Citrus Sinensis ID: 011839

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470------
Protein Sequence
MEDEKKKKRNKKKKNNKQTKTTTDDVAVGADPNHLINGQKDDVRSQASEPADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDAPLIGAPFRLVSFVAKYVSGADLVNKNASN
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHcccccHHHHccccccHHccccccHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHcccccccccccHHHcHHHHHHHHHHccccccccccccccccccHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccHHHcccccccccccccccHcccccccHccccEEEcccccHHHHHHHHccHHHccccHccccccccccccccHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
MEDEKKKKRnkkkknnkqtktttddvavgadpnhlingqkddvrsqasepadiqnvqvdadrhqsngaesaNLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSaigsdavtaltsdtepmsessdnMSSLNNRLETQGVvavkedrngingvhadppplvlssseaeysgeivqiplddkevqDLELQVVESYTDKvaavpltdapligapfRLVSFVAKYVSGadlvnknasn
Flexible Loop (DISEMBL)
medekkkkrnkkkknnkqtktttddvavgadpnHLINGQKDDVRSQASEPADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEadkdswtqmesvsketiaglsvdiTQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAglssaigsdavTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDAPLIGAPFRLVSFVAKYVSgadlvnknasn
Low Complexity Region (SEG)
MEDEkkkkrnkkkknnkqtktttDDVAVGADPNHLINGQKDDVRSQASEPADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVsslrsqlssdesKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDAPLIGAPFRLVSFVAKYVSGADLVNKNASN
Disordered region (IsUnstruct)
************************************************************************************************************************ECDLYK****************************************************I*******EFWL**************************************************TIAGLSVDITQLRMQVV************************************************IEAAGALIDKLITENIELVEKVNDLSVKLDR***************************************************************************GEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDAPLIGAPFRLVSFVAKYVSGADL*******
Disordered Region (DISOPRED)
***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LTDAPLIGAPFRLVSFVAKYVSGAD*VN*****
Disordered Region (DISEMBL)
*********************TTDDVAVGADPNHLINGQKDDVRSQASEPADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK****************************STQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTAL***************SLNNRLETQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDAPLIGAPFRLVSFVAKYVSGADLVNKNASN
Disordered Region (DISPRO)
MEDEKKKKRNKKKKNNKQTKTTTDDVAVGADPNHLINGQKDDVRSQASEPADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGV******************************GEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDAPLIGAPFRLVSFVAKYVSG**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
xxxxxxxxxxxxxxxxxxxxxTTDDVAVGADPNHLINGQKDDVRSQASEPADIQNVQVDADRHQSNGAESANxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEGGLEMNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxESVSKETIAGLSVDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDAPLIGAPFRLVSFVAKYVSGADLVNKNASN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	476
224087896	477	predicted protein [Populus trichocarpa]	0.901	0.899	0.496	1e-107
255575616	492	conserved hypothetical protein [Ricinus	0.901	0.871	0.491	1e-102
224139390	456	predicted protein [Populus trichocarpa]	0.810	0.846	0.495	1e-96
297741755	466	unnamed protein product [Vitis vinifera]	0.918	0.937	0.454	1e-84
356566804	651	PREDICTED: uncharacterized protein LOC10	0.842	0.615	0.436	6e-74
359481328	511	PREDICTED: uncharacterized protein LOC10	0.878	0.818	0.390	8e-61
79570413	482	ATP synthase D chain-related protein [Ar	0.773	0.763	0.373	2e-51
297823743	509	hypothetical protein ARALYDRAFT_345641 [	0.758	0.709	0.388	4e-51
356530165	639	PREDICTED: uncharacterized protein LOC10	0.756	0.563	0.342	2e-46
449439795	392	PREDICTED: uncharacterized protein LOC10	0.674	0.818	0.389	5e-43

>gi|224087896|ref|XP_002308260.1| predicted protein [Populus trichocarpa] gi|222854236|gb|EEE91783.1| predicted protein [Populus trichocarpa]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 237/477 (49%), Positives = 323/477 (67%), Gaps = 48/477 (10%)

Query: 20  KTTTDDVAVGADPNHLINGQK-----DDVRSQASEPADIQNVQVDADRH--QSNGAESAN 72
           K + DDV+V A  N+  NGQ      D+   + S   D+ + + D + H  + NGA   +
Sbjct: 25  KASEDDVSVAAATNNNSNGQNHGNVNDNQVIEVSSNGDVVDAE-DFNGHYDKPNGAAPHS 83

Query: 73  LAEAERQHLLQREAMAI------LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYK 126
            A  E    LQ E  ++       EET+K LR+E +SHIQKEATLE TV+QLQNE   + 
Sbjct: 84  AALQETIKHLQNETDSLTRTKDTFEETIKRLRDENDSHIQKEATLEETVKQLQNESASHT 143

Query: 127 EKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEK 186
           +K +A+LE+TI QL+  N+L +QKEAT E+TIKQL+ +ND H+Q+E  LE  I  LQSEK
Sbjct: 144 QK-EASLEDTINQLRSVNNLCIQKEATFEDTIKQLKTENDSHLQKEADLEKRIVQLQSEK 202

Query: 187 EFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLS 246
           +FWLQKEA   +K++ L+DE AAL    AS+ E+++LLE+DKDSWT  E+ +KETIA ++
Sbjct: 203 DFWLQKEAGFGEKLNHLQDEKAAL----ASIGEKIRLLESDKDSWTISENTTKETIARMN 258

Query: 247 VDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL-------SSDESKKLQHATSEQ 299
           +D+T+LRMQVVELE+SRN+L++EN+QLKE++S+L+ QL       S   + +L    +E+
Sbjct: 259 IDVTRLRMQVVELEDSRNSLVKENQQLKESISNLKLQLQNIDTSVSFANTSELGKLGAEK 318

Query: 300 KDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAV---TALT 356
           ++ ++QIEAA AL+DKLITEN +LVEKVN+L +KLD Q  AA  SSA G   +   + L 
Sbjct: 319 EELNSQIEAACALVDKLITENADLVEKVNELYIKLDHQGTAASFSSATGRGVIVRNSELA 378

Query: 357 SDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYSGEIVQ 416
           + T PM++S+ N+++L ++LE+               +  +P  +V  SSEA  SGEIVQ
Sbjct: 379 NGTHPMADSNANLTALGHKLES---------------LEVEPAVVVQYSSEA-GSGEIVQ 422

Query: 417 IPLDDKEVQDLELQVVESYTD-KVAAVPLTDAPLIGAPFRLVSFVAKYVSGADLVNK 472
           IPLDD EV DLE+Q  E  TD K  AVPLTDAPLIGAPFRL+SFVAKYVSG DLVN+
Sbjct: 423 IPLDDNEVPDLEMQAAE--TDYKSGAVPLTDAPLIGAPFRLISFVAKYVSGGDLVNR 477

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575616|ref|XP_002528708.1| conserved hypothetical protein [Ricinus communis] gi|223531880|gb|EEF33697.1| conserved hypothetical protein [Ricinus communis]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 242/492 (49%), Positives = 321/492 (65%), Gaps = 63/492 (12%)

Query: 18  QTKTTTDDVAVGADPNHLINGQKDDVRSQASEPADIQN------VQVDA-DRHQSNGAES 70
           Q+KTT DD       +H  NG   +  +Q ++ A+IQN        VD  DRHQ+ G E 
Sbjct: 22  QSKTTEDDAVFVGGVDHQ-NGASSNGNNQVTDLAEIQNGDVQNAANVDGFDRHQNTGTEI 80

Query: 71  ANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQ 130
           +   EAE+Q   QREA  I EET+K L+NE + HIQKEA L  ++++LQ E D+ + K Q
Sbjct: 81  SISVEAEKQQWFQREA--IFEETIKRLQNENDLHIQKEAILRKSIKELQEENDIQRRK-Q 137

Query: 131 ATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQRE------------------ 172
             LEET+++LQ  ND  +QKEATLEETIK+LRN ND  +Q+E                  
Sbjct: 138 VMLEETVKELQNANDSALQKEATLEETIKELRNTNDSALQKEVKLEKTIKELRSAKDSAL 197

Query: 173 ---GGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKD 229
               GL+  IA LQSE E +LQ +A LE+K+    +E+A+L +K ASLEE++K LE++KD
Sbjct: 198 QKEAGLKKKIAQLQSENELFLQTKAGLEEKLQLSLNENASLGLKEASLEEKIKQLESEKD 257

Query: 230 SWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES 289
           SWT  E+ +KETIA ++VD+T+LRMQVVELEESRN+LL+EN+QL EN+S L+ Q+ + E+
Sbjct: 258 SWTLAENTTKETIARMNVDVTRLRMQVVELEESRNSLLKENQQLMENISDLQLQVQNLET 317

Query: 290 KKLQHATS-EQK-------DFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAA 341
                +TS EQK       D  +QIEAA AL+DKLITEN ELVEKVN+L +KLD+QS  A
Sbjct: 318 NISSASTSCEQKKHALEGEDLESQIEAACALVDKLITENAELVEKVNELYIKLDQQSTTA 377

Query: 342 GLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNGINGVHADPPPL 401
             SS  G+  +T + +D+ P  +S +NMS + ++LE+   + V+          AD    
Sbjct: 378 TASS--GNAEITYI-ADSIP--QSDENMSVVVHKLES---LEVEHAAALPYAAEAD---- 425

Query: 402 VLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDAPLIGAPFRLVSFVA 461
                    SGEIVQIPLDD E++DLELQ VES  DK  AVP++DAPLIGAPFRL+SFVA
Sbjct: 426 ---------SGEIVQIPLDDNELRDLELQAVES--DKTEAVPISDAPLIGAPFRLISFVA 474

Query: 462 KYVSGADLVNKN 473
           KYVSGADLV+K+
Sbjct: 475 KYVSGADLVDKD 486

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139390|ref|XP_002323089.1| predicted protein [Populus trichocarpa] gi|222867719|gb|EEF04850.1| predicted protein [Populus trichocarpa]

 Score =  359 bits (922), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 220/444 (49%), Positives = 287/444 (64%), Gaps = 58/444 (13%)

Query: 45  SQASEPADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESH 104
           S   +  D+++     D+      +S+ LAEAE+Q  LQREA    EET+K L +E +SH
Sbjct: 59  SSNGDAVDVEDFNTHNDKPNGVAPQSSILAEAEKQWWLQREAT--FEETIKQLEDENDSH 116

Query: 105 IQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQ 164
           IQKE T E                      ETI+QLQ +ND  +QKEAT E+TIKQL+ +
Sbjct: 117 IQKEVTFE----------------------ETIKQLQDENDSHIQKEATFEDTIKQLKTE 154

Query: 165 NDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 224
           NDLH+Q+E GLEM I  LQ EK+FW  KEA LE+K++ L DE AAL +K ASLEE++  L
Sbjct: 155 NDLHMQKEAGLEMKIMQLQREKDFWFLKEAGLEEKLNLLLDEKAALGLKLASLEEKIGQL 214

Query: 225 EADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL 284
           +++KDSW   E+ +KE +  +++DIT LRMQVVELE SRN+L++EN+QLKE+VS L+ QL
Sbjct: 215 DSEKDSWAVSENTTKEIVGRMNIDITSLRMQVVELEYSRNSLVKENQQLKESVSDLKLQL 274

Query: 285 ---------SSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLD 335
                    SS  + +L    +E++D ++QIEAA AL+DKLITEN ELVEKVN+L +KLD
Sbjct: 275 QNVETQQSISSANTSELGKNDAEKEDLNSQIEAACALVDKLITENAELVEKVNELYIKLD 334

Query: 336 RQSVAAGLSSAIGSDAV---TALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNGIN 392
           +Q  AA LSS+ GSD +   + L + T PMSESS++   L +                  
Sbjct: 335 QQKAAASLSSSAGSDVILRNSELANGTPPMSESSESALGLKSE----------------- 377

Query: 393 GVHADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDAPLIGA 452
            + ADPP  VL  S    + EIVQIPLDD EV D+E+Q      DK + VPLTDAPLIGA
Sbjct: 378 SLDADPPAAVLPQSSEPDAEEIVQIPLDDNEVPDVEMQA----EDK-SGVPLTDAPLIGA 432

Query: 453 PFRLVSFVAKYVSGADLVNKNASN 476
           PFRL+SFVAKYVSGADLV+K+ SN
Sbjct: 433 PFRLISFVAKYVSGADLVSKDDSN 456

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741755|emb|CBI32887.3| unnamed protein product [Vitis vinifera]

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 227/500 (45%), Positives = 317/500 (63%), Gaps = 63/500 (12%)

Query: 1   MEDEKKKKRNKKKKNNKQTKTTTDDVAVGA-----DPNHL---INGQKDDVRSQASEPAD 52
           MEDEKKKK+NKKKKN +   +    V VG      D NHL    +G ++ +       AD
Sbjct: 1   MEDEKKKKKNKKKKNKQHKASEGPAVGVGEEIASLDENHLSTQTHGNQESI-------AD 53

Query: 53  IQN--VQ---VDADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQK 107
           +QN  VQ   VD + H +NG +S+ L EAE+Q  LQREA   L+E +K L N++E H QK
Sbjct: 54  VQNRDVQKENVDLNGHCANGTDSSILVEAEKQKWLQREAS--LQERIKQLENDKELHTQK 111

Query: 108 EATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL 167
           E+ L         E D                 ++Q    +++EATLEE IKQL+++NDL
Sbjct: 112 ESILA--------EAD-----------------KKQ---WLKREATLEERIKQLQDENDL 143

Query: 168 HIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEAD 227
           H+Q+E GLEM I  LQ+EK  W+QKEA LE KI QL DE++ L++K ASLEE+++  E +
Sbjct: 144 HMQKEAGLEMRIVQLQTEKHSWIQKEATLEGKIQQLLDENSTLSVKWASLEEKVEHQERE 203

Query: 228 KDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS- 286
           ++SW   E+ S+E I+ L+ +  +L+ QV+ELEE R N+LQEN+ LKE VSSL+ Q+   
Sbjct: 204 RNSWVLKENSSREIISSLNDENRKLQGQVMELEEFRINILQENQLLKEKVSSLQLQIKEL 263

Query: 287 DESKKLQHATSE-------QKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSV 339
           +ES    HA++E         D + Q EAA  LI+KL +EN +LVEKVN+L ++LD+  V
Sbjct: 264 EESVSSAHASTEITKHASKHVDLNPQTEAATVLIEKLTSENADLVEKVNELYIELDQLRV 323

Query: 340 AAGLSSAIGSD-AVTALTSD--TEPMSESSDNMSSLNNRLETQGVVAVKEDRNGINGVHA 396
           AAGLSSAIG D  + AL +    + MSE +DN S+ + R++    V + ++R   +    
Sbjct: 324 AAGLSSAIGLDKKIGALQNSNVADHMSEPTDNSSASSERMDPLEAVPMNDERISADIEDV 383

Query: 397 DPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDAPLIGAPFRL 456
           +   ++ +SSE + SGEIVQIPLD+ E ++LELQ  E+  D+   VP+TDAPLIGAPFR 
Sbjct: 384 EQTAVIPNSSETDDSGEIVQIPLDENEARELELQAAEN--DRNTTVPITDAPLIGAPFRF 441

Query: 457 VSFVAKYVSGADLVNKNASN 476
           +SFVAKYVSGADLV K+++N
Sbjct: 442 ISFVAKYVSGADLVGKSSTN 461

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566804|ref|XP_003551617.1| PREDICTED: uncharacterized protein LOC100796148 [Glycine max]

 Score =  284 bits (727), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 182/417 (43%), Positives = 261/417 (62%), Gaps = 16/417 (3%)

Query: 72  NLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQA 131
           NL E    H+ Q+E ++  +ET+K L+ E E HIQ+EA  + T++ L+ E D   +KV  
Sbjct: 236 NLKEKNDVHV-QKETLS--QETIKKLKEENEVHIQEEAISKETIKNLKEENDKLLQKV-V 291

Query: 132 TLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQ 191
           +LEE I  LQ  N+L+ QK  +LE  I  L N+     ++E GLE  IA LQSE    LQ
Sbjct: 292 SLEEVINNLQTDNELQTQKHESLERKINLLENELSSFSEKEVGLETRIAQLQSENNSLLQ 351

Query: 192 KEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQ 251
           KEA L ++ +QL +E A L++K  SLE+++ LLE+D +S  + E+ +KETI+ L+ +I  
Sbjct: 352 KEATLVERTNQLLNEKAVLSLKGESLEQKIYLLESDLNSLVKKENSTKETISNLNGNIAV 411

Query: 252 LRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT---------SEQKDF 302
           L+ QV ELEESRNNL  EN+QL+E VSSL+S + + E+      +         SE +D 
Sbjct: 412 LQAQVEELEESRNNLFLENQQLREKVSSLQSTVQNHENSNTSSCSWDASVKDLASENEDL 471

Query: 303 STQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTE-- 360
            ++IEAA  L++KL+ EN ELVEKV +L V+LD +S   G S    S+ +T     T   
Sbjct: 472 KSEIEAAFTLVEKLMAENAELVEKVTELCVELDHRSAEVGHSGVTESNGMTEFVKPTGVA 531

Query: 361 -PMSESSDNMSSLNNRLETQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYSGEIVQIPL 419
            P+ ES++  S  + +L +    +VK++ N  +  H        S   A+ +GEIVQIPL
Sbjct: 532 IPLPESAEYASVSSPKLNSLEETSVKDNGNSNDAKHVVGVTSNSSLVSADDAGEIVQIPL 591

Query: 420 DDKEVQDLELQVVESYTDKVAAVPLTDAPLIGAPFRLVSFVAKYVSGADLVNKNASN 476
           DD E+QD+ELQ  ++  +   AVP+TDAPLIGAPFRL+SFVA +VSGADLVN+++SN
Sbjct: 592 DDNEIQDIELQDAKNVENDADAVPITDAPLIGAPFRLISFVANFVSGADLVNQSSSN 648

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481328|ref|XP_002279159.2| PREDICTED: uncharacterized protein LOC100249907 [Vitis vinifera]

 Score =  241 bits (614), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 220/564 (39%), Positives = 300/564 (53%), Gaps = 146/564 (25%)

Query: 1   MEDEKKKKRNKKKKNNKQTKTTTDDVAVGA-----DPNHL---INGQKDDVRSQASEPAD 52
           MEDEKKKK+NKKKKN +   +    V VG      D NHL    +G ++ +       AD
Sbjct: 1   MEDEKKKKKNKKKKNKQHKASEGPAVGVGEEIASLDENHLSTQTHGNQESI-------AD 53

Query: 53  IQN--VQ---VDADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQK 107
           +QN  VQ   VD + H +NG +S+ L EAE+Q  LQREA   L+E +K L N++E H QK
Sbjct: 54  VQNRDVQKENVDLNGHCANGTDSSILVEAEKQKWLQREAS--LQERIKQLENDKELHTQK 111

Query: 108 EATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL 167
           E+ L         E D                 ++Q    +++EATLEE IKQL+++NDL
Sbjct: 112 ESILA--------EAD-----------------KKQ---WLKREATLEERIKQLQDENDL 143

Query: 168 HIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEAD 227
           H+Q+E GLEM I  LQ+EK  W+QKEA LE KI QL DE++ L++K              
Sbjct: 144 HMQKEAGLEMRIVQLQTEKHSWIQKEATLEGKIQQLLDENSTLSVK-------------- 189

Query: 228 KDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS- 286
              W      S+E I+ L+ +  +L+ QV+ELEE R N+LQEN+ LKE VSSL+ Q+   
Sbjct: 190 ---WNS----SREIISSLNDENRKLQGQVMELEEFRINILQENQLLKEKVSSLQLQIKEL 242

Query: 287 DESKKLQHATSE-------QKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSV 339
           +ES    HA++E         D + Q EAA  LI+KL +EN +LVEKVN+L ++LD+  V
Sbjct: 243 EESVSSAHASTEITKHASKHVDLNPQTEAATVLIEKLTSENADLVEKVNELYIELDQLRV 302

Query: 340 AAGLSSAIGSD-AVTALTSD--TEPMSESSDNMSSLNNRLETQGVVAVK----------E 386
           AAGLSSAIG D  + AL +    + MSE +DN S+ + R+E+   V +            
Sbjct: 303 AAGLSSAIGLDKKIGALQNSNVADHMSEPTDNSSASSERMESVEAVPIHGQSSQEAVPMH 362

Query: 387 DRNGINGVHADP-------PPLVLSSSEA-----EYSGEIVQI---------PLDDK--- 422
           D N    V           P L  SS EA     + S E V I         P++D+   
Sbjct: 363 DENSQEAVPIHDQRSLEAVPMLDESSQEAVPIHDQRSIEAVPINDKSPLEAVPMNDERIS 422

Query: 423 -EVQDLELQVV---ESYTD---KVAAVPL-----------------------TDAPLIGA 452
            +++D+E   V    S TD   ++  +PL                       TDAPLIGA
Sbjct: 423 ADIEDVEQTAVIPNSSETDDSGEIVQIPLDENEARELELQAAENDRNTTVPITDAPLIGA 482

Query: 453 PFRLVSFVAKYVSGADLVNKNASN 476
           PFR +SFVAKYVSGADLV K+++N
Sbjct: 483 PFRFISFVAKYVSGADLVGKSSTN 506

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79570413|ref|NP_181392.2| ATP synthase D chain-related protein [Arabidopsis thaliana] gi|51968994|dbj|BAD43189.1| hypothetical protein [Arabidopsis thaliana] gi|330254458|gb|AEC09552.1| ATP synthase D chain-related protein [Arabidopsis thaliana]

 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 149/399 (37%), Positives = 240/399 (60%), Gaps = 31/399 (7%)

Query: 75  EAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLE 134
           E E +  +Q+EA+  LEE + HL+ E E+H+  EA LEG +  L+ E + + +  +A LE
Sbjct: 113 ETENEAHIQKEAL--LEERLVHLKTENEAHVHNEALLEGKLLHLRTENEDHIQN-EALLE 169

Query: 135 ETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA 194
           E +  L+ +N+  +Q EA LEE +   R +N+ H Q E  LE  +   +++ +  L++ +
Sbjct: 170 EKLLHLRTENEAHIQNEALLEERLLHFRTENEAHKQNEEKLEERLVQYKNKNDMLLREMS 229

Query: 195 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRM 254
           + E ++ QL DE +    K ASLE++++ L+ D++S    E  S+E I+ L+ +I +LR 
Sbjct: 230 STEAQMRQLLDERSTFTQKEASLEKKVQQLQHDEESLVAEEKSSREMISSLNNEIARLRA 289

Query: 255 QVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALID 314
           QV ELE+S++NLL++N+ LKE +S+L+ Q  + +S       + +++ ++QIEAA  L++
Sbjct: 290 QVTELEKSKSNLLEQNQSLKETISNLQVQHENHDSNA---KGASEEELNSQIEAACTLVE 346

Query: 315 KLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNN 374
           KLITEN +LVEKVN+L +KL++   A+  S AI  +   +L  +  P+    D +  ++N
Sbjct: 347 KLITENADLVEKVNELCIKLNQSQHASPESLAIEVEKSESL--EEIPI---HDELIRIDN 401

Query: 375 RLETQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVES 434
             +     ++K  RN   G   +  PL L++     +GE+           D+E QV  +
Sbjct: 402 SRDMD-TASIK--RNFSEGEIEETVPLSLNA-----NGEV-----------DVESQVAVA 442

Query: 435 YTDKV-AAVPLTDAPLIGAPFRLVSFVAKYVSGADLVNK 472
             D++ A VPL DAPLIGAPFRLVSFVA+YVSGADL  K
Sbjct: 443 GEDEINAGVPLADAPLIGAPFRLVSFVARYVSGADLAAK 481

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823743|ref|XP_002879754.1| hypothetical protein ARALYDRAFT_345641 [Arabidopsis lyrata subsp. lyrata] gi|297325593|gb|EFH56013.1| hypothetical protein ARALYDRAFT_345641 [Arabidopsis lyrata subsp. lyrata]

 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 158/407 (38%), Positives = 239/407 (58%), Gaps = 46/407 (11%)

Query: 82  LQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQ 141
           LQ+EA   LEE + HL+ E E+HIQ EA LE  +  L+ E + + +  +A LEE +  L+
Sbjct: 132 LQKEAF--LEERLVHLKTENEAHIQNEALLEEKLLHLRTENEAHTQN-EALLEEKLLHLR 188

Query: 142 RQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEM----NIANLQSEKE---------- 187
            +N+  +Q EA LEE +  LR++N+ H Q E  LE+    NI  +Q + E          
Sbjct: 189 TENEDHIQNEARLEERLLHLRSENEAHKQNEDHLEVGGQNNIVFMQEKLEERLVQYKNKN 248

Query: 188 -FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLS 246
              L++ ++ E ++ QL DE +    K  SLE++++ L+ D++S    E  S+E I+ L+
Sbjct: 249 DMLLREMSSTEAQMRQLLDERSTFTQKEVSLEKKVQQLQHDEESLVAEEKSSREMISSLN 308

Query: 247 VDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQI 306
            +I +LR QV ELEES++NLL++N+ LKE VSSL+ Q  + +S       + +++ ++QI
Sbjct: 309 NEIARLRAQVTELEESKSNLLEQNQSLKETVSSLQVQHENHDSNA---KGASEEELNSQI 365

Query: 307 EAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESS 366
           EAA  L++KLITEN ELVEKVN+L +KL++   A+  S AI  +   +L  +  P+    
Sbjct: 366 EAACTLVEKLITENAELVEKVNELCIKLNQSQHASPESLAIEVEKSESL--EEIPI---H 420

Query: 367 DNMSSLNNRLETQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYSGEIVQIPLDDKEVQD 426
           D +  ++N  +    +     RN   G   +  PL L++     +GE+           D
Sbjct: 421 DELIRIDNSKDMDTALI---KRNLSEGEIEETVPLSLNA-----NGEV-----------D 461

Query: 427 LELQVVESYTDKVAA-VPLTDAPLIGAPFRLVSFVAKYVSGADLVNK 472
           +E QVV +  D+V+A VPL DAPLIGAPFRLVSFVA+YVSGADL  K
Sbjct: 462 VESQVVVAGEDEVSAGVPLADAPLIGAPFRLVSFVARYVSGADLAAK 508

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530165|ref|XP_003533654.1| PREDICTED: uncharacterized protein LOC100811378 [Glycine max]

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 151/441 (34%), Positives = 228/441 (51%), Gaps = 81/441 (18%)

Query: 72  NLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQA 131
           NL E    H+ Q+E ++  +ET++ L+ E E HIQKEA  + T+++ + E D   +K + 
Sbjct: 241 NLKEKNDMHM-QKETLS--QETIRKLKEENEGHIQKEAISKETIKKFEEENDKLVQK-ET 296

Query: 132 TLEETIQQLQRQNDLRMQKEATLE----------------------------ETIKQLRN 163
           +LE  I QLQ +N+  +QKE  ++                            E+++ L  
Sbjct: 297 SLEMRIAQLQSENNSLLQKEYIIDGILDLGPNPDHWAEQNKDQLLDPSPKEMESLEGLYQ 356

Query: 164 QNDL------HIQR--EGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA 215
           +  L      +I R    GLE   A L SE    LQKEA L ++ +QL +E   L++K  
Sbjct: 357 KAALWRVMFSYIGRRLHVGLETRFAQLHSENNSLLQKEATLVERTNQLLNEKEVLSLKGE 416

Query: 216 SLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKE 275
           SLE+++ LLE+D  S  + E+ +K+TI+ L+ +I  L++Q +                  
Sbjct: 417 SLEQKIYLLESDLSSLVEKENSTKDTISKLNGNIAVLQVQDL------------------ 458

Query: 276 NVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLD 335
                                SE KD  ++IEAA  L++KL+ EN ELVEKV +L V+LD
Sbjct: 459 --------------------ASENKDLKSEIEAAFTLVEKLMAENAELVEKVTELCVELD 498

Query: 336 RQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNGINGVH 395
            QS     +        T +     P  ES++  S    +L +    +VK++ N  N   
Sbjct: 499 HQSAVTEPNEMTEFAKPTGVAI---PPPESAEYASVSAPKLNSLEETSVKDNGNSFNDAK 555

Query: 396 ADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDAPLIGAPFR 455
                +  SS  ++ +GEIVQIPLDD E+QD+ELQ  ++  +   AVP+TDAPLIGAPFR
Sbjct: 556 HVVGVMSNSSLLSDDAGEIVQIPLDDNEIQDIELQDAKNVENDADAVPITDAPLIGAPFR 615

Query: 456 LVSFVAKYVSGADLVNKNASN 476
           L+SFVA +VSGADLV+ ++SN
Sbjct: 616 LISFVANFVSGADLVDPSSSN 636

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439795|ref|XP_004137671.1| PREDICTED: uncharacterized protein LOC101221440 [Cucumis sativus] gi|449497171|ref|XP_004160333.1| PREDICTED: uncharacterized LOC101221440 [Cucumis sativus]

 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 130/334 (38%), Positives = 195/334 (58%), Gaps = 13/334 (3%)

Query: 150 KEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAA 209
           K+A L++TIK L  +N++HI+R   L++ +   + EK  WLQKE AL  KI  L+++  A
Sbjct: 62  KDAKLDDTIKHLHEENNIHIKRMADLDLKLVECEGEKYSWLQKEEALMDKIRNLQEDKTA 121

Query: 210 LNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQE 269
           L+++ A L   +KLLE DK S    E  S+ETI   + DI++L+ QVVELEE + +LL E
Sbjct: 122 LDLEGARLLNIIKLLERDKASLILDEKSSRETIVDKNKDISRLQAQVVELEEQKRDLLHE 181

Query: 270 NRQLKENVSSLRSQLSSDESKKLQHATSEQKD------FSTQIEAAGALIDKLITENIEL 323
           N+QL   V+  +S+L + E +K+        D       ++Q++AA  L+DKLITEN EL
Sbjct: 182 NKQLTGKVADYQSKLLNLE-RKISSTYIHSSDRVTKEILNSQVDAARILVDKLITENAEL 240

Query: 324 VEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDN--MSSLNNRLETQGV 381
           + KVN+L V+L R +    L S +  D +    +DT   +ES     ++S+ +      +
Sbjct: 241 IGKVNELFVELQRVT-KTELPSGVVPDQMATEATDTTTFNESEPPVILNSVTSGKSLDAL 299

Query: 382 VAVKEDRNGINGVHADPPPLVLSS--SEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKV 439
            +V    + I G   D     ++S  S    +GEI QI L   E Q+   ++  +  D+ 
Sbjct: 300 KSVSIHSHSIGGDFVDLGSDFMASEASMPMAAGEIEQIQLHQFEDQNGTRELPATEIDE- 358

Query: 440 AAVPLTDAPLIGAPFRLVSFVAKYVSGADLVNKN 473
             V L+DAPLIGAP+RL+SF+AKYVSGADLV K+
Sbjct: 359 KDVLLSDAPLIGAPYRLISFMAKYVSGADLVGKS 392

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	476
TAIR|locus:2064168	482	AT2G38580 "AT2G38580" [Arabido	0.697	0.688	0.328	1.2e-42
MGI|MGI:3041210	718	Ccdc157 "coiled-coil domain co	0.777	0.515	0.227	3e-11
UNIPROTKB|F1PWZ2	1941	MYH7B "Uncharacterized protein	0.789	0.193	0.209	1e-09
UNIPROTKB|E1BS91	1147	CEP135 "Uncharacterized protei	0.684	0.284	0.230	1.2e-09
UNIPROTKB|E1C7U7	1155	CEP135 "Uncharacterized protei	0.684	0.282	0.230	1.2e-09
UNIPROTKB|E1BPX8	1942	LOC521764 "Uncharacterized pro	0.857	0.210	0.201	2.2e-09
UNIPROTKB|F1S4X7	1944	MYH7B "Uncharacterized protein	0.857	0.209	0.201	2.2e-09
ZFIN|ZDB-GENE-081030-1	1059	golga2 "golgi autoantigen, gol	0.808	0.363	0.244	2.3e-09
RGD|1305732	1679	Gcc2 "GRIP and coiled-coil dom	0.657	0.186	0.214	2.4e-09
SGD|S000004300	911	IMH1 "Protein involved in vesi	0.75	0.391	0.220	3.1e-09

TAIR|locus:2064168 AT2G38580 "AT2G38580" [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 114/347 (32%), Positives = 197/347 (56%)

Query:    69 ESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEK 128
             E+    E E +  +Q+EA+  LEE + HL+ E E+H+  EA LEG +  L+ E + + + 
Sbjct:   107 ENVRRLETENEAHIQKEAL--LEERLVHLKTENEAHVHNEALLEGKLLHLRTENEDHIQN 164

Query:   129 VQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 188
              +A LEE +  L+ +N+  +Q EA LEE +   R +N+ H Q E  LE  +   +++ + 
Sbjct:   165 -EALLEEKLLHLRTENEAHIQNEALLEERLLHFRTENEAHKQNEEKLEERLVQYKNKNDM 223

Query:   189 WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVD 248
              L++ ++ E ++ QL DE +    K ASLE++++ L+ D++S    E  S+E I+ L+ +
Sbjct:   224 LLREMSSTEAQMRQLLDERSTFTQKEASLEKKVQQLQHDEESLVAEEKSSREMISSLNNE 283

Query:   249 ITQLRMQVVELEESRNNLLQENRQLKENVXXXXXXXXXXXXKKLQHATSEQKDFSTQIEA 308
             I +LR QV ELE+S++NLL++N+ LKE +                   SE+ + ++QIEA
Sbjct:   284 IARLRAQVTELEKSKSNLLEQNQSLKETISNLQVQHENHDSNA--KGASEE-ELNSQIEA 340

Query:   309 AGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDN 368
             A  L++KLITEN +LVEKVN+L +KL++   A+  S AI  +   +L  +  P+    D 
Sbjct:   341 ACTLVEKLITENADLVEKVNELCIKLNQSQHASPESLAIEVEKSESL--EEIPIH---DE 395

Query:   369 MSSLNNRLETQGVVAVKEDRNGINGVHADPPPLVLSSS-EAEYSGEI 414
             +  ++N  +     ++K  RN   G   +  PL L+++ E +   ++
Sbjct:   396 LIRIDNSRDMD-TASIK--RNFSEGEIEETVPLSLNANGEVDVESQV 439

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

MGI|MGI:3041210 Ccdc157 "coiled-coil domain containing 157" [Mus musculus (taxid:10090)]

 Score = 187 (70.9 bits), Expect = 3.0e-11, P = 3.0e-11
 Identities = 90/395 (22%), Positives = 164/395 (41%)

Query:    38 GQKDDVRSQASEPAD-IQNVQVDADRHQSNGAESANLAEAER-QHLLQREAMAILEETVK 95
             GQKD +R Q S+    +Q  Q    R Q+  AE   LA+ E  +H L  E    L+  V 
Sbjct:   309 GQKDGLRKQVSKLEQALQQEQGQRQR-QTEEAERT-LAKCEHDRHQLLTETCD-LKTKVA 365

Query:    96 HLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLE 155
              L  + +   +    +E   QQL+ E     E+ +A  E  +QQL+ Q  L   +     
Sbjct:   366 VLEGDLKQQQKSIQAMEAKAQQLEEE----GER-RAAAERQVQQLEEQVQLLAGRLDGAS 420

Query:   156 ETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA 215
             + I+    + D    R   +  +  +LQ+++   LQ+   L+Q+  +LR        +R+
Sbjct:   421 QQIRWASTELDKEKARVDSMVRHQESLQAKQRTLLQQLDCLDQEREELRGSLDEAEAQRS 480

Query:   216 SLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKE 275
              LEE+L+ L++D++         +E +  L  +   L     +L+ + + L Q+  +LKE
Sbjct:   481 ELEEQLQSLQSDREQEQCQLQAQQELLQSLQQEKQDLEQVTTDLQLTISELRQQLEELKE 540

Query:   276 N--VXXXXXXXXXXXXKKLQHATSEQKDFSTQIEAAGALIDKLITENIEL---VEKVNDL 330
                +             ++Q +++  +D   Q++A    I  L  EN  L   + K+ ++
Sbjct:   541 RERLLVAFPDLHQPEEAQIQSSSNVTQDMERQVQANAIRIQVLQEENKRLQSMLTKIREV 600

Query:   331 SVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNG 390
             + +   + V  G    + S     +   T P +++    S L  R ++ G       R  
Sbjct:   601 AQQGGLKMVPQG---QLWSPPYKGIQGATPP-AQAQSAFSGLTGRRQSPGSRTSSTGRTH 656

Query:   391 INGVHADP---P---PLVLSSSEAEYSGEIVQIPL 419
               G+   P   P   P   S  +  +S    Q P+
Sbjct:   657 PGGLRTSPSRQPGGLPSKFSLGDGSHSASCTQNPI 691

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1PWZ2 MYH7B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 178 (67.7 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 84/401 (20%), Positives = 179/401 (44%)

Query:    62 RHQSNGAESANLAEAERQHLLQR--EAMAILEETVKHLRNERESHIQKEATLEGTVQQLQ 119
             R Q+   E + L E E++ L+ +     A   ++++ LR + E   + ++ L   VQ L+
Sbjct:  1286 RLQTESGELSRLLE-EKESLISQLSRGKASATQSLEELRRQLEEESKAKSALAHAVQALR 1344

Query:   120 NECDLYKEK--VQATLEETIQQL-QRQN----DLRMQKEA-TLEET--IKQLRNQNDLHI 169
             ++CDL +E+   +A  +  +Q+L  + N      R + EA  ++ T  +++ + +  L +
Sbjct:  1345 HDCDLLREQHEEEAEAQAELQRLLSKANAEVAQWRSKYEADAIQRTEELEEAKKKLALRL 1404

Query:   170 QR-EGGLEMNIANLQS-EK-EFWLQKEAA-LEQKISQLRDESAALNMKRASLEERLK-LL 224
             Q  E G+E   A   S EK +  LQ E+  +  ++ +    +AAL+ K+  LE  L+   
Sbjct:  1405 QEAEEGVEAAHAKCSSLEKAKLRLQTESEDVTLELERATSAAAALDKKQRHLERALEERR 1464

Query:   225 EADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVXXXXXXX 284
               ++++  ++E+  +E   GL  ++ +LR    E  E+   L +EN+ L+E +       
Sbjct:  1465 RQEEETQRELEAAQREA-RGLGTELFRLRHSHEEALEALETLKRENKNLQEEISDLTDQV 1523

Query:   285 XXXXXKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLS 344
                  K +Q     +K    +     A +++   E    +E+   L ++L+   V A + 
Sbjct:  1524 SLSG-KSIQELEKAKKALEGEKSELQAALEE--AEGALELEETKTLRIQLELSQVKAEVD 1580

Query:   345 SAIGS--DAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNGINGVHADPPPLV 402
               +    +  T L  + +   ES         R   + +   K+    +N +        
Sbjct:  1581 RKLAEKDEECTNLRRNHQRAVESLQASLDAETRARNEALRLKKKMEGDLNDLELQLGHAT 1640

Query:   403 LSSSEAEYSGEIVQIPLDDKEV-QDLELQVVESYTDKVAAV 442
               + EA+ +  ++Q  L +++  +D E ++V    ++  A+
Sbjct:  1641 RQAMEAQAATRLLQAQLKEEQAGRDEEQRLVAELREQAQAL 1681

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|E1BS91 CEP135 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 175 (66.7 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 80/347 (23%), Positives = 151/347 (43%)

Query:    30 ADPNHLINGQKDDVRSQASEPADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAMAI 89
             AD   L+  +K+ +R +     +  N++    +H  +  E+ N+ + E +    +  ++I
Sbjct:   577 ADFRRLM-AEKESLREKLKIQQEAANLEKSKMQHDISVLEN-NIQQFELERCELKSTISI 634

Query:    90 LEETVKHLRNERESHIQKEATLEGTVQQLQNE-CDLY--KEKVQATLEETIQQLQ-RQND 145
             L+E +K L NE +    K         QL+ E C L+   E++Q T+E+   +L  ++++
Sbjct:   635 LKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDE 694

Query:   146 LRMQKE--ATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQL 203
             L+  +E    LEE I +L  ++    +    L   I  L  EK+   +      +KI+ L
Sbjct:   695 LQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDNLQETVDEKTEKIACL 754

Query:   204 RDESAALNMKRASLEERLKL--LEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEE 261
              D  A  N ++     RL L  LE+  D    + S     I+ L   +     ++ E   
Sbjct:   755 DDNLA--NKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGR 812

Query:   262 SRNNLLQENRQLKENVXXXXXXXXXXXXKKLQHATSEQKDFSTQIE---AAGALIDKLIT 318
              +   L+ENR+L++++            + L+ A  E+++  T++       +  + LI 
Sbjct:   813 VKEIALKENRRLQDDLATMTRENQAVSSE-LEDAIREKEEMKTRVHNYITEVSRFESLIA 871

Query:   319 ----ENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTS-DTE 360
                 EN EL+EK   L  + +   + A  +    S     L S DT+
Sbjct:   872 SKEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSIRLELLSVDTD 918

GO:0007099 "centriole replication" evidence=IEA

GO:0010457 "centriole-centriole cohesion" evidence=IEA

UNIPROTKB|E1C7U7 CEP135 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 175 (66.7 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 80/347 (23%), Positives = 151/347 (43%)

Query:    30 ADPNHLINGQKDDVRSQASEPADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAMAI 89
             AD   L+  +K+ +R +     +  N++    +H  +  E+ N+ + E +    +  ++I
Sbjct:   580 ADFRRLM-AEKESLREKLKIQQEAANLEKSKMQHDISVLEN-NIQQFELERCELKSTISI 637

Query:    90 LEETVKHLRNERESHIQKEATLEGTVQQLQNE-CDLY--KEKVQATLEETIQQLQ-RQND 145
             L+E +K L NE +    K         QL+ E C L+   E++Q T+E+   +L  ++++
Sbjct:   638 LKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDE 697

Query:   146 LRMQKE--ATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQL 203
             L+  +E    LEE I +L  ++    +    L   I  L  EK+   +      +KI+ L
Sbjct:   698 LQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDNLQETVDEKTEKIACL 757

Query:   204 RDESAALNMKRASLEERLKL--LEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEE 261
              D  A  N ++     RL L  LE+  D    + S     I+ L   +     ++ E   
Sbjct:   758 DDNLA--NKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGR 815

Query:   262 SRNNLLQENRQLKENVXXXXXXXXXXXXKKLQHATSEQKDFSTQIE---AAGALIDKLIT 318
              +   L+ENR+L++++            + L+ A  E+++  T++       +  + LI 
Sbjct:   816 VKEIALKENRRLQDDLATMTRENQAVSSE-LEDAIREKEEMKTRVHNYITEVSRFESLIA 874

Query:   319 ----ENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTS-DTE 360
                 EN EL+EK   L  + +   + A  +    S     L S DT+
Sbjct:   875 SKEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSIRLELLSVDTD 921

GO:0005814 "centriole" evidence=IEA

GO:0007099 "centriole replication" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0010457 "centriole-centriole cohesion" evidence=IEA

UNIPROTKB|E1BPX8 LOC521764 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 175 (66.7 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 88/437 (20%), Positives = 189/437 (43%)

Query:    30 ADPNHLINGQKDDVRSQASEPADIQNVQVDAD----RHQSNGAESANLAEAERQHLLQR- 84
             A    L    +D +     +  ++Q    DA     R Q+   E + L E E++ L+ + 
Sbjct:  1251 ASAEKLCRAYEDQLSEAKIKVEELQRQLADASTQRGRLQTESGELSRLLE-EKESLISQL 1309

Query:    85 -EAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEK--VQATLEETIQQL- 140
                 A+  ++++ LR + E   + ++ L   VQ L+++CDL +E+   +A  +  +Q+L 
Sbjct:  1310 SRGKALATQSLEELRRQLEEESKAKSALAHAVQALRHDCDLLREQHEEEAEAQAELQRLL 1369

Query:   141 QRQN----DLRMQKEA-TLEET--IKQLRNQNDLHIQR-EGGLEMNIANLQS-EK-EFWL 190
              + N      R + EA  ++ T  +++ + +  L +Q  E G+E   A   S EK +  L
Sbjct:  1370 SKANAEVAQWRSKYEADAIQRTEELEEAKKKLALRLQEAEEGVEAAHAKCSSLEKAKLRL 1429

Query:   191 QKEAA-LEQKISQLRDESAALNMKRASLEERLK-LLEADKDSWTQMESVSKETIAGLSVD 248
             Q E+  +  ++ +    +AAL+ K+  LE  L+     +++   ++E+  +E    L  +
Sbjct:  1430 QTESEDVTLELERATSAAAALDKKQRHLERALEERRRQEEEMQRELEAAQREA-RSLGTE 1488

Query:   249 ITQLRMQVVELEESRNNLLQENRQLKENVXXXXXXXXXXXXKKLQHATSEQKDFSTQIEA 308
             + +LR    E  E+   L +EN+ L+E +            K +Q     +K    +   
Sbjct:  1489 LFRLRHSHEEALEALETLRRENKNLQEEISDLTDQVGLSG-KSVQELEKAKKALEGEKSE 1547

Query:   309 AGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGS--DAVTALTSDTEPMSESS 366
               A +++   E    +E+   L ++L+   V A +   +    +  T L  + +   ES 
Sbjct:  1548 LQAALEE--AEGALELEETKTLRIQLELSQVKAEVDRKLAEKDEECTNLRRNHQRAVESL 1605

Query:   367 DNMSSLNNRLETQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYSGEIVQIPLDDKEV-Q 425
                     R   + +   K+    +N +          ++EA+ +  ++Q  L +++  +
Sbjct:  1606 QASLDAETRARNEALRLKKKMEGDLNDLELQLGHATRQATEAQAATRLLQAQLKEEQAGR 1665

Query:   426 DLELQVVESYTDKVAAV 442
             D E ++     ++  A+
Sbjct:  1666 DEEQRLAAELREQAQAL 1682

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|F1S4X7 MYH7B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 175 (66.7 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 88/437 (20%), Positives = 188/437 (43%)

Query:    30 ADPNHLINGQKDDVRSQASEPADIQNVQVDAD----RHQSNGAESANLAEAERQHLLQR- 84
             A    L    +D +     +  ++Q    DA     R Q+   E + L E E++ L+ + 
Sbjct:  1253 ASAEKLCRAYEDQLNEAKIKVEELQRQLADASTQRGRLQTESGELSRLLE-EKESLISQL 1311

Query:    85 -EAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEK--VQATLEETIQQL- 140
                 A   ++++ LR + E   + ++ L   VQ L+++CDL +E+   +A  +  +Q+L 
Sbjct:  1312 SRGKATATQSLEELRRQLEEESKAKSALAHAVQALRHDCDLLREQHEEEAEAQAELQRLL 1371

Query:   141 QRQN----DLRMQKEA-TLEET--IKQLRNQNDLHIQR-EGGLEMNIANLQS-EK-EFWL 190
              + N      R + EA  ++ T  +++ + +  L +Q  E G+E   A   S EK +  L
Sbjct:  1372 SKANAEVAQWRSKYEADAIQRTEELEEAKKKLALRLQEAEEGVEAAHAKCSSLEKAKLRL 1431

Query:   191 QKEAA-LEQKISQLRDESAALNMKRASLEERLK-LLEADKDSWTQMESVSKETIAGLSVD 248
             Q E+  +  ++ +    +AAL+ K+  LE  L+     +++   ++E+  +E    L  +
Sbjct:  1432 QTESEDVTLELERATSAAAALDKKQRHLERALEDRRRQEEEMQRELEAAQREA-RSLGTE 1490

Query:   249 ITQLRMQVVELEESRNNLLQENRQLKENVXXXXXXXXXXXXKKLQHATSEQKDFSTQIEA 308
             + +LR    E  E+   L +EN+ L+E +            K +Q     +K    +   
Sbjct:  1491 LFRLRHSHEEALEALETLRRENKNLQEEISDLTDQVSLSG-KSIQELEKAKKALEGEKSE 1549

Query:   309 AGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGS--DAVTALTSDTEPMSESS 366
               A +++   E    +E+   L ++L+   V A +   +    +  T L  + +   ES 
Sbjct:  1550 LQAALEE--AEGALELEETKTLRIQLELSQVKAEVDRKLAEKDEECTNLRRNHQRAVESL 1607

Query:   367 DNMSSLNNRLETQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYSGEIVQIPLDDKEV-Q 425
                     R   + +   K+    +N +          ++EA+ +  ++Q  L +++  +
Sbjct:  1608 QASLDAETRARNEALRLKKKMEGDLNDLELQLGHATRQATEAQAATRLLQAQLKEEQAGR 1667

Query:   426 DLELQVVESYTDKVAAV 442
             D E ++     ++  A+
Sbjct:  1668 DEEQRLAAELREQAQAL 1684

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

ZFIN|ZDB-GENE-081030-1 golga2 "golgi autoantigen, golgin subfamily a, 2" [Danio rerio (taxid:7955)]

 Score = 172 (65.6 bits), Expect = 2.3e-09, P = 2.3e-09
 Identities = 105/429 (24%), Positives = 175/429 (40%)

Query:    30 ADPNHLINGQKDDVRSQASEPADIQNVQVDA--DRHQSNGAESANLAEAERQHLLQREAM 87
             A   H+ N     + +  S P   QN   DA  D H        +  E+ RQ  L ++  
Sbjct:    98 AGAEHVSN-PASAINTDNSAP---QNYPADANGDEHPLENNRPLSSTESLRQ--LSQQLN 151

Query:    88 AILEETVKHLRNERESHIQKEATLEGTVQQLQNECD---LYKEKVQATLEETIQQLQRQN 144
              +L E+  H+  + +     E  LE   Q+L    D   L   ++ + LE   +Q Q  +
Sbjct:   152 GLLSESSTHINGDSDPPAVNEKELETRNQELSAALDSSALTNTQLTSKLETLTKQSQELS 211

Query:   145 DLRMQKEAT-LEE--TIKQ--LRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQK 199
             D ++QKE    E+  T +Q  +R Q  +HIQ  G L    + LQ+   +  Q   A  QK
Sbjct:   212 D-QLQKERKEFEQKFTKEQGAMREQLQVHIQTIGILVSEKSELQTALSYTQQ---AARQK 267

Query:   200 ISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVEL 259
              ++  D S+ L   +  + E  + L +      Q E  +KE    L  +   LR++++  
Sbjct:   268 AAEAEDLSSRLQASKQRVSELERTLSSVSTQQKQHERHNKE----LEKERDSLRLEIIRF 323

Query:   260 ----EESR--NNLLQENRQLKENVXXXXXXXXXXXXKKLQHATSEQKDFSTQIEAAGA-- 311
                 EESR  ++ L E  +L+ N             K+L+ A    + FS+Q        
Sbjct:   324 NNVSEESRQQSSELSEQLKLRVNENSALKLELEDLRKRLEMADVMLQQFSSQSGPPSEHQ 383

Query:   312 -----LIDKLITEN--IELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSE 364
                  L +K   EN   +L+E V  L  + D+ +V       +  D    L S    MSE
Sbjct:   384 QLQLLLEEKHQLENHATQLMESVAQLQAERDQYAVQMQEDGRVWKDKTEQLLSQVRLMSE 443

Query:   365 SSDNMSSLNNRLETQGVVAVKEDRNGINGVHADPPPLV-LSS-SEAEYS-GEIVQIPLDD 421
               D+ ++    LE Q  +   E+   +     +P     LS  SE E +  E ++   ++
Sbjct:   444 ERDSTAA--QILELQERIMELENTAAVMSTEQEPQASSQLSGPSETELALQETLRSLQEE 501

Query:   422 KEVQDLELQ 430
             ++   L+ Q
Sbjct:   502 RDALSLQFQ 510

GO:0005794 "Golgi apparatus" evidence=IEA

RGD|1305732 Gcc2 "GRIP and coiled-coil domain containing 2" [Rattus norvegicus (taxid:10116)]

 Score = 174 (66.3 bits), Expect = 2.4e-09, P = 2.4e-09
 Identities = 70/327 (21%), Positives = 144/327 (44%)

Query:    44 RSQASEPADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERES 103
             + QAS+  ++Q     A   +    E+ N  + E + LL +E ++ LE T+K+L+ +   
Sbjct:   505 QQQASDVHELQQKLRTAFNEKDALLETINRLQGENEKLLSQELVSELESTMKNLKADNSM 564

Query:   104 HI----QKEATL---EGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEE 156
             ++    QK+  L   E  +  L  E D +  K++ + EE I  L ++ +   +    L E
Sbjct:   565 YLASLGQKDTLLQELEAKISSLAEEKDDFISKIKTSREE-IDDLHQKWEREQKLSVELRE 623

Query:   157 TIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRAS 216
               +Q    N    QR   L   +  +  EK    Q +  +  ++  + ++  AL+ K  S
Sbjct:   624 AAEQAAQHNSELRQRVSELTGKLDEILREKS---QNDQNIMVQMKTMTEDQEALSSKIKS 680

Query:   217 LEERLKLLEADKDSWTQ-MESVSKETIAGLSVDITQLRMQVVELEESRNNL--LQENRQL 273
             L E    L ++K   ++ +E++  +        + +   ++  + E R++L  L EN QL
Sbjct:   681 LYEENNRLHSEKVQLSRDLEALQSQQDFAYKEHVAEFEKKLQLMVEERDDLNKLLENEQL 740

Query:   274 KENVXXXXXXXXXXXXKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVK 333
             +++             +      +E++D  T ++A G  +  +  E   LV + +   ++
Sbjct:   741 QKSFVKTQLYEFLKQMRPSILEDNEEEDVVTVLKAVGESLVTVKEEKHNLVFEYDARVLE 800

Query:   334 LDRQSVAAGLSSAIGSDAVTALTSDTE 360
             L+R+       S +  + + AL  D+E
Sbjct:   801 LERRIKCLQEESVVQCEELRALVRDSE 827

GO:0000042 "protein targeting to Golgi" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0005802 "trans-Golgi network" evidence=ISO;ISS

GO:0006622 "protein targeting to lysosome" evidence=ISO;ISS

GO:0016020 "membrane" evidence=IEA

GO:0031023 "microtubule organizing center organization" evidence=ISO;ISS

GO:0034067 "protein localization to Golgi apparatus" evidence=ISO;ISS

GO:0034453 "microtubule anchoring" evidence=ISO;ISS

GO:0034499 "late endosome to Golgi transport" evidence=ISO;ISS

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO

GO:0042802 "identical protein binding" evidence=IEA;ISO

GO:0070861 "regulation of protein exit from endoplasmic reticulum" evidence=ISO;ISS

GO:0071955 "recycling endosome to Golgi transport" evidence=ISO;ISS

GO:0090161 "Golgi ribbon formation" evidence=ISO;ISS

GO:0043001 "Golgi to plasma membrane protein transport" evidence=ISO

SGD|S000004300 IMH1 "Protein involved in vesicular transport" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 170 (64.9 bits), Expect = 3.1e-09, P = 3.1e-09
 Identities = 85/386 (22%), Positives = 162/386 (41%)

Query:    33 NHLINGQKDDVRSQASEP-ADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAMAILE 91
             N L++  KD+++  +S+   +++ V+++ D  +   A      EA+   L  R  + +L 
Sbjct:   404 NELVDA-KDEIKESSSKQNEEVKTVKLELDDLRHKNATMIEAYEAKNTEL--RSKIELLS 460

Query:    92 ETVKHLRNERESHIQKEATLEGTVQQLQNECD-LYKEKVQATLEETIQQLQRQNDLRMQK 150
             + V+HL+N      +++ T +  V +L  E   L  EK   T E T   L+     + + 
Sbjct:   461 KKVEHLKNLCTEKEKEQTTSQNKVAKLNEEISQLTYEKSNITKELT--SLRTSYKQKEKT 518

Query:   151 EATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAAL 210
              + LEE +KQ   Q D+  +    L  + A + +  +   ++   L   I++  +     
Sbjct:   519 VSYLEEQVKQFSEQKDVAEKSTEQLRKDHAKISNRLDLLKKENETLHNDIAKNSNSYEEY 578

Query:   211 NMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQEN 270
               +   L ERL +L+   ++   ++S S E I  +     +L    V+L+ES   +L   
Sbjct:   579 LKENGKLSERLNILQEKYNTLQNVKSNSNEHIDSIKRQCEELN---VKLKESTKKILSLE 635

Query:   271 RQLKENVXXXXXXXXXXXXKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDL 330
              +L E               +   + S+  D S Q E    L +KL      L ++ N L
Sbjct:   636 DELNEYANIVQDKTREANTLRRLVSDSQTDDSSKQKE----LENKLAY----LTDEKNKL 687

Query:   331 SVKLDRQSVAAGLSSAIGSDAVTALTSDT-------EPMSESSDNMSSLNNRLETQGVVA 383
               +LD Q+             VT L S+        E +    D +  +NN ++ +   A
Sbjct:   688 EAELDLQTSRKATELQEWKHTVTELKSEIHALKLREEGLKSEVDALKHVNNDIKRK-TQA 746

Query:   384 VKEDRNGINGVHADPPPLVLSSSEAE 409
               +D + +  + ++   L LS S+A+
Sbjct:   747 TSDDSDQLEQITSN---LKLSLSKAD 769

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IEA;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0000042 "protein targeting to Golgi" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	476
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-08
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	9e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	5e-04
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	6e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-04
pfam00429	560	pfam00429, TLV_coat, ENV polyprotein (coat polypro	0.001
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.002
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.002
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	0.002
TIGR03185	650	TIGR03185, DNA_S_dndD, DNA sulfur modification pro	0.002
TIGR03185	650	TIGR03185, DNA_S_dndD, DNA sulfur modification pro	0.003

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 56/234 (23%), Positives = 99/234 (42%), Gaps = 1/234 (0%)

Query: 60  ADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQ 119
                   +    L E  RQ       +  L+  +  L  E E    +   LE  +++L+
Sbjct: 691 KSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELE 750

Query: 120 NECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNI 179
            E +  +E++   LEE ++ L+       ++   LEE  + L+ + +   +     E  +
Sbjct: 751 EELEELQERL-EELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRL 809

Query: 180 ANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSK 239
             L+ E E   Q+   LEQ+I +L +E   L  K   LEE L+ LE + +   +     +
Sbjct: 810 DALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELE 869

Query: 240 ETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQ 293
                L  ++ +L  +  ELEE    L  E  +LKE +  LR +L   E+K  +
Sbjct: 870 AEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLER 923

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 60.9 bits (148), Expect = 1e-09
 Identities = 70/329 (21%), Positives = 136/329 (41%), Gaps = 31/329 (9%)

Query: 90  LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYK----EKVQATLEETIQQLQRQND 145
           LE+ ++ L  + E   ++   L+  +++L+    L K     K    LEE + +L+ + +
Sbjct: 198 LEKQLEKLERQAEK-AERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELE 256

Query: 146 LRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRD 205
              ++    E+ I++L+            L   +  LQ E     ++   LE +IS LR+
Sbjct: 257 ELQEELEEAEKEIEELK-------SELEELREELEELQEELLELKEEIEELEGEISLLRE 309

Query: 206 ESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNN 265
               L  +   LEERL+ L+   ++  +     +  +  L   + +L     ELEE  + 
Sbjct: 310 RLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSA 369

Query: 266 LLQE----NRQLKENVSSLRSQLSSDESKK------LQHATSEQKDFSTQIEAAGALIDK 315
           LL+E       L+E ++ L ++L+   ++       ++      +  S ++E     + +
Sbjct: 370 LLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKE 429

Query: 316 LITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNR 375
           L  E  EL  ++ +L+ +L+              +    L    E +      +SSL  R
Sbjct: 430 LEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEAR 489

Query: 376 LET--------QGVVAVKEDRN-GINGVH 395
           L+         QGV AV E    G+ GV+
Sbjct: 490 LDRLEAEQRASQGVRAVLEALESGLPGVY 518

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 59.0 bits (143), Expect = 4e-09
 Identities = 51/240 (21%), Positives = 110/240 (45%), Gaps = 5/240 (2%)

Query: 84  REAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQ 143
           RE +  L+E +  L+ E E    + + L   +++L+NE +  +E+++  L+E I+ L+ +
Sbjct: 280 REELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEE-LKEKIEALKEE 338

Query: 144 NDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQL 203
            + R      LE+ + +L    +   ++   L   +  L+   E   ++ A LE +++++
Sbjct: 339 LEERETLLEELEQLLAELEEAKEELEEK---LSALLEELEELFEALREELAELEAELAEI 395

Query: 204 RDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESR 263
           R+E   L  +  SLEERL+ L    +   +     +  +  L  ++ +L  ++ ELEE  
Sbjct: 396 RNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQL 455

Query: 264 NNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIEL 323
             L    ++L+  ++ L+ +L     K+L    +       +  A+  +   L      L
Sbjct: 456 EELRDRLKELERELAELQEEL-QRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGL 514

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 55/256 (21%), Positives = 109/256 (42%), Gaps = 3/256 (1%)

Query: 124 LYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQ 183
           L + +    LEE I++L+ +     +  A L + +++L  + +   +    L   I+ L+
Sbjct: 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR 732

Query: 184 SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL-KLLEADKDSWTQMESVSKETI 242
            +      +   LE++I+QL  E   L  +   LEERL +  E   ++  ++E + +  I
Sbjct: 733 KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL-EAQI 791

Query: 243 AGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDF 302
             L  ++  LR  + EL      L +E   L+E + SL  ++ +   ++L+    + ++ 
Sbjct: 792 EQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI-AATERRLEDLEEQIEEL 850

Query: 303 STQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPM 362
           S  IE+  A I++L     EL  ++  L  +      A  L  +   +    L       
Sbjct: 851 SEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR 910

Query: 363 SESSDNMSSLNNRLET 378
           SE    +  L  +L  
Sbjct: 911 SELRRELEELREKLAQ 926

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 55.4 bits (134), Expect = 5e-08
 Identities = 59/254 (23%), Positives = 114/254 (44%), Gaps = 21/254 (8%)

Query: 68  AESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKE 127
             +A L E E +    R  ++ LEE ++ L+ E  +   + + LE   Q L+       E
Sbjct: 257 ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLA-NLE 315

Query: 128 KVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE 187
           +    LE  +++L+ + D   ++ A LEE +++L+ + +        LE  +  L++E E
Sbjct: 316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELE-------SLEAELEELEAELE 368

Query: 188 FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGL-- 245
               +   LE+++  LR + A L ++ ASL   ++ LEA  +         ++ I  L  
Sbjct: 369 ELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK 428

Query: 246 ---SVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDF 302
                ++ +L+ ++ ELEE    L +E  +L+E +  LR +        L+ A       
Sbjct: 429 KLEEAELKELQAELEELEEELEELQEELERLEEALEELREE--------LEEAEQALDAA 480

Query: 303 STQIEAAGALIDKL 316
             ++    A +D L
Sbjct: 481 ERELAQLQARLDSL 494

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 55.1 bits (133), Expect = 6e-08
 Identities = 58/301 (19%), Positives = 136/301 (45%), Gaps = 8/301 (2%)

Query: 42  DVRSQASEPADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNER 101
            +     + A+++    +  +      E   L +  ++       ++ L + +  L  E 
Sbjct: 685 KIEELEEKIAELEKALAELRKELEELEE--ELEQLRKELEELSRQISALRKDLARLEAEV 742

Query: 102 ESHIQKEATLEGTVQQLQNECDLYKEKVQ------ATLEETIQQLQRQNDLRMQKEATLE 155
           E   ++ A L   + +L+ E +  +E+++      A  E  I++L+ Q +   ++   L 
Sbjct: 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802

Query: 156 ETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA 215
           E + +LR +  L  +    L   + +L+       ++   LE++I +L ++  +L  +  
Sbjct: 803 EALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE 862

Query: 216 SLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKE 275
            LEE ++ LE++ ++     +  +E +A L  ++ +L  ++ ELE  R+ L +E  +L+E
Sbjct: 863 ELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELRE 922

Query: 276 NVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLD 335
            ++ L  +L   E +         +++S  +E A AL +K+  +  E   ++  L  K+ 
Sbjct: 923 KLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982

Query: 336 R 336
            
Sbjct: 983 E 983

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 51.2 bits (123), Expect = 9e-07
 Identities = 71/323 (21%), Positives = 113/323 (34%), Gaps = 40/323 (12%)

Query: 52  DIQNVQVDADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERES-------H 104
           D+Q + V  D   +       L +AE             EE +     E E         
Sbjct: 589 DLQRLDVP-DYAANETELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEA 647

Query: 105 IQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQ-NDLRMQKEATLEETIKQLRN 163
                     +Q+LQNE    K+K++  + E  QQ + Q   L  Q +  LE+    L  
Sbjct: 648 RTALKQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEA 707

Query: 164 QNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKL 223
             D    RE   E            W   E  L+ +++QL   SAA+   R   + RLK 
Sbjct: 708 LKDDF--RELRTER--------LAKWQVVEGELDNQLAQL---SAAIEAARTQAKARLKE 754

Query: 224 LEADKDSWTQMESVSKETIAGLSVDITQL----------RMQVVELEE-------SRNNL 266
           L+   D       V   T+  L   I +L          R +V E           R++L
Sbjct: 755 LKKQYDRELASLDVDPNTVKELKRQIEELETTIERIAVRRPEVREYRAFMQETWLHRDSL 814

Query: 267 LQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEK 326
            +E   L   +  L S    +  ++L     + K    ++E     ++K + +  EL+  
Sbjct: 815 REERPNLAIQLRELESSA-EELQQELTRLIKDTKLRRKKLEQERKALEKQLDQLDELLRG 873

Query: 327 VNDLSVKLDRQSVAAGLSSAIGS 349
           + D   +L      A  + A GS
Sbjct: 874 LRDEMRQLAELKEPANANQAEGS 896

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 43/218 (19%), Positives = 96/218 (44%), Gaps = 6/218 (2%)

Query: 126 KEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSE 185
           KE+ +  LE T + L+R  DL  + E  LE+  +Q          +    E+ +A L ++
Sbjct: 174 KEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAK 233

Query: 186 KEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGL 245
            +   ++   LE+++S+L +E   L  +    E+ ++ L+++ +   +     +E +  L
Sbjct: 234 LKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLEL 293

Query: 246 SVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK------KLQHATSEQ 299
             +I +L  ++  L E    L  E  +L+E +  L+ ++ + + +       L+      
Sbjct: 294 KEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLL 353

Query: 300 KDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQ 337
            +     E     +  L+ E  EL E + +   +L+ +
Sbjct: 354 AELEEAKEELEEKLSALLEELEELFEALREELAELEAE 391

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 57/291 (19%), Positives = 122/291 (41%), Gaps = 21/291 (7%)

Query: 61  DRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQN 120
           D  +  G     + + E++    +E +  LEE +  L  E E+   +   LE  +++L+ 
Sbjct: 713 DASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEE 772

Query: 121 ECDLYKEKV--------QATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQRE 172
           +    +E +         + + E   +L +  +   + EA L E  ++L   N L +++E
Sbjct: 773 DLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKL---NRLTLEKE 829

Query: 173 GGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA-------SLEERLKLLE 225
             LE  I  LQ ++    ++  ++E++I  L  +   L  +          LE RL  L+
Sbjct: 830 -YLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLK 888

Query: 226 ADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285
            ++D         +  I  L   I + R ++ EL+     L +E  ++++          
Sbjct: 889 KERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEE--I 946

Query: 286 SDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDR 336
            +E   L+   +E +    +I A   +    I E  E+++++++L  K  +
Sbjct: 947 PEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAK 997

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 45/215 (20%), Positives = 93/215 (43%), Gaps = 6/215 (2%)

Query: 127 EKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEK 186
           E     LEE ++ L+ +          L   +++L  Q +   +    LE  +  LQS  
Sbjct: 680 EAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRL 739

Query: 187 EFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLS 246
           E   ++   LE+++ +L++    L  +  SLEE L  L+ + +   +     +E +  L 
Sbjct: 740 EELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELE 799

Query: 247 VDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK------KLQHATSEQK 300
            ++ +   ++  LE    +L Q   +L++ +  L  ++   E K      +L+    E +
Sbjct: 800 EELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELE 859

Query: 301 DFSTQIEAAGALIDKLITENIELVEKVNDLSVKLD 335
           +   ++E   A  ++L  E  EL E+  +L  +L 
Sbjct: 860 ELKEELEELEAEKEELEDELKELEEEKEELEEELR 894

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 48.1 bits (115), Expect = 9e-06
 Identities = 45/252 (17%), Positives = 93/252 (36%), Gaps = 23/252 (9%)

Query: 127 EKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEK 186
           E++   ++E  QQL+R    R + E       ++   +    ++ +  LE     ++ + 
Sbjct: 187 ERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQL 246

Query: 187 EFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVS-KETIAGL 245
               ++   L ++IS+L      +      L +++K L  +       E +  KE I  L
Sbjct: 247 ASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE-------EQLRVKEKIGEL 299

Query: 246 SVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQ 305
             +I  L   + E E    +  +   +L+  +  L +++               ++   +
Sbjct: 300 EAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI---------------EELERE 344

Query: 306 IEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSES 365
           IE      DKL  E  EL E++ DL  +L+        +     D    L      ++E 
Sbjct: 345 IEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINEL 404

Query: 366 SDNMSSLNNRLE 377
              +  L   L+
Sbjct: 405 KRELDRLQEELQ 416

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 66/315 (20%), Positives = 138/315 (43%), Gaps = 31/315 (9%)

Query: 83  QREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQR 142
            RE +  L+E +K    E E    +   LE  +++L+ E         + LEE I++LQ+
Sbjct: 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLE--------VSELEEEIEELQK 288

Query: 143 QNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQ 202
           +      + + LE+  + LR +              +ANL+ + E    +   LE K+ +
Sbjct: 289 ELYALANEISRLEQQKQILRER--------------LANLERQLEELEAQLEELESKLDE 334

Query: 203 LRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEES 262
           L +E A L  K   L+E L+ LEA+ +         +  +  L   +  LR +V +LE  
Sbjct: 335 LAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ 394

Query: 263 RNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIE 322
             +L  E  +L+  +  L  +    + +  +     ++    +++A    +++ + E  E
Sbjct: 395 IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQE 454

Query: 323 LVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLE--TQG 380
            +E++ +   +L  +   A         A+ A   +   +    D++  L   LE  ++G
Sbjct: 455 ELERLEEALEELREELEEA-------EQALDAAERELAQLQARLDSLERLQENLEGFSEG 507

Query: 381 VVAVKEDRNGINGVH 395
           V A+ ++++G++G+ 
Sbjct: 508 VKALLKNQSGLSGIL 522

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 37/222 (16%), Positives = 87/222 (39%), Gaps = 6/222 (2%)

Query: 70  SANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKV 129
            A +A  ER    +   +   EE +  L  E +  + +   LE  +++ +   D   E+ 
Sbjct: 300 EAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEY 359

Query: 130 QA------TLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQ 183
                    L   ++++ ++      +     E +++L+ + +   +    L+  +  L 
Sbjct: 360 AELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLS 419

Query: 184 SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIA 243
            E        A +E KI++L +E     ++    E +L+ L AD   + Q     KE   
Sbjct: 420 EELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479

Query: 244 GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285
            +  ++++L+ ++ E E       +  R  +     L++ + 
Sbjct: 480 RVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQ 521

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 36/177 (20%), Positives = 83/177 (46%), Gaps = 5/177 (2%)

Query: 68  AESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQ----LQNECD 123
           A    L E E       + +A LEE  + L  +  + +++   L   +++    L+ E  
Sbjct: 334 ALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELA 393

Query: 124 LYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQ 183
             + +++  L+  I+ L+ + +   ++   L+E +K+L  + +        L   +  L+
Sbjct: 394 EIRNELE-ELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELE 452

Query: 184 SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKE 240
            + E    +   LE+++++L++E   L  + +SLE RL  LEA++ +   + +V + 
Sbjct: 453 EQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEA 509

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 41/243 (16%), Positives = 100/243 (41%), Gaps = 28/243 (11%)

Query: 84  REAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKV------QATLEETI 137
            + ++     +  +  E E   Q+E  L+  +++L+ +    ++++         LE  I
Sbjct: 708 SQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARI 767

Query: 138 QQLQRQ--------NDL-RMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 188
           ++L+          NDL      + + E   +L    +   + E  L      L      
Sbjct: 768 EELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRL--- 824

Query: 189 WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVD 248
              ++  LE++I +L+++   L  +  S+E+ ++ L   K+    +E   +E    L   
Sbjct: 825 -TLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEE---LEEELEE----LEAA 876

Query: 249 ITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES--KKLQHATSEQKDFSTQI 306
           +  L  ++ +L++ R+ L  + R+L+  +  L +Q+        +L+      ++  ++I
Sbjct: 877 LRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEI 936

Query: 307 EAA 309
           E  
Sbjct: 937 EDP 939

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 59/284 (20%), Positives = 121/284 (42%), Gaps = 11/284 (3%)

Query: 36  INGQKDDVRSQASEPADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAMAI--LEET 93
              + +++  Q SE   +++++   +  +    E   L E + +   +     I  LEE 
Sbjct: 183 AKAKIEELEGQLSE--LLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEER 240

Query: 94  VKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEAT 153
           +  L  E+E   + +A L            + +E++   LE  +++L+ + +   + E  
Sbjct: 241 LAELEEEKERLEELKARLLEIESLELEALKIREEEL-RELERLLEELEEKIERLEELERE 299

Query: 154 LEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMK 213
           +EE  ++L     L  + E  LE  + +L+   E   +K   LE ++ +L +E    N  
Sbjct: 300 IEELEEELEGLRALLEELEELLE-KLKSLEERLEKLEEKLEKLESELEELAEE---KNEL 355

Query: 214 RASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQL 273
              LEERLK LE   +   +    + E +  L   I +L+ ++ EL  +   + +E  +L
Sbjct: 356 AKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEEL 415

Query: 274 KENVSSLRSQLSSDES--KKLQHATSEQKDFSTQIEAAGALIDK 315
           ++ +  L  +L   E   KKL+   ++ +     I       +K
Sbjct: 416 EKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEK 459

Length = 908

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 42.3 bits (100), Expect = 6e-04
 Identities = 49/235 (20%), Positives = 104/235 (44%), Gaps = 21/235 (8%)

Query: 106 QKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQN 165
           ++   LE  ++ L+ E +  +E+++    E + + + + +   ++   LEE I + R   
Sbjct: 475 ERVEELEAELEDLEEEVEEVEERLERA--EDLVEAEDRIERLEERREDLEELIAERRETI 532

Query: 166 DLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLE 225
           +   +R   L    A L++E E   +  A  E++  + R+E A LN K A L+ER++ L 
Sbjct: 533 EEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESL- 591

Query: 226 ADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285
                         E I  L   I     ++  L E R  L + N + +E ++  R +  
Sbjct: 592 --------------ERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKR 637

Query: 286 SDESK----KLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDR 336
             E++    +++ A  +++     +E     +D+L  E  +L  ++  +  +L+ 
Sbjct: 638 ELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEE 692

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.0 bits (99), Expect = 8e-04
 Identities = 45/210 (21%), Positives = 91/210 (43%), Gaps = 4/210 (1%)

Query: 125 YKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQS 184
              ++Q  L E ++ L+R+      +   +E  + +L  +     ++ G +E  I  L+ 
Sbjct: 672 EPAELQ-RLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQ 730

Query: 185 EKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAG 244
           E+E   ++   LE+ +S L  E   +  +   LE R++ LE D     +  +  +  ++ 
Sbjct: 731 EEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH 790

Query: 245 LSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFST 304
             +   Q  +  +E E SR        + K N  +L  +    E ++LQ    ++ D   
Sbjct: 791 SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQ---EQRIDLKE 847

Query: 305 QIEAAGALIDKLITENIELVEKVNDLSVKL 334
           QI++    I+ L  +  EL E++ +L   L
Sbjct: 848 QIKSIEKEIENLNGKKEELEEELEELEAAL 877

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|215915 pfam00429, TLV_coat, ENV polyprotein (coat polyprotein)

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 24/117 (20%)

Query: 116 QQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGL 175
             LQ+        +QA LE +I  L+           +L E + Q R   DL    +GGL
Sbjct: 426 TSLQHALI---SDIQA-LESSINDLEDSLT-------SLAEVVLQNRRGLDLLFLEQGGL 474

Query: 176 EMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWT 232
               A LQ E  F+      +   I++L++           L +R +LL  ++  + 
Sbjct: 475 ---CAALQEECCFYADHSGIVRDSIAKLQER----------LPQRQRLLTDNQLWFE 518

Length = 560

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 41/272 (15%), Positives = 101/272 (37%), Gaps = 25/272 (9%)

Query: 51  ADIQNVQVDADRHQSNGAESANLAEAERQHLLQ--REAMAILEETVKHLRNERESHIQKE 108
            ++  ++++    + +  +       E + L +  RE    L E ++     +E   +K 
Sbjct: 476 LELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKL 535

Query: 109 ATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEET---IKQLRNQN 165
             LE  +++L+   +  + +        ++   ++    +++   L      +++LR + 
Sbjct: 536 EKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERL 595

Query: 166 DLHIQREGGLEMNIANLQSEKEF--WLQKEAALEQKISQLRDESAALNM----------- 212
               ++   LE  ++ L+   +     + E  LE+   +L  E   LN+           
Sbjct: 596 KELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAA 655

Query: 213 ------KRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNL 266
                 K   LE  ++      ++  Q+E   +E +  L  ++ QLR ++ EL +    +
Sbjct: 656 LEELEEKVEELEAEIRRELQRIENEEQLEEKLEE-LEQLEEELEQLREELEELLKKLGEI 714

Query: 267 LQENRQLKENVSSLRSQLSSDESKKLQHATSE 298
            Q   +L+   + L       E  +      E
Sbjct: 715 EQLIEELESRKAELEELKKELEKLEKALELLE 746

Length = 908

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 4/101 (3%)

Query: 130 QATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW 189
             +  E + +LQ++     ++ A L+E + +L+ +N    Q    LE  +  LQ E    
Sbjct: 61  TPSARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKE---- 116

Query: 190 LQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS 230
           L +   L     +L +E+  L  + A L++  + LEA+ + 
Sbjct: 117 LARIKQLSANAIELDEENRELREELAELKQENEALEAENER 157

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 33/144 (22%), Positives = 68/144 (47%), Gaps = 16/144 (11%)

Query: 83  QREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQR 142
           +  A  I+EE  K         ++KEA LE      + E    + +++  L+E   +LQR
Sbjct: 31  EELAKRIIEEAKKEAET-----LKKEALLEA-----KEEVHKLRAELERELKERRNELQR 80

Query: 143 QNDLRMQKEATLEETIKQLRNQNDLHIQREGGL---EMNIANLQSEKEFWLQKEAALEQK 199
                +Q+E TL+  ++ L  + +   ++E  L   E N+   + E E  + ++    ++
Sbjct: 81  LERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELER 140

Query: 200 ISQL-RDESAALNMKRASLEERLK 222
           IS L ++E+  + ++   +EE  +
Sbjct: 141 ISGLTQEEAKEILLE--EVEEEAR 162

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 33/309 (10%)

Query: 39  QKDDVRSQASEPADIQNVQVDADRHQSNG----AESANLAEAERQHLLQREAMAILEETV 94
           Q +     A E A ++N   +A R   +              ER+ L ++     +E   
Sbjct: 221 QSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKE--IEAAR 278

Query: 95  KHLRNERESHIQKEATL-------EGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLR 147
           K  R +          L       + T  QLQ E +  + + Q T EE  ++ +   +  
Sbjct: 279 KANRAQLRELAADPLPLLLIPNLLDSTKAQLQKE-EQSQ-QNQLTQEELEERDKELLE-S 335

Query: 148 MQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDES 207
           + K A   E +K++  +    I +    +  I +  S  E   Q E  ++Q   +L+D  
Sbjct: 336 LPKLALPAEHVKEIAAEL-AEIDKPATTDSEIPHRLSGSEL-TQLEVLIQQVKRELQDAK 393

Query: 208 AALNMKRASLEERLKLLEADKDSWTQMESV-SKETIAGLSVDITQLRMQVVELEESRNNL 266
           + L  +   LEE L  ++       ++ ++ S+E IA L  ++ + + ++   E     L
Sbjct: 394 SQLLKELRELEEELAEVD------KKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEEL 447

Query: 267 LQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIE--LV 324
           L++   LKE + +LR  L     +K+     E+      I  A     K + E  E  L 
Sbjct: 448 LRQLETLKEAIEALRKTLDEKTKQKINAFELER-----AITIA-DKAKKTLKEFREKLLE 501

Query: 325 EKVNDLSVK 333
            K+  L  +
Sbjct: 502 RKLQQLEEE 510

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria [DNA metabolism, Restriction/modification]. Length = 650

>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 59/302 (19%), Positives = 118/302 (39%), Gaps = 41/302 (13%)

Query: 51  ADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEAT 110
            D+ NV     + +   +  + +   E +   Q E    L + + HLRNE E   +   +
Sbjct: 189 GDLTNVLRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLES 248

Query: 111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQ 170
           LE   +      DL++E+ Q   +              + EA  +    QLR        
Sbjct: 249 LEKKFRSEGG--DLFEEREQLERQLK------------EIEAARKANRAQLREL----AA 290

Query: 171 REGGLEMNIANLQSEKEFWLQKEAALEQKISQ-------------LRDESA---ALNMKR 214
               L +    L S K    ++E + + +++Q             L   +     +    
Sbjct: 291 DPLPLLLIPNLLDSTKAQLQKEEQSQQNQLTQEELEERDKELLESLPKLALPAEHVKEIA 350

Query: 215 ASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK 274
           A L E  K    D +       +S   +  L V I Q++    EL+++++ LL+E R+L+
Sbjct: 351 AELAEIDKPATTDSEI---PHRLSGSELTQLEVLIQQVKR---ELQDAKSQLLKELRELE 404

Query: 275 ENVSSLRSQLSS-DESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVK 333
           E ++ +  ++S+    +++     E  +   ++  + A I++L+ +   L E +  L   
Sbjct: 405 EELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKT 464

Query: 334 LD 335
           LD
Sbjct: 465 LD 466

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria [DNA metabolism, Restriction/modification]. Length = 650

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	476
KOG0964	1200	consensus Structural maintenance of chromosome pro	99.66
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.74
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.73
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.7
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.64
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.63
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.54
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.52
KOG0971	1243	consensus Microtubule-associated protein dynactin	98.22
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	98.17
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.15
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	98.12
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.1
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.06
PRK02224	880	chromosome segregation protein; Provisional	98.05
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.04
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.03
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.02
PHA02562	562	46 endonuclease subunit; Provisional	98.02
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.01
PRK02224	880	chromosome segregation protein; Provisional	97.96
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.96
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.94
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.93
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.9
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	97.88
PRK11637	428	AmiB activator; Provisional	97.86
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	97.83
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	97.82
PRK11637	428	AmiB activator; Provisional	97.8
PF14662	193	CCDC155: Coiled-coil region of CCDC155	97.75
PHA02562	562	46 endonuclease subunit; Provisional	97.74
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.67
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.66
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	97.62
PRK09039	343	hypothetical protein; Validated	97.6
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.6
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	97.53
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.49
KOG0963	629	consensus Transcription factor/CCAAT displacement	97.48
PRK03918	880	chromosome segregation protein; Provisional	97.47
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	97.47
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.46
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	97.45
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.44
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.4
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	97.39
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.39
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	97.39
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.34
PF14662	193	CCDC155: Coiled-coil region of CCDC155	97.28
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.28
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.28
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.28
PRK09039	343	hypothetical protein; Validated	97.24
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	97.2
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	97.19
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.16
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.16
PRK01156	895	chromosome segregation protein; Provisional	97.12
PRK04863	1486	mukB cell division protein MukB; Provisional	97.12
KOG4673	961	consensus Transcription factor TMF, TATA element m	97.12
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.09
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	97.08
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.05
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.03
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	97.02
KOG0964	1200	consensus Structural maintenance of chromosome pro	97.01
PRK04863	1486	mukB cell division protein MukB; Provisional	97.0
KOG4673	961	consensus Transcription factor TMF, TATA element m	96.99
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	96.99
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.97
PRK04778	569	septation ring formation regulator EzrA; Provision	96.97
PRK04778	569	septation ring formation regulator EzrA; Provision	96.97
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.96
COG4942	420	Membrane-bound metallopeptidase [Cell division and	96.95
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	96.93
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	96.9
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.89
COG4372	499	Uncharacterized protein conserved in bacteria with	96.82
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.81
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	96.79
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	96.77
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	96.72
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	96.72
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	96.62
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	96.61
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.58
PRK01156	895	chromosome segregation protein; Provisional	96.56
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.55
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	96.48
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	96.47
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.45
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.43
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	96.43
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.38
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.34
PRK10929	1109	putative mechanosensitive channel protein; Provisi	96.34
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	96.34
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.32
PRK11281	1113	hypothetical protein; Provisional	96.31
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	96.3
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	96.25
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.25
COG4372	499	Uncharacterized protein conserved in bacteria with	96.2
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	96.14
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	96.13
COG4942	420	Membrane-bound metallopeptidase [Cell division and	96.1
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	96.1
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	96.07
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	96.05
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	96.01
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	95.98
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	95.93
KOG0018	1141	consensus Structural maintenance of chromosome pro	95.9
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	95.9
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	95.89
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	95.8
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	95.8
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	95.69
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	95.68
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	95.67
COG5185	622	HEC1 Protein involved in chromosome segregation, i	95.62
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	95.55
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	95.54
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	95.53
KOG0018	1141	consensus Structural maintenance of chromosome pro	95.49
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.48
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	95.46
KOG0979	1072	consensus Structural maintenance of chromosome pro	95.45
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	95.44
PRK10929	1109	putative mechanosensitive channel protein; Provisi	95.43
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	95.43
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	95.43
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	95.42
KOG1103	561	consensus Predicted coiled-coil protein [Function	95.4
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	95.36
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	95.35
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	95.34
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	95.16
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	95.1
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	95.0
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	94.83
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	94.79
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	94.73
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	94.64
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	94.59
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	94.57
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	94.49
PRK15422	79	septal ring assembly protein ZapB; Provisional	94.35
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	94.34
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	94.34
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	94.33
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	94.22
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	94.2
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	94.19
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	94.16
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	94.12
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	94.05
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	94.02
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	94.02
KOG0979	1072	consensus Structural maintenance of chromosome pro	93.91
COG5185	622	HEC1 Protein involved in chromosome segregation, i	93.84
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	93.74
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	93.74
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	93.49
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	93.47
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	93.43
PLN02939	977	transferase, transferring glycosyl groups	93.4
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	93.32
PF15294	278	Leu_zip: Leucine zipper	93.27
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	93.22
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	93.2
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	93.19
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	93.15
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	93.03
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	92.96
KOG0963	629	consensus Transcription factor/CCAAT displacement	92.89
PRK11281	1113	hypothetical protein; Provisional	92.8
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	92.77
PRK10698	222	phage shock protein PspA; Provisional	92.69
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	92.64
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	92.59
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	92.56
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	92.43
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	92.04
KOG4302	660	consensus Microtubule-associated protein essential	92.01
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	91.84
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	91.83
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	91.6
PF10186	302	Atg14: UV radiation resistance protein and autopha	91.6
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	91.57
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	90.86
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	90.85
PRK15422	79	septal ring assembly protein ZapB; Provisional	90.83
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	90.73
KOG2991	330	consensus Splicing regulator [RNA processing and m	90.64
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	90.53
KOG0288	459	consensus WD40 repeat protein TipD [General functi	89.97
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	89.96
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	89.9
KOG4807	593	consensus F-actin binding protein, regulates actin	89.74
KOG1850	391	consensus Myosin-like coiled-coil protein [Cytoske	89.65
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	89.61
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	89.58
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	89.54
PRK10698	222	phage shock protein PspA; Provisional	89.54
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	89.47
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	89.35
PF04912	388	Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit	88.97
PRK10884	206	SH3 domain-containing protein; Provisional	88.93
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	88.77
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	88.68
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	88.64
PF13166	712	AAA_13: AAA domain	88.55
KOG0249	916	consensus LAR-interacting protein and related prot	88.49
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	88.43
KOG1003	205	consensus Actin filament-coating protein tropomyos	88.41
KOG0288	459	consensus WD40 repeat protein TipD [General functi	88.33
PRK10884	206	SH3 domain-containing protein; Provisional	88.26
KOG0993	542	consensus Rab5 GTPase effector Rabaptin-5 [Intrace	88.06
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	87.88
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	87.76
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	87.75
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	87.58
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	87.45
PF13514	1111	AAA_27: AAA domain	87.25
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	87.23
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	87.1
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	86.96
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	86.82
PF10226	195	DUF2216: Uncharacterized conserved proteins (DUF22	86.52
PF02994	370	Transposase_22: L1 transposable element; InterPro:	86.39
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	86.36
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	86.31
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	86.19
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	86.16
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	85.64
PLN02939	977	transferase, transferring glycosyl groups	85.59
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	85.49
KOG4302	660	consensus Microtubule-associated protein essential	85.37
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	85.17
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	84.83
COG2433	652	Uncharacterized conserved protein [Function unknow	84.71
KOG0249	916	consensus LAR-interacting protein and related prot	84.51
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	84.06
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	83.68
KOG1103	561	consensus Predicted coiled-coil protein [Function	83.58
PRK03947	140	prefoldin subunit alpha; Reviewed	83.43
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	83.32
KOG4603	201	consensus TBP-1 interacting protein [Signal transd	83.27
PF15450	531	DUF4631: Domain of unknown function (DUF4631)	83.12
PRK03947	140	prefoldin subunit alpha; Reviewed	83.0
PF13166	712	AAA_13: AAA domain	82.99
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	82.92
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	82.81
KOG0240	607	consensus Kinesin (SMY1 subfamily) [Cytoskeleton]	82.79
COG2433	652	Uncharacterized conserved protein [Function unknow	82.72
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	82.55
PF12709	87	Kinetocho_Slk19: Central kinetochore-associated; I	82.41
KOG2751	447	consensus Beclin-like protein [Signal transduction	82.01
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	81.44
TIGR01010	362	BexC_CtrB_KpsE polysaccharide export inner-membran	81.24
PRK06975	656	bifunctional uroporphyrinogen-III synthetase/uropo	81.13
PRK12704	520	phosphodiesterase; Provisional	81.11
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	81.09
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	81.04
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	80.87
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	80.59
PRK11519	719	tyrosine kinase; Provisional	80.07
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	80.01

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.66  E-value=1e-13  Score=154.29  Aligned_cols=181  Identities=21%  Similarity=0.272  Sum_probs=174.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHH
Q 011839          111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWL  190 (476)
Q Consensus       111 ~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~  190 (476)
                      -+..+.+|..++.++..+|..+..++ .|++++....+++.++++++|++|++++....|.+......+..|...|....
T Consensus       263 ~~d~~~~~~~~i~ele~~l~~l~~ek-eq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~  341 (1200)
T KOG0964|consen  263 VEDESEDLKCEIKELENKLTNLREEK-EQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKK  341 (1200)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            34578899999999999999999999 99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH------------HHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHH
Q 011839          191 QKEAALEQKISQLRDESAALNMKRASLEERLKLL------------EADKDSWTQMES-VSKETIAGLSVDITQLRMQVV  257 (476)
Q Consensus       191 qEla~LepeiekL~~EeasLkQKLasLEeKL~~L------------KaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe  257 (476)
                      .||+.++|+|..|.+++..++.+++.++.+++.|            +.|||.|++.|| .++.-|...+.....|+.++.
T Consensus       342 ~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~  421 (1200)
T KOG0964|consen  342 DELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIE  421 (1200)
T ss_pred             HHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            9999999999999999999999999999999988            899999999999 999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 011839          258 ELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL  292 (476)
Q Consensus       258 ~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~  292 (476)
                      .++..+....++++.+...+.+...++..+..++.
T Consensus       422 ~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~  456 (1200)
T KOG0964|consen  422 DLESELKEKLEEIKELESSINETKGRMEEFDAENT  456 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHH
Confidence            99999999999999999999999999999987764

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.74  E-value=3.2e-05  Score=88.02  Aligned_cols=12  Identities=25%  Similarity=0.567  Sum_probs=9.0

Q ss_pred             CCceeeccCCCc
Q 011839          411 SGEIVQIPLDDK  422 (476)
Q Consensus       411 ~~eiv~~~ld~~  422 (476)
                      .|.+--||||.+
T Consensus       572 ~gr~tflpl~~~  583 (1164)
T TIGR02169       572 AGRATFLPLNKM  583 (1164)
T ss_pred             CCCeeeccHhhc
Confidence            677888898744

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.73  E-value=4.2e-05  Score=89.53  Aligned_cols=169  Identities=25%  Similarity=0.313  Sum_probs=107.4

Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHH
Q 011839          171 REGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDIT  250 (476)
Q Consensus       171 kea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~  250 (476)
                      +-..+++.|..++..+.....++..+......+......+..++..+..++..|..++..|...-..+...|..+...+.
T Consensus       759 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~  838 (1163)
T COG1196         759 RLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIE  838 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444443333334444444444445555555555556556666666667766665566666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 011839          251 QLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDL  330 (476)
Q Consensus       251 sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl~~en~~l~ekvneL  330 (476)
                      .+..++..+...+..+...+..+..++..++..+..+...+... ..+.++++.++..+.+-+.++-.+.+.+.++.+.|
T Consensus       839 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l  917 (1163)
T COG1196         839 ELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKEL-EEEKEELEEELRELESELAELKEEIEKLRERLEEL  917 (1163)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666666666666666666666433 23666888899999999999999999999999888


Q ss_pred             hhhhhhhhhh
Q 011839          331 SVKLDRQSVA  340 (476)
Q Consensus       331 ~~~l~~~~~~  340 (476)
                      +.++......
T Consensus       918 ~~~~~~~~~~  927 (1163)
T COG1196         918 EAKLERLEVE  927 (1163)
T ss_pred             HHHHHHHHHH
Confidence            7766555433

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.70  E-value=3.7e-05  Score=87.01  Aligned_cols=13  Identities=31%  Similarity=0.618  Sum_probs=8.7

Q ss_pred             CCceeeccCCCcc
Q 011839          411 SGEIVQIPLDDKE  423 (476)
Q Consensus       411 ~~eiv~~~ld~~~  423 (476)
                      .|-+.++|||...
T Consensus       570 ~g~~~~l~l~~i~  582 (1179)
T TIGR02168       570 LGRVTFLPLDSIK  582 (1179)
T ss_pred             CCcEEEeeccccc
Confidence            5666678877654

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.64  E-value=0.00048  Score=75.31  Aligned_cols=40  Identities=25%  Similarity=0.401  Sum_probs=34.9

Q ss_pred             ccchhhhHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 011839          298 EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQ  337 (476)
Q Consensus       298 ~~e~~~~qie~a~~~v~kl~~en~~l~ekvneL~~~l~~~  337 (476)
                      +..+|++.+.-|+--=++|..|+++|++-+-.|-.+|+.-
T Consensus       418 el~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~  457 (546)
T PF07888_consen  418 ELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV  457 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6667888888899999999999999999999998877665

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.63  E-value=0.00015  Score=82.10  Aligned_cols=23  Identities=13%  Similarity=-0.156  Sum_probs=13.2

Q ss_pred             CccCCCCCcCCCchhHHHHHHhh
Q 011839          441 AVPLTDAPLIGAPFRLVSFVAKY  463 (476)
Q Consensus       441 ~vp~~dapligapfrlisfva~y  463 (476)
                      .+.|.|=|.-|-..+-+-.|+.|
T Consensus      1113 ~~~~lDE~~~~ld~~~~~~~~~~ 1135 (1179)
T TIGR02168      1113 PFCILDEVDAPLDDANVERFANL 1135 (1179)
T ss_pred             CeEEecCccccccHHHHHHHHHH
Confidence            45667777777665444444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.54  E-value=3.9e-05  Score=89.83  Aligned_cols=273  Identities=17%  Similarity=0.201  Sum_probs=134.3

Q ss_pred             HHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---
Q 011839          148 MQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL---  224 (476)
Q Consensus       148 lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L---  224 (476)
                      ....+.++..|..++........+...++.++..++..+.....++......+..+......+......++..+..+   
T Consensus       294 ~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~  373 (1163)
T COG1196         294 KEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEE  373 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            33566777777777777777777777777777777777777777766665555555555555555555555555522   


Q ss_pred             -------HHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 011839          225 -------EADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT  296 (476)
Q Consensus       225 -------KaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~  296 (476)
                             ..++..|+..++ .....+..++.++.++......+......+..++..+..++..+..++..+...+.... 
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-  452 (1163)
T COG1196         374 LEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELE-  452 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-
Confidence                   223333444444 44455555555555555555555555555555555555555554444454444443221 


Q ss_pred             cccchhhhHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccccccc---cccccccccCCCCCCCCcccccccc
Q 011839          297 SEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIG---SDAVTALTSDTEPMSESSDNMSSLN  373 (476)
Q Consensus       297 ~~~e~~~~qie~a~~~v~kl~~en~~l~ekvneL~~~l~~~~~~~~~ss~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  373 (476)
                      ...+.+..++..+..-+..+...-..+...++++...++-.......+..+.   ....+.++|+++|+.+-   ..+-.
T Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Gv~G~v~~l---i~v~~  529 (1163)
T COG1196         453 EQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAEL---IKVKE  529 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhccCCCccchHHHh---cCcCh
Confidence            1333444444455555555555555555555555554443333221100000   00011144444444332   11111


Q ss_pred             ccccccccccccccCCCccCCCCCCCccccCCcccccCCceeeccCCCccch
Q 011839          374 NRLETQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYSGEIVQIPLDDKEVQ  425 (476)
Q Consensus       374 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eiv~~~ld~~~~~  425 (476)
                       +-++-..+...+..+.+|--+...+.....|=.-...|-..+|||+.+.-.
T Consensus       530 -~y~~Aie~alG~~l~~vVV~~~~~a~~~i~~lk~~~~gr~tflpl~~i~~~  580 (1163)
T COG1196         530 -KYETALEAALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPL  580 (1163)
T ss_pred             -HHHHHHHHHcccccCCeeeCChHHHHHHHHHHhhcCCCccccCchhhhccc
Confidence             222222222233333333222222222223333335888999999987633

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.52  E-value=0.0004  Score=69.32  Aligned_cols=217  Identities=21%  Similarity=0.271  Sum_probs=150.4

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHH
Q 011839          108 EATLEGTVQQLQNECDLYKEKVQATLEETIQ-------QLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIA  180 (476)
Q Consensus       108 e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIk-------QLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIk  180 (476)
                      ..+++..|..|+..|+.+... .+.++-.+.       +++..+.........++..|..|+...+.....+..|+.+|.
T Consensus        49 ~~~ye~el~~lr~~id~~~~e-ka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~  127 (312)
T PF00038_consen   49 KEMYEEELRELRRQIDDLSKE-KARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQ  127 (312)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHhHHhhhhHHHH-hhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHH
Confidence            556788888888888877766 333333334       444444455667778888999999999999999999999999


Q ss_pred             HHHHHHH----HHHHHHHHHHHHHH-HHHHH-----HHHHHHHHHhH----HHHHHHHHHhhhhHhhhhh-chHHHHhhh
Q 011839          181 NLQSEKE----FWLQKEAALEQKIS-QLRDE-----SAALNMKRASL----EERLKLLEADKDSWTQMES-VSKETIAGL  245 (476)
Q Consensus       181 qLe~EIs----~~~qEla~Lepeie-kL~~E-----easLkQKLasL----EeKL~~LKaERD~WLkkEI-sLke~IssL  245 (476)
                      .|+.++.    .|.+++..|..++. ...-+     ...|...+..+    +......+.+=+.|.+..+ .+.......
T Consensus       128 ~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~  207 (312)
T PF00038_consen  128 SLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKS  207 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhccccccccccccccc
Confidence            9999888    45566676666663 11111     12223333332    3333333677788888888 888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh---hcccchhhhHHHHHHhHHHHHHHHHHH
Q 011839          246 SVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHA---TSEQKDFSTQIEAAGALIDKLITENIE  322 (476)
Q Consensus       246 ~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~---~~~~e~~~~qie~a~~~v~kl~~en~~  322 (476)
                      ...+..++.++..+...+..+..++..|+.....|..++..++.......   ......+..++..+..-+..++.+..+
T Consensus       208 ~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~  287 (312)
T PF00038_consen  208 SEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQE  287 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888876664321   124556777777778888888888888


Q ss_pred             HHH
Q 011839          323 LVE  325 (476)
Q Consensus       323 l~e  325 (476)
                      |+.
T Consensus       288 Ll~  290 (312)
T PF00038_consen  288 LLD  290 (312)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            775

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.22  E-value=0.00064  Score=77.33  Aligned_cols=91  Identities=22%  Similarity=0.299  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011839          138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL  217 (476)
Q Consensus       138 kQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasL  217 (476)
                      +|++.=+..++++.|.++-.|++-+-+..-....+..+...+..+..-|....-...--+.+.+.|+.+...++.++.++
T Consensus       265 eqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~del  344 (1243)
T KOG0971|consen  265 EQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDEL  344 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777777777777777777777777666666666666667777777777666666666777788888888888888888


Q ss_pred             HHHHHHHHHhh
Q 011839          218 EERLKLLEADK  228 (476)
Q Consensus       218 EeKL~~LKaER  228 (476)
                      +-.+..|++|-
T Consensus       345 etdlEILKaEm  355 (1243)
T KOG0971|consen  345 ETDLEILKAEM  355 (1243)
T ss_pred             HHHHHHHHHHH
Confidence            88888885543

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=98.17  E-value=0.0023  Score=71.15  Aligned_cols=234  Identities=21%  Similarity=0.258  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH--------HHHHhHHHHHHHHHHHHHHHH
Q 011839           77 ERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKE--------KVQATLEETIQQLQRQNDLRM  148 (476)
Q Consensus        77 ~~~~~~q~e~~~~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkq--------kLE~llqEkIkQLq~E~~d~l  148 (476)
                      |+.+|=||-+  -+.+.+..|++|++-.+..---||..|.+|+.++..-..        ..+..+++.+++|+.+++.+.
T Consensus        23 e~a~~qqr~~--qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~  100 (617)
T PF15070_consen   23 ESAQWQQRMQ--QMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLE  100 (617)
T ss_pred             HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            6677777766  778888889999998887777777777777766653221        223334444555555555554


Q ss_pred             HHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011839          149 QKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW---LQKEAALEQKISQLRDESAALNMKRASLEERLKLLE  225 (476)
Q Consensus       149 Qk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~---~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LK  225 (476)
                      .+....-..-..|..-+....++-..++.++..++......   +..+..=+.-+......|..|+++|.+++.....|-
T Consensus       101 ~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~lt  180 (617)
T PF15070_consen  101 EQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLT  180 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            33222111111221111222233333444444444443322   222333344567778889999999999999888886


Q ss_pred             Hhhhh---HhhhhhchHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccch
Q 011839          226 ADKDS---WTQMESVSKETIA-GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKD  301 (476)
Q Consensus       226 aERD~---WLkkEIsLke~Is-sL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~  301 (476)
                      .++-.   -|+.|    ..+. .+...+..|+.++..++..+...+.+.+.|..+-+.+...++.-...+ +..+++.+.
T Consensus       181 ne~~elt~~lq~E----q~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~-q~l~~e~e~  255 (617)
T PF15070_consen  181 NENMELTSALQSE----QHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAY-QQLASEKEE  255 (617)
T ss_pred             HhhhHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            66533   22333    2222 344444455555555555555555555555555554444444332211 223344555


Q ss_pred             hhhHHHHHHhHHHHHH
Q 011839          302 FSTQIEAAGALIDKLI  317 (476)
Q Consensus       302 ~~~qie~a~~~v~kl~  317 (476)
                      |..|+-.-+-+++.|-
T Consensus       256 L~~q~l~Qtql~d~lq  271 (617)
T PF15070_consen  256 LHKQLLQQTQLMDRLQ  271 (617)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5544444444444443

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.15  E-value=0.0051  Score=75.48  Aligned_cols=200  Identities=22%  Similarity=0.243  Sum_probs=100.2

Q ss_pred             HHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHH
Q 011839           90 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI  169 (476)
Q Consensus        90 ~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~  169 (476)
                      ++.-++.+..+.+-.-.+...++..-+.++.++..++..++..-... ..++.+......++-.+++.|..+++.+....
T Consensus       906 le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~-~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~  984 (1930)
T KOG0161|consen  906 LEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTL-QKLELEKNAAENKLKNLEEEINSLDENISKLS  984 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555556666665666666677777777777766666655433333 55666666666666666666666666666666


Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHhhhhHhhhhh-chHHH
Q 011839          170 QREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA-------SLEERLKLLEADKDSWTQMES-VSKET  241 (476)
Q Consensus       170 Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLa-------sLEeKL~~LKaERD~WLkkEI-sLke~  241 (476)
                      ..+..+++.+.+|...+.....+...+.....+|......+...+.       .++...+.|-.+= .-++..+ .++..
T Consensus       985 kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el-~~~~e~~~~~~~~ 1063 (1930)
T KOG0161|consen  985 KEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGEL-KDLQESIEELKKQ 1063 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHH
Confidence            6666666666666666664444433333333332222222222221       2222222221111 1122233 34444


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011839          242 IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK  291 (476)
Q Consensus       242 IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei  291 (476)
                      +..+...+.....++..+...+......+.++...|.+|+.++..|.++.
T Consensus      1064 ~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~l 1113 (1930)
T KOG0161|consen 1064 KEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEEL 1113 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444445555555555555544444

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=98.12  E-value=0.002  Score=71.65  Aligned_cols=191  Identities=24%  Similarity=0.329  Sum_probs=136.1

Q ss_pred             HHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHH-
Q 011839           90 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLH-  168 (476)
Q Consensus        90 ~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~-  168 (476)
                      +.|+|++|+-|.|-.          ..+|+.+...+.+++.- +.+.+..|..+.+..+..+-.+|-.|.+|+.....- 
T Consensus         2 l~e~l~qlq~Erd~y----------a~~lk~e~a~~qqr~~q-mseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~   70 (617)
T PF15070_consen    2 LMESLKQLQAERDQY----------AQQLKEESAQWQQRMQQ-MSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP   70 (617)
T ss_pred             hHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence            468899999998873          33455555555555433 333336677777777788888888888888765432 


Q ss_pred             --------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHhhhhHhhhhh-
Q 011839          169 --------IQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL---EADKDSWTQMES-  236 (476)
Q Consensus       169 --------~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L---KaERD~WLkkEI-  236 (476)
                              ...+..|++++..|+.++..+..++.......+.|...+...+.+|..+|..++.+   ..++..+| ..+ 
T Consensus        71 ~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLL-e~lq  149 (617)
T PF15070_consen   71 PPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLL-EQLQ  149 (617)
T ss_pred             CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhc
Confidence                    23345688888999999998888887777777888877888888999999999988   44566544 356 


Q ss_pred             chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhhhhhhhhhh
Q 011839          237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQEN--------------RQLKENVSSLRSQLSSDESKKL  292 (476)
Q Consensus       237 sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEI--------------q~LkeqIseLqs~lqeLeeei~  292 (476)
                      +=+..|++.-..+..|..++..|+...-.+..++              ..|..++..++..+.+++..+.
T Consensus       150 sdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le  219 (617)
T PF15070_consen  150 SDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLE  219 (617)
T ss_pred             ccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6677888888888888888888888666666555              3556666666777777766653

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.10  E-value=0.0048  Score=67.67  Aligned_cols=82  Identities=27%  Similarity=0.351  Sum_probs=39.2

Q ss_pred             hhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHH
Q 011839           98 RNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEM  177 (476)
Q Consensus        98 ~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEe  177 (476)
                      ..|+.-..+.-..|++.+.+|+.++..+...|.....+- .+|+.....+......+......|...+....++-..|++
T Consensus       149 qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~-e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEe  227 (546)
T PF07888_consen  149 QKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEM-EQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEE  227 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555566666666666666666654433333 5555555544444444444444444433333333333333


Q ss_pred             HHH
Q 011839          178 NIA  180 (476)
Q Consensus       178 qIk  180 (476)
                      .|.
T Consensus       228 di~  230 (546)
T PF07888_consen  228 DIK  230 (546)
T ss_pred             HHH
Confidence            333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.06  E-value=0.0048  Score=60.52  Aligned_cols=68  Identities=19%  Similarity=0.293  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHH
Q 011839          114 TVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANL  182 (476)
Q Consensus       114 ~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqL  182 (476)
                      .|..|+.+++.....+.. +...++........+-..++.+.-+|..|...++...++-.....+|..+
T Consensus         2 K~~~l~~eld~~~~~~~~-~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~   69 (237)
T PF00261_consen    2 KIQQLKDELDEAEERLEE-AEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEA   69 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            344455555555444333 22222444444444444444444444444444444444333333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK02224 chromosome segregation protein; Provisional

Probab=98.05  E-value=0.005  Score=69.69  Aligned_cols=19  Identities=21%  Similarity=0.333  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 011839          111 LEGTVQQLQNECDLYKEKV  129 (476)
Q Consensus       111 ~Ek~IkqLqeEi~~lkqkL  129 (476)
                      ++..+..++.++..+...+
T Consensus       204 l~~~l~~~~~~l~el~~~i  222 (880)
T PRK02224        204 LHERLNGLESELAELDEEI  222 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444445555555444443

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.04  E-value=0.0079  Score=60.15  Aligned_cols=98  Identities=21%  Similarity=0.334  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHHHHHHhHHHHHH
Q 011839           86 AMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEET------IQQLQRQNDLRMQKEATLEETIK  159 (476)
Q Consensus        86 ~~~~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEk------IkQLq~E~~d~lQk~A~LE~tIK  159 (476)
                      .|.+++.+|+.|+...|.....-+-++-.+..|..++..++.+++.....+      |..+..+.+........++..|.
T Consensus        48 ~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~  127 (312)
T PF00038_consen   48 IKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQ  127 (312)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHH
Confidence            477899999999999999888889999999999999999988877655444      44445556666667777888888


Q ss_pred             HHHhhhhHHHHHhhhHHHHHHHHHHHH
Q 011839          160 QLRNQNDLHIQREGGLEMNIANLQSEK  186 (476)
Q Consensus       160 dLks~~es~~Qkea~LEeqIkqLe~EI  186 (476)
                      .|+.++....   ..+++.|..|+..+
T Consensus       128 ~L~eEl~fl~---~~heeEi~~L~~~~  151 (312)
T PF00038_consen  128 SLKEELEFLK---QNHEEEIEELREQI  151 (312)
T ss_dssp             HHHHHHHHHH---HHHHHHHHTTSTT-
T ss_pred             HHHHHHHHHH---hhhhhhhhhhhhcc
Confidence            8877665422   22444455554433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.03  E-value=0.0092  Score=72.66  Aligned_cols=241  Identities=21%  Similarity=0.289  Sum_probs=120.6

Q ss_pred             HHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHH
Q 011839           89 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLH  168 (476)
Q Consensus        89 ~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~  168 (476)
                      -++--|-+|++.-+.....-..++..+..|..++.....+ ...+.-.|.-+......+.+....++..-+.|...++..
T Consensus        56 ~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~-~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~  134 (1822)
T KOG4674|consen   56 ELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSE-RSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQ  134 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555555555555555555555555555544444 222223333333444444444444443333333333333


Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHH
Q 011839          169 IQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSV  247 (476)
Q Consensus       169 ~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~  247 (476)
                      ..+-..+...++.|...+.+.-+.+..+..........-..+.-++..++.+...|+.+ ..||..+. ...+.+..+..
T Consensus       135 ~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~-~~wL~~eL~~~~ekll~~~r  213 (1822)
T KOG4674|consen  135 KAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESE-NKWLSRELSKVNEKLLSLRR  213 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHh
Confidence            33333333444444444444444444444444444444444444444444444444332 46777777 66666666666


Q ss_pred             H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh---hhcccchhhhHHHHHHhHHHHHHHHH
Q 011839          248 D----ITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH---ATSEQKDFSTQIEAAGALIDKLITEN  320 (476)
Q Consensus       248 ~----i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~---~~~~~e~~~~qie~a~~~v~kl~~en  320 (476)
                      +    +..|..++..+..+...+...++.|+.+...|...|+.+-.+++.+   ..+..+.|.-.+.+.|.|++=+-..=
T Consensus       214 e~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~ks~~  293 (1822)
T KOG4674|consen  214 EHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLNELWKSKL  293 (1822)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6    6666666666666777777777777777766666666666555433   22344445555555555555444433


Q ss_pred             HHHHHhhhhhh
Q 011839          321 IELVEKVNDLS  331 (476)
Q Consensus       321 ~~l~ekvneL~  331 (476)
                      -++..+|++|.
T Consensus       294 ee~~~~~~el~  304 (1822)
T KOG4674|consen  294 EELSHEVAELQ  304 (1822)
T ss_pred             HHHHHHHHHHH
Confidence            44444444443

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.02  E-value=0.011  Score=72.70  Aligned_cols=134  Identities=20%  Similarity=0.233  Sum_probs=72.1

Q ss_pred             HHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011839          144 NDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKL  223 (476)
Q Consensus       144 ~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~  223 (476)
                      +.........+|..++++..+++....+...++.+.+.++.++......+..++..+.++..+......++..++..+..
T Consensus       896 ~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~  975 (1930)
T KOG0161|consen  896 LERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINS  975 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334456666666777777776666666666666666666666666666666666666666666666666666666555


Q ss_pred             HHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          224 LEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS  278 (476)
Q Consensus       224 LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIs  278 (476)
                      +..--+. |.+|- .+++.+..+..++.....++..|...+.-++..++.+...+.
T Consensus       976 ~~e~~~k-L~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le 1030 (1930)
T KOG0161|consen  976 LDENISK-LSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLE 1030 (1930)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4222222 22222 344444444444444444444444444444444444444444

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.02  E-value=0.0032  Score=67.37  Aligned_cols=90  Identities=17%  Similarity=0.201  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhH--hhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          199 KISQLRDESAALNMKRASLEERLKLLEADKDSW--TQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKE  275 (476)
Q Consensus       199 eiekL~~EeasLkQKLasLEeKL~~LKaERD~W--LkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~Lke  275 (476)
                      ++..|.+....+..++..++..+..++...+.+  +...+ .++..+...+..+.++..+...++.++..|......+..
T Consensus       300 ~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~  379 (562)
T PHA02562        300 RITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAE  379 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHH
Confidence            344444455555555555555555332222211  22333 444444444444444444444444444444443333333


Q ss_pred             HHHHHHHhhhhhh
Q 011839          276 NVSSLRSQLSSDE  288 (476)
Q Consensus       276 qIseLqs~lqeLe  288 (476)
                      .+..+..++.++.
T Consensus       380 ~l~~l~~~l~~~~  392 (562)
T PHA02562        380 ELAKLQDELDKIV  392 (562)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.01  E-value=0.0049  Score=71.60  Aligned_cols=151  Identities=20%  Similarity=0.254  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011839          138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL  217 (476)
Q Consensus       138 kQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasL  217 (476)
                      +.........-++.+++|..|..+..+......+=..+-+.+..+..++.....+.......|.+++.....++..++.+
T Consensus       305 ~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~  384 (1074)
T KOG0250|consen  305 EEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADL  384 (1074)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333444444444444333333333333333333444444444444444444444444444444444444


Q ss_pred             HHHH-HHH------HHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011839          218 EERL-KLL------EADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE  288 (476)
Q Consensus       218 EeKL-~~L------KaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLe  288 (476)
                      ++.. +.+      -+.+-.||++|+ .++..+.+|......+..++..-++++..+...|.+++.++..-...+..|+
T Consensus       385 ~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk  463 (1074)
T KOG0250|consen  385 EKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLK  463 (1074)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444 222      122223444444 4444444444444444444444444444444444444444444443333333

>PRK02224 chromosome segregation protein; Provisional

Probab=97.96  E-value=0.01  Score=67.17  Aligned_cols=84  Identities=19%  Similarity=0.223  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHH
Q 011839          179 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVV  257 (476)
Q Consensus       179 IkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe  257 (476)
                      ..+|...+..+...+..+..++..+......+...+..++..+..|+.+++. +.+++ .+...+..+...+..+..++.
T Consensus       316 ~~~l~~k~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~-l~~~~~~~~~~l~~~~~~l~~l~~el~  394 (880)
T PRK02224        316 REELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAE-LESELEEAREAVEDRREEIEELEEEIE  394 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444455555554555555666666666666554443 44454 666666666666666666665


Q ss_pred             HHHHHH
Q 011839          258 ELEESR  263 (476)
Q Consensus       258 ~Leee~  263 (476)
                      .+...+
T Consensus       395 el~~~l  400 (880)
T PRK02224        395 ELRERF  400 (880)
T ss_pred             HHHHHH
Confidence            554433

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.96  E-value=0.006  Score=70.90  Aligned_cols=187  Identities=22%  Similarity=0.265  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHH---Hhhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          135 ETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQ---REGG--------LEMNIANLQSEKEFWLQKEAALEQKISQL  203 (476)
Q Consensus       135 EkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Q---kea~--------LEeqIkqLe~EIs~~~qEla~LepeiekL  203 (476)
                      +.|.+...+.....++...+++.+..+......+.+   -++.        -..+++.+...|.....+.+++..+++..
T Consensus       228 ~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~  307 (1074)
T KOG0250|consen  228 ELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEK  307 (1074)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555666666666666666666654443333322   2222        34566777777778888889999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011839          204 RDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQ  283 (476)
Q Consensus       204 ~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~  283 (476)
                      ......+.+++.+.|+++..+..+=+.       -.+.|.+..+....++.++..++..+......++.++..++.+..+
T Consensus       308 ~~k~~~~r~k~teiea~i~~~~~e~~~-------~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~  380 (1074)
T KOG0250|consen  308 QGKIEEARQKLTEIEAKIGELKDEVDA-------QDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQ  380 (1074)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHhhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988654443       3347777777778888888888888888888888888888888888


Q ss_pred             hhhhhhhhhhhhhcccchhhhHHHHHHhHHHHHHHHHHHHHHhhh
Q 011839          284 LSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVN  328 (476)
Q Consensus       284 lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl~~en~~l~ekvn  328 (476)
                      |..++...-....++.+.+...++....-|+++-..+..|.++-|
T Consensus       381 I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~  425 (1074)
T KOG0250|consen  381 IADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELN  425 (1074)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888887774443443333333333334444444444444444333

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.94  E-value=0.0065  Score=66.69  Aligned_cols=78  Identities=21%  Similarity=0.273  Sum_probs=35.8

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhc---ccchhhhHHHHHHhHHHHH
Q 011839          240 ETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATS---EQKDFSTQIEAAGALIDKL  316 (476)
Q Consensus       240 e~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~---~~e~~~~qie~a~~~v~kl  316 (476)
                      +.+..+...+..|+.++..|+..-..|...|+.|+-+++       .-...+-.+.+.   +-..|+.+..++-.-+++|
T Consensus       296 EEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~-------e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~L  368 (546)
T KOG0977|consen  296 EELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLD-------EDQRSFEQALNDKDAEIAKMREECQQLSVELQKL  368 (546)
T ss_pred             HHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhh-------hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            444455555555555555555555555555555544444       221111111110   3335555555555555555


Q ss_pred             HHHHHHHH
Q 011839          317 ITENIELV  324 (476)
Q Consensus       317 ~~en~~l~  324 (476)
                      +-=++.|-
T Consensus       369 lD~ki~Ld  376 (546)
T KOG0977|consen  369 LDTKISLD  376 (546)
T ss_pred             hchHhHHH
Confidence            55444444

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.93  E-value=0.01  Score=67.04  Aligned_cols=35  Identities=29%  Similarity=0.202  Sum_probs=28.0

Q ss_pred             ccchhhhHHHHHHhHHHHHHHHHHHHHHhhhhhhh
Q 011839          298 EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSV  332 (476)
Q Consensus       298 ~~e~~~~qie~a~~~v~kl~~en~~l~ekvneL~~  332 (476)
                      -.-+-+.|+|.+...+.+.=.|=.+|+-|+.+|-+
T Consensus       623 aLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a  657 (697)
T PF09726_consen  623 ALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA  657 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45566789999999998888877788888888844

; GO: 0016021 integral to membrane

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.90  E-value=0.01  Score=58.29  Aligned_cols=6  Identities=33%  Similarity=0.390  Sum_probs=2.1

Q ss_pred             HHHHHH
Q 011839          256 VVELEE  261 (476)
Q Consensus       256 Ve~Lee  261 (476)
                      +...+.
T Consensus       185 lkeaE~  190 (237)
T PF00261_consen  185 LKEAEN  190 (237)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=97.88  E-value=0.017  Score=70.51  Aligned_cols=39  Identities=13%  Similarity=0.249  Sum_probs=25.4

Q ss_pred             ccchhhhHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhh
Q 011839          298 EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDR  336 (476)
Q Consensus       298 ~~e~~~~qie~a~~~v~kl~~en~~l~ekvneL~~~l~~  336 (476)
                      ..+....+|+.+.....++++.+..+-...+.|.+++..
T Consensus       838 ~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~e  876 (1822)
T KOG4674|consen  838 QLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSE  876 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666777777777777777776666555555554433

>PRK11637 AmiB activator; Provisional

Probab=97.86  E-value=0.011  Score=62.34  Aligned_cols=18  Identities=11%  Similarity=0.263  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 011839          112 EGTVQQLQNECDLYKEKV  129 (476)
Q Consensus       112 Ek~IkqLqeEi~~lkqkL  129 (476)
                      ++.+++++.+|..+..++
T Consensus        46 ~~~l~~l~~qi~~~~~~i   63 (428)
T PRK11637         46 RDQLKSIQQDIAAKEKSV   63 (428)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344444444444444443

>TIGR00606 rad50 rad50

Probab=97.83  E-value=0.029  Score=67.04  Aligned_cols=19  Identities=11%  Similarity=0.055  Sum_probs=13.3

Q ss_pred             ccCccCCCCCcCCCchhHH
Q 011839          439 VAAVPLTDAPLIGAPFRLV  457 (476)
Q Consensus       439 ~~~vp~~dapligapfrli  457 (476)
                      ...|.|.|-|.-|-...-+
T Consensus      1223 ~~~il~lDEPt~~lD~~~~ 1241 (1311)
T TIGR00606      1223 NCGIIALDEPTTNLDRENI 1241 (1311)
T ss_pred             CCCEEEeeCCcccCCHHHH
Confidence            4678888888887764433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00606 rad50 rad50

Probab=97.82  E-value=0.024  Score=67.71  Aligned_cols=72  Identities=14%  Similarity=0.058  Sum_probs=44.0

Q ss_pred             HHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011839          149 QKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLE  225 (476)
Q Consensus       149 Qk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LK  225 (476)
                      +....++-.|+.|.........     ...+..|+.++.....++..+..++..+..+...+..++..|+.++..+.
T Consensus       799 ~ei~~l~~qie~l~~~l~~~~~-----~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~  870 (1311)
T TIGR00606       799 MELKDVERKIAQQAAKLQGSDL-----DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELK  870 (1311)
T ss_pred             HHHHHHHHHHHHHHHHhccccc-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444333222     12566777777777777777777777777777777777777766666663

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK11637 AmiB activator; Provisional

Probab=97.80  E-value=0.016  Score=61.24  Aligned_cols=74  Identities=16%  Similarity=0.111  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Q 011839          117 QLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQ  191 (476)
Q Consensus       117 qLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~q  191 (476)
                      .++++++.+.++++.+..+. .+++.+.....+.+..++..|..+...+....+.-..++.+|..++.+|.....
T Consensus        44 ~~~~~l~~l~~qi~~~~~~i-~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~  117 (428)
T PRK11637         44 DNRDQLKSIQQDIAAKEKSV-RQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQ  117 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555543322222 444444444444444444444444444333333333333333333333333333

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=97.75  E-value=0.014  Score=56.70  Aligned_cols=173  Identities=21%  Similarity=0.239  Sum_probs=101.5

Q ss_pred             HHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHH
Q 011839           92 ETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQR  171 (476)
Q Consensus        92 eti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qk  171 (476)
                      --=++|..|+-..-+.=.++++.-.+|.++|..+...+..+.            ..++.--.++..+.+|+....+....
T Consensus        15 ~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q------------qal~~aK~l~eEledLk~~~~~lEE~   82 (193)
T PF14662_consen   15 LNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ------------QALQKAKALEEELEDLKTLAKSLEEE   82 (193)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334556666666656666666666777777777776654421            34455556677777777777777777


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHH
Q 011839          172 EGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDIT  250 (476)
Q Consensus       172 ea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~  250 (476)
                      ...|..+-++++.+...       |..+|..|.+++..+......+..+...|..++.. |+..+ .-+.-+......+.
T Consensus        83 ~~~L~aq~rqlEkE~q~-------L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~-Lq~Ql~~~e~l~~~~da~l~  154 (193)
T PF14662_consen   83 NRSLLAQARQLEKEQQS-------LVAEIETLQEENGKLLAERDGLKKRSKELATEKAT-LQRQLCEFESLICQRDAILS  154 (193)
T ss_pred             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHH
Confidence            77777777777766665       44455555566655555555665555555554433 34444 44444445544555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011839          251 QLRMQVVELEESRNNLLQENRQLKENVSSLRSQL  284 (476)
Q Consensus       251 sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~l  284 (476)
                      .-..++..|..-+..+..-++.|+-.++.|..++
T Consensus       155 e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql  188 (193)
T PF14662_consen  155 ERTQQIEELKKTIEEYRSITEELRLEKSRLEEQL  188 (193)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555555555554444

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.74  E-value=0.021  Score=61.19  Aligned_cols=9  Identities=11%  Similarity=0.209  Sum_probs=4.2

Q ss_pred             CccCCCCCc
Q 011839          441 AVPLTDAPL  449 (476)
Q Consensus       441 ~vp~~dapl  449 (476)
                      .+.|.|-|.
T Consensus       498 ~~lilDEp~  506 (562)
T PHA02562        498 NLLILDEVF  506 (562)
T ss_pred             CeEEEeccc
Confidence            344445554

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.67  E-value=0.1  Score=60.82  Aligned_cols=52  Identities=15%  Similarity=0.203  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q 011839          113 GTVQQLQNECDLYKEKVQATLEET-----IQQLQRQNDLRMQKEATLEETIKQLRNQN  165 (476)
Q Consensus       113 k~IkqLqeEi~~lkqkLE~llqEk-----IkQLq~E~~d~lQk~A~LE~tIKdLks~~  165 (476)
                      ..+.+|..+++...++|- +.+.+     ..++.+++..+...+-+++..|++.....
T Consensus       708 ~kf~~l~~ql~l~~~~l~-l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~  764 (1174)
T KOG0933|consen  708 QKFRDLKQQLELKLHELA-LLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERAL  764 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555432 12222     12344444444444444444444444433

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.66  E-value=0.023  Score=66.67  Aligned_cols=68  Identities=18%  Similarity=0.259  Sum_probs=37.4

Q ss_pred             HHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 011839           89 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQ  164 (476)
Q Consensus        89 ~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~  164 (476)
                      .++.-+-+....-+.|.-...-+++.+.+|+..+..+...++        .+..+...+.-.++.++-.|++++..
T Consensus       782 ~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~--------~~~~~~k~~~~~~~~l~~~i~~~E~~  849 (1293)
T KOG0996|consen  782 KLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLE--------KLTASVKRLAELIEYLESQIAELEAA  849 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444544445566677777777776666543        34444444555566666666666554

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=97.62  E-value=0.091  Score=61.15  Aligned_cols=49  Identities=20%  Similarity=0.197  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhh
Q 011839          196 LEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGL  245 (476)
Q Consensus       196 LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL  245 (476)
                      |.-+++.|.+....+.+.++.++..-..|+-|++.++ .|+ .......+.
T Consensus       413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~-~e~~t~~~s~~rq  462 (1195)
T KOG4643|consen  413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLL-EETSTVTRSLSRQ  462 (1195)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHH
Confidence            7778888888888888888888888888888888854 344 544444443

>PRK09039 hypothetical protein; Validated

Probab=97.60  E-value=0.0052  Score=63.72  Aligned_cols=123  Identities=20%  Similarity=0.231  Sum_probs=66.7

Q ss_pred             HHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhc
Q 011839          158 IKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESV  237 (476)
Q Consensus       158 IKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIs  237 (476)
                      |.+|-+-+....+....++.+|..|+..+.......+.++..|..+......+..++..++.++..++....       .
T Consensus        62 Ia~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~s-------e  134 (343)
T PRK09039         62 IAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSA-------R  134 (343)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHH-------H
Confidence            344555555555555555555555555555555555555555554433334444455555444443332111       3


Q ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011839          238 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD  287 (476)
Q Consensus       238 Lke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeL  287 (476)
                      ....|..|+.+|..|+.|+..|+..+...+......+.+|..+..+|...
T Consensus       135 ~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a  184 (343)
T PRK09039        135 ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA  184 (343)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566666666666666666666666666666666666666655555444

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.60  E-value=0.075  Score=61.30  Aligned_cols=166  Identities=16%  Similarity=0.174  Sum_probs=76.8

Q ss_pred             hhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHH
Q 011839          103 SHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANL  182 (476)
Q Consensus       103 ~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqL  182 (476)
                      |-||-|.+- +.-.++-..+..+.+.|...-++. +++++-.+.+.+..+.....|.=+-=..++...+-..|+..+..+
T Consensus       260 mkiqleqlq-EfkSkim~qqa~Lqrel~raR~e~-keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~l  337 (1243)
T KOG0971|consen  260 MKIQLEQLQ-EFKSKIMEQQADLQRELKRARKEA-KEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEAL  337 (1243)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            456666543 333444455555555555555555 556555555555555444444433333333333333333333333


Q ss_pred             HHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhH
Q 011839          183 QSEKEFWLQKEAALEQK---------------ISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLS  246 (476)
Q Consensus       183 e~EIs~~~qEla~Lepe---------------iekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~  246 (476)
                      +..++...-.+.-|+.+               +.+|...|.-|+..+..|    +.|-+    --+..+ .+.+.+..++
T Consensus       338 kEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrL----RDlsA----~ek~d~qK~~kelE~k~  409 (1243)
T KOG0971|consen  338 KERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRL----RDLSA----SEKQDHQKLQKELEKKN  409 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHH----Hhcch----HHHHHHHHHHHHHHHHh
Confidence            33333333333333332               333444444444333322    22200    001222 3444455555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          247 VDITQLRMQVVELEESRNNLLQENRQLKENVS  278 (476)
Q Consensus       247 ~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIs  278 (476)
                      .++..|...-+.|+.+++..+..|..|+++|+
T Consensus       410 sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD  441 (1243)
T KOG0971|consen  410 SELEELRRQKERLSRELDQAESTIADLKEQVD  441 (1243)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555566666666666666666666666655

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=97.53  E-value=0.17  Score=57.92  Aligned_cols=146  Identities=18%  Similarity=0.173  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHH
Q 011839           77 ERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQAT----LEETIQQLQRQNDLRMQKEA  152 (476)
Q Consensus        77 ~~~~~~q~e~~~~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~l----lqEkIkQLq~E~~d~lQk~A  152 (476)
                      |..|++|-.| ++++|+.+.|+--|...-..-.-.|..++.++++++.+++..-..    -+.+ +=|..++-.+...++
T Consensus       256 E~d~~lq~sa-k~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqat-kylh~enmkltrqka  333 (1265)
T KOG0976|consen  256 EQDMDLQASA-KEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQAT-KYLHLENMKLTRQKA  333 (1265)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHH
Confidence            7899999998 789999999988887766666667778888888888888774333    3344 557778888888888


Q ss_pred             hHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011839          153 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL  224 (476)
Q Consensus       153 ~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L  224 (476)
                      .+.|.+++-+-..++--.+...|+.+-..+....-+..+++...+.++..|...-+.+.++++.+..++-.|
T Consensus       334 dirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~  405 (1265)
T KOG0976|consen  334 DIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRL  405 (1265)
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            888888887777666666666666655555555555555556666666666666666666666555555444

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.49  E-value=0.12  Score=61.48  Aligned_cols=38  Identities=24%  Similarity=0.222  Sum_probs=20.0

Q ss_pred             HHhhhhHhhhhh---ch-HHHHhhhHHHHHHHHHHHHHHHHH
Q 011839          225 EADKDSWTQMES---VS-KETIAGLSVDITQLRMQVVELEES  262 (476)
Q Consensus       225 KaERD~WLkkEI---sL-ke~IssL~~~i~sLq~QVe~Leee  262 (476)
                      ..+-+.|.+.|+   .. ...|..++..+..|..++...+..
T Consensus       752 ~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~  793 (1201)
T PF12128_consen  752 LKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEER  793 (1201)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444455555554   11 235566666666666666655553

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=97.48  E-value=0.098  Score=58.21  Aligned_cols=113  Identities=18%  Similarity=0.161  Sum_probs=54.4

Q ss_pred             hhhHhhHHHHHHHHHHHHHHHHHHHHHhHH---------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHH
Q 011839          105 IQKEATLEGTVQQLQNECDLYKEKVQATLE---------------ETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI  169 (476)
Q Consensus       105 ~~~e~~~Ek~IkqLqeEi~~lkqkLE~llq---------------EkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~  169 (476)
                      ++-.-..+-.|+.|.+.++.+.+.+.....               ++-..|.++....-.+.-.++.+|..|+..+..+.
T Consensus       137 l~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~  216 (629)
T KOG0963|consen  137 LADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQ  216 (629)
T ss_pred             HhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            444445555666666666666555544433               22222333333333344444445555544444443


Q ss_pred             HHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011839          170 QREGGLEMN----IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL  217 (476)
Q Consensus       170 Qkea~LEeq----IkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasL  217 (476)
                      -....+...    ..-...++.....+++.-...+..|..+..+|..+++..
T Consensus       217 ~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~  268 (629)
T KOG0963|consen  217 NELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKA  268 (629)
T ss_pred             hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333333333    444444555555555555555555555555555555533

>PRK03918 chromosome segregation protein; Provisional

Probab=97.47  E-value=0.22  Score=56.43  Aligned_cols=6  Identities=17%  Similarity=0.601  Sum_probs=2.8

Q ss_pred             HHHHHH
Q 011839           77 ERQHLL   82 (476)
Q Consensus        77 ~~~~~~   82 (476)
                      +|..+|
T Consensus       146 ~r~~~~  151 (880)
T PRK03918        146 SREKVV  151 (880)
T ss_pred             HHHHHH
Confidence            454444

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=97.47  E-value=0.12  Score=59.37  Aligned_cols=35  Identities=31%  Similarity=0.230  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          181 NLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA  215 (476)
Q Consensus       181 qLe~EIs~~~qEla~LepeiekL~~EeasLkQKLa  215 (476)
                      .|+..|+.+..+.+.++.-+..|.++...|...+.
T Consensus       228 alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~  262 (775)
T PF10174_consen  228 ALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGE  262 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            35555666666666665555555555555555444

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.46  E-value=0.036  Score=61.08  Aligned_cols=32  Identities=22%  Similarity=0.345  Sum_probs=13.9

Q ss_pred             HHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHH
Q 011839           94 VKHLRNERESHIQKEATLEGTVQQLQNECDLY  125 (476)
Q Consensus        94 i~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~l  125 (476)
                      |..|..-.-.-|-|=--||..=+.|+..|+.+
T Consensus        44 l~~LNDRLA~YIekVR~LEaqN~~L~~di~~l   75 (546)
T KOG0977|consen   44 LQELNDRLAVYIEKVRFLEAQNRKLEHDINLL   75 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444443344554444444444444444443

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=97.45  E-value=0.19  Score=51.89  Aligned_cols=87  Identities=17%  Similarity=0.321  Sum_probs=59.5

Q ss_pred             HHHhHHHHHHHHHhhhhHHHHHhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-
Q 011839          150 KEATLEETIKQLRNQNDLHIQREGGLEMNI----ANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL-  224 (476)
Q Consensus       150 k~A~LE~tIKdLks~~es~~Qkea~LEeqI----kqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L-  224 (476)
                      ....+|..|.-++..+-++.+.-..-+..-    -.++++-+.|..=-..|.-.+..|.+.+..|.|+|...+.+.+.| 
T Consensus        85 ~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe  164 (305)
T PF14915_consen   85 NKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLE  164 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHH
Confidence            444555555555555555554433322222    234666678888888889999999999999999999999999988 


Q ss_pred             ---HHhhhhHhhhhh
Q 011839          225 ---EADKDSWTQMES  236 (476)
Q Consensus       225 ---KaERD~WLkkEI  236 (476)
                         ..-||.+--+-+
T Consensus       165 ~elh~trdaLrEKtL  179 (305)
T PF14915_consen  165 IELHHTRDALREKTL  179 (305)
T ss_pred             HHHHHHHHHHHHHHH
Confidence               556777544443

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.44  E-value=0.03  Score=56.01  Aligned_cols=162  Identities=18%  Similarity=0.183  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 011839          114 TVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKE  193 (476)
Q Consensus       114 ~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEl  193 (476)
                      .|+.|+.+++.+.+... ...+.++.++.+.+.+.+....++..+.+|+.+.......-..+.++++..+..++.     
T Consensus        11 ~iq~lD~e~~rl~~~~~-~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~-----   84 (239)
T COG1579          11 AIQKLDLEKDRLEPRIK-EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSA-----   84 (239)
T ss_pred             HHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence            45567777777777644 556666777777777777777788877777776655555555555555555544431     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          194 AALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQ  272 (476)
Q Consensus       194 a~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~  272 (476)
                      .+-..+|..|.-+...++.+.++++.++..|..++.. +..+| .++..+..+       ...+   ......++.++..
T Consensus        85 v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~-l~~~i~~l~~~~~~~-------e~~~---~e~~~~~e~e~~~  153 (239)
T COG1579          85 VKDERELRALNIEIQIAKERINSLEDELAELMEEIEK-LEKEIEDLKERLERL-------EKNL---AEAEARLEEEVAE  153 (239)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-------HHHH---HHHHHHHHHHHHH
Confidence            2223344555555555555555555555544333322 11222 222232222       2222   2222334445555


Q ss_pred             HHHHHHHHHHhhhhhhhhhh
Q 011839          273 LKENVSSLRSQLSSDESKKL  292 (476)
Q Consensus       273 LkeqIseLqs~lqeLeeei~  292 (476)
                      .++..-.+.+.+..|.+..-
T Consensus       154 i~e~~~~~~~~~~~L~~~l~  173 (239)
T COG1579         154 IREEGQELSSKREELKEKLD  173 (239)
T ss_pred             HHHHHHHHHHHHHHHHHhcC
Confidence            55555555555555555554

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.40  E-value=0.036  Score=55.41  Aligned_cols=131  Identities=24%  Similarity=0.284  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011839          138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL  217 (476)
Q Consensus       138 kQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasL  217 (476)
                      ..++.+.+.+.-........++.++..++...-.-..++.++..|+..+              .++..+...+..++...
T Consensus        13 q~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv--------------~~~e~ei~~~r~r~~~~   78 (239)
T COG1579          13 QKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQV--------------SQLESEIQEIRERIKRA   78 (239)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Confidence            3455555555555555555666655554444433333333333333333              33344444444444444


Q ss_pred             HHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011839          218 EERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE  288 (476)
Q Consensus       218 EeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLe  288 (476)
                      +.++.   +..+.   .|. .|+..+...+..+.+|..++..+..++..+..++..++..+..++..+...+
T Consensus        79 e~kl~---~v~~~---~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~  144 (239)
T COG1579          79 EEKLS---AVKDE---RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE  144 (239)
T ss_pred             HHHHh---ccccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44442   22222   233 3333444444444444444444444444444444444444444433333333

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=97.39  E-value=0.37  Score=56.36  Aligned_cols=144  Identities=18%  Similarity=0.316  Sum_probs=70.0

Q ss_pred             CCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhH-------
Q 011839           61 DRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATL-------  133 (476)
Q Consensus        61 ~~~~~~~~~~~~~~e~~~~~~~q~e~~~~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~ll-------  133 (476)
                      +|--+.|+-.+|..+-+..+   ...+|.+++-||.|+.|.+--.-.=--++.++.+|+.+|..+.+..+-.+       
T Consensus       156 s~~~~~~sp~~~~~~~~~hL---~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~  232 (1195)
T KOG4643|consen  156 SGKELYKSPYDIVVKKNLHL---EVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRAD  232 (1195)
T ss_pred             cCCCCCCCcchhhcchhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            33444455445544433222   34467888888888877665432222234445555555555544443333       


Q ss_pred             ------------------------------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHH
Q 011839          134 ------------------------------EETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQ  183 (476)
Q Consensus       134 ------------------------------qEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe  183 (476)
                                                    .+++..|+.++.-++-...-|++.|..|+.+.+.     +.++.+|=+|+
T Consensus       233 ~yrdeldalre~aer~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~-----~tleseiiqlk  307 (1195)
T KOG4643|consen  233 RYRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-----ATLESEIIQLK  307 (1195)
T ss_pred             hhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc-----CChHHHHHHHH
Confidence                                          3333444444444444445555555555544322     33444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          184 SEKEFWLQKEAALEQKISQLRDESAALNM  212 (476)
Q Consensus       184 ~EIs~~~qEla~LepeiekL~~EeasLkQ  212 (476)
                      ..++....+.....-++++|..++..|.-
T Consensus       308 qkl~dm~~erdtdr~kteeL~eEnstLq~  336 (1195)
T KOG4643|consen  308 QKLDDMRSERDTDRHKTEELHEENSTLQV  336 (1195)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            44444444444444555555555554443

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.39  E-value=0.35  Score=56.64  Aligned_cols=208  Identities=17%  Similarity=0.224  Sum_probs=84.0

Q ss_pred             hhhhhhhhhhhHhhHHHHHH-----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHH
Q 011839           97 LRNERESHIQKEATLEGTVQ-----QLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQR  171 (476)
Q Consensus        97 l~~e~d~~~~~e~~~Ek~Ik-----qLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qk  171 (476)
                      |+++.++...+=+++++.+.     ++.+.+..+...++.. +..|+..+.-...+..++..+|-.+++-....   ..+
T Consensus       713 l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~-~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~r---e~r  788 (1174)
T KOG0933|consen  713 LKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEES-EQQIKEKERALKKCEDKISTLEKKMKDAKANR---ERR  788 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh---HhH
Confidence            44555555555555554432     3334444444443331 12223333333444444444444444433321   112


Q ss_pred             hhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhh
Q 011839          172 EGGLEMNIANLQSEKE-------FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAG  244 (476)
Q Consensus       172 ea~LEeqIkqLe~EIs-------~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~Iss  244 (476)
                      ...++..|+.++..++       .+.++...|.-+.+.+..+-..+++.+..++..+..|+.+-+.       +...|..
T Consensus       789 lkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~-------l~~kv~~  861 (1174)
T KOG0933|consen  789 LKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGN-------LEAKVDK  861 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHh
Confidence            2223333333333333       2333334444444444444444444444444444444333222       2223333


Q ss_pred             hHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHHHH
Q 011839          245 LSVDITQLRMQVVELEE-------SRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLI  317 (476)
Q Consensus       245 L~~~i~sLq~QVe~Lee-------e~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl~  317 (476)
                      ...+...++.+++.+..       ++.++..+.+......+.....++.|++++.        .|.+....+...|++|.
T Consensus       862 ~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~--------~~~~e~~~~~k~v~~l~  933 (1174)
T KOG0933|consen  862 VEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVT--------KLESEKANARKEVEKLL  933 (1174)
T ss_pred             HHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHH--------HhhhhHHHHHHHHHHHH
Confidence            33333333333333333       3333333334444444444445555555543        22333344445555555


Q ss_pred             HHHHHH
Q 011839          318 TENIEL  323 (476)
Q Consensus       318 ~en~~l  323 (476)
                      .++.-+
T Consensus       934 ~k~~wi  939 (1174)
T KOG0933|consen  934 KKHEWI  939 (1174)
T ss_pred             Hhccch
Confidence            555443

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=97.39  E-value=0.25  Score=56.80  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=15.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHh
Q 011839          109 ATLEGTVQQLQNECDLYKEKVQAT  132 (476)
Q Consensus       109 ~~~Ek~IkqLqeEi~~lkqkLE~l  132 (476)
                      .-+|+.|+.|+++|..+...+...
T Consensus       241 ~~lEr~l~~le~Ei~~L~~~~~~~  264 (775)
T PF10174_consen  241 ASLERMLRDLEDEIYRLRSRGELS  264 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccc
Confidence            456677777777777776654433

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.34  E-value=0.051  Score=61.96  Aligned_cols=97  Identities=15%  Similarity=0.203  Sum_probs=66.4

Q ss_pred             hhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh----------HHH
Q 011839          100 ERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND----------LHI  169 (476)
Q Consensus       100 e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~e----------s~~  169 (476)
                      +.|..+|+   +...|+.++-++..+++..+.+..+. ++|+.+..+..-..+.+......|+.+++          .-.
T Consensus       654 ~l~~~~~k---yK~lI~~lD~~~e~lkQ~~~~l~~e~-eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~  729 (970)
T KOG0946|consen  654 ELDDIQQK---YKGLIRELDYQIENLKQMEKELQVEN-EELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGA  729 (970)
T ss_pred             HHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHH
Confidence            34444555   78889999999999999988887777 99999998888888888888888888877          222


Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          170 QREGGLEMNIANLQSEKEFWLQKEAALEQKI  200 (476)
Q Consensus       170 Qkea~LEeqIkqLe~EIs~~~qEla~Lepei  200 (476)
                      +.-....+.+..+..++.+...+...+..++
T Consensus       730 e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L  760 (970)
T KOG0946|consen  730 EASKTQNEELNAALSENKKLENDQELLTKEL  760 (970)
T ss_pred             HhccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222344455555555554444443333333

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=97.28  E-value=0.19  Score=48.91  Aligned_cols=125  Identities=21%  Similarity=0.193  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          201 SQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSS  279 (476)
Q Consensus       201 ekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIse  279 (476)
                      ..+.++...++.-..++|++-+.|.+..-. +-+|. .|-..|..++..+..+..+...+......|..++..|+.++-.
T Consensus        63 K~l~eEledLk~~~~~lEE~~~~L~aq~rq-lEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~  141 (193)
T PF14662_consen   63 KALEEELEDLKTLAKSLEEENRSLLAQARQ-LEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCE  141 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHH
Confidence            333444444444444455554444332222 33444 5555666666666666666666666666666666666666644


Q ss_pred             HHHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHHHHHHHHHHHHhhhhhhhhh
Q 011839          280 LRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL  334 (476)
Q Consensus       280 Lqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl~~en~~l~ekvneL~~~l  334 (476)
                      +..-+-.-+..+.        +-..+|+.+...|+-...=..+|.-+.+.|--+|
T Consensus       142 ~e~l~~~~da~l~--------e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql  188 (193)
T PF14662_consen  142 FESLICQRDAILS--------ERTQQIEELKKTIEEYRSITEELRLEKSRLEEQL  188 (193)
T ss_pred             HHHHHHHHHHHHH--------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4333332222222        2223566666666655555556665666654433

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.28  E-value=0.73  Score=55.12  Aligned_cols=61  Identities=21%  Similarity=0.271  Sum_probs=32.6

Q ss_pred             hhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q 011839          105 IQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQN  165 (476)
Q Consensus       105 ~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~  165 (476)
                      .+.-.-.+..++.|..+...++.+++..+.++..+++.....+......+...++.+....
T Consensus       648 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~  708 (1201)
T PF12128_consen  648 EQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELEELLEEL  708 (1201)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344555666666666666666655555555555555555555544444444444433

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.28  E-value=0.65  Score=55.19  Aligned_cols=99  Identities=17%  Similarity=0.191  Sum_probs=49.2

Q ss_pred             hhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh------cccchhhhHH
Q 011839          234 MES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT------SEQKDFSTQI  306 (476)
Q Consensus       234 kEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~------~~~e~~~~qi  306 (476)
                      .|+ .+++.+..........+.++...++++.-|...-.+....+..++..+....+...--.+      -+...+...+
T Consensus       479 ~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~  558 (1293)
T KOG0996|consen  479 EEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQEL  558 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            444 445555555555555555555555555555555555555555555555554433321111      1334444455


Q ss_pred             HHHHhHHHHHHHHHHHHHHhhhhhhh
Q 011839          307 EAAGALIDKLITENIELVEKVNDLSV  332 (476)
Q Consensus       307 e~a~~~v~kl~~en~~l~ekvneL~~  332 (476)
                      ..+-.-+.++..+-..|.-.++.|..
T Consensus       559 ~~~~k~l~~~~~e~~~~~~~~~~~rq  584 (1293)
T KOG0996|consen  559 KEKEKELPKLRKEERNLKSQLNKLRQ  584 (1293)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            56666666666665555444444433

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.28  E-value=0.21  Score=59.27  Aligned_cols=43  Identities=19%  Similarity=0.255  Sum_probs=23.7

Q ss_pred             ccchhhhHHHHHHhHHH-----------HHHHHHHHHHHhhhhhhhhhhhhhhh
Q 011839          298 EQKDFSTQIEAAGALID-----------KLITENIELVEKVNDLSVKLDRQSVA  340 (476)
Q Consensus       298 ~~e~~~~qie~a~~~v~-----------kl~~en~~l~ekvneL~~~l~~~~~~  340 (476)
                      ..+.+...|++=|..+.           +|.-.+..+...|-.|...|++-.-+
T Consensus       718 k~e~~~~~i~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~  771 (1317)
T KOG0612|consen  718 KAENLLLEIEAELEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISK  771 (1317)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455555555443           34444455666777777777765444

>PRK09039 hypothetical protein; Validated

Probab=97.24  E-value=0.034  Score=57.78  Aligned_cols=159  Identities=17%  Similarity=0.159  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHH
Q 011839          175 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRM  254 (476)
Q Consensus       175 LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~  254 (476)
                      |.++|..++.+++.+..+++.|-.-+.--......+...+..+.+.+..+++.|+.+-..--........+......+..
T Consensus        44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~  123 (343)
T PRK09039         44 LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQ  123 (343)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHH
Confidence            33444444444444444444443333333444445555555555555555555544222100111112233333334444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHHHHHH-HHHHHHhhhhhhhh
Q 011839          255 QVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITE-NIELVEKVNDLSVK  333 (476)
Q Consensus       255 QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl~~e-n~~l~ekvneL~~~  333 (476)
                      ++..++...+..-..+..|+.+|..|+.++..|+..+..++... .+.+.+|+....-+++.+.+ ..+|..--++++..
T Consensus       124 ~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~-~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~~  202 (343)
T PRK09039        124 ELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD-RESQAKIADLGRRLNVALAQRVQELNRYRSEFFGR  202 (343)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            44444444444444444445555555555555554444333222 56777888888888888865 77777655566544


Q ss_pred             h
Q 011839          334 L  334 (476)
Q Consensus       334 l  334 (476)
                      |
T Consensus       203 l  203 (343)
T PRK09039        203 L  203 (343)
T ss_pred             H
Confidence            4

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=97.20  E-value=0.14  Score=49.60  Aligned_cols=60  Identities=22%  Similarity=0.258  Sum_probs=38.0

Q ss_pred             HHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011839           92 ETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEA  152 (476)
Q Consensus        92 eti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A  152 (476)
                      +.|+.|+++..-.-.++.-.++.+..+..++..+..-|+.+..+. ..|+.++..+.+...
T Consensus        27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~-~eL~k~L~~y~kdK~   86 (201)
T PF13851_consen   27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEV-EELRKQLKNYEKDKQ   86 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            356667777777677777777777777777777776666655555 555555555554433

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=97.19  E-value=0.64  Score=52.64  Aligned_cols=199  Identities=19%  Similarity=0.254  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHH
Q 011839           77 ERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEE  156 (476)
Q Consensus        77 ~~~~~~q~e~~~~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~  156 (476)
                      |++.+|-..-  .|+-+.-.|+.-..-.+..=.+.++.|..|+..+.....+ +-.....+.+|..++...--+-+.+=.
T Consensus       416 e~qkll~ekk--~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~-eq~yskQVeeLKtELE~EkLKN~ELt~  492 (786)
T PF05483_consen  416 EKQKLLDEKK--QFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKES-EQHYSKQVEELKTELEQEKLKNTELTV  492 (786)
T ss_pred             HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444433  4444444455444444455556777888888888777777 444455557777777765556666666


Q ss_pred             HHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---------HHh
Q 011839          157 TIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL---------EAD  227 (476)
Q Consensus       157 tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L---------KaE  227 (476)
                      ....|.-++..-.|......-.++.++..|.........+..+++.|...+..|+-.+.++-.++..-         +.+
T Consensus       493 ~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksE  572 (786)
T PF05483_consen  493 NCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSE  572 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            77777777778888888887788888888887777777777888888877777776666555554433         111


Q ss_pred             hh-hHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          228 KD-SWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS  278 (476)
Q Consensus       228 RD-~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIs  278 (476)
                      -+ .-+--|+ .....+..+...+..|+.+|+.-...+..|..++..|+.++.
T Consensus       573 en~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~  625 (786)
T PF05483_consen  573 ENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKIT  625 (786)
T ss_pred             HhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            11 0111222 334444555555555555555555555555555555554443

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.16  E-value=0.36  Score=57.37  Aligned_cols=23  Identities=26%  Similarity=0.255  Sum_probs=10.4

Q ss_pred             HHHHhHHHHHHHHHHHHHHhhhh
Q 011839          307 EAAGALIDKLITENIELVEKVND  329 (476)
Q Consensus       307 e~a~~~v~kl~~en~~l~ekvne  329 (476)
                      ++++..+.+-+.+--...+++-.
T Consensus       699 e~~~~e~~~~lseek~ar~k~e~  721 (1317)
T KOG0612|consen  699 EAQMKEIESKLSEEKSAREKAEN  721 (1317)
T ss_pred             HHHHHHHHHHhcccccHHHHHHH
Confidence            44455554444444444444333

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.16  E-value=0.49  Score=51.80  Aligned_cols=117  Identities=12%  Similarity=0.131  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHH----
Q 011839          113 GTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF----  188 (476)
Q Consensus       113 k~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~----  188 (476)
                      ..+..++.++..++..+...-.++ -++-.++...-+.+..+..+|...........+.-....-++..++..+..    
T Consensus        34 ~eL~~~qeel~~~k~~l~~~E~~k-~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~  112 (522)
T PF05701_consen   34 TELEKAQEELAKLKEQLEAAEREK-AQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASV  112 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchH
Confidence            344556666666666665555555 555555555555555555555555554444444444444455666555553    


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 011839          189 -WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS  230 (476)
Q Consensus       189 -~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~  230 (476)
                       |..++.....+|.....+-...++.|..+...+..+-.+|+.
T Consensus       113 ~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~  155 (522)
T PF05701_consen  113 AWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNA  155 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             666666666666666666666666666665555555444444

Several sequences in this family are described as being myosin heavy chain-like.

>PRK01156 chromosome segregation protein; Provisional

Probab=97.12  E-value=0.79  Score=52.62  Aligned_cols=26  Identities=27%  Similarity=0.491  Sum_probs=13.4

Q ss_pred             HHHHHHHHHH--------HHHHHHHHHHHHhhhh
Q 011839           75 EAERQHLLQR--------EAMAILEETVKHLRNE  100 (476)
Q Consensus        75 e~~~~~~~q~--------e~~~~~eeti~~l~~e  100 (476)
                      ..+|..||-+        .+|+-+.++++.++.+
T Consensus       148 ~~~r~~~ld~~~~~~~~~~~~~~~~~~~~~~~~e  181 (895)
T PRK01156        148 PAQRKKILDEILEINSLERNYDKLKDVIDMLRAE  181 (895)
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            3466666643        2344445555555544

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.12  E-value=1.2  Score=54.62  Aligned_cols=136  Identities=13%  Similarity=0.132  Sum_probs=72.1

Q ss_pred             HHHHHHHHHhhhhhhhhhhhHh------hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011839           88 AILEETVKHLRNERESHIQKEA------TLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQL  161 (476)
Q Consensus        88 ~~~eeti~~l~~e~d~~~~~e~------~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdL  161 (476)
                      +-++..+++|+.+...-.+.-.      .....+..+...+..+...++.. .+.+..++.+...+..+...++..+..|
T Consensus       317 ~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~-eeeLeeleeeleeleeEleelEeeLeeL  395 (1486)
T PRK04863        317 AELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQ-NEVVEEADEQQEENEARAEAAEEEVDEL  395 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555556555554322111      12345555555666666554443 3333666666666666666677777777


Q ss_pred             HhhhhHHHHHhhhHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011839          162 RNQNDLHIQREGGLEMNIANLQSEKE-----------------FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL  224 (476)
Q Consensus       162 ks~~es~~Qkea~LEeqIkqLe~EIs-----------------~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L  224 (476)
                      +.+.....+....++.++..++..+.                 .+...+.....++..+..+...+++++..+++.+..+
T Consensus       396 qeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql  475 (1486)
T PRK04863        396 KSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQF  475 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666655555544                 2222334444444555555555555555555555444

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=97.12  E-value=0.77  Score=52.16  Aligned_cols=225  Identities=23%  Similarity=0.216  Sum_probs=134.5

Q ss_pred             hhhhHhhHHHHHHHHHHHHHHHHHHHH-------Hh--------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHH
Q 011839          104 HIQKEATLEGTVQQLQNECDLYKEKVQ-------AT--------LEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLH  168 (476)
Q Consensus       104 ~~~~e~~~Ek~IkqLqeEi~~lkqkLE-------~l--------lqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~  168 (476)
                      -.|+=+.+|+.++-+-.+-+.+++.++       ..        .-|.|.+|..+=+.+.++...-..-||.|+.+...+
T Consensus       407 ~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~  486 (961)
T KOG4673|consen  407 YHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEA  486 (961)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Confidence            478889999999887777777666655       21        124578888888888888888888999999887766


Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhH---
Q 011839          169 IQREGGLEMNIANLQSEKEFWLQ--------------KEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW---  231 (476)
Q Consensus       169 ~Qkea~LEeqIkqLe~EIs~~~q--------------Ela~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~W---  231 (476)
                      .--..++-+.|..|+.+-....+              -+..+..++....+.++.+.-..+.++++...+++--|..   
T Consensus       487 etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~D  566 (961)
T KOG4673|consen  487 ETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSD  566 (961)
T ss_pred             hHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            65555555555555544442222              1234444555555555555666777788777777766664   


Q ss_pred             hhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhhhhhhhh--hhc-ccchhhh
Q 011839          232 TQMESVSKETIAGLSVDITQLRMQVVELEESRNN----LLQENRQLKENVSSLRSQLSSDESKKLQH--ATS-EQKDFST  304 (476)
Q Consensus       232 LkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~----LeeEIq~LkeqIseLqs~lqeLeeei~~~--~~~-~~e~~~~  304 (476)
                      |+++.-++.  ....+.-.-|-.+|..|...+.-    +...-+.++..|..|+.|++.-+...-..  +++ ----|=-
T Consensus       567 lqk~nrlkQ--dear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlR  644 (961)
T KOG4673|consen  567 LQKENRLKQ--DEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLR  644 (961)
T ss_pred             HHHHhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHH
Confidence            334443331  12222222333444444443332    33445667777777777777776555221  111 2223445


Q ss_pred             HHHHHHhHHHHHHH----HHHHHHHhhhhh
Q 011839          305 QIEAAGALIDKLIT----ENIELVEKVNDL  330 (476)
Q Consensus       305 qie~a~~~v~kl~~----en~~l~ekvneL  330 (476)
                      |||+.+..+.+..+    +...|-++..+-
T Consensus       645 QIE~lQ~tl~~~~tawereE~~l~~rL~dS  674 (961)
T KOG4673|consen  645 QIEALQETLSKAATAWEREERSLNERLSDS  674 (961)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHhhhhH
Confidence            99999999888775    233444444433

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.09  E-value=0.32  Score=55.73  Aligned_cols=137  Identities=12%  Similarity=0.122  Sum_probs=75.6

Q ss_pred             HHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhh
Q 011839          156 ETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME  235 (476)
Q Consensus       156 ~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkE  235 (476)
                      .+.++|+-+++..--+...|..+|-.++-.+..-..+++.+....+-...+...|.+++-++.+++..|--||..|=++-
T Consensus       437 ak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ql  516 (1118)
T KOG1029|consen  437 AKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQL  516 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            33344444444333334444444444444444566777777777777788888888888888888888877776662221


Q ss_pred             h-------chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 011839          236 S-------VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL  292 (476)
Q Consensus       236 I-------sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~  292 (476)
                      .       ....+.+.|+.....-..=...++..+.+|+.|+.+-...++-+..++.+|++.+.
T Consensus       517 kq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~  580 (1118)
T KOG1029|consen  517 KQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVN  580 (1118)
T ss_pred             HHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            1       11112233333333323333445555555666666666666666666666665553

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=97.08  E-value=0.82  Score=51.83  Aligned_cols=223  Identities=17%  Similarity=0.123  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHH
Q 011839          114 TVQQLQNECDLYKEKVQATLEETIQQ---LQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWL  190 (476)
Q Consensus       114 ~IkqLqeEi~~lkqkLE~llqEkIkQ---Lq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~  190 (476)
                      +.+.|+..+......+-.+..++--+   +..-...+...++.++.+|-.|++-+....|+-..++++++.|-.+...+.
T Consensus       311 tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks  390 (786)
T PF05483_consen  311 TQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKS  390 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence            44555555555555555544444333   333445566689999999999999999999999999999999998888777


Q ss_pred             HHHHHHHHH-------HHHHHH----------HHHHHHH---HHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHH
Q 011839          191 QKEAALEQK-------ISQLRD----------ESAALNM---KRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDI  249 (476)
Q Consensus       191 qEla~Lepe-------iekL~~----------EeasLkQ---KLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i  249 (476)
                      .++..+...       ++.|..          +...+..   .|...+..+.-|-.-    ...++ +|+..+.......
T Consensus       391 ~eleEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~----~ekev~dLe~~l~~~~~~e  466 (786)
T PF05483_consen  391 SELEEMTKQKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQI----REKEVHDLEIQLTTIKESE  466 (786)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHhh
Confidence            777655422       111111          1111111   111111111111111    12355 6666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhc------ccchhhhHHHHHHhHHHHHHHHHHHH
Q 011839          250 TQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATS------EQKDFSTQIEAAGALIDKLITENIEL  323 (476)
Q Consensus       250 ~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~------~~e~~~~qie~a~~~v~kl~~en~~l  323 (476)
                      ..-..+|+.|+.++..=.-.+..|......+...-..+..+...+...      .-....-|-+-...-|++|-..|..|
T Consensus       467 q~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~L  546 (786)
T PF05483_consen  467 QHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQL  546 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666677777776666544555556555665555555555444333211      22333445566677788888889888


Q ss_pred             HHhhhhhhhhhhhhhhh
Q 011839          324 VEKVNDLSVKLDRQSVA  340 (476)
Q Consensus       324 ~ekvneL~~~l~~~~~~  340 (476)
                      .+.++.++-++.+.+-+
T Consensus       547 rneles~~eel~~k~~E  563 (786)
T PF05483_consen  547 RNELESVKEELKQKGEE  563 (786)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88888777766555443

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.05  E-value=0.21  Score=55.74  Aligned_cols=92  Identities=23%  Similarity=0.194  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhH---HHHHHHHHHHHHH
Q 011839          112 EGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGL---EMNIANLQSEKEF  188 (476)
Q Consensus       112 Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~L---EeqIkqLe~EIs~  188 (476)
                      +..+..|+.+++.+...++....+. +.+......+.......+.....++........-...|   +..|..|+..++.
T Consensus       327 ~~el~~l~~~l~~l~~~i~~~~~~~-~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~  405 (594)
T PF05667_consen  327 EQELEELQEQLDELESQIEELEAEI-KMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEA  405 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            4455556666666666644433333 55555555555555666666666655555444443333   3446677777776


Q ss_pred             HHHHHHHHHHHHHHHH
Q 011839          189 WLQKEAALEQKISQLR  204 (476)
Q Consensus       189 ~~qEla~LepeiekL~  204 (476)
                      ..+++..|..+|+..+
T Consensus       406 s~~rl~~L~~qWe~~R  421 (594)
T PF05667_consen  406 SEQRLVELAQQWEKHR  421 (594)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6666666666666443

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.03  E-value=0.93  Score=51.59  Aligned_cols=104  Identities=16%  Similarity=0.195  Sum_probs=64.1

Q ss_pred             chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh--h----hcccchhhhHHHHHH
Q 011839          237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH--A----TSEQKDFSTQIEAAG  310 (476)
Q Consensus       237 sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~--~----~~~~e~~~~qie~a~  310 (476)
                      .++..+..+...+..|.+++..|......+..+...+...+..+.....++..+...-  .    ....+++..++.++.
T Consensus       514 ~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~  593 (698)
T KOG0978|consen  514 TLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELE  593 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444445555555555555555555555555555555555555555555444211  1    126677888888888


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 011839          311 ALIDKLITENIELVEKVNDLSVKLDRQSVA  340 (476)
Q Consensus       311 ~~v~kl~~en~~l~ekvneL~~~l~~~~~~  340 (476)
                      .-++++...+--|-|..-.|-.+|-.....
T Consensus       594 ~ele~~~~k~~rleEE~e~L~~kle~~k~~  623 (698)
T KOG0978|consen  594 LELEIEKFKRKRLEEELERLKRKLERLKKE  623 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            889988888888888888888877444433

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=97.02  E-value=0.52  Score=48.50  Aligned_cols=118  Identities=21%  Similarity=0.294  Sum_probs=70.4

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHH
Q 011839          170 QREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVD  248 (476)
Q Consensus       170 Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~  248 (476)
                      .-+..|++.+..|+.........+..+.+-+..+.+..+.|..++..+.+....+. .-|.   .++ .++..|..+...
T Consensus       149 gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~-~~D~---~eL~~lr~eL~~~~~~  224 (325)
T PF08317_consen  149 GLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIE-SCDQ---EELEALRQELAEQKEE  224 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hcCH---HHHHHHHHHHHHHHHH
Confidence            33445556666666666655555555556666666666666555555544444331 1111   445 666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011839          249 ITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK  291 (476)
Q Consensus       249 i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei  291 (476)
                      +...+.++..++.++..+...+..+..++..+..+|.+++.-.
T Consensus       225 i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~  267 (325)
T PF08317_consen  225 IEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR  267 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666667777777777777777777777776666666666443

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.01  E-value=0.29  Score=57.17  Aligned_cols=37  Identities=24%  Similarity=0.537  Sum_probs=25.7

Q ss_pred             CCcccccCCceeeccCCCccchhhhhhccccccccccCccCCCC
Q 011839          404 SSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDA  447 (476)
Q Consensus       404 ~~~~~~~~~eiv~~~ld~~~~~~~~~q~~~~~~d~~~~vp~~da  447 (476)
                      -|-.-. .|+|--+||+-.-.++++      |.+.+++.|+++-
T Consensus       567 ~~n~m~-~GrVTF~PLNrl~~r~v~------yp~~sdaiPli~k  603 (1200)
T KOG0964|consen  567 KLNKMK-GGRVTFMPLNRLKARDVE------YPKDSDAIPLISK  603 (1200)
T ss_pred             HHHhcc-CCeeEEeecccCchhhcc------CCCCCCccchHHH
Confidence            344443 489999999988776554      3355778888764

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.00  E-value=0.8  Score=56.15  Aligned_cols=141  Identities=8%  Similarity=0.095  Sum_probs=72.3

Q ss_pred             HHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 011839          150 KEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKD  229 (476)
Q Consensus       150 k~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD  229 (476)
                      +...+...+..|....+...+.-..+.+++..++.++.....++..+..++..+......+..++..++..+..|...+ 
T Consensus       349 ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~-  427 (1486)
T PRK04863        349 KIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAK-  427 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            3344444444444444444444444444444444444444444444444444444444444444444444444443322 


Q ss_pred             hHhh-hhh---chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011839          230 SWTQ-MES---VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK  291 (476)
Q Consensus       230 ~WLk-kEI---sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei  291 (476)
                      .|.. ..+   .|+..+.........++.++..++..+..+....+.++.....+......+....
T Consensus       428 ~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~  493 (1486)
T PRK04863        428 QLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSE  493 (1486)
T ss_pred             HHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHH
Confidence            2221 111   4556666666666677777777777777777777777666666555555444333

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=96.99  E-value=1  Score=51.30  Aligned_cols=96  Identities=17%  Similarity=0.082  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHH
Q 011839          113 GTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQ-------KEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSE  185 (476)
Q Consensus       113 k~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQ-------k~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~E  185 (476)
                      +.|.+|..+=..+..+ .+.....|+.|.+.-...--       .++.|+.....|+.-+.....-+-.+.+.|..++.+
T Consensus       453 E~I~~lm~EGEkLSK~-ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae  531 (961)
T KOG4673|consen  453 EIINQLMAEGEKLSKK-QLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAE  531 (961)
T ss_pred             HHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            4566777666666666 45555566666655444333       333333333334333333333344444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          186 KEFWLQKEAALEQKISQLRDESAA  209 (476)
Q Consensus       186 Is~~~qEla~LepeiekL~~Eeas  209 (476)
                      ...-....+.+...+..|...+.+
T Consensus       532 ~~rq~~~~~~sr~~~~~le~~~~a  555 (961)
T KOG4673|consen  532 LTRQKDYYSNSRALAAALEAQALA  555 (961)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHH
Confidence            443333333333333333333333

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=96.99  E-value=0.8  Score=50.19  Aligned_cols=82  Identities=21%  Similarity=0.242  Sum_probs=40.4

Q ss_pred             HHHhHHHHHHHHHhhhhHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHH
Q 011839          150 KEATLEETIKQLRNQNDLHIQREGGLEMN----IANLQSEKEFWLQKEAALEQKISQLRDES---AALNMKRASLEERLK  222 (476)
Q Consensus       150 k~A~LE~tIKdLks~~es~~Qkea~LEeq----IkqLe~EIs~~~qEla~LepeiekL~~Ee---asLkQKLasLEeKL~  222 (476)
                      ++..|-..|..|+..+++.......-+++    ..........|..++.....++..|..+.   ..+..+|......+.
T Consensus       173 kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~  252 (522)
T PF05701_consen  173 KVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELE  252 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666666666666543322222222    11223444456666666666666666555   223344555555555


Q ss_pred             HHHHhhhhH
Q 011839          223 LLEADKDSW  231 (476)
Q Consensus       223 ~LKaERD~W  231 (476)
                      .|+.+=..|
T Consensus       253 ~Lq~El~~~  261 (522)
T PF05701_consen  253 SLQAELEAA  261 (522)
T ss_pred             HHHHHHHHH
Confidence            554444333

Several sequences in this family are described as being myosin heavy chain-like.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.97  E-value=0.12  Score=58.73  Aligned_cols=113  Identities=19%  Similarity=0.210  Sum_probs=54.8

Q ss_pred             hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHhhh----hHhhhhh
Q 011839          163 NQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL--EADKD----SWTQMES  236 (476)
Q Consensus       163 s~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L--KaERD----~WLkkEI  236 (476)
                      .++....++-..|+.++..|.+....=.+-+..|+.+|...+.....++.+|..-......-  .+.|-    .+...|-
T Consensus       460 ~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~  539 (697)
T PF09726_consen  460 SELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQEC  539 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchh
Confidence            33333333344444444444444444444444444444444444444444443322111111  11111    1122233


Q ss_pred             --chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          237 --VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKE  275 (476)
Q Consensus       237 --sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~Lke  275 (476)
                        .++.....++.++..|+.+++..++.+..++.++++|+.
T Consensus       540 ~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~  580 (697)
T PF09726_consen  540 AESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK  580 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              456666777777777777777777777777777766654

; GO: 0016021 integral to membrane

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=96.97  E-value=0.54  Score=51.84  Aligned_cols=87  Identities=18%  Similarity=0.235  Sum_probs=46.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHH
Q 011839          110 TLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW  189 (476)
Q Consensus       110 ~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~  189 (476)
                      -.+..|..|+++|......|..+          +.+....+...++..|..|-+.++.-...+...+..+..+...+...
T Consensus       253 ~i~~~i~~l~~~i~~~~~~l~~l----------~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~  322 (569)
T PRK04778        253 DIEKEIQDLKEQIDENLALLEEL----------DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHA  322 (569)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhc----------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            35677777777777655544222          33444445555556666666655555555555555555544444444


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 011839          190 LQKEAALEQKISQLRDE  206 (476)
Q Consensus       190 ~qEla~LepeiekL~~E  206 (476)
                      ......+..++..|...
T Consensus       323 ~e~~~~l~~Ei~~l~~s  339 (569)
T PRK04778        323 KEQNKELKEEIDRVKQS  339 (569)
T ss_pred             HHHHHHHHHHHHHHHHc
Confidence            44444444444444444

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=96.97  E-value=0.43  Score=52.59  Aligned_cols=112  Identities=14%  Similarity=0.164  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------------hhhh--Hhhhhh-ch
Q 011839          175 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEA-------------DKDS--WTQMES-VS  238 (476)
Q Consensus       175 LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKa-------------ERD~--WLkkEI-sL  238 (476)
                      +.+++..+...+.....+...+...+..|...+...+.++..+..++..++.             =.+.  -+..+| .+
T Consensus       381 l~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l  460 (569)
T PRK04778        381 LQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEAL  460 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444444444444444444444444433311             0001  123444 55


Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011839          239 KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS  286 (476)
Q Consensus       239 ke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqe  286 (476)
                      ...+..-..++..+..++.........+..+...|......+..-|+.
T Consensus       461 ~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy  508 (569)
T PRK04778        461 AEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY  508 (569)
T ss_pred             HHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555445555555566666666666666666666665555555544

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=96.96  E-value=0.086  Score=48.90  Aligned_cols=97  Identities=27%  Similarity=0.345  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHh------hhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          196 LEQKISQLRDESAALNMKRASLEERLKLLEADKDSWT------QMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQ  268 (476)
Q Consensus       196 LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WL------kkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~Lee  268 (476)
                      +..++.....+.+.++.+..+++..+...+..+....      +.+| .|+..|+.+...+..|..++..+.+++..|..
T Consensus         8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k   87 (140)
T PF10473_consen    8 VEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDK   87 (140)
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444455555555555555544433333221      2555 66666666666666666666666667777777


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhh
Q 011839          269 ENRQLKENVSSLRSQLSSDESKKL  292 (476)
Q Consensus       269 EIq~LkeqIseLqs~lqeLeeei~  292 (476)
                      ..+..+.+|++|.+....+..-+.
T Consensus        88 ~lq~~q~kv~eLE~~~~~~~~~l~  111 (140)
T PF10473_consen   88 ELQKKQEKVSELESLNSSLENLLQ  111 (140)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHH
Confidence            777777777766666666655554

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=96.95  E-value=0.4  Score=51.59  Aligned_cols=182  Identities=16%  Similarity=0.134  Sum_probs=97.3

Q ss_pred             hhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHH
Q 011839           97 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLE  176 (476)
Q Consensus        97 l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LE  176 (476)
                      +..+....-++-.-|++.|++++.+|..+.+.|        .+...++...-+.++.++-.|..|+.+.   .+++..|.
T Consensus        50 ~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql--------~~s~~~l~~~~~~I~~~~~~l~~l~~q~---r~qr~~La  118 (420)
T COG4942          50 LEKKIREQQDQRAKLEKQLKSLETEIASLEAQL--------IETADDLKKLRKQIADLNARLNALEVQE---REQRRRLA  118 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHH
Confidence            333333344444556666666666666666664        7778888888888888888888888876   56666677


Q ss_pred             HHHHHHHHH---------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhH
Q 011839          177 MNIANLQSE---------KEFWL-QKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLS  246 (476)
Q Consensus       177 eqIkqLe~E---------Is~~~-qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~  246 (476)
                      ..|.-++..         +.... +.-..+.--|..+   +-...+....+...+..|.+.|.....+.-.++..+..+.
T Consensus       119 ~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l---~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~  195 (420)
T COG4942         119 EQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGAL---NPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQR  195 (420)
T ss_pred             HHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777663         11111 1112222222222   2233444555555555554433333223334444445555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 011839          247 VDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL  292 (476)
Q Consensus       247 ~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~  292 (476)
                      .+...|..-+.+-++-...+..++......+.+|...=+.|+..+.
T Consensus       196 ~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ia  241 (420)
T COG4942         196 AQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIA  241 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            5555555555554444444555555555555544444444444443

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.93  E-value=0.38  Score=53.37  Aligned_cols=205  Identities=20%  Similarity=0.267  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHH-HH
Q 011839          112 EGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF-WL  190 (476)
Q Consensus       112 Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~-~~  190 (476)
                      +..+..|+.+|.-++++++....++|+-.+--+.- +...-.++....+|+...+...+.-..+.+.+.++++-... ..
T Consensus         7 eq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~l-LeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~   85 (772)
T KOG0999|consen    7 EQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLEL-LEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVAR   85 (772)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            44566666677777777666666665554444432 23333455555555555555555555555555555433220 00


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HHhhhhHhhh-----hh--chHHHHhhhHHHHHHHHHHH
Q 011839          191 QKEAALEQKISQLRDESAALNMKRASLEERLKLL-------EADKDSWTQM-----ES--VSKETIAGLSVDITQLRMQV  256 (476)
Q Consensus       191 qEla~LepeiekL~~EeasLkQKLasLEeKL~~L-------KaERD~WLkk-----EI--sLke~IssL~~~i~sLq~QV  256 (476)
                      ..+..=+.-+..-...+.++.+++..++..+.++       ++|++.+.+.     ++  .++..-..++.++..+.--.
T Consensus        86 ~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE  165 (772)
T KOG0999|consen   86 DGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFRE  165 (772)
T ss_pred             cchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHH
Confidence            0111111112222333444445555555544444       4444443221     11  33344455555666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhhhhhhhhhcccchhhhHHHHHHhH---HHHHHH
Q 011839          257 VELEESRNNLLQENRQLKENVSSLRS---QLSSDESKKLQHATSEQKDFSTQIEAAGAL---IDKLIT  318 (476)
Q Consensus       257 e~Leee~s~LeeEIq~LkeqIseLqs---~lqeLeeei~~~~~~~~e~~~~qie~a~~~---v~kl~~  318 (476)
                      ..|=++.+.|+++|=.|+.+++.|++   .+.-+++++..- ..+-+-|++|.|.|.-|   -+|++.
T Consensus       166 ~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRl-eEe~elln~q~ee~~~Lk~IAekQlE  232 (772)
T KOG0999|consen  166 ARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRL-EEETELLNSQLEEAIRLKEIAEKQLE  232 (772)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66777888888888888888887643   334444555322 12556677777766543   344444

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=96.90  E-value=0.16  Score=52.76  Aligned_cols=193  Identities=20%  Similarity=0.223  Sum_probs=105.0

Q ss_pred             HHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH------HHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011839           93 TVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQ------LQRQNDLRMQKEATLEETIKQLRNQND  166 (476)
Q Consensus        93 ti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQ------Lq~E~~d~lQk~A~LE~tIKdLks~~e  166 (476)
                      .|..|-.|.|.-.+-..-+...+.+|+..-..++++.......--..      ...+...+++-+....+..+.|..++.
T Consensus        10 AL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~   89 (319)
T PF09789_consen   10 ALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVE   89 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444455555555555444444432222000000      001223333334444444444444444


Q ss_pred             HHHHHhhhHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhh
Q 011839          167 LHIQREGGLEMNIANLQSEKE------------FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQM  234 (476)
Q Consensus       167 s~~Qkea~LEeqIkqLe~EIs------------~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkk  234 (476)
                      ...|+-..++..++-|+.-+.            -+..+-+.+..+++++.....+|..-+.++-....-|..|||.|=.+
T Consensus        90 ~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K  169 (319)
T PF09789_consen   90 ELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCK  169 (319)
T ss_pred             HHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444433333            12266678888888888888888888888888888888888887322


Q ss_pred             hhchHHHHh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011839          235 ESVSKETIA-------GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS  285 (476)
Q Consensus       235 EIsLke~Is-------sL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lq  285 (476)
                      =-.|...++       ..-.++..|-++-.-|.+.+..+.+|..-++..|+.+.+-+.
T Consensus       170 ~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le  227 (319)
T PF09789_consen  170 AHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE  227 (319)
T ss_pred             HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222221       122367777777777777777777777777777776666555

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.89  E-value=0.15  Score=47.15  Aligned_cols=133  Identities=22%  Similarity=0.274  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 011839          138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDE---SAALNMKR  214 (476)
Q Consensus       138 kQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~E---easLkQKL  214 (476)
                      ..|..+.+.+.-....++..+|.|...+....+.-..|..++..|+.+++.....+..+...+....+.   ...|..++
T Consensus         3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rri   82 (143)
T PF12718_consen    3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRI   82 (143)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhH
Confidence            345566666666666677777766665444444444444444444444444443333333333322221   11222222


Q ss_pred             HhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          215 ASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS  278 (476)
Q Consensus       215 asLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIs  278 (476)
                      ..||..+....        .=+ .....+.........+..+|..|+.+...|+..+..+..+..
T Consensus        83 q~LEeele~ae--------~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~  139 (143)
T PF12718_consen   83 QLLEEELEEAE--------KKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK  139 (143)
T ss_pred             HHHHHHHHHHH--------HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            22222222110        111 233344444444455555555555555555555555544443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.82  E-value=0.81  Score=49.06  Aligned_cols=70  Identities=19%  Similarity=0.191  Sum_probs=33.2

Q ss_pred             HHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 011839          159 KQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADK  228 (476)
Q Consensus       159 KdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaER  228 (476)
                      ...+.+.....+.+...++++..++....+..++++.+..++..|..+...+..+-..+++....|++++
T Consensus       105 ~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~  174 (499)
T COG4372         105 EAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQ  174 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444555555555555555555555555555544444444444444444443333

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.81  E-value=0.093  Score=53.91  Aligned_cols=15  Identities=33%  Similarity=0.468  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHHHH
Q 011839          267 LQENRQLKENVSSLR  281 (476)
Q Consensus       267 eeEIq~LkeqIseLq  281 (476)
                      ..++..|+..+..|+
T Consensus       275 ~~Ev~~Lk~~~~~Le  289 (325)
T PF08317_consen  275 RSEVKRLKAKVDALE  289 (325)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            345555555555443

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=96.79  E-value=0.86  Score=52.85  Aligned_cols=166  Identities=16%  Similarity=0.223  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHhhhhHHHHHhhhHHHHHHHHHHHHHH
Q 011839          112 EGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETI---KQLRNQNDLHIQREGGLEMNIANLQSEKEF  188 (476)
Q Consensus       112 Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tI---KdLks~~es~~Qkea~LEeqIkqLe~EIs~  188 (476)
                      +..+..++.++....+..+-...+- .+|+.+...........+--.   .+.+.+.-....+=..+.+.+.+|..+...
T Consensus       364 ~~ql~~le~~~~e~q~~~qe~~~e~-eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~  442 (980)
T KOG0980|consen  364 ENQLLALEGELQEQQREAQENREEQ-EQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHAD  442 (980)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555544444444 455555555555444444333   555555555555555566666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          189 WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQ  268 (476)
Q Consensus       189 ~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~Lee  268 (476)
                      .+++...+..+++.-..-....+.....|...+..++.+++.|..+--+..+.+..++.++..+..+++.|+..+.++.+
T Consensus       443 lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~q  522 (980)
T KOG0980|consen  443 LLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQ  522 (980)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            66666666666666655555666666677777777788888887776677777777777777777777777776555544


Q ss_pred             HHHHHHHHHH
Q 011839          269 ENRQLKENVS  278 (476)
Q Consensus       269 EIq~LkeqIs  278 (476)
                      +-.....++.
T Consensus       523 s~~~~~~~l~  532 (980)
T KOG0980|consen  523 SHNNQLAQLE  532 (980)
T ss_pred             HHHHHHHHHH
Confidence            4444444443

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=96.77  E-value=0.84  Score=47.12  Aligned_cols=234  Identities=15%  Similarity=0.184  Sum_probs=138.2

Q ss_pred             hhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHH
Q 011839          102 ESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIAN  181 (476)
Q Consensus       102 d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkq  181 (476)
                      +..+++-+-+....+.++.++..+......+..++ .+++.++..+.-...+||.-=++|+..+......-......-..
T Consensus        25 ~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek-~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~  103 (309)
T PF09728_consen   25 EALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEK-DQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEE  103 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566777777778888888888888888888888 88888888888888888888777777765554333333333333


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHhhhhHhhhhh---chH-----HHHhhhHHHH
Q 011839          182 LQSEKEFWLQ-KEAALEQKISQLRDESAALNMKRASLEERLKLL---EADKDSWTQMES---VSK-----ETIAGLSVDI  249 (476)
Q Consensus       182 Le~EIs~~~q-Ela~LepeiekL~~EeasLkQKLasLEeKL~~L---KaERD~WLkkEI---sLk-----e~IssL~~~i  249 (476)
                      -+.++..+++ .+..|...++.-.+.+..+.+.-..+.+++..|   +.-|...+.+-+   .|+     ..+.......
T Consensus       104 kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~  183 (309)
T PF09728_consen  104 KRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEA  183 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            4444443332 335555555555554444444444555555544   223333332222   111     1222222222


Q ss_pred             HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh--------------------cccchh
Q 011839          250 TQLRMQVVELEE-------SRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT--------------------SEQKDF  302 (476)
Q Consensus       250 ~sLq~QVe~Lee-------e~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~--------------------~~~e~~  302 (476)
                      .........+..       .+..+..+-..|+.+++.+...+..+...+.-++-                    .++..+
T Consensus       184 ~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~  263 (309)
T PF09728_consen  184 EQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTW  263 (309)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            233333334444       55556666667777777776666666665543321                    166677


Q ss_pred             hhHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhh
Q 011839          303 STQIEAAGALIDKLITENIELVEKVNDLSVKLDR  336 (476)
Q Consensus       303 ~~qie~a~~~v~kl~~en~~l~ekvneL~~~l~~  336 (476)
                      ...-|.+..-+-.++.|...+.+.+-.+..+++.
T Consensus       264 k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~k  297 (309)
T PF09728_consen  264 KSKWEKSNKALIEMAEERQKLEKELEKLKKKIEK  297 (309)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7778888888888888888777655555444443

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=96.72  E-value=0.44  Score=54.40  Aligned_cols=224  Identities=24%  Similarity=0.287  Sum_probs=123.1

Q ss_pred             hHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHhhhhHHHHHhh-----hHHH
Q 011839          110 TLEGTVQQLQNECDLYK----EKVQATLEETIQQLQRQNDLRMQ---KEATLEETIKQLRNQNDLHIQREG-----GLEM  177 (476)
Q Consensus       110 ~~Ek~IkqLqeEi~~lk----qkLE~llqEkIkQLq~E~~d~lQ---k~A~LE~tIKdLks~~es~~Qkea-----~LEe  177 (476)
                      =|+..+..|+.+|-..+    +=++-.|-++|++|..|.+.-+-   +-..|+.++.-|+.+..... ...     .|-+
T Consensus       433 ~Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~-~~~~~~~~~L~e  511 (762)
T PLN03229        433 ELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKAN-SQDQLMHPVLME  511 (762)
T ss_pred             cHHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcc-cccccccHHHHH
Confidence            36777777888877775    55566778999999999887665   56678888888886655541 100     2667


Q ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH----------------HHHHHHHh------HHHHHHHHHH------
Q 011839          178 NIANLQSEKEFWLQKE---AALEQKISQLRDESA----------------ALNMKRAS------LEERLKLLEA------  226 (476)
Q Consensus       178 qIkqLe~EIs~~~qEl---a~LepeiekL~~Eea----------------sLkQKLas------LEeKL~~LKa------  226 (476)
                      ++..|+.++.+.+.+-   -.|+.+++.|+..-.                .+++++.+      +-++...|++      
T Consensus       512 K~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e~~~~~~~kek~ea~~aev~~~g  591 (762)
T PLN03229        512 KIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIKEKMEALKAEVASSG  591 (762)
T ss_pred             HHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHhcccHHHHHHHHHHHHHHHhcC
Confidence            7888999988766653   356666666665543                33334444      4444443333      


Q ss_pred             -----hhhhHhhhhh-chHHHH--------hhhHHHHH-HHHHHHH--------HHHHHHHHHHHHHHHHHHHHH---HH
Q 011839          227 -----DKDSWTQMES-VSKETI--------AGLSVDIT-QLRMQVV--------ELEESRNNLLQENRQLKENVS---SL  280 (476)
Q Consensus       227 -----ERD~WLkkEI-sLke~I--------ssL~~~i~-sLq~QVe--------~Leee~s~LeeEIq~LkeqIs---eL  280 (476)
                           +=|.=|+..| .+++.|        .+..-... -+..++.        .++..+..|.++|++-.+.+-   +|
T Consensus       592 ~s~~~~~~~~lkeki~~~~~Ei~~eie~v~~S~gL~~~~~~k~e~a~~~~~p~~~~k~KIe~L~~eIkkkIe~av~ss~L  671 (762)
T PLN03229        592 ASSGDELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQEKIESLNEEINKKIERVIRSSDL  671 (762)
T ss_pred             ccccCCCCHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhhhhcccccCCChhhHHHHHHHHHHHHHHHHHHhcchhH
Confidence                 1111122222 222222        11111111 1111111        124455556666655444432   67


Q ss_pred             HHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHHHHHHH---HHHHHhhhhhhhhh
Q 011839          281 RSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITEN---IELVEKVNDLSVKL  334 (476)
Q Consensus       281 qs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl~~en---~~l~ekvneL~~~l  334 (476)
                      ...+..|+-++..+.-+---.....|+|....+.+-+.+=   .+|+||--+|...+
T Consensus       672 K~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~~~a~~~~~lkek~e~l~~e~  728 (762)
T PLN03229        672 KSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNSSELKEKFEELEAEL  728 (762)
T ss_pred             HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHH
Confidence            7778888877744322211222356666666665555542   36777777775544

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=96.72  E-value=0.92  Score=46.87  Aligned_cols=111  Identities=23%  Similarity=0.259  Sum_probs=46.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhh
Q 011839          172 EGGLEMNIANLQSEKEFWLQ------KEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAG  244 (476)
Q Consensus       172 ea~LEeqIkqLe~EIs~~~q------Ela~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~Iss  244 (476)
                      +-.+-++|.+|+.++..+..      ++..+..++..++.+-..+..+++.+-.+.+..        +.+| .+-..+-.
T Consensus       133 E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~--------he~m~k~~~~~De  204 (294)
T COG1340         133 ERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEY--------HEEMIKLFEEADE  204 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Confidence            33355555555555554331      223333444444444444444444443333222        2222 33333333


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011839          245 LSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK  290 (476)
Q Consensus       245 L~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeee  290 (476)
                      ++.....+-.++..+...++.+..++..++..|.++...|..|...
T Consensus       205 ~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~  250 (294)
T COG1340         205 LRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAK  250 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444444444444444444444444433

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=96.62  E-value=0.75  Score=44.65  Aligned_cols=141  Identities=19%  Similarity=0.271  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 011839          113 GTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQK  192 (476)
Q Consensus       113 k~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qE  192 (476)
                      ..|+.|.+++...+.. +....-.+.++..++..+..-.+.++..+..|+..              +..++....    .
T Consensus        27 ~lIksLKeei~emkk~-e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~--------------L~~y~kdK~----~   87 (201)
T PF13851_consen   27 ELIKSLKEEIAEMKKK-EERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQ--------------LKNYEKDKQ----S   87 (201)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------------HHHHHHHHH----H
Confidence            4567777777777766 33333334555555555555555555555555544              444433332    2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          193 EAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENR  271 (476)
Q Consensus       193 la~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq  271 (476)
                      +..++.++..+..+-..++..-..|+.+...|+.|||.|..+-. .+...-..-...+.-|..++..|...+...+.++.
T Consensus        88 L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~  167 (201)
T PF13851_consen   88 LQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLN  167 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333344444444444444444445555566666554443 33333333333333444445554444444444433


Q ss_pred             H
Q 011839          272 Q  272 (476)
Q Consensus       272 ~  272 (476)
                      +
T Consensus       168 e  168 (201)
T PF13851_consen  168 E  168 (201)
T ss_pred             H
Confidence            3

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.61  E-value=0.3  Score=55.90  Aligned_cols=84  Identities=19%  Similarity=0.238  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          118 LQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALE  197 (476)
Q Consensus       118 LqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~Le  197 (476)
                      |...+..+...|++ |..++.+|....-+.--.+++....|..+....+........|..+|+.++...-....|...+.
T Consensus       435 ~nak~~ql~~elet-Ln~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~  513 (1118)
T KOG1029|consen  435 LNAKKKQLQQELET-LNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELN  513 (1118)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            55555666666544 44444666555555555555555555555555555555555555555555544444444444444


Q ss_pred             HHHHH
Q 011839          198 QKISQ  202 (476)
Q Consensus       198 peiek  202 (476)
                      .++.+
T Consensus       514 ~qlkq  518 (1118)
T KOG1029|consen  514 HQLKQ  518 (1118)
T ss_pred             HHHHH
Confidence            44433

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.58  E-value=0.47  Score=54.11  Aligned_cols=88  Identities=23%  Similarity=0.248  Sum_probs=50.2

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          130 QATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAA  209 (476)
Q Consensus       130 E~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~Eeas  209 (476)
                      |+.+..+|..|+.|....-+..+........|...+.-.......++.+..+|+.+|...+..+.++-.+|..|.++|=+
T Consensus        29 E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENis  108 (717)
T PF09730_consen   29 EAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENIS  108 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            44444444555555555555555555555555555555555555566666666667776666777777777777777655


Q ss_pred             HHHHHHhH
Q 011839          210 LNMKRASL  217 (476)
Q Consensus       210 LkQKLasL  217 (476)
                      |-.....|
T Consensus       109 lQKqvs~L  116 (717)
T PF09730_consen  109 LQKQVSVL  116 (717)
T ss_pred             HHHHHHHH
Confidence            54444433

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PRK01156 chromosome segregation protein; Provisional

Probab=96.56  E-value=2.2  Score=49.14  Aligned_cols=12  Identities=25%  Similarity=0.293  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHH
Q 011839          175 LEMNIANLQSEK  186 (476)
Q Consensus       175 LEeqIkqLe~EI  186 (476)
                      ++.+|+.++..+
T Consensus       254 ~e~~i~ele~~l  265 (895)
T PRK01156        254 YESEIKTAESDL  265 (895)
T ss_pred             HHHHHHHHHHHH
Confidence            333444444433

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=96.55  E-value=0.36  Score=44.84  Aligned_cols=82  Identities=23%  Similarity=0.271  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          202 QLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR  281 (476)
Q Consensus       202 kL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLq  281 (476)
                      .|..+...+...+..++..+..|..+|+.|.+.==..+..|+.|..-+.++..-+..++.+.   ..-.+.++..+..|+
T Consensus        56 ~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek---~q~~e~~~~~ve~L~  132 (140)
T PF10473_consen   56 TLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEK---VQLKEESKSAVEMLQ  132 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            33333334444444445555555566665443333556666666666666666666665552   222333333444444


Q ss_pred             Hhhhh
Q 011839          282 SQLSS  286 (476)
Q Consensus       282 s~lqe  286 (476)
                      .++..
T Consensus       133 ~ql~~  137 (140)
T PF10473_consen  133 KQLKE  137 (140)
T ss_pred             HHHhh
Confidence            44433

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=96.48  E-value=1  Score=44.38  Aligned_cols=139  Identities=21%  Similarity=0.268  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          133 LEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNM  212 (476)
Q Consensus       133 lqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQ  212 (476)
                      ....|..+..+++.+....+++|-...+|....+...+--..+...=..|+..+......+.....+|..|+.-.   ..
T Consensus        67 ~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hA---ee  143 (207)
T PF05010_consen   67 SEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHA---EE  143 (207)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence            344456666666666666666666666666554433332222222222222222222223333333333333221   13


Q ss_pred             HHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011839          213 KRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL  284 (476)
Q Consensus       213 KLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~l  284 (476)
                      +|...-..+..+..          .....+..++..+...+.++..|+..+.....+|++|..--++|.+.+
T Consensus       144 kL~~ANeei~~v~~----------~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k~  205 (207)
T PF05010_consen  144 KLEKANEEIAQVRS----------KHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISKM  205 (207)
T ss_pred             HHHHHHHHHHHHHH----------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333333333332          233377788888888899999999999999999999988888886654

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.47  E-value=0.44  Score=52.88  Aligned_cols=103  Identities=17%  Similarity=0.256  Sum_probs=48.1

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhc----hHHHHhhh
Q 011839          170 QREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESV----SKETIAGL  245 (476)
Q Consensus       170 Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIs----Lke~IssL  245 (476)
                      +++..|.+..+.|+..+.+...=+..++.+-..+......++..+...|+++..|+.++|. |+..|.    .-+.+..+
T Consensus       259 ~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~-Lk~~Ie~Q~iS~~dve~m  337 (581)
T KOG0995|consen  259 GKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDE-LKKQIELQGISGEDVERM  337 (581)
T ss_pred             chHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCHHHHHHH
Confidence            3334444444444444444444444444444444444444444445555555555555555 233332    12344455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          246 SVDITQLRMQVVELEESRNNLLQENRQL  273 (476)
Q Consensus       246 ~~~i~sLq~QVe~Leee~s~LeeEIq~L  273 (476)
                      +.+...|...+..+..+++.|.+++-.+
T Consensus       338 n~Er~~l~r~l~~i~~~~d~l~k~vw~~  365 (581)
T KOG0995|consen  338 NLERNKLKRELNKIQSELDRLSKEVWEL  365 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            5555555555555555555554444433

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.45  E-value=0.22  Score=56.76  Aligned_cols=29  Identities=10%  Similarity=0.163  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011839          188 FWLQKEAALEQKISQLRDESAALNMKRAS  216 (476)
Q Consensus       188 ~~~qEla~LepeiekL~~EeasLkQKLas  216 (476)
                      .|.+|+..|..++..|......++.++..
T Consensus       636 ~~~~EL~~~~~~l~~l~~si~~lk~k~~~  664 (717)
T PF10168_consen  636 EFKKELERMKDQLQDLKASIEQLKKKLDY  664 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555544444444444443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.43  E-value=0.00077  Score=75.47  Aligned_cols=25  Identities=28%  Similarity=0.569  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHH
Q 011839          136 TIQQLQRQNDLRMQKEATLEETIKQ  160 (476)
Q Consensus       136 kIkQLq~E~~d~lQk~A~LE~tIKd  160 (476)
                      +++.|+.++..+++..+.+|..++.
T Consensus       333 qvk~Lee~N~~l~e~~~~LEeel~~  357 (713)
T PF05622_consen  333 QVKELEEDNAVLLETKAMLEEELKK  357 (713)
T ss_dssp             -------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555555555555544

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.43  E-value=1.2  Score=51.29  Aligned_cols=72  Identities=18%  Similarity=0.164  Sum_probs=45.4

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHH
Q 011839          108 EATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE  187 (476)
Q Consensus       108 e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs  187 (476)
                      +-+.++...+|+.-+..+        .+-|+.++.+...+-|..-.|++..+.|+++...-....+.|.++...|+....
T Consensus       645 ~~~~~k~~e~l~~~~~ky--------K~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg  716 (970)
T KOG0946|consen  645 TQLAEKYHEELDDIQQKY--------KGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG  716 (970)
T ss_pred             hHHHHHHHHHHHHHHHHH--------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            345555555555554443        344577777777777777777777777777666666666666666666655544

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.38  E-value=0.43  Score=44.06  Aligned_cols=63  Identities=27%  Similarity=0.314  Sum_probs=33.5

Q ss_pred             HHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011839          159 KQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL  221 (476)
Q Consensus       159 KdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL  221 (476)
                      ..|+...+.+..+-..++.+++.|+.....+.+++..|..++..|..+...+..++..+...+
T Consensus         3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l   65 (143)
T PF12718_consen    3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL   65 (143)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555566666666665555555555555555555555544444444443333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.34  E-value=0.00093  Score=74.81  Aligned_cols=99  Identities=26%  Similarity=0.330  Sum_probs=0.0

Q ss_pred             HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhH--hhhhh-chHHHHhh-------h
Q 011839          179 IANLQSEKE---FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW--TQMES-VSKETIAG-------L  245 (476)
Q Consensus       179 IkqLe~EIs---~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~W--LkkEI-sLke~Iss-------L  245 (476)
                      +..|+.++.   +++.++..++.++..|.+.+..|.+....+|+.+...-+-|...  ++++| .++..+..       +
T Consensus       310 ~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l  389 (713)
T PF05622_consen  310 ADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKL  389 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444   44555677888888899999888888888888887653322221  23333 33333322       2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          246 SVDITQLRMQVVELEESRNNLLQENRQLKENV  277 (476)
Q Consensus       246 ~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqI  277 (476)
                      ..++..|+.++..+..++..+..+.+.|++.+
T Consensus       390 ~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~  421 (713)
T PF05622_consen  390 EFENKQLEEKLEALEEEKERLQEERDSLRETN  421 (713)
T ss_dssp             --------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23344444444444444444444444444433

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=96.34  E-value=0.74  Score=54.92  Aligned_cols=44  Identities=9%  Similarity=-0.019  Sum_probs=25.5

Q ss_pred             chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL  280 (476)
Q Consensus       237 sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseL  280 (476)
                      .++..+.+.++-..=++.+...+..++..++.+++.|++.++..
T Consensus       191 ~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~k  234 (1109)
T PRK10929        191 ELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQ  234 (1109)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444455555556666666777777777766654

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=96.34  E-value=1.6  Score=45.17  Aligned_cols=72  Identities=22%  Similarity=0.259  Sum_probs=38.8

Q ss_pred             HHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 011839           92 ETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQ  164 (476)
Q Consensus        92 eti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~  164 (476)
                      .-+..|+...+-|+.+-..+...+..+..+.+.+..++.-+. +.++.+..+++.....+..+-..-.++...
T Consensus        13 ~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~-e~~~elr~~rdeineev~elK~kR~ein~k   84 (294)
T COG1340          13 LKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELR-EKAQELREERDEINEEVQELKEKRDEINAK   84 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333355666666666666666666666666666665544322 222555555555555555555444444443

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.32  E-value=1.2  Score=51.08  Aligned_cols=70  Identities=21%  Similarity=0.141  Sum_probs=30.5

Q ss_pred             HHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011839          147 RMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRAS  216 (476)
Q Consensus       147 ~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLas  216 (476)
                      +...+..++..++.++..+.........|......+.........+...|..++..++-.+.-+.+-..+
T Consensus        32 ~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyse  101 (717)
T PF09730_consen   32 LQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSE  101 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence            3344444444444444444444444444444444444444444444444444444444444333333333

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PRK11281 hypothetical protein; Provisional

Probab=96.31  E-value=0.77  Score=54.82  Aligned_cols=39  Identities=21%  Similarity=0.124  Sum_probs=21.9

Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          242 IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL  280 (476)
Q Consensus       242 IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseL  280 (476)
                      +.+...-..-++.+...+..++..++.+++.|++.++..
T Consensus       215 l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~k  253 (1113)
T PRK11281        215 LEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSK  253 (1113)
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333344445555556666666666666666666654

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.30  E-value=0.061  Score=55.37  Aligned_cols=56  Identities=30%  Similarity=0.408  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 011839          175 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS  230 (476)
Q Consensus       175 LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~  230 (476)
                      ....+..++.++....+++..+..++..|..+...+.+.+..++.+...|+.+...
T Consensus        41 ~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~   96 (314)
T PF04111_consen   41 SEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEE   96 (314)
T ss_dssp             -HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556667777777777777777777777777777777777777766666443333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=96.25  E-value=3.4  Score=48.03  Aligned_cols=25  Identities=12%  Similarity=0.207  Sum_probs=17.2

Q ss_pred             hhhHhhHHHHHHHHHHHHHHHHHHH
Q 011839          105 IQKEATLEGTVQQLQNECDLYKEKV  129 (476)
Q Consensus       105 ~~~e~~~Ek~IkqLqeEi~~lkqkL  129 (476)
                      .|.+.++...+-.|++.+..++..+
T Consensus        84 tqetriyRrdv~llEddlk~~~sQi  108 (1265)
T KOG0976|consen   84 TQETRIYRRDVNLLEDDLKHHESQI  108 (1265)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            5667777777777777776666665

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.25  E-value=1.3  Score=43.10  Aligned_cols=19  Identities=32%  Similarity=0.426  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 011839          114 TVQQLQNECDLYKEKVQAT  132 (476)
Q Consensus       114 ~IkqLqeEi~~lkqkLE~l  132 (476)
                      .|..|+.++..+..+++.+
T Consensus        13 ki~~L~n~l~elq~~l~~l   31 (194)
T PF15619_consen   13 KIKELQNELAELQRKLQEL   31 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3555666666655555443

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.20  E-value=2.3  Score=45.72  Aligned_cols=106  Identities=10%  Similarity=0.141  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          118 LQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALE  197 (476)
Q Consensus       118 LqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~Le  197 (476)
                      +...|..++-+|+....++ .+.+.+++..-++..+.-..-+-.+.+.....++..+....+.++........+++..+.
T Consensus        79 i~~qlr~~rtel~~a~~~k-~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~  157 (499)
T COG4372          79 IRPQLRALRTELGTAQGEK-RAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLA  157 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555555555 667776666666666666666666666666666666666666666666666667777777


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011839          198 QKISQLRDESAALNMKRASLEERLKLL  224 (476)
Q Consensus       198 peiekL~~EeasLkQKLasLEeKL~~L  224 (476)
                      .++.+|..+..++--.-..|+.-..+|
T Consensus       158 ~qr~ql~aq~qsl~a~~k~LQ~s~~Ql  184 (499)
T COG4372         158 EQRRQLEAQAQSLQASQKQLQASATQL  184 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777766666555444444434444

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=96.14  E-value=1  Score=48.07  Aligned_cols=178  Identities=19%  Similarity=0.176  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 011839          137 IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI-QREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDES--------  207 (476)
Q Consensus       137 IkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~-Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~Ee--------  207 (476)
                      +.-++.+....-++....|..+.+|+.++.... .....+..+|..++........++..+...+..|...-        
T Consensus       163 ~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~  242 (498)
T TIGR03007       163 QRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLL  242 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcC
Confidence            345566666666677777777777766554321 12223455666666666666666666666666655432        


Q ss_pred             -------HHHHHHHHhHHHHHHHHHH---hhhhHhhhhh-chHHHHhhhHHHHHHHHH--------------HHHHHHHH
Q 011839          208 -------AALNMKRASLEERLKLLEA---DKDSWTQMES-VSKETIAGLSVDITQLRM--------------QVVELEES  262 (476)
Q Consensus       208 -------asLkQKLasLEeKL~~LKa---ERD~WLkkEI-sLke~IssL~~~i~sLq~--------------QVe~Leee  262 (476)
                             ..+..++..++.++..|..   +..    -.+ .++.+|..++..+.....              -...|...
T Consensus       243 ~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~h----P~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  318 (498)
T TIGR03007       243 AGSSVANSELDGRIEALEKQLDALRLRYTDKH----PDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIE  318 (498)
T ss_pred             cccccCCCchHHHHHHHHHHHHHHHHHhcccC----hHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHH
Confidence                   2455556666666555511   111    111 333333333333222110              01223334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh--hhcccchhhhHHHHHHhHHHHHHH
Q 011839          263 RNNLLQENRQLKENVSSLRSQLSSDESKKLQH--ATSEQKDFSTQIEAAGALIDKLIT  318 (476)
Q Consensus       263 ~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~--~~~~~e~~~~qie~a~~~v~kl~~  318 (476)
                      +..+..++..++.++..+..++..++.+....  ...+...|..+.+.+....+.++.
T Consensus       319 l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~  376 (498)
T TIGR03007       319 LAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLT  376 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444445555555544444221  122556677777778777777776

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.13  E-value=3.4  Score=47.04  Aligned_cols=182  Identities=18%  Similarity=0.148  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHH
Q 011839          111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWL  190 (476)
Q Consensus       111 ~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~  190 (476)
                      +...+..+++.++.....++-.++.-+.+.++-+...++-...++.+++++.+.....-+.-+.++.+....+.......
T Consensus       106 ~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~  185 (716)
T KOG4593|consen  106 LLTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLH  185 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33456666677777777776666666667777777777777777777777776666555555555555444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhh--hhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          191 QKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQ--MESVSKETIAGLSVDITQLRMQVVELEESRNNLLQ  268 (476)
Q Consensus       191 qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLk--kEIsLke~IssL~~~i~sLq~QVe~Leee~s~Lee  268 (476)
                      ..+...+.+|..-...-....++.+...+.+..+...+..--.  +.+.....+..++.....--.+.+.++.+...+-+
T Consensus       186 s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~e  265 (716)
T KOG4593|consen  186 SELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLRE  265 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444444444444333322111  11133334455555555555555555556666666


Q ss_pred             HHHHHHHHH---HHHHHhhhhhhhhhh
Q 011839          269 ENRQLKENV---SSLRSQLSSDESKKL  292 (476)
Q Consensus       269 EIq~LkeqI---seLqs~lqeLeeei~  292 (476)
                      +...+++..   .-|+..+..|+....
T Consensus       266 e~~~~re~~~tv~~LqeE~e~Lqskl~  292 (716)
T KOG4593|consen  266 ELATLRENRETVGLLQEELEGLQSKLG  292 (716)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            655443332   244555555544444

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=96.10  E-value=2.7  Score=45.50  Aligned_cols=18  Identities=6%  Similarity=-0.027  Sum_probs=7.7

Q ss_pred             chhhhHHHHHHhHHHHHH
Q 011839          300 KDFSTQIEAAGALIDKLI  317 (476)
Q Consensus       300 e~~~~qie~a~~~v~kl~  317 (476)
                      +.|.-+-..+.-++.++-
T Consensus       227 ~eL~~~~~~L~~~Ias~e  244 (420)
T COG4942         227 EELRANESRLKNEIASAE  244 (420)
T ss_pred             HHHHhHHHHHHHHHHHHH
Confidence            334434444444444444

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=96.10  E-value=2.9  Score=45.82  Aligned_cols=124  Identities=22%  Similarity=0.292  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhh---hhh----hHhhHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHH
Q 011839           77 ERQHLLQREAMAILEETVKHLRNERES---HIQ----KEATLEGTVQQLQNECDLYKEKVQA--TLEETIQQLQRQNDLR  147 (476)
Q Consensus        77 ~~~~~~q~e~~~~~eeti~~l~~e~d~---~~~----~e~~~Ek~IkqLqeEi~~lkqkLE~--llqEkIkQLq~E~~d~  147 (476)
                      |..+-| +|+|| |-|+|++|+..|--   .||    .-..||+.|+.|+..+..-..=+.+  +|.+.|..|=++.=..
T Consensus       304 Eslqpl-eedma-LNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~v  381 (527)
T PF15066_consen  304 ESLQPL-EEDMA-LNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRV  381 (527)
T ss_pred             hccCCc-HHHHH-HHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHh
Confidence            555566 46665 67899999887754   233    4567888888888776542221111  1233333333344444


Q ss_pred             HHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          148 MQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAA  209 (476)
Q Consensus       148 lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~Eeas  209 (476)
                      +-....++-++.+|+..       -+.-+..|..-+.++..+..++-.++..|-.|+++...
T Consensus       382 iLEKnd~~k~lqnLqe~-------la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~  436 (527)
T PF15066_consen  382 ILEKNDIEKTLQNLQEA-------LANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMT  436 (527)
T ss_pred             hhhhhhHHHHHHHHHHH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            44555555555555543       23333344555666777777888888888888777643

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=96.07  E-value=1.4  Score=45.14  Aligned_cols=43  Identities=21%  Similarity=0.289  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 011839          176 EMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLE  218 (476)
Q Consensus       176 EeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLE  218 (476)
                      ..+...++..+..+..++..+..++..+......+...+...+
T Consensus       136 ~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~  178 (423)
T TIGR01843       136 ESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVIS  178 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444433433333333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.05  E-value=0.045  Score=52.22  Aligned_cols=108  Identities=29%  Similarity=0.369  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011839          189 WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLL  267 (476)
Q Consensus       189 ~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~Le  267 (476)
                      ....+..+..++..+....+.+.+++..+..++..|..        ++ .....|..+...+..|+.++..++.++....
T Consensus        72 le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~--------~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~  143 (194)
T PF08614_consen   72 LEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEK--------ELSEKERRLAELEAELAQLEEKIKDLEEELKEKN  143 (194)
T ss_dssp             --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccchhhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555666666666666666555554322        22 2333444444444445555555555544455


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHHHHHHHHHHHHh
Q 011839          268 QENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEK  326 (476)
Q Consensus       268 eEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl~~en~~l~ek  326 (476)
                      .-++.+++.+..|+.++..+                      ..=+.+|-.||.+||++
T Consensus       144 k~~e~l~DE~~~L~l~~~~~----------------------e~k~~~l~~En~~Lv~R  180 (194)
T PF08614_consen  144 KANEILQDELQALQLQLNML----------------------EEKLRKLEEENRELVER  180 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHH
Confidence            44544444444444333333                      33445788899998874

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=96.01  E-value=2.3  Score=44.08  Aligned_cols=169  Identities=18%  Similarity=0.214  Sum_probs=106.9

Q ss_pred             HHHHHHHHhhhhhhh----hhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 011839           89 ILEETVKHLRNERES----HIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQ  164 (476)
Q Consensus        89 ~~eeti~~l~~e~d~----~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~  164 (476)
                      +|.+-|-.|+-|.|.    +..||--.-+.|.-+.+.++.+...|+. ..++   |-...-.+.+....+-..-.-|.++
T Consensus         3 ~Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKL-neE~---ltkTi~qy~~QLn~L~aENt~L~Sk   78 (305)
T PF14915_consen    3 MLQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKL-NEET---LTKTIFQYNGQLNVLKAENTMLNSK   78 (305)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHH---HHHHHHHHhhhHHHHHHHHHHHhHH
Confidence            344445555555554    5778888888888888888888877654 2333   2222333333444444445556666


Q ss_pred             hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhh
Q 011839          165 NDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAG  244 (476)
Q Consensus       165 ~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~Iss  244 (476)
                      ++.-.|.+..|+..|..+....+...       .++.+-.          .+--.--..++.+||.|++-.-.+.-.++.
T Consensus        79 Le~EKq~kerLEtEiES~rsRLaaAi-------~d~dqsq----------~skrdlelafqr~rdEw~~lqdkmn~d~S~  141 (305)
T PF14915_consen   79 LEKEKQNKERLETEIESYRSRLAAAI-------QDHDQSQ----------TSKRDLELAFQRARDEWVRLQDKMNSDVSN  141 (305)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHH----------hhHHHHHHHHHHHhhHHHHHHHHhcchHHh
Confidence            66666666666555555554444322       2222211          111111124689999999988888889999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          245 LSVDITQLRMQVVELEESRNNLLQENRQLKENVS  278 (476)
Q Consensus       245 L~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIs  278 (476)
                      +...+..|..++...++..++|..+....+..+-
T Consensus       142 lkd~ne~LsQqLskaesK~nsLe~elh~trdaLr  175 (305)
T PF14915_consen  142 LKDNNEILSQQLSKAESKFNSLEIELHHTRDALR  175 (305)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998887776666555

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=95.98  E-value=4.1  Score=46.58  Aligned_cols=14  Identities=50%  Similarity=0.852  Sum_probs=12.3

Q ss_pred             HHHHHHHhhhhhhh
Q 011839           90 LEETVKHLRNERES  103 (476)
Q Consensus        90 ~eeti~~l~~e~d~  103 (476)
                      |-+|++||+++.|.
T Consensus       247 L~~tVq~L~edR~~  260 (739)
T PF07111_consen  247 LLETVQHLQEDRDA  260 (739)
T ss_pred             HHHHHHHHHHHHHH
Confidence            67899999999887

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=95.93  E-value=3.5  Score=46.77  Aligned_cols=106  Identities=20%  Similarity=0.185  Sum_probs=55.7

Q ss_pred             HHHHHHHHhhhhhhhhh-hhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhH
Q 011839           89 ILEETVKHLRNERESHI-QKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL  167 (476)
Q Consensus        89 ~~eeti~~l~~e~d~~~-~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es  167 (476)
                      .++|.+.+|+..+++.+ |--++.+..               ++ .-|+|++|+.=.+.+.++....|+.+-   .+.-+
T Consensus       108 ~yQerLaRLe~dkesL~LQvsvLteqV---------------ea-QgEKIrDLE~cie~kr~kLnatEEmLQ---qells  168 (861)
T KOG1899|consen  108 EYQERLARLEMDKESLQLQVSVLTEQV---------------EA-QGEKIRDLETCIEEKRNKLNATEEMLQ---QELLS  168 (861)
T ss_pred             HHHHHHHHHhcchhhheehHHHHHHHH---------------HH-hhhhHHHHHHHHHHHHhhhchHHHHHH---HHHHh
Confidence            57899999999999874 444443322               11 334445555544444444444444321   11110


Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011839          168 HIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL  224 (476)
Q Consensus       168 ~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L  224 (476)
                                 +..|+..+-....+++.|+-+|..+..+....+.|+...|.-++.+
T Consensus       169 -----------rtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qev  214 (861)
T KOG1899|consen  169 -----------RTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEV  214 (861)
T ss_pred             -----------hhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHH
Confidence                       1334444444555555555566666666655666666555544443

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.90  E-value=4.3  Score=48.26  Aligned_cols=196  Identities=15%  Similarity=0.167  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhhhhH------HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          140 LQRQNDLRMQKEATLEETIKQLRNQNDL------HIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMK  213 (476)
Q Consensus       140 Lq~E~~d~lQk~A~LE~tIKdLks~~es------~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQK  213 (476)
                      ...+...++++.+++.-.|+..+.....      -.++-+....+|...+..+.............|+.+.++..++..+
T Consensus       260 ~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~  339 (1141)
T KOG0018|consen  260 RKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGA  339 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            3344556677777888788777776655      2333444556666666666666666666667777777777666666


Q ss_pred             HHhHHHHHHHHHHhhhhH-------------hhhhh--chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          214 RASLEERLKLLEADKDSW-------------TQMES--VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS  278 (476)
Q Consensus       214 LasLEeKL~~LKaERD~W-------------LkkEI--sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIs  278 (476)
                      ...++.++..--..|+..             |+.|-  .-...+..++.+...-+.-..++......++..+..+..++.
T Consensus       340 ~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sve  419 (1141)
T KOG0018|consen  340 KEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEALEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVE  419 (1141)
T ss_pred             HHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            666666655432222210             11111  113334444444444444444445555555555666666665


Q ss_pred             HHHHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhh
Q 011839          279 SLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDR  336 (476)
Q Consensus       279 eLqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl~~en~~l~ekvneL~~~l~~  336 (476)
                      .+..++..|...+..... +.+.+...+......+..+-.+-+++-++..+.-.+|..
T Consensus       420 r~~~~~~~L~~~i~s~~~-~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~d  476 (1141)
T KOG0018|consen  420 RLDKRRNKLAAKITSLSR-SYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLD  476 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Confidence            555555555555432211 222333344444555555555555555544444444433

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=95.90  E-value=0.0021  Score=73.81  Aligned_cols=141  Identities=22%  Similarity=0.282  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          140 LQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANL-------QSEKEFWLQKEAALEQKISQLRDESAALNM  212 (476)
Q Consensus       140 Lq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqL-------e~EIs~~~qEla~LepeiekL~~EeasLkQ  212 (476)
                      ++.....+-+....++..+.+|...++.....+...+..++.|       +..++.....+..+.....+|..+++.|..
T Consensus       143 lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~  222 (859)
T PF01576_consen  143 LQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTR  222 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444445555555555555555554444444333333       333334444445555556666666666666


Q ss_pred             HHHhHHHHHHHHHHhhhhHhhhhh---------------chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          213 KRASLEERLKLLEADKDSWTQMES---------------VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENV  277 (476)
Q Consensus       213 KLasLEeKL~~LKaERD~WLkkEI---------------sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqI  277 (476)
                      .+...+.++..|...+..| ..++               .|...+..+..++..|..++..-...+..|...+..+...+
T Consensus       223 qLee~e~~~~~l~r~k~~L-~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El  301 (859)
T PF01576_consen  223 QLEEAESQLSQLQREKSSL-ESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAEL  301 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHH
Confidence            6666666666664444432 1222               23334444444444554444444444444444444444444


Q ss_pred             HHHH
Q 011839          278 SSLR  281 (476)
Q Consensus       278 seLq  281 (476)
                      ..|+
T Consensus       302 ~~~k  305 (859)
T PF01576_consen  302 EQWK  305 (859)
T ss_dssp             ----
T ss_pred             HHHH
Confidence            4443

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.89  E-value=4  Score=45.75  Aligned_cols=110  Identities=19%  Similarity=0.221  Sum_probs=55.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHH
Q 011839          110 TLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW  189 (476)
Q Consensus       110 ~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~  189 (476)
                      .|+..|..|+.+.+.+.+.|+.+. +.+-+...    .-+++|.-.++-.  .+-+.-...++...-.+|-.|+.+..++
T Consensus        47 ~Lkqq~eEleaeyd~~R~Eldqtk-eal~q~~s----~hkk~~~~g~e~E--esLLqESaakE~~yl~kI~eleneLKq~  119 (772)
T KOG0999|consen   47 DLKQQLEELEAEYDLARTELDQTK-EALGQYRS----QHKKVARDGEERE--ESLLQESAAKEEYYLQKILELENELKQL  119 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH----HHHHhhccchhhH--HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            456677777777777777764422 22222222    2222222211110  1111122233444445555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 011839          190 LQKEAALEQKISQLRDESAALNMKRASLEERLKLLEA  226 (476)
Q Consensus       190 ~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKa  226 (476)
                      .+++.....+.+.+......+...-+.+|..+.+|++
T Consensus       120 r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~  156 (772)
T KOG0999|consen  120 RQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRD  156 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence            5566666666666666666666655666666666633

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=95.80  E-value=1.4  Score=39.81  Aligned_cols=24  Identities=25%  Similarity=0.468  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          254 MQVVELEESRNNLLQENRQLKENV  277 (476)
Q Consensus       254 ~QVe~Leee~s~LeeEIq~LkeqI  277 (476)
                      .++..++..+..|..+|.-|-.+|
T Consensus       105 ~e~~~~~~r~~dL~~QN~lLh~Ql  128 (132)
T PF07926_consen  105 KELSELEQRIEDLNEQNKLLHDQL  128 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444443333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>smart00787 Spc7 Spc7 kinetochore protein

Probab=95.80  E-value=0.81  Score=47.37  Aligned_cols=37  Identities=24%  Similarity=0.396  Sum_probs=17.5

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011839          127 EKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRN  163 (476)
Q Consensus       127 qkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks  163 (476)
                      ..|+.-|.+.+..++.|...+.+..+.+..-+-.|+.
T Consensus       143 egLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~  179 (312)
T smart00787      143 EGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRD  179 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444455555555555544444444444443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=95.69  E-value=2.7  Score=47.48  Aligned_cols=174  Identities=17%  Similarity=0.173  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q 011839          138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQ-REGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDE----------  206 (476)
Q Consensus       138 kQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Q-kea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~E----------  206 (476)
                      .-|+.+...+-++....|..+..|+.++..-.- .....+++|..|.........+......++..++..          
T Consensus       197 ~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~  276 (754)
T TIGR01005       197 DFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVL  276 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccch
Confidence            556666666666777777777777765544221 112223555555555555444444444444444432          


Q ss_pred             -------------HHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          207 -------------SAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQ  272 (476)
Q Consensus       207 -------------easLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~  272 (476)
                                   ...++.++..++.++..|....-. -+-.+ .++.+|..++..+...      +..-...+..+.+.
T Consensus       277 ~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~-~hP~v~~l~~qi~~l~~~i~~e------~~~~~~~~~~~~~~  349 (754)
T TIGR01005       277 PEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLA-NHPRVVAAKSSLADLDAQIRSE------LQKITKSLLMQADA  349 (754)
T ss_pred             hhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence                         222333333333333333111000 00112 3333333333332221      11122233344444


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhh--hhcccchhhhHHHHHHhHHHHHHH
Q 011839          273 LKENVSSLRSQLSSDESKKLQH--ATSEQKDFSTQIEAAGALIDKLIT  318 (476)
Q Consensus       273 LkeqIseLqs~lqeLeeei~~~--~~~~~e~~~~qie~a~~~v~kl~~  318 (476)
                      .+.....++.++.+++..+...  ...+...|..+.+.+..+.+.|+.
T Consensus       350 a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~  397 (754)
T TIGR01005       350 AQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLT  397 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444445555555555444322  122666788888888888888877

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=95.68  E-value=0.028  Score=63.22  Aligned_cols=77  Identities=19%  Similarity=0.296  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhhhhhhhhc-----ccchhhhHHHHHHhHHHHHHHHHHHHHH
Q 011839          253 RMQVVELEESRNNLLQENRQLKENVSSLRSQLSS--DESKKLQHATS-----EQKDFSTQIEAAGALIDKLITENIELVE  325 (476)
Q Consensus       253 q~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqe--Leeei~~~~~~-----~~e~~~~qie~a~~~v~kl~~en~~l~e  325 (476)
                      ..++..|..++..|..++..|+..+..|..+|..  |.-.+.+..+.     .|=....+- ...+.++.|-.||+.|..
T Consensus       502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~-~k~~~l~~L~~En~~L~~  580 (722)
T PF05557_consen  502 SEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQ-IKKSTLEALQAENEDLLA  580 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            3344445555555555555555555555555443  11112122111     222222221 235789999999999999


Q ss_pred             hhhhh
Q 011839          326 KVNDL  330 (476)
Q Consensus       326 kvneL  330 (476)
                      .+..|
T Consensus       581 ~l~~l  585 (722)
T PF05557_consen  581 RLRSL  585 (722)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            88776

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.67  E-value=2.8  Score=47.72  Aligned_cols=200  Identities=21%  Similarity=0.149  Sum_probs=115.4

Q ss_pred             HHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHH----HHHhHHHHHHHHHh
Q 011839           91 EETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDL---RMQ----KEATLEETIKQLRN  163 (476)
Q Consensus        91 eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d---~lQ----k~A~LE~tIKdLks  163 (476)
                      +--+|+|.+-.....|+-+++-..|..|-..+..++-..+....+. -++-.+++.   +.+    -.+.++....++-.
T Consensus       383 ~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l-~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~  461 (716)
T KOG4593|consen  383 ETKLKELHETLARRLQKRALLLTQERDLNRAILGSKDDEKRLAEEL-PQVTKEREQLKGLVQKVDKHSLEMEASMEELYR  461 (716)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHh-HHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHH
Confidence            3446667666677788999999999999999888888766655554 333333322   222    33445555666666


Q ss_pred             hhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------------------
Q 011839          164 QNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL-------------------  224 (476)
Q Consensus       164 ~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L-------------------  224 (476)
                      .+....+....++-.++.|++......+.+..-..+..-+......+.+++..|+..=.+|                   
T Consensus       462 ~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~~~r  541 (716)
T KOG4593|consen  462 EITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRLRAQLERRLLQGDYEENITR  541 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc
Confidence            7777777777788888888887777666665444444444444444444444444443333                   


Q ss_pred             ---------------HHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011839          225 ---------------EADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE  288 (476)
Q Consensus       225 ---------------KaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLe  288 (476)
                                     +..+...|+.|+ .|++.+..+.........--...-+-+++ ..++.+|+.++.+...+.+.++
T Consensus       542 Vl~~~~npt~~~~~~~k~~~e~LqaE~~~lk~~l~~le~~~~~~~d~~i~~~s~~~~-~~ev~qlk~ev~s~ekr~~rlk  620 (716)
T KOG4593|consen  542 VLHMSTNPTSKARQIKKNRLEELQAELERLKERLTALEGDKMQFRDGEIAVHSLLAF-SKEVAQLKKEVESAEKRNQRLK  620 (716)
T ss_pred             eeeecCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHhhhhcc-hHHHHHHHHHHHHHHHHHHHHH
Confidence                           333333344444 44443333333222222111111112222 4678888888887777777777


Q ss_pred             hhhh
Q 011839          289 SKKL  292 (476)
Q Consensus       289 eei~  292 (476)
                      +-+.
T Consensus       621 ~vF~  624 (716)
T KOG4593|consen  621 EVFA  624 (716)
T ss_pred             HHHH
Confidence            6664

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=95.62  E-value=4.6  Score=44.50  Aligned_cols=134  Identities=13%  Similarity=0.205  Sum_probs=97.1

Q ss_pred             HHHHHhhhhhhhh---hhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHH
Q 011839           92 ETVKHLRNERESH---IQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLH  168 (476)
Q Consensus        92 eti~~l~~e~d~~---~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~  168 (476)
                      --|-.|+.+||-.   ||.---+-..|+.|++.-..++.. ..+++.-..+++.....|..+..+|...|..-++++.+.
T Consensus       271 ~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D-~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L  349 (622)
T COG5185         271 TDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSD-SNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKAL  349 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            3455677777654   555555666788888888888888 677777778888888888888888888888778887777


Q ss_pred             HHHhhhHHHHHHH-------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHH
Q 011839          169 IQREGGLEMNIAN-------L---QSEKEFWLQKEAALEQKISQLRDESAALNM----KRASLEERLKLLEA  226 (476)
Q Consensus       169 ~Qkea~LEeqIkq-------L---e~EIs~~~qEla~LepeiekL~~EeasLkQ----KLasLEeKL~~LKa  226 (476)
                      ..+...|..+|..       +   -.+..+...++..|.++..+|......-+.    ...+++..++++..
T Consensus       350 ~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~s  421 (622)
T COG5185         350 QSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDS  421 (622)
T ss_pred             HhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777776542       2   334447788999999999999887654332    45577777777743

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.55  E-value=0.11  Score=49.45  Aligned_cols=89  Identities=21%  Similarity=0.251  Sum_probs=41.5

Q ss_pred             HHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011839          146 LRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLE  225 (476)
Q Consensus       146 d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LK  225 (476)
                      .+.+.+..+...+..++.........-..+..++..|+..+..+..++.....-++.|.++...|.-.+..+|.+++.|+
T Consensus        92 el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~  171 (194)
T PF08614_consen   92 ELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE  171 (194)
T ss_dssp             ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444445555555555566666666666666666666666666666667777777776


Q ss_pred             HhhhhHhhh
Q 011839          226 ADKDSWTQM  234 (476)
Q Consensus       226 aERD~WLkk  234 (476)
                      .|.+.++..
T Consensus       172 ~En~~Lv~R  180 (194)
T PF08614_consen  172 EENRELVER  180 (194)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666665544

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=95.54  E-value=2.9  Score=42.78  Aligned_cols=8  Identities=25%  Similarity=0.613  Sum_probs=3.5

Q ss_pred             CCceeecc
Q 011839          411 SGEIVQIP  418 (476)
Q Consensus       411 ~~eiv~~~  418 (476)
                      .|.|+.|.
T Consensus       346 ~g~V~~i~  353 (423)
T TIGR01843       346 NGKVKSIS  353 (423)
T ss_pred             cEEEEEEC
Confidence            34444443

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.53  E-value=3.4  Score=42.30  Aligned_cols=70  Identities=17%  Similarity=0.183  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          137 IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDE  206 (476)
Q Consensus       137 IkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~E  206 (476)
                      |.+-+..+..+-+.+..++..|..|..+++....+...+.+++.+++.+|.....++..++..|....+.
T Consensus        33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~  102 (265)
T COG3883          33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQEL  102 (265)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666667777777777777777777777777777777777777777777777777777777666554443

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.49  E-value=7.7  Score=46.24  Aligned_cols=243  Identities=13%  Similarity=0.147  Sum_probs=135.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011839           73 LAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEA  152 (476)
Q Consensus        73 ~~e~~~~~~~q~e~~~~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A  152 (476)
                      -+|-+-+.|-++--  -|.+-|+.+.. .-+   ...--+-.|.-|+..|..+...++... -.+.+++.+...+.-...
T Consensus       649 wdek~~~~L~~~k~--rl~eel~ei~~-~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k-~~l~~~~~El~~~~~~i~  721 (1141)
T KOG0018|consen  649 WDEKEVDQLKEKKE--RLLEELKEIQK-RRK---EVSSVESKIHGLEMRLKYSKLDLEQLK-RSLEQNELELQRTESEID  721 (1141)
T ss_pred             cCHHHHHHHHHHHH--HHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            45666666665544  67777777776 333   344455667777777777777776655 444666666666666666


Q ss_pred             hHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHh
Q 011839          153 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE-FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL----EAD  227 (476)
Q Consensus       153 ~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs-~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L----KaE  227 (476)
                      .+.-+|-.++..++........|+++++.++..|= .+-+...----+|+...- ......++.+++..+..|    .=+
T Consensus       722 ~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~-~~~~a~k~~ef~~q~~~l~~~l~fe  800 (1141)
T KOG0018|consen  722 EFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEEREL-QQEFAKKRLEFENQKAKLENQLDFE  800 (1141)
T ss_pred             hhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhe
Confidence            66666667777777766677777777777776664 233333222334444333 444455555555555444    222


Q ss_pred             hhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhhhhhhcccchhhhH
Q 011839          228 KDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQ-LKENVSSLRSQLSSDESKKLQHATSEQKDFSTQ  305 (476)
Q Consensus       228 RD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~-LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~q  305 (476)
                      ++.=++..+ ..++.++.++.++.++..++..+...+.++ ++.+. -+......+..+.+....... .+++.-.|+.+
T Consensus       801 ~~~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~k~k~~~~~~~~e~~e~~k~~~~-~~~~~tkl~~~  878 (1141)
T KOG0018|consen  801 KQKDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEKKNKSKFEKKEDEINEVKKILRR-LVKELTKLDKE  878 (1141)
T ss_pred             ecccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhh
Confidence            333344555 666666667777777766666666666665 33322 011122222233222222221 23355566666


Q ss_pred             HHHHHhHHHHHHHHHHHHHH
Q 011839          306 IEAAGALIDKLITENIELVE  325 (476)
Q Consensus       306 ie~a~~~v~kl~~en~~l~e  325 (476)
                      |.+..+.++++..|=..|-.
T Consensus       879 i~~~es~ie~~~~er~~lL~  898 (1141)
T KOG0018|consen  879 ITSIESKIERKESERHNLLS  898 (1141)
T ss_pred             hhhhhhHHHHHHHHHHHHHH
Confidence            77777777777765544443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.48  E-value=0.8  Score=52.32  Aligned_cols=52  Identities=19%  Similarity=0.351  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011839          111 LEGTVQQLQNE-CDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRN  163 (476)
Q Consensus       111 ~Ek~IkqLqeE-i~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks  163 (476)
                      |=+.++.|.++ +..+. .....++.+++.|+.+.+..+++...++.+++.|++
T Consensus       541 L~~a~~vlreeYi~~~~-~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~  593 (717)
T PF10168_consen  541 LSQATKVLREEYIEKQD-LAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRE  593 (717)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445444 33322 224445555555555555555555555555555543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=95.46  E-value=1.3  Score=46.04  Aligned_cols=75  Identities=24%  Similarity=0.289  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHHHHHHHHHHHHhhhhhhh
Q 011839          257 VELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSV  332 (476)
Q Consensus       257 e~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl~~en~~l~ekvneL~~  332 (476)
                      ..|..++....+++-...+.|..|..++-.+...... .+.++++|..++.++..-=..|..|..+|.+|--+...
T Consensus       216 a~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~-~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~  290 (306)
T PF04849_consen  216 ASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQ-LAAENEELQQHLQASKESQRQLQAELQELQDKYAECMA  290 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333444444444444444444444321 13578888888888888888889988888887666543

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.45  E-value=6.2  Score=46.73  Aligned_cols=85  Identities=16%  Similarity=0.236  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHH-----HHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011839           77 ERQHLLQREAM-----AILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKE  151 (476)
Q Consensus        77 ~~~~~~q~e~~-----~~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~  151 (476)
                      ....+++.+.+     -+.+|+|..|+.+.+..--....+++.++.+..++.....++..+..++ .++..+...+.+..
T Consensus       616 k~~~f~~~~~~l~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er-~~~~~~~~~~~~r~  694 (1072)
T KOG0979|consen  616 KSRNFFSVSPVLEELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRER-TKLNSELKSYQQRK  694 (1072)
T ss_pred             hhhhhhccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHH
Confidence            34455555551     2445667777777777766777788888888888888888888888888 88888888888888


Q ss_pred             HhHHHHHHHHH
Q 011839          152 ATLEETIKQLR  162 (476)
Q Consensus       152 A~LE~tIKdLk  162 (476)
                      +.+|-.+.+|-
T Consensus       695 ~~ie~~~~~l~  705 (1072)
T KOG0979|consen  695 ERIENLVVDLD  705 (1072)
T ss_pred             HHHHHHHHHHH
Confidence            88777654443

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=95.44  E-value=2.8  Score=41.88  Aligned_cols=89  Identities=19%  Similarity=0.272  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          133 LEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNM  212 (476)
Q Consensus       133 lqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQ  212 (476)
                      |.++.+.++.+...+-++...++..+..|+.........+..|+.++..++..|.....+...-..+-..|+.+...-..
T Consensus        38 Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~  117 (246)
T PF00769_consen   38 LEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARE  117 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555777777778888888888888888888888888888888888888888877666666666666666666555555


Q ss_pred             HHHhHHHHH
Q 011839          213 KRASLEERL  221 (476)
Q Consensus       213 KLasLEeKL  221 (476)
                      .+.....++
T Consensus       118 ~~~~ak~~L  126 (246)
T PF00769_consen  118 DEEEAKEEL  126 (246)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444444

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=95.43  E-value=8.5  Score=46.34  Aligned_cols=119  Identities=14%  Similarity=0.098  Sum_probs=66.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhh--------------hhh-c
Q 011839          173 GGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQ--------------MES-V  237 (476)
Q Consensus       173 a~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLk--------------kEI-s  237 (476)
                      ..++.+..-++..+....+++.......+-++.+.+.++.+...++..++.|+..-+..=.              ++. .
T Consensus       176 ~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~  255 (1109)
T PRK10929        176 TALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGD  255 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcc
Confidence            3345555555556666666665555555555555555666666666665555222211100              111 1


Q ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011839          238 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK  291 (476)
Q Consensus       238 Lke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei  291 (476)
                      +...|..+-..+..|...+..+-...+.+..+....+..+..+.....++++.+
T Consensus       256 ~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi  309 (1109)
T PRK10929        256 LPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQS  309 (1109)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222344445556677777777777777777777666666666666666666555

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=95.43  E-value=0.004  Score=71.56  Aligned_cols=104  Identities=24%  Similarity=0.281  Sum_probs=0.0

Q ss_pred             HHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 011839          148 MQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAA-LEQKISQLRDESAALNMKRASLEERLKLLEA  226 (476)
Q Consensus       148 lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~-LepeiekL~~EeasLkQKLasLEeKL~~LKa  226 (476)
                      ...+..++..+..|+...+-....+..++.++..+..++..|..+... ....++.|.+....+..++..++..+..+.+
T Consensus       263 ~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~  342 (859)
T PF01576_consen  263 EKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANA  342 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            335666666677777777777777777888888888888888887754 3333666666666666677766666666655


Q ss_pred             hhhhH------hhhhh-chHHHHhhhHHHHHH
Q 011839          227 DKDSW------TQMES-VSKETIAGLSVDITQ  251 (476)
Q Consensus       227 ERD~W------LkkEI-sLke~IssL~~~i~s  251 (476)
                      ..+.|      |..|+ ++...+...+..+..
T Consensus       343 ~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~  374 (859)
T PF01576_consen  343 KVSSLEKTKKRLQGELEDLTSELEKAQAAAAE  374 (859)
T ss_dssp             --------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55554      44444 444444443333333

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=95.43  E-value=6.6  Score=47.36  Aligned_cols=71  Identities=18%  Similarity=0.170  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHH
Q 011839          117 QLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF  188 (476)
Q Consensus       117 qLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~  188 (476)
                      .+.+.+....+. ....++.|++...+....-+.+++++....--+....+..|.-.+|+..+..|+..+..
T Consensus      1567 ~V~eaL~~Ad~A-q~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~q 1637 (1758)
T KOG0994|consen 1567 DVVEALEEADVA-QGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQ 1637 (1758)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444444444 34456666666666666666677776666666666666666666666666655555553

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=95.42  E-value=1.9  Score=38.89  Aligned_cols=21  Identities=19%  Similarity=0.107  Sum_probs=9.1

Q ss_pred             chHHHHhhhHHHHHHHHHHHH
Q 011839          237 VSKETIAGLSVDITQLRMQVV  257 (476)
Q Consensus       237 sLke~IssL~~~i~sLq~QVe  257 (476)
                      .++..+..|+.++.-|-.++.
T Consensus       109 ~~~~r~~dL~~QN~lLh~QlE  129 (132)
T PF07926_consen  109 ELEQRIEDLNEQNKLLHDQLE  129 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            444444444444444444443

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG1103 consensus Predicted coiled-coil protein [Function unknown]

Probab=95.40  E-value=4.2  Score=43.42  Aligned_cols=177  Identities=19%  Similarity=0.201  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHhhhhHHHHHhhhHHHHHH----HH
Q 011839          114 TVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQ-------KEATLEETIKQLRNQNDLHIQREGGLEMNIA----NL  182 (476)
Q Consensus       114 ~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQ-------k~A~LE~tIKdLks~~es~~Qkea~LEeqIk----qL  182 (476)
                      .|++.++--..+.--++..--.-|+.|+.++..++|       -.+-+|-.-.+|+.+++-+...+-..+-.-+    +|
T Consensus        97 qcKnmQe~~~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qL  176 (561)
T KOG1103|consen   97 QCKNMQENAASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQL  176 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555555555567888888888888       4455666666777666666555444333322    23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----------HHHHhhhhHhhhhhchHHHHhhhHHHHHH
Q 011839          183 QSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK-----------LLEADKDSWTQMESVSKETIAGLSVDITQ  251 (476)
Q Consensus       183 e~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~-----------~LKaERD~WLkkEIsLke~IssL~~~i~s  251 (476)
                      +.+..-|.+=-.-|.-+-.+....-+.+.++-..+--++.           .+-+||.--|+.|.-.++.|+....+..-
T Consensus       177 eeEk~RHeqis~mLilEcKka~~KaaEegqKA~ei~Lklekdksr~~k~eee~aaERerglqteaqvek~i~EfdiEre~  256 (561)
T KOG1103|consen  177 EEEKKRHEQISLMLILECKKALLKAAEEGQKAEEIMLKLEKDKSRTKKGEEEAAAERERGLQTEAQVEKLIEEFDIEREF  256 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhccCccccCCChHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence            3333333333333444444444444444443332222211           22577777788888888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011839          252 LRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK  290 (476)
Q Consensus       252 Lq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeee  290 (476)
                      |+.++..++..-.-+.++..+|++.+..+...++-+.-.
T Consensus       257 LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~pN  295 (561)
T KOG1103|consen  257 LRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRPN  295 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcc
Confidence            999999999999999999999999999888777766543

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=95.36  E-value=2.9  Score=40.60  Aligned_cols=74  Identities=20%  Similarity=0.203  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHH
Q 011839          113 GTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE  187 (476)
Q Consensus       113 k~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs  187 (476)
                      ..+..|..|+..+++- .....-.|...+....++-+-++.....|+.|+...-......-.++.+|+....++-
T Consensus        26 ~~l~~l~~ENk~Lk~l-q~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~   99 (194)
T PF15619_consen   26 RKLQELRKENKTLKQL-QKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELL   99 (194)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555443 3333334455555566666666666777777777666666666666666665555554

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=95.35  E-value=1.7  Score=45.11  Aligned_cols=15  Identities=33%  Similarity=0.660  Sum_probs=6.9

Q ss_pred             HhHHHHHHHHHhhhh
Q 011839          152 ATLEETIKQLRNQND  166 (476)
Q Consensus       152 A~LE~tIKdLks~~e  166 (476)
                      ..+..+++.|+.++.
T Consensus       163 e~Lq~Klk~LEeEN~  177 (306)
T PF04849_consen  163 EALQEKLKSLEEENE  177 (306)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344444444444433

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=95.34  E-value=6.2  Score=44.21  Aligned_cols=18  Identities=11%  Similarity=0.084  Sum_probs=8.2

Q ss_pred             ccchhhhHHHHHHhHHHH
Q 011839          298 EQKDFSTQIEAAGALIDK  315 (476)
Q Consensus       298 ~~e~~~~qie~a~~~v~k  315 (476)
                      ....+...++.|..+.+-
T Consensus       474 ~~~~~~~~~~~~~~~~~~  491 (650)
T TIGR03185       474 NAFELERAITIADKAKKT  491 (650)
T ss_pred             hhhhHHHHHHHHHHHHHH
Confidence            344444455555444333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=95.16  E-value=4.9  Score=41.97  Aligned_cols=94  Identities=20%  Similarity=0.215  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH-HHhHHHHH
Q 011839           87 MAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQA-------TLEETIQQLQRQNDLRMQK-EATLEETI  158 (476)
Q Consensus        87 ~~~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~-------llqEkIkQLq~E~~d~lQk-~A~LE~tI  158 (476)
                      |+.++..-+.|+-+.++.-.+-..|...++.|....-.+..+.|.       .|.-+|.+|..+...++.+ ...=|+-.
T Consensus        29 ~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~lt  108 (310)
T PF09755_consen   29 IESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLT  108 (310)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346666667777777777777777777777777665555544332       3455667777777777543 33334444


Q ss_pred             HHHHhhhhHHHHHhhhHHHHHH
Q 011839          159 KQLRNQNDLHIQREGGLEMNIA  180 (476)
Q Consensus       159 KdLks~~es~~Qkea~LEeqIk  180 (476)
                      +.|...+....+.+..|+.++.
T Consensus       109 n~L~rkl~qLr~EK~~lE~~Le  130 (310)
T PF09755_consen  109 NDLSRKLNQLRQEKVELENQLE  130 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555444

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=95.10  E-value=4.2  Score=43.01  Aligned_cols=120  Identities=23%  Similarity=0.171  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011839          138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL  217 (476)
Q Consensus       138 kQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasL  217 (476)
                      +||+..+..+.........-+.+.+.       ....||..+.+++.++......+..+.-++..-.++...|.+.+++.
T Consensus       102 ~qL~~qnqkL~nqL~~~~~vf~k~k~-------~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~  174 (401)
T PF06785_consen  102 EQLQSQNQKLKNQLFHVREVFMKTKG-------DIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA  174 (401)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHhcc-------hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            66666666666666555555544443       34457777777777777777777777777777778888888888888


Q ss_pred             HHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011839          218 EERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLL  267 (476)
Q Consensus       218 EeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~Le  267 (476)
                      -+-+..|-+|...=+..   =-..|...+.-|..|..+|..|--++.++.
T Consensus       175 layqq~L~~eyQatf~e---q~~ml~kRQ~yI~~LEsKVqDLm~EirnLL  221 (401)
T PF06785_consen  175 LAYQQELNDEYQATFVE---QHSMLDKRQAYIGKLESKVQDLMYEIRNLL  221 (401)
T ss_pred             HHHHHHHHHHhhccccc---chhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777776666552222   223444455556666666666555555443

>smart00787 Spc7 Spc7 kinetochore protein

Probab=95.00  E-value=5.3  Score=41.51  Aligned_cols=90  Identities=26%  Similarity=0.284  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHhhhh---Hhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          203 LRDESAALNMKRASLEERLKLLEADKDS---WTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS  278 (476)
Q Consensus       203 L~~EeasLkQKLasLEeKL~~LKaERD~---WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIs  278 (476)
                      +......+..+.+.|..++.+|++..+.   .=..|. .+++.|..+..++...+.++..++.++..+...|+....+..
T Consensus       170 l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~  249 (312)
T smart00787      170 LNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKS  249 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344444444444444322222   122455 677777777777777888888888888888888888877777


Q ss_pred             HHHHhhhhhhhhhh
Q 011839          279 SLRSQLSSDESKKL  292 (476)
Q Consensus       279 eLqs~lqeLeeei~  292 (476)
                      .+..+|++.+...-
T Consensus       250 e~~~~I~~ae~~~~  263 (312)
T smart00787      250 ELNTEIAEAEKKLE  263 (312)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777777776543

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=94.83  E-value=8.1  Score=42.85  Aligned_cols=143  Identities=17%  Similarity=0.265  Sum_probs=77.2

Q ss_pred             HHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHh
Q 011839          147 RMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDE----------SAALNMKRAS  216 (476)
Q Consensus       147 ~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~E----------easLkQKLas  216 (476)
                      +......+...|..|-+..+.-...+...+..+..+..-+......-..+..++..+...          ...+..++..
T Consensus       276 ~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~  355 (560)
T PF06160_consen  276 VEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKE  355 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            334555566666666666666666666555555555555544444444444444443322          1222233333


Q ss_pred             HHHHHHHHHHhhhhHhhhhh---chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 011839          217 LEERLKLLEADKDSWTQMES---VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL  292 (476)
Q Consensus       217 LEeKL~~LKaERD~WLkkEI---sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~  292 (476)
                      ++.....+.   +.+-...+   .+...+..+...+..+..+...+...+.+|...-...++.+..++..+..++..+.
T Consensus       356 l~~~~~~~~---~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le  431 (560)
T PF06160_consen  356 LEKRYEDLE---ERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE  431 (560)
T ss_pred             HHHHHHHHH---HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333332   11112333   45556666666666666666777777777777777777777777777766666653

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=94.79  E-value=7.4  Score=44.08  Aligned_cols=25  Identities=16%  Similarity=0.135  Sum_probs=13.0

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHh
Q 011839          108 EATLEGTVQQLQNECDLYKEKVQAT  132 (476)
Q Consensus       108 e~~~Ek~IkqLqeEi~~lkqkLE~l  132 (476)
                      -..++..+.+|+.++.....+++..
T Consensus       196 ~~~L~~ql~~l~~~l~~aE~~l~~f  220 (754)
T TIGR01005       196 ADFLAPEIADLSKQSRDAEAEVAAY  220 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555554443

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=94.73  E-value=2.5  Score=41.77  Aligned_cols=66  Identities=17%  Similarity=0.250  Sum_probs=38.4

Q ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHhhhhhhhhhhhhhhcccchhh
Q 011839          238 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS------------SLRSQLSSDESKKLQHATSEQKDFS  303 (476)
Q Consensus       238 Lke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIs------------eLqs~lqeLeeei~~~~~~~~e~~~  303 (476)
                      +++.+..++..+.+|..++..++.....+..-.......+.            +...++..|+.....+.++..|.++
T Consensus        75 l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~~dv~~~ek~r  152 (251)
T PF11932_consen   75 LERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEERQERLARLRAMLDDADVSLAEKFR  152 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhhccCCCHHHHHH
Confidence            44455666666666666666666665555554333333333            3456677777776666666666666

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.64  E-value=0.63  Score=48.02  Aligned_cols=54  Identities=19%  Similarity=0.371  Sum_probs=27.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011839          109 ATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRN  163 (476)
Q Consensus       109 ~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks  163 (476)
                      ......+.+++.++..+++. +..+...++.|+.++..+.+....++...+.|..
T Consensus        39 ~~~~~~~~~~~~el~~le~E-e~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~   92 (314)
T PF04111_consen   39 SDSEEDIEELEEELEKLEQE-EEELLQELEELEKEREELDQELEELEEELEELDE   92 (314)
T ss_dssp             ---HH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445556666666666666 3333333366666666666666665555555544

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=94.59  E-value=15  Score=44.66  Aligned_cols=112  Identities=14%  Similarity=0.150  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHHHHHH---HhHH------HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHH
Q 011839          113 GTVQQLQNECDLYKEKVQ---ATLE------ETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQ  183 (476)
Q Consensus       113 k~IkqLqeEi~~lkqkLE---~llq------EkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe  183 (476)
                      ++|++|-.+|.+...+|.   +.|.      .+-.+|+.+-....+.-..++.+.......++...+.....+..|+..-
T Consensus      1511 eqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~ 1590 (1758)
T KOG0994|consen 1511 EQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGAD 1590 (1758)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            567888888877766642   2222      3345566666666666666666677777777777777777777787777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011839          184 SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL  224 (476)
Q Consensus       184 ~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L  224 (476)
                      ..|....+-+..+..+..........-.+++..|+..+..|
T Consensus      1591 ~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~l 1631 (1758)
T KOG0994|consen 1591 RDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEEL 1631 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777766

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=94.57  E-value=7.1  Score=40.95  Aligned_cols=159  Identities=16%  Similarity=0.167  Sum_probs=103.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHH
Q 011839          110 TLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW  189 (476)
Q Consensus       110 ~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~  189 (476)
                      -+-..+.+.++.+..+...++.+.+ ++..++-|..-+.++.+.....-..+......  ..+..|-.+|..++..+..|
T Consensus        69 ~La~lL~~sre~Nk~L~~Ev~~Lrq-kl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~--~ere~lV~qLEk~~~q~~qL  145 (319)
T PF09789_consen   69 NLAQLLSESREQNKKLKEEVEELRQ-KLNEAQGDIKLLREKLARQRVGDEGIGARHFP--HEREDLVEQLEKLREQIEQL  145 (319)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhchHHHHHHHHHhhhhhhccccccccc--hHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444333222 22445555555554444444444333333222  66777888888888888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          190 LQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQE  269 (476)
Q Consensus       190 ~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeE  269 (476)
                      ...+-.+..+.+.+..+.+.++.|-..|-.+++.+-.+...    =|  = .|-.+=.++.-|...+..++.+++.+...
T Consensus       146 e~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~----ri--v-DIDaLi~ENRyL~erl~q~qeE~~l~k~~  218 (319)
T PF09789_consen  146 ERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDEN----RI--V-DIDALIMENRYLKERLKQLQEEKELLKQT  218 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----Cc--c-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998888888888766444333    11  1 45666667788888888888888888888


Q ss_pred             HHHHHHHHH
Q 011839          270 NRQLKENVS  278 (476)
Q Consensus       270 Iq~LkeqIs  278 (476)
                      +..-+.-++
T Consensus       219 i~KYK~~le  227 (319)
T PF09789_consen  219 INKYKSALE  227 (319)
T ss_pred             HHHHHHHHH
Confidence            888888777

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=94.49  E-value=1.5  Score=47.72  Aligned_cols=119  Identities=20%  Similarity=0.216  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHhHHH-HHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011839          138 QQLQRQNDLRMQKEATLEE-TIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRAS  216 (476)
Q Consensus       138 kQLq~E~~d~lQk~A~LE~-tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLas  216 (476)
                      .||+..+..+.+...+++- .+.+.+...+...++...++.....++.+......++..+..++.++.++...++     
T Consensus       328 sqleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~-----  402 (493)
T KOG0804|consen  328 SQLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER-----  402 (493)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            4566666666666555555 4444444444444444444444444444444444444444444443333332221     


Q ss_pred             HHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          217 LEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL  280 (476)
Q Consensus       217 LEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseL  280 (476)
                                        |+ -+.-+..+..-...|....+.++..+.+.++.|+.|++|+.++
T Consensus       403 ------------------E~-n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl  447 (493)
T KOG0804|consen  403 ------------------EE-NKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL  447 (493)
T ss_pred             ------------------HH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence                              11 1112233333444556666677777777888888888887766

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=94.35  E-value=0.37  Score=40.95  Aligned_cols=53  Identities=23%  Similarity=0.270  Sum_probs=44.5

Q ss_pred             hh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011839          235 ES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD  287 (476)
Q Consensus       235 EI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeL  287 (476)
                      .| -|+..|..++..+..|..++..+.+.+..|..++++|+..-..|+.++..|
T Consensus        19 tI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L   72 (79)
T PRK15422         19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL   72 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45 566677777888888888888888899999999999999999998888765

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=94.34  E-value=6.7  Score=41.98  Aligned_cols=48  Identities=13%  Similarity=0.250  Sum_probs=23.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhhhhh
Q 011839          244 GLSVDITQLRMQVVELEESRNNLLQENRQLKENVS---SLRSQLSSDESKK  291 (476)
Q Consensus       244 sL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIs---eLqs~lqeLeeei  291 (476)
                      .+...+..++.++..++..+..+..++..++..+.   ..+.++..|..+.
T Consensus       314 ~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~  364 (498)
T TIGR03007       314 QLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDY  364 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence            34444444444555555555555555554444444   3344445555444

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=94.34  E-value=4.6  Score=37.86  Aligned_cols=112  Identities=18%  Similarity=0.160  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 011839          113 GTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQK  192 (476)
Q Consensus       113 k~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qE  192 (476)
                      -.+..++..+.....-=+.+-.--+.||+-++..+..++.+-...+..|+.......+.-...-+++.-+..+......+
T Consensus        20 ~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~   99 (177)
T PF13870_consen   20 HQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQE   99 (177)
T ss_pred             HHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444333322344445568888888888888888888888888888888887777777777777777766666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011839          193 EAALEQKISQLRDESAALNMKRASLEERLKLL  224 (476)
Q Consensus       193 la~LepeiekL~~EeasLkQKLasLEeKL~~L  224 (476)
                      +....+.+.++.++-...+.....+......|
T Consensus       100 l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l  131 (177)
T PF13870_consen  100 LKDREEELAKLREELYRVKKERDKLRKQNKKL  131 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666665555555555544444443

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=94.33  E-value=0.4  Score=54.13  Aligned_cols=73  Identities=23%  Similarity=0.325  Sum_probs=23.3

Q ss_pred             HHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011839          151 EATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF-------WLQKEAALEQKISQLRDESAALNMKRASLEERLKL  223 (476)
Q Consensus       151 ~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~-------~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~  223 (476)
                      .+.++..|+.|...+....+....+...+..+......       ...++..|..++..|..+...|.+.+..|+.++..
T Consensus       456 ~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~  535 (722)
T PF05557_consen  456 KAELEAQLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEK  535 (722)
T ss_dssp             --------------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566667666665555555566666655444432       23455666667777777777777777777777765

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=94.22  E-value=15  Score=43.24  Aligned_cols=118  Identities=14%  Similarity=0.205  Sum_probs=57.3

Q ss_pred             HHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 011839          151 EATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS  230 (476)
Q Consensus       151 ~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~  230 (476)
                      .-++.+++.+|+...-..+++-.+...++..-+..|.....+...+...++++..+...+..|..+....+..|+.|...
T Consensus       426 y~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~  505 (980)
T KOG0980|consen  426 YEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELAL  505 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444444445555555556666666666666555555555555555554443


Q ss_pred             Hhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          231 WTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQE  269 (476)
Q Consensus       231 WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeE  269 (476)
                       +..|+ .++..++...+.-.....++..+..+++.+..+
T Consensus       506 -l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~  544 (980)
T KOG0980|consen  506 -LLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAE  544 (980)
T ss_pred             -HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence             23333 555555444444444444444444444444333

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=94.20  E-value=13  Score=42.65  Aligned_cols=135  Identities=18%  Similarity=0.215  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011839          189 WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLL  267 (476)
Q Consensus       189 ~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~Le  267 (476)
                      +..++..|..++..+......+......++++.+.|+.-... +.+|+ .++-.+...+.....+......|+...+...
T Consensus       501 L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~-l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~  579 (698)
T KOG0978|consen  501 LREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESK-LIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSE  579 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555555555555555555555555555433322 12222 3444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhhhHHHH------HHhHHHHHHHHHHHHHH
Q 011839          268 QENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEA------AGALIDKLITENIELVE  325 (476)
Q Consensus       268 eEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~qie~------a~~~v~kl~~en~~l~e  325 (476)
                      ....+++.++.+....+..+.-.....+ .+.+.|+.-.+.      +.+-.+.|..|...+++
T Consensus       580 ~~le~i~~~~~e~~~ele~~~~k~~rle-EE~e~L~~kle~~k~~~~~~s~d~~L~EElk~yK~  642 (698)
T KOG0978|consen  580 AKLEQIQEQYAELELELEIEKFKRKRLE-EELERLKRKLERLKKEESGASADEVLAEELKEYKE  642 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccccccHHHHHHHHHHHh
Confidence            4444444444444333333333322111 111222211111      23345567777777765

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=94.19  E-value=2.8  Score=45.72  Aligned_cols=80  Identities=24%  Similarity=0.260  Sum_probs=60.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHHHHHHHHHH
Q 011839          244 GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIEL  323 (476)
Q Consensus       244 sL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl~~en~~l  323 (476)
                      ........++.+++.+.+++..+.+.++.|++....|...+.++++...               .|+.-.+..|+   +|
T Consensus       379 ~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~---------------~~~~s~d~~I~---dL  440 (493)
T KOG0804|consen  379 IVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREK---------------EALGSKDEKIT---DL  440 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---------------HHHHHHHHHHH---HH
Confidence            3444566777888888888888889999999999999888888877665               33344455556   88


Q ss_pred             HHhhhhhhhhhhhhhhhh
Q 011839          324 VEKVNDLSVKLDRQSVAA  341 (476)
Q Consensus       324 ~ekvneL~~~l~~~~~~~  341 (476)
                      .|-++.|-.-|+-++.-.
T Consensus       441 qEQlrDlmf~le~qqklk  458 (493)
T KOG0804|consen  441 QEQLRDLMFFLEAQQKLK  458 (493)
T ss_pred             HHHHHhHheehhhhhhhh
Confidence            899999988887666554

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=94.16  E-value=6.4  Score=38.84  Aligned_cols=86  Identities=20%  Similarity=0.268  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Q 011839          112 EGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQ  191 (476)
Q Consensus       112 Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~q  191 (476)
                      +..|..++.++....... .-+..++..+...+.....-+..+|.+|.++=..   ..+........|..+..+.+....
T Consensus         8 d~~~~~~~~e~~~~E~e~-~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e---~~~~~~~~~~~i~~~~~erdq~~~   83 (207)
T PF05010_consen    8 DAAIKKVQEEVAEKEEEE-QELKKKYEELHKENQEMRKIMEEYEKTIAQMIEE---KQKQKELSEAEIQKLLKERDQAYA   83 (207)
T ss_pred             HHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHhhHHhHHHHHHHHHhhHHHHHH
Confidence            344555555554444442 2234445666666666666777777777665443   222233334444444444444333


Q ss_pred             HHHHHHHHHH
Q 011839          192 KEAALEQKIS  201 (476)
Q Consensus       192 Ela~Lepeie  201 (476)
                      .+..++.-+.
T Consensus        84 dL~s~E~sfs   93 (207)
T PF05010_consen   84 DLNSLEKSFS   93 (207)
T ss_pred             HHHHHHhhHH
Confidence            3333333333

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=94.12  E-value=15  Score=42.81  Aligned_cols=138  Identities=17%  Similarity=0.225  Sum_probs=96.0

Q ss_pred             HHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHhhhhHH
Q 011839           93 TVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQR----QNDLRMQKEATLEETIKQLRNQNDLH  168 (476)
Q Consensus        93 ti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~----E~~d~lQk~A~LE~tIKdLks~~es~  168 (476)
                      -+-.||.+.|.-+|+...+|..+..|+..+.+--+.|...-+|.=+.+.+    --..|-+..+.||.+|.++..++...
T Consensus        25 e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~  104 (769)
T PF05911_consen   25 EAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLAES  104 (769)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34568999999999999999999999999999888764333332011111    01223335556777777776665443


Q ss_pred             HHHhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 011839          169 IQREGG-------LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS  230 (476)
Q Consensus       169 ~Qkea~-------LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~  230 (476)
                      .-.-..       ...-|..|.........++..+..+++....++++|+-.+--++..+..--.||+-
T Consensus       105 ~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~  173 (769)
T PF05911_consen  105 AAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREY  173 (769)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333322       22347777777778888888888999999999999999999888888877666665

The function of this family is unknown.

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=94.05  E-value=13  Score=41.95  Aligned_cols=99  Identities=18%  Similarity=0.153  Sum_probs=51.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh---------hhhHhhhhhchHHHHh
Q 011839          173 GGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEAD---------KDSWTQMESVSKETIA  243 (476)
Q Consensus       173 a~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaE---------RD~WLkkEIsLke~Is  243 (476)
                      .-|.+++..|+.....+..+-...-.++..++.+...+...+..-++...+|+.+         |..+++.=+.+-..|.
T Consensus       422 ~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~  501 (594)
T PF05667_consen  422 APLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIR  501 (594)
T ss_pred             hHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHH
Confidence            3345555555555544444444444445555555555555555555555555333         3334443335555556


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          244 GLSVDITQLRMQVVELEESRNNLLQENR  271 (476)
Q Consensus       244 sL~~~i~sLq~QVe~Leee~s~LeeEIq  271 (476)
                      -++.+|.....+...|+.+++.+.....
T Consensus       502 KQk~eI~KIl~DTr~lQkeiN~l~gkL~  529 (594)
T PF05667_consen  502 KQKEEIEKILSDTRELQKEINSLTGKLD  529 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666666555555444

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=94.02  E-value=5.9  Score=42.39  Aligned_cols=16  Identities=6%  Similarity=0.067  Sum_probs=8.9

Q ss_pred             hhhhhhhhhccccccc
Q 011839          333 KLDRQSVAAGLSSAIG  348 (476)
Q Consensus       333 ~l~~~~~~~~~ss~~~  348 (476)
                      .|+....-++.++-+.
T Consensus       313 ~l~~~~I~AP~dG~V~  328 (457)
T TIGR01000       313 DSQKGVIKAPEDGVLH  328 (457)
T ss_pred             HHhCCEEECCCCeEEE
Confidence            4444444677777554

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=94.02  E-value=8.6  Score=39.78  Aligned_cols=146  Identities=18%  Similarity=0.163  Sum_probs=73.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHH
Q 011839          174 GLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQL  252 (476)
Q Consensus       174 ~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sL  252 (476)
                      .-+=+|..|+....+-.++...-+.+|..|+-++..|......++.....|..        ++ .-+-.|..+...+.+.
T Consensus        36 QrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlsh--------dlq~Ke~qv~~lEgQl~s~  107 (307)
T PF10481_consen   36 QRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSH--------DLQVKESQVNFLEGQLNSC  107 (307)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhH--------HHhhhHHHHHHHHHHHHHH
Confidence            33444566666666666666666667777777776666666666555443333        22 3334555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh----------cccchhhhHHHHHHhHHHHHHHHHHH
Q 011839          253 RMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT----------SEQKDFSTQIEAAGALIDKLITENIE  322 (476)
Q Consensus       253 q~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~----------~~~e~~~~qie~a~~~v~kl~~en~~  322 (476)
                      ..++..|+.++.-+..+....+...       ..-..++..+.+          ...-...+..+-++.-..+=+.|.-.
T Consensus       108 Kkqie~Leqelkr~KsELErsQ~~~-------~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~ekynkeveerkr  180 (307)
T PF10481_consen  108 KKQIEKLEQELKRCKSELERSQQAA-------SSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQEKYNKEVEERKR  180 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-------ccCCccccccCCchhhccCCCChhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence            5555554444444444443332222       222222212211          12233334444455555555666666


Q ss_pred             HHHhhhhhhhhh
Q 011839          323 LVEKVNDLSVKL  334 (476)
Q Consensus       323 l~ekvneL~~~l  334 (476)
                      |...|--|.++.
T Consensus       181 le~e~k~lq~k~  192 (307)
T PF10481_consen  181 LEAEVKALQAKK  192 (307)
T ss_pred             HHHHHHHHhccc
Confidence            655555565543

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=93.91  E-value=18  Score=43.11  Aligned_cols=76  Identities=12%  Similarity=0.067  Sum_probs=31.8

Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHH
Q 011839          242 IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS------SLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDK  315 (476)
Q Consensus       242 IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIs------eLqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~k  315 (476)
                      +..+.+++..|+..-...+..+....+.|.+++..+.      .++...+++..+.....-+.+.+.+..|++-.....+
T Consensus       320 v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~~~e~~~~~~~ei~~~~~~~~~~~~~~~~~~id~~~~~~~~  399 (1072)
T KOG0979|consen  320 VEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETEDPENPVEEDQEIMKEVLQKKSSKLRDSRQEIDAEQLKSQK  399 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccccchhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Confidence            3333334444444444433333333333333333333      2233333444444444444555666555444444444


Q ss_pred             HH
Q 011839          316 LI  317 (476)
Q Consensus       316 l~  317 (476)
                      ++
T Consensus       400 ~~  401 (1072)
T KOG0979|consen  400 LR  401 (1072)
T ss_pred             HH
Confidence            43

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=93.84  E-value=11  Score=41.79  Aligned_cols=136  Identities=14%  Similarity=0.192  Sum_probs=78.6

Q ss_pred             HHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHh
Q 011839          150 KEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL--EAD  227 (476)
Q Consensus       150 k~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L--KaE  227 (476)
                      ..-++-..|+.|+..-.........++.-.+.++.-..+|.-.+..|..+++.-.++-.+|..+.++|-..++.-  --+
T Consensus       289 ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e  368 (622)
T COG5185         289 EAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTE  368 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHH
Confidence            333444444444444444444455555566666666666666666666666666666666666666665555432  011


Q ss_pred             hhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011839          228 KDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS  285 (476)
Q Consensus       228 RD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lq  285 (476)
                      -=+.+.+|- .|.+.+...+-....|...|...+-+..+.-.+..++..+.+++..+|.
T Consensus       369 ~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~  427 (622)
T COG5185         369 QFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNIT  427 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            111122333 5666777777777788888877776666666666666666665554443

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=93.74  E-value=1  Score=37.47  Aligned_cols=67  Identities=19%  Similarity=0.310  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          135 ETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKIS  201 (476)
Q Consensus       135 EkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~Lepeie  201 (476)
                      +.+.+|+.....++..++.++..+..|+.++....+....|.....+|+.+-..|...+..+-.++.
T Consensus         4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~   70 (72)
T PF06005_consen    4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE   70 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3457788888888888888999999999988888888888888888888888888888877776665

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=93.74  E-value=3.5  Score=38.62  Aligned_cols=44  Identities=27%  Similarity=0.398  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011839          179 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK  222 (476)
Q Consensus       179 IkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~  222 (476)
                      +.++..+++........+..++..+.+....+...+...++++.
T Consensus        90 l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~  133 (191)
T PF04156_consen   90 LQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLD  133 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=93.49  E-value=11  Score=39.13  Aligned_cols=41  Identities=24%  Similarity=0.321  Sum_probs=31.0

Q ss_pred             HHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Q 011839           89 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKV  129 (476)
Q Consensus        89 ~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkL  129 (476)
                      .+.--..+++.|..-.+..-.-||..|+.|+..+..++-.-
T Consensus        54 ~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~   94 (309)
T PF09728_consen   54 QLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEES   94 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334455677777778888899999999999998888653

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=93.47  E-value=19  Score=41.99  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 011839          189 WLQKEAALEQKISQLRDESAAL  210 (476)
Q Consensus       189 ~~qEla~LepeiekL~~EeasL  210 (476)
                      +...+..+.++++.+......+
T Consensus       327 ~~~~~~~~~~~~~~l~~~~~~l  348 (908)
T COG0419         327 LEERLEKLEEKLEKLESELEEL  348 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444333333

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.43  E-value=2.3  Score=42.45  Aligned_cols=66  Identities=17%  Similarity=0.241  Sum_probs=46.5

Q ss_pred             HHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011839          225 EADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK  290 (476)
Q Consensus       225 KaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeee  290 (476)
                      ..|++.++.+-...-+.|...+++|..|..-|+.++++++.....+..+.+.+.-|...+..+..+
T Consensus        38 ~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e  103 (230)
T PF10146_consen   38 RKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE  103 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444333333445577777788888888888888888888888888877777777777777776

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PLN02939 transferase, transferring glycosyl groups

Probab=93.40  E-value=22  Score=42.45  Aligned_cols=34  Identities=15%  Similarity=0.163  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHH
Q 011839          138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQR  171 (476)
Q Consensus       138 kQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qk  171 (476)
                      ...-.+.+.+-.++.-+|.++.+-........|.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (977)
T PLN02939        159 EKILTEKEALQGKINILEMRLSETDARIKLAAQE  192 (977)
T ss_pred             HHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhc
Confidence            4444444455555555555555544444333333

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=93.32  E-value=2.8  Score=38.05  Aligned_cols=48  Identities=21%  Similarity=0.314  Sum_probs=26.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011839          243 AGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK  290 (476)
Q Consensus       243 ssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeee  290 (476)
                      ......+..|+.++..|+.+...+.+=.=+--+.+.+|+.++..++.=
T Consensus        64 ~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~m  111 (120)
T PF12325_consen   64 RALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEM  111 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            334444555666666666666665555555555555555555555543

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF15294 Leu_zip: Leucine zipper

Probab=93.27  E-value=7.4  Score=40.13  Aligned_cols=60  Identities=25%  Similarity=0.406  Sum_probs=49.6

Q ss_pred             hhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011839           97 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND  166 (476)
Q Consensus        97 l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~e  166 (476)
                      |.-.++....  .++-+.|..|+.|+..++-.|        +.++.....++....+++..|++|+...+
T Consensus       118 L~pl~e~g~~--~ll~kEi~rLq~EN~kLk~rl--------~~le~~at~~l~Ek~kl~~~L~~lq~~~~  177 (278)
T PF15294_consen  118 LEPLNESGGS--ELLNKEIDRLQEENEKLKERL--------KSLEKQATSALDEKSKLEAQLKELQDEQG  177 (278)
T ss_pred             cccccccchH--HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666433  788899999999998877765        77899999999999999999999999433

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=93.22  E-value=5.7  Score=41.25  Aligned_cols=145  Identities=19%  Similarity=0.248  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          119 QNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQ  198 (476)
Q Consensus       119 qeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~Lep  198 (476)
                      .+++.+...+-.-.+..- -||++++..++-.+-.|..+|-+++.              .+.+++.++..+..++..++-
T Consensus        83 k~~l~evEekyrkAMv~n-aQLDNek~~l~yqvd~Lkd~lee~eE--------------~~~~~~re~~eK~~elEr~K~  147 (302)
T PF09738_consen   83 KDSLAEVEEKYRKAMVSN-AQLDNEKSALMYQVDLLKDKLEELEE--------------TLAQLQREYREKIRELERQKR  147 (302)
T ss_pred             HHHHHHHHHHHHHHHHHH-hhhchHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444 77888888888777777766666554              588888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhh-----hh--------------chHHHHhhhHHH-HHHHHHHHHH
Q 011839          199 KISQLRDESAALNMKRASLEERLKLLEADKDSWTQM-----ES--------------VSKETIAGLSVD-ITQLRMQVVE  258 (476)
Q Consensus       199 eiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkk-----EI--------------sLke~IssL~~~-i~sLq~QVe~  258 (476)
                      .+..|..+...|+..+.....-|.    ++.--|-.     +.              ...+....|... -..|.-.+..
T Consensus       148 ~~d~L~~e~~~Lre~L~~rdeli~----khGlVlv~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkK  223 (302)
T PF09738_consen  148 AHDSLREELDELREQLKQRDELIE----KHGLVLVPDATNGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKK  223 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HCCeeeCCCCCCCccccCccccCCCcccccchhhhhhhcccCCCCHHHHHHH
Confidence            888888888888777755533332    11111111     00              123333333333 3345556677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          259 LEESRNNLLQENRQLKENVSSLRS  282 (476)
Q Consensus       259 Leee~s~LeeEIq~LkeqIseLqs  282 (476)
                      |-.+...|..+|+.|+.++...+.
T Consensus       224 l~~eke~L~~qv~klk~qLee~~~  247 (302)
T PF09738_consen  224 LADEKEELLEQVRKLKLQLEERQS  247 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            777777777777777777765533

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=93.20  E-value=15  Score=42.49  Aligned_cols=77  Identities=18%  Similarity=0.316  Sum_probs=43.8

Q ss_pred             HHHHHHHHhhhhhhhhhhhHhh---HHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHH---HHhHHHHHH
Q 011839           89 ILEETVKHLRNERESHIQKEAT---LEGTVQQLQNECDLYK---EKVQATLEETIQQLQRQNDLRMQK---EATLEETIK  159 (476)
Q Consensus        89 ~~eeti~~l~~e~d~~~~~e~~---~Ek~IkqLqeEi~~lk---qkLE~llqEkIkQLq~E~~d~lQk---~A~LE~tIK  159 (476)
                      +|.|+|.+|++|.|..+-.-..   |.....-|+.++...+   |-+--.+.++|..|..+.+.-+..   ...+..++.
T Consensus       459 ~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle  538 (762)
T PLN03229        459 ALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLD  538 (762)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHH
Confidence            7889999999999986543332   3444444444444421   111112556677787777776663   334445555


Q ss_pred             HHHhhh
Q 011839          160 QLRNQN  165 (476)
Q Consensus       160 dLks~~  165 (476)
                      -|+...
T Consensus       539 ~Lk~~~  544 (762)
T PLN03229        539 MLNEFS  544 (762)
T ss_pred             HHHHHH
Confidence            555443

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=93.19  E-value=17  Score=40.47  Aligned_cols=249  Identities=15%  Similarity=0.199  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHH-----
Q 011839           85 EAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQA----------TLEETIQQLQRQNDLRMQ-----  149 (476)
Q Consensus        85 e~~~~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~----------llqEkIkQLq~E~~d~lQ-----  149 (476)
                      +.++-.++.|+.+.++.+-.+..|.--...|.+|.+....+++.+-.          .+.+.+.+++.++..+..     
T Consensus       108 ~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~G  187 (560)
T PF06160_consen  108 EQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENG  187 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            34556677777777777777777777777777777777776666532          344455555555554444     


Q ss_pred             -------HHHhHHHHHHHHHhhhhHHHH----HhhhHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH
Q 011839          150 -------KEATLEETIKQLRNQNDLHIQ----REGGLEMNIANLQSEKEFW------------LQKEAALEQKISQLRDE  206 (476)
Q Consensus       150 -------k~A~LE~tIKdLks~~es~~Q----kea~LEeqIkqLe~EIs~~------------~qEla~LepeiekL~~E  206 (476)
                             -...++..+..|+...+.--.    -+..+-.+|..|+..+...            ..++..+..++......
T Consensus       188 D~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~  267 (560)
T PF06160_consen  188 DYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALAL  267 (560)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence                   223333333333333332211    1223444455555555422            12222222222222222


Q ss_pred             HHH-----HHHHHHhHHHHHHHH-------HHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 011839          207 SAA-----LNMKRASLEERLKLL-------EADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRN---NLLQEN  270 (476)
Q Consensus       207 eas-----LkQKLasLEeKL~~L-------KaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s---~LeeEI  270 (476)
                      -..     ....+..+..+|..|       ...|+. +.+.. .+...|......+..|..++..+..+..   ......
T Consensus       268 L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~-V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~  346 (560)
T PF06160_consen  268 LKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKY-VEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIV  346 (560)
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence            211     122333444455544       222332 33344 7777888888888888888888887653   244556


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhc-------------ccchhhhHHHHHHhHHHHHHHHHHHHHHhhhhhhhhh
Q 011839          271 RQLKENVSSLRSQLSSDESKKLQHATS-------------EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL  334 (476)
Q Consensus       271 q~LkeqIseLqs~lqeLeeei~~~~~~-------------~~e~~~~qie~a~~~v~kl~~en~~l~ekvneL~~~l  334 (476)
                      ..+..++..+..++..+...+....+.             ..+.+..+......-|..|-.+...-.+++..+..+|
T Consensus       347 ~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l  423 (560)
T PF06160_consen  347 RELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKL  423 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777778888887777777777554332             2333333444444455556666666666666665544

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=93.15  E-value=0.85  Score=37.94  Aligned_cols=53  Identities=17%  Similarity=0.382  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhH
Q 011839          179 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW  231 (476)
Q Consensus       179 IkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~W  231 (476)
                      +.+|+..|....-..+.|.-+++.|+.++..+...-..|..+-.+|+.+|..|
T Consensus         6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~   58 (72)
T PF06005_consen    6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAW   58 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555555566666555555555555555555555554

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=93.03  E-value=5  Score=36.62  Aligned_cols=50  Identities=22%  Similarity=0.300  Sum_probs=20.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011839          172 EGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL  221 (476)
Q Consensus       172 ea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL  221 (476)
                      ...+.+++..+..++.........++.++..+..+.+.+..++..++.++
T Consensus        54 ~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~  103 (151)
T PF11559_consen   54 REDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQL  103 (151)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444433333333333333333333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.96  E-value=0.96  Score=37.98  Aligned_cols=51  Identities=25%  Similarity=0.294  Sum_probs=40.9

Q ss_pred             chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011839          237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD  287 (476)
Q Consensus       237 sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeL  287 (476)
                      -|+..|..++..+.+|+.++..+...+..|..++++|+..-..|+.++..|
T Consensus        22 LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL   72 (79)
T COG3074          22 LLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL   72 (79)
T ss_pred             HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556666777788888888888888889999999998888888888765

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=92.89  E-value=20  Score=40.64  Aligned_cols=54  Identities=20%  Similarity=0.199  Sum_probs=29.6

Q ss_pred             HHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 011839          281 RSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQS  338 (476)
Q Consensus       281 qs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl~~en~~l~ekvneL~~~l~~~~  338 (476)
                      .+.++.|-..+-...+|    +...++.-|+-|..|-.++-......++|--+|+-++
T Consensus       291 d~~i~~L~~di~~~~~S----~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~s  344 (629)
T KOG0963|consen  291 DSEIAQLSNDIERLEAS----LVEEREKHKAQISALEKELKAKISELEELKEKLNSRS  344 (629)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            34444444444433333    3344455566666666666666666777777775543

>PRK11281 hypothetical protein; Provisional

Probab=92.80  E-value=28  Score=42.12  Aligned_cols=47  Identities=19%  Similarity=0.111  Sum_probs=28.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011839          245 LSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK  291 (476)
Q Consensus       245 L~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei  291 (476)
                      +-..+..|...+..+-...+.+..++...+..++.+.....++++.+
T Consensus       283 ~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi  329 (1113)
T PRK11281        283 ELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQI  329 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566666666666666666666666666666666666555555

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=92.77  E-value=24  Score=41.15  Aligned_cols=151  Identities=15%  Similarity=0.172  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Q 011839          112 EGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQ  191 (476)
Q Consensus       112 Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~q  191 (476)
                      |..+.-|..+++...++ .+.+++++-+|+.-+..+++..-..       +++.+...+.-  +-..-.+.+........
T Consensus        23 e~e~~~lk~~l~~~~~~-~~~~e~r~~hld~aLkec~~qlr~~-------ree~eq~i~~~--~~~~s~e~e~~~~~le~   92 (769)
T PF05911_consen   23 EAEAASLKQQLEAATQQ-KLALEDRVSHLDGALKECMRQLRQV-------REEQEQKIHEA--VAKKSKEWEKIKSELEA   92 (769)
T ss_pred             HHHHHHHHHHHHHHHHH-hHHHHHHhhhhhHHHHHHHHHHHHh-------hHHHHHHHHHH--HHHHhHHHHHHHHHHHH
Confidence            45566777788888888 7888888888888888888754332       22111111110  11112334444445566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          192 KEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQEN  270 (476)
Q Consensus       192 Ela~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEI  270 (476)
                      ++..+..++..+..++..+...|...+.-|..|...|.. .-.++ .|...+.+...++.+|+.++-.+.+++.-...|-
T Consensus        93 ~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~-~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~  171 (769)
T PF05911_consen   93 KLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQ-AEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEER  171 (769)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677777788888888888888887777777777555544 33566 8888888888888888888888888776655554


Q ss_pred             HHH
Q 011839          271 RQL  273 (476)
Q Consensus       271 q~L  273 (476)
                      .--
T Consensus       172 ~~~  174 (769)
T PF05911_consen  172 EYS  174 (769)
T ss_pred             HHh
Confidence            433

The function of this family is unknown.

>PRK10698 phage shock protein PspA; Provisional

Probab=92.69  E-value=11  Score=37.15  Aligned_cols=52  Identities=15%  Similarity=0.156  Sum_probs=23.3

Q ss_pred             HHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          151 EATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQ  202 (476)
Q Consensus       151 ~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~Lepeiek  202 (476)
                      ....+..+..|+.........-..|...+..|+..+..+..+...|..++..
T Consensus        94 K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~  145 (222)
T PRK10698         94 KQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQA  145 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444444444444444444433

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=92.64  E-value=10  Score=36.52  Aligned_cols=119  Identities=16%  Similarity=0.223  Sum_probs=72.6

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHH
Q 011839          107 KEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEK  186 (476)
Q Consensus       107 ~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EI  186 (476)
                      .+.+++..|+++++.+...+..+-...... +.++.+++.+.......+.....       ..+.-.  ++--...=..+
T Consensus        24 P~~~l~q~ird~e~~l~~a~~~~a~~~a~~-~~le~~~~~~~~~~~~~~~~A~~-------Al~~g~--edLAr~al~~k   93 (221)
T PF04012_consen   24 PEKMLEQAIRDMEEQLRKARQALARVMANQ-KRLERKLDEAEEEAEKWEKQAEL-------ALAAGR--EDLAREALQRK   93 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-------HHHcCC--HHHHHHHHHHH
Confidence            348999999999999999999986666555 66666666666655555555433       322211  11112223333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhh
Q 011839          187 EFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME  235 (476)
Q Consensus       187 s~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkE  235 (476)
                      .........+...|..+......|+..+..++.++..++..++.+.-..
T Consensus        94 ~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~  142 (221)
T PF04012_consen   94 ADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARE  142 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455556666666666666666666666666666666666654444

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=92.59  E-value=21  Score=40.14  Aligned_cols=101  Identities=14%  Similarity=0.234  Sum_probs=48.3

Q ss_pred             hhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHH-----
Q 011839          103 SHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEM-----  177 (476)
Q Consensus       103 ~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEe-----  177 (476)
                      +.=+++..+++..+.|+.-+..++--+..        +......+.++++.+...|..-+.+++...++...|..     
T Consensus       256 k~~~~~eslre~~~~L~~D~nK~~~y~~~--------~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q  327 (581)
T KOG0995|consen  256 KDPGKEESLREKKARLQDDVNKFQAYVSQ--------MKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ  327 (581)
T ss_pred             cCcchHHHHHHHHHHHHhHHHHHHHHHHH--------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34566777777777776666666555433        33333333333333333333333333333333333322     


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          178 -----NIANLQSEKEFWLQKEAALEQKISQLRDESAALN  211 (476)
Q Consensus       178 -----qIkqLe~EIs~~~qEla~LepeiekL~~EeasLk  211 (476)
                           .+.+...+..+..+++..|.+++..|..+.-.++
T Consensus       328 ~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~  366 (581)
T KOG0995|consen  328 GISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELK  366 (581)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence                 2233334444556666666666666655544333

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=92.56  E-value=19  Score=39.52  Aligned_cols=11  Identities=36%  Similarity=0.718  Sum_probs=8.7

Q ss_pred             chhHHHHHHhh
Q 011839          453 PFRLVSFVAKY  463 (476)
Q Consensus       453 pfrlisfva~y  463 (476)
                      +|||-.|.=||
T Consensus       484 ~ir~g~fLrr~  494 (511)
T PF09787_consen  484 SIRLGIFLRRY  494 (511)
T ss_pred             hHHHHHHHhcC
Confidence            67888888777

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=92.43  E-value=12  Score=36.96  Aligned_cols=44  Identities=16%  Similarity=0.262  Sum_probs=19.8

Q ss_pred             HHHHHHHHHhhhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 011839           88 AILEETVKHLRNERESH-IQKEATLEGTVQQLQNECDLYKEKVQA  131 (476)
Q Consensus        88 ~~~eeti~~l~~e~d~~-~~~e~~~Ek~IkqLqeEi~~lkqkLE~  131 (476)
                      +.+.+++..|.....-. -++....+..++.+.+.+..+...|+.
T Consensus         8 ~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~   52 (247)
T PF06705_consen    8 ASINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEA   52 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444433222 233344444555555555555555444

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=92.04  E-value=1.6  Score=36.24  Aligned_cols=67  Identities=22%  Similarity=0.249  Sum_probs=38.5

Q ss_pred             HHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          148 MQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKR  214 (476)
Q Consensus       148 lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKL  214 (476)
                      .+.++.....|+.|..+.+.....+..+...|+.|+..+......+..+..++..+..+...+...+
T Consensus         4 ~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l   70 (74)
T PF12329_consen    4 EKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL   70 (74)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3455555666666666666666666666666666666666555555555555555555444444433

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=92.01  E-value=26  Score=40.15  Aligned_cols=191  Identities=16%  Similarity=0.113  Sum_probs=104.7

Q ss_pred             HHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHH
Q 011839           90 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI  169 (476)
Q Consensus        90 ~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~  169 (476)
                      |...-..+-+-.+-+.++-..++..|..+=..+=+....-+..++-.|-+.++++.++....-..-.-...+...-+...
T Consensus        23 L~~IW~~igE~~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLk  102 (660)
T KOG4302|consen   23 LQKIWDEIGESETERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLK  102 (660)
T ss_pred             HHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHH
Confidence            33444444444455555555566666554332222222223333333355555555554422111111111111222444


Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHhHHHHHHHHHHhhhhHhhh
Q 011839          170 QREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAAL---------------NMKRASLEERLKLLEADKDSWTQM  234 (476)
Q Consensus       170 Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasL---------------kQKLasLEeKL~~LKaERD~WLkk  234 (476)
                      +....+...+..|+...+....+...|..++++|..+.+..               ..+|..+..+|+.|+.+|..=|++
T Consensus       103 e~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlek  182 (660)
T KOG4302|consen  103 EQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEK  182 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555666666666666777777777777777777666554               257777778888887777665443


Q ss_pred             hhchHHHHhh-------------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          235 ESVSKETIAG-------------------------------LSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL  280 (476)
Q Consensus       235 EIsLke~Iss-------------------------------L~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseL  280 (476)
                      =+.+...|..                               -...+..|..-|..|+..+......++.|.+++-.|
T Consensus       183 v~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~L  259 (660)
T KOG4302|consen  183 VLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKKQRLQKLQDLRTKLLEL  259 (660)
T ss_pred             HHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344443322                               234456777788888888888888888888888766

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=91.84  E-value=4.9  Score=36.12  Aligned_cols=35  Identities=26%  Similarity=0.290  Sum_probs=16.5

Q ss_pred             HHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHH
Q 011839          154 LEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF  188 (476)
Q Consensus       154 LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~  188 (476)
                      ++..+..|+.+..+-.|+...|+.+|..+...++.
T Consensus        42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~   76 (107)
T PF09304_consen   42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNLED   76 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444443

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=91.83  E-value=19  Score=37.87  Aligned_cols=199  Identities=11%  Similarity=0.067  Sum_probs=91.0

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHH--HHhhhHHHHHHHHHHH
Q 011839          108 EATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI--QREGGLEMNIANLQSE  185 (476)
Q Consensus       108 e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~--Qkea~LEeqIkqLe~E  185 (476)
                      ..+....+..+.+..-..+..   ....++.-++.+....-+++...|..+..|+.+++.-.  +.......++..|...
T Consensus       147 ~~i~n~~~~~y~~~~~~~~~~---~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~  223 (444)
T TIGR03017       147 ATVANAFAQAYIDTNIELKVE---PAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQ  223 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHH
Confidence            344444444454444433322   12334466777777888888888888888888765431  1111122344444444


Q ss_pred             HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhHHHHHHHH---HHhhhhHhhhhh-chHHHHhhhHHHHH
Q 011839          186 KEFWLQKEAALEQKISQL-----------RDESAALNMKRASLEERLKLL---EADKDSWTQMES-VSKETIAGLSVDIT  250 (476)
Q Consensus       186 Is~~~qEla~LepeiekL-----------~~EeasLkQKLasLEeKL~~L---KaERD~WLkkEI-sLke~IssL~~~i~  250 (476)
                      ......+......++...           ......+.+++..++.++..|   +.++.    -.+ .++..|..++..+.
T Consensus       224 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~h----P~v~~l~~~i~~l~~~l~  299 (444)
T TIGR03017       224 LVAAQAQVMDASSKEGGSSGKDALPEVIANPIIQNLKTDIARAESKLAELSQRLGPNH----PQYKRAQAEINSLKSQLN  299 (444)
T ss_pred             HHHHHHHHHHHHHHHhccCCcccchhhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCC----cHHHHHHHHHHHHHHHHH
Confidence            443333332222222111           011234555666666665555   11111    122 33444444433332


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHHHHH
Q 011839          251 QLRMQ-VVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLIT  318 (476)
Q Consensus       251 sLq~Q-Ve~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl~~  318 (476)
                      ..... ...+..+...+......+..++..++.++..+....     .+...|..+.+.+..+.+.|+.
T Consensus       300 ~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~-----~~~~~L~r~~~~~~~~y~~ll~  363 (444)
T TIGR03017       300 AEIKKVTSSVGTNSRILKQREAELREALENQKAKVLELNRQR-----DEMSVLQRDVENAQRAYDAAMQ  363 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence            21111 111222222333333344444443333333333322     2556777788888877777776

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=91.60  E-value=1.9  Score=35.88  Aligned_cols=70  Identities=26%  Similarity=0.327  Sum_probs=49.1

Q ss_pred             HHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          209 ALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS  278 (476)
Q Consensus       209 sLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIs  278 (476)
                      ++...+++-.+.|.+|..|-..|-++|..+...|..|+..+..+..++..+...+...+.++..|+..+.
T Consensus         2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~   71 (74)
T PF12329_consen    2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK   71 (74)
T ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3455666777777788777777777777777777777777777777777777666666666666655543

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=91.60  E-value=15  Score=36.09  Aligned_cols=17  Identities=24%  Similarity=0.509  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 011839          115 VQQLQNECDLYKEKVQA  131 (476)
Q Consensus       115 IkqLqeEi~~lkqkLE~  131 (476)
                      |.++..+.+.+..+++.
T Consensus        29 l~~~~~~~~~l~~~i~~   45 (302)
T PF10186_consen   29 LQQLKEENEELRRRIEE   45 (302)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33344444444444333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=91.57  E-value=7.3  Score=40.48  Aligned_cols=28  Identities=32%  Similarity=0.540  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 011839          313 IDKLITENIELVEKVNDLSVKLDRQSVA  340 (476)
Q Consensus       313 v~kl~~en~~l~ekvneL~~~l~~~~~~  340 (476)
                      +-||+.|+..|.+.|-.|..+|++....
T Consensus       221 LkKl~~eke~L~~qv~klk~qLee~~~~  248 (302)
T PF09738_consen  221 LKKLADEKEELLEQVRKLKLQLEERQSE  248 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8999999999999999999988664443

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=90.86  E-value=4.7  Score=41.63  Aligned_cols=103  Identities=25%  Similarity=0.240  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHhhh--hHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHH
Q 011839          189 WLQKEAALEQKISQLRDESAALNMKRASLEERLKLL----EADKD--SWTQMES-VSKETIAGLSVDITQLRMQVVELEE  261 (476)
Q Consensus       189 ~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L----KaERD--~WLkkEI-sLke~IssL~~~i~sLq~QVe~Lee  261 (476)
                      .++++..|+.++++|+.+..+--.+|++||+.+.--    ..++.  .-|+.|. .|-+....+......|.+++..-+.
T Consensus        16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~   95 (307)
T PF10481_consen   16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKES   95 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHH
Confidence            467777788888888888887777888888776643    12222  1245555 5555555555555566666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011839          262 SRNNLLQENRQLKENVSSLRSQLSSDESKK  291 (476)
Q Consensus       262 e~s~LeeEIq~LkeqIseLqs~lqeLeeei  291 (476)
                      .+..++......+.+|..|...+.-++.+.
T Consensus        96 qv~~lEgQl~s~Kkqie~Leqelkr~KsEL  125 (307)
T PF10481_consen   96 QVNFLEGQLNSCKKQIEKLEQELKRCKSEL  125 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666666666666655

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=90.85  E-value=17  Score=35.98  Aligned_cols=28  Identities=21%  Similarity=0.266  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011839          136 TIQQLQRQNDLRMQKEATLEETIKQLRN  163 (476)
Q Consensus       136 kIkQLq~E~~d~lQk~A~LE~tIKdLks  163 (476)
                      +|.++.++...+......+...+..|+.
T Consensus        43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~   70 (251)
T PF11932_consen   43 RIDQWDDEKQELLAEYRQLEREIENLEV   70 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=90.83  E-value=2.7  Score=35.92  Aligned_cols=65  Identities=18%  Similarity=0.312  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          137 IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQR-------EGGLEMNIANLQSEKEFWLQKEAALEQKIS  201 (476)
Q Consensus       137 IkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qk-------ea~LEeqIkqLe~EIs~~~qEla~Lepeie  201 (476)
                      +.+|+......+-.++-++..|.+|+.++....+.       +..|..+..+|+.+-..|...+..|..+++
T Consensus         6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~   77 (79)
T PRK15422          6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME   77 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            45566666666667777777777777776666655       444777777777777777777776666554

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=90.73  E-value=33  Score=38.60  Aligned_cols=29  Identities=7%  Similarity=0.073  Sum_probs=16.1

Q ss_pred             hhHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 011839          165 NDLHIQREGGLEMNIANLQSEKEFWLQKE  193 (476)
Q Consensus       165 ~es~~Qkea~LEeqIkqLe~EIs~~~qEl  193 (476)
                      .+...+.+..++.+++.++.+......++
T Consensus       257 GG~~~~~r~~Le~ei~~le~e~~e~~~~l  285 (650)
T TIGR03185       257 GGDLFEEREQLERQLKEIEAARKANRAQL  285 (650)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555666666666666655444444

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG2991 consensus Splicing regulator [RNA processing and modification]

Probab=90.64  E-value=23  Score=36.64  Aligned_cols=99  Identities=14%  Similarity=0.176  Sum_probs=54.3

Q ss_pred             hhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHH--HH
Q 011839          106 QKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIAN--LQ  183 (476)
Q Consensus       106 ~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkq--Le  183 (476)
                      +.-.++...|..|..+-..+++..+.        ....-.-++...|+.|-...++.+.+....+...=-..+++.  |.
T Consensus       101 ~~~rll~d~i~nLk~se~~lkqQ~~~--------a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llD  172 (330)
T KOG2991|consen  101 KYTRLLSDDITNLKESEEKLKQQQQE--------AARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLD  172 (330)
T ss_pred             cccchhHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhC
Confidence            44456777777777766666666422        333445566677777777777777666655544433333222  22


Q ss_pred             HHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          184 SEKE----FWLQKEAALEQKISQLRDESAALNM  212 (476)
Q Consensus       184 ~EIs----~~~qEla~LepeiekL~~EeasLkQ  212 (476)
                      -.|.    ....++...+.+++.++++.++|+.
T Consensus       173 PAinl~F~rlK~ele~tk~Klee~QnelsAwkF  205 (330)
T KOG2991|consen  173 PAINLFFLRLKGELEQTKDKLEEAQNELSAWKF  205 (330)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhheeee
Confidence            2232    2333445555666666666665543

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=90.53  E-value=2.7  Score=34.70  Aligned_cols=64  Identities=23%  Similarity=0.278  Sum_probs=40.2

Q ss_pred             HHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011839          154 LEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL  217 (476)
Q Consensus       154 LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasL  217 (476)
                      ||..+.-|++.+++...+-+..+..++.|..+-+.....+...-.++.+|+.++..+++.+..+
T Consensus         3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~   66 (69)
T PF14197_consen    3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL   66 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4455555566665555555666666666666666666666666666666666666666665544

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=89.97  E-value=16  Score=39.81  Aligned_cols=100  Identities=22%  Similarity=0.255  Sum_probs=59.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHH
Q 011839          172 EGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQ  251 (476)
Q Consensus       172 ea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~s  251 (476)
                      ++.+.+++-+|..++++..+.-+.+.++.-.+..+-..+..++..+|..|+.||.|-..+. .|     .++ .+.+..-
T Consensus         8 ~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~-e~-----~v~-~~a~~~~   80 (459)
T KOG0288|consen    8 KSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLN-EE-----RVR-EEATEKT   80 (459)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----HHH-HHHHHHH
Confidence            4455666666666666666666667777777777777777777777777777766555421 11     222 4444555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          252 LRMQVVELEESRNNLLQENRQLKENVS  278 (476)
Q Consensus       252 Lq~QVe~Leee~s~LeeEIq~LkeqIs  278 (476)
                      +..++..++...--...+|..++++-.
T Consensus        81 ~t~~~~~~en~~~r~~~eir~~~~q~~  107 (459)
T KOG0288|consen   81 LTVDVLIAENLRIRSLNEIRELREQKA  107 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            555555555555555555555555444

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=89.96  E-value=31  Score=37.03  Aligned_cols=10  Identities=30%  Similarity=0.441  Sum_probs=5.5

Q ss_pred             CCceeeccCC
Q 011839          411 SGEIVQIPLD  420 (476)
Q Consensus       411 ~~eiv~~~ld  420 (476)
                      .|.|..|.-|
T Consensus       393 ~G~V~~Is~~  402 (457)
T TIGR01000       393 DGTITSISSA  402 (457)
T ss_pred             EEEEEEEcCC
Confidence            4566666544

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=89.90  E-value=20  Score=40.00  Aligned_cols=134  Identities=22%  Similarity=0.284  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhh------HhhH-H--------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 011839           79 QHLLQREAMAILEETVKHLRNERESHIQK------EATL-E--------GTVQQLQNECDLYKEKVQATLEETIQQLQRQ  143 (476)
Q Consensus        79 ~~~~q~e~~~~~eeti~~l~~e~d~~~~~------e~~~-E--------k~IkqLqeEi~~lkqkLE~llqEkIkQLq~E  143 (476)
                      -..+||+-...|.+.+|-+++||....+|      |++. +        .-+++|++-++...     ..++.|.+.-.+
T Consensus       153 ~S~~~~~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~-----s~~eel~~kt~e  227 (596)
T KOG4360|consen  153 RSAFQRELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQAR-----SGQEELQSKTKE  227 (596)
T ss_pred             hhhHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence            35788888889999999999998764333      2221 1        12223332222221     122222333333


Q ss_pred             HHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011839          144 NDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKL  223 (476)
Q Consensus       144 ~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~  223 (476)
                      +.....+..+|.-.|.+++.+...+...+..+-+   .|+.-++    --..+..++..+.+.++...+.+.+.++.|+-
T Consensus       228 l~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~---~Lq~~~d----a~~ql~aE~~EleDkyAE~m~~~~EaeeELk~  300 (596)
T KOG4360|consen  228 LSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDE---HLQAYKD----AQRQLTAELEELEDKYAECMQMLHEAEEELKC  300 (596)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333334444444444444443333333322221   2222222    22567889999999999999999999999998


Q ss_pred             H
Q 011839          224 L  224 (476)
Q Consensus       224 L  224 (476)
                      |
T Consensus       301 l  301 (596)
T KOG4360|consen  301 L  301 (596)
T ss_pred             h
Confidence            8

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=89.74  E-value=34  Score=37.30  Aligned_cols=59  Identities=15%  Similarity=0.074  Sum_probs=47.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhH
Q 011839          173 GGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW  231 (476)
Q Consensus       173 a~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~W  231 (476)
                      ...+.=-+++..+..+...++..|..+|.+-==+++.|.+.+..-...+++-+.|...+
T Consensus       410 sdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQEL  468 (593)
T KOG4807|consen  410 SDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQEL  468 (593)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            33444456777888888999999999999999999999999888877788777776664

>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]

Probab=89.65  E-value=31  Score=36.65  Aligned_cols=39  Identities=28%  Similarity=0.362  Sum_probs=32.3

Q ss_pred             ccchhhhHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhh
Q 011839          298 EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDR  336 (476)
Q Consensus       298 ~~e~~~~qie~a~~~v~kl~~en~~l~ekvneL~~~l~~  336 (476)
                      +-+.|..+|....-|..-|.+|-.+|++++-.|.+.+.-
T Consensus       293 ~~~~lq~kiq~LekLcRALq~ernel~~~~~~~e~~v~~  331 (391)
T KOG1850|consen  293 EYETLQKKIQRLEKLCRALQTERNELNKKLEDLEAQVSA  331 (391)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcccch
Confidence            667888899999999999999999999999888664433

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=89.61  E-value=16  Score=33.31  Aligned_cols=56  Identities=18%  Similarity=0.274  Sum_probs=25.8

Q ss_pred             HHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          151 EATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDE  206 (476)
Q Consensus       151 ~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~E  206 (476)
                      ...+..++..+...+......-..|.+++..++.++..+..++..+..++..+...
T Consensus        54 ~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~  109 (151)
T PF11559_consen   54 REDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAK  109 (151)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444455555555554444444444444443333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.58  E-value=14  Score=37.05  Aligned_cols=41  Identities=27%  Similarity=0.328  Sum_probs=17.9

Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          242 IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRS  282 (476)
Q Consensus       242 IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs  282 (476)
                      |..++..+.+++.+-......+.-+-.+..-|+..|+.++.
T Consensus        62 In~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~  102 (230)
T PF10146_consen   62 INTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRK  102 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444445544433

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=89.54  E-value=23  Score=35.02  Aligned_cols=109  Identities=12%  Similarity=0.234  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHH-HHHHHHHHHHHH
Q 011839          115 VQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIAN-LQSEKEFWLQKE  193 (476)
Q Consensus       115 IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkq-Le~EIs~~~qEl  193 (476)
                      +..+...+......|+.-...+       +..--.....+...|..|+..+....+++......|.. ++..+......+
T Consensus         7 L~~i~e~~~~f~~~le~e~~~R-------r~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v   79 (247)
T PF06705_consen    7 LASINERFSGFESDLENEKRQR-------REQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERV   79 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555444444332222       33334456666777777777777777777665555433 233333333333


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 011839          194 -AALEQKISQLRDESAALNMKRASLEERLKLLEADKDS  230 (476)
Q Consensus       194 -a~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~  230 (476)
                       ..+......+......|..++..++..+..-+..|..
T Consensus        80 ~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~  117 (247)
T PF06705_consen   80 ENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQ  117 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence             4445555666666666666677776666655555554

>PRK10698 phage shock protein PspA; Provisional

Probab=89.54  E-value=23  Score=34.98  Aligned_cols=51  Identities=14%  Similarity=0.191  Sum_probs=32.7

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011839          107 KEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETI  158 (476)
Q Consensus       107 ~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tI  158 (476)
                      -+.+++-.|+++++.+...++.+-...... +.++.+...+-...+..+.+.
T Consensus        25 P~k~l~q~i~em~~~l~~~r~alA~~~A~~-k~~er~~~~~~~~~~~~e~kA   75 (222)
T PRK10698         25 PQKLVRLMIQEMEDTLVEVRSTSARALAEK-KQLTRRIEQAEAQQVEWQEKA   75 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            356788888888888888888765555555 555555555555444444443

>TIGR02977 phageshock_pspA phage shock protein A

Probab=89.47  E-value=22  Score=34.69  Aligned_cols=116  Identities=17%  Similarity=0.203  Sum_probs=70.0

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhh-HHHHHHHHHHH
Q 011839          107 KEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGG-LEMNIANLQSE  185 (476)
Q Consensus       107 ~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~-LEeqIkqLe~E  185 (476)
                      -+.+++..|+++++.+...++.+-...... +.++.+++.+-...+..+.+.       ....+.-.. |....   =.+
T Consensus        25 P~~~l~q~irem~~~l~~ar~~lA~~~a~~-k~~e~~~~~~~~~~~~~~~~A-------~~Al~~G~EdLAr~A---l~~   93 (219)
T TIGR02977        25 PEKMIRLIIQEMEDTLVEVRTTSARTIADK-KELERRVSRLEAQVADWQEKA-------ELALSKGREDLARAA---LIE   93 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-------HHHHHCCCHHHHHHH---HHH
Confidence            456888899999999998888875555555 555555544444444444443       333332211 11111   114


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhh
Q 011839          186 KEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQ  233 (476)
Q Consensus       186 Is~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLk  233 (476)
                      ...+......+..+|..+......++.++..++.++..+++-++.+.-
T Consensus        94 k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~a  141 (219)
T TIGR02977        94 KQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAI  141 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556666777777777777777777777777777777666665433

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=89.35  E-value=25  Score=35.21  Aligned_cols=34  Identities=15%  Similarity=0.158  Sum_probs=17.0

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          170 QREGGLEMNIANLQSEKEFWLQKEAALEQKISQL  203 (476)
Q Consensus       170 Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL  203 (476)
                      ..+..|+.+|.+++.+.......+..-......|
T Consensus         5 r~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~L   38 (246)
T PF00769_consen    5 REKQELEERLRQMEEEMRRAQEALEESEETAEEL   38 (246)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555666666665555544444433333333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []

Probab=88.97  E-value=19  Score=38.06  Aligned_cols=143  Identities=17%  Similarity=0.221  Sum_probs=85.9

Q ss_pred             HHHHHHHhHHHHHHHHHhhhhHHHH---------HhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH--
Q 011839          146 LRMQKEATLEETIKQLRNQNDLHIQ---------REGGLEMNIANLQSEKEFW-LQKEAALEQKISQLRDESAALNMK--  213 (476)
Q Consensus       146 d~lQk~A~LE~tIKdLks~~es~~Q---------kea~LEeqIkqLe~EIs~~-~qEla~LepeiekL~~EeasLkQK--  213 (476)
                      ..+.++|.+|-+|..|+.-++....         ...-+-..|..|...++-+ ...+..+..++..|..+...+..+  
T Consensus       206 ~~la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~  285 (388)
T PF04912_consen  206 QQLARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRK  285 (388)
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3467999999999999999988222         1223445566666555533 123455555555554444443332  


Q ss_pred             ----HHhHHHHHHHHHHhhhhH--hhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011839          214 ----RASLEERLKLLEADKDSW--TQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS  286 (476)
Q Consensus       214 ----LasLEeKL~~LKaERD~W--LkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqe  286 (476)
                          ....+.|+..|+.=-..|  +..-+ .+=.++    ..+..|=.+.......+..|+.....+...+..|...+..
T Consensus       286 ~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL----~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~  361 (388)
T PF04912_consen  286 EAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERL----KTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNK  361 (388)
T ss_pred             cccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                234566777775554554  22222 222233    3345566666677777777888888888888888888877


Q ss_pred             hhhhhh
Q 011839          287 DESKKL  292 (476)
Q Consensus       287 Leeei~  292 (476)
                      ++..+.
T Consensus       362 ve~~~~  367 (388)
T PF04912_consen  362 VEEKFK  367 (388)
T ss_pred             HHHHHH
Confidence            777754

It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex

>PRK10884 SH3 domain-containing protein; Provisional

Probab=88.93  E-value=5.4  Score=39.17  Aligned_cols=36  Identities=14%  Similarity=0.183  Sum_probs=19.0

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          241 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKEN  276 (476)
Q Consensus       241 ~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~Lkeq  276 (476)
                      .+..++.++..|..++..++.+...+..+++.++..
T Consensus       133 ~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~  168 (206)
T PRK10884        133 VINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT  168 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555555555555443

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=88.77  E-value=0.79  Score=47.94  Aligned_cols=126  Identities=17%  Similarity=0.188  Sum_probs=25.6

Q ss_pred             HHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011839          145 DLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL  224 (476)
Q Consensus       145 ~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L  224 (476)
                      ..+...+..+|-.+..|..........-..|...|..+...+....-++..|...+..++...+.+              
T Consensus        31 s~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~l--------------   96 (326)
T PF04582_consen   31 SPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSL--------------   96 (326)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence            333444555555555555554444444444444444444444443333333333333333333222              


Q ss_pred             HHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 011839          225 EADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL  292 (476)
Q Consensus       225 KaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~  292 (476)
                              ...| ++...+......+..|+..|..++.++.++...+-.+--.|.+|+.|+..|+....
T Consensus        97 --------sssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~~s  157 (326)
T PF04582_consen   97 --------SSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESGSS  157 (326)
T ss_dssp             -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             --------hhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcCCC
Confidence                    2333 44445555555555566666666666666666666666666667777777776654

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=88.68  E-value=28  Score=34.79  Aligned_cols=48  Identities=19%  Similarity=0.248  Sum_probs=28.4

Q ss_pred             chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011839          237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL  284 (476)
Q Consensus       237 sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~l  284 (476)
                      +++..+..+...+..+...+..|+..+..|...|.+++.+...+.-+.
T Consensus        96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~  143 (225)
T COG1842          96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARK  143 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555566666666666666666666666666666666665555543333

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=88.64  E-value=14  Score=31.85  Aligned_cols=68  Identities=19%  Similarity=0.211  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHH
Q 011839          191 QKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVE  258 (476)
Q Consensus       191 qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~  258 (476)
                      .|+-.|+..|..+..........+..+|.++..|..|+..-=++--...+....+..++..|..++..
T Consensus         3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~K   70 (96)
T PF08647_consen    3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSK   70 (96)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            46667777777787777777777777777777776666553223224444444444444444444443

>PF13166 AAA_13: AAA domain

Probab=88.55  E-value=46  Score=37.22  Aligned_cols=22  Identities=18%  Similarity=0.060  Sum_probs=10.5

Q ss_pred             CCCcCCCchhHH-HHHHhhcccc
Q 011839          446 DAPLIGAPFRLV-SFVAKYVSGA  467 (476)
Q Consensus       446 dapligapfrli-sfva~yvsga  467 (476)
                      .+..||-.-|-| -...+|.-|.
T Consensus       632 ~~~~~~N~~RriLE~yf~~~~~~  654 (712)
T PF13166_consen  632 SAYNIPNVMRRILEAYFKFPGKI  654 (712)
T ss_pred             hHHhhHHHhHHHHHHHHhhCCCC
Confidence            455666555532 2225554443

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=88.49  E-value=41  Score=39.16  Aligned_cols=25  Identities=16%  Similarity=0.024  Sum_probs=13.2

Q ss_pred             HHHHHhHHHHHHHHHHHHHHhhhhh
Q 011839          306 IEAAGALIDKLITENIELVEKVNDL  330 (476)
Q Consensus       306 ie~a~~~v~kl~~en~~l~ekvneL  330 (476)
                      +-++.-.-+|.++=|......--++
T Consensus       300 L~~~rdep~kv~~l~~q~w~r~qq~  324 (916)
T KOG0249|consen  300 LKALRDEPEKVQTLNEQEWARDQQA  324 (916)
T ss_pred             HHHhhhchHHHHHHHHHHHHHHHHH
Confidence            4444555556666666666543333

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=88.43  E-value=34  Score=36.57  Aligned_cols=50  Identities=14%  Similarity=0.149  Sum_probs=20.0

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011839          241 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK  290 (476)
Q Consensus       241 ~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeee  290 (476)
                      -|..+..++..|+.++..+..+..+.+++.++|...+++-....+.|-.+
T Consensus       135 li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~e  184 (401)
T PF06785_consen  135 LIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDE  184 (401)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333334444444444444444444444444444333333333333

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=88.41  E-value=28  Score=34.53  Aligned_cols=42  Identities=17%  Similarity=0.273  Sum_probs=21.3

Q ss_pred             chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS  278 (476)
Q Consensus       237 sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIs  278 (476)
                      .|.+.+..+..++.+|......+....+....+|..+-..+.
T Consensus       113 eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLk  154 (205)
T KOG1003|consen  113 ELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLK  154 (205)
T ss_pred             HHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence            444455555555555555555555555555555554444433

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=88.33  E-value=18  Score=39.34  Aligned_cols=61  Identities=18%  Similarity=0.234  Sum_probs=29.3

Q ss_pred             HHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011839          156 ETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRAS  216 (476)
Q Consensus       156 ~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLas  216 (476)
                      .++.+|...+-...++...+-++..-++.+......++...+.++..|++++..+......
T Consensus        13 qr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~   73 (459)
T KOG0288|consen   13 QRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR   73 (459)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444433333344444444444455555555555555555555555555555544443

>PRK10884 SH3 domain-containing protein; Provisional

Probab=88.26  E-value=8.4  Score=37.88  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=12.8

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHH
Q 011839          108 EATLEGTVQQLQNECDLYKEKV  129 (476)
Q Consensus       108 e~~~Ek~IkqLqeEi~~lkqkL  129 (476)
                      .......+.+|+.++..++.+|
T Consensus        88 ~p~~~~rlp~le~el~~l~~~l  109 (206)
T PRK10884         88 TPSLRTRVPDLENQVKTLTDKL  109 (206)
T ss_pred             CccHHHHHHHHHHHHHHHHHHH
Confidence            3344455666666666666554

>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.06  E-value=45  Score=36.55  Aligned_cols=28  Identities=32%  Similarity=0.342  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q 011839          138 QQLQRQNDLRMQKEATLEETIKQLRNQN  165 (476)
Q Consensus       138 kQLq~E~~d~lQk~A~LE~tIKdLks~~  165 (476)
                      +||+.|++.+++..+.+|.+++.+.+..
T Consensus       302 rqlqrdlE~~~~~r~ele~~~~qs~ed~  329 (542)
T KOG0993|consen  302 RQLQRDLEELIETRAELEHTEQQSQEDI  329 (542)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            5777777777777777777777776643

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=87.88  E-value=49  Score=36.72  Aligned_cols=175  Identities=18%  Similarity=0.171  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Q 011839          112 EGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQ  191 (476)
Q Consensus       112 Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~q  191 (476)
                      +-.|+.|+-.+..+..+++.+.-...+|     .-++--+.+|+..|.+|=+..=.-+=.+...+.++..|+...+.-..
T Consensus       330 q~~IqdLq~sN~yLe~kvkeLQ~k~~kQ-----qvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk  404 (527)
T PF15066_consen  330 QNRIQDLQCSNLYLEKKVKELQMKITKQ-----QVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQK  404 (527)
T ss_pred             HHHHHHhhhccHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            3445555555555555544433222111     11223445556666666555555555566666777777666554333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHH----HHHH
Q 011839          192 KEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESR----NNLL  267 (476)
Q Consensus       192 Ela~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~----s~Le  267 (476)
                      .|..-..+-+.|.=+...++.....|+++-..--..|+..+..=+.+.+.++.....+..|+.--..|+...    +-|.
T Consensus       405 ~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLk  484 (527)
T PF15066_consen  405 HLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLK  484 (527)
T ss_pred             HHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333334334444444445555554444556677777777777777777666666665554544332    2222


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhh
Q 011839          268 QENRQLKENVSSLRSQLSSDESKK  291 (476)
Q Consensus       268 eEIq~LkeqIseLqs~lqeLeeei  291 (476)
                      .|-......+=.|+..++..+.+.
T Consensus       485 rEKe~~EqefLslqeEfQk~eken  508 (527)
T PF15066_consen  485 REKETREQEFLSLQEEFQKHEKEN  508 (527)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333333333334444444444433

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=87.76  E-value=1.1  Score=47.05  Aligned_cols=112  Identities=19%  Similarity=0.228  Sum_probs=26.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHH
Q 011839          173 GGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQ  251 (476)
Q Consensus       173 a~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~s  251 (476)
                      ..|+..+..|..-+.....+++.|...+..+....+.+.-.|..+...+..|+        ..+ .+...|+.+...+..
T Consensus        38 saLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq--------~Sl~~lsssVs~lS~~ls~  109 (326)
T PF04582_consen   38 SALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQ--------SSLSSLSSSVSSLSSTLSD  109 (326)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhHHhhhhhhhh
Confidence            33455555666666666666666666666666666666666666665555443        356 777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 011839          252 LRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL  292 (476)
Q Consensus       252 Lq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~  292 (476)
                      ....|..|+.....+...+..|+..++....+|..|+.++.
T Consensus       110 h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~  150 (326)
T PF04582_consen  110 HSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVK  150 (326)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHH
Confidence            77778888888888888888888888888888888887775

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=87.75  E-value=80  Score=38.99  Aligned_cols=43  Identities=14%  Similarity=0.244  Sum_probs=17.7

Q ss_pred             hhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 011839          105 IQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRM  148 (476)
Q Consensus       105 ~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~l  148 (476)
                      ...-.++...++.+++++....-++.....+. .++..+.++..
T Consensus       725 ~~~~~~~~~~~~l~~~~i~e~~~~l~~~~~el-~~~~~~~e~~~  767 (1294)
T KOG0962|consen  725 LKLKPTFGSIIKLIDKEIPELEKELQEVYEEL-GDLSEEEEDDE  767 (1294)
T ss_pred             HhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHH-HhhhhhhhHHH
Confidence            33333444444444445444444443322222 44444444333

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=87.58  E-value=7.8  Score=33.95  Aligned_cols=41  Identities=20%  Similarity=0.343  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011839          246 SVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS  286 (476)
Q Consensus       246 ~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqe  286 (476)
                      ...+..|...++.++..+..+......++.++.+++..++.
T Consensus        66 ~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~  106 (110)
T TIGR02338        66 EEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE  106 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344555555555555555555555555555555555443

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=87.45  E-value=28  Score=33.47  Aligned_cols=116  Identities=20%  Similarity=0.266  Sum_probs=60.9

Q ss_pred             HHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-H
Q 011839          145 DLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK-L  223 (476)
Q Consensus       145 ~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~-~  223 (476)
                      ..+=|.+..++..|.+++.........+..++.++..++..+..|..                            +.. .
T Consensus        26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~----------------------------~A~~A   77 (221)
T PF04012_consen   26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEK----------------------------QAELA   77 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHH
Confidence            34444444555555555555555555555555555555555444443                            333 2


Q ss_pred             HHHhhhhH----hhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011839          224 LEADKDSW----TQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE  288 (476)
Q Consensus       224 LKaERD~W----LkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLe  288 (476)
                      |..+++.+    |..-..+...+..+...+..+..++..|+..+..+...+..++.+...+..+...-.
T Consensus        78 l~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~  146 (221)
T PF04012_consen   78 LAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAK  146 (221)
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444332    222225556666666666666666666666666666666666666665554444333

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF13514 AAA_27: AAA domain

Probab=87.25  E-value=75  Score=38.15  Aligned_cols=40  Identities=30%  Similarity=0.402  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011839          250 TQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES  289 (476)
Q Consensus       250 ~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLee  289 (476)
                      ..+..++..++.++..+..++..+...+..++.++..+..
T Consensus       892 ~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~  931 (1111)
T PF13514_consen  892 DELEAELEELEEELEELEEELEELQEERAELEQELEALEG  931 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3445555555555555666666666655555555555544

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=87.23  E-value=27  Score=35.84  Aligned_cols=114  Identities=22%  Similarity=0.207  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHH
Q 011839          113 GTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQ-------KEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSE  185 (476)
Q Consensus       113 k~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQ-------k~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~E  185 (476)
                      +.+++|-.+|...=-+|=.+|... -.+...+...+.       -+..+...|+.+..+.....+.-..+...-+.|+..
T Consensus       120 k~~R~Laseit~~GA~LydlL~kE-~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~K  198 (267)
T PF10234_consen  120 KAARQLASEITQRGASLYDLLGKE-VELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAK  198 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhch-HhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666667777666666655555 355555555555       333444455555555555555556666666666777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 011839          186 KEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEAD  227 (476)
Q Consensus       186 Is~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaE  227 (476)
                      |..+.+++.+...++..|+...=++......+|++++.|+..
T Consensus       199 Iekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~  240 (267)
T PF10234_consen  199 IEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEI  240 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777777777777777778888888777443

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=87.10  E-value=23  Score=31.99  Aligned_cols=85  Identities=25%  Similarity=0.302  Sum_probs=40.0

Q ss_pred             HHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011839          144 NDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKL  223 (476)
Q Consensus       144 ~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~  223 (476)
                      +..+--..+.++..|...+..++-....+..|...+..|+....+..+.++.|..+|..+......  .|++.++-.-+.
T Consensus        11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~--eK~ak~~l~~r~   88 (107)
T PF09304_consen   11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED--EKQAKLELESRL   88 (107)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence            333344444455555555555555555555555555555555555555555555555555544444  333333333333


Q ss_pred             HHHhhhh
Q 011839          224 LEADKDS  230 (476)
Q Consensus       224 LKaERD~  230 (476)
                      +++++|.
T Consensus        89 ~k~~~dk   95 (107)
T PF09304_consen   89 LKAQKDK   95 (107)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhhh
Confidence            4444443

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.96  E-value=10  Score=32.02  Aligned_cols=52  Identities=17%  Similarity=0.232  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHH
Q 011839          137 IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF  188 (476)
Q Consensus       137 IkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~  188 (476)
                      +.+|+......+-.++-++..|.+|+.++.+..|....+......|+++...
T Consensus         6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneq   57 (79)
T COG3074           6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQ   57 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555666666666666666665555555444444444444443

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=86.82  E-value=33  Score=33.69  Aligned_cols=13  Identities=15%  Similarity=0.279  Sum_probs=6.4

Q ss_pred             HHHHHHHHHHHhh
Q 011839           86 AMAILEETVKHLR   98 (476)
Q Consensus        86 ~~~~~eeti~~l~   98 (476)
                      ..+.++.|+..|.
T Consensus        19 ~i~~l~~al~~L~   31 (240)
T PF12795_consen   19 LIQDLQQALSFLD   31 (240)
T ss_pred             HHHHHHHHHHHHH
Confidence            3445555555543

>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain

Probab=86.52  E-value=31  Score=34.01  Aligned_cols=23  Identities=43%  Similarity=0.611  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 011839          313 IDKLITENIELVEKVNDLSVKLDRQSV  339 (476)
Q Consensus       313 v~kl~~en~~l~ekvneL~~~l~~~~~  339 (476)
                      .+.|+.||.+|+|    ||.-||....
T Consensus       124 q~~L~rEN~eLKE----lcl~LDeer~  146 (195)
T PF10226_consen  124 QEELIRENLELKE----LCLYLDEERP  146 (195)
T ss_pred             HHHHHHhHHHHHH----HHHHHhcccc
Confidence            4678999999995    9999998883

Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.

>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition

Probab=86.39  E-value=4.1  Score=43.06  Aligned_cols=79  Identities=20%  Similarity=0.360  Sum_probs=47.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhc-----ccchhhhHHHHHHhHHHHHHH
Q 011839          244 GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATS-----EQKDFSTQIEAAGALIDKLIT  318 (476)
Q Consensus       244 sL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~-----~~e~~~~qie~a~~~v~kl~~  318 (476)
                      ++..-+..+...|..++..+..+...++.+...+..+...+..|+...-.....     |.++-  +---++.++++++.
T Consensus       141 ~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNiRIiGiPEg~e~--~~k~~~~~l~~ii~  218 (370)
T PF02994_consen  141 SLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNIRIIGIPEGEEE--EGKGPENFLEEIIP  218 (370)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----TT----HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCceeEEecCCCccc--cccCHHHHHHHHHH
Confidence            445555666666666666667777777777777777777777777777655443     33221  23346788999999


Q ss_pred             HHH-HHH
Q 011839          319 ENI-ELV  324 (476)
Q Consensus       319 en~-~l~  324 (476)
                      +|- .|.
T Consensus       219 e~~p~L~  225 (370)
T PF02994_consen  219 ENFPNLP  225 (370)
T ss_dssp             HH-CHHH
T ss_pred             HhCcCcc
Confidence            874 343

Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.36  E-value=43  Score=34.48  Aligned_cols=54  Identities=19%  Similarity=0.312  Sum_probs=28.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011839          109 ATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRN  163 (476)
Q Consensus       109 ~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks  163 (476)
                      .=++..|..|+.++..+..++. .+.++|.+++.+...+-++++.++.+|.+.+.
T Consensus        48 ~~~q~ei~~L~~qi~~~~~k~~-~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~  101 (265)
T COG3883          48 KNIQNEIESLDNQIEEIQSKID-ELQKEIDQSKAEIKKLQKEIAELKENIVERQE  101 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566666666666666632 24444455555555555555555555544443

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=86.31  E-value=58  Score=37.47  Aligned_cols=87  Identities=16%  Similarity=0.200  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIA---NLQSEKEFWLQKEAALEQKISQLRDESAALNMKR  214 (476)
Q Consensus       138 kQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIk---qLe~EIs~~~qEla~LepeiekL~~EeasLkQKL  214 (476)
                      ..+..++..+.........++.+..............|++.+.   .++..+.........+..++..|+.+-..+++.+
T Consensus       178 ~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~  257 (670)
T KOG0239|consen  178 LKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAEL  257 (670)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555544445555544444444444444554433   3444444444444444444555555555554444


Q ss_pred             HhHHHHHHHH
Q 011839          215 ASLEERLKLL  224 (476)
Q Consensus       215 asLEeKL~~L  224 (476)
                      ..+......+
T Consensus       258 ~~l~~~~~~~  267 (670)
T KOG0239|consen  258 KELNDQVSLL  267 (670)
T ss_pred             HHHHHHHHHH
Confidence            4444444433

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=86.19  E-value=48  Score=34.88  Aligned_cols=25  Identities=12%  Similarity=0.121  Sum_probs=14.2

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHH
Q 011839          107 KEATLEGTVQQLQNECDLYKEKVQA  131 (476)
Q Consensus       107 ~e~~~Ek~IkqLqeEi~~lkqkLE~  131 (476)
                      .-..++..+.+++.++.....+|+.
T Consensus       172 ~~~fl~~ql~~~~~~l~~ae~~l~~  196 (444)
T TIGR03017       172 AALWFVQQIAALREDLARAQSKLSA  196 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666666666666555544

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=86.16  E-value=30  Score=32.46  Aligned_cols=37  Identities=16%  Similarity=0.152  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          179 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA  215 (476)
Q Consensus       179 IkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLa  215 (476)
                      |..|+.-+....+-++-+..++..+..+...++..+.
T Consensus        65 L~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~  101 (177)
T PF13870_consen   65 LLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELK  101 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444443333333333

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=85.64  E-value=19  Score=34.81  Aligned_cols=99  Identities=20%  Similarity=0.255  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHH----HHHH
Q 011839          190 LQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEE----SRNN  265 (476)
Q Consensus       190 ~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Lee----e~s~  265 (476)
                      .+....+...+.+|..+...+..++..++.++..++.+|...-... .+-..+..+...+..|+.++..+..    .+..
T Consensus        61 s~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~-~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~  139 (188)
T PF03962_consen   61 SQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEERE-ELLEELEELKKELKELKKELEKYSENDPEKIEK  139 (188)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            3444566666777777777777777777777777766666620000 2223344444444444444443322    3344


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhh
Q 011839          266 LLQENRQLKENVSSLRSQLSSDES  289 (476)
Q Consensus       266 LeeEIq~LkeqIseLqs~lqeLee  289 (476)
                      +..++..+++.++.|...|-.|..
T Consensus       140 ~~~~~~~~~~~anrwTDNI~~l~~  163 (188)
T PF03962_consen  140 LKEEIKIAKEAANRWTDNIFSLKS  163 (188)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHH
Confidence            444555555555555554444443

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>PLN02939 transferase, transferring glycosyl groups

Probab=85.59  E-value=58  Score=39.07  Aligned_cols=15  Identities=33%  Similarity=0.607  Sum_probs=8.9

Q ss_pred             HHHHHHHHHhhhhhh
Q 011839          317 ITENIELVEKVNDLS  331 (476)
Q Consensus       317 ~~en~~l~ekvneL~  331 (476)
                      +.+|++|..||..|-
T Consensus       323 ~~~~~~~~~~~~~~~  337 (977)
T PLN02939        323 LDQNQDLRDKVDKLE  337 (977)
T ss_pred             hccchHHHHHHHHHH
Confidence            456666666665553

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=85.49  E-value=60  Score=36.48  Aligned_cols=53  Identities=15%  Similarity=0.214  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHhhhhHhhhhh
Q 011839          184 SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL---EADKDSWTQMES  236 (476)
Q Consensus       184 ~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L---KaERD~WLkkEI  236 (476)
                      ..+.....+++....++..+.+++..|.-.++.+..|++-+   +.+++..|+.-+
T Consensus       212 ~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~  267 (596)
T KOG4360|consen  212 TQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYK  267 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444455566666677777788888888888888877   666666555443

>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=85.37  E-value=77  Score=36.53  Aligned_cols=185  Identities=17%  Similarity=0.177  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          136 TIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA  215 (476)
Q Consensus       136 kIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLa  215 (476)
                      ++.++...+..+++..|..|..+.+|-..++-.---..       +....-...++.+..|.|.++.|..+.+.=...+.
T Consensus        55 kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~-------~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~  127 (660)
T KOG4302|consen   55 KVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGE-------ISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFK  127 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc-------cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44666667777777777777777777665432211111       00011115566677777777777777777777777


Q ss_pred             hHHHHHHHH---HHhh----hhHhhhhhchH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 011839          216 SLEERLKLL---EADK----DSWTQMESVSK-ETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRS-----  282 (476)
Q Consensus       216 sLEeKL~~L---KaER----D~WLkkEIsLk-e~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs-----  282 (476)
                      .+-.++..|   -++.    ..++-.+-++- +.+       ..++.++..|+.++..-.+++..++..|..+-.     
T Consensus       128 el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kL-------eelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~  200 (660)
T KOG4302|consen  128 ELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKL-------EELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLD  200 (660)
T ss_pred             HHHHHHHHHHHHhcCCccCCcccccCcccccHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            777777766   2222    22222333222 333       445555555555555555555555555554422     


Q ss_pred             ---hhhhhhhhhhhhhh-cccchhhhHHHHHHhHHHHHHHHHH-------HHHHhhhhhhhhh
Q 011839          283 ---QLSSDESKKLQHAT-SEQKDFSTQIEAAGALIDKLITENI-------ELVEKVNDLSVKL  334 (476)
Q Consensus       283 ---~lqeLeeei~~~~~-~~~e~~~~qie~a~~~v~kl~~en~-------~l~ekvneL~~~l  334 (476)
                         -+..++.....+.- -..-..+.-++..|.+|.+|-.+=-       +|..++-+|--.|
T Consensus       201 ~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn~l  263 (660)
T KOG4302|consen  201 FSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKKQRLQKLQDLRTKLLELWNLL  263 (660)
T ss_pred             cccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence               22333333322210 0123445566666666666655443       4444444444433

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=85.17  E-value=9.3  Score=31.56  Aligned_cols=56  Identities=23%  Similarity=0.307  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhH
Q 011839          111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL  167 (476)
Q Consensus       111 ~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es  167 (476)
                      |+..|..|+..++.+.+++++.-.+- +.|..+++.++......=..+.+|+.+++.
T Consensus         3 Lea~~~~Lr~rLd~~~rk~~~~~~~~-k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~   58 (69)
T PF14197_consen    3 LEAEIATLRNRLDSLTRKNSVHEIEN-KRLRRERDSAERQLGDAYEENNKLKEENEA   58 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555556666666666654433333 555555555555555555555555554443

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=84.83  E-value=8.7  Score=31.66  Aligned_cols=47  Identities=28%  Similarity=0.361  Sum_probs=33.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011839          243 AGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES  289 (476)
Q Consensus       243 ssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLee  289 (476)
                      ..++.++..|+.++..+..+...|.+.+..-+.+|..+.+++..++.
T Consensus        17 ~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq   63 (65)
T TIGR02449        17 ERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ   63 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            34556666777777777777777777777777777777777766654

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=84.71  E-value=13  Score=42.06  Aligned_cols=12  Identities=25%  Similarity=0.293  Sum_probs=6.1

Q ss_pred             ccccchHHHHHHH
Q 011839           68 AESANLAEAERQH   80 (476)
Q Consensus        68 ~~~~~~~e~~~~~   80 (476)
                      |+.+.|+| ||+.
T Consensus       318 P~~dLsve-EK~~  329 (652)
T COG2433         318 PDRDLSVE-EKQE  329 (652)
T ss_pred             CcccCCHH-HHHH
Confidence            55555555 3444

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=84.51  E-value=49  Score=38.56  Aligned_cols=41  Identities=17%  Similarity=0.367  Sum_probs=19.2

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          241 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR  281 (476)
Q Consensus       241 ~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLq  281 (476)
                      .+..|.++..++..++..+...++.+-..+..|+..++.|.
T Consensus       217 ~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~  257 (916)
T KOG0249|consen  217 DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR  257 (916)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444443

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=84.06  E-value=91  Score=36.24  Aligned_cols=37  Identities=22%  Similarity=0.415  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011839          188 FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL  224 (476)
Q Consensus       188 ~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L  224 (476)
                      .|..+-..|...+.+|.+..+.|-.-..-|.-+++.|
T Consensus       239 ~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSL  275 (739)
T PF07111_consen  239 AWEPEREELLETVQHLQEDRDALQATAELLQVRVQSL  275 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4666767777777777777777766666666666655

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=83.68  E-value=5.3  Score=37.19  Aligned_cols=24  Identities=29%  Similarity=0.398  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhh
Q 011839          266 LLQENRQLKENVSSLRSQLSSDES  289 (476)
Q Consensus       266 LeeEIq~LkeqIseLqs~lqeLee  289 (476)
                      +...|.+|...+..+..++..|..
T Consensus       114 l~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen  114 LREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444444444444444444444

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>KOG1103 consensus Predicted coiled-coil protein [Function unknown]

Probab=83.58  E-value=50  Score=35.67  Aligned_cols=45  Identities=24%  Similarity=0.429  Sum_probs=29.9

Q ss_pred             HHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 011839           92 ETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEET  136 (476)
Q Consensus        92 eti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEk  136 (476)
                      .-|+.|..+.+.|+|--+-=......|+.+-..+++.++--..++
T Consensus       118 Kli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~  162 (561)
T KOG1103|consen  118 KLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEK  162 (561)
T ss_pred             HHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357789999999999876555555556665555555555444443

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=83.43  E-value=27  Score=31.40  Aligned_cols=45  Identities=22%  Similarity=0.271  Sum_probs=23.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011839          244 GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE  288 (476)
Q Consensus       244 sL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLe  288 (476)
                      .+...+.-|...+..|+..+..+...+..++.++..+...++.+.
T Consensus        91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~  135 (140)
T PRK03947         91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ  135 (140)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555555555555555555555555555555555443

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=83.32  E-value=58  Score=33.43  Aligned_cols=52  Identities=17%  Similarity=0.285  Sum_probs=37.4

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 011839          241 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL  292 (476)
Q Consensus       241 ~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~  292 (476)
                      .+..+--.+..+..++..-...++.+.++|..|+..+..|+.+..+...-++
T Consensus       180 ~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~iF  231 (258)
T PF15397_consen  180 ALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPREVIF  231 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhh
Confidence            3333445566777778888888888888888888888888777776666554

>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]

Probab=83.27  E-value=5.5  Score=38.75  Aligned_cols=63  Identities=16%  Similarity=0.208  Sum_probs=43.1

Q ss_pred             hhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011839          229 DSWTQMES-VSKETIAGLSVDITQLRMQVVELEESR--NNLLQENRQLKENVSSLRSQLSSDESKK  291 (476)
Q Consensus       229 D~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~--s~LeeEIq~LkeqIseLqs~lqeLeeei  291 (476)
                      +.-|..+| .+++.+.++.+++..+..+|..|.+-+  ..+.++|++|+..+...+.+|.+++.-.
T Consensus        81 l~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~  146 (201)
T KOG4603|consen   81 LQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGT  146 (201)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44455666 666677777777777777777777743  4577777777777777777777777544

>PF15450 DUF4631: Domain of unknown function (DUF4631)

Probab=83.12  E-value=85  Score=35.23  Aligned_cols=106  Identities=14%  Similarity=0.269  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          197 EQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKE  275 (476)
Q Consensus       197 epeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~Lke  275 (476)
                      ...+..+.+...++.+.+.++..+....+++=|.-+-.|- .....|..++++++.+..++..+...--+  ..|.+.+.
T Consensus       411 ~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa~lLssvQ~~~e~~~~--rkiaeiqg  488 (531)
T PF15450_consen  411 EKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDTEGKAREREVGAVRQELATLLSSVQLLKEDNPG--RKIAEIQG  488 (531)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh--hhHHHHHH
Confidence            3444455555556666666666666666777777666666 67777777777777777777777665444  22444444


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhcccchhhhHH
Q 011839          276 NVSSLRSQLSSDESKKLQHATSEQKDFSTQI  306 (476)
Q Consensus       276 qIseLqs~lqeLeeei~~~~~~~~e~~~~qi  306 (476)
                      ++.  ..+|-+|++.+.-.-+.-+-.|++.+
T Consensus       489 ~l~--~~qi~kle~siq~nKtiqn~kfntEt  517 (531)
T PF15450_consen  489 KLA--TNQIMKLENSIQTNKTIQNLKFNTET  517 (531)
T ss_pred             HHH--HHHHHHHHHHHHHHHHHHhcccchHH
Confidence            444  56666666666433333333444333

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=83.00  E-value=35  Score=30.75  Aligned_cols=43  Identities=26%  Similarity=0.271  Sum_probs=19.1

Q ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          238 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL  280 (476)
Q Consensus       238 Lke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseL  280 (476)
                      +.+-+.-++..+..|...+..+...+..+...++.+...+..+
T Consensus        92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l  134 (140)
T PRK03947         92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQL  134 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444444433

>PF13166 AAA_13: AAA domain

Probab=82.99  E-value=86  Score=35.15  Aligned_cols=38  Identities=21%  Similarity=0.350  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011839          254 MQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK  291 (476)
Q Consensus       254 ~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei  291 (476)
                      .++..++..+..+...+..+...+..+...+..++...
T Consensus       417 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~  454 (712)
T PF13166_consen  417 KEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQL  454 (712)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444444444444444433

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=82.92  E-value=44  Score=31.82  Aligned_cols=94  Identities=21%  Similarity=0.311  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHH
Q 011839          185 EKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESR  263 (476)
Q Consensus       185 EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~  263 (476)
                      +.....+++..++.++...-.+.+.|.......-.+|...-..-+.+...+| .--+.-..+...+..++.+...|...+
T Consensus        28 E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rR  107 (159)
T PF05384_consen   28 EYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERR  107 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444444444444333333333333344445666 666666677777777777777777777


Q ss_pred             HHHHHHHHHHHHHHH
Q 011839          264 NNLLQENRQLKENVS  278 (476)
Q Consensus       264 s~LeeEIq~LkeqIs  278 (476)
                      +.|+.....+...|.
T Consensus       108 D~LErrl~~l~~tie  122 (159)
T PF05384_consen  108 DELERRLRNLEETIE  122 (159)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            766666666655554

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=82.81  E-value=60  Score=34.57  Aligned_cols=30  Identities=20%  Similarity=0.179  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          249 ITQLRMQVVELEESRNNLLQENRQLKENVS  278 (476)
Q Consensus       249 i~sLq~QVe~Leee~s~LeeEIq~LkeqIs  278 (476)
                      ...+..-|+.+..+++.+.+++...+.++.
T Consensus       289 y~~~s~~V~~~t~~L~~IseeLe~vK~eme  318 (359)
T PF10498_consen  289 YKQASEGVSERTRELAEISEELEQVKQEME  318 (359)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]

Probab=82.79  E-value=93  Score=35.40  Aligned_cols=25  Identities=24%  Similarity=0.361  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhh
Q 011839           77 ERQHLLQREAMAILEETVKHLRNER  101 (476)
Q Consensus        77 ~~~~~~q~e~~~~~eeti~~l~~e~  101 (476)
                      .|.+..+++.....-+++++|.++.
T Consensus       347 ~r~~e~~kd~~~~~~~~~~~~~~sl  371 (607)
T KOG0240|consen  347 KRKLEKKKDKNVALKEELEKLRNSL  371 (607)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            5555666666666666666666553

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=82.72  E-value=18  Score=41.04  Aligned_cols=18  Identities=28%  Similarity=0.351  Sum_probs=7.5

Q ss_pred             ceeeccCCCccchhhhhh
Q 011839          413 EIVQIPLDDKEVQDLELQ  430 (476)
Q Consensus       413 eiv~~~ld~~~~~~~~~q  430 (476)
                      +|=-+|-+|-+|--++-+
T Consensus       590 ~iPv~~~~dV~i~~ld~~  607 (652)
T COG2433         590 EIPVLPEGDVQIIRLDEF  607 (652)
T ss_pred             CCceeecCceEEEEecce
Confidence            333344444444444333

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=82.55  E-value=84  Score=34.71  Aligned_cols=22  Identities=23%  Similarity=0.430  Sum_probs=14.9

Q ss_pred             CceeecCCCCCCCCCccCCccc
Q 011839           24 DDVAVGADPNHLINGQKDDVRS   45 (476)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~   45 (476)
                      .+++|+....|+..++..++..
T Consensus       105 ~~~svg~es~hn~se~~tD~et  126 (502)
T KOG0982|consen  105 SNISVGKESMHNLSEQLTDNET  126 (502)
T ss_pred             cccccccccccccccCCCCCcc
Confidence            4677777777777777666543

>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore

Probab=82.41  E-value=33  Score=29.92  Aligned_cols=52  Identities=25%  Similarity=0.325  Sum_probs=40.5

Q ss_pred             hHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011839          166 DLHIQREGGLEMNIANLQSEKE-FWLQKEAALEQKISQLRDESAALNMKRASL  217 (476)
Q Consensus       166 es~~Qkea~LEeqIkqLe~EIs-~~~qEla~LepeiekL~~EeasLkQKLasL  217 (476)
                      +.|.+..+.++.+++-|+.... .|..++..|..++..|..++..|+.++..-
T Consensus        23 eLh~~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e   75 (87)
T PF12709_consen   23 ELHALYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTE   75 (87)
T ss_pred             HHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4577888888999998887776 677777888888888888887777766644

Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].

>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]

Probab=82.01  E-value=57  Score=35.81  Aligned_cols=57  Identities=23%  Similarity=0.266  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhh
Q 011839          179 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME  235 (476)
Q Consensus       179 IkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkE  235 (476)
                      ..++..+......++..+..+++.+..++..+...|..++.+-.+|-.+.+.+.+.-
T Consensus       178 ~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey  234 (447)
T KOG2751|consen  178 EEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREY  234 (447)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555666667777777777777777777777777776655555544333

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=81.44  E-value=42  Score=30.54  Aligned_cols=17  Identities=18%  Similarity=0.376  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 011839          113 GTVQQLQNECDLYKEKV  129 (476)
Q Consensus       113 k~IkqLqeEi~~lkqkL  129 (476)
                      -.|++++-|+..++..+
T Consensus        23 s~lr~~E~E~~~l~~el   39 (120)
T PF12325_consen   23 SQLRRLEGELASLQEEL   39 (120)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34444444444444443

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family

Probab=81.24  E-value=36  Score=35.20  Aligned_cols=78  Identities=18%  Similarity=0.228  Sum_probs=43.9

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh-------hhcccchhhhHHHHHHhHH
Q 011839          241 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH-------ATSEQKDFSTQIEAAGALI  313 (476)
Q Consensus       241 ~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~-------~~~~~e~~~~qie~a~~~v  313 (476)
                      .++.++.++..++.++..+......-.-.+..++.++..++.++......+...       ...+.+.|..+.+.|..+.
T Consensus       215 ~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y  294 (362)
T TIGR01010       215 LISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQL  294 (362)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444443222224455666666666666666655554322       1226677888888888888


Q ss_pred             HHHHH
Q 011839          314 DKLIT  318 (476)
Q Consensus       314 ~kl~~  318 (476)
                      +.++.
T Consensus       295 ~~~l~  299 (362)
T TIGR01010       295 KAALT  299 (362)
T ss_pred             HHHHH
Confidence            87777

This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.

>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

Probab=81.13  E-value=40  Score=38.38  Aligned_cols=124  Identities=16%  Similarity=0.105  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHH
Q 011839          181 NLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELE  260 (476)
Q Consensus       181 qLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Le  260 (476)
                      +++..+.....+++.++.++..       ...+...|+.....|...|+.|+..|+.-=-.+..++-   .|...+...-
T Consensus       375 ~~~~~~~~~~~~l~~le~~l~~-------~~~~~~~L~~~~~~l~~~r~dW~laEae~Ll~lA~q~L---~l~~dv~~A~  444 (656)
T PRK06975        375 QAQASVHQLDSQFAQLDGKLAD-------AQSAQQALEQQYQDLSRNRDDWMIAEVEQMLSSASQQL---QLTGNVQLAL  444 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHH---HHhCCHHHHH
Confidence            3333344444444444444444       34444555555666677889999999833333333221   2222333222


Q ss_pred             HHHHHHHHHHHHHHHHHH--HHHHhhhhhhhhh---hhhhhcccchhhhHHHHHHhHHHHHHH
Q 011839          261 ESRNNLLQENRQLKENVS--SLRSQLSSDESKK---LQHATSEQKDFSTQIEAAGALIDKLIT  318 (476)
Q Consensus       261 ee~s~LeeEIq~LkeqIs--eLqs~lqeLeeei---~~~~~~~~e~~~~qie~a~~~v~kl~~  318 (476)
                      .-+.+.+    .....++  .+-.-++.|...+   ......+...+-.+++++..-|+.|--
T Consensus       445 ~~L~~AD----~~La~~~~P~l~~lR~Ala~Di~~L~~~~~~D~~gl~l~L~~l~~~vd~Lpl  503 (656)
T PRK06975        445 IALQNAD----ARLATSDSPQAVAVRKAIAQDIERLKAAPSADLTGLAIKLDDAIAKIDALPL  503 (656)
T ss_pred             HHHHHHH----HHHHhcCCcchHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHhhCcC
Confidence            2222222    2222222  1222222222222   112223666777778888888888765

>PRK12704 phosphodiesterase; Provisional

Probab=81.11  E-value=97  Score=34.50  Aligned_cols=10  Identities=30%  Similarity=0.494  Sum_probs=4.9

Q ss_pred             HHhHHHHHHH
Q 011839          309 AGALIDKLIT  318 (476)
Q Consensus       309 a~~~v~kl~~  318 (476)
                      |.-.+++|+.
T Consensus       266 a~~~l~~l~~  275 (520)
T PRK12704        266 ARLALEKLVQ  275 (520)
T ss_pred             HHHHHHHHHh
Confidence            4445555543

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=81.09  E-value=1.5e+02  Score=36.73  Aligned_cols=114  Identities=20%  Similarity=0.258  Sum_probs=73.3

Q ss_pred             HHHHHHHhhhhhhh---hhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011839           90 LEETVKHLRNERES---HIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND  166 (476)
Q Consensus        90 ~eeti~~l~~e~d~---~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~e  166 (476)
                      .+-+|--+.-+-++   .|+...=+...-+.++.+...+...++.+..+.|     +....+...-.+-.+.+.+.....
T Consensus       800 ~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~-----~~~~~i~~l~~~~~e~k~~~~~~~  874 (1294)
T KOG0962|consen  800 REKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVI-----EQEREISRLINLRNELKEEKQKIE  874 (1294)
T ss_pred             HHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555554   4677666777777888888888887766555553     334444455555566666777777


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          167 LHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESA  208 (476)
Q Consensus       167 s~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~Eea  208 (476)
                      ...+....+++.+..|+..+....+++..+.+.+.-+.....
T Consensus       875 ~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~  916 (1294)
T KOG0962|consen  875 RSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELE  916 (1294)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHH
Confidence            777777788888888888887666666666555554444433

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=81.04  E-value=73  Score=33.05  Aligned_cols=87  Identities=25%  Similarity=0.242  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHH---HH
Q 011839          190 LQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRN---NL  266 (476)
Q Consensus       190 ~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s---~L  266 (476)
                      -+.++.|+-++.+++....++..-+..||..=..|...+-.   ...++...-+.|++.|.    ....|++++.   .+
T Consensus        90 y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRa---ti~sleDfeqrLnqAIE----rnAfLESELdEke~l  162 (333)
T KOG1853|consen   90 YQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRA---TIYSLEDFEQRLNQAIE----RNAFLESELDEKEVL  162 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhh---hhhhHHHHHHHHHHHHH----HHHHHHHHhhHHHHH
Confidence            34445555555556666655555555555555555222222   23366666566655554    3445555443   35


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 011839          267 LQENRQLKENVSSLRSQ  283 (476)
Q Consensus       267 eeEIq~LkeqIseLqs~  283 (476)
                      .++++-|++..-.|+..
T Consensus       163 lesvqRLkdEardlrqe  179 (333)
T KOG1853|consen  163 LESVQRLKDEARDLRQE  179 (333)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            56666666655555433

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.87  E-value=1.1e+02  Score=34.86  Aligned_cols=60  Identities=8%  Similarity=0.074  Sum_probs=44.3

Q ss_pred             HHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          150 KEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAA  209 (476)
Q Consensus       150 k~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~Eeas  209 (476)
                      ..+..+..+++|++.-.+....-..+..+|+.|+-.+.+...+...|..++.+.++....
T Consensus       353 ~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~dd  412 (654)
T KOG4809|consen  353 ELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDD  412 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence            344556667777776666666666777888888888888888888888888888776643

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=80.59  E-value=54  Score=31.25  Aligned_cols=41  Identities=20%  Similarity=0.351  Sum_probs=19.6

Q ss_pred             HHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Q 011839           89 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKV  129 (476)
Q Consensus        89 ~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkL  129 (476)
                      |+..||.-+.+=.+--..----....+..|+.++..++..+
T Consensus         3 Ii~~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v   43 (159)
T PF05384_consen    3 IIKKTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEV   43 (159)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666554443322222223344555555555555554

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PRK11519 tyrosine kinase; Provisional

Probab=80.07  E-value=1.2e+02  Score=34.82  Aligned_cols=34  Identities=15%  Similarity=0.188  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhH
Q 011839          134 EETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL  167 (476)
Q Consensus       134 qEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es  167 (476)
                      ...+.-|+.+...+-++....|..+.+|+.++..
T Consensus       266 ~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~  299 (719)
T PRK11519        266 SKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDS  299 (719)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3444667777777777888888888888876654

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=80.01  E-value=51  Score=35.08  Aligned_cols=62  Identities=15%  Similarity=0.154  Sum_probs=47.9

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 011839          169 IQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS  230 (476)
Q Consensus       169 ~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~  230 (476)
                      ..++..+..++..+-.+......+++.+..+|..+..-...+...|+.+.+++.+.|.+=+.
T Consensus       258 ~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee  319 (359)
T PF10498_consen  258 ESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE  319 (359)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666777777777888888888888888888888888888888888888877655444

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	476
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-16
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-16
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
3ghg_C	411	Fibrinogen gamma chain; triple-stranded coiled coi	9e-07
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	5e-04
2xs1_A	704	Programmed cell death 6-interacting protein; prote	5e-04
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	6e-04
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	8e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 81.8 bits (202), Expect = 1e-16
 Identities = 54/277 (19%), Positives = 112/277 (40%), Gaps = 23/277 (8%)

Query: 68   AESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKE 127
            AE+   AEAE   +        LEE +  +    E   ++   L+   +++Q +    +E
Sbjct: 903  AETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEE 962

Query: 128  KVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE 187
            +++   E   Q+LQ +      K   +E+ I  + +QN+   +    LE  +++L +   
Sbjct: 963  QLEE-EEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNL- 1020

Query: 188  FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSV 247
                  A  E+K   L           + LE RLK  E  +          ++    L  
Sbjct: 1021 ------AEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQEL-------EKIKRKLEG 1067

Query: 248  DITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQI- 306
            + + L  Q+ EL+     L  +  + +E + +  ++L  DE+ +  +A  + ++  + I 
Sbjct: 1068 ESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLE-DETSQKNNALKKIRELESHIS 1126

Query: 307  ------EAAGALIDKLITENIELVEKVNDLSVKLDRQ 337
                  E+  A  +K   +  +L E++  L  +L+  
Sbjct: 1127 DLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDT 1163

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 81.4 bits (201), Expect = 2e-16
 Identities = 52/278 (18%), Positives = 115/278 (41%), Gaps = 18/278 (6%)

Query: 73   LAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQ-- 130
            +   + +    +E     E  +K L  +     +++  L+   ++LQ E +LY E  +  
Sbjct: 859  MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ---EKLQAETELYAEAEEMR 915

Query: 131  -------ATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQ 183
                     LEE + +++ + +   ++   L+   K+++ Q     ++    E     LQ
Sbjct: 916  VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQ 975

Query: 184  SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIA 243
             EK     K   +E  I  + D++  L  +R  LEER+  L  +     +      +   
Sbjct: 976  LEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKN 1035

Query: 244  GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK------KLQHATS 297
                 I++L +++ + E+SR  L +  R+L+   S L  Q++  +++      +L     
Sbjct: 1036 KHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEE 1095

Query: 298  EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLD 335
            E +    ++E   +  +  + +  EL   ++DL   L+
Sbjct: 1096 ELQAALARLEDETSQKNNALKKIRELESHISDLQEDLE 1133

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 61.0 bits (148), Expect = 5e-10
 Identities = 59/313 (18%), Positives = 114/313 (36%), Gaps = 31/313 (9%)

Query: 83   QREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQR 142
            Q E M   +E ++  +  ++    +   LE    QL  E +L +EK+QA  E   +  + 
Sbjct: 855  QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEM 914

Query: 143  QNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQ 202
            +  L  +K   LEE + ++  + +         E     LQ+EK+        ++Q++  
Sbjct: 915  RVRLAAKK-QELEEILHEMEARIEE-------EEERSQQLQAEKK-------KMQQQMLD 959

Query: 203  LRDESAALNMKRASLEE-------RLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQ 255
            L ++       R  L+        ++K +E D        +   +    L   ++ L   
Sbjct: 960  LEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTN 1019

Query: 256  VVELEESRNNLLQENRQLKENVSSLRSQLSSDES------KKLQHATSEQKDFSTQIEAA 309
            + E EE   NL +   + +  +S L  +L  +E       K  +    E  D   QI   
Sbjct: 1020 LAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAEL 1079

Query: 310  GALIDKLITENIELVEKVNDLSVKLDR-QSVAAGLSSAIGS--DAVTALTSDTEPMSESS 366
             A I +L  +  +  E++     +L+   S        I      ++ L  D E    + 
Sbjct: 1080 QAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAAR 1139

Query: 367  DNMSSLNNRLETQ 379
            +        L  +
Sbjct: 1140 NKAEKQKRDLSEE 1152

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 57.9 bits (140), Expect = 5e-09
 Identities = 49/306 (16%), Positives = 104/306 (33%), Gaps = 38/306 (12%)

Query: 83   QREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQR 142
            Q E++  ++    ++R+           L   +  L       +E +QA  EE  +  +R
Sbjct: 817  QLESIFCIQ---YNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEE-MQAKDEELQRTKER 872

Query: 143  QNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKE---AALEQK 199
            Q     + +   ++  +    +N L  +           LQ+E E + + E     L  K
Sbjct: 873  QQKAEAELKELEQKHTQLCEEKNLLQEK-----------LQAETELYAEAEEMRVRLAAK 921

Query: 200  ISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVEL 259
              +L +    +  +    EER + L+A+K    Q               +  L  Q+ E 
Sbjct: 922  KQELEEILHEMEARIEEEEERSQQLQAEKKKMQQ--------------QMLDLEEQLEEE 967

Query: 260  EESRNNLLQENRQLKENVSSLRSQLSSDE------SKKLQHATSEQKDFSTQIEAAGALI 313
            E +R  L  E       +  +   +   E      +K+ +       D +T +       
Sbjct: 968  EAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKA 1027

Query: 314  DKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLN 373
              L     +    +++L V+L ++  +      I        +   E ++E    ++ L 
Sbjct: 1028 KNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELK 1087

Query: 374  NRLETQ 379
             +L  +
Sbjct: 1088 AQLAKK 1093

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 54.5 bits (131), Expect = 5e-08
 Identities = 28/215 (13%), Positives = 76/215 (35%), Gaps = 13/215 (6%)

Query: 69   ESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEK 128
            E A   + + + +     +  +E+ +  + ++     ++   LE  V  L       +EK
Sbjct: 967  EEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEK 1026

Query: 129  VQ-------------ATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGL 175
             +             + LE  +++ ++      + +  LE     L  Q      +   L
Sbjct: 1027 AKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAEL 1086

Query: 176  EMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME 235
            +  +A  + E +  L +      + +    +   L    + L+E L+  +A ++   + +
Sbjct: 1087 KAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQK 1146

Query: 236  SVSKETIAGLSVDITQLRMQVVELEESRNNLLQEN 270
                E +  L  ++          +E R +  +++
Sbjct: 1147 RDLSEELEALKTELEDTLDTTATQQELRGSDYKDD 1181

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 41/219 (18%), Positives = 81/219 (36%), Gaps = 22/219 (10%)

Query: 140  LQRQNDLRMQKEATLEETI-KQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA---- 194
            L R+   + Q++      I   +R+  ++       L   I  L        + +A    
Sbjct: 806  LARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEE 865

Query: 195  --ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQL 252
                +++  +   E   L  K   L E   LL+    + T++ + ++E    L+    +L
Sbjct: 866  LQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQEL 925

Query: 253  RMQVVEL-------EESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQ 305
               + E+       EE    L  E +++++ +  L  QL  +E    Q    E+     +
Sbjct: 926  EEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQL-EEEEAARQKLQLEKVTADGK 984

Query: 306  IEAAGA-------LIDKLITENIELVEKVNDLSVKLDRQ 337
            I+             +KL  E   L E+V+DL+  L  +
Sbjct: 985  IKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEE 1023

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 37/222 (16%), Positives = 89/222 (40%), Gaps = 15/222 (6%)

Query: 69   ESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEK 128
            +      A   +    +A+  L+   + +  +RE    K      +V++         +K
Sbjct: 872  KHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIE--ARSVERY--------KK 921

Query: 129  VQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 188
            +   LE  I QLQR+ D + ++  +L E +  L        ++       +   + E + 
Sbjct: 922  LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKN 981

Query: 189  WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVD 248
               +  +L+++I++LR E      ++ ++EE     + + +   Q+ S  KE    L  +
Sbjct: 982  ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE---QLVSELKEQNTLLKTE 1038

Query: 249  ITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK 290
              +L  ++ +  +     ++  ++L E    L   L+ +  +
Sbjct: 1039 KEELNRRIHDQAKEITETME--KKLVEETKQLELDLNDERLR 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 44/275 (16%), Positives = 94/275 (34%), Gaps = 22/275 (8%)

Query: 78   RQHLLQREAMAILEETVKHLRNERESH---IQKEATLEGTVQQLQNECDLYKEKVQATLE 134
                L+R   AI+ +  + +   R+ +         L+  ++             +    
Sbjct: 809  YATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHK-S 867

Query: 135  ETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA 194
              IQ+  R    R+    TL+  +        +  +RE      +       E + +   
Sbjct: 868  IIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRE---LKKLKIEARSVERYKKLHI 924

Query: 195  ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWT--------------QMESVSKE 240
             LE KI QL+ +    N +  SL E++  LE    + T              +    +  
Sbjct: 925  GLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATN 984

Query: 241  TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK-KLQHATSEQ 299
             +  L  +I +LR ++ + +  +  + +   + K     L S+L    +  K +     +
Sbjct: 985  RVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNR 1044

Query: 300  KDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL 334
            +      E    +  KL+ E  +L   +ND  ++ 
Sbjct: 1045 RIHDQAKEITETMEKKLVEETKQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 26/182 (14%), Positives = 67/182 (36%), Gaps = 29/182 (15%)

Query: 75   EAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLE 134
            E +   L ++  +    +  K L  +                 L+       EK+++   
Sbjct: 927  ENKIMQLQRK--IDEQNKEYKSLLEKM--------------NNLEITYSTETEKLRS-DV 969

Query: 135  ETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA 194
            E ++  + +      +  +L+E I +LR +           +     ++   +   + + 
Sbjct: 970  ERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQ-------TQTEKKTIEEWAD---KYKH 1019

Query: 195  ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRM 254
              EQ +S+L++++  L  ++  L    ++ +  K+    ME    E    L +D+   R+
Sbjct: 1020 ETEQLVSELKEQNTLLKTEKEELNR--RIHDQAKEITETMEKKLVEETKQLELDLNDERL 1077

Query: 255  QV 256
            + 
Sbjct: 1078 RY 1079

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 3e-11
 Identities = 69/470 (14%), Positives = 157/470 (33%), Gaps = 136/470 (28%)

Query: 52  DIQNVQVDADRHQSNGAESANLAEAERQHLLQR----EAMAILEETVKHLRNERESHIQK 107
           D ++VQ D  +        + L++ E  H++           L  T   L +++E  +QK
Sbjct: 34  DCKDVQ-DMPK--------SILSKEEIDHIIMSKDAVSGTLRLFWT---LLSKQEEMVQK 81

Query: 108 --EATLEGT----VQQLQNEC-------DLYKEKVQATLEETIQQLQRQNDLRMQKEATL 154
             E  L       +  ++ E         +Y E+    L    Q   + N  R+Q    L
Sbjct: 82  FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVFAKYNVSRLQPYLKL 140

Query: 155 EETIKQLRNQNDLHIQREGG-----LEMNIAN---LQSEKE---FWL------QKEAALE 197
            + + +LR   ++ I    G     + +++     +Q + +   FWL        E  LE
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 198 Q----------KISQLRDESAALNMKRASLEERLKLLEADK----------DSWTQMESV 237
                        +   D S+ + ++  S++  L+ L   K          +        
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ------ 254

Query: 238 SKETIAGLSVDITQLRMQVVELEESRN----NLLQENRQLKENVSSLRSQLSSDESKKL- 292
           + +     + ++   ++ +     +R     + L        ++      L+ DE K L 
Sbjct: 255 NAKAWN--AFNL-SCKILLT----TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 293 -QHATSEQKDFSTQIEAAGALIDKLITE---------------NIELVEKVNDLSVK-LD 335
            ++     +D   ++         +I E               N + +  + + S+  L+
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 336 ----RQS-VAAGL---SSAIGSDAVTALTSDTEPMSESSDNMSSLNNR--LETQGVVAVK 385
               R+      +   S+ I +  ++ +  D    S+    ++ L+    +E Q     K
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-SDVMVVVNKLHKYSLVEKQP----K 422

Query: 386 EDRNGINGVHADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESY 435
           E    I  ++ +                 +++ L+++    L   +V+ Y
Sbjct: 423 ESTISIPSIYLE-----------------LKVKLENE--YALHRSIVDHY 453

>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C Length = 411

 Score = 49.9 bits (119), Expect = 9e-07
 Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 7/132 (5%)

Query: 174 GLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEAD----KD 229
           G+   ++  Q++ +  LQ    LE  + Q+ ++++ +     +++      E+      D
Sbjct: 24  GIADFLSTYQTKVDKDLQS---LEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMID 80

Query: 230 SWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES 289
           + T       E I      I      +  L+E  N+  Q+   LKE V+ L +Q      
Sbjct: 81  AATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCK 140

Query: 290 KKLQHATSEQKD 301
             +Q      KD
Sbjct: 141 DTVQIHDITGKD 152

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.1 bits (93), Expect = 5e-04
 Identities = 15/75 (20%), Positives = 37/75 (49%), Gaps = 8/75 (10%)

Query: 130 QATLE-ETIQQLQRQNDLRMQ-KEATLEETIKQLRNQ-----NDLHIQREGGLEMNIA-N 181
           + T E E+I++ + +   R+Q  +A  +   ++ R +      + + ++   +E N   N
Sbjct: 79  RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 138

Query: 182 LQSEKEFWLQKEAAL 196
             ++K F+ Q +A +
Sbjct: 139 RIADKAFYQQPDADI 153

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score = 41.9 bits (97), Expect = 5e-04
 Identities = 27/272 (9%), Positives = 78/272 (28%), Gaps = 7/272 (2%)

Query: 70  SANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKV 129
            +  A  +R+  L   ++A + E          S     A  + +   +          V
Sbjct: 371 QSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSV 430

Query: 130 --QATLEETIQQLQRQNDLRMQKEATLEETIKQLRN--QNDLHIQREGGLEMNIANLQSE 185
             Q  ++   Q ++   +L  +    L+E+++ L      D  ++ +             
Sbjct: 431 IEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNEL 490

Query: 186 KEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW-TQMESVSKETIAG 244
            +    +       + +       +     S  + + LL   +      + S +      
Sbjct: 491 YKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQ 550

Query: 245 LSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS--DESKKLQHATSEQKDF 302
            S  +  L+  +  L+E +         LK     + S+  +   +   +        + 
Sbjct: 551 GSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTEL 610

Query: 303 STQIEAAGALIDKLITENIELVEKVNDLSVKL 334
                     + + + +   L++ +     + 
Sbjct: 611 DRVYGGLTTKVQESLKKQEGLLKNIQVSHQEF 642

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B* Length = 464

 Score = 41.2 bits (96), Expect = 6e-04
 Identities = 15/109 (13%), Positives = 41/109 (37%), Gaps = 5/109 (4%)

Query: 77  ERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEET 136
            +Q    +  +  L++ V    +   +  Q    ++  + + Q +    ++     L E 
Sbjct: 92  LKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQ----RKDNDIILSEY 147

Query: 137 IQQLQ-RQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQS 184
             +++   N ++   +  +  +++ LR   D   ++   LE  IA    
Sbjct: 148 NTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIATQTD 196

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B* Length = 464

 Score = 40.8 bits (95), Expect = 8e-04
 Identities = 13/111 (11%), Positives = 38/111 (34%), Gaps = 3/111 (2%)

Query: 95  KHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATL 154
             L  + ++       L+  V +  +      + V   ++  + + Q+Q        +  
Sbjct: 89  TTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNM-IDNKLVKTQKQRKDNDIILSEY 147

Query: 155 EETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRD 205
              ++   N    ++     +  ++  L++  +   +K   LE  I+   D
Sbjct: 148 NTEMELHYNYIKDNLDNN--IPSSLRVLRAVIDSLHKKIQKLENAIATQTD 196

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	476
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.95
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.88
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.37
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.27
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.36
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	97.27
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.25
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.21
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.18
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	96.62
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.48
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.47
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	96.47
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.39
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.38
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	95.93
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	95.31
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	94.85
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	94.64
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	94.46
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	94.31
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	93.96
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	93.78
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	93.56
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	93.4
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	92.89
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	92.28
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	91.86
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	91.84
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	91.72
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	91.22
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	91.17
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	91.06
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	91.02
3bas_A	89	Myosin heavy chain, striated muscle/general contro	90.54
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	89.82
3bas_A	89	Myosin heavy chain, striated muscle/general contro	89.64
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	89.33
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	88.52
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	88.22
1m1j_C	409	Fibrinogen gamma chain; coiled coils, disulfide ri	87.63
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	87.13
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	86.96
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	86.34
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	86.27
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	85.98
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	85.49
1z2t_A	26	Anchor peptide Ser65-Leu87 of ALMGS; lipid binding	85.24
3trt_A	77	Vimentin; cytoskeleton, intermediate filament, alp	85.06
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	85.0
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	84.79
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	84.48
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	84.48
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	83.84
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	82.57
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	82.33
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	82.28
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	82.24
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	82.08
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	81.8
1gk4_A	84	Vimentin; intermediate filament, dimer, parallel c	81.41
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	81.32

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.95  E-value=1.6e-05  Score=72.09  Aligned_cols=127  Identities=12%  Similarity=0.129  Sum_probs=52.0

Q ss_pred             HHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHH
Q 011839           90 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI  169 (476)
Q Consensus        90 ~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~  169 (476)
                      +...+..|..+....-..-.-++..+..+..++..+...+..+ ...+..++.+...+......++..+..+........
T Consensus        18 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (284)
T 1c1g_A           18 ALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY-SEALKDAQEKLELAEKKATDAEADVASLNRRIQLFE   96 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333433333333333334444444444444444443322 222244444444444444444444444444444444


Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011839          170 QREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL  217 (476)
Q Consensus       170 Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasL  217 (476)
                      .....+...+..+...+.....++..+...+..+......+...+..+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  144 (284)
T 1c1g_A           97 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQ  144 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            444444444444444444443344444333333333333333333333

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.88  E-value=1.9e-05  Score=71.53  Aligned_cols=15  Identities=33%  Similarity=0.248  Sum_probs=5.6

Q ss_pred             hHHHHHHhHHHHHHH
Q 011839          304 TQIEAAGALIDKLIT  318 (476)
Q Consensus       304 ~qie~a~~~v~kl~~  318 (476)
                      .++..+..-+..+..
T Consensus       237 ~~~~~~~~~~~~~~~  251 (284)
T 1c1g_A          237 TRAEFAERSVTKLEK  251 (284)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.37  E-value=6.6e-07  Score=102.65  Aligned_cols=113  Identities=18%  Similarity=0.150  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHH
Q 011839          112 EGTVQQLQNECDLYKEKVQAT------LEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSE  185 (476)
Q Consensus       112 Ek~IkqLqeEi~~lkqkLE~l------lqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~E  185 (476)
                      ++.++.|+.++..++..++..      +.+++..|+.+...+..........+.+++........+...+++++..++.+
T Consensus       856 ~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~e  935 (1184)
T 1i84_S          856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEAR  935 (1184)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444443322      22222333333333333333333333333333333333444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011839          186 KEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL  224 (476)
Q Consensus       186 Is~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L  224 (476)
                      +.....++..+..++..+..+...+..++..++..+..|
T Consensus       936 lee~ee~l~el~~e~~~le~el~~L~~eleele~~l~~l  974 (1184)
T 1i84_S          936 IEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKL  974 (1184)
T ss_dssp             HHHHHHC--------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            443333333333333333333333444444433333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.27  E-value=2.2e-06  Score=98.34  Aligned_cols=111  Identities=21%  Similarity=0.188  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHH
Q 011839          111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWL  190 (476)
Q Consensus       111 ~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~  190 (476)
                      ++..+..|+.++..+...++... ..+..++.+...+......++..+.+++............++.++..++.++....
T Consensus       883 le~~l~~Le~e~~~l~~~L~~e~-~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~el~~L~  961 (1184)
T 1i84_S          883 LEQKHTQLCEEKNLLQEKLQAET-ELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLE  961 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444433222 22244444455555555555555555555555444444444444555544444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011839          191 QKEAALEQKISQLRDESAALNMKRASLEERLK  222 (476)
Q Consensus       191 qEla~LepeiekL~~EeasLkQKLasLEeKL~  222 (476)
                      .++..+..++..+..+...+..++..++.++.
T Consensus       962 ~eleele~~l~~l~~e~~~le~~l~~l~~el~  993 (1184)
T 1i84_S          962 EQLEEEEAARQKLQLEKVTADGKIKKMEDDIL  993 (1184)
T ss_dssp             --------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444433333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.36  E-value=0.037  Score=53.30  Aligned_cols=160  Identities=15%  Similarity=0.186  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 011839          115 VQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA  194 (476)
Q Consensus       115 IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla  194 (476)
                      ++.++.+|+.+.+.+..+ ...|..++.+...+-.....+...+.+++..       ...++..|..++..+.....++.
T Consensus        13 LQ~lD~~i~~l~~~~~~l-p~el~~le~~~~~l~~~~~~~~~~l~d~~~~-------~~~~e~~i~~~~~ri~~~~~~l~   84 (256)
T 3na7_A           13 ISHLDKEIDSLEPLIREK-RKDLDKALNDKEAKNKAILNLEEEKLALKLQ-------VSKNEQTLQDTNAKIASIQKKMS   84 (256)
T ss_dssp             HHHHHHHHHHTHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666777666665443 2333444444444444444444444444443       33334444444444444444432


Q ss_pred             HH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          195 AL--EQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQ  272 (476)
Q Consensus       195 ~L--epeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~  272 (476)
                      ..  -.+|..|..+...++.+...++.++..+....+.       ++..+..+...+..+..++..+.   ..+...+..
T Consensus        85 ~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~-------~~~~l~~~~~~l~~~~~~l~~~~---~~~~~~~~e  154 (256)
T 3na7_A           85 EIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKR-------KSEKQEDLKKEMLELEKLALELE---SLVENEVKN  154 (256)
T ss_dssp             HCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence            22  2355555555555555555555555544332222       22233333333333333333322   233334444


Q ss_pred             HHHHHHHHHHhhhhhhhhhh
Q 011839          273 LKENVSSLRSQLSSDESKKL  292 (476)
Q Consensus       273 LkeqIseLqs~lqeLeeei~  292 (476)
                      +...+..+..++..+...+-
T Consensus       155 ~~~e~~~l~~~r~~l~~~i~  174 (256)
T 3na7_A          155 IKETQQIIFKKKEDLVEKTE  174 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHHhcCC
Confidence            44555555555555555553

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=97.27  E-value=0.042  Score=51.10  Aligned_cols=75  Identities=13%  Similarity=0.184  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHH
Q 011839          111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEK  186 (476)
Q Consensus       111 ~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EI  186 (476)
                      +.+.|..|+.++.++..+|+.-.... -.+......+.+..+.+|....+|++......-.+..|+..+..|+...
T Consensus         4 ~neKi~~LekQL~E~n~kLk~EsE~~-~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L   78 (168)
T 3o0z_A            4 ANEKLSQLQKQLEEANDLLRTESDTA-VRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAIL   78 (168)
T ss_dssp             ------CTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666677777777666654444 5555666666666677777777776665554444444444444444433

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.25  E-value=0.05  Score=52.43  Aligned_cols=45  Identities=16%  Similarity=0.138  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011839          178 NIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK  222 (476)
Q Consensus       178 qIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~  222 (476)
                      ++..++..+.....++..+..++.++......+..++...+.++.
T Consensus        40 ~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~   84 (256)
T 3na7_A           40 DKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS   84 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444455555455555555544444

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.21  E-value=0.05  Score=51.40  Aligned_cols=127  Identities=13%  Similarity=0.130  Sum_probs=59.4

Q ss_pred             HHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHH
Q 011839           89 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLH  168 (476)
Q Consensus        89 ~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~  168 (476)
                      ..++-|.+.+..-.-..|.=.-++.....++..    .+.||.-++..|.+++....++..+.+.+...+-.++++....
T Consensus         7 s~~ee~~ywk~~~~~~~q~~~~le~El~EFqes----SrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~   82 (189)
T 2v71_A            7 SLKEETAYWKELSMKYKQSFQEARDELVEFQEG----SRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQ   82 (189)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555554444444433344443333333    3334444444555555555555555555555555555543222


Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011839          169 IQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK  222 (476)
Q Consensus       169 ~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~  222 (476)
                      .   ..+...+..|+.++.........+...+..|.-.|+.|..+..-+...+.
T Consensus        83 ~---~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~Sle  133 (189)
T 2v71_A           83 Y---AQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLE  133 (189)
T ss_dssp             H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHH
Confidence            2   22233455555555554444455555555555555554444443333333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.18  E-value=0.019  Score=54.23  Aligned_cols=25  Identities=20%  Similarity=0.129  Sum_probs=11.8

Q ss_pred             hhhHhhHHHHHHHHHHHHHHHHHHH
Q 011839          105 IQKEATLEGTVQQLQNECDLYKEKV  129 (476)
Q Consensus       105 ~~~e~~~Ek~IkqLqeEi~~lkqkL  129 (476)
                      -+-|+-||+.|.+++..+..+..++
T Consensus        41 rELE~ELE~eL~~~Ek~~~~L~~~~   65 (189)
T 2v71_A           41 RELEAELEAQLVQAEQRNRDLQADN   65 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444443

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=96.62  E-value=0.24  Score=46.04  Aligned_cols=130  Identities=13%  Similarity=0.163  Sum_probs=76.2

Q ss_pred             HhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhH
Q 011839          152 ATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW  231 (476)
Q Consensus       152 A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~W  231 (476)
                      ..+|-.+.++..........-+.+-..-..+...+....+....|...+..|.+....|.+.+..|.+.+.   .||..|
T Consensus         9 ~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~---qEr~~r   85 (168)
T 3o0z_A            9 SQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILE---AERRDR   85 (168)
T ss_dssp             -CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence            34444445555444444444444444444455555555666667777777777777777777777766554   444444


Q ss_pred             hhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011839          232 TQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE  288 (476)
Q Consensus       232 LkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLe  288 (476)
                      .+.+    +.|..++.-+.+|..++..+.........++..|.+.|+.+.....+++
T Consensus        86 ~q~s----e~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e  138 (168)
T 3o0z_A           86 GHDS----EMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE  138 (168)
T ss_dssp             HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4444    3444555555666666666666666677777777777776655555544

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.48  E-value=0.52  Score=59.86  Aligned_cols=91  Identities=11%  Similarity=0.157  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          190 LQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQE  269 (476)
Q Consensus       190 ~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeE  269 (476)
                      ..+++.++.++.....+-.....+++.+++++..|+++.+..+.+=-.|+..+......+.....=|..|..++.-|.+.
T Consensus      2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~ 2092 (3245)
T 3vkg_A         2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQ 2092 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHH
Confidence            35566677777777777777777888888888888887777554333666666655555555555566666666777777


Q ss_pred             HHHHHHHHHHH
Q 011839          270 NRQLKENVSSL  280 (476)
Q Consensus       270 Iq~LkeqIseL  280 (476)
                      ++.+..++..+
T Consensus      2093 ~~~l~~~~~~L 2103 (3245)
T 3vkg_A         2093 SENFNTQMSTV 2103 (3245)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            77776666655

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.47  E-value=0.11  Score=59.90  Aligned_cols=127  Identities=17%  Similarity=0.218  Sum_probs=40.2

Q ss_pred             HHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 011839          151 EATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALE---QKISQLRDESAALNMKRASLEERLKLLEAD  227 (476)
Q Consensus       151 ~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~Le---peiekL~~EeasLkQKLasLEeKL~~LKaE  227 (476)
                      ...+|.+|.+|+..++....+...|.+++..++.   .+.++.+.|+   .+++.+..+...++.++..+++++..|..+
T Consensus       923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~---~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~  999 (1080)
T 2dfs_A          923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEI---TYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKE  999 (1080)
T ss_dssp             ----------------------------CHHHHH---HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555566666665555555555555555444432   2222333332   222223333333333334444444333222


Q ss_pred             hhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011839          228 KDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK  290 (476)
Q Consensus       228 RD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeee  290 (476)
                      ...       +.+....+...+..++   ..|++.+++|..+++.|+.+++++...+...+.+
T Consensus      1000 ~~~-------~~ke~~~lee~~~~~~---~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~ 1052 (1080)
T 2dfs_A         1000 LHQ-------TQTEKKTIEEWADKYK---HETEQLVSELKEQNTLLKTEKEELNRRIHDQAKE 1052 (1080)
T ss_dssp             HHH-------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222       1111222222222222   2444556666666666666666666555555543

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=96.47  E-value=0.36  Score=44.23  Aligned_cols=120  Identities=22%  Similarity=0.187  Sum_probs=87.7

Q ss_pred             hhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHH
Q 011839           97 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLE  176 (476)
Q Consensus        97 l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LE  176 (476)
                      +..+.+--..+=...+..|..|++++...-..|        +-|+.--....++...++.+|+.|...+.-...+-...+
T Consensus        26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nl--------KsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AE   97 (155)
T 2efr_A           26 LKKLLERAEERAELSEGKSAELEEELKTVTNNL--------KSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAE   97 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444446666778888888888888887776        446777788888999999999999998888887777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011839          177 MNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL  224 (476)
Q Consensus       177 eqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L  224 (476)
                      ..+..|+..|+...-++..-+.+|..+..+-...-..|.++.++.-.|
T Consensus        98 Rsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~  145 (155)
T 2efr_A           98 RSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHL  145 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence            778888888887777777777777777666655555555554444444

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.39  E-value=0.038  Score=63.55  Aligned_cols=73  Identities=14%  Similarity=0.172  Sum_probs=43.4

Q ss_pred             hhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhhhHHHHHHhH
Q 011839          234 MES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGAL  312 (476)
Q Consensus       234 kEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~  312 (476)
                      +|. .++..+..+..++..++.++..+.+++..+++.++++++   +|+..+..|+.+.        ..|+.|++.+...
T Consensus       977 ~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~--------~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A          977 EEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQN--------TLLKTEKEELNRR 1045 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH--------HHHHHHHHHHHHH
Confidence            344 556667777777777777777777777777777666653   3334444444433        3556666665554


Q ss_pred             HHHHH
Q 011839          313 IDKLI  317 (476)
Q Consensus       313 v~kl~  317 (476)
                      +.++-
T Consensus      1046 ~~~~~ 1050 (1080)
T 2dfs_A         1046 IHDQA 1050 (1080)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.38  E-value=0.77  Score=58.40  Aligned_cols=96  Identities=14%  Similarity=0.188  Sum_probs=74.7

Q ss_pred             chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHHH
Q 011839          237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKL  316 (476)
Q Consensus       237 sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl  316 (476)
                      .++..+..++..+...+.++..++..+..++..++.|+.+.+....+-+.|+.++..        ....++.|..||..|
T Consensus      2011 Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~--------~~~kl~rA~~Li~gL 2082 (3245)
T 3vkg_A         2011 PLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSK--------VKNKVDRSIALLDNL 2082 (3245)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhh
Confidence            566677777777777777777888888888888888888888777777777777653        356889999999999


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhh
Q 011839          317 ITENIELVEKVNDLSVKLDRQSVA  340 (476)
Q Consensus       317 ~~en~~l~ekvneL~~~l~~~~~~  340 (476)
                      -.|+.--.+.+.+|..++...--.
T Consensus      2083 ~~Ek~RW~~~~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A         2083 NSERGRWEQQSENFNTQMSTVVGD 2106 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhccccHHHHHHHHHHHHHhccHH
Confidence            999999998888887655544333

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=95.93  E-value=0.42  Score=41.89  Aligned_cols=112  Identities=20%  Similarity=0.195  Sum_probs=54.6

Q ss_pred             HHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 011839          150 KEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKD  229 (476)
Q Consensus       150 k~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD  229 (476)
                      ..+.++..|+.|+..+......+..|+.+...|..++......+.              .-...++..++....|.+   
T Consensus        14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~--------------~E~~~l~e~EE~~~~L~~---   76 (129)
T 2fxo_A           14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQ--------------AEQDNLADAEERCDQLIK---   76 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHH---
Confidence            445566666666666665555555555555555555544332222              112223333333333333   


Q ss_pred             hHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          230 SWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRS  282 (476)
Q Consensus       230 ~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs  282 (476)
                          ..+.|...|..+...+.........|...+..+..++..|+.+|..+..
T Consensus        77 ----~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~  125 (129)
T 2fxo_A           77 ----NKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL  125 (129)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                2333444454444444444444555555555555555555555555543

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=95.31  E-value=0.12  Score=42.84  Aligned_cols=52  Identities=23%  Similarity=0.269  Sum_probs=40.8

Q ss_pred             chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011839          237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE  288 (476)
Q Consensus       237 sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLe  288 (476)
                      .|+..|..++..+..|..+...+......+..+|++|+.....|+.+|..|=
T Consensus        24 lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL   75 (81)
T 2jee_A           24 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL   75 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566677777777777888888888888888888888888888888887663

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=94.64  E-value=0.29  Score=40.63  Aligned_cols=66  Identities=20%  Similarity=0.318  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          135 ETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGG-------LEMNIANLQSEKEFWLQKEAALEQKI  200 (476)
Q Consensus       135 EkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~-------LEeqIkqLe~EIs~~~qEla~Lepei  200 (476)
                      +.+.+|+.....++..++-++..|..|+.++....+....       |..++.+|+.+...|...+..|..++
T Consensus         6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~   78 (81)
T 2jee_A            6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM   78 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4456777778888888888888888888888777666665       66666667777777666666665554

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=94.46  E-value=2.9  Score=38.28  Aligned_cols=44  Identities=14%  Similarity=0.181  Sum_probs=21.2

Q ss_pred             chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL  280 (476)
Q Consensus       237 sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseL  280 (476)
                      .|+..|..+...+..-......+..+++....++..+...+..|
T Consensus       102 kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~  145 (155)
T 2efr_A          102 KLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHL  145 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence            44445555555555445555555555554444444444444433

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=94.31  E-value=2.5  Score=36.95  Aligned_cols=39  Identities=15%  Similarity=0.208  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 011839          111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQK  150 (476)
Q Consensus       111 ~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk  150 (476)
                      .++.++.++.++..++.+++..-..+ +.|+..+..+.+.
T Consensus        11 ~e~E~~~~~eel~~lke~l~k~e~~r-~ele~~~~~l~~E   49 (129)
T 2fxo_A           11 REKEMASMKEEFTRLKEALEKSEARR-KELEEKMVSLLQE   49 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            44555566666666665554333333 3333333333333

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=93.96  E-value=3.7  Score=37.62  Aligned_cols=33  Identities=24%  Similarity=0.312  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011839          192 KEAALEQKISQLRDESAALNMKRASLEERLKLL  224 (476)
Q Consensus       192 Ela~LepeiekL~~EeasLkQKLasLEeKL~~L  224 (476)
                      +++.+.+++..|......-..+-...|.....+
T Consensus        52 ~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~i   84 (154)
T 2ocy_A           52 ELSDRDDEVKRLREDIAKENELRTKAEEEADKL   84 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555544444444444444444333

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=93.78  E-value=2.6  Score=35.58  Aligned_cols=50  Identities=12%  Similarity=0.131  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHH
Q 011839          138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE  187 (476)
Q Consensus       138 kQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs  187 (476)
                      ..|+.+.+.+.-....++..++.++.......+.-..|.-+|..|+.+.+
T Consensus        12 ~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld   61 (101)
T 3u1c_A           12 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRD   61 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            44555666666666666666666655433333333333333333333333

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=93.56  E-value=2  Score=36.04  Aligned_cols=52  Identities=15%  Similarity=0.197  Sum_probs=22.7

Q ss_pred             chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011839          237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE  288 (476)
Q Consensus       237 sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLe  288 (476)
                      +|++.+..+..+...+...+......+..........-..+.+|..+|+-|+
T Consensus        48 sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE   99 (101)
T 3u59_A           48 GLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE   99 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4444444444444444444444444444433333333344444444444443

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=93.40  E-value=2.3  Score=35.83  Aligned_cols=77  Identities=14%  Similarity=0.156  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHH
Q 011839          179 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQ  255 (476)
Q Consensus       179 IkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~Q  255 (476)
                      +..|+.++.....+.+.+..++..|..+.+.+...+..++++...|..+-..+.+.-......+.....+..+|..+
T Consensus         6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q   82 (96)
T 3q8t_A            6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQ   82 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777777778888888888888888888888888888888884444444333333333333333333333333

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=92.89  E-value=2.8  Score=36.48  Aligned_cols=67  Identities=15%  Similarity=0.235  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHH
Q 011839          113 GTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIA  180 (476)
Q Consensus       113 k~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIk  180 (476)
                      ..|..|++++..+... ...++..|+.|+-.++++=+..-..-..+.+|+........+.+-|+.+|.
T Consensus        35 ~~~~~Lq~El~~lr~~-~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~  101 (111)
T 2v66_B           35 KQVSVLEDDLSQTRAI-KEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD  101 (111)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555555 444555556666666666665555666666666666666655555555544

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=92.28  E-value=4.6  Score=34.04  Aligned_cols=20  Identities=25%  Similarity=0.298  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 011839          197 EQKISQLRDESAALNMKRAS  216 (476)
Q Consensus       197 epeiekL~~EeasLkQKLas  216 (476)
                      .........+++.|..++.-
T Consensus        78 ek~~~~aE~ev~~L~Rriql   97 (101)
T 3u1c_A           78 EENAAKAESEVASLNRRIQL   97 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333344444444333

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=91.86  E-value=3.3  Score=36.09  Aligned_cols=89  Identities=19%  Similarity=0.206  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 011839          116 QQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAA  195 (476)
Q Consensus       116 kqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~  195 (476)
                      +.-+.+|..+.+.+        ..|+.+.+.+....+.+|..|.+++......   -..+...|..|+.++.....+++.
T Consensus        32 ~~~k~Ei~elrr~i--------q~L~~el~~l~~~~~~LE~~l~e~e~~~~~~---l~~~q~~i~~lE~eL~~~r~e~~~  100 (129)
T 3tnu_B           32 RNTKHEISEMNRMI--------QRLRAEIDNVKKQCANLQNAIADAEQRGELA---LKDARNKLAELEEALQKAKQDMAR  100 (129)
T ss_dssp             --CHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHH
Confidence            33444555555553        4566666677777788888888887755433   344666677777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 011839          196 LEQKISQLRDESAALNMKRA  215 (476)
Q Consensus       196 LepeiekL~~EeasLkQKLa  215 (476)
                      ...+|..|.+..-.|...++
T Consensus       101 ql~EYq~LlnvKl~Ld~EIa  120 (129)
T 3tnu_B          101 LLREYQELMNTKLALDVEIA  120 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            77778888777766655544

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=91.84  E-value=2.6  Score=36.82  Aligned_cols=90  Identities=16%  Similarity=0.198  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 011839          115 VQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA  194 (476)
Q Consensus       115 IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla  194 (476)
                      ++..+.+|..+.+.+        ..|+.+...+....+.+|..|.+++.......   ..++..|..|+.++.....+++
T Consensus        33 l~~~k~Ei~elrr~i--------q~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l---~~~q~~i~~lE~eL~~~r~em~  101 (131)
T 3tnu_A           33 VQSGKSEISELRRTM--------QNLEIELQSQLSMKASLENSLEETKGRYCMQL---AQIQEMIGSVEEQLAQLRCEME  101 (131)
T ss_dssp             --------CHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH--------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            444555566666654        45666667776777888888888887644433   3466667777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 011839          195 ALEQKISQLRDESAALNMKRA  215 (476)
Q Consensus       195 ~LepeiekL~~EeasLkQKLa  215 (476)
                      ....+|..|.+..-.|...++
T Consensus       102 ~ql~EYq~Ll~vKl~Ld~EIa  122 (131)
T 3tnu_A          102 QQNQEYKILLDVKTRLEQEIA  122 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            777778777777766655544

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=91.72  E-value=1.4  Score=36.35  Aligned_cols=59  Identities=22%  Similarity=0.286  Sum_probs=36.6

Q ss_pred             hHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          153 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALN  211 (476)
Q Consensus       153 ~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLk  211 (476)
                      .+...+.+|+.+.+.-...+...+..+..|+..++...--...|+.+++.|.++-..|+
T Consensus        25 n~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk   83 (86)
T 3swk_A           25 NLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK   83 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34555566666666666666666666666666666666555666666666666655543

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=91.22  E-value=5.9  Score=33.17  Aligned_cols=27  Identities=19%  Similarity=0.261  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 011839          138 QQLQRQNDLRMQKEATLEETIKQLRNQ  164 (476)
Q Consensus       138 kQLq~E~~d~lQk~A~LE~tIKdLks~  164 (476)
                      ..|+.+.+.++-..-.++..++.+...
T Consensus        12 ~~lk~e~e~a~d~ae~~e~~~k~~e~~   38 (101)
T 3u59_A           12 QMLKLDKENAIDRAEQAEADKKQAEDR   38 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555555555544

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=91.06  E-value=9.1  Score=35.03  Aligned_cols=19  Identities=16%  Similarity=0.148  Sum_probs=8.3

Q ss_pred             hHhhHHHHHHHHHHHHHHH
Q 011839          107 KEATLEGTVQQLQNECDLY  125 (476)
Q Consensus       107 ~e~~~Ek~IkqLqeEi~~l  125 (476)
                      +.+.|++++..++.++...
T Consensus        14 ~qs~LeD~L~~~R~el~~~   32 (154)
T 2ocy_A           14 KQSHLEEQLNKSLKTIASQ   32 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHHH
Confidence            3444444444444444433

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=91.02  E-value=3.9  Score=43.99  Aligned_cols=42  Identities=12%  Similarity=0.166  Sum_probs=21.9

Q ss_pred             chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS  278 (476)
Q Consensus       237 sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIs  278 (476)
                      .|+++|..|+..+..-...|..|+..+..+..+||.|...|+
T Consensus       114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId  155 (562)
T 3ghg_A          114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID  155 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555554445555555555555555555544443

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=90.54  E-value=3.2  Score=34.26  Aligned_cols=66  Identities=17%  Similarity=0.189  Sum_probs=31.3

Q ss_pred             HHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011839          156 ETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL  221 (476)
Q Consensus       156 ~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL  221 (476)
                      ..++.|+..+......+..++.+...|..++......++........|......|..++..+++++
T Consensus        21 eel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl   86 (89)
T 3bas_A           21 KQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV   86 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333333333333333333344444444444443333355556666666666666665555555443

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=89.82  E-value=8.1  Score=32.44  Aligned_cols=47  Identities=13%  Similarity=0.252  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011839          116 QQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRN  163 (476)
Q Consensus       116 kqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks  163 (476)
                      ..|+.++..++.. +..+...+..|+.++..+-..+..++.....|..
T Consensus         7 ~~l~~eL~~l~~e-E~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~   53 (96)
T 3q8t_A            7 EQLQRELKELALE-EERLIQELEDVEKNRKVVAENLEKVQAEAERLDQ   53 (96)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence            4445555555555 3333333355555555444444444444444443

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=89.64  E-value=5  Score=33.07  Aligned_cols=75  Identities=21%  Similarity=0.259  Sum_probs=44.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHH
Q 011839          110 TLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSE  185 (476)
Q Consensus       110 ~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~E  185 (476)
                      -.++.++.++.++..++..++-.-..+ +.|+..+..+++....+...+.+..+........+..|+..|..++..
T Consensus        11 ~~eeEm~~~eeel~~lke~l~k~e~~r-kele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~r   85 (89)
T 3bas_A           11 RQEEEMKEQLKQMDKMKEDLAKTERIK-KELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKL   85 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666666777776666665444444 666666666666666666665555555555555555555555555443

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=89.33  E-value=3.2  Score=34.22  Aligned_cols=73  Identities=22%  Similarity=0.282  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHH
Q 011839          116 QQLQNECDLYKEKVQATLEETIQQLQRQ-------NDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF  188 (476)
Q Consensus       116 kqLqeEi~~lkqkLE~llqEkIkQLq~E-------~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~  188 (476)
                      +.|+.+|..++.. .+.+.-.|.+++..       ++.=+...+.+|..|.-|+-..+..--.+..|+.++..|+.+|..
T Consensus         3 ~eLr~qi~~l~~e-~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~f   81 (86)
T 3swk_A            3 RELRRQVDQLTND-KARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF   81 (86)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444 33333333444433       344445688999999999999999999999999999999999985


Q ss_pred             H
Q 011839          189 W  189 (476)
Q Consensus       189 ~  189 (476)
                      .
T Consensus        82 L   82 (86)
T 3swk_A           82 L   82 (86)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=88.52  E-value=6.2  Score=32.97  Aligned_cols=38  Identities=16%  Similarity=0.219  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          175 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNM  212 (476)
Q Consensus       175 LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQ  212 (476)
                      .+..|..|+..++....+.+.+..++..|......++.
T Consensus        54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~   91 (93)
T 3s4r_A           54 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE   91 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44455555555555555555555555555544444443

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=88.22  E-value=1.7  Score=38.84  Aligned_cols=39  Identities=13%  Similarity=0.256  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011839          250 TQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE  288 (476)
Q Consensus       250 ~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLe  288 (476)
                      .+|.+++..++..+.++..++..|+..+..|+.++..|+
T Consensus        92 ~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le  130 (138)
T 3hnw_A           92 YDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE  130 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333344444444444444444444443

>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C

Probab=87.63  E-value=4  Score=42.44  Aligned_cols=105  Identities=10%  Similarity=0.039  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHH
Q 011839          175 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRM  254 (476)
Q Consensus       175 LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~  254 (476)
                      +++.|..++.-+..-+++|..+..+++.+..+...|.+.+...             |-..+-.....+....+....+.+
T Consensus        25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~-------------~~~~Q~~~~d~~e~~tq~skkml~   91 (409)
T 1m1j_C           25 IADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI-------------YPSEKQTLPQSIEQLTQKSKKIIE   91 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------SCSSTTCCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------cccccCCCCCchhhHHHHHHHHHH
Confidence            4555666777677666677666666666666665554444332             333333222222222445556666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 011839          255 QVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL  292 (476)
Q Consensus       255 QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~  292 (476)
                      ++..++..+.....+|..|+..+..++..|+.|+..+.
T Consensus        92 ~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~  129 (409)
T 1m1j_C           92 EIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIA  129 (409)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            77777777777777777777777766666666655443

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=87.13  E-value=7.1  Score=34.04  Aligned_cols=47  Identities=15%  Similarity=0.273  Sum_probs=26.4

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011839          241 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD  287 (476)
Q Consensus       241 ~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeL  287 (476)
                      .|.-|+++..--..+-..=...+..+..++..|..++..|+.+++.|
T Consensus        63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l  109 (110)
T 2v4h_A           63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL  109 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence            34444444444444444444555566666777777776666665544

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=86.96  E-value=3.8  Score=37.52  Aligned_cols=13  Identities=31%  Similarity=0.460  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHH
Q 011839          313 IDKLITENIELVE  325 (476)
Q Consensus       313 v~kl~~en~~l~e  325 (476)
                      +.+|..||..|++
T Consensus       119 l~kLq~EN~~LV~  131 (152)
T 3a7p_A          119 LSDLKKEHSQLVA  131 (152)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3355566666655

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=86.34  E-value=5.3  Score=33.37  Aligned_cols=40  Identities=25%  Similarity=0.287  Sum_probs=27.8

Q ss_pred             hHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 011839          153 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQK  192 (476)
Q Consensus       153 ~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qE  192 (476)
                      -.+..|.+|+..++.....++.++-+|..|+.++..+..+
T Consensus        53 ~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K   92 (93)
T 3s4r_A           53 LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK   92 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4567777777777777777777777777777766655443

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=86.27  E-value=5.6  Score=35.48  Aligned_cols=20  Identities=25%  Similarity=0.463  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhh
Q 011839           80 HLLQREAMAILEETVKHLRNE  100 (476)
Q Consensus        80 ~~~q~e~~~~~eeti~~l~~e  100 (476)
                      .+|++=| +.+.+.|+.++.-
T Consensus        28 e~L~~vA-~~vd~km~ei~~~   47 (138)
T 3hnw_A           28 EYLQRVA-SYINNKITEFNKE   47 (138)
T ss_dssp             HHHHHHH-HHHHHHHHHHTTC
T ss_pred             HHHHHHH-HHHHHHHHHHHhc
Confidence            3555555 5778888777754

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=85.98  E-value=4.1  Score=33.58  Aligned_cols=53  Identities=9%  Similarity=0.150  Sum_probs=43.8

Q ss_pred             hHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          153 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRD  205 (476)
Q Consensus       153 ~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~  205 (476)
                      .+|.+|..|+..++...+++..+..+++++-...+-++.++..+.-.+.+|-.
T Consensus        24 ~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL~~   76 (79)
T 3cvf_A           24 ELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARLAE   76 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcc
Confidence            47788888888888888888888888999988888888888888877777653

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=85.49  E-value=3.7  Score=35.72  Aligned_cols=95  Identities=16%  Similarity=0.266  Sum_probs=31.7

Q ss_pred             Hhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh---cccchhhhHH
Q 011839          231 WTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT---SEQKDFSTQI  306 (476)
Q Consensus       231 WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~---~~~e~~~~qi  306 (476)
                      |.+.-+ .++..+..-...+...+.++..+...+..|.-+++.++.+...|...+.+.+........   .....|..++
T Consensus        12 ~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL   91 (129)
T 3tnu_B           12 WYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEAL   91 (129)
T ss_dssp             ----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            433333 333333333333333444444444444444444444444444444444443333321100   0112334444


Q ss_pred             HHHHhHHHHHHHHHHHHHH
Q 011839          307 EAAGALIDKLITENIELVE  325 (476)
Q Consensus       307 e~a~~~v~kl~~en~~l~e  325 (476)
                      ..+..-+..++.|-++|+.
T Consensus        92 ~~~r~e~~~ql~EYq~Lln  110 (129)
T 3tnu_B           92 QKAKQDMARLLREYQELMN  110 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4455555566666666664

>1z2t_A Anchor peptide Ser65-Leu87 of ALMGS; lipid binding protein; NMR {Synthetic}

Probab=85.24  E-value=0.29  Score=31.95  Aligned_cols=13  Identities=62%  Similarity=1.001  Sum_probs=11.8

Q ss_pred             chhHHHHHHhhcc
Q 011839          453 PFRLVSFVAKYVS  465 (476)
Q Consensus       453 pfrlisfva~yvs  465 (476)
                      -|||+-||-|||-
T Consensus         4 gfrlvlfvkryvr   16 (26)
T 1z2t_A            4 GFRLVLFVKRYVR   16 (26)
T ss_dssp             CTTHHHHHHHHTH
T ss_pred             cEEEeeeHHHHHH
Confidence            4999999999994

>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*

Probab=85.06  E-value=6.9  Score=30.85  Aligned_cols=64  Identities=13%  Similarity=0.150  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          193 EAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENR  271 (476)
Q Consensus       193 la~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq  271 (476)
                      ++.|..+|+.+-..+                 +.|=+.|.+.-+ .++..+......+...+.++..+...+..|.-+++
T Consensus        11 l~eiRaQYE~ia~kn-----------------r~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~   73 (77)
T 3trt_A           11 MRDVRQQYESVAAKN-----------------LQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVD   73 (77)
T ss_dssp             HHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh-----------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666666665555                 222245665555 55555555555555555555555555555555555


Q ss_pred             HH
Q 011839          272 QL  273 (476)
Q Consensus       272 ~L  273 (476)
                      .+
T Consensus        74 sl   75 (77)
T 3trt_A           74 AL   75 (77)
T ss_dssp             HH
T ss_pred             hh
Confidence            44

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=85.00  E-value=21  Score=36.22  Aligned_cols=49  Identities=6%  Similarity=0.048  Sum_probs=25.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011839          172 EGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL  224 (476)
Q Consensus       172 ea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L  224 (476)
                      ....++-++.++..+...+.+.   ..+. +..+....|.++|+.++..+.++
T Consensus       368 ~~t~eeal~~~~~~i~~~l~~~---~~~~-e~~~~~~~~~~~~~~~~~~~~~~  416 (471)
T 3mq9_A          368 RQTVDEALKDAQTRITAARDGL---RAVM-EARNVTHLLQQELTEAQKGFQDV  416 (471)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhh---HHHH-HhhhHHHHHHHHHHHHhhhHHHH
Confidence            3344555555555555433332   2222 34456666666666666665555

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=84.79  E-value=12  Score=38.04  Aligned_cols=42  Identities=21%  Similarity=0.177  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011839          180 ANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL  221 (476)
Q Consensus       180 kqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL  221 (476)
                      ++++.+.....+....+..+++++.++++.++..+..+...+
T Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (487)
T 3oja_A          424 VEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLAL  465 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhh
Confidence            334444444444444444455555554444444444443333

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=84.48  E-value=8.3  Score=35.30  Aligned_cols=55  Identities=11%  Similarity=0.089  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhh
Q 011839          180 ANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQM  234 (476)
Q Consensus       180 kqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkk  234 (476)
                      ..|+..|..+..++..-..-++.++++..+|.-.+..++.+++.|+.|.+.++..
T Consensus        78 ~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~R  132 (152)
T 3a7p_A           78 KSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVAR  132 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333334445555566666666666666666666666554433

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=84.48  E-value=3.2  Score=36.27  Aligned_cols=24  Identities=13%  Similarity=0.130  Sum_probs=13.0

Q ss_pred             hhhHHHHHHhHHHHHHHHHHHHHH
Q 011839          302 FSTQIEAAGALIDKLITENIELVE  325 (476)
Q Consensus       302 ~~~qie~a~~~v~kl~~en~~l~e  325 (476)
                      +..++..+..-+..++.|-++|+.
T Consensus        89 lE~eL~~~r~em~~ql~EYq~Ll~  112 (131)
T 3tnu_A           89 VEEQLAQLRCEMEQQNQEYKILLD  112 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444555566666666664

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=83.84  E-value=21  Score=31.03  Aligned_cols=11  Identities=9%  Similarity=0.302  Sum_probs=6.0

Q ss_pred             hhhhHhhhhhc
Q 011839          227 DKDSWTQMESV  237 (476)
Q Consensus       227 ERD~WLkkEIs  237 (476)
                      ||..||-.|+.
T Consensus        91 ErnalLE~El~  101 (111)
T 2v66_B           91 ERNAFLESELD  101 (111)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            45556555553

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=82.57  E-value=8.9  Score=41.31  Aligned_cols=108  Identities=11%  Similarity=0.120  Sum_probs=60.3

Q ss_pred             ccCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011839           59 DADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQ  138 (476)
Q Consensus        59 ~~~~~~~~~~~~~~~~e~~~~~~~q~e~~~~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIk  138 (476)
                      |..--||+|-+.       +..++..|-  =|-.+|..|+++.+-+.|           ....+..+...+-..+..++.
T Consensus        40 DwGvkCPSGCrL-------QglLdkqEr--DltkrINELKnqLEdlsK-----------nsKdseqy~k~~~E~Lr~rq~   99 (562)
T 3ghg_A           40 DWNYKCPSGCRM-------KGLIDEVNQ--DFTNRINKLKNSLFEYQK-----------NNKDSHSLTTNIMEILRGDFS   99 (562)
T ss_dssp             SBTTEEECHHHH-------HHHHHHHHH--HHHHHHHHHHHHHTHHHH-----------HHHHHHHHHHHHHHTTSSHHH
T ss_pred             ccCCCCCcccch-------hhhHHhhcC--cHHHHHHHHHHHHHHHHh-----------hchhHHHHHHHHHHHHHHHHH
Confidence            566678888531       233444444  455666666666655432           233333333444444444445


Q ss_pred             HHHHHHHHHHHHHH-hHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHH
Q 011839          139 QLQRQNDLRMQKEA-TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE  187 (476)
Q Consensus       139 QLq~E~~d~lQk~A-~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs  187 (476)
                      +.. +++....+++ .|+-+|..|+.++....++...|+..|..+..+|.
T Consensus       100 q~~-dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQ  148 (562)
T 3ghg_A          100 SAN-NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMK  148 (562)
T ss_dssp             HHH-HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555 6666666666 77777777777776666555555555555544444

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=82.33  E-value=15  Score=29.97  Aligned_cols=20  Identities=0%  Similarity=0.204  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 011839          261 ESRNNLLQENRQLKENVSSL  280 (476)
Q Consensus       261 ee~s~LeeEIq~LkeqIseL  280 (476)
                      ..+..+...+..+...+.++
T Consensus        79 ~~i~~le~~~~~~~~~l~~l   98 (107)
T 1fxk_A           79 LREKTIERQEERVMKKLQEM   98 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=82.28  E-value=20  Score=29.69  Aligned_cols=32  Identities=16%  Similarity=0.300  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011839          193 EAALEQKISQLRDESAALNMKRASLEERLKLL  224 (476)
Q Consensus       193 la~LepeiekL~~EeasLkQKLasLEeKL~~L  224 (476)
                      +..+..++..|......+..++..+...+..|
T Consensus        12 ~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l   43 (112)
T 1l8d_A           12 KTTIEEERNEITQRIGELKNKIGDLKTAIEEL   43 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444455555555555666666666666555

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=82.24  E-value=20  Score=29.65  Aligned_cols=30  Identities=23%  Similarity=0.399  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          253 RMQVVELEESRNNLLQENRQLKENVSSLRS  282 (476)
Q Consensus       253 q~QVe~Leee~s~LeeEIq~LkeqIseLqs  282 (476)
                      ...++.++..+..+...+..+...+.+++.
T Consensus        76 ~~~~e~ie~~i~~le~~~~~l~~~l~~lk~  105 (117)
T 2zqm_A           76 KEKIETLEVRLNALERQEKKLNEKLKELTA  105 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333344444444444443333

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=82.08  E-value=18  Score=29.04  Aligned_cols=28  Identities=14%  Similarity=0.218  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011839          136 TIQQLQRQNDLRMQKEATLEETIKQLRN  163 (476)
Q Consensus       136 kIkQLq~E~~d~lQk~A~LE~tIKdLks  163 (476)
                      +|.+|+.+.+.+.-....++..++..+.
T Consensus         7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~   34 (81)
T 1ic2_A            7 KMQMLKLDKENALDRAEQAEADKKAAEE   34 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555544443

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=81.80  E-value=27  Score=30.81  Aligned_cols=68  Identities=18%  Similarity=0.236  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA  215 (476)
Q Consensus       138 kQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLa  215 (476)
                      ++.+.+-.-+-+.+-.|-..++..+...          +.+++.|+.+|..+.++|-....+++.|+.++..+...+.
T Consensus        42 ~~~eaQAaTCNqTV~tL~~SL~~ekaq~----------q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~  109 (121)
T 3mq7_A           42 QDVEAQAATANHTVMALMASLDAEKAQG----------QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA  109 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence            4445555555555555555555544432          4467888888888888888788888888777766655544

>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1

Probab=81.41  E-value=20  Score=29.14  Aligned_cols=68  Identities=18%  Similarity=0.217  Sum_probs=44.5

Q ss_pred             HHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          145 DLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA  215 (476)
Q Consensus       145 ~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLa  215 (476)
                      +.+....+.+|..|.+++......   ...++..|..|+.++.....+++....+|..|.+..-.|...++
T Consensus         4 ~~l~~~~~sLE~~l~e~e~~~~~~---~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIa   71 (84)
T 1gk4_A            4 DALKGTNESLERQMREMEENFAVE---AANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIA   71 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            334445667777777777654432   34456667777777777777777777777777777766655544

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=81.32  E-value=44  Score=35.34  Aligned_cols=18  Identities=6%  Similarity=0.359  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 011839          111 LEGTVQQLQNECDLYKEK  128 (476)
Q Consensus       111 ~Ek~IkqLqeEi~~lkqk  128 (476)
                      .++.|++|+..++.+.++
T Consensus        98 V~~~LqeLe~~l~~lsn~  115 (464)
T 1m1j_B           98 VKPVLRDLKDRVAKFSDT  115 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHhhh
Confidence            556666666666666544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	476
d2ap3a1	185	Hypothetical protein MW0975 (SA0943) {Staphylococc	89.98

>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: MW0975(SA0943)-like
family: MW0975(SA0943)-like
domain: Hypothetical protein MW0975 (SA0943)
species: Staphylococcus aureus [TaxId: 1280]

Probab=89.98  E-value=3.3  Score=32.06  Aligned_cols=44  Identities=5%  Similarity=0.070  Sum_probs=19.8

Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839          239 KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRS  282 (476)
Q Consensus       239 ke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs  282 (476)
                      ...+......+..+...+..+......+...+..+...+..+..
T Consensus       136 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  179 (185)
T d2ap3a1         136 FKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQK  179 (185)
T ss_dssp             HHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444333