Citrus Sinensis ID: 011846

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470------
MLRLINSSGGSLRSSAMSPAAATTKMMSSSTVAVKNPRWSLCSSNNSGLFSGHVNNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKYILPSPYLLHVITFS
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccEEEcccEEEEccccHHHHHHHHHHHHHccccccccEEEEEccccccccccccccHHHHHHHHHHccEEEcccccccHHHHHHHccccccccccHHHHHHHccEEEEccEEccccccccccccccEEEEEcccccccccccEEEccccEEEEEEEcccccccEEEEEEEcccccEEEEEEEcHHHHHHHHHHHHHHHHHccccEEEEEcccHHccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHcccccccccEEEcccccEEEEccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHccc
cccEEcccHHHHHHHcccccccccccccccHHHHcccccccccccccHHHcccccccccccHHHHHHHHHHccccHHHHHcEEccccEEEEEccHHHHHHHHHHHHHcccccEEccEEEEEccHHHHHHcccHHHHHHHHHHHHHcEEEEcccccccHHHHHHHccccccccHHHHHHHHHccEEEEEEccccccccccccccccEEEEEEcccHHHHcEEEEEcccEEEEEEEEEccccccEEEEEEEEcccEEEEEEEEEHHHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHcHHHHHHccccEEEEEHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHcccccEEEEEEccccccEEEEccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccEcccEccHHHHc
mlrlinssggslrssamspaaaTTKMMSsstvavknprwslcssnnsglfsghvnnrvsfrnqlapamsfrcfasatgidrvkvqnpivemdgdEMTRIIWQMIKDKlifpyldldikyydlgilnrdatddkvTVESAEATLKYNVAIkcatitpdetrmkefglksmwrspngtirnilngtvfrepilcqniprivpgwkkpicigrhafgdqyratdtvikgpgklkmvfdpedgtgpveldvynfkgPGIALAMYNVDESIRAFAESSMslafskkwplylsTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVwacknydgdvqSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAhgtvtrhfrlhqkgqetstNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAIlvhgpkyilpspyllhvitfs
mlrlinssggslrssaMSPAAATTKMMSSSTVAVKNPRWSLCSSNNSGLFSGHVNNRVSFRNQLAPAMSFRCFASatgidrvkvqnpivemdgDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESaeatlkynvaikcatitpdetrMKEFglksmwrspngtIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSlafskkwplYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGtvtrhfrlhqkgqetstnsIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHgpkyilpspyLLHVITFS
MLRLINssggslrssamsPAAATTKMMSSSTVAVKNPRWSLCSSNNSGLFSGHVNNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKYILPSPYLLHVITFS
**************************************WSLCSSNNSGLFSGHVNNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLH********NSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKYILPSPYLLHVITF*
**********************************************************************************KVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKYILPSPYLLHVITFS
*********************************VKNPRWSLCSSNNSGLFSGHVNNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKYILPSPYLLHVITFS
*******************************VAVKNPRWSLCSSNNSGLFSGHVNNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKYILPSPYLLHVI***
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooo
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MLRLINSSGGSLRSSAMSPAAATTKMMSSSTVAVKNPRWSLCSSNNSGLFSGHVNNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKYILPSPYLLHVITFS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query476 2.2.26 [Sep-21-2011]
Q40345433 Isocitrate dehydrogenase N/A no 0.838 0.921 0.771 0.0
P50218415 Isocitrate dehydrogenase N/A no 0.804 0.922 0.799 0.0
P50217416 Isocitrate dehydrogenase N/A no 0.800 0.915 0.806 0.0
Q06197413 Isocitrate dehydrogenase no no 0.800 0.922 0.803 0.0
Q04467452 Isocitrate dehydrogenase yes no 0.829 0.873 0.673 1e-166
Q4R502452 Isocitrate dehydrogenase N/A no 0.829 0.873 0.670 1e-165
P48735452 Isocitrate dehydrogenase yes no 0.829 0.873 0.670 1e-165
P56574452 Isocitrate dehydrogenase yes no 0.829 0.873 0.660 1e-164
P33198421 Isocitrate dehydrogenase yes no 0.829 0.938 0.663 1e-164
P54071452 Isocitrate dehydrogenase yes no 0.829 0.873 0.660 1e-164
>sp|Q40345|IDHP_MEDSA Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1 Back     alignment and function desciption
 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/407 (77%), Positives = 352/407 (86%), Gaps = 8/407 (1%)

Query: 63  QLAPAMSFRCF-------ASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDL 115
           Q +P +SF  F        +  G  ++KV NPIVEMDGDEMTRIIW+ IKDKLIFP+++L
Sbjct: 1   QFSPNLSFSAFFPIITFTTATMGFQKIKVANPIVEMDGDEMTRIIWKYIKDKLIFPFVEL 60

Query: 116 DIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNG 175
           DIKY+DLG+  RD T+DKVTVESAEATLKYNVAIKCATITPDE R+KEFGLKSMWRSPNG
Sbjct: 61  DIKYFDLGLPYRDETNDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKSMWRSPNG 120

Query: 176 TIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFD 235
           TIRNILNGTVFREPI+C+NIPR++PGW KPICIGRHAFGDQYRATD+VIKGPGKLK+VF 
Sbjct: 121 TIRNILNGTVFREPIICKNIPRLIPGWTKPICIGRHAFGDQYRATDSVIKGPGKLKLVFV 180

Query: 236 PEDGTGPVELDVYNFKGPG-IALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILK 294
           PE      +L+VYNF G G +ALAMYN DESIR+FAE+SM++A  KKWPLYLSTKNTILK
Sbjct: 181 PEGQGETTDLEVYNFTGEGGVALAMYNTDESIRSFAEASMAVALEKKWPLYLSTKNTILK 240

Query: 295 KYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQ 354
           KYDGRFKDIFQ+VYE  W+ K+E   IWYEHRLIDDMVAYA+KSEGGYVWACKNYDGDVQ
Sbjct: 241 KYDGRFKDIFQEVYEAGWKSKYEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQ 300

Query: 355 SDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWT 414
           SD LAQGFGSLGLMTSVL+  DGKT+EAEAAHGTVTRHFR+HQKG ETSTNSIASIFAWT
Sbjct: 301 SDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWT 360

Query: 415 RGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPK 461
           RGL HRAKLD N  LL F +KLEAACI  VE+GKMTKDLA+++HG K
Sbjct: 361 RGLAHRAKLDDNATLLDFTEKLEAACIGVVESGKMTKDLALILHGSK 407

Medicago sativa (taxid: 3879)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 2
>sp|P50218|IDHC_TOBAC Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|P50217|IDHC_SOLTU Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1 Back     alignment and function description
>sp|Q06197|IDHC_SOYBN Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2 Back     alignment and function description
>sp|Q04467|IDHP_BOVIN Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus GN=IDH2 PE=1 SV=2 Back     alignment and function description
>sp|Q4R502|IDHP_MACFA Isocitrate dehydrogenase [NADP], mitochondrial OS=Macaca fascicularis GN=IDH2 PE=2 SV=1 Back     alignment and function description
>sp|P48735|IDHP_HUMAN Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2 Back     alignment and function description
>sp|P56574|IDHP_RAT Isocitrate dehydrogenase [NADP], mitochondrial OS=Rattus norvegicus GN=Idh2 PE=1 SV=2 Back     alignment and function description
>sp|P33198|IDHP_PIG Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus scrofa GN=IDH2 PE=1 SV=1 Back     alignment and function description
>sp|P54071|IDHP_MOUSE Isocitrate dehydrogenase [NADP], mitochondrial OS=Mus musculus GN=Idh2 PE=1 SV=3 Back     alignment and function description

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query476
TAIR|locus:2222672485 AT5G14590 [Arabidopsis thalian 0.926 0.909 0.825 1.2e-200
TAIR|locus:2020128416 ICDH "isocitrate dehydrogenase 0.802 0.918 0.777 5.8e-169
TAIR|locus:2009759410 cICDH "cytosolic NADP+-depende 0.798 0.926 0.775 3.7e-167
UNIPROTKB|Q04467452 IDH2 "Isocitrate dehydrogenase 0.829 0.873 0.673 4.7e-151
UNIPROTKB|F1PAM3422 IDH2 "Isocitrate dehydrogenase 0.829 0.936 0.665 6.9e-150
UNIPROTKB|P48735452 IDH2 "Isocitrate dehydrogenase 0.829 0.873 0.670 6.9e-150
UNIPROTKB|Q4R502452 IDH2 "Isocitrate dehydrogenase 0.829 0.873 0.670 6.9e-150
RGD|1597139452 Idh2 "isocitrate dehydrogenase 0.829 0.873 0.660 3.8e-149
UNIPROTKB|F1SK00413 IDH2 "Isocitrate dehydrogenase 0.829 0.956 0.663 1e-148
UNIPROTKB|P33198421 IDH2 "Isocitrate dehydrogenase 0.829 0.938 0.663 1e-148
TAIR|locus:2222672 AT5G14590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1942 (688.7 bits), Expect = 1.2e-200, P = 1.2e-200
 Identities = 365/442 (82%), Positives = 402/442 (90%)

Query:    21 AATTKMMSSSTVAVKNPRWSLCSSNNSGLFS-GHVNNRVSFRNQLAPAMSFRCFASATGI 79
             A+ T M+SSST A  +  +      +SG+FS G   NRV+F  Q   A + RCFAS+ G 
Sbjct:    14 ASLTAMLSSSTSAGLSSSFVSSRFLSSGIFSSGASRNRVTFPVQFHRASAVRCFASSGGS 73

Query:    80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESA 139
             DR++VQNPIVEMDGDEMTR+IW MIK+KLI PYLDLDIKY+DLGILNRDATDDKVTVESA
Sbjct:    74 DRIQVQNPIVEMDGDEMTRVIWSMIKEKLILPYLDLDIKYFDLGILNRDATDDKVTVESA 133

Query:   140 EATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV 199
             EA LKYNVAIKCATITPDE R+KEFGLKSMWRSPNGTIRNIL+GTVFREPI+C NIPR+V
Sbjct:   134 EAALKYNVAIKCATITPDEGRVKEFGLKSMWRSPNGTIRNILDGTVFREPIMCSNIPRLV 193

Query:   200 PGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAM 259
             PGW+KPICIGRHAFGDQYRATDTVIKGPGKLKMVF PEDG  PVELDVY+FKGPG+ALAM
Sbjct:   194 PGWEKPICIGRHAFGDQYRATDTVIKGPGKLKMVFVPEDGNAPVELDVYDFKGPGVALAM 253

Query:   260 YNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319
             YNVDESIRAFAESSM++A +KKWPLYLSTKNTILKKYDGRFKDIFQ+VYE  W+QKFEEH
Sbjct:   254 YNVDESIRAFAESSMAMALTKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKQKFEEH 313

Query:   320 SIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKT 379
             SIWYEHRLIDDMVAYA+KSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLS+DGKT
Sbjct:   314 SIWYEHRLIDDMVAYAVKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSADGKT 373

Query:   380 LEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAA 439
             LE+EAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNE+L+ FV+KLE++
Sbjct:   374 LESEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNEKLMDFVKKLESS 433

Query:   440 CIEAVETGKMTKDLAILVHGPK 461
             C+  VETGKMTKDLA+L+HGPK
Sbjct:   434 CVNTVETGKMTKDLALLIHGPK 455
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0004450 "isocitrate dehydrogenase (NADP+) activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006102 "isocitrate metabolic process" evidence=IEA
GO:0008152 "metabolic process" evidence=ISS
GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA
GO:0051287 "NAD binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
TAIR|locus:2020128 ICDH "isocitrate dehydrogenase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009759 cICDH "cytosolic NADP+-dependent isocitrate dehydrogenase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q04467 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PAM3 IDH2 "Isocitrate dehydrogenase [NADP]" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P48735 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R502 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
RGD|1597139 Idh2 "isocitrate dehydrogenase 2 (NADP+), mitochondrial" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1SK00 IDH2 "Isocitrate dehydrogenase [NADP]" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P33198 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q4R502IDHP_MACFA1, ., 1, ., 1, ., 4, 20.67080.82980.8738N/Ano
Q04467IDHP_BOVIN1, ., 1, ., 1, ., 4, 20.67340.82980.8738yesno
P65097IDH_MYCTU1, ., 1, ., 1, ., 4, 20.63870.79830.9290yesno
P65098IDH_MYCBO1, ., 1, ., 1, ., 4, 20.63870.79830.9290yesno
P48735IDHP_HUMAN1, ., 1, ., 1, ., 4, 20.67080.82980.8738yesno
Q06197IDHC_SOYBN1, ., 1, ., 1, ., 4, 20.80360.80040.9225nono
Q75JR2IDHP_DICDI1, ., 1, ., 1, ., 4, 20.640.82560.9182yesno
P54071IDHP_MOUSE1, ., 1, ., 1, ., 4, 20.66070.82980.8738yesno
Q6XUZ5IDHC_SHEEP1, ., 1, ., 1, ., 4, 20.67360.80250.9227N/Ano
P21954IDHP_YEAST1, ., 1, ., 1, ., 4, 20.64880.81510.9065yesno
P33198IDHP_PIG1, ., 1, ., 1, ., 4, 20.66320.82980.9382yesno
Q40345IDHP_MEDSA1, ., 1, ., 1, ., 4, 20.77140.83820.9214N/Ano
P50217IDHC_SOLTU1, ., 1, ., 1, ., 4, 20.80670.80040.9158N/Ano
P50218IDHC_TOBAC1, ., 1, ., 1, ., 4, 20.79940.80460.9228N/Ano
Q9Z2K9IDHC_MICME1, ., 1, ., 1, ., 4, 20.67620.80250.9227N/Ano
Q9Z2K8IDHC_MICOH1, ., 1, ., 1, ., 4, 20.67360.80250.9227N/Ano
P79089IDHP_ASPNG1, ., 1, ., 1, ., 4, 20.67710.79620.7610yesno
O13285IDH1_CANTR1, ., 1, ., 1, ., 4, 20.66320.81300.9N/Ano
P56574IDHP_RAT1, ., 1, ., 1, ., 4, 20.66070.82980.8738yesno
O14254IDHP_SCHPO1, ., 1, ., 1, ., 4, 20.64460.82350.8929yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.10.976
4th Layer1.1.1.420.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query476
PLN03065483 PLN03065, PLN03065, isocitrate dehydrogenase (NADP 0.0
PLN00103410 PLN00103, PLN00103, isocitrate dehydrogenase (NADP 0.0
PTZ00435413 PTZ00435, PTZ00435, isocitrate dehydrogenase; Prov 0.0
PRK08299402 PRK08299, PRK08299, isocitrate dehydrogenase; Vali 0.0
TIGR00127409 TIGR00127, nadp_idh_euk, isocitrate dehydrogenase, 0.0
COG0538407 COG0538, Icd, Isocitrate dehydrogenases [Energy pr 1e-158
pfam00180349 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehy 9e-93
PLN00096393 PLN00096, PLN00096, isocitrate dehydrogenase (NADP 2e-48
TIGR00169346 TIGR00169, leuB, 3-isopropylmalate dehydrogenase 2e-06
PRK14025330 PRK14025, PRK14025, multifunctional 3-isopropylmal 1e-05
COG0473348 COG0473, LeuB, Isocitrate/isopropylmalate dehydrog 1e-05
PLN00118372 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+ 3e-05
TIGR02088322 TIGR02088, LEU3_arch, isopropylmalate/isohomocitra 4e-05
TIGR02924 473 TIGR02924, ICDH_alpha, isocitrate dehydrogenase 2e-04
>gnl|CDD|178617 PLN03065, PLN03065, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information 
 Score =  891 bits (2304), Expect = 0.0
 Identities = 387/459 (84%), Positives = 412/459 (89%), Gaps = 6/459 (1%)

Query: 12  LRSSAMSPAAATTKMMSSSTVAVKNPRWSLCSSNNSGLFSGHVN-NRVSFRNQLAPAMSF 70
           LR  A  PA A   M SSS+ A  NP   L S+   G+F+G ++ NR +F  Q   A S 
Sbjct: 7   LRLLAYRPALAL--MPSSSSSAAANP--LLASNPCRGIFNGGLSKNRRAFHVQFHRASSV 62

Query: 71  RCFASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDAT 130
           RCFASA   DR+KVQNPIVEMDGDEMTR+IWQMIKDKLIFPYLDLDIKY+DLGILNRDAT
Sbjct: 63  RCFASAAAADRIKVQNPIVEMDGDEMTRVIWQMIKDKLIFPYLDLDIKYFDLGILNRDAT 122

Query: 131 DDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPI 190
           DDKVTVESAEATLKYNVAIKCATITPDE R+KEFGLKSMWRSPNGTIRNILNGTVFREPI
Sbjct: 123 DDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKSMWRSPNGTIRNILNGTVFREPI 182

Query: 191 LCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNF 250
           LC+NIPR+VPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVF PEDG  PVELDVY+F
Sbjct: 183 LCKNIPRLVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFVPEDGNAPVELDVYDF 242

Query: 251 KGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEE 310
           KGPG+ALAMYNVDESIRAFAESSM++A  KKWPLYLSTKNTILKKYDGRFKDIFQ+VYEE
Sbjct: 243 KGPGVALAMYNVDESIRAFAESSMAMALQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEE 302

Query: 311 RWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTS 370
           +W+QKFEEHSIWYEHRLIDDMVAYA+KSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTS
Sbjct: 303 QWKQKFEEHSIWYEHRLIDDMVAYAVKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTS 362

Query: 371 VLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLL 430
           VLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNE LL
Sbjct: 363 VLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNEELL 422

Query: 431 HFVQKLEAACIEAVETGKMTKDLAILVHGPKYILPSPYL 469
            FV KLE+ACIE VE+GKMTKDLAIL+HGPK +    YL
Sbjct: 423 DFVHKLESACIETVESGKMTKDLAILIHGPK-VSREFYL 460

Length = 483
>gnl|CDD|177720 PLN00103, PLN00103, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>gnl|CDD|240417 PTZ00435, PTZ00435, isocitrate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|236226 PRK08299, PRK08299, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|129233 TIGR00127, nadp_idh_euk, isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>gnl|CDD|223612 COG0538, Icd, Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|215773 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase Back     alignment and domain information
>gnl|CDD|177715 PLN00096, PLN00096, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>gnl|CDD|232853 TIGR00169, leuB, 3-isopropylmalate dehydrogenase Back     alignment and domain information
>gnl|CDD|184462 PRK14025, PRK14025, multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|223549 COG0473, LeuB, Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|215062 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>gnl|CDD|233717 TIGR02088, LEU3_arch, isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>gnl|CDD|234062 TIGR02924, ICDH_alpha, isocitrate dehydrogenase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 476
PLN03065483 isocitrate dehydrogenase (NADP+); Provisional 100.0
TIGR00127409 nadp_idh_euk isocitrate dehydrogenase, NADP-depend 100.0
PTZ00435413 isocitrate dehydrogenase; Provisional 100.0
PRK08299402 isocitrate dehydrogenase; Validated 100.0
PLN00103410 isocitrate dehydrogenase (NADP+); Provisional 100.0
PLN00096393 isocitrate dehydrogenase (NADP+); Provisional 100.0
COG0473348 LeuB Isocitrate/isopropylmalate dehydrogenase [Ami 100.0
PLN00118372 isocitrate dehydrogenase (NAD+) 100.0
PRK08997334 isocitrate dehydrogenase; Provisional 100.0
PRK14025330 multifunctional 3-isopropylmalate dehydrogenase/D- 100.0
KOG1526422 consensus NADP-dependent isocitrate dehydrogenase 100.0
PRK08194352 tartrate dehydrogenase; Provisional 100.0
TIGR02089352 TTC tartrate dehydrogenase. Tartrate dehydrogenase 100.0
PRK06451412 isocitrate dehydrogenase; Validated 100.0
PRK09222 482 isocitrate dehydrogenase; Validated 100.0
PLN02329409 3-isopropylmalate dehydrogenase 100.0
TIGR02924 473 ICDH_alpha isocitrate dehydrogenase. This family o 100.0
PLN00123360 isocitrate dehydrogenase (NAD+) 100.0
TIGR00175333 mito_nad_idh isocitrate dehydrogenase, NAD-depende 100.0
TIGR00169349 leuB 3-isopropylmalate dehydrogenase. This model w 100.0
PRK07006409 isocitrate dehydrogenase; Reviewed 100.0
TIGR00183416 prok_nadp_idh isocitrate dehydrogenase, NADP-depen 100.0
PRK00772358 3-isopropylmalate dehydrogenase; Provisional 100.0
PRK03437344 3-isopropylmalate dehydrogenase; Provisional 100.0
TIGR02088322 LEU3_arch isopropylmalate/isohomocitrate dehydroge 100.0
KOG0785365 consensus Isocitrate dehydrogenase, alpha subunit 100.0
PRK07362474 isocitrate dehydrogenase; Validated 100.0
PF00180348 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; 100.0
COG0538407 Icd Isocitrate dehydrogenases [Energy production a 100.0
KOG0784375 consensus Isocitrate dehydrogenase, gamma subunit 100.0
KOG0786363 consensus 3-isopropylmalate dehydrogenase [Amino a 100.0
TIGR00178741 monomer_idh isocitrate dehydrogenase, NADP-depende 97.43
PF03971735 IDH: Monomeric isocitrate dehydrogenase; InterPro: 97.26
COG2838744 Icd Monomeric isocitrate dehydrogenase [Energy pro 94.68
PLN00123360 isocitrate dehydrogenase (NAD+) 89.41
PF04166298 PdxA: Pyridoxal phosphate biosynthetic protein Pdx 89.13
PRK09222482 isocitrate dehydrogenase; Validated 87.47
PRK03371326 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 86.98
PRK14025330 multifunctional 3-isopropylmalate dehydrogenase/D- 86.3
TIGR00183416 prok_nadp_idh isocitrate dehydrogenase, NADP-depen 85.69
PRK00232332 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 85.46
PRK05312336 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 85.44
TIGR00175333 mito_nad_idh isocitrate dehydrogenase, NAD-depende 84.88
TIGR00557320 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. 84.8
COG0538407 Icd Isocitrate dehydrogenases [Energy production a 84.75
TIGR02088322 LEU3_arch isopropylmalate/isohomocitrate dehydroge 84.49
PRK03743332 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 84.48
PLN00118372 isocitrate dehydrogenase (NAD+) 84.2
COG0473348 LeuB Isocitrate/isopropylmalate dehydrogenase [Ami 84.17
PRK06451412 isocitrate dehydrogenase; Validated 84.12
COG1995332 PdxA Pyridoxal phosphate biosynthesis protein [Coe 83.78
PRK01909329 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 83.73
PRK02746345 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 83.24
PRK07006409 isocitrate dehydrogenase; Reviewed 82.77
PRK07362474 isocitrate dehydrogenase; Validated 82.6
PRK08997334 isocitrate dehydrogenase; Provisional 82.5
PRK03437344 3-isopropylmalate dehydrogenase; Provisional 81.64
PRK08299402 isocitrate dehydrogenase; Validated 81.59
PRK03946307 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 80.99
PF00180348 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; 80.78
TIGR02924473 ICDH_alpha isocitrate dehydrogenase. This family o 80.44
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.4e-121  Score=960.01  Aligned_cols=453  Identities=83%  Similarity=1.302  Sum_probs=412.6

Q ss_pred             hhhhhhccccccccccCCCcccccCCCCccccccc-cchhhhhccccchhhhhhhcccccccceeecccEEEEcCCCcHH
Q 011846           20 AAATTKMMSSSTVAVKNPRWSLCSSNNSGLFSGHV-NNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTR   98 (476)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~vi~GDGIGp   98 (476)
                      ..+...|+++++++..||.++..+.+  +.|++.+ .+..........++.-|++++..+.+||+|.+|||+|+||||||
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~piv~~~GDem~r   90 (483)
T PLN03065         13 RPALALMPSSSSSAAANPLLASNPCR--GIFNGGLSKNRRAFHVQFHRASSVRCFASAAAADRIKVQNPIVEMDGDEMTR   90 (483)
T ss_pred             chhhhhcccccchhhcCcccccCchh--hhccccccccccccccccccccchhhhcchhhhccccccCCeEEecCCcchH
Confidence            33456788889999999999988865  4555433 34333444444455667776655568999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCccccccccccCCCCcchhHh
Q 011846           99 IIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIR  178 (476)
Q Consensus        99 EI~~a~~~~l~~~~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~~~~~~~~~~~~~s~n~~LR  178 (476)
                      +||+.++++|+.++++++|+|+|+|.+++++||+++|+|++++||++||+||||++||+++|+++|+++++|+|||++||
T Consensus        91 ~i~~~i~~~li~p~~di~~~~~dlG~e~rd~Tgd~v~~da~~aikk~~v~lKgAt~TP~~~rv~e~~lk~~w~SpN~tiR  170 (483)
T PLN03065         91 VIWQMIKDKLIFPYLDLDIKYFDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKSMWRSPNGTIR  170 (483)
T ss_pred             HHHHHHHHHHhcCCCCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCccccccccccccccCCccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999988999999999999999999


Q ss_pred             hhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCCCCCeeeeeeeecCCceEEE
Q 011846          179 NILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALA  258 (476)
Q Consensus       179 k~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnteG~~Y~g~~~~~~~~va~~  258 (476)
                      ++||||+|+|||+|+++|+++|||++||+|+||||||+|+++|+...+++++.++|+|||||++.-..+.++..++++++
T Consensus       171 ~~Ldl~v~rrPi~~~ni~r~vpg~~~pI~i~Rha~gd~Y~~iD~vi~~~g~~~~~~~rEnte~~~e~~v~~f~~~gva~~  250 (483)
T PLN03065        171 NILNGTVFREPILCKNIPRLVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFVPEDGNAPVELDVYDFKGPGVALA  250 (483)
T ss_pred             HHcCCeEEeeeeeccccCccCCCCCCCeEEeecccCCCcCceEEEEecCCeeEEEeecCCCCCcceeEeeccCCCCeEEE
Confidence            99999999999999999999999999999999999999999999999999999999999998745444444566788988


Q ss_pred             EEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCCeEEeeEeHHHHHHHHHhC
Q 011846          259 MYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKS  338 (476)
Q Consensus       259 ~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~~e~~lVDa~a~~LV~~  338 (476)
                      +++|+++++||+|+||+||++|+++||++||+||||.|||+|+++|+|||+++|+++|.+.+|+|+|+|||+||||||++
T Consensus       251 ~~nT~~sieriAr~AF~yA~~rk~~Vt~v~KaNILK~~DGlF~dif~eVa~~eyk~~yp~~~I~~e~~lIDa~~~~lvk~  330 (483)
T PLN03065        251 MYNVDESIRAFAESSMAMALQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEQWKQKFEEHSIWYEHRLIDDMVAYAVKS  330 (483)
T ss_pred             EEECHHHHHHHHHHHHHHHHHcCCCEEEEeCCCcccchHHHHHHHHHHHHHHhhhhcCCCCCceEEeeeHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999888888888889999999999999999999


Q ss_pred             CCceEEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccccccCCCCCccCcHhHHHHHHHHHH
Q 011846          339 EGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLE  418 (476)
Q Consensus       339 P~~FViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~IaGk~~iANPiA~IlS~amML~  418 (476)
                      |++|||||+|||||||||++|+++|||||+||+|+|+++++++|||+||||||||++||+||+++|||+|+||||+|||+
T Consensus       331 P~~FViv~~NlfGDIlSDl~A~l~GsLGl~pSanig~dg~~~~fEa~HGSapd~~~~~iaGk~t~ANPiA~IlA~ammL~  410 (483)
T PLN03065        331 EGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLE  410 (483)
T ss_pred             CCCcEEEeeccchhhhhHHHHHhcCchhhcccceeCCCCceEEEecCcCcCccccchhccCCCCCcChHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999865799999999999999999999967999999999999999


Q ss_pred             HhcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCcccCC-----CCccCchhhhhcccc
Q 011846          419 HRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHG-----PKYILPSPYLLHVIT  474 (476)
Q Consensus       419 hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~~-----~~~~~~~~~~~~~i~  474 (476)
                      |+|++|+|+.+.++|++||+||.+++++|++|+|||.+.+|     .+...|++|+++|+.
T Consensus       411 hlg~ld~~~~l~~~A~~Le~Av~~tie~G~~T~DLg~~~~G~~~~~~~~~~T~ef~daV~~  471 (483)
T PLN03065        411 HRAKLDKNEELLDFVHKLESACIETVESGKMTKDLAILIHGPKVSREFYLNTEEFIDAVAQ  471 (483)
T ss_pred             HhCCCCccchHHHHHHHHHHHHHHHHHcCCcccccccccCCCcccCCCCcCHHHHHHHHHH
Confidence            99999999999999999999999999999999999844433     346889999999873

>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>PTZ00435 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>PRK08299 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>PLN00118 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>PRK08997 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>PRK08194 tartrate dehydrogenase; Provisional Back     alignment and domain information
>TIGR02089 TTC tartrate dehydrogenase Back     alignment and domain information
>PRK06451 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PRK09222 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PLN02329 3-isopropylmalate dehydrogenase Back     alignment and domain information
>TIGR02924 ICDH_alpha isocitrate dehydrogenase Back     alignment and domain information
>PLN00123 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type Back     alignment and domain information
>TIGR00169 leuB 3-isopropylmalate dehydrogenase Back     alignment and domain information
>PRK07006 isocitrate dehydrogenase; Reviewed Back     alignment and domain information
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type Back     alignment and domain information
>PRK00772 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>PRK03437 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>PRK07362 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate Back     alignment and domain information
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0786 consensus 3-isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type Back     alignment and domain information
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1 Back     alignment and domain information
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>PLN00123 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) Back     alignment and domain information
>PRK09222 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional Back     alignment and domain information
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type Back     alignment and domain information
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed Back     alignment and domain information
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type Back     alignment and domain information
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase Back     alignment and domain information
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated Back     alignment and domain information
>PLN00118 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK06451 isocitrate dehydrogenase; Validated Back     alignment and domain information
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism] Back     alignment and domain information
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated Back     alignment and domain information
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK07006 isocitrate dehydrogenase; Reviewed Back     alignment and domain information
>PRK07362 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PRK08997 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>PRK03437 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>PRK08299 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate Back     alignment and domain information
>TIGR02924 ICDH_alpha isocitrate dehydrogenase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query476
1lwd_A413 Crystal Structure Of Nadp-Dependent Isocitrate Dehy 1e-165
1t09_A414 Crystal Structure Of Human Cytosolic Nadp(+)-Depend 1e-160
3mas_B419 Crystal Structure Of Heterodimeric R132h Mutant Of 1e-160
3map_A422 Crystal Structure Of Homodimeric R132h Mutant Of Hu 1e-160
3inm_A425 Crystal Structure Of Human Cytosolic Nadp(+)-Depend 1e-160
2cmj_A410 Crystal Structure Of Mouse Cytosolic Isocitrate Deh 1e-159
3us8_A427 Crystal Structure Of An Isocitrate Dehydrogenase Fr 1e-156
2qfv_A427 Crystal Structure Of Saccharomyces Cerevesiae Mitoc 1e-151
4hcx_A409 Structure Of Icdh-1 From M.tuberculosis Complexed W 1e-150
4aoy_A402 Open Ctidh. The Complex Structures Of Isocitrate De 1e-124
1zor_A399 Isocitrate Dehydrogenase From The Hyperthermophile 1e-116
2uxq_A402 Isocitrate Dehydrogenase From The Psychrophilic Bac 1e-104
3vml_A375 Chimera 3-Isopropylmalate Dehydrogenase Between She 2e-04
3vkz_A375 3-Isopropylmalate Dehydrogenase From Shewanella One 3e-04
3u1h_A390 Crystal Structure Of Ipmdh From The Last Common Anc 7e-04
3vmk_A375 3-Isopropylmalate Dehydrogenase From Shewanella Ben 7e-04
>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate Dehydrogenase From Porcine Heart Mitochondria Length = 413 Back     alignment and structure 
Iteration: 1

 Score =  576 bits (1485), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 262/395 (66%), Positives = 318/395 (80%)
Query: 81  RVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAE 140
           R+KV  P+VEMDGDEMTRIIWQ IK+KLI P++D+ +KY+DLG+ NRD T+D+VT++SA 
Sbjct: 4   RIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSAL 63
Query: 141 ATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP 200
           AT KY+VA+KCATITPDE R++EF LK MW+SPNGTIRNIL GTVFREPI+C+NIPR+VP
Sbjct: 64  ATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVP 123
Query: 201 GWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMY 260
           GW KPI IGRHA GDQY+ATD V+   G  K+VF P+DG+   + +VYNF   G+ + MY
Sbjct: 124 GWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAGGVGMGMY 183
Query: 261 NVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS 320
           N DESI  FA S    A  KKWPLY+STKNTILK YDGRFKDIFQ+++E+ ++  F+++ 
Sbjct: 184 NTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYK 243
Query: 321 IWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTL 380
           IWYEHRLIDDMVA  +KS GG+VWACKNYDGDVQSD+LAQGFGSLGLMTSVL+  DGKT+
Sbjct: 244 IWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTI 303
Query: 381 EAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAAC 440
           EAEAAHGTVTRH+R HQKG+ TSTN IASIFAWTRGLEHR KLD N+ L+ F Q LE  C
Sbjct: 304 EAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVC 363
Query: 441 IEAVETGKMTKDLAILVHGPKYILPSPYLLHVITF 475
           +E VE+G MTKDLA  +HG   +  + + L+   F
Sbjct: 364 VETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDF 398
>pdb|1T09|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex Nadp Length = 414 Back     alignment and structure
>pdb|3MAS|B Chain B, Crystal Structure Of Heterodimeric R132h Mutant Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp And Isocitrate Length = 419 Back     alignment and structure
>pdb|3MAP|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp And Isocitrate Length = 422 Back     alignment and structure
>pdb|3INM|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase R132h Mutant In Complex With Nadph, Alpha-Ketoglutarate And Calcium(2+) Length = 425 Back     alignment and structure
>pdb|2CMJ|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate Dehydrogenase Length = 410 Back     alignment and structure
>pdb|3US8|A Chain A, Crystal Structure Of An Isocitrate Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 427 Back     alignment and structure
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp(+) Length = 427 Back     alignment and structure
>pdb|4HCX|A Chain A, Structure Of Icdh-1 From M.tuberculosis Complexed With Nadph & Mn2+ Length = 409 Back     alignment and structure
>pdb|4AOY|A Chain A, Open Ctidh. The Complex Structures Of Isocitrate Dehydrogenase From Clostridium Thermocellum And Desulfotalea Psychrophila, Support A New Active Site Locking Mechanism Length = 402 Back     alignment and structure
>pdb|1ZOR|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile Thermotoga Maritima Length = 399 Back     alignment and structure
>pdb|2UXQ|A Chain A, Isocitrate Dehydrogenase From The Psychrophilic Bacterium Desulfotalea Psychrophila: Biochemical Properties And Crystal Structure Analysis Length = 402 Back     alignment and structure
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2 (M) From N-Terminal: 20% O Middle 70% M Residual 10% O Length = 375 Back     alignment and structure
>pdb|3VKZ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 At Atmospheric Pressure Length = 375 Back     alignment and structure
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor Of Bacillus Length = 390 Back     alignment and structure
>pdb|3VMK|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica Db21 Mt-2 Length = 375 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query476
1lwd_A413 Isocitrate dehydrogenase; tricarboxylic acid cycle 0.0
3us8_A427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 0.0
2qfy_A427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 0.0
2uxq_A402 Isocitrate dehydrogenase native; psychrophilic, co 0.0
4aoy_A402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 0.0
1zor_A399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 0.0
1itw_A741 Isocitrate dehydrogenase; greece KEY motif, oxidor 2e-19
2b0t_A738 NADP isocitrate dehydrogenase; monomeric, IDH, oxi 1e-17
2b0t_A 738 NADP isocitrate dehydrogenase; monomeric, IDH, oxi 7e-05
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 7e-10
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 8e-09
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 2e-08
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 2e-08
2d1c_A 496 Isocitrate dehydrogenase; structural genomics, NPP 6e-08
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 7e-08
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 8e-07
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 1e-06
1tyo_A435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 3e-06
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 3e-06
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 7e-05
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Length = 413 Back     alignment and structure
 Score =  555 bits (1431), Expect = 0.0
 Identities = 261/391 (66%), Positives = 315/391 (80%), Gaps = 1/391 (0%)

Query: 80  DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESA 139
            R+KV  P+VEMDGDEMTRIIWQ IK+KLI P++D+ +KY+DLG+ NRD T+D+VT++SA
Sbjct: 3   QRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSA 62

Query: 140 EATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV 199
            AT KY+VA+KCATITPDE R++EF LK MW+SPNGTIRNIL GTVFREPI+C+NIPR+V
Sbjct: 63  LATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLV 122

Query: 200 PGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAM 259
           PGW KPI IGRHA GDQY+ATD V+   G  K+VF P+DG+   + +VYNF   G+ + M
Sbjct: 123 PGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAGGVGMGM 182

Query: 260 YNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319
           YN DESI  FA S    A  KKWPLY+STKNTILK YDGRFKDIFQ+++E+ ++  F+++
Sbjct: 183 YNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKY 242

Query: 320 SIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKT 379
            IWYEHRLIDDMVA  +KS GG+VWACKNYDGDVQSD+LAQGFGSLGLMTSVL+  DGKT
Sbjct: 243 KIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKT 302

Query: 380 LEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAA 439
           +EAEAAHGTVTRH+R HQKG+ TSTN IASIFAWTRGLEHR KLD N+ L+ F Q LE  
Sbjct: 303 IEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKV 362

Query: 440 CIEAVETGKMTKDLAILVHGPKYILP-SPYL 469
           C+E VE+G MTKDLA  +HG   +     +L
Sbjct: 363 CVETVESGAMTKDLAGCIHGLSNVKLNEHFL 393
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Length = 427 Back     alignment and structure
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Length = 427 Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Length = 402 Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Length = 402 Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Length = 399 Back     alignment and structure
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A* Length = 741 Back     alignment and structure
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A* Length = 738 Back     alignment and structure
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A* Length = 738 Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Length = 336 Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Length = 412 Back     alignment and structure
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Length = 349 Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ... Length = 427 Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Length = 496 Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Length = 409 Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Length = 354 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Length = 333 Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Length = 429 Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Length = 435 Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Length = 423 Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} PDB: 3ty3_A Length = 366 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query476
3us8_A427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 100.0
1lwd_A413 Isocitrate dehydrogenase; tricarboxylic acid cycle 100.0
2uxq_A402 Isocitrate dehydrogenase native; psychrophilic, co 100.0
4aoy_A402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 100.0
2qfy_A427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 100.0
1zor_A399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 100.0
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 100.0
3flk_A364 Tartrate dehydrogenase/decarboxylase; cytoplasm, l 100.0
3vmk_A375 3-isopropylmalate dehydrogenase; oxidoreductase, d 100.0
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 100.0
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 100.0
3u1h_A390 3-isopropylmalate dehydrogenase; oxidored; 2.80A { 100.0
2y3z_A359 3-isopropylmalate dehydrogenase; oxidoreductase, L 100.0
3udu_A361 3-isopropylmalate dehydrogenase; structural genomi 100.0
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 100.0
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 100.0
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 100.0
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 100.0
1cnz_A363 IPMDH, IMDH, protein (3-isopropylmalate dehydrogen 100.0
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 100.0
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 100.0
2d1c_A 496 Isocitrate dehydrogenase; structural genomics, NPP 100.0
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 100.0
1tyo_A435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 100.0
1vlc_A366 3-isopropylmalate dehydrogenase; TM0556, structura 100.0
3r8w_A405 3-isopropylmalate dehydrogenase 2, chloroplastic; 100.0
1a05_A358 IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxid 100.0
1w0d_A337 3-isopropylmalate dehydrogenase; oxidoreductase, l 100.0
2b0t_A738 NADP isocitrate dehydrogenase; monomeric, IDH, oxi 97.41
1itw_A741 Isocitrate dehydrogenase; greece KEY motif, oxidor 97.4
4aoy_A402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 92.07
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 91.94
1w0d_A337 3-isopropylmalate dehydrogenase; oxidoreductase, l 90.64
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 89.87
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 89.78
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 89.49
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 89.19
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 89.11
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 89.06
4aty_A349 Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; o 88.15
1yxo_A328 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA 87.85
1tyo_A435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 87.72
3lxy_A334 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA 87.71
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 87.6
1vlc_A366 3-isopropylmalate dehydrogenase; TM0556, structura 87.5
3us8_A427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 87.35
2hi1_A330 4-hydroxythreonine-4-phosphate dehydrogenase 2; py 86.59
3flk_A364 Tartrate dehydrogenase/decarboxylase; cytoplasm, l 86.51
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 84.7
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 83.93
3r8w_A405 3-isopropylmalate dehydrogenase 2, chloroplastic; 81.63
1a05_A358 IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxid 81.5
3vmk_A375 3-isopropylmalate dehydrogenase; oxidoreductase, d 81.34
3tsn_A367 4-hydroxythreonine-4-phosphate dehydrogenase; stru 81.34
3u1h_A390 3-isopropylmalate dehydrogenase; oxidored; 2.80A { 80.12
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Back     alignment and structure
Probab=100.00  E-value=2.8e-115  Score=910.45  Aligned_cols=394  Identities=66%  Similarity=1.122  Sum_probs=362.2

Q ss_pred             ccceeecccEEEEcCCCcHHHHHHHHHHHHhcCCCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCC
Q 011846           79 IDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDE  158 (476)
Q Consensus        79 ~~~~~~~~~I~vi~GDGIGpEI~~a~~~~l~~~~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~  158 (476)
                      .+||+|.+||++|||||||||||++++++|.+++++|+|+++++|.+++++||+++|++++++|+++||+||||++||.+
T Consensus        24 ~~~i~~~~~I~vipGDGIGpEI~~~~~~vL~~~~~~i~~~~~~~G~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~  103 (427)
T 3us8_A           24 MAKIKVANPVVELDGDEMTRIIWQFIKDKLIHPYLDLDLEYYDLGVENRDATDDQVTIDAANAIKKHGVGVKCATITPDE  103 (427)
T ss_dssp             -CCEECCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCH
T ss_pred             cccccccceEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCc
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             ccccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCC
Q 011846          159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED  238 (476)
Q Consensus       159 ~~~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREn  238 (476)
                      +++++|+++++|+|+|++|||+||||+|+|||+|+++|+++++|+.||||+||||||+|+|+|+...+++..++.++.++
T Consensus       104 ~~~~e~~l~~~~~s~n~~LRk~LdlyanvRPv~~~~ip~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~l~~~~~~  183 (427)
T 3us8_A          104 GRVEEFKLKKMWKSPNGTIRNILGGVIFREPIICKNVPRLVPGWTKPIIVGRHAFGDQYRATDFKFPGKGKLSIKFVGED  183 (427)
T ss_dssp             HHHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETT
T ss_pred             cccccccccccccCchHHHHHHhCCeEEecceeccCCCCCCCCCCCCEEEEEeCCCCccCCceeEEecCCcceeeeeccc
Confidence            66677778889999999999999999999998889999998889999999999999999999887665666677777665


Q ss_pred             CCCCeeeeeeeecCCceEEEEEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhcccccc
Q 011846          239 GTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEE  318 (476)
Q Consensus       239 teG~~Y~g~~~~~~~~va~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~  318 (476)
                      +++ .-.....+.++++++++++|+++++||+|+||+||++|++|||+|||+||||.|||+|+++|+|||+++||++|++
T Consensus       184 G~~-~~~~~~~~~~~~va~~~~~T~~~~eRiar~AFe~A~~r~kkVt~v~KaNIlk~tdglfr~~~~eva~~eYp~~~~~  262 (427)
T 3us8_A          184 GQT-IEHDVYDAPGAGVALAMYNLDESITEFARASFNYGLQRKVPVYLSTKNTILKAYDGRFKDIFQKVFDEEFAAQFKA  262 (427)
T ss_dssp             SCE-EEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             ccc-ccccccccCCCcEEEEEeeCHHHHHHHHHHHHHHHHHcCCcEEEEECcccchhhhhHHHHHHHHHHHHhCccccCC
Confidence            432 2222333445678888999999999999999999999999999999999999999999999999996599999999


Q ss_pred             CCeEEeeEeHHHHHHHHHhCCCceEEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccccccC
Q 011846          319 HSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQK  398 (476)
Q Consensus       319 ~~I~~e~~lVDa~a~~LV~~P~~FViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~Ia  398 (476)
                      ++|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|||+++.+.||||+||||||||+++||
T Consensus       263 ~~I~~~~~~VD~~~mqlv~~P~~FVivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~~a~fEp~HGSAPd~~~~~iA  342 (427)
T 3us8_A          263 EKLWYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDIVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGTVTRHYRQHQK  342 (427)
T ss_dssp             TTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHSCTTSEEEEEECTTSCCEEEECCSCCCHHHHHHHHT
T ss_pred             CCeEEEEEEHHHHHHHHhhCCCCcEEEeCCcCCcHHHHHHHHhcCChhhCceeEECCCCCeEEEeCCCCCcCCccchhcC
Confidence            99999999999999999999999999999999999999999999999999999999987446999999999999999999


Q ss_pred             CCCCc-cCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCccc-CCCCccCchhhhhcccc
Q 011846          399 GQETS-TNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILV-HGPKYILPSPYLLHVIT  474 (476)
Q Consensus       399 Gk~~i-ANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~-~~~~~~~~~~~~~~~i~  474 (476)
                      ||| + |||+|+||||+|||+|+|++++|+++.++|++|++||.+++++|++|+||||.. .+.+.+.|++|+++||.
T Consensus       343 Gk~-i~ANP~A~IlS~ammL~hlG~~~~~~~l~~~A~~Ie~Av~~~l~~g~~T~Dlgg~~~~~~~~~~T~e~~daV~~  419 (427)
T 3us8_A          343 GEE-TSTNSIASIFAWTRGLAHRAKLDGNAELAKFSETLERVCVDTVESGFMTKDLALLIGPDQPWLSTTGFLDKIDE  419 (427)
T ss_dssp             TCC-CCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCBHHHHHHHCTTCCCBCHHHHHHHHHH
T ss_pred             CCC-ceeCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHcCCcCcccccccccCCcccCHHHHHHHHHH
Confidence            999 7 999999999999999999988889999999999999999999999999999864 34567899999999974
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Back     alignment and structure
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Back     alignment and structure
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Back     alignment and structure
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* Back     alignment and structure
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A* Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ... Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Back     alignment and structure
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A Back     alignment and structure
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A Back     alignment and structure
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Back     alignment and structure
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Back     alignment and structure
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Back     alignment and structure
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1 Back     alignment and structure
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana} Back     alignment and structure
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1 Back     alignment and structure
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A Back     alignment and structure
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A* Back     alignment and structure
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A* Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Back     alignment and structure
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A Back     alignment and structure
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Back     alignment and structure
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400} Back     alignment and structure
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa} Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Back     alignment and structure
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ... Back     alignment and structure
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1 Back     alignment and structure
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Back     alignment and structure
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium} Back     alignment and structure
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* Back     alignment and structure
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A Back     alignment and structure
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana} Back     alignment and structure
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1 Back     alignment and structure
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A* Back     alignment and structure
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp} Back     alignment and structure
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 476
d1lwda_413 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 1e-131
d1t0la_414 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 1e-129
d1hqsa_423 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Baci 3e-40
d1pb1a_416 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Esch 2e-32
d1cnza_363 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 3e-31
d1vlca_362 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 1e-24
d1a05a_357 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 1e-24
d1itwa_740 c.77.1.2 (A:) Monomeric isocitrate dehydrogenase { 7e-23
d1v53a1356 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase 3e-22
d1wpwa_336 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 2e-20
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 413 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: NADP-dependent isocitrate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  383 bits (984), Expect = e-131
 Identities = 261/390 (66%), Positives = 316/390 (81%)

Query: 81  RVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAE 140
           R+KV  P+VEMDGDEMTRIIWQ IK+KLI P++D+ +KY+DLG+ NRD T+D+VT++SA 
Sbjct: 4   RIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSAL 63

Query: 141 ATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP 200
           AT KY+VA+KCATITPDE R++EF LK MW+SPNGTIRNIL GTVFREPI+C+NIPR+VP
Sbjct: 64  ATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVP 123

Query: 201 GWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMY 260
           GW KPI IGRHA GDQY+ATD V+   G  K+VF P+DG+   + +VYNF   G+ + MY
Sbjct: 124 GWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAGGVGMGMY 183

Query: 261 NVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS 320
           N DESI  FA S    A  KKWPLY+STKNTILK YDGRFKDIFQ+++E+ ++  F+++ 
Sbjct: 184 NTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYK 243

Query: 321 IWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTL 380
           IWYEHRLIDDMVA  +KS GG+VWACKNYDGDVQSD+LAQGFGSLGLMTSVL+  DGKT+
Sbjct: 244 IWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTI 303

Query: 381 EAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAAC 440
           EAEAAHGTVTRH+R HQKG+ TSTN IASIFAWTRGLEHR KLD N+ L+ F Q LE  C
Sbjct: 304 EAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVC 363

Query: 441 IEAVETGKMTKDLAILVHGPKYILPSPYLL 470
           +E VE+G MTKDLA  +HG   +  + + L
Sbjct: 364 VETVESGAMTKDLAGCIHGLSNVKLNEHFL 393
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 414 Back     information, alignment and structure
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Length = 423 Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Length = 416 Back     information, alignment and structure
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Length = 363 Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Length = 362 Back     information, alignment and structure
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Length = 357 Back     information, alignment and structure
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 740 Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Length = 356 Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Length = 336 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query476
d1lwda_413 NADP-dependent isocitrate dehydrogenase {Pig (Sus 100.0
d1wpwa_336 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus 100.0
d1vlca_362 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga 100.0
d1hqsa_423 Isocitrate dehydrogenase, ICDH {Bacillus subtilis 100.0
d1v53a1356 3-isopropylmalate dehydrogenase, IPMDH {Bacillus c 100.0
d1cnza_363 3-isopropylmalate dehydrogenase, IPMDH {Salmonella 100.0
d1a05a_357 3-isopropylmalate dehydrogenase, IPMDH {Thiobacill 100.0
d1g2ua_345 3-isopropylmalate dehydrogenase, IPMDH {Thermus th 100.0
d1t0la_414 NADP-dependent isocitrate dehydrogenase {Human (Ho 100.0
d1pb1a_416 Isocitrate dehydrogenase, ICDH {Escherichia coli [ 100.0
d1w0da_337 3-isopropylmalate dehydrogenase, IPMDH {Mycobacter 100.0
d1itwa_740 Monomeric isocitrate dehydrogenase {Azotobacter vi 99.03
d1t0la_414 NADP-dependent isocitrate dehydrogenase {Human (Ho 94.69
d1ptma_329 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 93.83
d1wpwa_336 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus 90.85
d1lwda_413 NADP-dependent isocitrate dehydrogenase {Pig (Sus 89.07
d1hqsa_423 Isocitrate dehydrogenase, ICDH {Bacillus subtilis 85.09
d1pb1a_416 Isocitrate dehydrogenase, ICDH {Escherichia coli [ 83.47
d1w0da_337 3-isopropylmalate dehydrogenase, IPMDH {Mycobacter 80.63
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: NADP-dependent isocitrate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=4.1e-101  Score=800.31  Aligned_cols=393  Identities=64%  Similarity=1.095  Sum_probs=347.4

Q ss_pred             cceeecccEEEEcCCCcHHHHHHHHHHHHhcCCCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCc
Q 011846           80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET  159 (476)
Q Consensus        80 ~~~~~~~~I~vi~GDGIGpEI~~a~~~~l~~~~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~  159 (476)
                      .||+|++|||+|||||||+++|+.++++++.++++++|++||+|.+++++||+++|+|++++||++||+||||++||+..
T Consensus         3 ~ki~v~~pIv~l~GDeit~~~~~~i~~~l~~~~~di~~~~~d~G~~~~~~tg~~l~~eaiea~k~~~aiLkGa~~tP~~~   82 (413)
T d1lwda_           3 QRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEA   82 (413)
T ss_dssp             CCEECSSCEEEEECCHHHHHHHHHHHHHTTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHH
T ss_pred             CcccccCCEEEecCccHHHHHHHHHHHHHccCCCCceEEEEeCCHHHHHHhCCcCcHHHHHHHHHcCEEEECCcCCCCcc
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999854


Q ss_pred             cccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCC
Q 011846          160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG  239 (476)
Q Consensus       160 ~~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnt  239 (476)
                      +++.....+.|+|+|++||++||||+|+||+.+.+.+...++++.|+||+||||||+|+|.|+....+....+.++.+..
T Consensus        83 ~~~~~~~~~~~~s~n~~lR~~ldl~an~RP~~~~~~~~~~~~~~~d~VivREnteg~Y~g~e~~~~~~~~~~i~~~~~~g  162 (413)
T d1lwda_          83 RVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDG  162 (413)
T ss_dssp             HHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETTC
T ss_pred             ccccccccccccchhhhHHHhcCCceEEecccccCCCCcCCCCCCCeEEeeccccceeeccceeccCcccceeEEecccc
Confidence            45555567789999999999999999999984333334455677899999999999999999987654555566666654


Q ss_pred             CCCeeeeeeee-cCCceEEEEEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhcccccc
Q 011846          240 TGPVELDVYNF-KGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEE  318 (476)
Q Consensus       240 eG~~Y~g~~~~-~~~~va~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~  318 (476)
                      .. .+...... ....++..+++|+.+++||+++||++|++++++||++||+|||+.+||||+++|+|+++++|+.+++.
T Consensus       163 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ria~~af~~a~~~~~~vt~v~K~nvl~~~~glf~~~~~eva~~~p~~~~~~  241 (413)
T d1lwda_         163 SS-AKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDK  241 (413)
T ss_dssp             CC-CEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             cc-ccccccccccccccceeeccccchhhHHHHHHHHHHHhcCcceEEecccceeeehhHHHHHHHHHHHHHhccccccc
Confidence            43 33222222 23344578899999999999999999999999999999999999999999999999996444445667


Q ss_pred             CCeEEeeEeHHHHHHHHHhCCCceEEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeecccccccccccc-cc
Q 011846          319 HSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRL-HQ  397 (476)
Q Consensus       319 ~~I~~e~~lVDa~a~~LV~~P~~FViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~-~I  397 (476)
                      .+|+++++++|+|+|+|+++|+.|||||+|||||||||++|+++|||||+||+|+|++++.++|||+|||||||..+ -|
T Consensus       242 ~~I~~~~~~vd~~~~~lv~~p~~~Vivt~NlfGDIlSDlaa~l~GglGl~pSanig~~~~~~~fe~~HGsap~~ag~~~i  321 (413)
T d1lwda_         242 YKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQK  321 (413)
T ss_dssp             TTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECCSCCCHHHHHHHHT
T ss_pred             cEEEEehhhhhhhhhhhcCCCCCeEEEEccccchhHhhHHHHhcCCCCCCcccccCCCccccccccccccchhhcchhhc
Confidence            78999999999999999999997799999999999999999999999999999999998778999999999998776 57


Q ss_pred             CCCCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCcccC-------CCCccCchhhhh
Q 011846          398 KGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVH-------GPKYILPSPYLL  470 (476)
Q Consensus       398 aGk~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~-------~~~~~~~~~~~~  470 (476)
                      +||| +|||+|||||++|||+|||+.|.++++.++|++|++||.+|+++|++|+||||++.       ..+.+.|++|++
T Consensus       322 agk~-iANP~a~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G~~T~DlgG~~~~~~~~~~~~~~~sT~ef~d  400 (413)
T d1lwda_         322 GRPT-STNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLD  400 (413)
T ss_dssp             TCCC-CCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHCTTSCCBTTTBCCHHHHHH
T ss_pred             CCcc-ccChHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHCCCCCcccCCCccccccccccCCccCHHHHHH
Confidence            8899 99999999999999999999999999999999999999999999999999999864       256789999999


Q ss_pred             cccc
Q 011846          471 HVIT  474 (476)
Q Consensus       471 ~~i~  474 (476)
                      +||.
T Consensus       401 aV~~  404 (413)
T d1lwda_         401 TIKS  404 (413)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9983
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Back     information, alignment and structure
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ptma_ c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogenase PdxA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure