHhhhcc
Q 011831 287 AIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAI----PQSVSNYYTYAVTLVLMGLTISWNATA 362 (476)
Q Consensus 287 ~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~ 362 (476)
.+..+++.++.+++.||++||+... ......+..+............ ...+..........++.|++.+...+
T Consensus 329 ~~~~~~~~~~~~~l~~r~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~- 405 (491)
T 4aps_A 329 PLFIMLYTPFFAWLWTAWKKNQPSS--PTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISP- 405 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC---C--HHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTT-
T ss_pred hHHHHHHHHHHHHHHHHHhccCCCc--hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhH-
Confidence 8999999999999999999986432 1111111111111111111100 01112234455667778888877666
Q ss_pred cccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhh
Q 011831 363 ANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEK 405 (476)
Q Consensus 363 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 405 (476)
...+++.|..|++.|+++.|+.+...+++..++|.+.+.+.+.
T Consensus 406 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~ 448 (491)
T 4aps_A 406 VGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK 448 (491)
T ss_dssp HHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6788999999999999999999999999999999999888765
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-31 Score=256.22 Aligned_cols=348 Identities=13% Similarity=0.068 Sum_probs=224.6
Q ss_pred HHHHHHHhccchhhHHH-HHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHH---HHHHh
Q 011831 24 AIMERADENLLPSVYKE-VSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFST---AAVGA 99 (476)
Q Consensus 24 ~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~---~~~~~ 99 (476)
.+..........+.+|. +++++|.++.+.|++.+.+.+++.++++++|+++||+|||+++.++..+++++. ...++
T Consensus 16 ~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~ 95 (417)
T 2cfq_A 16 FFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIF 95 (417)
T ss_dssp HHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455566666 556699999999999999999999999999999999999999999888776532 22233
Q ss_pred hhhHH-HHHHHHHHHHhhhhhhhhHHHHHHhhhcCC--CcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHH
Q 011831 100 SQHFL-HVGMWRAVNGFGLAIVIPALQSFIADSYKD--GVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCA 176 (476)
Q Consensus 100 ~~~~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~ 176 (476)
++... .+...+.+.|++.+...+.....+.++.++ ++|+...+......++|..++|.+++++.+ .+||+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~------~~~~~~ 169 (417)
T 2cfq_A 96 GPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT------INNQFV 169 (417)
T ss_dssp HHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH------HCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH------hchhHH
Confidence 33221 234556666666555554444445554433 456778888888999999999999999987 479999
Q ss_pred HHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhh
Q 011831 177 FILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGS 256 (476)
Q Consensus 177 f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (476)
|++.++..++..+..++.+||+++..+ +++++. +++ ++.. .++.++++++|.++...+..+...
T Consensus 170 f~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 233 (417)
T 2cfq_A 170 FWLGSGCALILAVLLFFAKTDAPSSAT---VANAVG-------ANH--SAFS----LKLALELFRQPKLWFLSLYVIGVS 233 (417)
T ss_dssp HTTTTTTTTTHHHHSCSSCCCCSCSSC---SSSSSS-------SCC--CCCC----HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccccccc---cccccc-------ccc--cccc----HHHHHHHhcCCchhhHHHHHHHHH
Confidence 998877755544444444444432110 001000 000 0001 123345677777776655544333
Q ss_pred hhhhHH-HHHHHHHHH-hC---CChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhh
Q 011831 257 LPWTAM-VFFTMWFEL-IG---FDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFL 331 (476)
Q Consensus 257 ~~~~~~-~~~~~~~~~-~g---~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (476)
..+... +++|.|+++ ++ .+....+...+...++.+++.++.+++.||+++|+. . ..+..+... .
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~------l-~~~~~~~~~----~ 302 (417)
T 2cfq_A 234 CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA------L-LLAGTIMSV----R 302 (417)
T ss_dssp HHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH------H-HHHHHHHHH----H
T ss_pred HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH------H-HHHHHHHHH----H
Confidence 333333 567888766 33 234456777778888889999999999999999873 1 111111111 1
Q ss_pred hhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHH-HhhhhhhhhhhhHHHHHHHhhh
Q 011831 332 LTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFD-RAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~-~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
+......++. ..+.+...+.+++.+...+ ....++.|.+|++.||++.++. +...++++.++|.+.|++.|..
T Consensus 303 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~ 376 (417)
T 2cfq_A 303 IIGSSFATSA-LEVVILKTLHMFEVPFLLV-GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI 376 (417)
T ss_dssp HHHHTTCCSH-HHHHHHTTHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS
T ss_pred HHHHHHhccH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc
Confidence 1111112222 2233444445555544444 4578999999999999999995 8888899999999999999874
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-30 Score=253.95 Aligned_cols=376 Identities=10% Similarity=-0.023 Sum_probs=231.8
Q ss_pred HHHHHHHHHHHhccchhhH-HHHHHhcC------CCCCchhHHHHHHHHHHHhhhhhhhHhhhhc-CCchhHHHHHHHHH
Q 011831 20 INLAAIMERADENLLPSVY-KEVSEAFN------AGPSDLGYLTFIRNFVQGLSSPLAGVLVINY-DRPAVLTIGILCWA 91 (476)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~-~~i~~~~~------~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~~~~~~~~~~ 91 (476)
+.+..++..+......+.+ +.+.+++| .+..+.|++.+.+.++..++.+++|+++||+ |||+++..+.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~ 96 (524)
T 2xut_A 17 IIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYC 96 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3444455555544444444 45677899 9999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhh-hHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHH---HHhhhhhhhhhHHHHHHHHhhccc
Q 011831 92 FSTAAVGASQ-HFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGL---LSLVGTMGGIGGGVLATIMAGHQF 167 (476)
Q Consensus 92 ~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~lG~~~g~~~~~~l~~~~~ 167 (476)
++.+++++++ +++.+++.|++.|++.+...+...+++.|++|+++|+++.+. .+...++|.+++|.+++.+.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-- 174 (524)
T 2xut_A 97 VGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN-- 174 (524)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT--
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 9999999999 999999999999999999999999999999999999877666 9999999999999999999887
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccC-CCC-CCChhhHhhhcCCccc-------------------
Q 011831 168 WGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHG-TGE-NFDRDELVEKGNTSVS------------------- 226 (476)
Q Consensus 168 ~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~------------------- 226 (476)
.+||+.|++.+++.++..++.++..++.++...+.++ .+. +......+......+.
T Consensus 175 ---~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (524)
T 2xut_A 175 ---FGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVN 251 (524)
T ss_dssp ---SCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGG
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcc
Confidence 8999999999888766655554433322111111000 000 0000000000000000
Q ss_pred --h------------hHHHHH--Hhh------------hhhccchhHHHHHHHHHhhhh---hhhH-HHHHHHHHHHhCC
Q 011831 227 --S------------VWLESW--MAT------------KAVIKVPTFQIIVLQGIVGSL---PWTA-MVFFTMWFELIGF 274 (476)
Q Consensus 227 --~------------~~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~g~ 274 (476)
. ...+.. .++ +...+.+.............. .+.. ...++.+..+.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (524)
T 2xut_A 252 IPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVK 331 (524)
T ss_dssp TTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCC
T ss_pred cchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCC
Confidence 0 000000 000 000111222222211111111 1111 1233444443333
Q ss_pred Ch-hHHHHHHHHHHhhhhhhhchhhhhh----hhhccccCCCcchhHhHHHHHhhhhHHHhhhhccc-----cCcchHHH
Q 011831 275 DH-SSTAALLSLFAIGCAVGSFLGGVVA----DRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIP-----QSVSNYYT 344 (476)
Q Consensus 275 s~-~~~g~~~~~~~~~~~~~~~~~g~l~----dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 344 (476)
+. ...+.+.....++.++...+.+++. ||.++|... ......+..+..... +...... ........
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 407 (524)
T 2xut_A 332 PQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTA---LRKMGAGIAITGLSW-IVVGTIQLMMDGGSALSIFW 407 (524)
T ss_dssp CSSSCHHHHHTTSGGGHHHHGGGTTTC------------CC---HHHHHTHHHHHHHHH-HTTTTTTTTTTTTCCCCSHH
T ss_pred CeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCCh---HHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCcCHHH
Confidence 22 2355555555566666666666654 443332211 111122222211111 1111111 01112233
Q ss_pred HHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhh
Q 011831 345 YAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEK 405 (476)
Q Consensus 345 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 405 (476)
..+..++.|++.+...+ ...+++.|..|++.||+++|+.+...++|+.++|.+.|.+.+.
T Consensus 408 ~~~~~~l~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~ 467 (524)
T 2xut_A 408 QILPYALLTFGEVLVSA-TGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP 467 (524)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44567778888777777 7788999999999999999999999999999999999998874
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-14 Score=138.53 Aligned_cols=176 Identities=13% Similarity=0.121 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHh-cCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhc--CCchhHHHHHHHHH
Q 011831 15 LSLILINLAAIMERADENLLPSVYKEVSEA-FNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINY--DRPAVLTIGILCWA 91 (476)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~--Grr~~~~~~~~~~~ 91 (476)
+.+..+.+..++............|.+.++ +|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 344455555566666656666777877777 899999999999999999999999999999999 99999888887776
Q ss_pred -HHHHHHHhh--hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhh-hhhhHHHHHHHHhhccc
Q 011831 92 -FSTAAVGAS--QHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTM-GGIGGGVLATIMAGHQF 167 (476)
Q Consensus 92 -~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~l-G~~~g~~~~~~l~~~~~ 167 (476)
++.++..+. .+.+.+.+..++.|++.+...+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.+.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~-- 409 (451)
T 1pw4_A 332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF-- 409 (451)
T ss_dssp HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 666666665 36777888889999999999999999999999999999999999999999 999999999999987
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhheee
Q 011831 168 WGVPGWRCAFILMATLSVLIAFLVLVFV 195 (476)
Q Consensus 168 ~~~~~wr~~f~i~~~~~~~~~~~~~~~~ 195 (476)
.||+..|++.+++.++..++.++..
T Consensus 410 ---~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 410 ---FGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp ---SCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999888877776666544
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=4.7e-14 Score=135.18 Aligned_cols=149 Identities=11% Similarity=0.183 Sum_probs=127.7
Q ss_pred CCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 011831 49 PSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFI 128 (476)
Q Consensus 49 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 128 (476)
..+.+++.+...++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888888899999999999999999999999999888888888888888888888888888877778888999
Q ss_pred hhhcCCCcchhhHHH-HHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCC
Q 011831 129 ADSYKDGVRGAGFGL-LSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKA 202 (476)
Q Consensus 129 ~~~~~~~~r~~~~~~-~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~ 202 (476)
+|.+|++.|+++.++ ++....+|..++|.+++.+.+. .|++..|.+.+++.++..++.++..+++++.+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~-----~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-----IGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH-----SHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh-----cCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 999999999999999 5888899999999999999887 78999999999888877777666666544433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.3e-13 Score=130.32 Aligned_cols=173 Identities=13% Similarity=0.102 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHhccchhhHHHHHHh-cCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHH-----HHHHHHHHH
Q 011831 20 INLAAIMERADENLLPSVYKEVSEA-FNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLT-----IGILCWAFS 93 (476)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~-----~~~~~~~~~ 93 (476)
+.+..+............+|.+.++ ++.+..+.+++.+...++..++.++.|++.||+|||+... .+.++.+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~ 367 (491)
T 4aps_A 288 LFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLS 367 (491)
T ss_dssp HHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence 3333444444444555556655554 6777688899999999999999999999999999987655 777777777
Q ss_pred HHHHHhhh---------hHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhh
Q 011831 94 TAAVGASQ---------HFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAG 164 (476)
Q Consensus 94 ~~~~~~~~---------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~ 164 (476)
.++.++.. +.+.+.+.-++.|++.+...+....++.|.+|+++|++++|+.+....+|..+++.+.+.+.+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 368 FLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA 447 (491)
T ss_dssp HTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77766654 677788888999999999999999999999999999999999999999999999999988876
Q ss_pred cccCCCCchhHHHHHHHHHHHHHHHHhheeeccC
Q 011831 165 HQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDP 198 (476)
Q Consensus 165 ~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~ 198 (476)
.++.+.|.+.++.+++..++.++..++.
T Consensus 448 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 448 ------KSEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp ------SSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred ------ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888877777776665543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=3.2e-12 Score=123.22 Aligned_cols=164 Identities=11% Similarity=-0.043 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHhccchhhHHHH-HHh-cCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHH
Q 011831 19 LINLAAIMERADENLLPSVYKEV-SEA-FNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAA 96 (476)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~i-~~~-~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~ 96 (476)
...+..++............|.+ .++ +|.+..+.+++.+...++..++.++.|+++||+|||+++..+.++..++.++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~ 341 (438)
T 3o7q_A 262 WAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLI 341 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 33444444444444455555655 555 5999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCc-hhH
Q 011831 97 VGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPG-WRC 175 (476)
Q Consensus 97 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~-wr~ 175 (476)
..+.++.+.++.. ++.|++.+...+...++..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+. .| ++.
T Consensus 342 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~-----~g~~~~ 413 (438)
T 3o7q_A 342 SAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDA-----AGNIPT 413 (438)
T ss_dssp HHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHH-----HTSSGG
T ss_pred HHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHH-----hcchHH
Confidence 8888887765555 8899999999999999999999765 888888877 5669999999999999987 67 999
Q ss_pred HHHHHHHHHHHHHHH
Q 011831 176 AFILMATLSVLIAFL 190 (476)
Q Consensus 176 ~f~i~~~~~~~~~~~ 190 (476)
.|++.++..++..+.
T Consensus 414 ~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 414 AELIPALCFAVIFIF 428 (438)
T ss_dssp GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 998876655444433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.4e-11 Score=118.94 Aligned_cols=171 Identities=15% Similarity=0.104 Sum_probs=125.8
Q ss_pred hccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhh-----hHHH
Q 011831 31 ENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQ-----HFLH 105 (476)
Q Consensus 31 ~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-----~~~~ 105 (476)
...+....+.+.++.+.+..+.........+...++.++.+++.||+|||+.++.+.....++.+..+... +...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 372 (491)
T 4gc0_A 293 INVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVA 372 (491)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred hhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHH
Confidence 33445556778888887777777777888888999999999999999999999999988888877665532 1222
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhccc-CCCCchhHHHHHHHHHH
Q 011831 106 VGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQF-WGVPGWRCAFILMATLS 184 (476)
Q Consensus 106 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~-~~~~~wr~~f~i~~~~~ 184 (476)
+...-+..+.......+....+.+|.+|.+.|++++|+......+|..+++.+...+.+... ....++.+.|++.++++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~ 452 (491)
T 4gc0_A 373 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG 452 (491)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 22222222222233456778899999999999999999999999999998888766543200 01145677888999999
Q ss_pred HHHHHHhheeeccCCCC
Q 011831 185 VLIAFLVLVFVVDPRKK 201 (476)
Q Consensus 185 ~~~~~~~~~~~~~~~~~ 201 (476)
++..+..+++.||++.+
T Consensus 453 ~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 453 VLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHheecCCCCC
Confidence 88888888888887654
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.1e-11 Score=114.93 Aligned_cols=131 Identities=6% Similarity=0.023 Sum_probs=101.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchH
Q 011831 263 VFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNY 342 (476)
Q Consensus 263 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (476)
..+|.+.+++|.++.+.+...+...++..++.++.|+++||+|||+... .+............ ..+ ..
T Consensus 21 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-------~~~~~~~~~~~~~~----~~~-~~ 88 (375)
T 2gfp_A 21 PAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVIL-------VGMSIFMLATLVAV----TTS-SL 88 (375)
T ss_dssp HHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCH-------HHHHHHHHHHHHHH----HHH-HH
T ss_pred hhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH-------HHHHHHHHHHHHHH----Hhc-cH
Confidence 5577777789999999999999999999999999999999999998532 11111111111111 112 23
Q ss_pred HHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 343 YTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 343 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
..+.+..++.|++.+...+ ...+++.|..|+++|++++++.+....++..++|.+.+.+.+..
T Consensus 89 ~~l~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 151 (375)
T 2gfp_A 89 TVLIAASAMQGMGTGVGGV-MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW 151 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHHHHHHHhhhh-hHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 4455677788888887777 77899999999999999999999999999999999999998763
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.3e-11 Score=120.15 Aligned_cols=149 Identities=13% Similarity=0.073 Sum_probs=107.1
Q ss_pred HHHHHHHHHhh-hhhhhHHHHHHHHHHH-hC------CChhHHHHHHHHHHhhhhhhhchhhhhhhhh-ccccCCCcchh
Q 011831 245 FQIIVLQGIVG-SLPWTAMVFFTMWFEL-IG------FDHSSTAALLSLFAIGCAVGSFLGGVVADRI-SQAYPHSGRVM 315 (476)
Q Consensus 245 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~g------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~~~~~~~ 315 (476)
++...+..++. ...+....+++.|+++ +| +++.+.+.+.+...++..++.++.|+++||+ |||+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~----- 88 (524)
T 2xut_A 14 IPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI----- 88 (524)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH-----
Confidence 33344433333 3345555788888876 88 9999999999999999999999999999999 998731
Q ss_pred HhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHH---HHhhhhhhh
Q 011831 316 CAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAF---DRAFEGSFS 392 (476)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~---~~~~~~~~~ 392 (476)
..+..+....... ....+.....+.+..++.|++.+...+ ...+++.|.+|+++|+++.+. .+...++|.
T Consensus 89 --~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~ 161 (524)
T 2xut_A 89 --LWLSLIYCVGHAF----LAIFEHSVQGFYTGLFLIALGSGGIKP-LVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS 161 (524)
T ss_dssp --HHHHHHHHHHHHH----HHHTSSCHHHHHHHHHHHHHHHHTTHH-HHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHH----HHHhcccHHHHHHHHHHHHHhccccch-hHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH
Confidence 1122211111111 111221234455667788988888777 778999999999999876666 889999999
Q ss_pred hhhhHHHHHHHhh
Q 011831 393 SFAAPLVGILSEK 405 (476)
Q Consensus 393 ~~~~~~~g~l~~~ 405 (476)
.++|.+.+.+.+.
T Consensus 162 ~~g~~~~~~l~~~ 174 (524)
T 2xut_A 162 FFASLSMPLLLKN 174 (524)
T ss_dssp HHHHHTSTHHHHT
T ss_pred HHHHHHHHHHhcc
Confidence 9999999999876
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 476 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 6e-10 | |
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 1e-04 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 2e-04 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 0.003 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 58.5 bits (140), Expect = 6e-10
Identities = 50/373 (13%), Positives = 109/373 (29%), Gaps = 21/373 (5%)
Query: 45 FNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAA----VGAS 100
DLG+ + G S + G + + L G++ A A+
Sbjct: 54 QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT 113
Query: 101 QHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLAT 160
+ + + G+ + P + + RG + + +GG +L
Sbjct: 114 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 173
Query: 161 IMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEK 220
+ W A + A ++L+A + D + +++ +
Sbjct: 174 LGMAWFND----WHAALYMPAFCAILVALFAFAMMRDTPQSCGLPP---IEEYKNDYPDD 226
Query: 221 GNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAMVFFTMWFELI--GFDHSS 278
N + + V+ I + + L ++ ++ + F
Sbjct: 227 YNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK 286
Query: 279 TAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQS 338
++ L+ G+ L G ++D++ R F + +
Sbjct: 287 SSWAYFLYEYAGIPGTLLCGWMSDKV-------FRGNRGATGVFFMTLVTIATIVYWMNP 339
Query: 339 VSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPL 398
N + ++++G I G E+ P K F F S AA
Sbjct: 340 AGNPTVDMICMIVIGFLIYG-PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA 398
Query: 399 VGILSEKMFGYDS 411
+ + FG+D
Sbjct: 399 IVGYTVDFFGWDG 411
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 42.0 bits (97), Expect = 1e-04
Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 4/123 (3%)
Query: 79 RPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRG 138
V + ++ A + + + + V GF + + + + G
Sbjct: 319 ATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAG 378
Query: 139 AGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDP 198
G L G +GG F GW F++M S+L L++V ++
Sbjct: 379 TAAGFTGLFGYLGGSVAASAIVGYTVDFF----GWDGGFMVMIGGSILAVILLIVVMIGE 434
Query: 199 RKK 201
+++
Sbjct: 435 KRR 437
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 41.3 bits (95), Expect = 2e-04
Identities = 39/369 (10%), Positives = 88/369 (23%), Gaps = 24/369 (6%)
Query: 41 VSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGAS 100
+ + + SD G + + L PL G+L L I A
Sbjct: 34 LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF 93
Query: 101 QHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLAT 160
+ V I + + A + + + G G A
Sbjct: 94 IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWAL 153
Query: 161 IMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEK 220
+ + F L + ++++A L+ D +
Sbjct: 154 GASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAP-----------SSATVANAVG 202
Query: 221 GNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAMVFFTMWFELIGFDHSSTA 280
N S S+ L + + + + +I + FFT +F
Sbjct: 203 ANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFG 262
Query: 281 ALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVS 340
+ ++ + A F ++ +A + + +
Sbjct: 263 YVTTMGELLNASIMFFAPLI------------INRIGGKNALLLAGTIMSVRIIGSSFAT 310
Query: 341 NYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVG 400
+ + L + + + IY F + ++
Sbjct: 311 SALEVVILKTLHMFEVPFLLVGCF-KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA 369
Query: 401 ILSEKMFGY 409
+ G+
Sbjct: 370 GNMYESIGF 378
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 37.4 bits (85), Expect = 0.003
Identities = 15/200 (7%), Positives = 62/200 (31%), Gaps = 4/200 (2%)
Query: 1 MYTFHRTRKVLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRN 60
+ + + + + + + + + G GY+T +
Sbjct: 210 LKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGE 269
Query: 61 FVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIV 120
+ A +++ L + + + L V + + ++ F + +
Sbjct: 270 LLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFL 329
Query: 121 IPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILM 180
+ +I ++ + + + +++AG + G++ A++++
Sbjct: 330 LVGCFKYITSQFEVRFSATIYLVCF---CFFKQLAMIFMSVLAG-NMYESIGFQGAYLVL 385
Query: 181 ATLSVLIAFLVLVFVVDPRK 200
+++ + + + P
Sbjct: 386 GLVALGFTLISVFTLSGPGP 405
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 476 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.97 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.54 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.45 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-41 Score=328.05 Aligned_cols=381 Identities=13% Similarity=0.075 Sum_probs=292.4
Q ss_pred cchHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHH
Q 011831 11 LGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCW 90 (476)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~ 90 (476)
+.+|.++..++++++..++++..++.+.|.+. |+|+|.+|+|++.+++.+++.++++++|+++||+|||+++..+.++.
T Consensus 21 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~ 99 (447)
T d1pw4a_ 21 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 99 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 44688888888899999999999999889876 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh----hHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcc
Q 011831 91 AFSTAAVGASQ----HFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQ 166 (476)
Q Consensus 91 ~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~ 166 (476)
+++.+++++++ +++.+++.|++.|++.+...+...++++|++|+++|++++++.+.+..+|..+++.+++.+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~- 178 (447)
T d1pw4a_ 100 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW- 178 (447)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH-
T ss_pred HHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhh-
Confidence 99999998864 6778999999999999999999999999999999999999999999999999999999887765
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHH
Q 011831 167 FWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQ 246 (476)
Q Consensus 167 ~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (476)
..+||+.|++.+++.++..++.+++++++++.....+.++.+.+..+...++.+.+. .......+..++++.++
T Consensus 179 ---~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 252 (447)
T d1pw4a_ 179 ---FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQEL---TAKQIFMQYVLPNKLLW 252 (447)
T ss_dssp ---TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC----------------CCTHHHHHHTSSCHHHH
T ss_pred ---hhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhcccccc---chhhHHHHHHHcCchHH
Confidence 258999999999999888888888888777655544333333222221111111111 11122344567788887
Q ss_pred HHHHHHHhhhhh-hhHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhh
Q 011831 247 IIVLQGIVGSLP-WTAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMG 324 (476)
Q Consensus 247 ~~~~~~~~~~~~-~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~ 324 (476)
......++.... +....+.|.|+++ .+++..+.+.......+..+++.++.|++.||.++++.. .... ....
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~--~~~~ 326 (447)
T d1pw4a_ 253 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG----ATGV--FFMT 326 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH----HHHH--HHHH
T ss_pred HHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccc----cccc--hhHH
Confidence 776665555544 4555889999987 899999999999999999999999999999999887531 1111 1111
Q ss_pred hhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhh-hhhHHHHHHH
Q 011831 325 IPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSS-FAAPLVGILS 403 (476)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~-~~~~~~g~l~ 403 (476)
...............+ .....+..++.|++.+...+ ....+..|.+|++.||++.|+.+.+.++++. ++|.+.|++.
T Consensus 327 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~ 404 (447)
T d1pw4a_ 327 LVTIATIVYWMNPAGN-PTVDMICMIVIGFLIYGPVM-LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 404 (447)
T ss_dssp HHHHHHHHTTSCCTTC-HHHHHHHHHHHHHHHTHHHH-HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111122222222222 34445566667777666665 6678899999999999999999999888655 6899999999
Q ss_pred hhhh
Q 011831 404 EKMF 407 (476)
Q Consensus 404 ~~~~ 407 (476)
|..+
T Consensus 405 ~~~g 408 (447)
T d1pw4a_ 405 DFFG 408 (447)
T ss_dssp HSSC
T ss_pred HHhC
Confidence 9853
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.5e-29 Score=240.34 Aligned_cols=356 Identities=14% Similarity=0.071 Sum_probs=236.4
Q ss_pred HHHHHHHHHHHHHHhccchhhHHH-HHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHH
Q 011831 17 LILINLAAIMERADENLLPSVYKE-VSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTA 95 (476)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~ 95 (476)
.+.+.+.++...+......+.+|. +.+++|+|++++|++.+++.+++.++++++|+++||+|||++++++..+..++..
T Consensus 9 ~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~ 88 (417)
T d1pv7a_ 9 FWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFA 88 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 344555566666666677777876 6677999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHH----HHHHHHHHhhhhhhhhHHHHHHhhhcCC--CcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCC
Q 011831 96 AVGASQHFLHV----GMWRAVNGFGLAIVIPALQSFIADSYKD--GVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWG 169 (476)
Q Consensus 96 ~~~~~~~~~~l----~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~ 169 (476)
+..+..+.... ++.+.+.+.+.+...........+..++ +++.+..+........+..+++.+++.+.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---- 164 (417)
T d1pv7a_ 89 PFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI---- 164 (417)
T ss_dssp HHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc----
Confidence 88887665543 4555666665555555554444444432 3456677888889999999999999999885
Q ss_pred CCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHH
Q 011831 170 VPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIV 249 (476)
Q Consensus 170 ~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (476)
+|+..+........+..++.++..++++....+.++++++ + ++...+ ..+...+++..+...
T Consensus 165 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~---~~~~~~----~~~~~~~~~~~~~~~ 226 (417)
T d1pv7a_ 165 --NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGAN---------H---SAFSLK----LALELFRQPKLWFLS 226 (417)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSC---------C---CCCCHH----HHHHHTTSSHHHHHH
T ss_pred --cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhh---------c---cccccc----ccccccccccccchh
Confidence 6777777766666666666666665554433332111100 0 000001 111122223333322
Q ss_pred HHHHhhhhhhhHH-HHHHHHH----HHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhh
Q 011831 250 LQGIVGSLPWTAM-VFFTMWF----ELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMG 324 (476)
Q Consensus 250 ~~~~~~~~~~~~~-~~~~~~~----~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~ 324 (476)
............. ...+.+. ++.+.+....+.......++..++..+.+++.||.++|+. ...+..+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~-------~~~~~~~~ 299 (417)
T d1pv7a_ 227 LYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA-------LLLAGTIM 299 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHH-------HHHHHHHH
T ss_pred hhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccc-------hhhhHHHH
Confidence 2222222222222 2222222 2244556677778888889999999999999999999873 11111111
Q ss_pred hhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHh-hhhhhhhhhhHHHHHHH
Q 011831 325 IPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRA-FEGSFSSFAAPLVGILS 403 (476)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~-~~~~~~~~~~~~~g~l~ 403 (476)
. +........++ .+...+..++.|++.+...+ ...+++.|.+|++.|+++.|+... ...++..++|.+.|++.
T Consensus 300 ~----~~~~~~~~~~~-~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~ 373 (417)
T d1pv7a_ 300 S----VRIIGSSFATS-ALEVVILKTLHMFEVPFLLV-GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY 373 (417)
T ss_dssp H----HHHHHHHTCCC-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred H----Hhhhccccccc-cchhhHHHHHHHHHHHHHHH-HHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11112222333 33355666777888877777 778999999999999999998654 56689999999999999
Q ss_pred hhhh
Q 011831 404 EKMF 407 (476)
Q Consensus 404 ~~~~ 407 (476)
|..+
T Consensus 374 ~~~g 377 (417)
T d1pv7a_ 374 ESIG 377 (417)
T ss_dssp HHHC
T ss_pred HHHC
Confidence 9853
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=4.8e-15 Score=139.05 Aligned_cols=150 Identities=12% Similarity=0.186 Sum_probs=135.2
Q ss_pred CCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHH
Q 011831 47 AGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQS 126 (476)
Q Consensus 47 ~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 126 (476)
.+....+...+...++..++..+.+++.||+|+|+.+..+.++.+++.++..+.++.+.+++..++.|++.+...+...+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 335 (417)
T d1pv7a_ 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 34456677788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCcchhhHHHH-HhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCC
Q 011831 127 FIADSYKDGVRGAGFGLL-SLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKK 201 (476)
Q Consensus 127 ~i~~~~~~~~r~~~~~~~-~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~ 201 (476)
++.|.+|+++|++..++. +....+|..++|.+.+++.+. .||+..|++.+++.++..++..+..+++++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~-----~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (417)
T d1pv7a_ 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-----IGFQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-----HCHHHHHHHHHHHHHHHHHHHHHHSCCSSCT
T ss_pred HHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 999999999999999985 567789999999999999998 8999999999999888888887777665543
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=1e-13 Score=131.76 Aligned_cols=138 Identities=15% Similarity=0.064 Sum_probs=101.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchH
Q 011831 263 VFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNY 342 (476)
Q Consensus 263 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (476)
.....++++.|+|+.+.|++.+...++..++.++.|+++||+|||+. ...+.++......+.........+ .
T Consensus 45 ~~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~ 116 (447)
T d1pw4a_ 45 ALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF-------LPAGLILAAAVMLFMGFVPWATSS-I 116 (447)
T ss_dssp HHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH-------HHHHHHHHHHHHHHHHHCHHHHSS-S
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH-------HHHHHHHHHHHHhhccccchhhhh-H
Confidence 34434567799999999999999999999999999999999999973 222222221111111111111112 2
Q ss_pred HHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhhhcC
Q 011831 343 YTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKMFGY 409 (476)
Q Consensus 343 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~ 409 (476)
..+.+..++.|++.+...+ ....++.|.+|+++|++++|+.+....+|..++|.+.+.+.+..++|
T Consensus 117 ~~~~~~~~~~g~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w 182 (447)
T d1pw4a_ 117 AVMFVLLFLCGWFQGMGWP-PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDW 182 (447)
T ss_dssp SHHHHHHHHHHHHHHHTHH-HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHhhhhhhh-HHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcc
Confidence 3355667778888777777 67889999999999999999999999999999999999988876665
|